Query 014230
Match_columns 428
No_of_seqs 389 out of 3157
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.3E-46 1.4E-50 354.4 32.9 278 56-341 3-349 (352)
2 KOG0148 Apoptosis-promoting RN 100.0 1.4E-44 3.1E-49 304.6 21.8 236 54-344 4-241 (321)
3 KOG0117 Heterogeneous nuclear 100.0 8E-43 1.7E-47 313.4 27.7 245 53-343 80-333 (506)
4 KOG0145 RNA-binding protein EL 100.0 1.3E-42 2.8E-47 290.9 26.3 279 55-341 40-358 (360)
5 TIGR01648 hnRNP-R-Q heterogene 100.0 5.7E-41 1.2E-45 326.5 29.9 245 53-343 55-309 (578)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.4E-40 3.1E-45 327.0 32.6 276 55-341 1-351 (481)
7 TIGR01628 PABP-1234 polyadenyl 100.0 5.7E-41 1.2E-45 338.4 29.2 247 58-341 2-261 (562)
8 TIGR01628 PABP-1234 polyadenyl 100.0 7.1E-41 1.5E-45 337.7 29.4 265 54-341 86-364 (562)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.3E-40 1.2E-44 323.0 33.4 280 54-341 94-480 (481)
10 TIGR01645 half-pint poly-U bin 100.0 3.7E-39 8.1E-44 313.9 34.3 167 55-221 106-284 (612)
11 TIGR01622 SF-CC1 splicing fact 100.0 8.8E-38 1.9E-42 308.4 33.1 282 53-340 86-447 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.2E-37 2.7E-42 311.6 32.6 273 52-339 171-500 (509)
13 KOG0144 RNA-binding protein CU 100.0 1.6E-37 3.5E-42 277.9 20.6 168 53-223 31-208 (510)
14 KOG0127 Nucleolar protein fibr 100.0 1.3E-35 2.9E-40 272.8 25.4 277 57-339 6-376 (678)
15 TIGR01645 half-pint poly-U bin 100.0 1.4E-32 3.1E-37 268.0 23.8 176 140-344 106-287 (612)
16 KOG0123 Polyadenylate-binding 100.0 3.5E-32 7.6E-37 254.0 22.3 237 58-340 3-245 (369)
17 TIGR01659 sex-lethal sex-letha 100.0 1E-31 2.2E-36 249.8 23.1 168 52-222 103-276 (346)
18 TIGR01659 sex-lethal sex-letha 100.0 1E-31 2.3E-36 249.7 20.6 167 137-343 103-277 (346)
19 KOG0124 Polypyrimidine tract-b 100.0 3.8E-30 8.2E-35 225.9 22.6 163 57-219 114-288 (544)
20 KOG0123 Polyadenylate-binding 100.0 1.6E-30 3.4E-35 242.9 18.8 257 59-339 79-347 (369)
21 KOG0144 RNA-binding protein CU 100.0 4.3E-31 9.3E-36 236.9 13.2 170 138-343 31-208 (510)
22 KOG0110 RNA-binding protein (R 100.0 4E-29 8.7E-34 237.8 19.3 254 55-341 384-693 (725)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.6E-28 5.6E-33 233.1 25.2 162 141-342 3-172 (352)
24 KOG1190 Polypyrimidine tract-b 100.0 4.5E-27 9.7E-32 209.7 26.2 281 52-340 146-490 (492)
25 KOG0127 Nucleolar protein fibr 100.0 1.2E-28 2.5E-33 227.3 16.3 265 56-320 117-516 (678)
26 KOG0148 Apoptosis-promoting RN 100.0 3.6E-28 7.9E-33 205.6 17.4 161 56-222 62-239 (321)
27 KOG0147 Transcriptional coacti 100.0 4.7E-28 1E-32 224.6 15.9 282 52-339 175-526 (549)
28 TIGR01622 SF-CC1 splicing fact 100.0 5.8E-27 1.3E-31 231.4 23.5 175 138-341 86-266 (457)
29 TIGR01648 hnRNP-R-Q heterogene 100.0 4.5E-27 9.7E-32 229.5 20.3 196 103-341 18-222 (578)
30 KOG0145 RNA-binding protein EL 99.9 3.3E-27 7.2E-32 198.4 14.0 167 138-344 38-212 (360)
31 KOG0124 Polypyrimidine tract-b 99.9 7.2E-28 1.6E-32 211.6 8.7 172 142-342 114-291 (544)
32 KOG0131 Splicing factor 3b, su 99.9 8.7E-27 1.9E-31 186.1 12.2 168 140-345 8-181 (203)
33 KOG0117 Heterogeneous nuclear 99.9 1.2E-25 2.7E-30 202.9 19.9 195 101-344 41-251 (506)
34 KOG4212 RNA-binding protein hn 99.9 1.2E-24 2.5E-29 195.7 25.3 162 54-216 42-289 (608)
35 KOG0131 Splicing factor 3b, su 99.9 5.5E-26 1.2E-30 181.5 12.6 169 55-225 8-181 (203)
36 KOG0109 RNA-binding protein LA 99.9 4.2E-25 9.2E-30 188.9 10.8 148 58-222 4-151 (346)
37 KOG1190 Polypyrimidine tract-b 99.9 2.3E-23 5E-28 186.1 20.9 277 53-341 25-373 (492)
38 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6E-23 1.3E-27 205.7 20.7 167 54-220 293-501 (509)
39 KOG0109 RNA-binding protein LA 99.9 5.9E-24 1.3E-28 181.9 11.1 148 142-341 3-150 (346)
40 KOG0146 RNA-binding protein ET 99.9 2.9E-23 6.3E-28 175.4 10.2 214 121-343 2-367 (371)
41 KOG0110 RNA-binding protein (R 99.9 8.7E-23 1.9E-27 194.8 14.2 257 53-339 224-596 (725)
42 KOG0146 RNA-binding protein ET 99.9 2.2E-22 4.7E-27 170.2 10.8 170 55-224 18-368 (371)
43 KOG4211 Splicing factor hnRNP- 99.9 1.6E-19 3.5E-24 166.0 24.3 276 54-338 8-355 (510)
44 KOG1456 Heterogeneous nuclear 99.8 2E-18 4.3E-23 152.9 25.0 262 59-330 125-474 (494)
45 KOG1456 Heterogeneous nuclear 99.8 3.4E-18 7.3E-23 151.5 26.3 279 52-342 27-364 (494)
46 KOG4206 Spliceosomal protein s 99.8 1.8E-19 4E-24 150.5 17.2 191 140-339 8-220 (221)
47 KOG0120 Splicing factor U2AF, 99.8 5.6E-20 1.2E-24 173.7 14.8 266 54-338 173-489 (500)
48 KOG0147 Transcriptional coacti 99.8 1.3E-20 2.8E-25 175.4 8.7 182 138-346 176-363 (549)
49 KOG0105 Alternative splicing f 99.8 1.3E-18 2.7E-23 139.6 18.6 169 140-323 5-173 (241)
50 KOG0105 Alternative splicing f 99.8 2.4E-19 5.2E-24 143.7 12.7 147 55-208 5-175 (241)
51 KOG4205 RNA-binding protein mu 99.8 1E-19 2.2E-24 164.2 10.9 169 55-225 5-180 (311)
52 KOG4205 RNA-binding protein mu 99.8 1.1E-19 2.3E-24 164.1 10.7 167 140-342 5-177 (311)
53 KOG4206 Spliceosomal protein s 99.8 2.9E-18 6.4E-23 143.3 15.3 160 55-219 8-220 (221)
54 KOG1457 RNA binding protein (c 99.7 2.8E-17 6.2E-22 135.8 13.9 184 140-323 33-271 (284)
55 PLN03134 glycine-rich RNA-bind 99.7 3.5E-17 7.6E-22 133.4 12.4 85 139-223 32-116 (144)
56 KOG1457 RNA binding protein (c 99.7 1.9E-16 4E-21 131.1 14.9 153 52-208 30-273 (284)
57 KOG4212 RNA-binding protein hn 99.7 3.7E-16 8.1E-21 141.3 16.6 195 140-340 43-293 (608)
58 KOG0106 Alternative splicing f 99.7 1E-16 2.2E-21 135.7 8.7 165 142-336 2-166 (216)
59 KOG1365 RNA-binding protein Fu 99.7 3.5E-16 7.6E-21 139.3 10.7 273 54-337 58-358 (508)
60 KOG4211 Splicing factor hnRNP- 99.7 1.7E-15 3.8E-20 139.6 15.3 164 140-337 9-178 (510)
61 KOG1548 Transcription elongati 99.7 2.4E-15 5.1E-20 132.6 15.2 193 139-337 132-348 (382)
62 PLN03134 glycine-rich RNA-bind 99.7 1.3E-15 2.9E-20 124.1 12.5 76 261-341 33-114 (144)
63 KOG1548 Transcription elongati 99.6 1.4E-14 3E-19 127.9 16.9 166 52-221 130-352 (382)
64 KOG0106 Alternative splicing f 99.6 5.2E-16 1.1E-20 131.4 7.5 149 57-217 2-167 (216)
65 KOG0122 Translation initiation 99.6 2.3E-15 5E-20 126.6 9.3 83 139-221 187-269 (270)
66 PF00076 RRM_1: RNA recognitio 99.6 1.2E-14 2.5E-19 104.2 9.0 70 144-214 1-70 (70)
67 KOG0125 Ataxin 2-binding prote 99.6 6.6E-15 1.4E-19 128.9 7.5 80 53-132 93-174 (376)
68 KOG0125 Ataxin 2-binding prote 99.6 2.8E-14 6E-19 125.0 11.2 77 260-341 94-174 (376)
69 KOG4660 Protein Mei2, essentia 99.5 1.3E-13 2.7E-18 129.5 15.4 161 51-220 70-249 (549)
70 KOG0149 Predicted RNA-binding 99.5 1.3E-14 2.7E-19 121.8 6.5 81 139-220 10-90 (247)
71 KOG0121 Nuclear cap-binding pr 99.5 2.3E-14 4.9E-19 108.3 6.9 81 140-220 35-115 (153)
72 KOG0126 Predicted RNA-binding 99.5 2.3E-15 5E-20 120.7 1.3 87 136-222 30-116 (219)
73 KOG0113 U1 small nuclear ribon 99.5 6.8E-14 1.5E-18 121.1 9.8 94 128-221 88-181 (335)
74 PLN03120 nucleic acid binding 99.5 2.7E-13 5.9E-18 118.2 13.5 75 263-343 5-82 (260)
75 PF00076 RRM_1: RNA recognitio 99.5 5.2E-14 1.1E-18 100.7 7.4 65 265-334 1-70 (70)
76 PF14259 RRM_6: RNA recognitio 99.5 1.2E-13 2.6E-18 98.8 9.0 70 144-214 1-70 (70)
77 KOG0107 Alternative splicing f 99.5 8.1E-14 1.8E-18 111.4 8.8 79 55-134 9-87 (195)
78 PLN03120 nucleic acid binding 99.5 1.7E-13 3.6E-18 119.5 10.2 76 56-132 4-80 (260)
79 KOG0114 Predicted RNA-binding 99.5 3E-13 6.5E-18 98.3 9.4 83 50-132 12-95 (124)
80 COG0724 RNA-binding proteins ( 99.5 5.4E-13 1.2E-17 123.4 13.7 145 141-299 115-260 (306)
81 KOG4207 Predicted splicing fac 99.5 6.4E-14 1.4E-18 114.8 6.3 86 137-222 9-94 (256)
82 KOG0114 Predicted RNA-binding 99.4 5.5E-13 1.2E-17 96.9 8.7 70 263-337 19-91 (124)
83 PLN03213 repressor of silencin 99.4 3.3E-13 7.2E-18 124.3 8.9 77 55-131 9-87 (759)
84 KOG0122 Translation initiation 99.4 7.8E-13 1.7E-17 111.5 10.4 76 261-341 188-269 (270)
85 KOG0121 Nuclear cap-binding pr 99.4 3.4E-13 7.4E-18 102.0 7.1 77 54-130 34-114 (153)
86 KOG0107 Alternative splicing f 99.4 3.4E-13 7.5E-18 107.9 7.5 75 262-341 10-85 (195)
87 KOG0108 mRNA cleavage and poly 99.4 1.8E-13 3.9E-18 129.4 6.9 82 142-223 19-100 (435)
88 KOG0120 Splicing factor U2AF, 99.4 2.7E-12 5.8E-17 122.0 14.5 167 54-220 287-491 (500)
89 PF14259 RRM_6: RNA recognitio 99.4 7.9E-13 1.7E-17 94.5 7.8 65 265-334 1-70 (70)
90 KOG0111 Cyclophilin-type pepti 99.4 2.1E-13 4.5E-18 112.8 5.3 85 140-224 9-93 (298)
91 KOG0149 Predicted RNA-binding 99.4 1.1E-12 2.4E-17 110.3 8.9 76 259-340 9-90 (247)
92 KOG4207 Predicted splicing fac 99.4 7.5E-13 1.6E-17 108.6 6.3 77 261-342 12-94 (256)
93 COG0724 RNA-binding proteins ( 99.4 6.2E-12 1.4E-16 116.3 13.2 145 56-200 115-284 (306)
94 PLN03213 repressor of silencin 99.4 2.4E-12 5.3E-17 118.7 9.2 78 139-220 8-87 (759)
95 smart00362 RRM_2 RNA recogniti 99.4 5.5E-12 1.2E-16 90.3 9.0 71 143-215 1-71 (72)
96 smart00362 RRM_2 RNA recogniti 99.3 7.9E-12 1.7E-16 89.5 9.0 68 264-336 1-72 (72)
97 PLN03121 nucleic acid binding 99.3 6.5E-12 1.4E-16 107.7 9.6 76 141-220 5-80 (243)
98 smart00360 RRM RNA recognition 99.3 6.6E-12 1.4E-16 89.6 8.3 71 146-216 1-71 (71)
99 PLN03121 nucleic acid binding 99.3 1.1E-11 2.5E-16 106.2 11.0 74 261-340 4-80 (243)
100 PF13893 RRM_5: RNA recognitio 99.3 8.1E-12 1.8E-16 84.8 8.1 55 279-338 1-56 (56)
101 KOG4307 RNA binding protein RB 99.3 2.1E-11 4.6E-16 116.9 12.7 190 141-337 311-510 (944)
102 KOG0111 Cyclophilin-type pepti 99.3 2.2E-12 4.7E-17 106.8 5.0 83 261-348 9-97 (298)
103 KOG0113 U1 small nuclear ribon 99.3 1.5E-11 3.2E-16 106.8 9.9 79 258-341 97-181 (335)
104 KOG0130 RNA-binding protein RB 99.3 5.9E-12 1.3E-16 96.2 6.5 84 139-222 70-153 (170)
105 KOG1365 RNA-binding protein Fu 99.3 1.4E-11 3E-16 110.3 9.1 161 57-219 162-360 (508)
106 PF13893 RRM_5: RNA recognitio 99.3 1.6E-11 3.5E-16 83.3 6.8 56 73-129 1-56 (56)
107 KOG0130 RNA-binding protein RB 99.3 1.5E-11 3.2E-16 94.0 6.9 80 259-343 69-154 (170)
108 KOG0128 RNA-binding protein SA 99.3 1.4E-12 3E-17 128.1 1.4 227 56-340 571-814 (881)
109 cd00590 RRM RRM (RNA recogniti 99.3 5.7E-11 1.2E-15 85.5 9.6 74 143-217 1-74 (74)
110 smart00361 RRM_1 RNA recogniti 99.2 3.1E-11 6.8E-16 85.9 7.9 61 155-215 2-69 (70)
111 cd00590 RRM RRM (RNA recogniti 99.2 6.1E-11 1.3E-15 85.3 9.1 71 58-128 1-74 (74)
112 smart00360 RRM RNA recognition 99.2 4.3E-11 9.3E-16 85.3 8.0 67 61-127 1-71 (71)
113 KOG4307 RNA binding protein RB 99.2 4.4E-10 9.5E-15 108.0 16.0 160 56-218 311-511 (944)
114 KOG0129 Predicted RNA-binding 99.2 2.1E-10 4.6E-15 107.2 13.1 150 53-202 256-432 (520)
115 KOG4454 RNA binding protein (R 99.2 6.4E-12 1.4E-16 104.2 2.0 144 53-209 6-151 (267)
116 KOG0226 RNA-binding proteins [ 99.2 3.5E-11 7.5E-16 102.2 5.3 160 59-218 99-267 (290)
117 KOG0126 Predicted RNA-binding 99.1 6.9E-12 1.5E-16 101.0 -0.0 73 263-340 36-114 (219)
118 KOG0132 RNA polymerase II C-te 99.1 1.1E-10 2.4E-15 113.6 7.8 107 56-164 421-529 (894)
119 KOG0129 Predicted RNA-binding 99.1 2E-09 4.4E-14 100.8 15.3 161 139-319 257-432 (520)
120 KOG0153 Predicted RNA-binding 99.1 2.8E-10 6.1E-15 101.1 9.0 82 255-340 221-302 (377)
121 KOG0132 RNA polymerase II C-te 99.1 1.8E-10 4E-15 112.1 8.4 78 261-343 420-497 (894)
122 KOG0415 Predicted peptidyl pro 99.1 8.1E-11 1.8E-15 104.4 5.2 85 136-220 234-318 (479)
123 KOG0108 mRNA cleavage and poly 99.1 1.9E-10 4.2E-15 109.0 7.8 78 57-134 19-100 (435)
124 KOG0128 RNA-binding protein SA 99.1 3.8E-11 8.2E-16 118.2 2.6 143 57-220 668-814 (881)
125 KOG0112 Large RNA-binding prot 99.1 1.6E-10 3.4E-15 114.4 5.9 163 139-344 370-534 (975)
126 KOG4208 Nucleolar RNA-binding 99.0 2.1E-09 4.6E-14 88.9 8.1 83 139-221 47-130 (214)
127 smart00361 RRM_1 RNA recogniti 98.9 3.8E-09 8.2E-14 75.1 7.1 56 276-336 2-70 (70)
128 KOG4454 RNA binding protein (R 98.9 2.4E-10 5.3E-15 94.9 0.5 146 139-335 7-157 (267)
129 KOG0153 Predicted RNA-binding 98.9 3.5E-09 7.5E-14 94.2 7.4 78 52-131 224-302 (377)
130 KOG0226 RNA-binding proteins [ 98.9 2.2E-09 4.8E-14 91.4 5.9 163 142-337 97-266 (290)
131 KOG0415 Predicted peptidyl pro 98.9 4.5E-09 9.7E-14 93.5 6.9 78 54-131 237-318 (479)
132 KOG4660 Protein Mei2, essentia 98.8 4.9E-09 1.1E-13 99.1 5.4 181 135-340 69-249 (549)
133 KOG4210 Nuclear localization s 98.7 1.1E-08 2.3E-13 92.9 5.3 172 140-341 87-264 (285)
134 KOG4210 Nuclear localization s 98.7 1.4E-08 3E-13 92.1 5.7 167 55-222 87-265 (285)
135 KOG0151 Predicted splicing reg 98.7 6.4E-08 1.4E-12 93.8 9.9 83 254-341 166-257 (877)
136 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.7E-08 8E-13 93.0 7.8 81 140-220 404-484 (940)
137 KOG0112 Large RNA-binding prot 98.7 2.2E-08 4.9E-13 99.5 6.6 160 52-222 368-532 (975)
138 PF04059 RRM_2: RNA recognitio 98.7 1.5E-07 3.2E-12 70.2 8.4 79 142-220 2-86 (97)
139 KOG4208 Nucleolar RNA-binding 98.7 9.5E-08 2.1E-12 79.3 7.9 73 263-339 50-128 (214)
140 KOG4661 Hsp27-ERE-TATA-binding 98.6 2.5E-07 5.4E-12 87.5 10.6 77 260-341 403-485 (940)
141 KOG0533 RRM motif-containing p 98.6 1.5E-07 3.2E-12 82.3 8.2 85 138-223 80-164 (243)
142 PF11608 Limkain-b1: Limkain b 98.6 4E-07 8.7E-12 64.3 8.3 70 263-340 3-76 (90)
143 KOG2193 IGF-II mRNA-binding pr 98.5 3.8E-08 8.3E-13 89.7 2.1 154 58-221 3-157 (584)
144 KOG0151 Predicted splicing reg 98.5 3.4E-07 7.5E-12 88.9 8.7 77 54-130 172-255 (877)
145 PF04059 RRM_2: RNA recognitio 98.5 7.3E-07 1.6E-11 66.5 8.3 78 263-340 2-86 (97)
146 KOG0533 RRM motif-containing p 98.5 5.6E-07 1.2E-11 78.7 8.2 80 54-133 81-163 (243)
147 KOG4209 Splicing factor RNPS1, 98.4 4.3E-07 9.4E-12 79.7 6.3 84 137-221 97-180 (231)
148 KOG0116 RasGAP SH3 binding pro 98.4 1.2E-06 2.6E-11 83.0 8.3 78 53-131 285-366 (419)
149 KOG0116 RasGAP SH3 binding pro 98.4 8.6E-07 1.9E-11 84.0 7.1 79 142-221 289-367 (419)
150 KOG2193 IGF-II mRNA-binding pr 98.3 9.8E-08 2.1E-12 87.1 -1.8 149 142-339 2-155 (584)
151 PF11608 Limkain-b1: Limkain b 98.2 7.2E-06 1.6E-10 58.0 7.1 70 58-133 4-78 (90)
152 KOG4676 Splicing factor, argin 98.1 1.7E-06 3.8E-11 78.4 3.4 146 58-209 9-214 (479)
153 PF08777 RRM_3: RNA binding mo 98.1 7.8E-06 1.7E-10 62.6 6.3 72 263-336 2-75 (105)
154 KOG4209 Splicing factor RNPS1, 98.0 1E-05 2.3E-10 71.0 5.9 74 262-341 101-180 (231)
155 KOG4676 Splicing factor, argin 98.0 7.8E-06 1.7E-10 74.3 5.0 177 143-323 9-211 (479)
156 PF14605 Nup35_RRM_2: Nup53/35 97.8 4.5E-05 9.8E-10 50.3 5.2 52 263-317 2-53 (53)
157 PF08777 RRM_3: RNA binding mo 97.8 5.4E-05 1.2E-09 58.0 5.4 59 57-117 2-60 (105)
158 KOG0115 RNA-binding protein p5 97.7 6.2E-05 1.3E-09 64.9 6.1 100 106-216 6-109 (275)
159 KOG1995 Conserved Zn-finger pr 97.7 3.8E-05 8.2E-10 69.6 3.7 85 138-222 63-155 (351)
160 COG5175 MOT2 Transcriptional r 97.6 0.00012 2.6E-09 65.5 6.4 73 263-340 115-202 (480)
161 COG5175 MOT2 Transcriptional r 97.5 0.00038 8.2E-09 62.3 8.2 80 142-221 115-203 (480)
162 KOG1855 Predicted RNA-binding 97.5 0.00015 3.4E-09 66.9 4.9 64 258-323 227-309 (484)
163 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00029 6.2E-09 46.5 4.8 52 57-111 2-53 (53)
164 KOG1996 mRNA splicing factor [ 97.4 0.0005 1.1E-08 60.4 6.5 65 155-219 300-365 (378)
165 KOG0115 RNA-binding protein p5 97.3 0.00053 1.1E-08 59.3 6.3 83 195-321 6-93 (275)
166 KOG1855 Predicted RNA-binding 97.3 0.00092 2E-08 62.0 8.2 80 137-216 227-319 (484)
167 KOG3152 TBP-binding protein, a 97.3 0.00014 3.1E-09 62.7 2.2 73 140-212 73-157 (278)
168 KOG2416 Acinus (induces apopto 97.2 0.00028 6E-09 67.9 3.9 86 254-340 436-521 (718)
169 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0018 3.9E-08 48.8 7.1 70 263-339 7-90 (100)
170 KOG3152 TBP-binding protein, a 97.1 0.00031 6.7E-09 60.7 2.6 65 263-332 75-157 (278)
171 KOG2314 Translation initiation 97.1 0.0018 4E-08 62.1 7.9 76 140-216 57-139 (698)
172 KOG2202 U2 snRNP splicing fact 97.1 0.00038 8.2E-09 60.3 2.6 60 71-130 83-146 (260)
173 KOG1996 mRNA splicing factor [ 97.0 0.0018 3.8E-08 57.1 6.3 61 70-130 300-365 (378)
174 KOG1995 Conserved Zn-finger pr 97.0 0.0017 3.7E-08 59.2 6.3 81 53-133 63-155 (351)
175 KOG4849 mRNA cleavage factor I 97.0 0.0008 1.7E-08 60.6 4.1 76 141-216 80-157 (498)
176 KOG2135 Proteins containing th 97.0 0.0034 7.4E-08 59.1 8.1 75 262-342 372-447 (526)
177 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.003 6.5E-08 47.6 6.2 72 57-130 7-90 (100)
178 PF08675 RNA_bind: RNA binding 96.9 0.0034 7.3E-08 44.7 5.5 54 59-116 11-64 (87)
179 KOG2202 U2 snRNP splicing fact 96.8 0.00062 1.3E-08 59.0 2.2 60 277-341 83-148 (260)
180 PF10309 DUF2414: Protein of u 96.8 0.0075 1.6E-07 40.8 6.8 52 58-114 7-62 (62)
181 PF08952 DUF1866: Domain of un 96.7 0.0091 2E-07 47.8 7.5 58 156-222 51-108 (146)
182 KOG2314 Translation initiation 96.7 0.0045 9.7E-08 59.6 6.6 70 263-337 59-140 (698)
183 KOG2591 c-Mpl binding protein, 96.5 0.0078 1.7E-07 57.8 7.1 72 263-336 176-247 (684)
184 PF15023 DUF4523: Protein of u 96.5 0.019 4E-07 45.4 7.7 74 52-129 82-159 (166)
185 PF08952 DUF1866: Domain of un 96.4 0.01 2.2E-07 47.5 6.4 57 71-132 51-107 (146)
186 KOG2416 Acinus (induces apopto 96.2 0.0072 1.6E-07 58.6 5.3 78 52-131 440-521 (718)
187 KOG4849 mRNA cleavage factor I 96.2 0.0082 1.8E-07 54.3 4.9 71 262-335 80-156 (498)
188 PF10309 DUF2414: Protein of u 96.0 0.044 9.5E-07 37.1 6.7 56 263-320 6-62 (62)
189 PF15023 DUF4523: Protein of u 95.8 0.053 1.2E-06 42.8 7.4 73 259-338 83-159 (166)
190 PF08675 RNA_bind: RNA binding 95.6 0.062 1.3E-06 38.4 6.3 55 264-322 10-64 (87)
191 PF04847 Calcipressin: Calcipr 95.5 0.036 7.9E-07 47.0 5.8 62 275-341 8-71 (184)
192 KOG2591 c-Mpl binding protein, 95.2 0.046 1E-06 52.8 6.2 98 104-217 147-248 (684)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.019 4.2E-07 48.5 3.3 68 54-121 5-82 (176)
194 PF10567 Nab6_mRNP_bdg: RNA-re 95.0 1.6 3.4E-05 39.3 14.7 177 137-323 11-214 (309)
195 PF10567 Nab6_mRNP_bdg: RNA-re 95.0 0.58 1.2E-05 42.0 11.9 157 48-205 7-213 (309)
196 PF07576 BRAP2: BRCA1-associat 94.8 0.27 5.8E-06 37.9 8.5 65 143-209 14-80 (110)
197 KOG2068 MOT2 transcription fac 94.7 0.014 2.9E-07 53.1 1.2 79 142-221 78-163 (327)
198 PF03880 DbpA: DbpA RNA bindin 94.5 0.28 6.1E-06 34.9 7.5 68 264-338 2-74 (74)
199 PF07576 BRAP2: BRCA1-associat 94.3 0.76 1.7E-05 35.4 9.8 74 263-337 14-91 (110)
200 KOG2068 MOT2 transcription fac 94.2 0.02 4.3E-07 52.0 1.1 74 263-341 78-163 (327)
201 KOG2253 U1 snRNP complex, subu 94.0 0.042 9.1E-07 54.3 3.0 106 55-165 39-159 (668)
202 PF11767 SET_assoc: Histone ly 93.9 0.3 6.5E-06 33.6 6.2 55 152-215 11-65 (66)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 93.8 0.11 2.4E-06 44.0 4.8 80 141-220 7-97 (176)
204 KOG4574 RNA-binding protein (c 93.7 0.043 9.2E-07 55.7 2.6 73 265-340 301-373 (1007)
205 PF04847 Calcipressin: Calcipr 93.6 0.23 5.1E-06 42.1 6.5 62 154-221 8-71 (184)
206 KOG0804 Cytoplasmic Zn-finger 93.6 0.28 6.1E-06 46.5 7.4 69 53-121 71-142 (493)
207 KOG0804 Cytoplasmic Zn-finger 93.3 0.29 6.2E-06 46.4 7.0 67 141-209 74-141 (493)
208 PF11767 SET_assoc: Histone ly 92.9 0.55 1.2E-05 32.4 6.3 55 273-335 11-65 (66)
209 KOG2135 Proteins containing th 92.8 0.067 1.5E-06 50.7 2.2 75 56-133 372-447 (526)
210 KOG4019 Calcineurin-mediated s 92.6 0.17 3.7E-06 41.8 4.0 77 263-344 11-93 (193)
211 KOG2318 Uncharacterized conser 92.4 0.98 2.1E-05 44.3 9.3 131 53-221 171-308 (650)
212 PF07292 NID: Nmi/IFP 35 domai 92.2 0.19 4E-06 36.8 3.4 67 97-163 1-74 (88)
213 KOG2253 U1 snRNP complex, subu 91.7 0.15 3.2E-06 50.6 3.1 75 256-338 34-108 (668)
214 KOG4285 Mitotic phosphoprotein 90.6 0.78 1.7E-05 41.2 6.2 66 59-128 200-266 (350)
215 PF07292 NID: Nmi/IFP 35 domai 90.5 0.4 8.7E-06 35.1 3.7 73 186-284 1-74 (88)
216 KOG4574 RNA-binding protein (c 90.4 0.2 4.3E-06 51.1 2.7 70 60-131 302-373 (1007)
217 KOG4285 Mitotic phosphoprotein 90.1 0.65 1.4E-05 41.7 5.3 68 263-337 198-266 (350)
218 PF03880 DbpA: DbpA RNA bindin 89.1 1.6 3.6E-05 30.9 6.0 58 67-129 12-74 (74)
219 KOG4410 5-formyltetrahydrofola 88.0 2.2 4.7E-05 38.1 7.0 52 260-312 328-379 (396)
220 KOG4410 5-formyltetrahydrofola 85.7 2.5 5.3E-05 37.7 6.1 53 52-105 326-378 (396)
221 KOG2891 Surface glycoprotein [ 83.7 0.7 1.5E-05 40.8 1.9 76 263-340 150-267 (445)
222 TIGR02542 B_forsyth_147 Bacter 79.8 4.5 9.9E-05 30.8 4.7 112 64-193 11-129 (145)
223 KOG2318 Uncharacterized conser 75.9 13 0.00029 36.8 7.8 76 259-337 171-304 (650)
224 PF14111 DUF4283: Domain of un 75.7 4.6 0.0001 33.0 4.4 106 67-174 28-138 (153)
225 KOG1883 Cofactor required for 74.8 2.6 5.6E-05 45.0 3.0 10 18-27 1448-1457(1517)
226 KOG4369 RTK signaling protein 73.8 2.2 4.7E-05 45.7 2.2 8 280-287 2080-2087(2131)
227 KOG4369 RTK signaling protein 73.0 4.1 8.9E-05 43.7 3.9 6 97-102 1930-1935(2131)
228 PF03468 XS: XS domain; Inter 67.6 8.4 0.00018 30.0 3.8 49 264-312 10-68 (116)
229 PF14111 DUF4283: Domain of un 62.7 6.6 0.00014 32.1 2.6 109 153-298 29-139 (153)
230 KOG3648 Golgi apparatus protei 62.6 13 0.00028 37.3 4.8 8 30-37 86-93 (1179)
231 KOG4483 Uncharacterized conser 60.7 20 0.00043 33.9 5.4 53 57-112 392-445 (528)
232 KOG2295 C2H2 Zn-finger protein 60.4 1.6 3.4E-05 42.7 -1.7 70 141-210 231-300 (648)
233 KOG4483 Uncharacterized conser 59.3 52 0.0011 31.2 7.8 54 141-201 391-445 (528)
234 PRK14548 50S ribosomal protein 58.0 43 0.00094 24.4 5.7 56 59-114 23-81 (84)
235 PF03468 XS: XS domain; Inter 57.6 13 0.00029 28.9 3.3 37 154-193 30-66 (116)
236 PF14893 PNMA: PNMA 57.5 7.4 0.00016 36.4 2.2 53 54-106 16-74 (331)
237 PF15513 DUF4651: Domain of un 55.7 24 0.00052 23.9 3.7 22 277-298 9-30 (62)
238 PRK14548 50S ribosomal protein 55.2 33 0.00072 24.9 4.8 54 265-319 23-80 (84)
239 TIGR03636 L23_arch archaeal ri 54.6 57 0.0012 23.3 5.8 56 59-114 16-74 (77)
240 PF06752 E_Pc_C: Enhancer of P 53.4 19 0.00041 31.3 3.8 10 6-15 10-19 (230)
241 TIGR03636 L23_arch archaeal ri 52.7 42 0.00091 24.0 4.9 54 265-319 16-73 (77)
242 COG5624 TAF61 Transcription in 52.1 20 0.00043 33.9 3.9 14 274-287 458-471 (505)
243 KOG1295 Nonsense-mediated deca 48.3 20 0.00044 33.8 3.4 64 56-119 7-77 (376)
244 PF07530 PRE_C2HC: Associated 46.8 35 0.00075 23.7 3.6 63 156-221 2-65 (68)
245 KOG4019 Calcineurin-mediated s 45.9 51 0.0011 27.7 5.0 63 157-225 31-94 (193)
246 KOG1151 Tousled-like protein k 45.0 13 0.00029 35.9 1.7 13 264-276 492-504 (775)
247 PF00403 HMA: Heavy-metal-asso 44.5 91 0.002 20.6 6.5 46 264-311 1-46 (62)
248 KOG4407 Predicted Rho GTPase-a 42.4 10 0.00023 41.4 0.7 13 56-68 411-423 (1973)
249 COG5638 Uncharacterized conser 42.2 1.9E+02 0.004 27.7 8.6 36 185-220 260-297 (622)
250 smart00596 PRE_C2HC PRE_C2HC d 41.5 39 0.00084 23.5 3.1 63 156-221 2-65 (69)
251 PF02714 DUF221: Domain of unk 41.2 46 0.00099 31.2 4.8 56 97-163 1-56 (325)
252 KOG1295 Nonsense-mediated deca 38.9 31 0.00068 32.6 3.1 60 263-323 8-75 (376)
253 PF02714 DUF221: Domain of unk 38.2 39 0.00085 31.6 3.9 34 303-341 1-34 (325)
254 PF08734 GYD: GYD domain; Int 37.1 1.7E+02 0.0037 21.6 6.5 46 276-322 22-69 (91)
255 KOG3878 Protein involved in ma 35.7 2.3E+02 0.0049 26.4 7.8 38 67-104 302-352 (469)
256 KOG1546 Metacaspase involved i 34.6 3.9E+02 0.0085 25.0 13.9 118 57-176 64-202 (362)
257 PF12829 Mhr1: Transcriptional 33.2 87 0.0019 23.2 4.1 52 269-321 19-72 (91)
258 KOG3982 Runt and related trans 32.5 30 0.00066 32.3 2.0 10 71-80 99-108 (475)
259 PRK10927 essential cell divisi 32.4 1.3E+02 0.0029 27.8 6.0 64 55-122 246-312 (319)
260 COG5193 LHP1 La protein, small 32.4 26 0.00057 33.2 1.5 61 141-201 174-244 (438)
261 KOG2891 Surface glycoprotein [ 32.3 60 0.0013 29.1 3.7 33 57-89 150-194 (445)
262 KOG2295 C2H2 Zn-finger protein 32.2 11 0.00023 37.2 -1.0 69 260-333 229-303 (648)
263 KOG4407 Predicted Rho GTPase-a 31.5 16 0.00035 40.0 0.1 6 187-192 634-639 (1973)
264 cd04908 ACT_Bt0572_1 N-termina 31.2 1.7E+02 0.0036 19.7 7.1 45 69-113 14-59 (66)
265 KOG4008 rRNA processing protei 30.3 37 0.00081 29.7 2.0 26 262-287 40-65 (261)
266 PF08734 GYD: GYD domain; Int 30.2 2E+02 0.0043 21.2 5.7 45 70-114 22-67 (91)
267 PRK10629 EnvZ/OmpR regulon mod 30.0 2.8E+02 0.0061 22.0 7.4 69 263-338 36-108 (127)
268 COG2608 CopZ Copper chaperone 29.5 1.6E+02 0.0036 20.3 4.9 45 263-309 4-48 (71)
269 PF03439 Spt5-NGN: Early trans 28.5 1.1E+02 0.0024 22.1 4.0 35 289-323 32-67 (84)
270 COG5470 Uncharacterized conser 27.8 1.3E+02 0.0028 22.4 4.1 42 277-318 23-71 (96)
271 KOG4365 Uncharacterized conser 26.8 11 0.00025 35.9 -1.7 75 143-218 5-79 (572)
272 PF14893 PNMA: PNMA 26.4 44 0.00096 31.4 2.0 60 263-322 19-84 (331)
273 PF14026 DUF4242: Protein of u 26.3 2.4E+02 0.0053 20.0 7.5 55 59-113 3-66 (77)
274 KOG4213 RNA-binding protein La 24.6 1.1E+02 0.0023 25.8 3.6 58 141-202 111-169 (205)
275 PF03439 Spt5-NGN: Early trans 24.2 1.1E+02 0.0025 22.0 3.4 34 82-116 33-66 (84)
276 PF08544 GHMP_kinases_C: GHMP 23.7 2.6E+02 0.0057 19.5 6.0 44 71-115 37-80 (85)
277 KOG4213 RNA-binding protein La 23.4 97 0.0021 26.0 3.1 53 57-113 112-169 (205)
278 KOG3424 40S ribosomal protein 22.2 1.5E+02 0.0032 23.0 3.7 45 153-198 35-84 (132)
279 KOG4592 Uncharacterized conser 21.9 82 0.0018 31.9 2.9 9 57-65 234-242 (728)
280 KOG3982 Runt and related trans 21.8 1E+02 0.0022 29.0 3.3 11 210-220 213-223 (475)
281 PF11823 DUF3343: Protein of u 21.7 1.5E+02 0.0033 20.6 3.6 23 301-323 2-24 (73)
282 PTZ00191 60S ribosomal protein 21.6 2.3E+02 0.005 23.0 4.9 53 265-318 84-140 (145)
283 PF11411 DNA_ligase_IV: DNA li 21.6 68 0.0015 19.1 1.4 15 273-287 20-34 (36)
284 cd04889 ACT_PDH-BS-like C-term 21.4 2.3E+02 0.005 18.0 6.1 41 71-111 13-55 (56)
285 PF15053 Njmu-R1: Mjmu-R1-like 21.3 4.8E+02 0.01 24.6 7.4 40 53-93 34-83 (353)
286 PRK10629 EnvZ/OmpR regulon mod 21.1 4.3E+02 0.0093 21.0 7.7 68 58-129 37-108 (127)
287 COG5638 Uncharacterized conser 20.4 4E+02 0.0087 25.6 6.8 77 257-337 141-294 (622)
288 COG0445 GidA Flavin-dependent 20.2 3.6E+02 0.0079 27.4 6.9 91 186-308 239-343 (621)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.3e-46 Score=354.45 Aligned_cols=278 Identities=28% Similarity=0.462 Sum_probs=222.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
..+|||+|||.++|+++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++.||+..|.|++|+|.|+.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 4679999999999999999999999999999999875 458999999999999999999999999999999999866
Q ss_pred cCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-
Q 014230 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS- 210 (428)
Q Consensus 132 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g- 210 (428)
... ....++|||+|||..+++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|.+|++.|+|..+.|
T Consensus 83 ~~~---~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 83 SSD---SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccc---ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 542 2345689999999999999999999999999999999998888999999999999999999999999998876
Q ss_pred -eeEEEEEccCCCCCCCCcCCcc-------cccchhcc------------C---------C------------------C
Q 014230 211 -RQIRCNWATKGAGNNEDKQSSD-------AKSVVELT------------N---------G------------------S 243 (428)
Q Consensus 211 -~~i~v~~~~~~~~~~~~~~~~~-------~~~~~~~~------------~---------~------------------~ 243 (428)
+.|.|.++.............. ........ . . .
