Query 014230
Match_columns 428
No_of_seqs 389 out of 3157
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 07:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 6.3E-46 2.2E-50 342.9 28.7 238 55-341 21-264 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 7.5E-45 2.6E-49 337.0 26.3 244 52-341 37-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 6.1E-34 2.1E-38 250.8 18.1 164 139-340 13-180 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 4.3E-33 1.5E-37 235.7 19.9 162 57-219 1-165 (166)
5 4f02_A Polyadenylate-binding p 100.0 2.3E-33 7.8E-38 247.1 18.4 166 53-221 12-181 (213)
6 2qfj_A FBP-interacting repress 100.0 5E-33 1.7E-37 245.9 15.8 176 140-344 27-208 (216)
7 1b7f_A Protein (SXL-lethal pro 100.0 3E-32 1E-36 231.0 19.6 161 55-218 2-168 (168)
8 2qfj_A FBP-interacting repress 100.0 3.1E-32 1.1E-36 240.8 20.1 169 54-222 26-206 (216)
9 3md3_A Nuclear and cytoplasmic 100.0 4.4E-32 1.5E-36 229.5 19.8 160 142-340 1-166 (166)
10 1b7f_A Protein (SXL-lethal pro 100.0 5.2E-32 1.8E-36 229.6 20.2 159 140-338 2-168 (168)
11 1l3k_A Heterogeneous nuclear r 100.0 5.7E-32 1.9E-36 235.4 19.3 171 52-224 9-186 (196)
12 1fxl_A Paraneoplastic encephal 100.0 1.1E-31 3.7E-36 227.3 20.5 158 141-338 2-167 (167)
13 1fxl_A Paraneoplastic encephal 100.0 1.6E-31 5.4E-36 226.3 20.0 160 56-218 2-167 (167)
14 1l3k_A Heterogeneous nuclear r 100.0 1.3E-31 4.5E-36 233.1 19.4 171 137-343 9-185 (196)
15 2adc_A Polypyrimidine tract-bi 100.0 4.1E-31 1.4E-35 235.4 21.5 196 137-341 30-228 (229)
16 3nmr_A Cugbp ELAV-like family 100.0 2.6E-31 8.8E-36 226.8 19.1 161 140-339 2-175 (175)
17 2g4b_A Splicing factor U2AF 65 100.0 3.5E-31 1.2E-35 225.4 18.3 159 55-219 3-172 (172)
18 3pgw_A U1-A; protein-RNA compl 100.0 1.6E-30 5.3E-35 239.5 23.6 195 138-340 6-282 (282)
19 3nmr_A Cugbp ELAV-like family 100.0 3.2E-31 1.1E-35 226.2 17.5 162 55-219 2-175 (175)
20 1qm9_A Polypyrimidine tract-bi 100.0 6.3E-31 2.2E-35 229.1 18.7 192 141-341 3-197 (198)
21 3tyt_A Heterogeneous nuclear r 100.0 4.6E-31 1.6E-35 229.8 17.3 161 55-218 3-204 (205)
22 2cjk_A Nuclear polyadenylated 100.0 1.5E-31 5.1E-36 226.6 13.7 161 55-221 2-166 (167)
23 2yh0_A Splicing factor U2AF 65 100.0 9.2E-31 3.1E-35 228.1 19.0 165 55-222 3-195 (198)
24 3tyt_A Heterogeneous nuclear r 100.0 1.2E-30 4.2E-35 227.1 18.7 189 140-338 3-204 (205)
25 2cjk_A Nuclear polyadenylated 100.0 1.7E-31 5.7E-36 226.2 11.9 159 140-341 2-166 (167)
26 2adc_A Polypyrimidine tract-bi 100.0 4.3E-30 1.5E-34 228.8 19.9 164 52-221 30-228 (229)
27 2yh0_A Splicing factor U2AF 65 100.0 1.2E-30 4.2E-35 227.3 15.0 176 141-343 4-196 (198)
28 1fje_B Nucleolin RBD12, protei 100.0 1E-30 3.5E-35 223.2 13.5 165 137-341 9-174 (175)
29 1fje_B Nucleolin RBD12, protei 100.0 2.5E-30 8.5E-35 220.8 15.8 163 52-221 9-174 (175)
30 3smz_A Protein raver-1, ribonu 100.0 1.2E-29 4E-34 233.9 21.2 168 55-223 94-266 (284)
31 3pgw_A U1-A; protein-RNA compl 100.0 1.6E-29 5.6E-34 232.7 20.9 162 53-219 6-281 (282)
32 1qm9_A Polypyrimidine tract-bi 100.0 8.4E-30 2.9E-34 222.0 16.4 160 56-221 3-197 (198)
33 3sde_A Paraspeckle component 1 100.0 3.2E-29 1.1E-33 227.6 19.7 158 52-221 18-179 (261)
34 2g4b_A Splicing factor U2AF 65 100.0 2.1E-29 7.3E-34 214.3 17.3 153 140-339 3-172 (172)
35 2ghp_A U4/U6 snRNA-associated 100.0 2.3E-29 8E-34 232.8 17.7 166 55-221 116-291 (292)