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 6788888765432111100000 00000000 0 0 0
Q ss_pred CCCCccc-----------CCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEE
Q 014230 244 SEDGKET-----------TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVR 306 (428)
Q Consensus 244 ~~~~~~~-----------~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~ 306 (428)
....... .....+.....+.+|||+|||+++++++|+++|++|| .|.++++.++ ||||||+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG--~v~~v~i~~d~~t~~skG~aFV~ 317 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFG--AVQNVKIIRDLTTNQCKGYGFVS 317 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEeEcCCCCCccceEEEE
Confidence 0000000 0000111123345799999999999999999999999 8999999865 7999999
Q ss_pred eCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 307 YSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 307 f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
|.+.++|.+|+..|||. .|+||.|+|+|+.++
T Consensus 318 F~~~~~A~~Ai~~lnG~---~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 318 MTNYDEAAMAILSLNGY---TLGNRVLQVSFKTNK 349 (352)
T ss_pred ECCHHHHHHHHHHhCCC---EECCeEEEEEEccCC
Confidence 99999999999999999 999999999998765
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-44 Score=304.63 Aligned_cols=236 Identities=41% Similarity=0.743 Sum_probs=202.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccC
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (428)
...|||||+||+.++||+-|..+|+..|+|.+++++.+ +|+|.|+....
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------ELKVNWATAPG 52 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------hhccccccCcc
Confidence 44589999999999999999999999999999998877 55666665543
Q ss_pred Ccc--CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014230 134 QRE--DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (428)
Q Consensus 134 ~~~--~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 211 (428)
... ....+..+||+.|...++.++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|+.||..|+|..|++|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 222 223367899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeE
Q 014230 212 QIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI 291 (428)
Q Consensus 212 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i 291 (428)
.||-.|+.++......+ ...... ......+..++|||+||+..+||++|++.|++|| .|
T Consensus 133 ~IRTNWATRKp~e~n~~----~ltfde---------------V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG--~I 191 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGK----PLTFDE---------------VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG--PI 191 (321)
T ss_pred eeeccccccCccccCCC----CccHHH---------------HhccCCCCCceEEeCCcCccccHHHHHHhcccCC--cc
Confidence 99999998876221111 111111 1122345568999999999999999999999999 99
Q ss_pred EEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCCC
Q 014230 292 EEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPP 344 (428)
Q Consensus 292 ~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 344 (428)
.+||+.+++||+||.|++.|.|.+|+..||+. +++|..++|+|+|.....
T Consensus 192 ~EVRvFk~qGYaFVrF~tkEaAahAIv~mNnt---ei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 192 QEVRVFKDQGYAFVRFETKEAAAHAIVQMNNT---EIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred eEEEEecccceEEEEecchhhHHHHHHHhcCc---eeCceEEEEeccccCCCC
Confidence 99999999999999999999999999999999 999999999999976443
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8e-43 Score=313.43 Aligned_cols=245 Identities=24% Similarity=0.393 Sum_probs=216.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcc-cCceeeee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHL-FGQPIKVN 127 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~-~g~~l~v~ 127 (428)
+...+.|||+.||.++.|+||..+|++.|+|-+++++.|+ ++|||||.|++.+.|.+|++.||+..| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 3556789999999999999999999999999999999984 679999999999999999999999998 58999998
Q ss_pred cccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCC-CceEEEEeecCC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Q 014230 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQK-TGRSRGFGFVSFRNQQDAQSAINDLTG 205 (428)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~ 205 (428)
.+..+ ++|||+|||+.+++++|++.+++.+ .|.+|.+..++. ..++||||||+|.+...|..|.+.|-.
T Consensus 160 ~Svan---------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 160 VSVAN---------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred Eeeec---------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 76444 6999999999999999999999986 477777776543 358999999999999999999888743
Q ss_pred --ceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHH
Q 014230 206 --KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283 (428)
Q Consensus 206 --~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F 283 (428)
..++|..+.|.|+.+........ ....+.|||+||+.++|+|.|+++|
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~------------------------------ms~VKvLYVRNL~~~tTeE~lk~~F 280 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDT------------------------------MSKVKVLYVRNLMESTTEETLKKLF 280 (506)
T ss_pred CceeecCCcceeeccCcccCCChhh------------------------------hhheeeeeeeccchhhhHHHHHHHH
Confidence 46799999999999876544321 1123689999999999999999999
Q ss_pred hccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCC
Q 014230 284 HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343 (428)
Q Consensus 284 ~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 343 (428)
+.|| .|.+|+.++| ||||+|.++++|.+|++.+||+ +|+|..|.|.++|+...
T Consensus 281 ~~~G--~veRVkk~rD--YaFVHf~eR~davkAm~~~ngk---eldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 281 NEFG--KVERVKKPRD--YAFVHFAEREDAVKAMKETNGK---ELDGSPIEVTLAKPVDK 333 (506)
T ss_pred Hhcc--ceEEeecccc--eeEEeecchHHHHHHHHHhcCc---eecCceEEEEecCChhh
Confidence 9999 9999999977 9999999999999999999999 99999999999997644
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-42 Score=290.86 Aligned_cols=279 Identities=28% Similarity=0.436 Sum_probs=228.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCC----ceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~----g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
....|.|.-||..+|+|||+.+|...|+|++|++++|+.+ ||+||.|.+++||++|+..|||..+..++|+|.|+.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 3455999999999999999999999999999999999854 799999999999999999999999999999999998
Q ss_pred ccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014230 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (428)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 210 (428)
+.+.... ...|||++||+.++..||..+|++||.|..-+|+.|..+|.+||.+||+|+..++|++||..|||..-.|
T Consensus 120 PSs~~Ik---~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g 196 (360)
T KOG0145|consen 120 PSSDSIK---DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 196 (360)
T ss_pred CChhhhc---ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCC
Confidence 8765433 3589999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred --eeEEEEEccCCCCCCCCcCCcc--cccchhccCCCCC--------------------------CCcccCCCCCCCCCC
Q 014230 211 --RQIRCNWATKGAGNNEDKQSSD--AKSVVELTNGSSE--------------------------DGKETTNTEAPENNP 260 (428)
Q Consensus 211 --~~i~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~ 260 (428)
.+|.|+|+.............. ..+........+. ..........+....
T Consensus 197 ~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~ 276 (360)
T KOG0145|consen 197 CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPG 276 (360)
T ss_pred CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCC
Confidence 5788998865433222110000 0000000000000 000011112233334
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
...+|||.||.++.+|.-|.++|.+|| .|..|++.|| |||+||++.+.++|..|+..|||. .+++|.|.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFG--Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy---~lg~rvLQ 351 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFG--AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY---RLGDRVLQ 351 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCccc--ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCc---cccceEEE
Confidence 468999999999999999999999999 9999999998 899999999999999999999999 99999999
Q ss_pred EeeCCCC
Q 014230 335 CSWGSKP 341 (428)
Q Consensus 335 v~~a~~~ 341 (428)
|+|..++
T Consensus 352 VsFKtnk 358 (360)
T KOG0145|consen 352 VSFKTNK 358 (360)
T ss_pred EEEecCC
Confidence 9997654
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.7e-41 Score=326.48 Aligned_cols=245 Identities=23% Similarity=0.386 Sum_probs=207.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeec---CCCceEEEEEccHHHHHHHHHHhCCCccc-Cceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLF-GQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~ 128 (428)
+...++|||+|||.+++|++|+++|+.||.|.+|++++| +++|||||+|.+.++|++|++.||+..+. |+.|.|.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 345588999999999999999999999999999999887 35799999999999999999999999885 78888876
Q ss_pred ccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCC-ceEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-
Q 014230 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVM-WDQKTGRSRGFGFVSFRNQQDAQSAINDLTG- 205 (428)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~i~-~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~- 205 (428)
+. ..++|||+|||.++++++|.++|+.++. +.++.+. .+...++++|||||+|.+.++|..|++.|+.
T Consensus 135 S~---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 135 SV---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred cc---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 53 2468999999999999999999999864 4444443 2234568899999999999999999998864
Q ss_pred -ceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHh
Q 014230 206 -KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284 (428)
Q Consensus 206 -~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 284 (428)
..++|+.|.|.|+.+....... .....++|||+||+.++|+++|+++|+
T Consensus 206 ki~l~Gr~I~VdwA~p~~~~d~~------------------------------~~~~~k~LfVgNL~~~~tee~L~~~F~ 255 (578)
T TIGR01648 206 RIQLWGHVIAVDWAEPEEEVDED------------------------------VMAKVKILYVRNLMTTTTEEIIEKSFS 255 (578)
T ss_pred ceEecCceEEEEeeccccccccc------------------------------ccccccEEEEeCCCCCCCHHHHHHHHH
Confidence 4678999999998765322110 111236899999999999999999999
Q ss_pred cc--CCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCC
Q 014230 285 SL--GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343 (428)
Q Consensus 285 ~~--G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 343 (428)
.| | .|++|++.+ +||||+|++.++|.+|++.||+. .|+|+.|+|+|++.+..
T Consensus 256 ~f~~G--~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG~---~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 256 EFKPG--KVERVKKIR--DYAFVHFEDREDAVKAMDELNGK---ELEGSEIEVTLAKPVDK 309 (578)
T ss_pred hcCCC--ceEEEEeec--CeEEEEeCCHHHHHHHHHHhCCC---EECCEEEEEEEccCCCc
Confidence 99 8 999998774 69999999999999999999999 99999999999986543
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.4e-40 Score=327.01 Aligned_cols=276 Identities=20% Similarity=0.236 Sum_probs=213.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHh--CCCcccCceeeeeccccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL--NGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~~~~~ 132 (428)
++++|||+|||.++++++|+++|++||.|.+|++++++ +||||+|.+.++|.+|+..+ ++..+.|+.|.|.|+...
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k--~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK--RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC--CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 46899999999999999999999999999999998754 79999999999999999864 778899999999998654
Q ss_pred CCccC---------CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 014230 133 GQRED---------TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (428)
Q Consensus 133 ~~~~~---------~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 203 (428)
..... .....+|+|+||+..+++++|+++|+.||.|.+|.++++. .+|+|||+|.+.++|.+|++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHh
Confidence 31111 1122478999999999999999999999999999998653 2478999999999999999999
Q ss_pred CCceeCC--eeEEEEEccCCCCCC---CCcC---Cc-------c--cc-----cchhc---------cCCCCCC------
Q 014230 204 TGKWLGS--RQIRCNWATKGAGNN---EDKQ---SS-------D--AK-----SVVEL---------TNGSSED------ 246 (428)
Q Consensus 204 ~~~~~~g--~~i~v~~~~~~~~~~---~~~~---~~-------~--~~-----~~~~~---------~~~~~~~------ 246 (428)
||..+.+ +.|+|.|++...... ..+. .. . .. ..... ..+....
T Consensus 155 ng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (481)
T TIGR01649 155 NGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAP 234 (481)
T ss_pred cCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCc
Confidence 9999854 689999987543210 0000 00 0 00 00000 0000000
Q ss_pred -----Ccc--------------------cCCCCCCCCCCCceeEEEcCCCc-ccCHHHHHHHHhccCCeeEEEEEEeCC-
Q 014230 247 -----GKE--------------------TTNTEAPENNPQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (428)
Q Consensus 247 -----~~~--------------------~~~~~~~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~~~i~~i~i~~~- 299 (428)
... ......+...++.++|||+|||+ .+|+++|+++|+.|| .|.+|+++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG--~V~~vki~~~~ 312 (481)
T TIGR01649 235 LAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG--NVERVKFMKNK 312 (481)
T ss_pred ccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCC
Confidence 000 00000112234668999999998 699999999999999 9999999987
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 300 KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 300 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
+|+|||+|.+.++|..|+..|||. .|.|++|+|.+++..
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~---~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGV---KLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC---EECCceEEEEEcccc
Confidence 699999999999999999999999 899999999998764
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.7e-41 Score=338.43 Aligned_cols=247 Identities=31% Similarity=0.544 Sum_probs=216.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccC
Q 014230 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (428)
Q Consensus 58 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (428)
+|||+|||.++||++|+++|++||.|.+|++++++. .|||||+|.+.++|++|++.+++..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999998754 5899999999999999999999999999999999986443
Q ss_pred CccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 014230 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (428)
Q Consensus 134 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i 213 (428)
.. ......+|||+|||.++++++|+++|+.||.|.+|++..+ .+++++|||||+|.+.++|.+|++.++|..+.++.|
T Consensus 82 ~~-~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 SL-RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred cc-cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 22 2234568999999999999999999999999999999988 578899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEE
Q 014230 214 RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293 (428)
Q Consensus 214 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~ 293 (428)
.|.....+.... .......++|||+|||.++|+++|+++|+.|| .|.+
T Consensus 160 ~v~~~~~~~~~~------------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG--~i~~ 207 (562)
T TIGR01628 160 YVGRFIKKHERE------------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFG--EITS 207 (562)
T ss_pred EEeccccccccc------------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcC--CEEE
Confidence 997654432211 00112236899999999999999999999999 8999
Q ss_pred EEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCccccc----CeeEEEeeCCCC
Q 014230 294 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF----GKQMKCSWGSKP 341 (428)
Q Consensus 294 i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~----g~~l~v~~a~~~ 341 (428)
+.+.++ +|||||+|.+.++|.+|++.|||. .+. |+.|.|.++..+
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~---~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGK---KIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred EEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCc---EecccccceeeEeecccCh
Confidence 988865 789999999999999999999999 899 999999887543
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7.1e-41 Score=337.69 Aligned_cols=265 Identities=30% Similarity=0.479 Sum_probs=223.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
+...+|||+|||.++++++|+++|+.||.|.+|++..+. ++|||||+|.+.++|.+|++.+|+..+.|+.|.|....
T Consensus 86 ~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 86 SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 345679999999999999999999999999999998864 56999999999999999999999999999999998765
Q ss_pred ccCCcc--CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014230 131 ASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (428)
Q Consensus 131 ~~~~~~--~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 208 (428)
.+..+. .....++|||+|||.++++++|+++|+.||.|.++.+..+ .+++++|||||+|.+.++|.+|++.+++..+
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i 244 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKI 244 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEe
Confidence 544432 3345578999999999999999999999999999999988 5789999999999999999999999999999
Q ss_pred C----CeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHh
Q 014230 209 G----SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284 (428)
Q Consensus 209 ~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 284 (428)
. |+.+.|.++..+.......... .... ..........++|||+||+.++|+++|+++|+
T Consensus 245 ~~~~~g~~l~v~~a~~k~er~~~~~~~----~~~~-------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~ 307 (562)
T TIGR01628 245 GLAKEGKKLYVGRAQKRAEREAELRRK----FEEL-------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFS 307 (562)
T ss_pred cccccceeeEeecccChhhhHHHHHhh----HHhh-------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHH
Confidence 9 9999998876654321100000 0000 00001122346899999999999999999999
Q ss_pred ccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 285 SLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 285 ~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
.|| .|.+|++.++ +|||||+|.+.++|.+|+..|||. .++|++|.|.|+..+
T Consensus 308 ~~G--~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~---~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 308 ECG--EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGR---MLGGKPLYVALAQRK 364 (562)
T ss_pred hcC--CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCC---eeCCceeEEEeccCc
Confidence 999 9999999865 699999999999999999999999 999999999998764
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.3e-40 Score=322.97 Aligned_cols=280 Identities=19% Similarity=0.252 Sum_probs=217.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccC--ceeeeecccc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAYA 131 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~ 131 (428)
+...+|+|+||+..+|+++|+++|+.||.|.+|++++++.+++|||+|.+.++|.+|++.|||..|.| +.|+|.|++.
T Consensus 94 ~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 94 NKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred CceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 34457999999999999999999999999999999888777899999999999999999999999975 4788877653
Q ss_pred cCC--------------------cc-------------------------------------------------------
Q 014230 132 SGQ--------------------RE------------------------------------------------------- 136 (428)
Q Consensus 132 ~~~--------------------~~------------------------------------------------------- 136 (428)
..- +.
T Consensus 174 ~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
T TIGR01649 174 TRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRP 253 (481)
T ss_pred CCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcc
Confidence 110 00
Q ss_pred -----------------CCCCcceeEecCCCc-ccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 014230 137 -----------------DTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 198 (428)
Q Consensus 137 -----------------~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ 198 (428)
...++++|||+||+. .+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~ 328 (481)
T TIGR01649 254 AYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQL 328 (481)
T ss_pred cccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHH
Confidence 012456899999998 69999999999999999999998762 6899999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEccCCCCCCCCcCCcc-c-ccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCH
Q 014230 199 AINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD-A-KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ 276 (428)
Q Consensus 199 a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~ 276 (428)
|+..|||..+.|+.|+|.++.............. . ..........................++..+|||+|||.++|+
T Consensus 329 Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~te 408 (481)
T TIGR01649 329 ALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSE 408 (481)
T ss_pred HHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCH
Confidence 9999999999999999999866433221110000 0 0000000000000000000111122456789999999999999
Q ss_pred HHHHHHHhccCCeeEEEEEEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee------EEEeeCCCC
Q 014230 277 LDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ------MKCSWGSKP 341 (428)
Q Consensus 277 ~~L~~~F~~~G~~~i~~i~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~------l~v~~a~~~ 341 (428)
++|+++|+.||...+..+++... +++|||+|.+.++|.+|+..||+. .|.++. |+|+|++.+
T Consensus 409 e~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~---~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 409 EDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHH---QLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCC---ccCCCCCCccceEEEEeccCC
Confidence 99999999999434888888754 599999999999999999999999 899885 999998753
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.7e-39 Score=313.95 Aligned_cols=167 Identities=22% Similarity=0.404 Sum_probs=150.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
..++|||+|||+++++++|+++|++||+|.+|++++++ ++|||||+|.+.++|.+|++.+||..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 34679999999999999999999999999999998874 57999999999999999999999999999999998764
Q ss_pred ccCCc--------cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 014230 131 ASGQR--------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (428)
Q Consensus 131 ~~~~~--------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 202 (428)
..... ......++|||+||++++++++|+++|+.||.|.++++.+|+.+++++|||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 33211 1123457999999999999999999999999999999999998999999999999999999999999
Q ss_pred hCCceeCCeeEEEEEccCC
Q 014230 203 LTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 203 l~~~~~~g~~i~v~~~~~~ 221 (428)
||+..++|+.|+|.++...
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999998753
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=8.8e-38 Score=308.37 Aligned_cols=282 Identities=24% Similarity=0.388 Sum_probs=218.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
....++|||+|||..+++++|+++|+.||.|.+|+++.++ ++|||||+|.+.++|.+|+. ++|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456889999999999999999999999999999999874 46899999999999999995 899999999999987
Q ss_pred ccccCCc---------cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 014230 129 AYASGQR---------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199 (428)
Q Consensus 129 ~~~~~~~---------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a 199 (428)
+...... ...+..++|||+|||..+++++|+++|+.||.|..|.+..++.+++++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6432211 1123358999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEEccCCCCCCCCcCCcc--------c----------------------ccchhccC-------C
Q 014230 200 INDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD--------A----------------------KSVVELTN-------G 242 (428)
Q Consensus 200 ~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~--------~----------------------~~~~~~~~-------~ 242 (428)
+..|+|..+.|+.|+|.|+.............. . ........ .
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQK 324 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcc
Confidence 999999999999999999753221110000000 0 00000000 0
Q ss_pred CCCC---C--c-----------ccCCCCCCC--CCCCceeEEEcCCCcccC----------HHHHHHHHhccCCeeEEEE
Q 014230 243 SSED---G--K-----------ETTNTEAPE--NNPQYTTVYVGNLAPEVT----------QLDLHRHFHSLGAGVIEEV 294 (428)
Q Consensus 243 ~~~~---~--~-----------~~~~~~~~~--~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~G~~~i~~i 294 (428)
.... . . .......+. .....++|+|.||....+ .+||++.|++|| .|..|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G--~v~~v 402 (457)
T TIGR01622 325 LQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYG--GVVHI 402 (457)
T ss_pred ccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcC--CeeEE
Confidence 0000 0 0 000000001 234568999999955433 368999999999 88998
Q ss_pred EEeC--CccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 295 RVQR--DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 295 ~i~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
.+.. ..|++||+|.+.++|.+|++.|||. +|+|+.|.+.|...
T Consensus 403 ~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr---~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 403 YVDTKNSAGKIYLKFSSVDAALAAFQALNGR---YFGGKMITAAFVVN 447 (457)
T ss_pred EEeCCCCceeEEEEECCHHHHHHHHHHhcCc---ccCCeEEEEEEEcH
Confidence 8873 3799999999999999999999999 99999999998653
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.2e-37 Score=311.64 Aligned_cols=273 Identities=18% Similarity=0.258 Sum_probs=210.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcc------------CCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSST------------GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL 119 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~------------G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 119 (428)
.....++|||+|||..+|+++|.++|+.+ +.|..+.+. +.+|||||+|.+.++|..|+ .|+|..|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~--~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN--KEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC--CCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 34566899999999999999999999975 244444443 34589999999999999999 5999999
Q ss_pred cCceeeeecccccCCc--------------------------cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEE
Q 014230 120 FGQPIKVNWAYASGQR--------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173 (428)
Q Consensus 120 ~g~~l~v~~~~~~~~~--------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i 173 (428)
.|+.|+|......... ......++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999999754322100 01123478999999999999999999999999999999
Q ss_pred eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCC
Q 014230 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNT 253 (428)
Q Consensus 174 ~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (428)
+.++.+|.++|||||+|.+.++|..|+..|+|..++|+.|.|.++...................... ......
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 400 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLA-------KALSQS 400 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccccccccc-------ccchhh
Confidence 9998899999999999999999999999999999999999999986543322111110000000000 000000
Q ss_pred CCCCCCCCceeEEEcCCCcc--c--------CHHHHHHHHhccCCeeEEEEEEeCC---------ccEEEEEeCCHHHHH
Q 014230 254 EAPENNPQYTTVYVGNLAPE--V--------TQLDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAA 314 (428)
Q Consensus 254 ~~~~~~~~~~~l~V~nLp~~--~--------t~~~L~~~F~~~G~~~i~~i~i~~~---------~g~afV~f~~~~~A~ 314 (428)
.......+..+|+|.||... + ..++|+++|++|| .|..|.|.++ +|++||+|.+.++|.
T Consensus 401 ~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G--~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~ 478 (509)
T TIGR01642 401 ILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG--PLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAE 478 (509)
T ss_pred hccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC--CeeEEEeeccCcCCCcCCCcceEEEEECCHHHHH
Confidence 01112345688999999642 1 2368999999999 9999999864 489999999999999
Q ss_pred HHHHHhcCCCcccccCeeEEEeeCC
Q 014230 315 LAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 315 ~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
+|+..|||. .|+|+.|.|.|..
T Consensus 479 ~A~~~lnGr---~~~gr~v~~~~~~ 500 (509)
T TIGR01642 479 KAMEGMNGR---KFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHcCCC---EECCeEEEEEEeC
Confidence 999999999 9999999999854
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=277.95 Aligned_cols=168 Identities=29% Similarity=0.472 Sum_probs=148.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCC-cccC--ceee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGR-HLFG--QPIK 125 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~-~~~g--~~l~ 125 (428)
+.+..+|||+-||..++|.||+++|++||.|.+|.+++|+. +|||||.|.+.++|.+|+..|++. .|.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 35556799999999999999999999999999999999985 589999999999999999998885 4776 5777
Q ss_pred eecccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 014230 126 VNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (428)
Q Consensus 126 v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 205 (428)
|+++....++ ...+++|||+.|++.++|.||+++|++||.|++|.|++| ..+.+|||+||.|.+.+.|..||+.||+
T Consensus 111 vk~Ad~E~er--~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 111 VKYADGERER--IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ecccchhhhc--cccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhcc
Confidence 7777655444 356789999999999999999999999999999999999 5789999999999999999999999999
Q ss_pred ce-eC--CeeEEEEEccCCCC
Q 014230 206 KW-LG--SRQIRCNWATKGAG 223 (428)
Q Consensus 206 ~~-~~--g~~i~v~~~~~~~~ 223 (428)
.. +. ..+|.|+|++.++.
T Consensus 188 ~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred ceeeccCCCceEEEecccCCC
Confidence 64 54 46899999987663
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=272.84 Aligned_cols=277 Identities=23% Similarity=0.417 Sum_probs=216.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
.||||++||++++.++|.++|+.+|+|..+.++.++ ++||+||.|.-.+|+.+|+...++..|.|+.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999999999998875 4699999999999999999999999999999999988655
Q ss_pred CCcc---------------------C--CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEE
Q 014230 133 GQRE---------------------D--TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 189 (428)
Q Consensus 133 ~~~~---------------------~--~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~ 189 (428)
.+.. . ..+..+|.|.|||+.+...+|+.+|+.||.|..|.|.+.+ .++-.|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEE
Confidence 4322 0 1235789999999999999999999999999999999664 56666999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCCCcCC-------------------cccc----------cc-hhc
Q 014230 190 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS-------------------SDAK----------SV-VEL 239 (428)
Q Consensus 190 f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~-------------------~~~~----------~~-~~~ 239 (428)
|.+..+|..|++.+|+..|+||+|.|.|+..+......... .+.. .. ...
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 99999999999999999999999999999776543321100 0000 00 000
Q ss_pred cCC---------CCCC------Cc----------ccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEE
Q 014230 240 TNG---------SSED------GK----------ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (428)
Q Consensus 240 ~~~---------~~~~------~~----------~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i 294 (428)
.+. .+.. .. .......++......+|||+|||+++|+++|.+.|++|| .|.++
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG--~v~ya 322 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG--EVKYA 322 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhc--cceeE
Confidence 000 0000 00 000001122333458999999999999999999999999 77777
Q ss_pred EEeCC------ccEEEEEeCCHHHHHHHHHHh-----cC-CCcccccCeeEEEeeCC
Q 014230 295 RVQRD------KGFGFVRYSTHAEAALAIQMG-----NT-TQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 295 ~i~~~------~g~afV~f~~~~~A~~A~~~l-----~g-~~~~~~~g~~l~v~~a~ 339 (428)
.+..+ +|+|||.|.+..+|..|+... .| . .+.||.|+|..+-
T Consensus 323 ~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~---ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 323 IIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSV---LLDGRLLKVTLAV 376 (678)
T ss_pred EEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceE---EEeccEEeeeecc
Confidence 66654 799999999999999999876 23 4 6889999998754
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.4e-32 Score=268.03 Aligned_cols=176 Identities=24% Similarity=0.469 Sum_probs=150.1
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
..++|||+|||+++++++|+++|+.||.|.+|++.+|+.+++++|||||+|.+.++|.+|++.|||..++|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~ 299 (428)
........ ...........++|||+|||+++++++|+++|+.|| .|.++++.++
T Consensus 186 ~~p~a~~~------------------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG--~I~svrl~~D 239 (612)
T TIGR01645 186 NMPQAQPI------------------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARA 239 (612)
T ss_pred cccccccc------------------------cccccccccccceEEeecCCCCCCHHHHHHHHhhcC--CeeEEEEEec
Confidence 22110000 000001112346899999999999999999999999 9999999864
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCCC
Q 014230 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPP 344 (428)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 344 (428)
||||||+|.+.++|.+|++.||+. .++|+.|+|.++..+..+
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~---elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLF---DLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCC---eeCCeEEEEEecCCCccc
Confidence 799999999999999999999999 999999999998865443
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-32 Score=253.99 Aligned_cols=237 Identities=29% Similarity=0.520 Sum_probs=210.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC-CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCCcc
Q 014230 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (428)
Q Consensus 58 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (428)
.|||+ +++||.+|+++|+++|+|.+|++++|- +-|||||.|.++++|++|+..+|...+.|++|+|.|+.....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~-- 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS-- 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc--
Confidence 58999 999999999999999999999999987 228999999999999999999999999999999999865543
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
.|||.||+++++..+|.++|+.||.|.+|++..+. .| ++|| ||+|.++++|.+|++.+||..+.++.|.|.
T Consensus 78 ------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 78 ------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred ------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 39999999999999999999999999999999984 45 9999 999999999999999999999999999998
Q ss_pred EccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEE
Q 014230 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (428)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i 296 (428)
....+......... .....+.++|.|++.+++++.|+++|+.|| .|.++.+
T Consensus 149 ~~~~~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g--~i~s~~v 199 (369)
T KOG0123|consen 149 LFERKEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYG--SITSVAV 199 (369)
T ss_pred eccchhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccC--cceEEEE
Confidence 77665443322211 111226799999999999999999999999 9999999
Q ss_pred eCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 297 QRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 297 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
+++ ++|+||.|.+.++|..|+..|++. .+.++.+.|.-+.+
T Consensus 200 ~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~---~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 200 MRDSIGKSKGFGFVNFENPEDAKKAVETLNGK---IFGDKELYVGRAQK 245 (369)
T ss_pred eecCCCCCCCccceeecChhHHHHHHHhccCC---cCCccceeeccccc
Confidence 875 799999999999999999999999 88888888877655
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1e-31 Score=249.82 Aligned_cols=168 Identities=25% Similarity=0.452 Sum_probs=152.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
.....++|||+|||.++|+++|+++|+.||+|++|+++.++. +|||||+|.+.++|++|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 455678999999999999999999999999999999988753 5899999999999999999999999999999999
Q ss_pred cccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014230 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (428)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 207 (428)
++.+... ....++|||+|||.++++++|+++|++||.|+.++|++|+.+++++|||||+|.+.++|++|++.|++..
T Consensus 183 ~a~p~~~---~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 183 YARPGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ccccccc---ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 9865432 2335689999999999999999999999999999999999899999999999999999999999999998
Q ss_pred eCC--eeEEEEEccCCC
Q 014230 208 LGS--RQIRCNWATKGA 222 (428)
Q Consensus 208 ~~g--~~i~v~~~~~~~ 222 (428)
+.+ +.|+|.++....
T Consensus 260 ~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 260 PEGGSQPLTVRLAEEHG 276 (346)
T ss_pred cCCCceeEEEEECCccc
Confidence 865 789999887643
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1e-31 Score=249.72 Aligned_cols=167 Identities=29% Similarity=0.460 Sum_probs=149.4
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
.....++|||+|||+++++++|+++|+.||.|++|+|++|+.+++++|||||+|.++++|++|++.|++..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEE
Q 014230 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (428)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i 296 (428)
++.+.... ...++|||+|||.++|+++|+++|++|| .|.++++
T Consensus 183 ~a~p~~~~-----------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG--~V~~v~i 225 (346)
T TIGR01659 183 YARPGGES-----------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG--QIVQKNI 225 (346)
T ss_pred cccccccc-----------------------------------cccceeEEeCCCCcccHHHHHHHHHhcC--CEEEEEE
Confidence 87642210 0125799999999999999999999999 8999998
Q ss_pred eCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccC--eeEEEeeCCCCCC
Q 014230 297 QRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPTP 343 (428)
Q Consensus 297 ~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a~~~~~ 343 (428)
.++ +|||||+|.+.++|.+|++.||+. .+.+ ++|+|.|++....
T Consensus 226 ~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~---~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 226 LRDKLTGTPRGVAFVRFNKREEAQEAISALNNV---IPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred eecCCCCccceEEEEEECCHHHHHHHHHHhCCC---ccCCCceeEEEEECCcccc
Confidence 876 589999999999999999999999 7765 7999999986543
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.8e-30 Score=225.89 Aligned_cols=163 Identities=22% Similarity=0.420 Sum_probs=147.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
|+|||+.|.+.+.|+.|+..|.+||+|++|.+.+|. .+|||||+|+-+|.|..|++.+||..+.|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 569999999999999999999999999999998874 5799999999999999999999999999999999865443
Q ss_pred CCc--------cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 014230 133 GQR--------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204 (428)
Q Consensus 133 ~~~--------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 204 (428)
... ++...-++|||..+.++.+++||+..|+.||+|..|.+-+++..+.+|||+|++|.+..+-..|+..+|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 322 223445789999999999999999999999999999999999889999999999999999999999999
Q ss_pred CceeCCeeEEEEEcc
Q 014230 205 GKWLGSRQIRCNWAT 219 (428)
Q Consensus 205 ~~~~~g~~i~v~~~~ 219 (428)
-..++|..|+|-.+.
T Consensus 274 lFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCV 288 (544)
T ss_pred hhhcccceEeccccc
Confidence 999999999997653
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-30 Score=242.89 Aligned_cols=257 Identities=31% Similarity=0.481 Sum_probs=216.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCCcc
Q 014230 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (428)
Q Consensus 59 l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (428)
|||.||+++++..+|.++|+.||.|.+|++..+. .+|| ||+|.++++|.+|+..+||..+.|+.|.|.....+..+.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 9999999999999999999999999999999976 4688 999999999999999999999999999998876655433
Q ss_pred CC-----CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014230 137 DT-----SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (428)
Q Consensus 137 ~~-----~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 211 (428)
.. ..-..++|.+++.+.+++.|.++|..+|.|.++.++.+ ..++++||+||+|.+.++|..|++.+++..+.+.
T Consensus 158 ~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 158 APLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDK 236 (369)
T ss_pred ccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCCcc
Confidence 22 23467899999999999999999999999999999988 5677999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeE
Q 014230 212 QIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI 291 (428)
Q Consensus 212 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i 291 (428)
.+.|..+..+............ .....+........|||.|++..++++.|++.|+.|| .|
T Consensus 237 ~~~V~~aqkk~e~~~~l~~~~~-----------------~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~G--eI 297 (369)
T KOG0123|consen 237 ELYVGRAQKKSEREAELKRKFE-----------------QEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFG--EI 297 (369)
T ss_pred ceeecccccchhhHHHHhhhhH-----------------hhhhhccccccccccccccCccccchhHHHHHHhccc--ce
Confidence 9999877663221111000000 0000111122336799999999999999999999999 99
Q ss_pred EEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 292 EEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 292 ~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
.++++..+ +||+||.|.+.++|.+|+..+|+. .+.++.|.|.++.
T Consensus 298 ~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~---~i~~k~l~vav~q 347 (369)
T KOG0123|consen 298 TSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGR---LIGGKPLYVAVAQ 347 (369)
T ss_pred eeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChh---hhcCCchhhhHHh
Confidence 99988865 899999999999999999999999 9999999998865
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.3e-31 Score=236.88 Aligned_cols=170 Identities=24% Similarity=0.395 Sum_probs=151.9
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCeeEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL---GSRQIR 214 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~i~ 214 (428)
+.+.-++||+-||+.|+|.||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+|+++.. ...+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 35567899999999999999999999999999999999999999999999999999999999999998754 357888
Q ss_pred EEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEE
Q 014230 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (428)
Q Consensus 215 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i 294 (428)
|++++...+.... .++|||+-|+..+||++++++|++|| .|++|
T Consensus 111 vk~Ad~E~er~~~----------------------------------e~KLFvg~lsK~~te~evr~iFs~fG--~Ied~ 154 (510)
T KOG0144|consen 111 VKYADGERERIVE----------------------------------ERKLFVGMLSKQCTENEVREIFSRFG--HIEDC 154 (510)
T ss_pred ecccchhhhcccc----------------------------------chhhhhhhccccccHHHHHHHHHhhC--ccchh
Confidence 9888775543311 16799999999999999999999999 99999
Q ss_pred EEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCC
Q 014230 295 RVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343 (428)
Q Consensus 295 ~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 343 (428)
+|+|+ ||||||.|.+.+.|..|++.|||...|+-+..+|.|+|+....+
T Consensus 155 ~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 155 YILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred hheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 99997 99999999999999999999999986666778999999886533
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=4e-29 Score=237.80 Aligned_cols=254 Identities=22% Similarity=0.350 Sum_probs=208.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCC
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (428)
..+.++|+|||..+..++|..+|..||+|..|.+. +..-.++|.|.++.+|.+|+..|....+...++.+.|+.....
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf 461 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVF 461 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhc
Confidence 34669999999999999999999999999998544 2222599999999999999999999999888888887643211
Q ss_pred c----------------------------------cC-------------CCCcceeEecCCCcccCHHHHHHHhccCCC
Q 014230 135 R----------------------------------ED-------------TSGHFNIFVGDLSPEVTDATLFACFSVYPS 167 (428)
Q Consensus 135 ~----------------------------------~~-------------~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~ 167 (428)
. .+ ....++|||.||+++.+.++|..+|+..|.
T Consensus 462 ~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~ 541 (725)
T KOG0110|consen 462 TEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGT 541 (725)
T ss_pred cCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCe
Confidence 0 00 011234999999999999999999999999
Q ss_pred ceEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCC
Q 014230 168 CSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSS 244 (428)
Q Consensus 168 v~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (428)
|.++.|...+.. -.+.||+||+|.+.++|..|++.|+|..++|+.|.|+++..+........
T Consensus 542 VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~--------------- 606 (725)
T KOG0110|consen 542 VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKK--------------- 606 (725)
T ss_pred EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccc---------------
Confidence 999988755322 13569999999999999999999999999999999999872221111100
Q ss_pred CCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHH
Q 014230 245 EDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQ 318 (428)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~ 318 (428)
......++.|+|+|||+..+..+++.+|..|| .+.+|+|++. +|||||+|-+..+|.+|+.
T Consensus 607 -----------~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG--qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 607 -----------KSKKKKGTKILVRNIPFEATKREVRKLFTAFG--QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred -----------cccccccceeeeeccchHHHHHHHHHHHhccc--ceeeeccchhhcchhhccceeeeccCcHHHHHHHH
Confidence 00111247899999999999999999999999 9999999975 8999999999999999999
Q ss_pred HhcCCCcccccCeeEEEeeCCCC
Q 014230 319 MGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 319 ~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
.|... .+.||+|.+.|+++.
T Consensus 674 al~ST---HlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 674 ALGST---HLYGRRLVLEWAKSD 693 (725)
T ss_pred hhccc---ceechhhheehhccc
Confidence 99988 899999999999863
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2.6e-28 Score=233.07 Aligned_cols=162 Identities=28% Similarity=0.492 Sum_probs=145.6
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
..+|||+|||.++++++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|.+|++.|+|..+.|+.|+|+|+.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-
Q 014230 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (428)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~- 299 (428)
.... ...++|||+|||.++++++|+++|+.|| .|..+++..+
T Consensus 83 ~~~~-----------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~~~~~~~~ 125 (352)
T TIGR01661 83 SSDS-----------------------------------IKGANLYVSGLPKTMTQHELESIFSPFG--QIITSRILSDN 125 (352)
T ss_pred cccc-----------------------------------cccceEEECCccccCCHHHHHHHHhccC--CEEEEEEEecC
Confidence 3211 0125799999999999999999999999 8888888654
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHhcCCCcccccC--eeEEEeeCCCCC
Q 014230 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPT 342 (428)
Q Consensus 300 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a~~~~ 342 (428)
+|||||+|.+.++|.+|++.|||. .+.| ++|+|.|++.+.
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~---~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGT---TPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCC---ccCCCceeEEEEECCCCC
Confidence 789999999999999999999999 7776 678999987654
No 24
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.96 E-value=4.5e-27 Score=209.70 Aligned_cols=281 Identities=21% Similarity=0.329 Sum_probs=230.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccC--ceeeeecc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (428)
.+++-.+++|.|+-+.+|-|-|..+|++||.|.+|..+.+.+.-.|+|+|.+.+.|..|...|+|..|.+ +.|+|.|+
T Consensus 146 ~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 146 GPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred CCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 4667778999999999999999999999999999877776665569999999999999999999998864 56777665
Q ss_pred cc----------cCCc--------c-----------------------------------------CCC-CcceeEecCC
Q 014230 130 YA----------SGQR--------E-----------------------------------------DTS-GHFNIFVGDL 149 (428)
Q Consensus 130 ~~----------~~~~--------~-----------------------------------------~~~-~~~~l~v~~l 149 (428)
+- +++. . ... .+..|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 21 1110 0 001 1467888998
Q ss_pred Ccc-cCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCCCc
Q 014230 150 SPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228 (428)
Q Consensus 150 p~~-~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~ 228 (428)
... +|.+.|..+|.-||.|.+|+|++++++. |+|++.+...|..|++.|+|..|.|+.|+|.+++.........
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nkkd~-----ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~e 380 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNKKDN-----ALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPRE 380 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecCCcc-----eeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCC
Confidence 764 9999999999999999999999886644 9999999999999999999999999999999999887766666
Q ss_pred CCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeC
Q 014230 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYS 308 (428)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~ 308 (428)
...+..-..+.....................+++.+|++.|+|.+++||+|++.|..-|+..-....+.+++.+|++.+.
T Consensus 381 gq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~ 460 (492)
T KOG1190|consen 381 GQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLE 460 (492)
T ss_pred CCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccC
Confidence 55555555555555555555556666667778889999999999999999999999998533444455567999999999
Q ss_pred CHHHHHHHHHHhcCCCcccccC-eeEEEeeCCC
Q 014230 309 THAEAALAIQMGNTTQSSYLFG-KQMKCSWGSK 340 (428)
Q Consensus 309 ~~~~A~~A~~~l~g~~~~~~~g-~~l~v~~a~~ 340 (428)
+.|+|..|+-.+|.+ .+++ ..|||+|++.
T Consensus 461 sveeA~~ali~~hnh---~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 461 SVEEAIQALIDLHNH---YLGENHHLRVSFSKS 490 (492)
T ss_pred ChhHhhhhccccccc---cCCCCceEEEEeecc
Confidence 999999999999998 7775 5999999875
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=227.32 Aligned_cols=265 Identities=24% Similarity=0.397 Sum_probs=196.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
..+|+|+|||+.+.+.+|..+|+.||.|.+|.|.+.+ -.|||||.|.+..+|..|++.+|+..|.|++|.|.|+.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 5679999999999999999999999999999998653 3599999999999999999999999999999999998442
Q ss_pred CCccC---------------------------------------------------------------------------
Q 014230 133 GQRED--------------------------------------------------------------------------- 137 (428)
Q Consensus 133 ~~~~~--------------------------------------------------------------------------- 137 (428)
.....
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 11000
Q ss_pred ------------CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh--
Q 014230 138 ------------TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL-- 203 (428)
Q Consensus 138 ------------~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l-- 203 (428)
..-..+|||.|||+++++++|.+.|+.||.|..+.++.++.|++++|+|||.|.+..+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 011268999999999999999999999999999999999999999999999999999999999876
Q ss_pred ---CC-ceeCCeeEEEEEccCCCCCCCCcC------CcccccchhccCCCCCCCcccCC--------------------C
Q 014230 204 ---TG-KWLGSRQIRCNWATKGAGNNEDKQ------SSDAKSVVELTNGSSEDGKETTN--------------------T 253 (428)
Q Consensus 204 ---~~-~~~~g~~i~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 253 (428)
.| ..+.||.|.|..+..+.....-.. ........-...+.......... .
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~l 436 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKL 436 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhh
Confidence 23 568999999998866543221100 00000000000000000000000 0
Q ss_pred CCCCCCCCceeEEEcCCCcccCHHHHHHHHhc----cCCeeEEEEEEeCC---------ccEEEEEeCCHHHHHHHHHHh
Q 014230 254 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS----LGAGVIEEVRVQRD---------KGFGFVRYSTHAEAALAIQMG 320 (428)
Q Consensus 254 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~----~G~~~i~~i~i~~~---------~g~afV~f~~~~~A~~A~~~l 320 (428)
..+......++|.|.|||..++...|..+... |-...+..|+.++. .||+|+.|..++.|.+|+..+
T Consensus 437 knpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 437 KNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred cCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 12223334478999999999999999877653 22223333444332 699999999999999998865
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.6e-28 Score=205.56 Aligned_cols=161 Identities=27% Similarity=0.579 Sum_probs=148.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
+-.|+|+.|...++.++|++.|.+||+|.+.++++|. ++||+||.|.+.++|+.||..+||..|.+|.|+-+|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 5569999999999999999999999999999999984 579999999999999999999999999999999999977
Q ss_pred cCCcc-------------CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 014230 132 SGQRE-------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 198 (428)
Q Consensus 132 ~~~~~-------------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ 198 (428)
+.... ..+++++|||+|++..++|++|++.|+.||.|.+|+++++ +||+||.|.+.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 65332 2367899999999999999999999999999999999955 5899999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEccCCC
Q 014230 199 AINDLTGKWLGSRQIRCNWATKGA 222 (428)
Q Consensus 199 a~~~l~~~~~~g~~i~v~~~~~~~ 222 (428)
||..+|+..+.|..++|.|.+...
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCC
Confidence 999999999999999999987644
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=4.7e-28 Score=224.59 Aligned_cols=282 Identities=23% Similarity=0.381 Sum_probs=216.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
.....|+|++.-|+..+++.||.++|+.+|.|..|.++.|+ ++|.|||+|.|.++.-.|+ .|.|..+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 34456889999999999999999999999999999999986 3689999999999999998 799999999999998
Q ss_pred cccccCCc-----------cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHH
Q 014230 128 WAYASGQR-----------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196 (428)
Q Consensus 128 ~~~~~~~~-----------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a 196 (428)
........ .-..+...|||+||-.++++++|+.+|++||.|..|.+.+|..+|.++||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 76432211 1122334499999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEEccCCCCCCCCc---CCcc---cccc--------------hhccC---------------
Q 014230 197 QSAINDLTGKWLGSRQIRCNWATKGAGNNEDK---QSSD---AKSV--------------VELTN--------------- 241 (428)
Q Consensus 197 ~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~---~~~~---~~~~--------------~~~~~--------------- 241 (428)
.+|+..|||..+.|+.|+|............. ...+ .... .....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~ 413 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLA 413 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhcc
Confidence 99999999999999999997654332221110 0000 0000 00000
Q ss_pred ---------CCCCCCcccCCCCCCCCCCCceeEEEcCC--CcccC--------HHHHHHHHhccCCeeEEEEEEeCCc-c
Q 014230 242 ---------GSSEDGKETTNTEAPENNPQYTTVYVGNL--APEVT--------QLDLHRHFHSLGAGVIEEVRVQRDK-G 301 (428)
Q Consensus 242 ---------~~~~~~~~~~~~~~~~~~~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~~~i~~i~i~~~~-g 301 (428)
.........+....+.-..+..|+.+.|+ |...| .+|+.+.+++|| .|..|.+.++. |
T Consensus 414 ~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g--~v~hi~vd~ns~g 491 (549)
T KOG0147|consen 414 KLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHG--KVCHIFVDKNSAG 491 (549)
T ss_pred ccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcC--CeeEEEEccCCCc
Confidence 00000001111112222356678888888 22222 368889999999 99999999885 9
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 302 ~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
+.||.|.+.+.|..|+++|||. ||.||.|...|-.
T Consensus 492 ~VYvrc~s~~~A~~a~~alhgr---WF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 492 CVYVRCPSAEAAGTAVKALHGR---WFAGRMITAKYLP 526 (549)
T ss_pred eEEEecCcHHHHHHHHHHHhhh---hhccceeEEEEee
Confidence 9999999999999999999999 9999999998843
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=5.8e-27 Score=231.41 Aligned_cols=175 Identities=27% Similarity=0.491 Sum_probs=149.1
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
....++|||+|||..+++++|+++|+.||.|.+|+++.|+.+++++|||||+|.+.++|.+|+. |+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456799999999999999999999999999999999999999999999999999999999996 899999999999987
Q ss_pred ccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEe
Q 014230 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (428)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~ 297 (428)
+............ ......+..++|||+|||..+|+++|+++|+.|| .|..|.+.
T Consensus 165 ~~~~~~~~~~~~~-----------------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G--~i~~v~~~ 219 (457)
T TIGR01622 165 SQAEKNRAAKAAT-----------------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG--DIEDVQLH 219 (457)
T ss_pred cchhhhhhhhccc-----------------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEE
Confidence 6543221110000 0000112257899999999999999999999999 89999988
Q ss_pred CC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 298 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 298 ~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
++ +|||||+|.+.++|.+|+..|||. .|.|++|+|.|+...
T Consensus 220 ~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~---~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 220 RDPETGRSKGFGFIQFHDAEEAKEALEVMNGF---ELAGRPIKVGYAQDS 266 (457)
T ss_pred EcCCCCccceEEEEEECCHHHHHHHHHhcCCc---EECCEEEEEEEccCC
Confidence 53 789999999999999999999999 999999999998854
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=4.5e-27 Score=229.47 Aligned_cols=196 Identities=20% Similarity=0.388 Sum_probs=158.3
Q ss_pred cHHHHHHHHHHhCCCcccCceeeeecccccCCc--cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCC
Q 014230 103 DRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG 180 (428)
Q Consensus 103 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~--~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~ 180 (428)
..++|.+|+..+++..+........+..+.... ......++|||+|||++++|++|+++|+.||.|.+++|++| .++
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG 96 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG 96 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC
Confidence 357788999988888877666666665433222 22334589999999999999999999999999999999999 789
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCC
Q 014230 181 RSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENN 259 (428)
Q Consensus 181 ~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (428)
+++|||||+|.+.++|++|++.||+..+. |+.|.|.++..
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~--------------------------------------- 137 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD--------------------------------------- 137 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc---------------------------------------
Confidence 99999999999999999999999999884 77777754421
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEe------CCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ------RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
.++|||+|||.++++++|++.|++++...+..+.+. +++|||||+|++.++|.+|++.|+... +.+.|+.|
T Consensus 138 --~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk-i~l~Gr~I 214 (578)
T TIGR01648 138 --NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR-IQLWGHVI 214 (578)
T ss_pred --CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc-eEecCceE
Confidence 168999999999999999999999973233333332 237999999999999999998886431 15789999
Q ss_pred EEeeCCCC
Q 014230 334 KCSWGSKP 341 (428)
Q Consensus 334 ~v~~a~~~ 341 (428)
.|+|+...
T Consensus 215 ~VdwA~p~ 222 (578)
T TIGR01648 215 AVDWAEPE 222 (578)
T ss_pred EEEeeccc
Confidence 99998754
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.3e-27 Score=198.43 Aligned_cols=167 Identities=28% Similarity=0.464 Sum_probs=149.6
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
+.....|.|.-||..+|++||+.+|...|+|++|++++|+.+|.+.||+||.|-+++||++|+..|||..+..++|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEe
Q 014230 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (428)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~ 297 (428)
+++...... ...|||.+||...|..+|.++|++|| .|...+|+
T Consensus 118 ARPSs~~Ik-----------------------------------~aNLYvSGlPktMtqkelE~iFs~fG--rIItSRiL 160 (360)
T KOG0145|consen 118 ARPSSDSIK-----------------------------------DANLYVSGLPKTMTQKELEQIFSPFG--RIITSRIL 160 (360)
T ss_pred ccCChhhhc-----------------------------------ccceEEecCCccchHHHHHHHHHHhh--hhhhhhhh
Confidence 988543221 14699999999999999999999999 77777776
Q ss_pred CC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccC--eeEEEeeCCCCCCC
Q 014230 298 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPTPP 344 (428)
Q Consensus 298 ~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a~~~~~~ 344 (428)
.| ||.+||.|+.+++|++|++.|||. .--| .+|.|+|+++|...
T Consensus 161 ~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~---~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 161 VDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ---KPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred hhcccceecceeEEEecchhHHHHHHHhccCC---CCCCCCCCeEEEecCCcccc
Confidence 65 899999999999999999999998 5555 68999999987443
No 31
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=7.2e-28 Score=211.60 Aligned_cols=172 Identities=24% Similarity=0.511 Sum_probs=147.6
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
++|||+.+.+++.|+.|+..|.+||+|++|.+.+|+.|+++|||+||+|+-.|.|..|++.+||..++||.|+|.+...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999732211
Q ss_pred CCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC--
Q 014230 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 299 (428)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-- 299 (428)
. ... +. -+...+.....++|||..++++++++||+.+|+.|| +|..|.+-++
T Consensus 194 p-----QAQ----pi---------------ID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~pt 247 (544)
T KOG0124|consen 194 P-----QAQ----PI---------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAPT 247 (544)
T ss_pred c-----ccc----hH---------------HHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccCC
Confidence 0 000 00 001111223447899999999999999999999999 9999999876
Q ss_pred ----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCC
Q 014230 300 ----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342 (428)
Q Consensus 300 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 342 (428)
|||+||+|.+..+-..|+..||-+ .++|.-|+|.-+-.++
T Consensus 248 ~~~HkGyGfiEy~n~qs~~eAiasMNlF---DLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 248 GRGHKGYGFIEYNNLQSQSEAIASMNLF---DLGGQYLRVGKCVTPP 291 (544)
T ss_pred CCCccceeeEEeccccchHHHhhhcchh---hcccceEecccccCCC
Confidence 899999999999999999999999 8999999998765443
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=8.7e-27 Score=186.09 Aligned_cols=168 Identities=31% Similarity=0.487 Sum_probs=146.3
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
...+|||+||+..++++.|.++|-..|+|.++++.+|+.+...+||||++|.++++|+-|++-||...+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~ 299 (428)
...... ..+.+|||+||.+++++..|.+.|+.|| +.+..-.++++
T Consensus 88 ~~~~nl----------------------------------~vganlfvgNLd~~vDe~~L~dtFsafG-~l~~~P~i~rd 132 (203)
T KOG0131|consen 88 AHQKNL----------------------------------DVGANLFVGNLDPEVDEKLLYDTFSAFG-VLISPPKIMRD 132 (203)
T ss_pred cccccc----------------------------------cccccccccccCcchhHHHHHHHHHhcc-ccccCCccccc
Confidence 322111 1125799999999999999999999999 23333354443
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCCCC
Q 014230 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPG 345 (428)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~ 345 (428)
+||+||.|++.+.+.+|+..|||. .+++++++|+|+......+
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq---~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQ---YLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccc---hhcCCceEEEEEEecCCCc
Confidence 789999999999999999999999 9999999999998765554
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=202.95 Aligned_cols=195 Identities=22% Similarity=0.385 Sum_probs=159.3
Q ss_pred EccHHHHHHHHHHhCCCcccCceeeeeccc-------ccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEE
Q 014230 101 YFDRRSAAMAILSLNGRHLFGQPIKVNWAY-------ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173 (428)
Q Consensus 101 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~-------~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i 173 (428)
..+.++|.++|..-.+. .|.|.-.. +..........+.|||+.||.++.|++|.-+|++.|.|-++++
T Consensus 41 ~~~~eaal~al~E~tgy-----~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRL 115 (506)
T KOG0117|consen 41 VQSEEAALKALLERTGY-----TLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRL 115 (506)
T ss_pred cccHHHHHHHHHHhcCc-----eEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEE
Confidence 34467778887655443 33333221 1112222345678999999999999999999999999999999
Q ss_pred eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-CCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCC
Q 014230 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTN 252 (428)
Q Consensus 174 ~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~-~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (428)
+.|+.+|.+||||||.|.+.++|.+|++.||+.+| .|+.|.|+.+..+
T Consensus 116 MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan------------------------------- 164 (506)
T KOG0117|consen 116 MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN------------------------------- 164 (506)
T ss_pred eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec-------------------------------
Confidence 99999999999999999999999999999999988 6999999887653
Q ss_pred CCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeC-------CccEEEEEeCCHHHHHHHHHHh-cCCC
Q 014230 253 TEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR-------DKGFGFVRYSTHAEAALAIQMG-NTTQ 324 (428)
Q Consensus 253 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~-------~~g~afV~f~~~~~A~~A~~~l-~g~~ 324 (428)
++|||+|||.+.++++|++.|++.+. -|.+|.+.. +||||||+|.+...|..|.+.| +++.
T Consensus 165 ----------~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~ 233 (506)
T KOG0117|consen 165 ----------CRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKI 233 (506)
T ss_pred ----------ceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCce
Confidence 78999999999999999999999984 466666654 3899999999999999998665 5543
Q ss_pred cccccCeeEEEeeCCCCCCC
Q 014230 325 SSYLFGKQMKCSWGSKPTPP 344 (428)
Q Consensus 325 ~~~~~g~~l~v~~a~~~~~~ 344 (428)
.+.|..+.|+|+.+...+
T Consensus 234 --klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 234 --KLWGNAITVDWAEPEEEP 251 (506)
T ss_pred --eecCCcceeeccCcccCC
Confidence 789999999999876443
No 34
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=1.2e-24 Score=195.74 Aligned_cols=162 Identities=22% Similarity=0.315 Sum_probs=135.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-ccCCceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFS-STGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
...|.+||.|||+++.+.+|+++|. +.|+|+-|.++.|. .+|||.|+|+++|.+++|++.||...+.|++|.|+-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3446699999999999999999997 57899999998874 5799999999999999999999999999999999754
Q ss_pred cccCC-------------------------------------------cc------------------------------
Q 014230 130 YASGQ-------------------------------------------RE------------------------------ 136 (428)
Q Consensus 130 ~~~~~-------------------------------------------~~------------------------------ 136 (428)
..... ++
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 32100 00
Q ss_pred ---------CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014230 137 ---------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (428)
Q Consensus 137 ---------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 207 (428)
..+-..++||.||...+..+.|++.|.-.|.|.++.+-.|+ .+.++|+|.++|.+.-+|..||..+++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 00334679999999999999999999999999999999885 46999999999999999999999888655
Q ss_pred eCCeeEEEE
Q 014230 208 LGSRQIRCN 216 (428)
Q Consensus 208 ~~g~~i~v~ 216 (428)
+..++..+.
T Consensus 281 ~~~~~~~~R 289 (608)
T KOG4212|consen 281 LFDRRMTVR 289 (608)
T ss_pred Cccccceee
Confidence 444444444
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=5.5e-26 Score=181.53 Aligned_cols=169 Identities=33% Similarity=0.608 Sum_probs=151.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
...||||+||+..++++-|+++|-+.|+|.++++.+++ ..||||++|.++++|+-|++-||...+.|++|+|+-+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34679999999999999999999999999999998875 46999999999999999999999999999999999887
Q ss_pred ccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
. ...+.....++||+||.+.++|.-|.+.|+.||.+.+ -+++++..++.++||+||.|.+.+.+.+|+..++|..+.
T Consensus 88 ~--~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 88 A--HQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred c--ccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 2 2233344478999999999999999999999998865 478889899999999999999999999999999999999
Q ss_pred CeeEEEEEccCCCCCC
Q 014230 210 SRQIRCNWATKGAGNN 225 (428)
Q Consensus 210 g~~i~v~~~~~~~~~~ 225 (428)
++.+.|.++..+....
T Consensus 166 nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTKG 181 (203)
T ss_pred CCceEEEEEEecCCCc
Confidence 9999999988766544
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=4.2e-25 Score=188.91 Aligned_cols=148 Identities=28% Similarity=0.513 Sum_probs=139.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCCccC
Q 014230 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRED 137 (428)
Q Consensus 58 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 137 (428)
+|||+|||..+++.+|+.+|++||.|.+|.|+++ |+||..++...|+.|++.|++..|.|..|+|+-+++++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 5999999999999999999999999999999886 99999999999999999999999999999999887773
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.+|+|+||.+.++.+||+..|++||+|.++.|++| |+||.|...++|..|++.|++..|.|+.++|..
T Consensus 76 -k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 76 -KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred -CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 44579999999999999999999999999999999865 899999999999999999999999999999999
Q ss_pred ccCCC
Q 014230 218 ATKGA 222 (428)
Q Consensus 218 ~~~~~ 222 (428)
+..+-
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 87654
No 37
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.92 E-value=2.3e-23 Score=186.12 Aligned_cols=277 Identities=20% Similarity=0.264 Sum_probs=199.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCC--CcccCceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~ 130 (428)
..+++.|+++|||.+++|+||..++.+||.|..+.+.+.++ .||++|.|.++|...+..... -.+.|++|.|.|+.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn 102 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSN 102 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch--hhhhhhcchhhhhheeecccccCccccCcceeehhhh
Confidence 44778899999999999999999999999999999999887 799999999999885543333 23678888888763
Q ss_pred ccCCc-----------------------------------cCC--CCcceeEecCCCcccCHHHHHHHhccCCCceEEEE
Q 014230 131 ASGQR-----------------------------------EDT--SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173 (428)
Q Consensus 131 ~~~~~-----------------------------------~~~--~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i 173 (428)
...-. ... ..--.++|.++-..++.|-|..+|++||.|..|.-
T Consensus 103 ~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiT 182 (492)
T KOG1190|consen 103 HSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIIT 182 (492)
T ss_pred HHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEE
Confidence 31100 000 11235678999999999999999999999998866
Q ss_pred eecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCcee--CCeeEEEEEccCCCCC---CCCcCCcccccchhcc-------
Q 014230 174 MWDQKTGRSRGF-GFVSFRNQQDAQSAINDLTGKWL--GSRQIRCNWATKGAGN---NEDKQSSDAKSVVELT------- 240 (428)
Q Consensus 174 ~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~~~~~~~~---~~~~~~~~~~~~~~~~------- 240 (428)
+.. +.|| |+|+|.+.+.|..|...|+|+.| +.+.|++.|+...... ..++...-..+.....
T Consensus 183 F~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~ 257 (492)
T KOG1190|consen 183 FTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLD 257 (492)
T ss_pred Eec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccc
Confidence 532 2233 89999999999999999999877 4578888887543211 0101000000000000
Q ss_pred ----------------CCCCCCCcccCCCCCCCCCC--CceeEEEcCCCc-ccCHHHHHHHHhccCCeeEEEEEEeCCc-
Q 014230 241 ----------------NGSSEDGKETTNTEAPENNP--QYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDK- 300 (428)
Q Consensus 241 ----------------~~~~~~~~~~~~~~~~~~~~--~~~~l~V~nLp~-~~t~~~L~~~F~~~G~~~i~~i~i~~~~- 300 (428)
.................... ..+.|.|.||.. .+|.+.|..+|+-|| .|.+|+|+.+|
T Consensus 258 ~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYG--dVqRVkil~nkk 335 (492)
T KOG1190|consen 258 QLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYG--DVQRVKILYNKK 335 (492)
T ss_pred hhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhc--ceEEEEeeecCC
Confidence 00000000000000011111 147788888876 589999999999999 99999999875
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 301 GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 301 g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
.-|+|+|.|...|..|++.|+|. .+.||+|+|.++|..
T Consensus 336 d~ALIQmsd~~qAqLA~~hL~g~---~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 336 DNALIQMSDGQQAQLAMEHLEGH---KLYGKKLRVTLSKHT 373 (492)
T ss_pred cceeeeecchhHHHHHHHHhhcc---eecCceEEEeeccCc
Confidence 58999999999999999999999 999999999999875
No 38
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=6e-23 Score=205.72 Aligned_cols=167 Identities=18% Similarity=0.285 Sum_probs=141.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
...++|||+|||..+|+++|+++|+.||.|..+.++++. ++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345789999999999999999999999999999998864 4689999999999999999999999999999999987
Q ss_pred cccCCc-------------------------cCCCCcceeEecCCCccc----------CHHHHHHHhccCCCceEEEEe
Q 014230 130 YASGQR-------------------------EDTSGHFNIFVGDLSPEV----------TDATLFACFSVYPSCSDARVM 174 (428)
Q Consensus 130 ~~~~~~-------------------------~~~~~~~~l~v~~lp~~~----------~~~~l~~~f~~~g~v~~~~i~ 174 (428)
...... ....++.+|+|.|+.... ..++|+++|+.||.|.+|.|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 432110 011346788999996421 136799999999999999998
Q ss_pred ecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 175 WDQ---KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 175 ~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
++. .++.++|++||+|.+.++|.+|+..|||..|.|+.|.|.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 652 3356789999999999999999999999999999999998654
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=5.9e-24 Score=181.92 Aligned_cols=148 Identities=26% Similarity=0.454 Sum_probs=136.2
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
.+|||+|||..+++.+|+.+|++||.|.+|.|+++ |+||..++...++.||..|++-.+.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999955 7999999999999999999999999999999987765
Q ss_pred CCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCcc
Q 014230 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG 301 (428)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g 301 (428)
.. ..++|+|+||.+.++.++|+..|++|| .+.++.|.++
T Consensus 75 sk-------------------------------------~stkl~vgNis~tctn~ElRa~fe~yg--pviecdivkd-- 113 (346)
T KOG0109|consen 75 SK-------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYG--PVIECDIVKD-- 113 (346)
T ss_pred CC-------------------------------------CccccccCCCCccccCHHHhhhhcccC--Cceeeeeecc--
Confidence 22 126899999999999999999999999 8999999865
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 302 ~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
|+||.|+-.++|..|++.|++. +|.|++++|..+.+.
T Consensus 114 y~fvh~d~~eda~~air~l~~~---~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNT---EFQGKRMHVQLSTSR 150 (346)
T ss_pred eeEEEEeeccchHHHHhccccc---ccccceeeeeeeccc
Confidence 9999999999999999999999 999999999887654
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.9e-23 Score=175.44 Aligned_cols=214 Identities=24% Similarity=0.336 Sum_probs=159.7
Q ss_pred CceeeeecccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 014230 121 GQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (428)
Q Consensus 121 g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 200 (428)
++.|.|+.+...++.. ++++|||+.|.+.-.|||++.+|..||.|+++.+++. .+|.+|||+||.|.+..+|..||
T Consensus 2 nrpiqvkpadsesrg~---~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGG---DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCCc---cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHH
Confidence 4677777766555433 4579999999999999999999999999999999988 47899999999999999999999
Q ss_pred HHhCCce-e--CCeeEEEEEccCCCCCCCCcC---------------------------------------Ccc------
Q 014230 201 NDLTGKW-L--GSRQIRCNWATKGAGNNEDKQ---------------------------------------SSD------ 232 (428)
Q Consensus 201 ~~l~~~~-~--~g~~i~v~~~~~~~~~~~~~~---------------------------------------~~~------ 232 (428)
..|+|.. + ....|.|+|++..++.....- ...
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 9999965 3 356788999876653221100 000
Q ss_pred ------------------cccchhcc-------------------------------------------CCCCCCC----
Q 014230 233 ------------------AKSVVELT-------------------------------------------NGSSEDG---- 247 (428)
Q Consensus 233 ------------------~~~~~~~~-------------------------------------------~~~~~~~---- 247 (428)
..+..... ++.....
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 00000000 0000000
Q ss_pred ---------------------------------cccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEE
Q 014230 248 ---------------------------------KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (428)
Q Consensus 248 ---------------------------------~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i 294 (428)
............+.+|+|||..||.+..+.+|...|-+|| .|.+.
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFG--hivSa 315 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFG--HIVSA 315 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccc--ceeee
Confidence 0000001124557889999999999999999999999999 77777
Q ss_pred EEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCC
Q 014230 295 RVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343 (428)
Q Consensus 295 ~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 343 (428)
++.-| |.|+||.|+++.+|..|+..|||+ .|+-++|+|.+.+++..
T Consensus 316 KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGF---QIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 316 KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF---QIGMKRLKVQLKRPKDA 367 (371)
T ss_pred eeeehhccccccceeeEecCCchhHHHHHHHhcch---hhhhhhhhhhhcCcccc
Confidence 76654 789999999999999999999999 99999999999887643
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=8.7e-23 Score=194.83 Aligned_cols=257 Identities=21% Similarity=0.309 Sum_probs=189.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
-....+|||+|||+.++++||..+| |||.|..++.|.+|...+++..+.|+.|.|......
T Consensus 224 i~etgrlf~RNLpyt~~eed~~~lf-------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k 284 (725)
T KOG0110|consen 224 ISETGRLFVRNLPYTSTEEDLLKLF-------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEK 284 (725)
T ss_pred HHhhhhhhhccCCccccHHHHHHhh-------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcchh
Confidence 3445669999999999999999999 899999999999999999999999999997654332
Q ss_pred CCcc----------------------------------------------------------------------------
Q 014230 133 GQRE---------------------------------------------------------------------------- 136 (428)
Q Consensus 133 ~~~~---------------------------------------------------------------------------- 136 (428)
....
T Consensus 285 ~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~ 364 (725)
T KOG0110|consen 285 STAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEV 364 (725)
T ss_pred hhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhh
Confidence 1110
Q ss_pred ----------------CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 014230 137 ----------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (428)
Q Consensus 137 ----------------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 200 (428)
.....+.++|+|||..+..++|.+.|..||.|..+.+. + .|. -++|+|.+..+|.+|+
T Consensus 365 ~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Af 438 (725)
T KOG0110|consen 365 RRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAF 438 (725)
T ss_pred hhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHH
Confidence 00234679999999999999999999999999998443 1 111 2999999999999999
Q ss_pred HHhCCceeCCeeEEEEEccCCCCCCCCcCC----ccccc-------chhccCCCCCCCcc---cCCC-CCCCCCCCceeE
Q 014230 201 NDLTGKWLGSRQIRCNWATKGAGNNEDKQS----SDAKS-------VVELTNGSSEDGKE---TTNT-EAPENNPQYTTV 265 (428)
Q Consensus 201 ~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~l 265 (428)
..|....+...++.+.|+....-....... ..... .............. .... .........++|
T Consensus 439 rklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~l 518 (725)
T KOG0110|consen 439 RKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKL 518 (725)
T ss_pred HHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhh
Confidence 999999999999999887554322110000 00000 00000000000000 0000 000111222449
Q ss_pred EEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCc---------cEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 266 YVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK---------GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 266 ~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~---------g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
||.||++++|.++|..+|...| .|.++.|...+ |||||+|.+.++|..|++.|+|. .++|+.|.|+
T Consensus 519 fvkNlnf~Tt~e~l~~~F~k~G--~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt---vldGH~l~lk 593 (725)
T KOG0110|consen 519 FVKNLNFDTTLEDLEDLFSKQG--TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT---VLDGHKLELK 593 (725)
T ss_pred hhhcCCcccchhHHHHHHHhcC--eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc---eecCceEEEE
Confidence 9999999999999999999999 88888777552 99999999999999999999999 9999999999
Q ss_pred eCC
Q 014230 337 WGS 339 (428)
Q Consensus 337 ~a~ 339 (428)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 987
No 42
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.2e-22 Score=170.19 Aligned_cols=170 Identities=28% Similarity=0.472 Sum_probs=150.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCc-ccC--ceeeeec
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRH-LFG--QPIKVNW 128 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~l~v~~ 128 (428)
.-|+|||+-|...-+|||++.+|..||.|++|.+.+.. ++|||||.|.+..+|..||..|+|.. +.| ..|-|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 55789999999999999999999999999999998853 57999999999999999999999965 555 5677887
Q ss_pred ccccCCccCC----------------------------------------------------------------------
Q 014230 129 AYASGQREDT---------------------------------------------------------------------- 138 (428)
Q Consensus 129 ~~~~~~~~~~---------------------------------------------------------------------- 138 (428)
+..+.++...
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 7443221000
Q ss_pred --------------------------------------------------------------------------------
Q 014230 139 -------------------------------------------------------------------------------- 138 (428)
Q Consensus 139 -------------------------------------------------------------------------------- 138 (428)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred -------------------------CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCH
Q 014230 139 -------------------------SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (428)
Q Consensus 139 -------------------------~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~ 193 (428)
++.++|||..||.+..+.||...|-+||.|.+.+++.|+.|+.+|.|+||.|++.
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEEccCCCCC
Q 014230 194 QDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224 (428)
Q Consensus 194 ~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 224 (428)
.+|..||..+||..|+-++|+|...+++...
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999988876543
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.86 E-value=1.6e-19 Score=165.97 Aligned_cols=276 Identities=17% Similarity=0.215 Sum_probs=186.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeec--CCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
...-.|.+++||+++|++||.+||+..+ |+++++.+. +.+|-|||+|.+.+++++|++ .+...+..+.|.|--+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 3445699999999999999999999874 556666664 567999999999999999996 466777778888865533
Q ss_pred c--------CCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 014230 132 S--------GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (428)
Q Consensus 132 ~--------~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 202 (428)
. ...........|.+.+||+.|+++||.++|+..-.|.. +.++.+ ..+++.|-|||.|++.+.|+.|+..
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH
Confidence 2 22222245678999999999999999999998866655 444555 4577999999999999999999974
Q ss_pred hCCceeCCeeEEEEEccCCCCCCCC-----------cCCc--ccccchhcc-----------------------------
Q 014230 203 LTGKWLGSRQIRCNWATKGAGNNED-----------KQSS--DAKSVVELT----------------------------- 240 (428)
Q Consensus 203 l~~~~~~g~~i~v~~~~~~~~~~~~-----------~~~~--~~~~~~~~~----------------------------- 240 (428)
|...|+.|.|.|..+......... .... .........
T Consensus 165 -hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~ 243 (510)
T KOG4211|consen 165 -HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQ 243 (510)
T ss_pred -HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccc
Confidence 777888888888654321111000 0000 000000000
Q ss_pred C----CC--CC----------CCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC---cc
Q 014230 241 N----GS--SE----------DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KG 301 (428)
Q Consensus 241 ~----~~--~~----------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~---~g 301 (428)
. +. .. ...................++.++||++.++.+|.++|+..-+ .-..|.+..+ .|
T Consensus 244 d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig~dGr~TG 322 (510)
T KOG4211|consen 244 DYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEIGPDGRATG 322 (510)
T ss_pred ccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEeCCCCccCC
Confidence 0 00 00 0000000000111122267889999999999999999997742 2334455444 79
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeC
Q 014230 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (428)
Q Consensus 302 ~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (428)
-|+|+|.+.++|..|+.. ++. .+..+-|.+...
T Consensus 323 EAdveF~t~edav~Amsk-d~a---nm~hrYVElFln 355 (510)
T KOG4211|consen 323 EADVEFATGEDAVGAMGK-DGA---NMGHRYVELFLN 355 (510)
T ss_pred cceeecccchhhHhhhcc-CCc---ccCcceeeeccc
Confidence 999999999999999875 333 477777766543
No 44
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.84 E-value=2e-18 Score=152.92 Aligned_cols=262 Identities=15% Similarity=0.148 Sum_probs=197.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccC--ceeeeecccccCCc-
Q 014230 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAYASGQR- 135 (428)
Q Consensus 59 l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~~~~~- 135 (428)
+-|-|--+.+|-+.|+.++.+.|.|.+|.|++. +--.|.|+|++.+.|++|...|||..|.. .+|+|+|+++..-.
T Consensus 125 ~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV 203 (494)
T KOG1456|consen 125 FTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNV 203 (494)
T ss_pred EEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeee
Confidence 445555678999999999999999999988877 43579999999999999999999988753 68999988653110
Q ss_pred ------------------------------------------------------------------------------cC
Q 014230 136 ------------------------------------------------------------------------------ED 137 (428)
Q Consensus 136 ------------------------------------------------------------------------------~~ 137 (428)
..
T Consensus 204 ~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g 283 (494)
T KOG1456|consen 204 QKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGG 283 (494)
T ss_pred eecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCC
Confidence 00
Q ss_pred CCCcceeEecCCCcc-cCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 138 TSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
..+...++|.+|... ++-+.|..+|-.||.|++|++++.+ .|.|.|++.+..+.++|+..||+..+.|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 023467899999875 6778999999999999999999663 3469999999999999999999999999999999
Q ss_pred EccCCCCCCCCc--CCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEE
Q 014230 217 WATKGAGNNEDK--QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (428)
Q Consensus 217 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i 294 (428)
+++-........ ......+...+.......-............++.++|+.-|.|..+||+.|.++|...+ +...++
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~-v~~~sv 437 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKD-VPPTSV 437 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcC-CCcceE
Confidence 886654332211 11111111222211111112222223344567789999999999999999999999886 457777
Q ss_pred EEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccC
Q 014230 295 RVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (428)
Q Consensus 295 ~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 330 (428)
++... ...+.++|++.++|..|+..+|.. .+.+
T Consensus 438 kvFp~kserSssGllEfe~~s~Aveal~~~NH~---pi~~ 474 (494)
T KOG1456|consen 438 KVFPLKSERSSSGLLEFENKSDAVEALMKLNHY---PIEG 474 (494)
T ss_pred EeecccccccccceeeeehHHHHHHHHHHhccc---cccC
Confidence 77765 357999999999999999999998 5654
No 45
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.84 E-value=3.4e-18 Score=151.48 Aligned_cols=279 Identities=18% Similarity=0.192 Sum_probs=204.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHh--CCCcccCceeeeecc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL--NGRHLFGQPIKVNWA 129 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~~ 129 (428)
.++++..|.|++|-..++|.||.+.++.||+|.-+.++..++ .|.|+|+|.+.|+.++... +...+.|..--++++
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r--~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR--QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc--eeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 456677899999999999999999999999998877777654 6999999999999988532 334467777777777
Q ss_pred cccC----CccCCCCcceeEecCCC--cccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 014230 130 YASG----QREDTSGHFNIFVGDLS--PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (428)
Q Consensus 130 ~~~~----~~~~~~~~~~l~v~~lp--~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 203 (428)
.... ..+...++..|.+.-|. +.+|.+-|..++...|.|.+|.|++. ++ --|.|||++.+.|.+|...|
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhc
Confidence 4322 12233444455544444 56899999999999999999988854 22 24999999999999999999
Q ss_pred CCcee--CCeeEEEEEccCCCCCCCCcCCcccc----------------------------cchhccCCC----C----C
Q 014230 204 TGKWL--GSRQIRCNWATKGAGNNEDKQSSDAK----------------------------SVVELTNGS----S----E 245 (428)
Q Consensus 204 ~~~~~--~g~~i~v~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~----~----~ 245 (428)
||..| +-++|+|+|+++....-.......+. .......+. + .
T Consensus 180 NGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~ 259 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHG 259 (494)
T ss_pred ccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCC
Confidence 99876 67899999997754221100000000 000000000 0 0
Q ss_pred CC-----------cccCCCCCCCCCCCceeEEEcCCCcc-cCHHHHHHHHhccCCeeEEEEEEeCC-ccEEEEEeCCHHH
Q 014230 246 DG-----------KETTNTEAPENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAE 312 (428)
Q Consensus 246 ~~-----------~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~~~i~~i~i~~~-~g~afV~f~~~~~ 312 (428)
.. ........+....+++.+.|.+|... ++-+.|..+|..|| .|..|++++. .|-|.|++.|..+
T Consensus 260 p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYG--NV~rvkFmkTk~gtamVemgd~~a 337 (494)
T KOG1456|consen 260 PPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYG--NVERVKFMKTKPGTAMVEMGDAYA 337 (494)
T ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcC--ceeeEEEeecccceeEEEcCcHHH
Confidence 00 00001112244456789999999875 68888999999999 9999999997 5899999999999
Q ss_pred HHHHHHHhcCCCcccccCeeEEEeeCCCCC
Q 014230 313 AALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342 (428)
Q Consensus 313 A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 342 (428)
.++|+..||+. .+.|.+|.|.+++...
T Consensus 338 ver~v~hLnn~---~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 338 VERAVTHLNNI---PLFGGKLNVCVSKQNF 364 (494)
T ss_pred HHHHHHHhccC---ccccceEEEeeccccc
Confidence 99999999999 8999999999988653
No 46
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=1.8e-19 Score=150.47 Aligned_cols=191 Identities=18% Similarity=0.252 Sum_probs=147.3
Q ss_pred CcceeEecCCCcccCHHHHHH----HhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 140 GHFNIFVGDLSPEVTDATLFA----CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~----~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
++.+|||.||+..+..++|++ +|+.||.|.+|... ++.+.+|-|||.|.+.+.|..|++.|+|..+.|+++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 99999999999988 56799999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCcCCcc--------cccch-----hccCCCCC---CCcccCCCCCCCCCCCceeEEEcCCCcccCHHHH
Q 014230 216 NWATKGAGNNEDKQSSD--------AKSVV-----ELTNGSSE---DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279 (428)
Q Consensus 216 ~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 279 (428)
.|+..+.-........- ..... ...++... ........ .....++..+||+.|||.+++.+.|
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHHH
Confidence 99876543222210000 00000 00000000 00000001 1334677789999999999999999
Q ss_pred HHHHhccCCeeEEEEEEeCC-ccEEEEEeCCHHHHHHHHHHhcCCCccccc-CeeEEEeeCC
Q 014230 280 HRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGS 339 (428)
Q Consensus 280 ~~~F~~~G~~~i~~i~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v~~a~ 339 (428)
..+|+.|. -...|++... ++.|||+|.+...|..|...+.+. .|- ...++|.|++
T Consensus 164 ~~lf~qf~--g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~---~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFP--GFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGF---KITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCc--ccceeEeccCCCceeEEecchhhhhHHHhhhhccc---eeccCceEEecccC
Confidence 99999998 7889999886 789999999999999999999998 666 8889888875
No 47
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=5.6e-20 Score=173.70 Aligned_cols=266 Identities=21% Similarity=0.322 Sum_probs=200.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc-----------C-CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccC
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSST-----------G-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-----------G-~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (428)
...+.++|+++|..++++....+|..- | .+..+.+-..+ ++||++|.+.++|..|+ .+++..+.|
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~--nfa~ie~~s~~~at~~~-~~~~~~f~g 249 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK--NFAFIEFRSISEATEAM-ALDGIIFEG 249 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc--cceeEEecCCCchhhhh-cccchhhCC
Confidence 344679999999999999999998753 3 35566554444 59999999999999997 578888888
Q ss_pred ceeeeecccccC--------------------CccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCC
Q 014230 122 QPIKVNWAYASG--------------------QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR 181 (428)
Q Consensus 122 ~~l~v~~~~~~~--------------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~ 181 (428)
..+++....... ..........+||++||...+++.++++...||.+....++.|..+|.
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 888775432211 112223457899999999999999999999999999999999998899
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCC
Q 014230 182 SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQ 261 (428)
Q Consensus 182 ~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (428)
++||||.+|.+......|+..|||..++++.|.|..+................... ............+
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~-----------~i~~~~~q~~g~~ 398 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVP-----------GIPLLMTQMAGIP 398 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccc-----------cchhhhcccCCCc
Confidence 99999999999999999999999999999999999887654432222110000000 0000011223333
Q ss_pred ceeEEEcCCC--ccc-CH-------HHHHHHHhccCCeeEEEEEEeCC---------ccEEEEEeCCHHHHHHHHHHhcC
Q 014230 262 YTTVYVGNLA--PEV-TQ-------LDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAALAIQMGNT 322 (428)
Q Consensus 262 ~~~l~V~nLp--~~~-t~-------~~L~~~F~~~G~~~i~~i~i~~~---------~g~afV~f~~~~~A~~A~~~l~g 322 (428)
...|.+.|+- .++ .+ |+++.-+++|| .|..|.+.++ .|..||+|.+.+++.+|+++|+|
T Consensus 399 t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g--~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~G 476 (500)
T KOG0120|consen 399 TEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG--AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTG 476 (500)
T ss_pred chhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC--ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccC
Confidence 4455555552 122 11 45666788999 9999999876 58999999999999999999999
Q ss_pred CCcccccCeeEEEeeC
Q 014230 323 TQSSYLFGKQMKCSWG 338 (428)
Q Consensus 323 ~~~~~~~g~~l~v~~a 338 (428)
. .|.||.|..+|-
T Consensus 477 r---KF~nRtVvtsYy 489 (500)
T KOG0120|consen 477 R---KFANRTVVASYY 489 (500)
T ss_pred c---eeCCcEEEEEec
Confidence 9 999999999873
No 48
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=1.3e-20 Score=175.43 Aligned_cols=182 Identities=25% Similarity=0.365 Sum_probs=150.0
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
+.+.+++|+.-|+...++.+|.++|+.+|.|.+|.++.|+.+++++|.+||+|.+.+....||. |.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 4566899999999999999999999999999999999999999999999999999999999995 999999999999987
Q ss_pred ccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEe
Q 014230 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (428)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~ 297 (428)
....+... ..... .-.......+...|||+||++++++++|+.+|++|| .|..|.+.
T Consensus 255 sEaeknr~--a~~s~-------------------a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg--~Ie~v~l~ 311 (549)
T KOG0147|consen 255 SEAEKNRA--ANASP-------------------ALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFG--KIENVQLT 311 (549)
T ss_pred cHHHHHHH--Hhccc-------------------cccccccccchhhhhhcccccCchHHHHhhhccCcc--cceeeeec
Confidence 65432210 00000 000011122234499999999999999999999999 88888877
Q ss_pred CC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCCCCC
Q 014230 298 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGT 346 (428)
Q Consensus 298 ~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~~ 346 (428)
++ +||+||+|.+.++|.+|+..|||. +|.|+.|+|...........
T Consensus 312 ~d~~tG~skgfGfi~f~~~~~ar~a~e~lngf---elAGr~ikV~~v~~r~~~~~ 363 (549)
T KOG0147|consen 312 KDSETGRSKGFGFITFVNKEDARKALEQLNGF---ELAGRLIKVSVVTERVDTKE 363 (549)
T ss_pred cccccccccCcceEEEecHHHHHHHHHHhccc---eecCceEEEEEeeeeccccc
Confidence 66 899999999999999999999998 99999999998776655443
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.3e-18 Score=139.58 Aligned_cols=169 Identities=22% Similarity=0.355 Sum_probs=131.7
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
..++|||+|||.++.+.+|.++|.+||.|..|.+... ...-.||||+|++..+|+.||..-+|..++|..|+|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4579999999999999999999999999999987632 2456799999999999999999999999999999999987
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~ 299 (428)
...........-. ..............+........|.|.+||++-+|+||+++..+-| .++...+.++
T Consensus 82 ggr~s~~~~G~y~---------gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG--dvCfadv~rD 150 (241)
T KOG0105|consen 82 GGRSSSDRRGSYS---------GGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG--DVCFADVQRD 150 (241)
T ss_pred CCCcccccccccC---------CCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC--Ceeeeeeecc
Confidence 7542221111000 0000011111111222333346899999999999999999999999 8999988887
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 300 KGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 300 ~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
|.+.|+|...++...|+..|...
T Consensus 151 -g~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 151 -GVGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred -cceeeeeeehhhHHHHHHhhccc
Confidence 79999999999999999999887
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.4e-19 Score=143.69 Aligned_cols=147 Identities=21% Similarity=0.367 Sum_probs=128.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC-CceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccC
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~-~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (428)
..++|||+|||.++.+.||.++|-+||.|..|.+..... ..||||+|+++.+|+.||..-+|..+.|..|+|+++..-.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 457799999999999999999999999999998866543 5799999999999999999999999999999999985432
Q ss_pred Cc-----------------------cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEe
Q 014230 134 QR-----------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190 (428)
Q Consensus 134 ~~-----------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f 190 (428)
.. ........|.|++||++.+|+||++.+.+-|.|--..+.+| |++.|+|
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~ 157 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEY 157 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeee
Confidence 11 11234578999999999999999999999999988888766 3699999
Q ss_pred CCHHHHHHHHHHhCCcee
Q 014230 191 RNQQDAQSAINDLTGKWL 208 (428)
Q Consensus 191 ~~~~~a~~a~~~l~~~~~ 208 (428)
...|+.+-|+..|+...+
T Consensus 158 ~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eehhhHHHHHHhhccccc
Confidence 999999999999988765
No 51
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.81 E-value=1e-19 Score=164.20 Aligned_cols=169 Identities=22% Similarity=0.418 Sum_probs=149.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
..++|+|++|+++++++.|+..|..||.|.++.+++++ ++||+||+|.+++...+++. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56789999999999999999999999999999999976 35899999999999888874 45677999999999887
Q ss_pred ccCCccCC---CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014230 131 ASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (428)
Q Consensus 131 ~~~~~~~~---~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 207 (428)
+....... ....++||++||.+++++++++.|+.||.|.++.++.|..+.+++||+||.|.+++++++++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 76543322 246799999999999999999999999999999999999999999999999999999999886 68889
Q ss_pred eCCeeEEEEEccCCCCCC
Q 014230 208 LGSRQIRCNWATKGAGNN 225 (428)
Q Consensus 208 ~~g~~i~v~~~~~~~~~~ 225 (428)
|.++.+.|..+.++....
T Consensus 163 ~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecCceeeEeeccchhhcc
Confidence 999999999998876544
No 52
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.81 E-value=1.1e-19 Score=164.07 Aligned_cols=167 Identities=27% Similarity=0.465 Sum_probs=142.2
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
..++|||++|+++++++.|++.|..||+|.++.+++|+.+++++||+||+|.+.+...+++. ...+.++|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 45799999999999999999999999999999999999999999999999999999999886 46678999999998877
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~ 299 (428)
++........ .....+|||++||.++++++++++|++|| .|.++.++.|
T Consensus 84 ~r~~~~~~~~-----------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g--~v~~~~~~~d 132 (311)
T KOG4205|consen 84 SREDQTKVGR-----------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFG--KVADVVIMYD 132 (311)
T ss_pred Cccccccccc-----------------------------ccceeEEEecCcCCCCchHHHhhhhhccc--eeEeeEEeec
Confidence 6554322211 11347899999999999999999999999 8888888765
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCC
Q 014230 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342 (428)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 342 (428)
+||+||+|.+.+...+++. ..-+ .|+++.+.|..+-++.
T Consensus 133 ~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~---~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 133 KTTSRPRGFGFVTFDSEDSVDKVTL-QKFH---DFNGKKVEVKRAIPKE 177 (311)
T ss_pred ccccccccceeeEeccccccceecc-ccee---eecCceeeEeeccchh
Confidence 7999999999988888875 3444 7999999999876553
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=2.9e-18 Score=143.30 Aligned_cols=160 Identities=18% Similarity=0.396 Sum_probs=138.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HHhccCCceeEEEeec-CCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQE----VFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~----~f~~~G~v~~i~~~~~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
++.||||.||+..+..++|+. +|+.||.|.+|..++. +.+|.|||.|.+.+.|..|+..|+|..|.|++++|.|+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 445899999999999999888 9999999999999875 46899999999999999999999999999999999999
Q ss_pred cccCCc-----------------------------------------------cCCCCcceeEecCCCcccCHHHHHHHh
Q 014230 130 YASGQR-----------------------------------------------EDTSGHFNIFVGDLSPEVTDATLFACF 162 (428)
Q Consensus 130 ~~~~~~-----------------------------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f 162 (428)
+.++.. ...+++..+|+.|||..++.+.+..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 654321 113556789999999999999999999
Q ss_pred ccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEEcc
Q 014230 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWAT 219 (428)
Q Consensus 163 ~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 219 (428)
+.|.....++++.. .++.|||+|.+...+..|...+.+..+. ...+.+.+++
T Consensus 168 ~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999998854 2457999999999999999999998875 7788887764
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.75 E-value=2.8e-17 Score=135.85 Aligned_cols=184 Identities=16% Similarity=0.264 Sum_probs=128.1
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC---CeeEEE
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD-QKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG---SRQIRC 215 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~v 215 (428)
.-++|||++||.++...+|..+|+.|-..+...+... +.....+-++||.|.+..+|..|+..|||..|+ +.+|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999999977777666533 222345679999999999999999999999984 889999
Q ss_pred EEccCCCCCCCCcCCcccccchhc---------------------cCCC--CCC-C---------------------ccc
Q 014230 216 NWATKGAGNNEDKQSSDAKSVVEL---------------------TNGS--SED-G---------------------KET 250 (428)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~--~~~-~---------------------~~~ 250 (428)
++++........+....+.+.... .... .+. . .+.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 998765433322221110000000 0000 000 0 000
Q ss_pred C------CCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 251 T------NTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 251 ~------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
. ..........+.||||.||..++||++|+.+|+.|....|..|+-......||++|++.+.|..|+..|.|.
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 0 000112223457999999999999999999999997445555554444568999999999999999999997
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=3.5e-17 Score=133.44 Aligned_cols=85 Identities=40% Similarity=0.617 Sum_probs=79.7
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
...++|||+|||+++++++|+++|++||.|.++.++.|+.+++++|||||+|.+.++|++|++.|++..+.|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 014230 219 TKGAG 223 (428)
Q Consensus 219 ~~~~~ 223 (428)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.72 E-value=1.9e-16 Score=131.06 Aligned_cols=153 Identities=22% Similarity=0.366 Sum_probs=122.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC-C----CceEEEEEccHHHHHHHHHHhCCCccc---Cce
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-K----SSYGFIHYFDRRSAAMAILSLNGRHLF---GQP 123 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~-~----~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~ 123 (428)
.+...|||||.+||.++...||+.+|..|--.+...+.... . +.+|||.|.+..+|..|+..|||..|. +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 46678999999999999999999999998776665554432 2 259999999999999999999999985 678
Q ss_pred eeeecccccCCccCC-----------------------------------------------------------------
Q 014230 124 IKVNWAYASGQREDT----------------------------------------------------------------- 138 (428)
Q Consensus 124 l~v~~~~~~~~~~~~----------------------------------------------------------------- 138 (428)
|+|++++...+....
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 899887553221100
Q ss_pred ------------------CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 014230 139 ------------------SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (428)
Q Consensus 139 ------------------~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 200 (428)
..+.+|||.||..+++|++|+.+|+.|.....++|.- ......+|++|++.+.|..|+
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHH
Confidence 2346899999999999999999999997776666642 123346999999999999999
Q ss_pred HHhCCcee
Q 014230 201 NDLTGKWL 208 (428)
Q Consensus 201 ~~l~~~~~ 208 (428)
..|.|..+
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99998765
No 57
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.71 E-value=3.7e-16 Score=141.31 Aligned_cols=195 Identities=18% Similarity=0.258 Sum_probs=142.0
Q ss_pred CcceeEecCCCcccCHHHHHHHhcc-CCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
..+.+||.|||+++.|.+|+++|+. .|+|+.|.++.| .++++|||+.|+|+++|.+++|++.|+...+.||+|.|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3456999999999999999999964 799999999999 68999999999999999999999999999999999999765
Q ss_pred cCCCCCCCCcCCcc--------------cc---------------cchhccCCCCCC-C--------------------c
Q 014230 219 TKGAGNNEDKQSSD--------------AK---------------SVVELTNGSSED-G--------------------K 248 (428)
Q Consensus 219 ~~~~~~~~~~~~~~--------------~~---------------~~~~~~~~~~~~-~--------------------~ 248 (428)
.............+ .. ......+..+.. . .
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 44221110000000 00 000000000000 0 0
Q ss_pred ccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 249 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
...........|....+||.||.+.+..+.|++.|.-.| .++.|.+.-+ +|++.|+|.++-+|..|+..+++.
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG--kv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG--KVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccce--eeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 000000011334457899999999999999999999998 6777665533 799999999999999999999987
Q ss_pred CcccccCeeEEEeeCCC
Q 014230 324 QSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 324 ~~~~~~g~~l~v~~a~~ 340 (428)
-+.+++..+++.+-
T Consensus 280 ---g~~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 280 ---GLFDRRMTVRLDRI 293 (608)
T ss_pred ---CCccccceeecccc
Confidence 78888888887553
No 58
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1e-16 Score=135.72 Aligned_cols=165 Identities=24% Similarity=0.388 Sum_probs=130.7
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
..+||++||+.+.+.+|..+|..||.+.++.+. .||+||+|.+..+|..|+..+++..+.|-.+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999998875 258999999999999999999999999888999988754
Q ss_pred CCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCcc
Q 014230 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG 301 (428)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g 301 (428)
.......... ................+.|+|.++...+.+.+|++.|+++| .+..... .++
T Consensus 74 ~~~~g~~~~g---------------~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g--~~~~~~~--~~~ 134 (216)
T KOG0106|consen 74 RRGRGRPRGG---------------DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG--EVTYVDA--RRN 134 (216)
T ss_pred ccccCCCCCC---------------CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC--CCchhhh--hcc
Confidence 3222000000 00000111112223347899999999999999999999999 6655444 568
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 302 ~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
++||+|.+.++|.+|+..+++. .+.+++|++.
T Consensus 135 ~~~v~Fs~~~da~ra~~~l~~~---~~~~~~l~~~ 166 (216)
T KOG0106|consen 135 FAFVEFSEQEDAKRALEKLDGK---KLNGRRISVE 166 (216)
T ss_pred ccceeehhhhhhhhcchhccch---hhcCceeeec
Confidence 9999999999999999999999 9999999994
No 59
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.67 E-value=3.5e-16 Score=139.26 Aligned_cols=273 Identities=15% Similarity=0.106 Sum_probs=179.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC----CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTG----PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G----~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
.....|..++||+..++.+|..+|...- -+.-|.....+..|++.|.|.|.+.-+.|++. +...+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 3445688999999999999999998432 22222222334568999999999998889864 566677788888655
Q ss_pred cccCC-------------ccCCCCcceeEecCCCcccCHHHHHHHhccC----CCceEEEEeecCCCCCcccEEEEEeCC
Q 014230 130 YASGQ-------------REDTSGHFNIFVGDLSPEVTDATLFACFSVY----PSCSDARVMWDQKTGRSRGFGFVSFRN 192 (428)
Q Consensus 130 ~~~~~-------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~----g~v~~~~i~~~~~~~~~~g~afV~f~~ 192 (428)
....- .......-.|.+++||.++++.++.++|..- |..+.|.++.. .+|+..|-|||.|..
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFAC 215 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecC
Confidence 33211 1111234567889999999999999999743 34455555543 478999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCc
Q 014230 193 QQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAP 272 (428)
Q Consensus 193 ~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~ 272 (428)
+++|..|+.. |...++.|.|.+..++.............. ...... .+...... ............+|.+++||+
T Consensus 216 ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~-pLi~~~--~sp~~p~~-p~~~~p~~~~kdcvRLRGLPy 290 (508)
T KOG1365|consen 216 EEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSE-PLIPGL--TSPLLPGG-PARLVPPTRSKDCVRLRGLPY 290 (508)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccc-cccCCC--CCCCCCCC-ccccCCCCCCCCeeEecCCCh
Confidence 9999999974 666677777776544332110000000000 000000 00000000 111111222357899999999
Q ss_pred ccCHHHHHHHHhccCCeeEEE--EEEeC-----CccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 273 EVTQLDLHRHFHSLGAGVIEE--VRVQR-----DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 273 ~~t~~~L~~~F~~~G~~~i~~--i~i~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
..+.|||.++|..|- ..|.. |.+.- ..|-|||+|.+.++|..|....|++ ....|-|.|--
T Consensus 291 ~AtvEdIL~FlgdFa-~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~---~mk~RYiEvfp 358 (508)
T KOG1365|consen 291 EATVEDILDFLGDFA-TDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKK---LMKSRYIEVFP 358 (508)
T ss_pred hhhHHHHHHHHHHHh-hhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHh---hcccceEEEee
Confidence 999999999999885 23333 44432 3789999999999999999998888 56678787743
No 60
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.66 E-value=1.7e-15 Score=139.64 Aligned_cols=164 Identities=17% Similarity=0.278 Sum_probs=124.2
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
....|.+.+||+++|++||.++|+.+ .|+++.+.+ .+|+..|-|||+|.+++++++|++ .+...+..|.|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 34678899999999999999999997 677755554 579999999999999999999998 58888999999997665
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEE-EEEeC
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-VRVQR 298 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~-i~i~~ 298 (428)
.......-+... +........|.+++||+.||++||.++|+..- .+.+ |.+..
T Consensus 85 ~~e~d~~~~~~g------------------------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~--Iv~~gi~l~~ 138 (510)
T KOG4211|consen 85 GAEADWVMRPGG------------------------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLE--IVPDGILLPM 138 (510)
T ss_pred CccccccccCCC------------------------CCCCCCCceEEecCCCccCcHHHHHHHhcCCc--ccccceeeec
Confidence 543321111000 00001225799999999999999999999873 2222 33332
Q ss_pred -----CccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 299 -----DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 299 -----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
..|-|||+|++.+.|+.|+..-.. .|+.|-|.|--
T Consensus 139 d~rgR~tGEAfVqF~sqe~ae~Al~rhre----~iGhRYIEvF~ 178 (510)
T KOG4211|consen 139 DQRGRPTGEAFVQFESQESAEIALGRHRE----NIGHRYIEVFR 178 (510)
T ss_pred cCCCCcccceEEEecCHHHHHHHHHHHHH----hhccceEEeeh
Confidence 268999999999999999987554 58888888754
No 61
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.66 E-value=2.4e-15 Score=132.64 Aligned_cols=193 Identities=19% Similarity=0.241 Sum_probs=137.9
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 210 (428)
.-+..|||+|||.++|.+++.++|+++|.|.+ |++.++ +.|+.+|=|++.|-..+++..|+..|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34567999999999999999999999997743 778888 569999999999999999999999999999999
Q ss_pred eeEEEEEccCCCCCCCC--cCCc-ccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCC--c--ccC-------H
Q 014230 211 RQIRCNWATKGAGNNED--KQSS-DAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLA--P--EVT-------Q 276 (428)
Q Consensus 211 ~~i~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp--~--~~t-------~ 276 (428)
+.|+|+.+.-....... .... ...............-.-.+....+......++|.+.||= . ..+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999987543221111 1000 0000000000000000001111222233344789999882 2 122 4
Q ss_pred HHHHHHHhccCCeeEEEEEEe--CCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 277 LDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 277 ~~L~~~F~~~G~~~i~~i~i~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
++|++-+++|| .|..|.+. ...|.+-|.|.+.++|..|++.|+|+ +|+||.|.-+.
T Consensus 291 edl~eec~K~G--~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR---~fdgRql~A~i 348 (382)
T KOG1548|consen 291 EDLTEECEKFG--QVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR---WFDGRQLTASI 348 (382)
T ss_pred HHHHHHHHHhC--CcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe---eecceEEEEEE
Confidence 67788899999 88888887 34799999999999999999999999 99999998765
No 62
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=1.3e-15 Score=124.14 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=70.4
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
..++|||+|||+++|+++|+++|++|| .|.++.+..+ +|||||+|.+.++|..|++.||+. .|+|++|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~---~i~Gr~l~ 107 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFG--DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK---ELNGRHIR 107 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC---EECCEEEE
Confidence 347899999999999999999999999 8999988754 799999999999999999999999 99999999
Q ss_pred EeeCCCC
Q 014230 335 CSWGSKP 341 (428)
Q Consensus 335 v~~a~~~ 341 (428)
|+|++.+
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 9998754
No 63
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.63 E-value=1.4e-14 Score=127.88 Aligned_cols=166 Identities=23% Similarity=0.364 Sum_probs=134.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCcee--------EEEeecCC---CceEEEEEccHHHHHHHHHHhCCCccc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLF 120 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------i~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (428)
.+..+..|||.|||.++|.+++.++|+++|.|.+ |++.++.. +|-|++.|-..+++..|+..|++..|.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3566677999999999999999999999997754 67776643 588999999999999999999999999
Q ss_pred CceeeeecccccCC-----------------------------------ccCCCCcceeEecCCCc----ccC-------
Q 014230 121 GQPIKVNWAYASGQ-----------------------------------REDTSGHFNIFVGDLSP----EVT------- 154 (428)
Q Consensus 121 g~~l~v~~~~~~~~-----------------------------------~~~~~~~~~l~v~~lp~----~~~------- 154 (428)
|+.|+|+.+.-... .......++|.+.|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999987732100 01113457888888721 122
Q ss_pred HHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 155 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
.++|++-+++||.|.+|.|. + ..+.|.+-|.|.+.++|..||+.|+|+.|+||.|..+....+
T Consensus 290 kedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 35777889999999999876 2 477899999999999999999999999999999999876654
No 64
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=5.2e-16 Score=131.44 Aligned_cols=149 Identities=28% Similarity=0.457 Sum_probs=128.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc----
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS---- 132 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~---- 132 (428)
..|||++||+.+.+.+|..+|..||.+..+.+.. ||+||+|.+..+|..|+..+|+..|.|..+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR 77 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecceeeeeeccccccccc
Confidence 3599999999999999999999999999887744 68999999999999999999999999988999888742
Q ss_pred --CCc-----------cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 014230 133 --GQR-----------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199 (428)
Q Consensus 133 --~~~-----------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a 199 (428)
... ......+.+.|.+++..+.+.+|.+.|..+|.+....+ ..+++||+|.+.+++.+|
T Consensus 78 g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 78 GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhc
Confidence 110 11234678899999999999999999999999944433 345799999999999999
Q ss_pred HHHhCCceeCCeeEEEEE
Q 014230 200 INDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 200 ~~~l~~~~~~g~~i~v~~ 217 (428)
+..|++..+.++.|.+..
T Consensus 150 ~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISVEK 167 (216)
T ss_pred chhccchhhcCceeeecc
Confidence 999999999999999943
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.3e-15 Score=126.62 Aligned_cols=83 Identities=28% Similarity=0.483 Sum_probs=80.0
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
.+..+|.|.||+.+++|++|.++|.+||.|.++.+.+|++||.+||||||.|.+.++|.+||+.|||.-+++-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 014230 219 TKG 221 (428)
Q Consensus 219 ~~~ 221 (428)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=1.2e-14 Score=104.18 Aligned_cols=70 Identities=37% Similarity=0.769 Sum_probs=67.2
Q ss_pred eEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 144 l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
|||+|||.++++++|+++|+.||.|..+.+..+ .++..+|+|||+|.+.++|++|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6789999999999999999999999999999999986
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=6.6e-15 Score=128.89 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
...-++|+|+|||....|.||+.+|++||+|.+|.|+.+. ++||+||+|++++||++|..+|||..+.||+|.|+.+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3444679999999999999999999999999999998864 68999999999999999999999999999999999886
Q ss_pred cc
Q 014230 131 AS 132 (428)
Q Consensus 131 ~~ 132 (428)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 55
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=2.8e-14 Score=125.04 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=71.5
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
...++|+|+|||+...|.||+.+|++|| .|.+|.|+.+ |||+||+|++.+||.+|.++|||. .+.||+|.|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG--~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt---~VEGRkIEV 168 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFG--KVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGT---VVEGRKIEV 168 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhC--ceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcc---eeeceEEEE
Confidence 3447899999999999999999999999 9999999865 899999999999999999999999 999999999
Q ss_pred eeCCCC
Q 014230 336 SWGSKP 341 (428)
Q Consensus 336 ~~a~~~ 341 (428)
..+..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 987654
No 69
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.3e-13 Score=129.53 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=111.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 51 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
....+.++|+|-|||..+++++|+.+|+.||+|++|+....+ +|.+||+|.|..+|+.|++.|++..+.|+.|+.....
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~ 148 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGA 148 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcc
Confidence 345667899999999999999999999999999997775554 4899999999999999999999999999998832221
Q ss_pred ccCC-------------------ccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeC
Q 014230 131 ASGQ-------------------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191 (428)
Q Consensus 131 ~~~~-------------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~ 191 (428)
.... ....-....+++ .|++..+...++..+.-+|.+.. +. ++.-+---|++|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~~~ 221 (549)
T KOG4660|consen 149 RRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVEFA 221 (549)
T ss_pred cccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhhhc
Confidence 1100 000011223333 38887777555566666676654 22 2211224678888
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 192 NQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 192 ~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
+..++..+.... |..+.+.....+++..
T Consensus 222 ~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 222 DNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cccchhhcccCC-ceecCCCCceEEecCC
Confidence 888886555533 6666666666666654
No 70
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.3e-14 Score=121.83 Aligned_cols=81 Identities=36% Similarity=0.587 Sum_probs=74.0
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
..-++|||++|++.+..++|++.|++||+|++..|+.|+.++++|||+||+|.+.++|.+|++. .+-.|+||+..|.++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3446899999999999999999999999999999999999999999999999999999999974 445689999999887
Q ss_pred cC
Q 014230 219 TK 220 (428)
Q Consensus 219 ~~ 220 (428)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 65
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.3e-14 Score=108.28 Aligned_cols=81 Identities=26% Similarity=0.458 Sum_probs=76.6
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
.+++|||+||+..++|+.|.++|+.+|+|..|.+-.|+.+..+.|||||+|.+.++|+.|++.+++..++.++|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred C
Q 014230 220 K 220 (428)
Q Consensus 220 ~ 220 (428)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 72
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.3e-15 Score=120.73 Aligned_cols=87 Identities=28% Similarity=0.535 Sum_probs=79.8
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
..-.++.-|||+|||.+.||.||.-+|+.||.|.+|.+++|+.||+++||||+.|++..+...|+..|||..|.||.|+|
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 014230 216 NWATKGA 222 (428)
Q Consensus 216 ~~~~~~~ 222 (428)
.......
T Consensus 110 DHv~~Yk 116 (219)
T KOG0126|consen 110 DHVSNYK 116 (219)
T ss_pred eeccccc
Confidence 8654433
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=6.8e-14 Score=121.13 Aligned_cols=94 Identities=21% Similarity=0.403 Sum_probs=83.9
Q ss_pred cccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014230 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (428)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 207 (428)
|...........+-+||||+-|+.+++|.+|+..|+.||.|+.|.|++|+.||+++|||||+|.++.+...|.+..+|..
T Consensus 88 wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 88 WDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred cCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 33333344445778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEEEEccCC
Q 014230 208 LGSRQIRCNWATKG 221 (428)
Q Consensus 208 ~~g~~i~v~~~~~~ 221 (428)
|+|+.|.|.+....
T Consensus 168 Idgrri~VDvERgR 181 (335)
T KOG0113|consen 168 IDGRRILVDVERGR 181 (335)
T ss_pred ecCcEEEEEecccc
Confidence 99999999876543
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=2.7e-13 Score=118.17 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=69.6
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC---ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
++|||+|||+++|+++|+++|+.|| .|.+|+|.++ +|||||+|.+.++|..|+. |+|. .|.|+.|+|.++.
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G--~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~---~l~gr~V~Vt~a~ 78 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSG--DIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGA---TIVDQSVTITPAE 78 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCC---eeCCceEEEEecc
Confidence 6899999999999999999999999 9999999876 6999999999999999995 9999 9999999999987
Q ss_pred CCCC
Q 014230 340 KPTP 343 (428)
Q Consensus 340 ~~~~ 343 (428)
+...
T Consensus 79 ~~~~ 82 (260)
T PLN03120 79 DYQL 82 (260)
T ss_pred CCCC
Confidence 5443
No 75
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=5.2e-14 Score=100.75 Aligned_cols=65 Identities=35% Similarity=0.717 Sum_probs=61.3
Q ss_pred EEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 265 l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
|||+|||.++|+++|+++|+.|| .+..+.+..+ +++|||+|.+.++|.+|++.|+|. .++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~---~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFG--KIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGK---KINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTS--TEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTE---EETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhh--hcccccccccccccccceEEEEEcCHHHHHHHHHHcCCC---EECccCcC
Confidence 79999999999999999999999 8888888874 799999999999999999999999 99999986
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.2e-13 Score=98.78 Aligned_cols=70 Identities=33% Similarity=0.671 Sum_probs=64.7
Q ss_pred eEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 144 l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999866 89999999999999999999999999999999885
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=8.1e-14 Score=111.43 Aligned_cols=79 Identities=28% Similarity=0.510 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCC
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (428)
..++|||+||+..+++.||...|..||+|.+|.|-.. ..|||||+|+++.||+.|+..|+|..|.|..|.|+++.....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 3577999999999999999999999999999999774 458999999999999999999999999999999999876554
No 78
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.7e-13 Score=119.45 Aligned_cols=76 Identities=26% Similarity=0.425 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC-CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..++ ++|||||+|.+.++|+.|+. |+|..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 4789999999999999999999999999999999886 46999999999999999995 9999999999999987654
No 79
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=3e-13 Score=98.27 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=75.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC-CceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 50 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~-~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
..++...+.|||+|||.++|.|+..++|.+||.|..|++-..+. +|.|||.|++..+|.+|++.|+|..+.++.+.|.+
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 33466778899999999999999999999999999999988764 59999999999999999999999999999999987
Q ss_pred cccc
Q 014230 129 AYAS 132 (428)
Q Consensus 129 ~~~~ 132 (428)
..+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 6543
No 80
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=5.4e-13 Score=123.42 Aligned_cols=145 Identities=28% Similarity=0.407 Sum_probs=111.8
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
.++|||+|||.++++++|+++|..||.|..+.+..|+.++.++|||||+|.+.++|..|+..+++..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999654
Q ss_pred -CCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC
Q 014230 221 -GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (428)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~ 299 (428)
.......... ... ...................+++.+++..++..++...|..+| .+....+...
T Consensus 195 ~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNN----LDA--------SFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRG--DIVRASLPPS 260 (306)
T ss_pred ccccccccccc----cch--------hhhccccccccccccccceeeccccccccchhHHHHhccccc--cceeeeccCC
Confidence 1111000000 000 000000111222334457899999999999999999999999 6666666554
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.47 E-value=6.4e-14 Score=114.81 Aligned_cols=86 Identities=30% Similarity=0.504 Sum_probs=79.9
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
+......|.|.||...++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|+++|+|..++|+.|+|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EccCCC
Q 014230 217 WATKGA 222 (428)
Q Consensus 217 ~~~~~~ 222 (428)
++.-..
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 875443
No 82
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=5.5e-13 Score=96.90 Aligned_cols=70 Identities=20% Similarity=0.316 Sum_probs=67.3
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC---ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
+.|||+|||+++|.|+.-++|.+|| .|..|++... +|.|||.|++..+|.+|+..|+|. .+.++.|.|-|
T Consensus 19 riLyirNLp~~ITseemydlFGkyg--~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~---n~~~ryl~vly 91 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYG--TIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGY---NVDNRYLVVLY 91 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhccc--ceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccc---ccCCceEEEEe
Confidence 6799999999999999999999999 9999999976 799999999999999999999999 99999999987
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=3.3e-13 Score=124.28 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccH--HHHHHHHHHhCCCcccCceeeeecccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDR--RSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~--~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
...+|||+||++.++++||+.+|..||.|.+|.|++...+|||||+|.+. .++.+|+..|||..+.|+.|+|+.+++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34679999999999999999999999999999999887789999999987 789999999999999999999998865
No 84
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=7.8e-13 Score=111.53 Aligned_cols=76 Identities=32% Similarity=0.450 Sum_probs=71.0
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
..++|.|.||+.++++++|+++|.+|| .|.++.+-++ ||||||+|.++++|.+|++.|||+ -+++-.|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg--~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~---gyd~LILr 262 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFG--PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY---GYDNLILR 262 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccC--ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc---ccceEEEE
Confidence 557899999999999999999999999 8888888876 899999999999999999999999 89999999
Q ss_pred EeeCCCC
Q 014230 335 CSWGSKP 341 (428)
Q Consensus 335 v~~a~~~ 341 (428)
|.|+++.
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999864
No 85
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.4e-13 Score=101.96 Aligned_cols=77 Identities=27% Similarity=0.505 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
..++||||+||...++||.|.++|++.|+|..|.+-.|+. .|||||+|.+.++|+.|++.+++..+..+.|.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4568899999999999999999999999999999987764 389999999999999999999999999999999886
Q ss_pred c
Q 014230 130 Y 130 (428)
Q Consensus 130 ~ 130 (428)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 86
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.4e-13 Score=107.88 Aligned_cols=75 Identities=29% Similarity=0.516 Sum_probs=69.3
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
.++|||+||+..+++.||..+|..|| .+..|-|.+. .|||||+|+++.+|..|+..|+|. .|+|..|+|.+.+-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG--~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~---~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYG--PLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGK---DICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcC--cceeEEEeecCCCceEEeccCcccHHHHHhhcCCc---cccCceEEEEeecC
Confidence 37899999999999999999999999 8888887766 799999999999999999999999 99999999998764
Q ss_pred C
Q 014230 341 P 341 (428)
Q Consensus 341 ~ 341 (428)
.
T Consensus 85 ~ 85 (195)
T KOG0107|consen 85 R 85 (195)
T ss_pred C
Confidence 3
No 87
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=1.8e-13 Score=129.38 Aligned_cols=82 Identities=30% Similarity=0.620 Sum_probs=79.0
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
+.+||+|+|+++++++|.++|+..|.|.+++++.|+.+|+.+||+|++|.+.++|.+|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 014230 222 AG 223 (428)
Q Consensus 222 ~~ 223 (428)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.7e-12 Score=122.04 Aligned_cols=167 Identities=19% Similarity=0.334 Sum_probs=130.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
-....++|++||..++++.++++.+.||++...+++.+. ++||||.+|.++.....|+..|||..+.++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 344569999999999999999999999999999998875 4689999999999999999999999999999999887
Q ss_pred cccCCccC---------------------CCCcceeEecCCC--ccc-C-------HHHHHHHhccCCCceEEEEeecC-
Q 014230 130 YASGQRED---------------------TSGHFNIFVGDLS--PEV-T-------DATLFACFSVYPSCSDARVMWDQ- 177 (428)
Q Consensus 130 ~~~~~~~~---------------------~~~~~~l~v~~lp--~~~-~-------~~~l~~~f~~~g~v~~~~i~~~~- 177 (428)
........ ..++..|.+.|+= .+. + -++++..|.+||.|.+|.+.++.
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 54322111 1122233333321 111 1 13566678899999999998772
Q ss_pred --CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 178 --KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 178 --~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
......|..||+|.+.+++++|+++|+|.+|.||++...|-..
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 2234567799999999999999999999999999999988643
No 89
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.41 E-value=7.9e-13 Score=94.52 Aligned_cols=65 Identities=34% Similarity=0.692 Sum_probs=59.5
Q ss_pred EEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 265 l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
|+|+|||+++++++|+++|+.|| .|..+++.++ +++|||+|.+.++|.+|++.+++. .++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g--~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~---~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFG--PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGK---EIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSS--BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTE---EETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcC--CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCc---EECCEEcC
Confidence 79999999999999999999999 8999999987 699999999999999999999988 89999985
No 90
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.1e-13 Score=112.80 Aligned_cols=85 Identities=33% Similarity=0.518 Sum_probs=80.7
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
..++|||++|..+++|.-|...|-+||.|.+|.+..|.+++++|||+||+|.-.|+|..||..+|+.++.||+|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014230 220 KGAGN 224 (428)
Q Consensus 220 ~~~~~ 224 (428)
+....
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 86543
No 91
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.1e-12 Score=110.30 Aligned_cols=76 Identities=33% Similarity=0.539 Sum_probs=66.7
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
+...++|||++|+++++.++|+++|++|| +|.+..++.| |||+||+|+|.++|.+|++..|- .|+||+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfG--eI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p----iIdGR~ 82 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFG--EIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP----IIDGRK 82 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhC--ceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC----cccccc
Confidence 33458999999999999999999999999 8888777754 89999999999999999997665 599999
Q ss_pred EEEeeCCC
Q 014230 333 MKCSWGSK 340 (428)
Q Consensus 333 l~v~~a~~ 340 (428)
..|.++.-
T Consensus 83 aNcnlA~l 90 (247)
T KOG0149|consen 83 ANCNLASL 90 (247)
T ss_pred cccchhhh
Confidence 99987654
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=7.5e-13 Score=108.63 Aligned_cols=77 Identities=27% Similarity=0.451 Sum_probs=71.8
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
...+|.|-||.+-++.++|+.+|++|| .|.+|.|.+| +|||||.|.+..+|+.|+++|+|. .++|+.|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG--~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~---~ldgRelr 86 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYG--RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA---VLDGRELR 86 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhC--cccceecccccccccccceeEEEeeecchHHHHHHhhcce---eeccceee
Confidence 347899999999999999999999999 9999999987 799999999999999999999999 99999999
Q ss_pred EeeCCCCC
Q 014230 335 CSWGSKPT 342 (428)
Q Consensus 335 v~~a~~~~ 342 (428)
|.+++--.
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99887543
No 93
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=6.2e-12 Score=116.25 Aligned_cols=145 Identities=26% Similarity=0.392 Sum_probs=112.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc-
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY- 130 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~- 130 (428)
.++|||+|||.++|+++|.++|..||.|..|.+..++ .+|||||+|.+.++|..|+..+++..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5889999999999999999999999999999998874 46999999999999999999999999999999999953
Q ss_pred ---ccCCcc-----------------CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEe
Q 014230 131 ---ASGQRE-----------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190 (428)
Q Consensus 131 ---~~~~~~-----------------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f 190 (428)
...... .......+++.+++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 221111 123456789999999999999999999999997766654433333333334444
Q ss_pred CCHHHHHHHH
Q 014230 191 RNQQDAQSAI 200 (428)
Q Consensus 191 ~~~~~a~~a~ 200 (428)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 3333333333
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.36 E-value=2.4e-12 Score=118.65 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=71.0
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCH--HHHHHHHHHhCCceeCCeeEEEE
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ--QDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~--~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
....+||||||++.+++++|..+|..||.|.++.|++ .+| ||||||+|.+. .++.+||..|||..|.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3456899999999999999999999999999999994 456 99999999987 78999999999999999999999
Q ss_pred EccC
Q 014230 217 WATK 220 (428)
Q Consensus 217 ~~~~ 220 (428)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8754
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=5.5e-12 Score=90.33 Aligned_cols=71 Identities=39% Similarity=0.741 Sum_probs=66.7
Q ss_pred eeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
+|+|+|||..+++++|+++|+.||.|..+.+..++ +.++|+|||+|.+.++|.+|+..+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998775 778999999999999999999999999999999886
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=7.9e-12 Score=89.48 Aligned_cols=68 Identities=40% Similarity=0.702 Sum_probs=63.7
Q ss_pred eEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCc----cEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK----GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 264 ~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
+|+|+|||..+++++|+++|+.|| .+.++.+.+++ |+|||+|.+.++|.+|++.+++. .+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g--~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~---~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFG--PIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGT---KLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcC--CEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCc---EECCEEEeeC
Confidence 489999999999999999999999 88999998875 99999999999999999999998 8999999874
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=6.5e-12 Score=107.70 Aligned_cols=76 Identities=16% Similarity=0.285 Sum_probs=69.7
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
.++|||+||++.+|+++|+++|+.||.|.+|+|.+|. +.++||||+|.++++++.|+. |+|..|.++.|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4699999999999999999999999999999999873 556899999999999999995 999999999999987654
No 98
>smart00360 RRM RNA recognition motif.
Probab=99.33 E-value=6.6e-12 Score=89.56 Aligned_cols=71 Identities=38% Similarity=0.713 Sum_probs=66.6
Q ss_pred ecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 146 VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 146 v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|++.+++..+.|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887788999999999999999999999999999999998873
No 99
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=1.1e-11 Score=106.22 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=67.5
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC---ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
.+.+|||+||++.+|+++|+++|+.|| .|.+|++.++ +++|||+|++.++|..|+ .|+|. .|.+++|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G--~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa---~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCG--AIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGA---TIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcC--CeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCC---eeCCceEEEEe
Confidence 347999999999999999999999999 9999999987 579999999999999998 69999 89999999976
Q ss_pred CCC
Q 014230 338 GSK 340 (428)
Q Consensus 338 a~~ 340 (428)
...
T Consensus 78 ~~~ 80 (243)
T PLN03121 78 WGQ 80 (243)
T ss_pred Ccc
Confidence 543
No 100
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=8.1e-12 Score=84.77 Aligned_cols=55 Identities=27% Similarity=0.559 Sum_probs=51.8
Q ss_pred HHHHHhccCCeeEEEEEEeCCc-cEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeC
Q 014230 279 LHRHFHSLGAGVIEEVRVQRDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (428)
Q Consensus 279 L~~~F~~~G~~~i~~i~i~~~~-g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (428)
|+++|++|| .|.++.+.+++ ++|||+|.+.++|..|++.|||. .++|++|+|.|+
T Consensus 1 L~~~f~~fG--~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~---~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFG--EVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGR---QFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS---EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTS---EETTEEEEEEEE
T ss_pred ChHHhCCcc--cEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEEC
Confidence 689999999 99999999997 99999999999999999999999 999999999985
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.31 E-value=2.1e-11 Score=116.87 Aligned_cols=190 Identities=11% Similarity=0.030 Sum_probs=126.2
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
.+.+-+.+++.+.++.|++++|... .|....+..+...+.-.|.++|+|....++.+|+.. +...+-.|.+.+.....
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 4556678999999999999999753 455566666655555588899999999999999873 55666777777754433
Q ss_pred CCCCCCCcCCcccc-cchhcc---CCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEE-EE
Q 014230 221 GAGNNEDKQSSDAK-SVVELT---NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-VR 295 (428)
Q Consensus 221 ~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~-i~ 295 (428)
.............. ...... ...............+.......+|||..||..+++.++.++|...- .|++ |.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~--~Ved~I~ 466 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA--AVEDFIE 466 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh--hhhheeE
Confidence 22211111110000 000000 00011111111122333445568999999999999999999999765 5555 66
Q ss_pred EeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 296 VQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 296 i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
+-+. ++.|||.|..++++..|...-+.+ .++.+.|+|.-
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~---y~G~r~irv~s 510 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKF---YPGHRIIRVDS 510 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhccccc---ccCceEEEeec
Confidence 6543 689999999999999998877777 78899999864
No 102
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.2e-12 Score=106.85 Aligned_cols=83 Identities=36% Similarity=0.576 Sum_probs=75.7
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
..++|||++|..++|+.-|...|=+|| .|.+|.++-| |||+||+|...|+|..|+..||+. ++.||.|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFG--DI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes---EL~Grtir 83 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFG--DIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES---ELFGRTIR 83 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcccccc--chhhcccccchhcccccceeEEEeeccchhHHHhhcCchh---hhcceeEE
Confidence 348999999999999999999999999 9999999865 899999999999999999999999 99999999
Q ss_pred EeeCCCCCCCCCCC
Q 014230 335 CSWGSKPTPPGTSS 348 (428)
Q Consensus 335 v~~a~~~~~~~~~~ 348 (428)
|.|+++......+.
T Consensus 84 VN~AkP~kikegsq 97 (298)
T KOG0111|consen 84 VNLAKPEKIKEGSQ 97 (298)
T ss_pred EeecCCccccCCCC
Confidence 99999876655444
No 103
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1.5e-11 Score=106.83 Aligned_cols=79 Identities=23% Similarity=0.446 Sum_probs=72.8
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCe
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (428)
...+++||||+-|+++++|.+|+..|+.|| .|+.|++.++ +|||||+|++..+...|.+..+|. .|+|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG--~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~---~Idgr 171 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYG--PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI---KIDGR 171 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcC--cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc---eecCc
Confidence 345679999999999999999999999999 9999999987 899999999999999999999999 99999
Q ss_pred eEEEeeCCCC
Q 014230 332 QMKCSWGSKP 341 (428)
Q Consensus 332 ~l~v~~a~~~ 341 (428)
.|.|.+-+-.
T Consensus 172 ri~VDvERgR 181 (335)
T KOG0113|consen 172 RILVDVERGR 181 (335)
T ss_pred EEEEEecccc
Confidence 9999986543
No 104
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=5.9e-12 Score=96.15 Aligned_cols=84 Identities=24% Similarity=0.457 Sum_probs=78.7
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
.....|||.++-...++++|.+.|..||+|+.+.+-.|+.||-.|||++|+|.+.++|.+|+..+||..+.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 014230 219 TKGA 222 (428)
Q Consensus 219 ~~~~ 222 (428)
-.+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 6543
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.28 E-value=1.4e-11 Score=110.30 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=121.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc---c-CCceeEEEeec---CCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSS---T-GPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~---~-G~v~~i~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
..|.+++||.++++.|+.+||-+ . |..+.|.++.. +-+|-|||.|..+++|..|+.+ |...+.-+.|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 45889999999999999999953 2 24456666553 3479999999999999999975 333444344444222
Q ss_pred cc----------------------------cCCccCCCCcceeEecCCCcccCHHHHHHHhccCCC-ce--EEEEeecCC
Q 014230 130 YA----------------------------SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-CS--DARVMWDQK 178 (428)
Q Consensus 130 ~~----------------------------~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~--~~~i~~~~~ 178 (428)
.. ...........+|.+++||+..+.++|.++|..|-. |. .|.++.+ .
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~ 319 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-G 319 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-C
Confidence 10 000112233568999999999999999999998853 33 3677777 5
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 179 TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 179 ~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
.|+..|-|||+|.+.++|..|...++++....|.|.|-.+.
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 78999999999999999999999999888889999987554
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=1.6e-11 Score=83.28 Aligned_cols=56 Identities=36% Similarity=0.650 Sum_probs=51.4
Q ss_pred HHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 73 LQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 73 l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
|+++|++||.|.+|.+..++ +++|||+|.+.++|.+|++.||+..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997776 589999999999999999999999999999999885
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.5e-11 Score=93.99 Aligned_cols=80 Identities=29% Similarity=0.487 Sum_probs=72.1
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
...+-.|||.+++...++++|.+.|..|| +|+.|.+.-+ ||||+|+|++.++|..|+..+||. .+.|.+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyG--eiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~---~ll~q~ 143 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYG--EIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA---ELLGQN 143 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcc--cccceeeccccccccccceeeeehHhHHHHHHHHHhccch---hhhCCc
Confidence 33457899999999999999999999999 9999888765 799999999999999999999999 999999
Q ss_pred EEEeeCCCCCC
Q 014230 333 MKCSWGSKPTP 343 (428)
Q Consensus 333 l~v~~a~~~~~ 343 (428)
|.|.|+-...+
T Consensus 144 v~VDw~Fv~gp 154 (170)
T KOG0130|consen 144 VSVDWCFVKGP 154 (170)
T ss_pred eeEEEEEecCC
Confidence 99999865544
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.4e-12 Score=128.07 Aligned_cols=227 Identities=19% Similarity=0.206 Sum_probs=181.4
Q ss_pred CCeEEEcCCCCCCCHH-HHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 56 CRSVYVGNIHTQVTEP-LLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~-~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
.+...+.++-+..... ..+..|..+|.|++|+....+ ...+.++.+....+++.+.. ..+..+.++...+..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 3446667776665544 678899999999999886632 12378899999999988874 56778888888888776
Q ss_pred ccCCccCC-------CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 014230 131 ASGQREDT-------SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (428)
Q Consensus 131 ~~~~~~~~-------~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 203 (428)
+....... ....++||+||+..+.+.+|...|..+|.+..+.+......++.+|+|||+|.+.+.+.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 65433222 22367899999999999999999999999888877766677899999999999999999999854
Q ss_pred CCceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHH
Q 014230 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283 (428)
Q Consensus 204 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F 283 (428)
.++.++ + ..|+|.|.|+..|.++|+.+|
T Consensus 730 d~~~~g---------K-------------------------------------------~~v~i~g~pf~gt~e~~k~l~ 757 (881)
T KOG0128|consen 730 DSCFFG---------K-------------------------------------------ISVAISGPPFQGTKEELKSLA 757 (881)
T ss_pred hhhhhh---------h-------------------------------------------hhhheeCCCCCCchHHHHhhc
Confidence 444333 0 359999999999999999999
Q ss_pred hccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 284 HSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 284 ~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
+++| .+.++++... +|.|||.|.+..+|.+++..+... .+..+.+.|..+++
T Consensus 758 ~~~g--n~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~---~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 758 SKTG--NVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVA---GKRENNGEVQVSNP 814 (881)
T ss_pred cccC--CccccchhhhhccccccceeccCCCcchhhhhcccchhh---hhhhcCccccccCC
Confidence 9999 7777766543 799999999999999999988888 77777787877655
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=5.7e-11 Score=85.46 Aligned_cols=74 Identities=39% Similarity=0.773 Sum_probs=68.3
Q ss_pred eeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
+|+|+|||..+++++|+++|+.||.|..+.+..++.+ .++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987544 7789999999999999999999999999999998864
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=3.1e-11 Score=85.86 Aligned_cols=61 Identities=25% Similarity=0.479 Sum_probs=55.2
Q ss_pred HHHHHHHhc----cCCCceEEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 155 DATLFACFS----VYPSCSDAR-VMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 155 ~~~l~~~f~----~~g~v~~~~-i~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
+++|+++|+ .||.|.++. +..++.+ ++++||+||+|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 577888888 999999995 7777666 899999999999999999999999999999999986
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=6.1e-11 Score=85.28 Aligned_cols=71 Identities=35% Similarity=0.703 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 58 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
+|+|+|||..+++++|+++|+.+|.|..+.+..++. .++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999988763 68999999999999999999999999999998864
No 112
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=4.3e-11 Score=85.27 Aligned_cols=67 Identities=37% Similarity=0.681 Sum_probs=61.7
Q ss_pred EcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 61 VGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 61 v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
|+|||..+++++|+++|+.||.|..+.+..++. +|+|||+|.+.++|..|+..+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999988754 6899999999999999999999999999998873
No 113
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.21 E-value=4.4e-10 Score=108.05 Aligned_cols=160 Identities=13% Similarity=0.023 Sum_probs=116.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEee----cCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~----~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
.+.+-+.+.+....+.|++++|... .|..+.+.. ...+|-++|.|....++.+|++ -|...+..+.+.+.....
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCc
Confidence 3457889999999999999998632 232322222 2347899999999999999986 355556666666643321
Q ss_pred cCC------------------------------------ccCCCCcceeEecCCCcccCHHHHHHHhccCCCceE-EEEe
Q 014230 132 SGQ------------------------------------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVM 174 (428)
Q Consensus 132 ~~~------------------------------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~i~ 174 (428)
... +.......+|||..||..+++.++.++|...-.|++ |.+.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 110 011134578999999999999999999998778877 5555
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 175 ~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
+. -+++-++.|||+|.+++++..|...-+.+.++.|.|+|.-.
T Consensus 469 ~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 469 RL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 44 46788889999999998888888655666778888888643
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.1e-10 Score=107.24 Aligned_cols=150 Identities=22% Similarity=0.277 Sum_probs=111.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeec------CCCc---eEEEEEccHHHHHHHHHHhCC----Ccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK------DKSS---YGFIHYFDRRSAAMAILSLNG----RHL 119 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~------~~~g---~afV~f~~~~~A~~a~~~l~~----~~~ 119 (428)
+.-++.|||++||.+++|+.|...|..||.+.--.-.+. ..+| |+|+-|+++.+...-+..... ..|
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 445678999999999999999999999998732111111 1235 999999999998876654322 111
Q ss_pred -------cCceeeeecc-ccc-----CCccCCCCcceeEecCCCcccCHHHHHHHhc-cCCCceEEEEeecCCCCCcccE
Q 014230 120 -------FGQPIKVNWA-YAS-----GQREDTSGHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQKTGRSRGF 185 (428)
Q Consensus 120 -------~g~~l~v~~~-~~~-----~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~g~ 185 (428)
..+.+.|..- ..+ .......+.+|||||+||..++.++|..+|+ -||.|.-+-|-.|++-+-++|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 1122222211 000 1122336678999999999999999999998 6999999999999888889999
Q ss_pred EEEEeCCHHHHHHHHHH
Q 014230 186 GFVSFRNQQDAQSAIND 202 (428)
Q Consensus 186 afV~f~~~~~a~~a~~~ 202 (428)
+=|+|.+..+-.+||.+
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999974
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=6.4e-12 Score=104.17 Aligned_cols=144 Identities=24% Similarity=0.354 Sum_probs=120.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
+..-+||||.|+-..++|+-|.++|-..|+|.+|.|..++ +..||||.|.++-+..-|++.+||..+.+.++.+.+-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3455889999999999999999999999999999997754 34599999999999999999999999999999986432
Q ss_pred ccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
..+.. -|...++++.+.+.|+.-|.+..+++..+ .+|+++.++|+.+......-.++....+....
T Consensus 86 G~sha------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 86 GNSHA------------PLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred CCCcc------------hhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 22110 16777899999999999999999999888 45889999999999888888888766665443
No 116
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.16 E-value=3.5e-11 Score=102.22 Aligned_cols=160 Identities=29% Similarity=0.456 Sum_probs=124.6
Q ss_pred EEEcCCCCCCCHHH-H--HHHHhccCCceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 59 VYVGNIHTQVTEPL-L--QEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 59 l~v~nLp~~~t~~~-l--~~~f~~~G~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
.+++++-..+..+- | ...|+.|-.+...++++++ .++++|+.|.....-.++-..-+++.+.-..|++......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44555544444333 3 6677777777676776654 4589999999887777776666666666666666543322
Q ss_pred C---CccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 133 G---QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 133 ~---~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
. ..+-+.++.+||.+.|..+++++.|...|.+|-.....++++|+.+++++||+||.|.+..++.+|+.+++|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 1 2233456789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEc
Q 014230 210 SRQIRCNWA 218 (428)
Q Consensus 210 g~~i~v~~~ 218 (428)
.+.|+++-+
T Consensus 259 srpiklRkS 267 (290)
T KOG0226|consen 259 SRPIKLRKS 267 (290)
T ss_pred cchhHhhhh
Confidence 999988644
No 117
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=6.9e-12 Score=100.95 Aligned_cols=73 Identities=29% Similarity=0.511 Sum_probs=69.0
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
.-|||+|||+++||.||.-+|++|| +|.+|.+.|| +||||+.|++-.+..-|+..|||. .|.||.|+|.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyG--e~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi---ki~gRtirVD 110 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYG--EIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI---KILGRTIRVD 110 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccC--ceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc---eecceeEEee
Confidence 5799999999999999999999999 9999999987 799999999999999999999999 9999999998
Q ss_pred eCCC
Q 014230 337 WGSK 340 (428)
Q Consensus 337 ~a~~ 340 (428)
....
T Consensus 111 Hv~~ 114 (219)
T KOG0126|consen 111 HVSN 114 (219)
T ss_pred eccc
Confidence 7554
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.13 E-value=1.1e-10 Score=113.61 Aligned_cols=107 Identities=25% Similarity=0.365 Sum_probs=88.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCCc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR 135 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 135 (428)
++||||++|+..++|.||.++|+.||.|.+|.++..+ |||||.+.+..+|.+|+.+|++..+.++.|+|.|+.....+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 5889999999999999999999999999999987765 79999999999999999999999999999999999887665
Q ss_pred cCCCC--cceeEecCCCcccCHHHHHHHhcc
Q 014230 136 EDTSG--HFNIFVGDLSPEVTDATLFACFSV 164 (428)
Q Consensus 136 ~~~~~--~~~l~v~~lp~~~~~~~l~~~f~~ 164 (428)
.+-.. ...+=|.-||++.-.+++..+++.
T Consensus 499 se~k~~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 499 SEYKDYWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred hhhhhhhhcccCeeEeehHhcCHHHHHhhhh
Confidence 52222 233456667876545557666653
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2e-09 Score=100.83 Aligned_cols=161 Identities=22% Similarity=0.269 Sum_probs=106.7
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCC---CCCccc---EEEEEeCCHHHHHHHHHHhCCceeCCee
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK---TGRSRG---FGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~---~~~~~g---~afV~f~~~~~a~~a~~~l~~~~~~g~~ 212 (428)
...++|||++||++++|+.|...|..||.+. |......+ --.++| |+|+.|+++.....-+.++.. .-.+-.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~y 334 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYY 334 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceE
Confidence 4568999999999999999999999999873 23332111 123566 999999999998887776643 112222
Q ss_pred EEEEEccCCCCCC--CCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHh-ccCCe
Q 014230 213 IRCNWATKGAGNN--EDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH-SLGAG 289 (428)
Q Consensus 213 i~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~~ 289 (428)
+.|.-.+.+.... ......+..-.. .....-.+.+||||++||.-++.++|-.+|+ -||
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~----------------d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG-- 396 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVL----------------DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG-- 396 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhh----------------ccCcccCccceEEecCCCCcchHHHHHHHHHHhcC--
Confidence 3332222211100 000000000000 0111223448999999999999999999999 799
Q ss_pred eEEEEEEeCC------ccEEEEEeCCHHHHHHHHHH
Q 014230 290 VIEEVRVQRD------KGFGFVRYSTHAEAALAIQM 319 (428)
Q Consensus 290 ~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~ 319 (428)
.|..+-|..| +|-|-|+|.+..+-.+|+.+
T Consensus 397 gV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 397 GVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 6777766665 79999999999999999864
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=2.8e-10 Score=101.07 Aligned_cols=82 Identities=29% Similarity=0.541 Sum_probs=72.7
Q ss_pred CCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 255 APENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 255 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
.+..+...++|||++|-..+++.+|+++|.+|| +|.+|++...++||||+|.+.++|+.|..+.-.. +.|+|.+|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyG--eirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~--lvI~G~Rl~ 296 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYG--EIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNK--LVINGFRLK 296 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcC--CeeeEEeecccccceeeehhhHHHHHHHHhhcce--eeecceEEE
Confidence 344555668999999999999999999999999 9999999999999999999999999998665443 289999999
Q ss_pred EeeCCC
Q 014230 335 CSWGSK 340 (428)
Q Consensus 335 v~~a~~ 340 (428)
|.|++.
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 121
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.11 E-value=1.8e-10 Score=112.10 Aligned_cols=78 Identities=24% Similarity=0.434 Sum_probs=74.0
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
.++||||+.|+..+++.||.++|+.|| +|.+|.+...+|||||.+.++.+|.+|+..|+.. .+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefG--eiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~---kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFG--EIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNV---KVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcc--cceeEeeccCCceeEEEEeehhHHHHHHHHHhcc---cccceeeEEeeecc
Confidence 458999999999999999999999999 9999999999999999999999999999999999 89999999999886
Q ss_pred CCC
Q 014230 341 PTP 343 (428)
Q Consensus 341 ~~~ 343 (428)
+..
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 644
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.1e-11 Score=104.39 Aligned_cols=85 Identities=25% Similarity=0.422 Sum_probs=80.3
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
...++.+.|||-.|.+-++.++|.-+|+.||.|.+|.|++|++||.+..||||+|.+.+++++|.-.|++..|+.+.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccC
Q 014230 216 NWATK 220 (428)
Q Consensus 216 ~~~~~ 220 (428)
.|+..
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 98754
No 123
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.10 E-value=1.9e-10 Score=108.99 Aligned_cols=78 Identities=35% Similarity=0.586 Sum_probs=73.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
+.|||+|||+++++++|..+|+..|.|.+++++.|+. +||+|++|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7799999999999999999999999999999999864 589999999999999999999999999999999998765
Q ss_pred CC
Q 014230 133 GQ 134 (428)
Q Consensus 133 ~~ 134 (428)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=3.8e-11 Score=118.20 Aligned_cols=143 Identities=16% Similarity=0.259 Sum_probs=118.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEe----ecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI----RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
.++||+||+..+.++||...|.++|.+..+.+. .++-+|+|||.|.+++++.+|+...++.. .|+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~-~gK---------- 736 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF-FGK---------- 736 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh-hhh----------
Confidence 458999999999999999999999987766554 23346999999999999999997554443 331
Q ss_pred CCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 014230 133 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (428)
Q Consensus 133 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 212 (428)
..|+|.|.|+..|.++++.+|..+|.+.+++++.. ..|+++|.++|.|.++.++.++....+...+..+.
T Consensus 737 ---------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 737 ---------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred ---------hhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 37899999999999999999999999999987766 57899999999999999999998877777666666
Q ss_pred EEEEEccC
Q 014230 213 IRCNWATK 220 (428)
Q Consensus 213 i~v~~~~~ 220 (428)
+.|..+.+
T Consensus 807 ~~v~vsnp 814 (881)
T KOG0128|consen 807 GEVQVSNP 814 (881)
T ss_pred ccccccCC
Confidence 66665443
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=1.6e-10 Score=114.43 Aligned_cols=163 Identities=18% Similarity=0.312 Sum_probs=137.1
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
..+++||++||+..+++.+|+..|..+|.|.+|.|...+ -+...-|+||.|.+...+..|...+.+..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 457899999999999999999999999999999887553 2344458999999999999999888888886656655544
Q ss_pred cCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeC
Q 014230 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (428)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~ 298 (428)
..+ ....+.+|+++|+.-+....|...|..|| .|..|.+..
T Consensus 449 ~~k-------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fG--pir~Idy~h 489 (975)
T KOG0112|consen 449 QPK-------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFG--PIRIIDYRH 489 (975)
T ss_pred ccc-------------------------------------cccceeeccCCCCCCChHHHHHHHhhccC--cceeeeccc
Confidence 321 11226799999999999999999999999 788888888
Q ss_pred CccEEEEEeCCHHHHHHHHHHhcCCCcccccC--eeEEEeeCCCCCCC
Q 014230 299 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPTPP 344 (428)
Q Consensus 299 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a~~~~~~ 344 (428)
...||+|.|.+...|..|+..|.|. .|++ ++++|.|+..+...
T Consensus 490 gq~yayi~yes~~~aq~a~~~~rga---p~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 490 GQPYAYIQYESPPAAQAATHDMRGA---PLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred CCcceeeecccCccchhhHHHHhcC---cCCCCCcccccccccCCCCC
Confidence 8889999999999999999999999 7876 78999999876543
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.97 E-value=2.1e-09 Score=88.95 Aligned_cols=83 Identities=17% Similarity=0.358 Sum_probs=76.4
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccC-CCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
.....++|..+|.-+.+.++..+|..| |.|..+++-+++.||.++|||||+|.+.+.|+-|-+.||+..+.++-|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344578999999999999999999998 7888888889999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 014230 218 ATKG 221 (428)
Q Consensus 218 ~~~~ 221 (428)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7765
No 127
>smart00361 RRM_1 RNA recognition motif.
Probab=98.93 E-value=3.8e-09 Score=75.07 Aligned_cols=56 Identities=23% Similarity=0.446 Sum_probs=48.1
Q ss_pred HHHHHHHHh----ccCCeeEEEEE---EeC------CccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 276 QLDLHRHFH----SLGAGVIEEVR---VQR------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 276 ~~~L~~~F~----~~G~~~i~~i~---i~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
+++|+++|+ +|| .|.+|. +.+ .+|++||+|.+.++|.+|++.|||. .+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG--~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~---~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFG--EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR---YFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcC--CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC---EECCEEEEeC
Confidence 578888888 999 777774 322 3899999999999999999999999 9999999874
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=2.4e-10 Score=94.91 Aligned_cols=146 Identities=22% Similarity=0.272 Sum_probs=115.2
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
...++|||.|+...++|+-|.++|-.-|+|..|.|..+ ..++.| ||||.|.++.....|++.+||..+.++.+.+++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 34579999999999999999999999999999998876 456667 9999999999999999999999999999987643
Q ss_pred cCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeC
Q 014230 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (428)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~ 298 (428)
..... .-|...++++.+.+.|+.-| .+..+++..
T Consensus 85 ~G~sh--------------------------------------------apld~r~~~ei~~~v~s~a~--p~~~~R~~~ 118 (267)
T KOG4454|consen 85 CGNSH--------------------------------------------APLDERVTEEILYEVFSQAG--PIEGVRIPT 118 (267)
T ss_pred cCCCc--------------------------------------------chhhhhcchhhheeeecccC--CCCCccccc
Confidence 22110 01566788898999999988 777777765
Q ss_pred C-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 299 D-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 299 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
+ +.++|+.+-..-..-.++....+. ...-+++.+
T Consensus 119 ~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l---~~~~~~~~~ 157 (267)
T KOG4454|consen 119 DNDGRNRNFGFVTYQRLCAVPFALDLYQGL---ELFQKKVTI 157 (267)
T ss_pred cccCCccCccchhhhhhhcCcHHhhhhccc---CcCCCCccc
Confidence 4 568899887777777777777666 444444433
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=3.5e-09 Score=94.24 Aligned_cols=78 Identities=18% Similarity=0.465 Sum_probs=69.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHH-hCCCcccCceeeeeccc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS-LNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~-l~~~~~~g~~l~v~~~~ 130 (428)
.+....+|||++|-..++|.+|+++|.+||+|++|.++..+ ++|||+|.+.++|+.|..+ +|...|.|++|+|.|..
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 46677899999999999999999999999999999998876 5999999999999998865 55566899999999998
Q ss_pred c
Q 014230 131 A 131 (428)
Q Consensus 131 ~ 131 (428)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 130
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.90 E-value=2.2e-09 Score=91.40 Aligned_cols=163 Identities=25% Similarity=0.343 Sum_probs=115.0
Q ss_pred ceeEecCCCcccCHHH-H--HHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 142 FNIFVGDLSPEVTDAT-L--FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~-l--~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
...+++++-..+..+- | ...|+.+-.+....++++. .+.-++++|+.|.....-.++-..-+++.++-+.++..-.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4556666655555443 2 5667777677677777763 5678889999999887777777666677777666554322
Q ss_pred cCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccC----CeeEEEE
Q 014230 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEV 294 (428)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G----~~~i~~i 294 (428)
..-..... .+-.....+||.+.|..+++++.|-..|.+|- ...|.+-
T Consensus 176 tswedPsl-----------------------------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk 226 (290)
T KOG0226|consen 176 TSWEDPSL-----------------------------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK 226 (290)
T ss_pred cccCCccc-----------------------------ccCccccceeecccccccccHHHHHHHHHhccchhhccccccc
Confidence 11100000 00111126799999999999999999999986 2244555
Q ss_pred EEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 295 RVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 295 ~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
+..+++||+||.|.+..++.+|+++|+|+ .++.++|+++-
T Consensus 227 RTgKSkgygfVSf~~pad~~rAmrem~gk---yVgsrpiklRk 266 (290)
T KOG0226|consen 227 RTGKSKGYGFVSFRDPADYVRAMREMNGK---YVGSRPIKLRK 266 (290)
T ss_pred cccccccceeeeecCHHHHHHHHHhhccc---ccccchhHhhh
Confidence 55556899999999999999999999999 99999998753
No 131
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.5e-09 Score=93.53 Aligned_cols=78 Identities=22% Similarity=0.448 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCc----eEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g----~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
++...|||..|.+-+|++||.-+|+.||.|.+|.++++..+| ||||+|.+.+++++|.-++++..|..+.|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 344569999999999999999999999999999999998875 9999999999999999999999999999999987
Q ss_pred cc
Q 014230 130 YA 131 (428)
Q Consensus 130 ~~ 131 (428)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 54
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=4.9e-09 Score=99.14 Aligned_cols=181 Identities=18% Similarity=0.220 Sum_probs=116.3
Q ss_pred ccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 135 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
.+.+.+.++|+|-|||..+++++|+.+|+.||+|+.|+. +...+|.+||+|.|..+|++|+++|++..+.|+.|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 344567789999999999999999999999999999654 445678999999999999999999999999999988
Q ss_pred EEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEE
Q 014230 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (428)
Q Consensus 215 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i 294 (428)
........... ... ....... ........+...+. -.+++ .|++..+...++..|.-+| .+..-
T Consensus 144 ~~~~~~~~~~~----~~~----~~~~~~~----~~p~a~s~pgg~~~-~~~~g-~l~P~~s~~~~~~~~~~~~--~~~~~ 207 (549)
T KOG4660|consen 144 RPGGARRAMGL----QSG----TSFLNHF----GSPLANSPPGGWPR-GQLFG-MLSPTRSSILLEHISSVDG--SSPGR 207 (549)
T ss_pred CCCcccccchh----ccc----chhhhhc----cchhhcCCCCCCcC-Cccee-eeccchhhhhhhcchhccC--ccccc
Confidence 22111111000 000 0000000 00000111111111 22333 3888888877777788888 44332
Q ss_pred EEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 295 RVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 295 ~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
....-+..-|++|.+..++..+...+ |+ .+.+......+...
T Consensus 208 ~~~~~~hq~~~~~~~~~s~a~~~~~~-G~---~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 208 ETPLLNHQRFVEFADNRSYAFSEPRG-GF---LISNSSGVITFSGP 249 (549)
T ss_pred cccchhhhhhhhhccccchhhcccCC-ce---ecCCCCceEEecCC
Confidence 22222335678888888886666544 55 77777777777654
No 133
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.74 E-value=1.1e-08 Score=92.93 Aligned_cols=172 Identities=25% Similarity=0.281 Sum_probs=129.4
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
...++|++++...+.+.++..++..+|.+....+........++|++.+.|...+.+..++.........++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 45789999999999988888999999988777776655678899999999999999999998433345555555543333
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~ 299 (428)
......... ..........+.++|++++..+++++|+++|..+| .|..+++...
T Consensus 167 ~~~~~~~n~------------------------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~--~i~~~r~~~~ 220 (285)
T KOG4210|consen 167 RRGLRPKNK------------------------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSG--EITSVRLPTD 220 (285)
T ss_pred cccccccch------------------------hcccccCccccceeecccccccchHHHhhhccCcC--cceeeccCCC
Confidence 222000000 00001112223455999999999999999999999 8888888765
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
+|+++|.|.+...+..++.. ... .++++++++.+.+..
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTR---SIGGRPLRLEEDEPR 264 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccC---cccCcccccccCCCC
Confidence 79999999999999999887 677 899999999998754
No 134
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.73 E-value=1.4e-08 Score=92.14 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=131.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEee----cCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~----~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
..++++++++...+.+.+...++..+|.+....+.. ..++|++++.|...+.+..|+.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 457799999999999999999999999766555544 2356899999999999999986544345555544443332
Q ss_pred ccC--------CccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 014230 131 ASG--------QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (428)
Q Consensus 131 ~~~--------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 202 (428)
... ...........+|++++..+++++|+..|..+|.|..+++..++.++.++||++|.|.....+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 221 111222333444999999999999999999999999999999999999999999999999999999986
Q ss_pred hCCceeCCeeEEEEEccCCC
Q 014230 203 LTGKWLGSRQIRCNWATKGA 222 (428)
Q Consensus 203 l~~~~~~g~~i~v~~~~~~~ 222 (428)
....+.++++.+.+..+..
T Consensus 247 -~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred -ccCcccCcccccccCCCCc
Confidence 7888999999998876653
No 135
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.72 E-value=6.4e-08 Score=93.80 Aligned_cols=83 Identities=30% Similarity=0.531 Sum_probs=73.8
Q ss_pred CCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeC---------CccEEEEEeCCHHHHHHHHHHhcCCC
Q 014230 254 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---------DKGFGFVRYSTHAEAALAIQMGNTTQ 324 (428)
Q Consensus 254 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~---------~~g~afV~f~~~~~A~~A~~~l~g~~ 324 (428)
......|..++|||+||++.++++.|...|..|| .|..++|+- ++.|+||.|-+..+|.+|++.|+|.
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfg--PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~- 242 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFG--PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI- 242 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccC--cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce-
Confidence 3444566778999999999999999999999999 888888872 2689999999999999999999999
Q ss_pred cccccCeeEEEeeCCCC
Q 014230 325 SSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 325 ~~~~~g~~l~v~~a~~~ 341 (428)
.+.+..+++.|++.-
T Consensus 243 --iv~~~e~K~gWgk~V 257 (877)
T KOG0151|consen 243 --IVMEYEMKLGWGKAV 257 (877)
T ss_pred --eeeeeeeeecccccc
Confidence 999999999999753
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.71 E-value=3.7e-08 Score=92.97 Aligned_cols=81 Identities=26% Similarity=0.346 Sum_probs=75.4
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
..++|||++|...+...+|+.+|++||.|...+|+.+..+.-.+.|+||++.+.++|.+||..|+...+.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45789999999999999999999999999999999887777789999999999999999999999999999999999775
Q ss_pred C
Q 014230 220 K 220 (428)
Q Consensus 220 ~ 220 (428)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 137
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=2.2e-08 Score=99.49 Aligned_cols=160 Identities=19% Similarity=0.350 Sum_probs=134.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
+...+++|+++||+..+++.+|+..|..+|.|.+|.|-..+ ...|+||.|.+...+-.|...+.+..|....+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 55667899999999999999999999999999998886553 235999999999999999988988888777777766
Q ss_pred ccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014230 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (428)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 208 (428)
... ....++.+++++|..-+....|...|..||.|..|.+- +..-|++|.|.+...+..|+..+.|..+
T Consensus 448 G~~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 448 GQP-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ccc-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcC
Confidence 543 34556789999999999999999999999999887654 3345899999999999999999999998
Q ss_pred CC--eeEEEEEccCCC
Q 014230 209 GS--RQIRCNWATKGA 222 (428)
Q Consensus 209 ~g--~~i~v~~~~~~~ 222 (428)
++ +.++|.|+....
T Consensus 517 G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 517 GGPPRRLRVDLASPPG 532 (975)
T ss_pred CCCCcccccccccCCC
Confidence 64 668888876543
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.67 E-value=1.5e-07 Score=70.17 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=68.9
Q ss_pred ceeEecCCCcccCHHHHHHHhccC--CCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC----CeeEEE
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVY--PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG----SRQIRC 215 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~--g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~----g~~i~v 215 (428)
++|.|+|||...+.++|.+++... |...-+.+..|..++.+.|||||.|.+.+.|.+..+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988653 77888889999899999999999999999999999999999874 556667
Q ss_pred EEccC
Q 014230 216 NWATK 220 (428)
Q Consensus 216 ~~~~~ 220 (428)
.|++-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77654
No 139
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=9.5e-08 Score=79.33 Aligned_cols=73 Identities=23% Similarity=0.491 Sum_probs=66.4
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
..++|..+|..+.+.+|..+|.+|| +.+..+++.|+ +|||||+|++.+.|.-|-+.||++ .+.++.|.|.
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~-g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY---Ll~e~lL~c~ 125 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFG-GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY---LLMEHLLECH 125 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcC-CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh---hhhhheeeeE
Confidence 5689999999999999999999995 38888888665 799999999999999999999999 8999999999
Q ss_pred eCC
Q 014230 337 WGS 339 (428)
Q Consensus 337 ~a~ 339 (428)
+-.
T Consensus 126 vmp 128 (214)
T KOG4208|consen 126 VMP 128 (214)
T ss_pred EeC
Confidence 844
No 140
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.63 E-value=2.5e-07 Score=87.54 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=69.8
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
...++|||.+|...+...||+.+|++|| .|.-.++..+ +.|+||++.+.++|.+||+.||.. +|.|+-|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyG--KVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrT---ELHGrmI 477 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYG--KVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRT---ELHGRMI 477 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhc--ceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhh---hhcceee
Confidence 4457899999999999999999999999 7877777755 789999999999999999999999 9999999
Q ss_pred EEeeCCCC
Q 014230 334 KCSWGSKP 341 (428)
Q Consensus 334 ~v~~a~~~ 341 (428)
.|.-+++.
T Consensus 478 SVEkaKNE 485 (940)
T KOG4661|consen 478 SVEKAKNE 485 (940)
T ss_pred eeeecccC
Confidence 99988764
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.61 E-value=1.5e-07 Score=82.28 Aligned_cols=85 Identities=26% Similarity=0.363 Sum_probs=76.2
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
+....+|+|.|||..++++||+++|..||.+..+.+-++ ..|.+.|.|-|.|...++|.+|++.+++..++|+.+++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 444478999999999999999999999999999988888 5789999999999999999999999999999999999987
Q ss_pred ccCCCC
Q 014230 218 ATKGAG 223 (428)
Q Consensus 218 ~~~~~~ 223 (428)
......
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 655443
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.59 E-value=4e-07 Score=64.25 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=49.6
Q ss_pred eeEEEcCCCcccCHH----HHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeC
Q 014230 263 TTVYVGNLAPEVTQL----DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~----~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (428)
+.|+|.|||.+.+.. .|+.++..+| +.|.+|. .+.|+|.|.+.+.|.+|.+.|+|. .+.|++|.|+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG-GkVl~v~----~~tAilrF~~~~~A~RA~KRmegE---dVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG-GKVLSVS----GGTAILRFPNQEFAERAQKRMEGE---DVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------TT-EEEEESSHHHHHHHHHHHTT-----SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC-CEEEEEe----CCEEEEEeCCHHHHHHHHHhhccc---ccccceEEEEEc
Confidence 569999999988765 4667788998 5777773 589999999999999999999999 899999999997
Q ss_pred CC
Q 014230 339 SK 340 (428)
Q Consensus 339 ~~ 340 (428)
..
T Consensus 75 ~~ 76 (90)
T PF11608_consen 75 PK 76 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 143
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.52 E-value=3.8e-08 Score=89.69 Aligned_cols=154 Identities=24% Similarity=0.381 Sum_probs=123.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCc-ccCceeeeecccccCCcc
Q 014230 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRH-LFGQPIKVNWAYASGQRE 136 (428)
Q Consensus 58 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~l~v~~~~~~~~~~ 136 (428)
.+|++||.+.++..||..+|...-.-.+-.++. ..||+||.+.+...|.+|++.++++. +.|+++.+.++.++..+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS 80 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh
Confidence 589999999999999999997542111111111 23799999999999999999999965 889999999887765443
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
+.+-|.|+|+...++-|..+...||.++.+... .+..-.-..-|+|...+.+..|+..++|..+.+..+++.
T Consensus 81 -----rk~Qirnippql~wevld~Ll~qyg~ve~~eqv---nt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 81 -----RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQV---NTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred -----hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhh---ccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 468899999999999999999999999998764 222222335578999999999999999999999999998
Q ss_pred EccCC
Q 014230 217 WATKG 221 (428)
Q Consensus 217 ~~~~~ 221 (428)
|-...
T Consensus 153 YiPde 157 (584)
T KOG2193|consen 153 YIPDE 157 (584)
T ss_pred cCchh
Confidence 86553
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.52 E-value=3.4e-07 Score=88.87 Aligned_cols=77 Identities=26% Similarity=0.554 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC-------CceEEEEEccHHHHHHHHHHhCCCcccCceeee
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~-------~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (428)
...+.|||+||++.++++.|...|..||+|.+|+++..++ ..|+||-|-+..+|++|++.|+|..+.+.++++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 3445699999999999999999999999999999998653 469999999999999999999999999999999
Q ss_pred eccc
Q 014230 127 NWAY 130 (428)
Q Consensus 127 ~~~~ 130 (428)
.|.+
T Consensus 252 gWgk 255 (877)
T KOG0151|consen 252 GWGK 255 (877)
T ss_pred cccc
Confidence 9984
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.51 E-value=7.3e-07 Score=66.47 Aligned_cols=78 Identities=21% Similarity=0.173 Sum_probs=61.8
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCccccc-CeeEEE
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKC 335 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v 335 (428)
+||.|+|||...|.++|.+++...-.+....+.++-| .|||||.|.+++.|.+-.+.++|+.|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999999999999887643335555555443 799999999999999999999999554443 466788
Q ss_pred eeCCC
Q 014230 336 SWGSK 340 (428)
Q Consensus 336 ~~a~~ 340 (428)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88763
No 146
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.48 E-value=5.6e-07 Score=78.68 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
+...+|+|.|||+.++++||+++|..||.+..+.+..++. .|+|-|.|...++|..|++.+++..+.|+.+++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3346699999999999999999999999999888888764 5899999999999999999999999999999988664
Q ss_pred ccC
Q 014230 131 ASG 133 (428)
Q Consensus 131 ~~~ 133 (428)
...
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 443
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.42 E-value=4.3e-07 Score=79.68 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=77.7
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+...+||+|+...++.+++...|+.||.|..+.+..|+..+.++||+||+|.+.+.++.++. |++..+.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34566799999999999999999999999999999999999888999999999999999999998 99999999999998
Q ss_pred EccCC
Q 014230 217 WATKG 221 (428)
Q Consensus 217 ~~~~~ 221 (428)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87654
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.38 E-value=1.2e-06 Score=83.04 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=65.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEee----cCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~----~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
.....+|||+|||.++++++|.++|..||+|+...|.. +++.+||||+|.+.+++..|+++ +...+.++++.|+-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34455699999999999999999999999999877755 33347999999999999999975 47778899999975
Q ss_pred ccc
Q 014230 129 AYA 131 (428)
Q Consensus 129 ~~~ 131 (428)
...
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 433
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.36 E-value=8.6e-07 Score=83.95 Aligned_cols=79 Identities=28% Similarity=0.476 Sum_probs=68.3
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
.+|||.|||.+++.++|+++|..||.|+...|......++..+|+||+|.+.+++..||.+ +...++++.+.|+-....
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999988876543455559999999999999999985 678899999999876553
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.25 E-value=9.8e-08 Score=87.07 Aligned_cols=149 Identities=23% Similarity=0.331 Sum_probs=118.4
Q ss_pred ceeEecCCCcccCHHHHHHHhccCC-CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-eeCCeeEEEEEcc
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWAT 219 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~-~~~g~~i~v~~~~ 219 (428)
+.+|++||.+..+.++|..+|...- ....-.++ -.||+||.+.+...|.+|++.++++ .+.|..+.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4789999999999999999997641 11111122 2469999999999999999999986 5789999988776
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeC-
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR- 298 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~- 298 (428)
++.... +.+-|.|+|+..-++.|..++..|| .+..|....
T Consensus 75 ~kkqrs-------------------------------------rk~Qirnippql~wevld~Ll~qyg--~ve~~eqvnt 115 (584)
T KOG2193|consen 75 PKKQRS-------------------------------------RKIQIRNIPPQLQWEVLDSLLAQYG--TVENCEQVNT 115 (584)
T ss_pred hHHHHh-------------------------------------hhhhHhcCCHHHHHHHHHHHHhccC--CHhHhhhhcc
Confidence 543221 5689999999999999999999999 777765543
Q ss_pred C--ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 299 D--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 299 ~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
+ .-..=|+|.+.+.+..|+..++|. .+.+..++|.|--
T Consensus 116 ~~etavvnvty~~~~~~~~ai~kl~g~---Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 116 DSETAVVNVTYSAQQQHRQAIHKLNGP---QLENQHLKVGYIP 155 (584)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcch---HhhhhhhhcccCc
Confidence 2 223347889999999999999999 9999999999853
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.21 E-value=7.2e-06 Score=58.02 Aligned_cols=70 Identities=19% Similarity=0.337 Sum_probs=47.4
Q ss_pred eEEEcCCCCCCCHHHH----HHHHhccC-CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 58 SVYVGNIHTQVTEPLL----QEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 58 ~l~v~nLp~~~t~~~l----~~~f~~~G-~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
.|+|.|||.+.+...| +.++..+| .|.+|. .+.|.|.|.+.+.|.+|.+.++|....|.+|.|.|....
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 5999999999887664 55666776 565552 257999999999999999999999999999999998544
Q ss_pred C
Q 014230 133 G 133 (428)
Q Consensus 133 ~ 133 (428)
.
T Consensus 78 r 78 (90)
T PF11608_consen 78 R 78 (90)
T ss_dssp -
T ss_pred c
Confidence 3
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.13 E-value=1.7e-06 Score=78.39 Aligned_cols=146 Identities=17% Similarity=0.124 Sum_probs=112.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC-------CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-------KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 58 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~-------~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
.|.|.||.+.+|.+.+..+|...|.|.+++++... ....|||.|.|...+..|- .|.+.+|-++.|.|....
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecC
Confidence 69999999999999999999999999999998742 2368999999999988885 577777777776665432
Q ss_pred ccCCc--------------------------------cC---------------------CCCcceeEecCCCcccCHHH
Q 014230 131 ASGQR--------------------------------ED---------------------TSGHFNIFVGDLSPEVTDAT 157 (428)
Q Consensus 131 ~~~~~--------------------------------~~---------------------~~~~~~l~v~~lp~~~~~~~ 157 (428)
..... .+ +.-.++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 11000 00 01136799999999999999
Q ss_pred HHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 158 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 158 l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
+.++|..+|.|...++- .+...-+|-|+|........|+. .+|..+.
T Consensus 168 ~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999999776653 34455578899998888888887 5776654
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.11 E-value=7.8e-06 Score=62.59 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=45.9
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCC--CcccccCeeEEEe
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT--QSSYLFGKQMKCS 336 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~~~~g~~l~v~ 336 (428)
+.|+|.+++..++.++|++.|+.|| .|..|.+.+....|+|.|.+.++|..|+..+... ....+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g--~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG--EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC--CcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5799999999999999999999999 9999999999899999999999999999877533 0114555555443
No 154
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.01 E-value=1e-05 Score=71.04 Aligned_cols=74 Identities=28% Similarity=0.406 Sum_probs=66.1
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
...+||+|+.+.+|.+++...|+.|| .+..+.+..+ |||+||+|.+.+....++. |++. .|.++.+.|
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg--~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs---~i~~~~i~v 174 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCG--GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGS---EIPGPAIEV 174 (231)
T ss_pred CceEEEeccccccccchhhheeeccC--CccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCc---cccccccee
Confidence 36799999999999999999999999 7776666654 7899999999999999999 9999 899999999
Q ss_pred eeCCCC
Q 014230 336 SWGSKP 341 (428)
Q Consensus 336 ~~a~~~ 341 (428)
.+.+-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 987765
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.00 E-value=7.8e-06 Score=74.29 Aligned_cols=177 Identities=14% Similarity=0.085 Sum_probs=112.0
Q ss_pred eeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
.|.|.||.+.++.+.+..+|...|.|..+.++....+ ......|||.|.+...+..|.. |.+..|-++.|.|....
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 7889999999999999999999999999988753211 2345579999999999888875 77777777777775433
Q ss_pred CCCCCCCCc------CCcc--cccchhccCCC----CCCCcccCCCCCCC---------CCCCceeEEEcCCCcccCHHH
Q 014230 220 KGAGNNEDK------QSSD--AKSVVELTNGS----SEDGKETTNTEAPE---------NNPQYTTVYVGNLAPEVTQLD 278 (428)
Q Consensus 220 ~~~~~~~~~------~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~---------~~~~~~~l~V~nLp~~~t~~~ 278 (428)
......... .... ..+..+...+. ..+..+...-..|. ...-.++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 222111100 0000 00000000000 00000000000000 011126899999999999999
Q ss_pred HHHHHhccCCeeEEEEEEeC--CccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 279 LHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 279 L~~~F~~~G~~~i~~i~i~~--~~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
+.+.|..+| ++...++-. +..+|-|+|........|+. ++|.
T Consensus 168 ~~e~f~r~G--ev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gr 211 (479)
T KOG4676|consen 168 SGESFERKG--EVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGR 211 (479)
T ss_pred hhhhhhhcc--hhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcch
Confidence 999999999 666665543 35677799998888888876 4555
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.84 E-value=4.5e-05 Score=50.32 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=45.1
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHH
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~ 317 (428)
+.|-|.+.+.+..+ ++..+|..|| +|.++.+...+.+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fG--eI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFG--EIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcC--CEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 57889999987764 4555899999 9999999988899999999999999985
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.76 E-value=5.4e-05 Score=57.96 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=39.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCC
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR 117 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 117 (428)
+.|.|.+++.+++.++|++.|+.||.|.-|.+..... .|+|.|.+.++|.+|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 4689999999999999999999999998888876554 7999999999999999876543
No 158
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=6.2e-05 Score=64.92 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=83.0
Q ss_pred HHHHHHHHhCCCcccCceeeeecccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccE
Q 014230 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185 (428)
Q Consensus 106 ~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~ 185 (428)
-|+.|-..|++....|+.+.|.|+.. . .|+|.||...++.+.+...|+.||+|....+..| ..+++.+-
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a---------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~e 74 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-A---------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTRE 74 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-c---------eEEEEecchhhhhHHHHHhhhhcCccchheeeec-cccccccc
Confidence 46677778899999999999999865 2 7999999999999999999999999998888777 56788889
Q ss_pred EEEEeCCHHHHHHHHHHhCCcee----CCeeEEEE
Q 014230 186 GFVSFRNQQDAQSAINDLTGKWL----GSRQIRCN 216 (428)
Q Consensus 186 afV~f~~~~~a~~a~~~l~~~~~----~g~~i~v~ 216 (428)
++|+|...-.+.+|...+...-+ .+++.-|.
T Consensus 75 g~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred chhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 99999999999999988743322 44544443
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.66 E-value=3.8e-05 Score=69.58 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=76.0
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
.....+|||-+||..+++.+|.++|..+|.|.. |.|.+|++|++.||-|.|.|.+...|..|+.-++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 344568999999999999999999999987743 677789999999999999999999999999999999999
Q ss_pred CeeEEEEEccCCC
Q 014230 210 SRQIRCNWATKGA 222 (428)
Q Consensus 210 g~~i~v~~~~~~~ 222 (428)
+.+|+|.++....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998876655
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.65 E-value=0.00012 Score=65.46 Aligned_cols=73 Identities=29% Similarity=0.514 Sum_probs=62.0
Q ss_pred eeEEEcCCCcccCHHH----H--HHHHhccCCeeEEEEEEeCC-------ccE--EEEEeCCHHHHHHHHHHhcCCCccc
Q 014230 263 TTVYVGNLAPEVTQLD----L--HRHFHSLGAGVIEEVRVQRD-------KGF--GFVRYSTHAEAALAIQMGNTTQSSY 327 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~----L--~~~F~~~G~~~i~~i~i~~~-------~g~--afV~f~~~~~A~~A~~~l~g~~~~~ 327 (428)
+-+||.+|++.+-.|+ | .++|.+|| .|..|.+-+. .+. .||+|.+.++|.+|+.+.+|. .
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyG--kI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs---~ 189 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYG--KIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS---L 189 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhcc--ceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc---c
Confidence 4589999999886665 3 37999999 9999988875 232 499999999999999999999 9
Q ss_pred ccCeeEEEeeCCC
Q 014230 328 LFGKQMKCSWGSK 340 (428)
Q Consensus 328 ~~g~~l~v~~a~~ 340 (428)
++||.|+..|+..
T Consensus 190 ~DGr~lkatYGTT 202 (480)
T COG5175 190 LDGRVLKATYGTT 202 (480)
T ss_pred ccCceEeeecCch
Confidence 9999999998754
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.55 E-value=0.00038 Score=62.30 Aligned_cols=80 Identities=18% Similarity=0.354 Sum_probs=62.5
Q ss_pred ceeEecCCCcccCHHHH------HHHhccCCCceEEEEeecCCC-CCccc--EEEEEeCCHHHHHHHHHHhCCceeCCee
Q 014230 142 FNIFVGDLSPEVTDATL------FACFSVYPSCSDARVMWDQKT-GRSRG--FGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l------~~~f~~~g~v~~~~i~~~~~~-~~~~g--~afV~f~~~~~a~~a~~~l~~~~~~g~~ 212 (428)
+-+||-+||+.+-.+++ .++|..||.|..|.|-+...+ +...+ -.||+|.+.++|.+||.+.+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 56899999998776663 378999999998877644211 11111 1599999999999999999999999999
Q ss_pred EEEEEccCC
Q 014230 213 IRCNWATKG 221 (428)
Q Consensus 213 i~v~~~~~~ 221 (428)
|+..|...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999987653
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.47 E-value=0.00015 Score=66.95 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=56.1
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-------------------ccEEEEEeCCHHHHHHHHH
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-------------------KGFGFVRYSTHAEAALAIQ 318 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-------------------~g~afV~f~~~~~A~~A~~ 318 (428)
..-+.++|.+.|||.+-.-+.|.++|+.+| .|..|+|.+. +-||+|+|++.+.|.+|.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G--~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVG--SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhccc--ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 334568999999999998999999999999 9999999864 4689999999999999999
Q ss_pred HhcCC
Q 014230 319 MGNTT 323 (428)
Q Consensus 319 ~l~g~ 323 (428)
.|+..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 88654
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.45 E-value=0.00029 Score=46.50 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHH
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAI 111 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~ 111 (428)
+.|-|.+.+.+.. ++|...|..||+|..+.+. ....+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 4688999998775 4455588889999987775 33458999999999999985
No 164
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.36 E-value=0.0005 Score=60.42 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=53.9
Q ss_pred HHHHHHHhccCCCceEEEEeecCCCCCcc-cEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 155 DATLFACFSVYPSCSDARVMWDQKTGRSR-GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 155 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~~-g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
++++++.+++||.|..|.|+.++...... --.||+|...++|.+|+-.|||..|+||.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 56889999999999999988765332222 238999999999999999999999999999987753
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.34 E-value=0.00053 Score=59.33 Aligned_cols=83 Identities=25% Similarity=0.357 Sum_probs=69.8
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCccc
Q 014230 195 DAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV 274 (428)
Q Consensus 195 ~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~ 274 (428)
-|..|...|++....|+.++|.|+.. ..|+|.||...+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------------a~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------------AELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------------------------ceEEEEecchhh
Confidence 46667778999999999999999876 359999999999
Q ss_pred CHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhc
Q 014230 275 TQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321 (428)
Q Consensus 275 t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~ 321 (428)
+.+.|.+.|+.|| .|....+.-| .+-++|.|...-.|.+|+...+
T Consensus 44 sndll~~~f~~fg--~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 44 SNDLLEQAFRRFG--PIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhHHHHHhhhhcC--ccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 9999999999999 5555444332 5789999999999999998774
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.33 E-value=0.00092 Score=61.98 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=62.1
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeec---CCCC--C--------cccEEEEEeCCHHHHHHHHHHh
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD---QKTG--R--------SRGFGFVSFRNQQDAQSAINDL 203 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~---~~~~--~--------~~g~afV~f~~~~~a~~a~~~l 203 (428)
++-+.++|.+-|||.+-.-+.|.++|..+|.|..|+|... +.+. . .+-+|+|+|...+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457789999999999999999999999999999999865 3222 1 2457999999999999999977
Q ss_pred CCceeCCeeEEEE
Q 014230 204 TGKWLGSRQIRCN 216 (428)
Q Consensus 204 ~~~~~~g~~i~v~ 216 (428)
+...-+-..++|.
T Consensus 307 ~~e~~wr~glkvk 319 (484)
T KOG1855|consen 307 NPEQNWRMGLKVK 319 (484)
T ss_pred chhhhhhhcchhh
Confidence 6544433334443
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.27 E-value=0.00014 Score=62.65 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=60.9
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCC--------CCccc----EEEEEeCCHHHHHHHHHHhCCce
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT--------GRSRG----FGFVSFRNQQDAQSAINDLTGKW 207 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~--------~~~~g----~afV~f~~~~~a~~a~~~l~~~~ 207 (428)
....||+++||+..+..-|+++|+.||.|-+|.+-....+ +.+++ -++|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999988654333 22222 37999999999999999999999
Q ss_pred eCCee
Q 014230 208 LGSRQ 212 (428)
Q Consensus 208 ~~g~~ 212 (428)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98875
No 168
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.24 E-value=0.00028 Score=67.91 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=71.8
Q ss_pred CCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 254 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 254 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
..+......+.|+|.||-.-+|.-.|+.++..-| +.|.+.-|.+=|..|||.|.+.++|.....+|||..|..-+.+.|
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtg-g~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTG-GNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhcc-CchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3444666778999999999999999999999665 266666333448899999999999999999999998877888999
Q ss_pred EEeeCCC
Q 014230 334 KCSWGSK 340 (428)
Q Consensus 334 ~v~~a~~ 340 (428)
.+.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999763
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.19 E-value=0.0018 Score=48.77 Aligned_cols=70 Identities=27% Similarity=0.280 Sum_probs=51.6
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEE-------------EeCCccEEEEEeCCHHHHHHHHHHhcCCCccccc
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR-------------VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~-------------i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 329 (428)
+.|.|-+.|+. ....|.+.|++|| .|.+.. +.....+..|+|+++.+|.+|+.+ ||. .++
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G--~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~---i~~ 79 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFG--TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGT---IFS 79 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS---EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTE---EET
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcc--eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCe---EEc
Confidence 56888899998 5677889999999 777775 555678999999999999999975 888 787
Q ss_pred CeeE-EEeeCC
Q 014230 330 GKQM-KCSWGS 339 (428)
Q Consensus 330 g~~l-~v~~a~ 339 (428)
|.-| -|.+.+
T Consensus 80 g~~mvGV~~~~ 90 (100)
T PF05172_consen 80 GSLMVGVKPCD 90 (100)
T ss_dssp TCEEEEEEE-H
T ss_pred CcEEEEEEEcH
Confidence 7544 466653
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.11 E-value=0.00031 Score=60.66 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=57.8
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCc------------------cEEEEEeCCHHHHHHHHHHhcCCC
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------------------GFGFVRYSTHAEAALAIQMGNTTQ 324 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~------------------g~afV~f~~~~~A~~A~~~l~g~~ 324 (428)
-.||+++||+..+-..|+++|+.|| .|-+|.+-+.. .-|.|+|.+...|.++...||+.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yG--eVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~- 151 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYG--EVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT- 151 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhcc--ccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC-
Confidence 4799999999999999999999999 99999987641 13779999999999999999999
Q ss_pred cccccCee
Q 014230 325 SSYLFGKQ 332 (428)
Q Consensus 325 ~~~~~g~~ 332 (428)
.|+|++
T Consensus 152 --~Iggkk 157 (278)
T KOG3152|consen 152 --PIGGKK 157 (278)
T ss_pred --ccCCCC
Confidence 799875
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0018 Score=62.09 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=61.5
Q ss_pred CcceeEecCCCcc--cCH----HHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-CCee
Q 014230 140 GHFNIFVGDLSPE--VTD----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQ 212 (428)
Q Consensus 140 ~~~~l~v~~lp~~--~~~----~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~-~g~~ 212 (428)
-...|+|.|+|-- ... .-|..+|+++|.+....+..+.+ |.++||.|++|.+..+|..|++.|||..+ .+++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3468899998863 222 34567899999999999988855 45999999999999999999999999988 4677
Q ss_pred EEEE
Q 014230 213 IRCN 216 (428)
Q Consensus 213 i~v~ 216 (428)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 7765
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.05 E-value=0.00038 Score=60.35 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=50.1
Q ss_pred HHHHHHHh-ccCCceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 71 PLLQEVFS-STGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 71 ~~l~~~f~-~~G~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
+||...|+ +||.|+++++.... -.|-++|.|...++|++|+..||+..|.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 89999999876653 35789999999999999999999999999999998763
No 173
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.01 E-value=0.0018 Score=57.10 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=52.8
Q ss_pred HHHHHHHHhccCCceeEEEeecCC-----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 70 EPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 70 ~~~l~~~f~~~G~v~~i~~~~~~~-----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
++++.+-+++||.|..|.|+...+ .--.||+|...++|.+|+-.|||..|.|+.++..|.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 466788999999999998887653 2358999999999999999999999999999998764
No 174
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.99 E-value=0.0017 Score=59.15 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCcee--------EEEeecC----CCceEEEEEccHHHHHHHHHHhCCCccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (428)
.+...+|||-+||..+++.+|..+|..+|.|.. |++.+++ .++-|.|.|.|...|+.|+.-+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455677999999999999999999999987753 4444444 3578999999999999999999999999
Q ss_pred CceeeeecccccC
Q 014230 121 GQPIKVNWAYASG 133 (428)
Q Consensus 121 g~~l~v~~~~~~~ 133 (428)
|..|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998875544
No 175
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.98 E-value=0.0008 Score=60.57 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=65.9
Q ss_pred cceeEecCCCcccCHHHHHHHhccCC--CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
..++||+||-+-+|++||.+.+...| .+.+++++.++.+|.+||||+|...+..+.++-++.|-.+.+.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 46899999999999999999887765 56788888888899999999999999999999999888888887665553
No 176
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.96 E-value=0.0034 Score=59.10 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=63.0
Q ss_pred ceeEEEcCCCccc-CHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 262 YTTVYVGNLAPEV-TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 262 ~~~l~V~nLp~~~-t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
.+.|-+.-.|+.. +-++|...|.+|| .|..|.+.-+.-.|.|+|.+..+|-+|.. .++. .|+++.|+|.|-+.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG--~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~a---vlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFG--EIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGA---VLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcC--ccccccccCchhhheeeeeccccccchhc-cccc---eecCceeEEEEecC
Confidence 3567777778776 6688999999999 99999988776789999999999988865 5677 89999999999886
Q ss_pred CC
Q 014230 341 PT 342 (428)
Q Consensus 341 ~~ 342 (428)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 44
No 177
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.94 E-value=0.003 Score=47.58 Aligned_cols=72 Identities=21% Similarity=0.108 Sum_probs=50.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEe-----------ecCCCceEEEEEccHHHHHHHHHHhCCCcccCce-e
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI-----------RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP-I 124 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~-----------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-l 124 (428)
+.|.|-+.|+. ....|.+.|++||.|.+..-. ......+..|+|.++.+|.+||. .||..|.|.- +
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 45889999988 567888999999999887510 11233599999999999999995 6999998754 4
Q ss_pred eeeccc
Q 014230 125 KVNWAY 130 (428)
Q Consensus 125 ~v~~~~ 130 (428)
-|.+.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 455553
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.85 E-value=0.0034 Score=44.72 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=41.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCC
Q 014230 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG 116 (428)
Q Consensus 59 l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 116 (428)
||--..|..+...||.++|++||.| .|..+.+. -|||...+.+.|..++..++.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 4444499999999999999999998 56666665 499999999999999887754
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.84 E-value=0.00062 Score=59.04 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=51.1
Q ss_pred HHHHHHHh-ccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 277 LDLHRHFH-SLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 277 ~~L~~~F~-~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
+++...|+ +|| +|+.+.+-.+ +|-++|.|...++|.+|++.||+. ++.|++|.+.+..-.
T Consensus 83 Ed~f~E~~~kyg--Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnR---w~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYG--EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNR---WYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhh--hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCc---cccCCcceeeecCcC
Confidence 45555555 899 8988877765 789999999999999999999999 999999999886543
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.82 E-value=0.0075 Score=40.76 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=44.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc----CCceeEEEeecCCCceEEEEEccHHHHHHHHHHh
Q 014230 58 SVYVGNIHTQVTEPLLQEVFSST----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (428)
Q Consensus 58 ~l~v~nLp~~~t~~~l~~~f~~~----G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l 114 (428)
+|+|+|+. +++.+||+.+|..| + ...|..+.|.+ |=|.|.+.+.|.+|+..|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 59999984 58899999999999 4 44788888875 899999999999999754
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.69 E-value=0.0091 Score=47.84 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=45.8
Q ss_pred HHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCC
Q 014230 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (428)
Q Consensus 156 ~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 222 (428)
.+|.+.|..||.+.-+++.-+ .-+|+|.+-++|-+|+. ++|..+.|+.|+|+...+.-
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 377788999999988877743 38999999999999997 89999999999999876643
No 182
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0045 Score=59.57 Aligned_cols=70 Identities=23% Similarity=0.244 Sum_probs=56.8
Q ss_pred eeEEEcCCCcc--cC----HHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCccccc-C
Q 014230 263 TTVYVGNLAPE--VT----QLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF-G 330 (428)
Q Consensus 263 ~~l~V~nLp~~--~t----~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g 330 (428)
++|+|.|+|-- .. ..-|..+|+++| .+....++.+ +|+.|++|++..+|..|++.|||+ .|+ +
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g--k~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~---~ldkn 133 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAG--KIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK---RLDKN 133 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhc--cccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc---eeccc
Confidence 68999999862 22 234567899999 8999888854 799999999999999999999999 665 5
Q ss_pred eeEEEee
Q 014230 331 KQMKCSW 337 (428)
Q Consensus 331 ~~l~v~~ 337 (428)
++..|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 6677653
No 183
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.51 E-value=0.0078 Score=57.84 Aligned_cols=72 Identities=8% Similarity=0.127 Sum_probs=57.6
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
|.|.|+.||..+-.|+++.+|+.-.|-.+.+|.+.-+.+ .||+|++..||..|.+.|... ...|-|++|.-+
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylree-vk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREE-VKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHH-HHhhcCcchhhh
Confidence 678889999999999999999975555889998887644 699999999999999877542 125777776543
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.46 E-value=0.019 Score=45.36 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=56.9
Q ss_pred CCCCCCeEEEcCCCCCCC-HHHH---HHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVT-EPLL---QEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t-~~~l---~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
...+..||.|+=|...+. .+|+ ...++.||+|.+|..+-.. .|.|.|.|..+|.+|+.++.. ...|..+.+.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 355677899988877764 3444 4556789999998775544 499999999999999998865 6677888877
Q ss_pred cc
Q 014230 128 WA 129 (428)
Q Consensus 128 ~~ 129 (428)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 74
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.44 E-value=0.01 Score=47.54 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=45.4
Q ss_pred HHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 71 PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 71 ~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
.+|.+.|..||.+.-|+++-+ .-+|+|.+.++|.+|+ .++|..+.|+.|+|....+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 367788889999888877665 4899999999999998 58999999999999876554
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.24 E-value=0.0072 Score=58.58 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=62.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhc-cCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcc---cCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSS-TGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL---FGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v~ 127 (428)
....+..|+|.||-...|...|+.++.. .|.|.+. ..|+-+..|||.|.+.++|......|||..+ +++.|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 3445567999999999999999999995 5577776 3355556899999999999999999999876 35788887
Q ss_pred cccc
Q 014230 128 WAYA 131 (428)
Q Consensus 128 ~~~~ 131 (428)
|...
T Consensus 518 f~~~ 521 (718)
T KOG2416|consen 518 FVRA 521 (718)
T ss_pred ecch
Confidence 7643
No 187
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.16 E-value=0.0082 Score=54.28 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=59.7
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
.-++||+||-+.+|++||.+.+...|-..+.++++..+ ||||+|...+..+..+.++.|-.+ .|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k---~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK---TIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc---eecCCCCee
Confidence 36899999999999999999999888556677777654 899999999999999999999888 888854433
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.00 E-value=0.044 Score=37.10 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=43.4
Q ss_pred eeEEEcCCCcccCHHHHHHHHhcc-CCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHh
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSL-GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 320 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~-G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l 320 (428)
..|+|.++.. ++.++|+.+|..| .......|....|.. |=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDTS-CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCCc-EEEEECCHHHHHHHHHcC
Confidence 5799999854 8889999999999 111355677776644 568899999999999764
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.82 E-value=0.053 Score=42.85 Aligned_cols=73 Identities=21% Similarity=0.350 Sum_probs=57.0
Q ss_pred CCCceeEEEcCCCccc-CHHH---HHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 259 NPQYTTVYVGNLAPEV-TQLD---LHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~-t~~~---L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
.++..||.|+=|..++ ..+| +...++.|| .|.+|... .+-.|.|.|+|..+|=.|+.+++.. .-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fG--pI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s~----~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFG--PIQSVTLC-GRQSAVVVFKDITSACKAVSAFQSR----APGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcC--Ccceeeec-CCceEEEEehhhHHHHHHHHhhcCC----CCCceEE
Confidence 4555788887666654 2344 445678899 88888765 4678999999999999999999886 8899999
Q ss_pred EeeC
Q 014230 335 CSWG 338 (428)
Q Consensus 335 v~~a 338 (428)
|+|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 9984
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.55 E-value=0.062 Score=38.43 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=39.5
Q ss_pred eEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcC
Q 014230 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT 322 (428)
Q Consensus 264 ~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g 322 (428)
.||--..|..+...||.++|+.||.+ .|..+.+ ..|||...+.+.|..++..+..
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I---~VsWi~d-TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI---YVSWIND-TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE---EEEEECT-TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE---EEEEEcC-CcEEEEeecHHHHHHHHHHhcc
Confidence 34444599999999999999999943 3444444 6799999999999999887753
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.45 E-value=0.036 Score=46.99 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=48.8
Q ss_pred CHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhc--CCCcccccCeeEEEeeCCCC
Q 014230 275 TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 275 t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~~~g~~l~v~~a~~~ 341 (428)
..+.|+++|..|+ .+.....+++=+-..|.|.+.++|.+|...|+ +. .+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~~--~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~---~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYD--PPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGT---SFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT---SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TS---EETTEE-EEE----S
T ss_pred hHHHHHHHHHhcC--CceEEEEcCCCCEEEEEeCCHHHHHHHHHHhccccc---ccCCCceEEEEcccc
Confidence 4578999999998 88899999987889999999999999999999 88 899999999998543
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.19 E-value=0.046 Score=52.78 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCCCcccCceeeeecccccCCccCCCCcceeEecCCCcccCHHHHHHHhcc--CCCceEEEEeecCCCCC
Q 014230 104 RRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV--YPSCSDARVMWDQKTGR 181 (428)
Q Consensus 104 ~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~--~g~v~~~~i~~~~~~~~ 181 (428)
.+-..++++..-+..+..+-.+|... ...+.|.++-||..+-+|+|+.+|+. +-.+.+|.+-.+ ++
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~---------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~n- 214 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPN---------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--DN- 214 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccC---------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--Cc-
Confidence 33344555555555555555555432 23367888999999999999999975 667788876543 22
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCC--ceeCCeeEEEEE
Q 014230 182 SRGFGFVSFRNQQDAQSAINDLTG--KWLGSRQIRCNW 217 (428)
Q Consensus 182 ~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~ 217 (428)
-||+|.+..||..|.+.|.. +.|-|+.|..++
T Consensus 215 ----WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 215 ----WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 89999999999999987754 456777665543
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.16 E-value=0.019 Score=48.53 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=45.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc-cCCc---eeEEEeecC------CCceEEEEEccHHHHHHHHHHhCCCcccC
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSS-TGPV---EGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v---~~i~~~~~~------~~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (428)
.....|.|++||+.+|++++.+.++. ++.. ..+.-..+. ...-|||.|.+.+++......++|..|..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34568999999999999999997776 5554 223211221 12469999999999999999999988754
No 194
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.99 E-value=1.6 Score=39.26 Aligned_cols=177 Identities=10% Similarity=0.139 Sum_probs=101.5
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecC-------CCCCcccEEEEEeCCHHHHHHHHH----HhCC
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-------KTGRSRGFGFVSFRNQQDAQSAIN----DLTG 205 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~-------~~~~~~g~afV~f~~~~~a~~a~~----~l~~ 205 (428)
+.-.+|.|...|+..+++-..+...|-+||+|++|.++.+. ...+......+-|-+.+.+-.... .|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999998664 112334568899999887765432 2322
Q ss_pred --ceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHH-HHH
Q 014230 206 --KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL-HRH 282 (428)
Q Consensus 206 --~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L-~~~ 282 (428)
..+....|.+.|..-+........ .......... .......-......+.|.|. +...+.++++ .+.
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~-~~~~~~~~~~--------~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~k 160 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPN-DEEADFSDYL--------VASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKK 160 (309)
T ss_pred HHHhcCCcceeEEEEEEecccccccc-ccccchhhHH--------hhhhhheeecCCcceEEEEE-ecCccchhHHHHHh
Confidence 235566677766543221111100 0000000000 00000000111223567664 3344434433 322
Q ss_pred H---hccC--CeeEEEEEEeCC--------ccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 283 F---HSLG--AGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 283 F---~~~G--~~~i~~i~i~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
+ ..-+ .-.+++|.+... +.||.++|-+..-|...+..+...
T Consensus 161 L~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 161 LPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred hhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 2 2111 126788887743 679999999999999999877643
No 195
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.97 E-value=0.58 Score=41.96 Aligned_cols=157 Identities=14% Similarity=0.222 Sum_probs=101.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC-----------CCceEEEEEccHHHHHHH----HH
Q 014230 48 PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----------KSSYGFIHYFDRRSAAMA----IL 112 (428)
Q Consensus 48 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~-----------~~g~afV~f~~~~~A~~a----~~ 112 (428)
|.+.+.-..|.|.+.|+..+++--++...|-+||+|++|-++.+. ......+.|-+.+.+... ++
T Consensus 7 PkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQ 86 (309)
T PF10567_consen 7 PKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQ 86 (309)
T ss_pred CCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHH
Confidence 445556667889999999999999999999999999999998865 124688999998876553 33
Q ss_pred HhCC--CcccCceeeeecccccCCc-----------------------cCCCCcceeEecCCCcccCHHHHHH-H---hc
Q 014230 113 SLNG--RHLFGQPIKVNWAYASGQR-----------------------EDTSGHFNIFVGDLSPEVTDATLFA-C---FS 163 (428)
Q Consensus 113 ~l~~--~~~~g~~l~v~~~~~~~~~-----------------------~~~~~~~~l~v~~lp~~~~~~~l~~-~---f~ 163 (428)
.|.. ..+....|.+.|..-+-.. .....+|.|.|. +...+.++++.+ . +.
T Consensus 87 rLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~ 165 (309)
T PF10567_consen 87 RLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLK 165 (309)
T ss_pred HHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhc
Confidence 3332 2356677777766421100 112345666663 233443333322 2 22
Q ss_pred cCC----CceEEEEeecCC--CCCcccEEEEEeCCHHHHHHHHHHhCC
Q 014230 164 VYP----SCSDARVMWDQK--TGRSRGFGFVSFRNQQDAQSAINDLTG 205 (428)
Q Consensus 164 ~~g----~v~~~~i~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~ 205 (428)
.-+ -+++|.++-... ..-++.||.+.|-+...|.+.++.+..
T Consensus 166 ~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 166 NSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred cCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 112 356666663222 223677999999999999999887753
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.85 E-value=0.27 Score=37.87 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=47.0
Q ss_pred eeEecCCCc-ccCHHHHHHHhccC-CCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 143 NIFVGDLSP-EVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 143 ~l~v~~lp~-~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
.+.+--.|+ -++-++|..+.+.+ ..|..++|++|.. .++-.+++.|.+.++|.+....+||+.+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 444444444 45556666665665 5677888887743 35666899999999999999999999874
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.70 E-value=0.014 Score=53.09 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=61.2
Q ss_pred ceeEecCCCcccCHHHHH---HHhccCCCceEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 142 FNIFVGDLSPEVTDATLF---ACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~---~~f~~~g~v~~~~i~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
+-+||-+|+.....+++. +.|..||.|..|.+..+.. .+.+- -++|+|...++|..||...+|...+|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 467888888776555443 5788899999998887652 11122 289999999999999999999999999988
Q ss_pred EEEccCC
Q 014230 215 CNWATKG 221 (428)
Q Consensus 215 v~~~~~~ 221 (428)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8776554
No 198
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.54 E-value=0.28 Score=34.86 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=41.5
Q ss_pred eEEEcCCC--cccCHHHHHHHHhccC---CeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeC
Q 014230 264 TVYVGNLA--PEVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (428)
Q Consensus 264 ~l~V~nLp--~~~t~~~L~~~F~~~G---~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (428)
+||| |+- ..++..+|..++...+ ...|-+|++..+ |+||+-.. +.|..+++.|++. .+.|++|+|..+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~~-~~a~~v~~~l~~~---~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVPE-EVAEKVLEALNGK---KIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE-T-T-HHHHHHHHTT-----SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEECH-HHHHHHHHHhcCC---CCCCeeEEEEEC
Confidence 4555 343 3588899998888664 346778888875 88998855 5888999999999 899999999753
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.29 E-value=0.76 Score=35.39 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=52.4
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
..+.+...|.-++.++|..+.+.+- ..|..+++.++ +-.+.+.|.+.++|..-...+||++--.+....-+|-|
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~-~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvvf 91 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFR-EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVF 91 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhccc-ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEE
Confidence 3445555566667777877777664 47888999987 44799999999999999999999933233333344433
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.17 E-value=0.02 Score=52.05 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=60.5
Q ss_pred eeEEEcCCCcccCHHHHH---HHHhccCCeeEEEEEEeCCc---------cEEEEEeCCHHHHHHHHHHhcCCCcccccC
Q 014230 263 TTVYVGNLAPEVTQLDLH---RHFHSLGAGVIEEVRVQRDK---------GFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~---~~F~~~G~~~i~~i~i~~~~---------g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 330 (428)
+-+||-+|+..+.++.+. +.|.+|| .|..|.+.++. .-++|+|...++|.+|+...+|. .++|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqyg--ki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~---~~dg 152 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYG--KINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF---VDDG 152 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccc--cceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH---Hhhh
Confidence 347888999887665544 5788998 88888888742 24899999999999999999999 8999
Q ss_pred eeEEEeeCCCC
Q 014230 331 KQMKCSWGSKP 341 (428)
Q Consensus 331 ~~l~v~~a~~~ 341 (428)
+.|+..++..+
T Consensus 153 ~~lka~~gttk 163 (327)
T KOG2068|consen 153 RALKASLGTTK 163 (327)
T ss_pred hhhHHhhCCCc
Confidence 99888887654
No 201
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.03 E-value=0.042 Score=54.33 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCC
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (428)
+.-+|||+|+-..+..+-++.+....|.|.+++... |+|..|....-..+|+..++...+.|..+.++.....-.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~~ 113 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQTIE 113 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhhhc
Confidence 445799999999999999999999999998776644 899999999999999999998889888777654211100
Q ss_pred c---------------cCCCCcceeEecCCCcccCHHHHHHHhccC
Q 014230 135 R---------------EDTSGHFNIFVGDLSPEVTDATLFACFSVY 165 (428)
Q Consensus 135 ~---------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~ 165 (428)
. ......+-.+|.++|....+......+.--
T Consensus 114 n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is 159 (668)
T KOG2253|consen 114 NADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQIS 159 (668)
T ss_pred CccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhcc
Confidence 0 001113456677777776665555555433
No 202
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.88 E-value=0.3 Score=33.64 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=42.8
Q ss_pred ccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 152 EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 152 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
.++-++++..++.|+-. +|+.| .+| -||.|.+.++|++|....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d-~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDD-RTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEec-CCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999998432 34444 344 799999999999999999999887776654
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.80 E-value=0.11 Score=43.98 Aligned_cols=80 Identities=14% Similarity=0.235 Sum_probs=50.0
Q ss_pred cceeEecCCCcccCHHHHHHHhcc-CCCc---eEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeC---C-
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSV-YPSC---SDARVMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGKWLG---S- 210 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~-~g~v---~~~~i~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g- 210 (428)
..+|.|++||+.+|++++.+.++. ++.. ..+.-...... ...-..|||.|.+.+++......++|..|. |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999998887 5555 22221111111 122335999999999999999999998762 2
Q ss_pred -eeEEEEEccC
Q 014230 211 -RQIRCNWATK 220 (428)
Q Consensus 211 -~~i~v~~~~~ 220 (428)
..-.|+++.-
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 2344566544
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.75 E-value=0.043 Score=55.68 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=62.9
Q ss_pred EEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 265 l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
..+.|.+-..+-.-|..+|+.|| .+.++..+|+-..|.|+|.+.+.|..|+.+++|++. ..-|-+.+|.|++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg--~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkev-s~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYG--SVASAWTLRDLNMALVSFSSVESAILALDALQGKEV-SVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhc--chhhheecccccchhhhhHHHHHHHHhhhhhcCCcc-cccCCceeEEeccc
Confidence 44555566778888999999999 999999999999999999999999999999999954 44577899999884
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.64 E-value=0.23 Score=42.12 Aligned_cols=62 Identities=23% Similarity=0.163 Sum_probs=46.0
Q ss_pred CHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeeEEEEEccCC
Q 014230 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQIRCNWATKG 221 (428)
Q Consensus 154 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~~~~ 221 (428)
..+.|+++|..|+.+..+..++ +-+-..|.|.+.++|.+|...|+ +..+.|..+++.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999999999998888773 33348999999999999999999 89999999999998543
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.60 E-value=0.28 Score=46.46 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccC-CceeEEEeecCC--CceEEEEEccHHHHHHHHHHhCCCcccC
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~i~~~~~~~--~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (428)
+.+++.|.|-.+|..+|..||..|+..+- .|..|++++|+. +-.+++.|.+.++|......+||+.|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 44478899999999999999999998765 688999999763 3458999999999999999999998864
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.31 E-value=0.29 Score=46.40 Aligned_cols=67 Identities=21% Similarity=0.329 Sum_probs=58.1
Q ss_pred cceeEecCCCcccCHHHHHHHhccC-CCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
.+.|+|-.+|..++-.||..++..+ -.|.++++++|.. .++=.+++.|.+.++|....+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 6789999999999999999999876 5789999998743 34445899999999999999999999874
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.95 E-value=0.55 Score=32.35 Aligned_cols=55 Identities=22% Similarity=0.433 Sum_probs=44.2
Q ss_pred ccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 273 EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 273 ~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
.++-++|+..+.+|+ -.+|...+ .|| ||.|.+.++|+++....+|. .+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-tGf-YIvF~~~~Ea~rC~~~~~~~---~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-TGF-YIVFNDSKEAERCFRAEDGT---LFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-CEE-EEEECChHHHHHHHHhcCCC---EEEEEEEEe
Confidence 578899999999996 45555443 354 89999999999999999999 787777654
No 209
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.85 E-value=0.067 Score=50.74 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=61.4
Q ss_pred CCeEEEcCCCCCC-CHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccC
Q 014230 56 CRSVYVGNIHTQV-TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (428)
Q Consensus 56 ~~~l~v~nLp~~~-t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (428)
.+.|-+.-.|... +-++|...|..||.|..|.+-... -.|.|+|.+..+|-+|. ...+..|.|+.|+|.|.++..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 4556677777765 468999999999999999886652 35999999999998876 468999999999999987654
No 210
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=92.65 E-value=0.17 Score=41.84 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=59.9
Q ss_pred eeEEEcCCCcccCH-----HHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCe-eEEEe
Q 014230 263 TTVYVGNLAPEVTQ-----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK-QMKCS 336 (428)
Q Consensus 263 ~~l~V~nLp~~~t~-----~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~-~l~v~ 336 (428)
+++++.+++..+.. .+.+.+|..|- +.....++++.+..-|.|.+.+.|..|...++.. .|.|+ .+++-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n--~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~---~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQIN--EDATFQLLRSFRRVRINFSNPEAAADARIKLHST---SFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhC--cchHHHHHHhhceeEEeccChhHHHHHHHHhhhc---ccCCCceEEEE
Confidence 56888888887532 33456777776 6666677777888899999999999999999999 89998 88888
Q ss_pred eCCCCCCC
Q 014230 337 WGSKPTPP 344 (428)
Q Consensus 337 ~a~~~~~~ 344 (428)
|+......
T Consensus 86 faQ~~~~~ 93 (193)
T KOG4019|consen 86 FAQPGHPE 93 (193)
T ss_pred EccCCCcc
Confidence 87654443
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=0.98 Score=44.31 Aligned_cols=131 Identities=11% Similarity=0.158 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcc----CCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 53 PSTCRSVYVGNIHTQ-VTEPLLQEVFSST----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
..++++|-|.|+.++ +.-.||..+|+.| |.|.+|.|.+.. |... .|....+.|.++.+-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe--------FGke--------RM~eEeV~GP~~el~ 234 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE--------FGKE--------RMKEEEVHGPPKELF 234 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh--------hhHH--------HhhhhcccCChhhhc
Confidence 455677999999986 7889999998865 478888886653 2222 122223334433332
Q ss_pred cccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014230 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (428)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 207 (428)
-......... ......++-.+.-++.|+ +..++. -||.|+|.+.+.|......|+|..
T Consensus 235 ~~~e~~~~s~-----------sD~ee~~~~~~~kLR~Yq-~~rLkY----------YyAVvecDsi~tA~~vYe~CDG~E 292 (650)
T KOG2318|consen 235 KPVEEYKESE-----------SDDEEEEDVDREKLRQYQ-LNRLKY----------YYAVVECDSIETAKAVYEECDGIE 292 (650)
T ss_pred cccccCcccc-----------cchhhhhhHHHHHHHHHH-hhhhee----------EEEEEEecCchHHHHHHHhcCcce
Confidence 1111110000 111111222344444442 222222 179999999999999999999999
Q ss_pred eC--CeeEEEEEccCC
Q 014230 208 LG--SRQIRCNWATKG 221 (428)
Q Consensus 208 ~~--g~~i~v~~~~~~ 221 (428)
+. +..+.++|....
T Consensus 293 fEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 293 FESSANKLDLRFIPDD 308 (650)
T ss_pred eccccceeeeeecCCC
Confidence 85 556666665443
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.18 E-value=0.19 Score=36.83 Aligned_cols=67 Identities=9% Similarity=0.023 Sum_probs=44.7
Q ss_pred EEEEEccHHHHHHHHHHhCC-CcccCceeeeecccccCC------ccCCCCcceeEecCCCcccCHHHHHHHhc
Q 014230 97 GFIHYFDRRSAAMAILSLNG-RHLFGQPIKVNWAYASGQ------REDTSGHFNIFVGDLSPEVTDATLFACFS 163 (428)
Q Consensus 97 afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~~~~~~------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~ 163 (428)
|+|+|.++.-|.+.++.-.- ..+.+..+.|.-..-... -....+.++|.|.|||....+++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999998864211 224555555543322111 12345668999999999999999987553
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.67 E-value=0.15 Score=50.62 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=63.0
Q ss_pred CCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 256 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 256 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
....++..++||+|+-..+..+-++.+...+| .|.++.... |+|+.|..+....+|+..++-. .++|..+.+
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g--~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~---~~~~~kl~~ 105 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSG--FVPSWKRDK---FGFCEFLKHIGDLRASRLLTEL---NIDDQKLIE 105 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCC--cchhhhhhh---hcccchhhHHHHHHHHHHhccc---CCCcchhhc
Confidence 34445567899999999999999999999999 555555444 9999999999999999999988 899988877
Q ss_pred eeC
Q 014230 336 SWG 338 (428)
Q Consensus 336 ~~a 338 (428)
.-.
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 653
No 214
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.57 E-value=0.78 Score=41.19 Aligned_cols=66 Identities=24% Similarity=0.220 Sum_probs=49.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCce-eeeec
Q 014230 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP-IKVNW 128 (428)
Q Consensus 59 l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-l~v~~ 128 (428)
|-|-++|+.. -..|..+|++||.|++...- .+..+-+|.|.+..+|.+||. .||..|.|.. |-|..
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 6677777654 36678899999999875554 444699999999999999995 5888887643 44443
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.50 E-value=0.4 Score=35.10 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=45.5
Q ss_pred EEEEeCCHHHHHHHHHHh-CCceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCcee
Q 014230 186 GFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264 (428)
Q Consensus 186 afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (428)
|+|+|.+..-|.+.++.- +...+++..+.|.-..-.......- ........++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~--------------------------qv~~~vs~rt 54 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF--------------------------QVFSGVSKRT 54 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE--------------------------EEEEcccCCE
Confidence 679999999999988632 1234567777665432211110000 0001223378
Q ss_pred EEEcCCCcccCHHHHHHHHh
Q 014230 265 VYVGNLAPEVTQLDLHRHFH 284 (428)
Q Consensus 265 l~V~nLp~~~t~~~L~~~F~ 284 (428)
|.|.|||...++++|++.++
T Consensus 55 Vlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 55 VLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EEEeCCCCCCChhhheeeEE
Confidence 99999999999999987654
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.38 E-value=0.2 Score=51.07 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=58.4
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcc--cCceeeeecccc
Q 014230 60 YVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL--FGQPIKVNWAYA 131 (428)
Q Consensus 60 ~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~~ 131 (428)
++.|.+-..+..-|..+|+.||.|.+.+..++-+ .|.|+|.+.++|..|++.+.|+.. -|.+.+|.+++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3445555667788999999999999999988875 699999999999999999999875 477888887754
No 217
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.10 E-value=0.65 Score=41.70 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=53.3
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCee-EEEee
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSW 337 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~-l~v~~ 337 (428)
..|-|.++|+.- -.-|..+|++|| .|.+....++-.+-+|.|.++.+|.+|+.. ||+ .|+|.. |-|+-
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG--~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~---ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCG--EVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGT---IIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhC--eeeeeecCCCCceEEEEecchhHHHHhhhh-cCe---eeccceEEeeee
Confidence 567777888864 346788999999 888888887777999999999999999985 777 677654 33444
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.14 E-value=1.6 Score=30.87 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHhccCC-----ceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 67 QVTEPLLQEVFSSTGP-----VEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 67 ~~t~~~l~~~f~~~G~-----v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
.++..+|..++...+. |-.|.+..+ |+||+-... .|..++..|++..+.|++++|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4677888888887654 444555433 899988766 588999999999999999998753
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=88.02 E-value=2.2 Score=38.05 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=43.7
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHH
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAE 312 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~ 312 (428)
...+.|+++||+.++.-.||+..+.+-|+ ...++...-..|-||++|.+...
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCC-CceeEeeecCCcceeEecCCccC
Confidence 34467999999999999999999999986 55677777778999999987643
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.69 E-value=2.5 Score=37.72 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=41.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHH
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRR 105 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~ 105 (428)
...-...|+++|||.++.-.||+..+.+-|.+ -..+.+....|-||+.|.+..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCcc
Confidence 33344569999999999999999999988765 345666667788999997754
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=83.72 E-value=0.7 Score=40.85 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=47.7
Q ss_pred eeEEEcCCCcc------------cCHHHHHHHHhccCCeeEEEEEEeCC----------------ccEE---------EE
Q 014230 263 TTVYVGNLAPE------------VTQLDLHRHFHSLGAGVIEEVRVQRD----------------KGFG---------FV 305 (428)
Q Consensus 263 ~~l~V~nLp~~------------~t~~~L~~~F~~~G~~~i~~i~i~~~----------------~g~a---------fV 305 (428)
.||++.+||-. -+++.|+..|+.|| .|..|.|+-- +||+ ||
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg--~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFG--EIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhc--cceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 56788777753 25678999999999 6666666521 3443 46
Q ss_pred EeCCHHHHHHHHHHhcCCCccc-cc----CeeEEEeeCCC
Q 014230 306 RYSTHAEAALAIQMGNTTQSSY-LF----GKQMKCSWGSK 340 (428)
Q Consensus 306 ~f~~~~~A~~A~~~l~g~~~~~-~~----g~~l~v~~a~~ 340 (428)
+|.....-..|+..|.|..++. .+ --.++|.|.++
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 6666666666676666652211 22 24677888764
No 222
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=79.77 E-value=4.5 Score=30.80 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=60.8
Q ss_pred CCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCc--ccCceeeeecccccCC-c-cCCC
Q 014230 64 IHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRH--LFGQPIKVNWAYASGQ-R-EDTS 139 (428)
Q Consensus 64 Lp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~l~v~~~~~~~~-~-~~~~ 139 (428)
||+.+ +-|.++|+.-|+|.+|..+..-.. ..|+..++|.. +.|+ |+|.-...... + ...+
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqypd-------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gTP 74 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYPD-------------NDALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGTP 74 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccCC-------------chhhheeeeehhhccCc-EEEccCCCcccEEEecCC
Confidence 56655 568899999999999876554221 12333334422 2333 44432221110 0 1111
Q ss_pred CcceeEecCCCcccCHHHHHHHhcc---CCCceEEEEeecCCCCCcccEEEEEeCCH
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSV---YPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~---~g~v~~~~i~~~~~~~~~~g~afV~f~~~ 193 (428)
..+.+ .--|..+|-.+++++|+. |-.|.+-.+.+|.-..-+-..||.-|...
T Consensus 75 sgnnv--~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 75 SGNNV--IFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCce--ecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 11111 224678999999999985 44555445555533333445788888754
No 223
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.90 E-value=13 Score=36.83 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=59.6
Q ss_pred CCCceeEEEcCCCcc-cCHHHHHHHHhccC--CeeEEEEEEeCC------------------------------------
Q 014230 259 NPQYTTVYVGNLAPE-VTQLDLHRHFHSLG--AGVIEEVRVQRD------------------------------------ 299 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G--~~~i~~i~i~~~------------------------------------ 299 (428)
...+++|-|.||.++ +..+||.-+|+.|= .+.|.+|.|-++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456689999999996 78999999888652 137888888632
Q ss_pred -----------------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE--Eee
Q 014230 300 -----------------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK--CSW 337 (428)
Q Consensus 300 -----------------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~--v~~ 337 (428)
-=||.|+|.+.+.|........|. .+...-.+ ++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~---EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGI---EFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcc---eeccccceeeeee
Confidence 027999999999999999999999 88865444 445
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=75.67 E-value=4.6 Score=33.05 Aligned_cols=106 Identities=8% Similarity=-0.054 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHhc-cCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCCccCC---CCcc
Q 014230 67 QVTEPLLQEVFSS-TGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHF 142 (428)
Q Consensus 67 ~~t~~~l~~~f~~-~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~---~~~~ 142 (428)
..+-..|...+.. ++....+.+..- ..++..+.|.+.+++.+++. .....+.|..+.+..-.+....... ....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~v 105 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPV 105 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccch
Confidence 3555666665543 333323333322 23689999999999999985 3456677777777655433222111 1122
Q ss_pred eeEecCCCcc-cCHHHHHHHhccCCCceEEEEe
Q 014230 143 NIFVGDLSPE-VTDATLFACFSVYPSCSDARVM 174 (428)
Q Consensus 143 ~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~i~ 174 (428)
=|.|.|||.. .+++-++.+.+.+|.+.++...
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 3667899997 7778889999999999887654
No 225
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=74.84 E-value=2.6 Score=44.96 Aligned_cols=10 Identities=40% Similarity=0.315 Sum_probs=3.7
Q ss_pred HHHHHHHhhh
Q 014230 18 MQQALLQQQS 27 (428)
Q Consensus 18 ~~q~~~q~~~ 27 (428)
.|||.++++.
T Consensus 1448 ~qqqlqhq~~ 1457 (1517)
T KOG1883|consen 1448 TQQQLQHQIP 1457 (1517)
T ss_pred HHHHHHHhcc
Confidence 3333333333
No 226
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=73.83 E-value=2.2 Score=45.67 Aligned_cols=8 Identities=13% Similarity=0.604 Sum_probs=3.3
Q ss_pred HHHHhccC
Q 014230 280 HRHFHSLG 287 (428)
Q Consensus 280 ~~~F~~~G 287 (428)
......||
T Consensus 2080 qq~~~~~~ 2087 (2131)
T KOG4369|consen 2080 QQMYQQYG 2087 (2131)
T ss_pred HHHHHHhc
Confidence 33444443
No 227
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=72.98 E-value=4.1 Score=43.71 Aligned_cols=6 Identities=33% Similarity=0.213 Sum_probs=2.3
Q ss_pred EEEEEc
Q 014230 97 GFIHYF 102 (428)
Q Consensus 97 afV~f~ 102 (428)
+...|.
T Consensus 1930 gs~~y~ 1935 (2131)
T KOG4369|consen 1930 GSNLYN 1935 (2131)
T ss_pred ccccch
Confidence 333333
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=67.60 E-value=8.4 Score=30.04 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=25.8
Q ss_pred eEEEcCCCccc---------CHHHHHHHHhccCCeeEEEEEEeCC-ccEEEEEeCCHHH
Q 014230 264 TVYVGNLAPEV---------TQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAE 312 (428)
Q Consensus 264 ~l~V~nLp~~~---------t~~~L~~~F~~~G~~~i~~i~i~~~-~g~afV~f~~~~~ 312 (428)
++.|.|++... +.++|++.|+.|.+..+.-+.-... +|+++|.|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 46677886543 5678999999998545444422222 6899999987543
No 229
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=62.69 E-value=6.6 Score=32.12 Aligned_cols=109 Identities=11% Similarity=-0.022 Sum_probs=66.2
Q ss_pred cCHHHHHHHhcc-CCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCCCcCCc
Q 014230 153 VTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231 (428)
Q Consensus 153 ~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~ 231 (428)
.+...|...+.. ++....+.+.. -..++..+.|.+.+++.+++. .....+.|..+.+..-.+........
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~-----l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~--- 99 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRD-----LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVK--- 99 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEE-----eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccc---
Confidence 445555555543 23332333331 123579999999999999886 35566778777776544322111000
Q ss_pred ccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcc-cCHHHHHHHHhccCCeeEEEEEEeC
Q 014230 232 DAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQR 298 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~~~i~~i~i~~ 298 (428)
......-|.|.|||.. .+++-|+.+.+.+| .+.++....
T Consensus 100 --------------------------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG--~~i~vD~~t 139 (153)
T PF14111_consen 100 --------------------------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIG--EPIEVDENT 139 (153)
T ss_pred --------------------------eeccchhhhhccCCHHHhhhHHHHHHHHhcC--CeEEEEcCC
Confidence 0001135778899997 57888999999999 777666553
No 230
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.64 E-value=13 Score=37.35 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 014230 30 HPGLLAAP 37 (428)
Q Consensus 30 ~~~~~~~~ 37 (428)
.|...+.+
T Consensus 86 ~P~~~~~~ 93 (1179)
T KOG3648|consen 86 QPPQPPFP 93 (1179)
T ss_pred CCCCCCcc
Confidence 33333333
No 231
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.74 E-value=20 Score=33.88 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=43.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCC-ceeEEEeecCCCceEEEEEccHHHHHHHHH
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~i~~~~~~~~g~afV~f~~~~~A~~a~~ 112 (428)
..|-|.++|.....+||...|+.|+. --+|+.+-+. .||-.|.+...|..||.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhh
Confidence 45889999999989999999999985 2345555554 69999999999999985
No 232
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.37 E-value=1.6 Score=42.69 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=53.6
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 210 (428)
.++||+.|+++.++-.+|..+|+.+..+..+.+..+........+.+|.|+..-....|+.+||++.+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4679999999999999999999998777666554332223455678999998877788888888776543
No 233
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.27 E-value=52 Score=31.23 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=44.5
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCC-ceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 201 (428)
...|-|.++|.....+||...|+.|+. =.+|+++-|. .+|-.|.+...|..|+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 457889999999999999999999954 3566666442 39999999999999996
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=58.00 E-value=43 Score=24.36 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=42.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-CceeEEEeecCC-CceEEEEEccHHHHHHHHHHh
Q 014230 59 VYVGNIHTQVTEPLLQEVFSS-TG-PVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSL 114 (428)
Q Consensus 59 l~v~nLp~~~t~~~l~~~f~~-~G-~v~~i~~~~~~~-~g~afV~f~~~~~A~~a~~~l 114 (428)
-|.-..+..++..+|++.++. || .|.+|.....+. ..=|+|.+....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 455667889999999999987 56 677777766543 245999999999998876544
No 235
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.63 E-value=13 Score=28.90 Aligned_cols=37 Identities=14% Similarity=0.435 Sum_probs=23.9
Q ss_pred CHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCH
Q 014230 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (428)
Q Consensus 154 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~ 193 (428)
+.++|++.|+.|..++ ++.+.++. .+.|+++|+|...
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SS
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCC
Confidence 4578999999998874 66666643 6889999999864
No 236
>PF14893 PNMA: PNMA
Probab=57.50 E-value=7.4 Score=36.43 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=35.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh----ccCCc--eeEEEeecCCCceEEEEEccHHH
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFS----STGPV--EGCKLIRKDKSSYGFIHYFDRRS 106 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~----~~G~v--~~i~~~~~~~~g~afV~f~~~~~ 106 (428)
+..|.|.|.+||.++++++|.+.+. +.|.. ..-.+.++.+..-|+|+|...-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 4567899999999999999887765 45543 22222333344578888876543
No 237
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=55.70 E-value=24 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=15.4
Q ss_pred HHHHHHHhccCCeeEEEEEEeC
Q 014230 277 LDLHRHFHSLGAGVIEEVRVQR 298 (428)
Q Consensus 277 ~~L~~~F~~~G~~~i~~i~i~~ 298 (428)
.+|+++|+..|...+..+....
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 6899999999954444444443
No 238
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=55.15 E-value=33 Score=24.94 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=42.5
Q ss_pred EEEcCCCcccCHHHHHHHHhc-cCCeeEEEEEEeCC---ccEEEEEeCCHHHHHHHHHH
Q 014230 265 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQM 319 (428)
Q Consensus 265 l~V~nLp~~~t~~~L~~~F~~-~G~~~i~~i~i~~~---~g~afV~f~~~~~A~~A~~~ 319 (428)
-|.-.++.+.+..+|+..++. || +.|.+|+...- ..-|||++..-.+|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~-VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFD-VKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC-CceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 444567889999999999997 55 68888877654 35799999998888887554
No 239
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=54.65 E-value=57 Score=23.31 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=42.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-CceeEEEeecCC-CceEEEEEccHHHHHHHHHHh
Q 014230 59 VYVGNIHTQVTEPLLQEVFSS-TG-PVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSL 114 (428)
Q Consensus 59 l~v~nLp~~~t~~~l~~~f~~-~G-~v~~i~~~~~~~-~g~afV~f~~~~~A~~a~~~l 114 (428)
-|+-.++.+++..+|++.++. || .|.+|....-+. ..=|||.+....+|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 566678899999999999987 55 577777665432 235999999999988876543
No 240
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=53.39 E-value=19 Score=31.28 Aligned_cols=10 Identities=30% Similarity=0.119 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 014230 6 LKQQQQQQQQ 15 (428)
Q Consensus 6 ~~qqqqqqq~ 15 (428)
+|||..+.|.
T Consensus 10 HQqQL~~MQk 19 (230)
T PF06752_consen 10 HQQQLVLMQK 19 (230)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 241
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.72 E-value=42 Score=23.97 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=42.2
Q ss_pred EEEcCCCcccCHHHHHHHHhc-cCCeeEEEEEEeCC---ccEEEEEeCCHHHHHHHHHH
Q 014230 265 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQM 319 (428)
Q Consensus 265 l~V~nLp~~~t~~~L~~~F~~-~G~~~i~~i~i~~~---~g~afV~f~~~~~A~~A~~~ 319 (428)
-|+-.++.+.|..+|+..++. || +.+.+|+...- ..-|||++..-+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~-VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFD-VKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC-CceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 555578999999999999997 55 67888777643 35799999998888876554
No 242
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.08 E-value=20 Score=33.94 Aligned_cols=14 Identities=7% Similarity=0.079 Sum_probs=6.8
Q ss_pred cCHHHHHHHHhccC
Q 014230 274 VTQLDLHRHFHSLG 287 (428)
Q Consensus 274 ~t~~~L~~~F~~~G 287 (428)
...++|+.-..+.+
T Consensus 458 f~~d~I~~s~rk~~ 471 (505)
T COG5624 458 FVDDIIHMSYRKQK 471 (505)
T ss_pred chHHHHHHHHHhcC
Confidence 34455554444444
No 243
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=48.26 E-value=20 Score=33.77 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=46.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEee--cC-----CCceEEEEEccHHHHHHHHHHhCCCcc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KD-----KSSYGFIHYFDRRSAAMAILSLNGRHL 119 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~--~~-----~~g~afV~f~~~~~A~~a~~~l~~~~~ 119 (428)
...|.|..||+..++++|.+-..++-.-.....+. +. ..+.|||.|...++.......++|..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35699999999999999988887765322222211 11 136799999999998888888888665
No 244
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=46.81 E-value=35 Score=23.70 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=42.7
Q ss_pred HHHHHHhccCC-CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 156 ATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 156 ~~l~~~f~~~g-~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
++|.+.|...| .|..+.-+..+.++..-..-||+.....+... .++=..+++..+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 45667777666 56777766666566677778888876655332 24556678899999876554
No 245
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=45.92 E-value=51 Score=27.72 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=44.8
Q ss_pred HHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-eEEEEEccCCCCCC
Q 014230 157 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-QIRCNWATKGAGNN 225 (428)
Q Consensus 157 ~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i~v~~~~~~~~~~ 225 (428)
....+|..|.+.....++ ++.+..-|.|.+.+.|..|.-.+++..|.|. .++.-++.+.....
T Consensus 31 ~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~~~ 94 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHPES 94 (193)
T ss_pred HHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCccc
Confidence 334556555544444444 3445677899999999999999999999888 88888887755443
No 246
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=44.97 E-value=13 Score=35.92 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=6.1
Q ss_pred eEEEcCCCcccCH
Q 014230 264 TVYVGNLAPEVTQ 276 (428)
Q Consensus 264 ~l~V~nLp~~~t~ 276 (428)
-+.|..|..++.+
T Consensus 492 AvKIHqlNK~Wrd 504 (775)
T KOG1151|consen 492 AVKIHQLNKNWRD 504 (775)
T ss_pred eEeeehhccchhh
Confidence 3444455555443
No 247
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=44.53 E-value=91 Score=20.59 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=38.9
Q ss_pred eEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHH
Q 014230 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHA 311 (428)
Q Consensus 264 ~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~ 311 (428)
|+.|.||.-.--...|+..+...- .|.++.+....+.+-|.|....
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~--GV~~v~vd~~~~~v~v~~~~~~ 46 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLP--GVKSVKVDLETKTVTVTYDPDK 46 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST--TEEEEEEETTTTEEEEEESTTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCC--CCcEEEEECCCCEEEEEEecCC
Confidence 577888888888889999999885 6899999999999999998653
No 248
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=42.42 E-value=10 Score=41.35 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=5.8
Q ss_pred CCeEEEcCCCCCC
Q 014230 56 CRSVYVGNIHTQV 68 (428)
Q Consensus 56 ~~~l~v~nLp~~~ 68 (428)
+.++|--+.++..
T Consensus 411 nqa~Y~~~a~~~s 423 (1973)
T KOG4407|consen 411 NQALYAVGAGPSS 423 (1973)
T ss_pred cchhhhcccCCch
Confidence 3345544444443
No 249
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=42.21 E-value=1.9e+02 Score=27.75 Aligned_cols=36 Identities=6% Similarity=0.162 Sum_probs=28.8
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeC--CeeEEEEEccC
Q 014230 185 FGFVSFRNQQDAQSAINDLTGKWLG--SRQIRCNWATK 220 (428)
Q Consensus 185 ~afV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~ 220 (428)
||.|++.+.+.+......|+|..+. +..+.+.|...
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 7999999999999999999998875 44555665543
No 250
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=41.52 E-value=39 Score=23.47 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=41.9
Q ss_pred HHHHHHhccCC-CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 156 ATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 156 ~~l~~~f~~~g-~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
++|.+.|...| .+..+.-+..+.++..-..-+|+.....+-.. -++-+.++|+.+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 35677777776 57777777666666666667788765543333 24556678999999876543
No 251
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.23 E-value=46 Score=31.20 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=36.3
Q ss_pred EEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCCccCCCCcceeEecCCCcccCHHHHHHHhc
Q 014230 97 GFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFS 163 (428)
Q Consensus 97 afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~ 163 (428)
|||+|.+..+|..|++.+.... ++.+++..+.++. .|.=.||..+..+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~---------DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD---------DIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc---------cccccccCCChHHHHHHHHHH
Confidence 7999999999999998554333 3455666554433 445557766666666655543
No 252
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=38.93 E-value=31 Score=32.56 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=45.7
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC--------ccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
+.+.|.+||+..++++|.+-..+|- .++....+... .+.|+|.|...++...-...++|+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~-~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFP-EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCc-cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 6789999999999999999888774 24444444422 478999999999966666767776
No 253
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=38.17 E-value=39 Score=31.64 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=25.5
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 303 GFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 303 afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
|||+|++..+|..|.+.+... ..+.+++..+-+|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~-----~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK-----RPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC-----CCCCceEeeCCCc
Confidence 799999999999999976654 3355567665544
No 254
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.11 E-value=1.7e+02 Score=21.56 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=36.0
Q ss_pred HHHHHHHHhccCCeeEEEEEEeCC--ccEEEEEeCCHHHHHHHHHHhcC
Q 014230 276 QLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNT 322 (428)
Q Consensus 276 ~~~L~~~F~~~G~~~i~~i~i~~~--~g~afV~f~~~~~A~~A~~~l~g 322 (428)
.+.++++++..| +++.++.+... -....+++.|.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~G-g~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALG-GKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcC-CEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 456888899998 58888888765 45788999999998887765554
No 255
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.66 E-value=2.3e+02 Score=26.38 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHhc-------------cCCceeEEEeecCCCceEEEEEccH
Q 014230 67 QVTEPLLQEVFSS-------------TGPVEGCKLIRKDKSSYGFIHYFDR 104 (428)
Q Consensus 67 ~~t~~~l~~~f~~-------------~G~v~~i~~~~~~~~g~afV~f~~~ 104 (428)
-+|..+|.+|=.. .|.++-|++....+..|-|-+|.+.
T Consensus 302 ~WtRpdI~~FK~~i~~d~~~gvItvGhGetVTVRVPThenGsclFWEFATD 352 (469)
T KOG3878|consen 302 IWTRPDIEQFKTEISADDGDGVITVGHGETVTVRVPTHENGSCLFWEFATD 352 (469)
T ss_pred hcCcccHHHHHHHhccCCCCCeEEecCCceEEEeccccCCCceEEEEeccc
Confidence 3566666665432 3455556665555556778888664
No 256
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=34.64 E-value=3.9e+02 Score=25.03 Aligned_cols=118 Identities=13% Similarity=0.113 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHH-----------HHhccC-CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCcee
Q 014230 57 RSVYVGNIHTQVTEPLLQE-----------VFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~-----------~f~~~G-~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 124 (428)
|+-.+-+|.+.-|..||+- +.+.|| ...+|.++.+... -.+.-.+.....+|+.-|-..--.|-.|
T Consensus 64 rrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~--s~~~~PT~~Nir~Al~wLV~~aq~gD~L 141 (362)
T KOG1546|consen 64 RRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDE--SPVRIPTGKNIRRALRWLVESAQPGDSL 141 (362)
T ss_pred ceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCC--cccccCcHHHHHHHHHHHHhcCCCCCEE
Confidence 3455557888888888752 456888 6777888877542 2345566677778887766555567788
Q ss_pred eeecccccCCcc----CCCC--cceeEecCCC---cccCHHHHHHHhccCCCceEEEEeec
Q 014230 125 KVNWAYASGQRE----DTSG--HFNIFVGDLS---PEVTDATLFACFSVYPSCSDARVMWD 176 (428)
Q Consensus 125 ~v~~~~~~~~~~----~~~~--~~~l~v~~lp---~~~~~~~l~~~f~~~g~v~~~~i~~~ 176 (428)
.++|+-.-.+.. ++.. .-+|+=-... .-+++++.+.+.++.-.=.++.++.|
T Consensus 142 vfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~D 202 (362)
T KOG1546|consen 142 VFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISD 202 (362)
T ss_pred EEEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEee
Confidence 888874433221 1111 1222221221 12557777777777644445555555
No 257
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=33.18 E-value=87 Score=23.16 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=37.4
Q ss_pred CCCcccCHHHHHHHHhccCCeeEEEEEEeCC--ccEEEEEeCCHHHHHHHHHHhc
Q 014230 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 321 (428)
Q Consensus 269 nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~--~g~afV~f~~~~~A~~A~~~l~ 321 (428)
.+-+.++...|..-|---|- .-.-..+-+| +.+|.|+|.+.+.+..|.+.|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gk-k~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGK-KNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCc-ccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 45666778888777766661 2233444455 7899999999999999987765
No 258
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=32.52 E-value=30 Score=32.26 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=6.0
Q ss_pred HHHHHHHhcc
Q 014230 71 PLLQEVFSST 80 (428)
Q Consensus 71 ~~l~~~f~~~ 80 (428)
..|.+++..+
T Consensus 99 rt~~~~laeh 108 (475)
T KOG3982|consen 99 RTVVEFLAEH 108 (475)
T ss_pred HHHHHHHHhC
Confidence 4566666654
No 259
>PRK10927 essential cell division protein FtsN; Provisional
Probab=32.44 E-value=1.3e+02 Score=27.82 Aligned_cols=64 Identities=8% Similarity=0.006 Sum_probs=40.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEE---EEccHHHHHHHHHHhCCCcccCc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFI---HYFDRRSAAMAILSLNGRHLFGQ 122 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV---~f~~~~~A~~a~~~l~~~~~~g~ 122 (428)
..-.|-|+.+-....-+.|+.-+..-|--..|. .+. ++-=| =|.+.++|++++..|...-+.|.
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~--~~g--~~~RVrVGPf~sr~eAe~a~~rLk~aGis~c 312 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--TNN--GWNRVVIGPVKGKENADSTLNRLKMAGHTNC 312 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEc--cCC--cEEEEEeCCCCCHHHHHHHHHHHHHCCCCce
Confidence 335577777776666677888777777544442 111 22222 36789999999988877655443
No 260
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.35 E-value=26 Score=33.23 Aligned_cols=61 Identities=23% Similarity=0.206 Sum_probs=48.9
Q ss_pred cceeEecCCCcccCHH--------HHHHHhcc--CCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 014230 141 HFNIFVGDLSPEVTDA--------TLFACFSV--YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~--------~l~~~f~~--~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 201 (428)
.+.+|+.+.......+ ++...|.. .+++..+...+|.....++|..|++|...+.+.+...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567777777665444 89999988 5778888888887677889999999999999998774
No 261
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.32 E-value=60 Score=29.09 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=26.3
Q ss_pred CeEEEcCCCCCC------------CHHHHHHHHhccCCceeEEEe
Q 014230 57 RSVYVGNIHTQV------------TEPLLQEVFSSTGPVEGCKLI 89 (428)
Q Consensus 57 ~~l~v~nLp~~~------------t~~~l~~~f~~~G~v~~i~~~ 89 (428)
.||++.+||-.+ +++-|+..|+.||.|..|.+.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 468999998543 577899999999999877663
No 262
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=32.17 E-value=11 Score=37.23 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=51.1
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
...++||+.|++++++-.+|..+++.+- -+..+.+... ..+..|+|+---.-..|+.+||+. .+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~--~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~i---rl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIP--GFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGI---RLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCc--hheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhc---ccccccc
Confidence 3447899999999999999999999885 3444433332 457889998877777888888876 5554444
No 263
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=31.54 E-value=16 Score=39.99 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.4
Q ss_pred EEEeCC
Q 014230 187 FVSFRN 192 (428)
Q Consensus 187 fV~f~~ 192 (428)
|+..++
T Consensus 634 t~sIk~ 639 (1973)
T KOG4407|consen 634 TSSIKT 639 (1973)
T ss_pred eeeeec
Confidence 444433
No 264
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=31.16 E-value=1.7e+02 Score=19.67 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=29.3
Q ss_pred CHHHHHHHHhccC-CceeEEEeecCCCceEEEEEccHHHHHHHHHH
Q 014230 69 TEPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS 113 (428)
Q Consensus 69 t~~~l~~~f~~~G-~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~ 113 (428)
.-.+|.++|.+.| +|.++-......++..-+.+.+.+.|.++++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 3478888888887 67777665554444555566666666666643
No 265
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.26 E-value=37 Score=29.73 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=24.5
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccC
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLG 287 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G 287 (428)
..+||+-|+|...|++.|+.+.+..|
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg 65 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLG 65 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhh
Confidence 37899999999999999999999998
No 266
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.18 E-value=2e+02 Score=21.19 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=34.7
Q ss_pred HHHHHHHHhccC-CceeEEEeecCCCceEEEEEccHHHHHHHHHHh
Q 014230 70 EPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (428)
Q Consensus 70 ~~~l~~~f~~~G-~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l 114 (428)
.+.++++++..| .+.++-.....-.....+++.|.+.|.++...+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 366788888887 688888877765567889999999888876544
No 267
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=30.01 E-value=2.8e+02 Score=21.98 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=48.4
Q ss_pred eeEEEcCCCcc---cCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccC-eeEEEeeC
Q 014230 263 TTVYVGNLAPE---VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-KQMKCSWG 338 (428)
Q Consensus 263 ~~l~V~nLp~~---~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g-~~l~v~~a 338 (428)
..|.|+....+ .+-..+.+.++.-| ..++++... .+...|.|++.++-.+|.+.+... +++ -.|-+..+
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~g-I~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~----L~~~y~VAlnl~ 108 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANG-IHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRT----LPHGYIIAQQDD 108 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCC-CCcceEEee--CCEEEEEECCHHHHHHHHHHHHHH----cCCCCEEEEecC
Confidence 35777666444 56678889999887 355555544 458899999999999999988876 443 34544443
No 268
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=29.53 E-value=1.6e+02 Score=20.34 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=39.2
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCC
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYST 309 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~ 309 (428)
.+|+|.++.-.--...++..++... .+..+.+...++.++|.|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~--gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVD--GVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCC--CeeEEEEEcccCeEEEEEcC
Confidence 5788888888888888999999887 58888888888899999998
No 269
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.46 E-value=1.1e+02 Score=22.14 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=24.8
Q ss_pred eeEEEEEEeCC-ccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 289 GVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 289 ~~i~~i~i~~~-~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
..|.++....+ +||-||+=.+..+...|++.+.+.
T Consensus 32 l~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 32 LNIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ----EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 36777777766 999999999999999999866653
No 270
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=27.81 E-value=1.3e+02 Score=22.43 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=25.7
Q ss_pred HHHHHHHhccCCeeEE---EEEEeCC----ccEEEEEeCCHHHHHHHHH
Q 014230 277 LDLHRHFHSLGAGVIE---EVRVQRD----KGFGFVRYSTHAEAALAIQ 318 (428)
Q Consensus 277 ~~L~~~F~~~G~~~i~---~i~i~~~----~g~afV~f~~~~~A~~A~~ 318 (428)
..+...|++||..-+. ++..+.. .....|+|.|.+.|..+.+
T Consensus 23 ~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 23 SKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred HHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhc
Confidence 3456778899821111 1122222 4578999999999888753
No 271
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.82 E-value=11 Score=35.88 Aligned_cols=75 Identities=8% Similarity=-0.194 Sum_probs=54.3
Q ss_pred eeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
..|+..+|...+++++.-+|..||.|..+...+.-..+..+-.+||.-.+ .++..++..+.-..+.|..+++..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 45778899999999999999999999888776554555666678887654 3556666655555556666666544
No 272
>PF14893 PNMA: PNMA
Probab=26.37 E-value=44 Score=31.39 Aligned_cols=60 Identities=10% Similarity=0.158 Sum_probs=37.2
Q ss_pred eeEEEcCCCcccCHHHHHHHHh----ccCCeeEEEEEEeCC--ccEEEEEeCCHHHHHHHHHHhcC
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFH----SLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNT 322 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~----~~G~~~i~~i~i~~~--~g~afV~f~~~~~A~~A~~~l~g 322 (428)
+.|.|.+||.++++++|.+.+. ..|...|..-.+.++ ..-|+|+|...-+-...=...-|
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~i~g 84 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPREIPG 84 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchhcCC
Confidence 6799999999999999887754 455223333222332 35688888765554443344333
No 273
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=26.26 E-value=2.4e+02 Score=20.00 Aligned_cols=55 Identities=9% Similarity=-0.008 Sum_probs=38.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-------cCCceeEEEeec--CCCceEEEEEccHHHHHHHHHH
Q 014230 59 VYVGNIHTQVTEPLLQEVFSS-------TGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILS 113 (428)
Q Consensus 59 l~v~nLp~~~t~~~l~~~f~~-------~G~v~~i~~~~~--~~~g~afV~f~~~~~A~~a~~~ 113 (428)
|..++||..+|.++|...... +..|.-++...+ ..+-||+.+=.|.+...++.+.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~ 66 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR 66 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH
Confidence 567889998999998876543 434444444333 5556888888888887777654
No 274
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=24.56 E-value=1.1e+02 Score=25.80 Aligned_cols=58 Identities=10% Similarity=0.050 Sum_probs=37.9
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHH
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAIND 202 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~-~~~~g~afV~f~~~~~a~~a~~~ 202 (428)
.+++|.. +.+...++|..+-+ |.+..+.+.+.... ...+|-.||+|.+.+.|..+++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3566665 33333445555444 78888777654211 25788899999999999987764
No 275
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.21 E-value=1.1e+02 Score=22.05 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=22.8
Q ss_pred CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCC
Q 014230 82 PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG 116 (428)
Q Consensus 82 ~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 116 (428)
.|.++. .++.-+||-||+=.+..+..+|++.+.+
T Consensus 33 ~I~Si~-~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIF-APDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEE-E-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEE-EeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 344443 3455679999999999999999876543
No 276
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.72 E-value=2.6e+02 Score=19.55 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=29.8
Q ss_pred HHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhC
Q 014230 71 PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (428)
Q Consensus 71 ~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 115 (428)
.++.+.+..+| +...++.-...-++.|+-+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777778888 434444333224678888889999888877653
No 277
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.36 E-value=97 Score=26.05 Aligned_cols=53 Identities=19% Similarity=0.102 Sum_probs=35.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC-----CceEEEEEccHHHHHHHHHH
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAILS 113 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~-----~g~afV~f~~~~~A~~a~~~ 113 (428)
|++|.. +.+...++|..+-+ |.+..|.+..... +|-.||+|.+.+.|..+++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 556665 33333345555544 7888777765432 47899999999999888754
No 278
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=22.15 E-value=1.5e+02 Score=23.01 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=25.0
Q ss_pred cCHHHHHHHhcc-CCCceEEEEe----ecCCCCCcccEEEEEeCCHHHHHH
Q 014230 153 VTDATLFACFSV-YPSCSDARVM----WDQKTGRSRGFGFVSFRNQQDAQS 198 (428)
Q Consensus 153 ~~~~~l~~~f~~-~g~v~~~~i~----~~~~~~~~~g~afV~f~~~~~a~~ 198 (428)
++.+||++-+.. |-.-.+..++ .....|++.|||.| |++.+.|.+
T Consensus 35 vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 35 VSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 456666665543 3222222222 22345788999988 777776654
No 279
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.89 E-value=82 Score=31.85 Aligned_cols=9 Identities=11% Similarity=0.420 Sum_probs=4.0
Q ss_pred CeEEEcCCC
Q 014230 57 RSVYVGNIH 65 (428)
Q Consensus 57 ~~l~v~nLp 65 (428)
-.|++...|
T Consensus 234 pvi~~pqmP 242 (728)
T KOG4592|consen 234 PVIYLPQMP 242 (728)
T ss_pred CccccccCh
Confidence 345544443
No 280
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=21.78 E-value=1e+02 Score=28.97 Aligned_cols=11 Identities=9% Similarity=0.151 Sum_probs=5.2
Q ss_pred CeeEEEEEccC
Q 014230 210 SRQIRCNWATK 220 (428)
Q Consensus 210 g~~i~v~~~~~ 220 (428)
.+.|+|...-+
T Consensus 213 ~kaIKVTVDGP 223 (475)
T KOG3982|consen 213 HKAIKVTVDGP 223 (475)
T ss_pred eceEEEeccCC
Confidence 34555554433
No 281
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.68 E-value=1.5e+02 Score=20.58 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=20.4
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCC
Q 014230 301 GFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 301 g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
.+.+|.|.+..+|.+|-+.|...
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~ 24 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKN 24 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHC
Confidence 46899999999999999988876
No 282
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.57 E-value=2.3e+02 Score=23.03 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=39.8
Q ss_pred EEEcCCCcccCHHHHHHHHhc-cCCeeEEEEEEeCC---ccEEEEEeCCHHHHHHHHH
Q 014230 265 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQ 318 (428)
Q Consensus 265 l~V~nLp~~~t~~~L~~~F~~-~G~~~i~~i~i~~~---~g~afV~f~~~~~A~~A~~ 318 (428)
-++..++...+..+|++.++. |+ +.|..|....- ..-|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~-VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYD-VKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhC-CeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 455567889999999999997 65 68888877643 2469999988777665444
No 283
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.56 E-value=68 Score=19.06 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=9.9
Q ss_pred ccCHHHHHHHHhccC
Q 014230 273 EVTQLDLHRHFHSLG 287 (428)
Q Consensus 273 ~~t~~~L~~~F~~~G 287 (428)
+++++.|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 678999999998764
No 284
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=21.36 E-value=2.3e+02 Score=18.03 Aligned_cols=41 Identities=10% Similarity=0.180 Sum_probs=28.6
Q ss_pred HHHHHHHhccC-CceeEEEeecC-CCceEEEEEccHHHHHHHH
Q 014230 71 PLLQEVFSSTG-PVEGCKLIRKD-KSSYGFIHYFDRRSAAMAI 111 (428)
Q Consensus 71 ~~l~~~f~~~G-~v~~i~~~~~~-~~g~afV~f~~~~~A~~a~ 111 (428)
..+...+...| +|..+.+.... ..+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 66777787777 67777766654 4456677788877777664
No 285
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=21.28 E-value=4.8e+02 Score=24.61 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=29.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHH----------HhccCCceeEEEeecCC
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEV----------FSSTGPVEGCKLIRKDK 93 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~----------f~~~G~v~~i~~~~~~~ 93 (428)
..-+.+|.-.|||... |.||+.+ |+..|.|.+|.+.....
T Consensus 34 ~dfSLSlv~TnLp~E~-E~eLRsfiakrlskgal~~G~GnVasvel~~pe~ 83 (353)
T PF15053_consen 34 DDFSLSLVDTNLPSEA-EPELRSFIAKRLSKGALFEGMGNVASVELSIPES 83 (353)
T ss_pred CcceeeeeecCCCccc-cHHHHHHHHHHHhccccccCCCceeeEeecCCCc
Confidence 4456889999999876 5666654 44568999988866554
No 286
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=21.07 E-value=4.3e+02 Score=20.97 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=45.8
Q ss_pred eEEEcCCCCC---CCHHHHHHHHhccC-CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 58 SVYVGNIHTQ---VTEPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 58 ~l~v~nLp~~---~t~~~l~~~f~~~G-~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
.|.|+..... .+...+.+.++.-| .++++..-.+ ...|.|.+.++-.+|.+.|....-.+-.|.++.+
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~----~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND----SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC----EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3777766444 45678888888877 4656554333 5899999999988888777655444445555444
No 287
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=4e+02 Score=25.62 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=55.4
Q ss_pred CCCCCceeEEEcCCCcc-cCHHHHHHHHhc---cCCeeEEEEEEeCC---------------------------------
Q 014230 257 ENNPQYTTVYVGNLAPE-VTQLDLHRHFHS---LGAGVIEEVRVQRD--------------------------------- 299 (428)
Q Consensus 257 ~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~---~G~~~i~~i~i~~~--------------------------------- 299 (428)
+...+.++|-|-||.++ +...+|...|+. +| +.+..|.|.++
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~g-gkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYG-GKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCC-CccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 34556678999999986 788888888774 44 36666666421
Q ss_pred -------------------cc-------------------EEEEEeCCHHHHHHHHHHhcCCCcccccCe--eEEEee
Q 014230 300 -------------------KG-------------------FGFVRYSTHAEAALAIQMGNTTQSSYLFGK--QMKCSW 337 (428)
Q Consensus 300 -------------------~g-------------------~afV~f~~~~~A~~A~~~l~g~~~~~~~g~--~l~v~~ 337 (428)
+| ||.|+|.+.+.+.......+|. ++... .+-++|
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~---Eye~san~~DLRf 294 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGV---EYENSANVLDLRF 294 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcc---ccccccceeeeee
Confidence 12 6899999999999999999998 66653 344444
No 288
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.20 E-value=3.6e+02 Score=27.43 Aligned_cols=91 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeEE--------------EEEccCCCCCCCCcCCcccccchhccCCCCCCCcccC
Q 014230 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIR--------------CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETT 251 (428)
Q Consensus 186 afV~f~~~~~a~~a~~~l~~~~~~g~~i~--------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (428)
||+++.++..-+--.+.|+...+.+-.|. |+|+++..-..--+......
T Consensus 239 C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~----------------- 301 (621)
T COG0445 239 CYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDT----------------- 301 (621)
T ss_pred eeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCC-----------------
Q ss_pred CCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeC
Q 014230 252 NTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYS 308 (428)
Q Consensus 252 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~ 308 (428)
..+|+.+|..++.++-=.++....- -.+.+.+.+. ||| |+|+
T Consensus 302 -----------~evY~nGlSTSlP~dVQ~~~irsip--GlEna~i~rp-gYA-IEYD 343 (621)
T COG0445 302 -----------DEVYPNGLSTSLPEDVQEQIIRSIP--GLENAEILRP-GYA-IEYD 343 (621)
T ss_pred -----------ceEecCcccccCCHHHHHHHHHhCc--ccccceeecc-cee-eeec
Done!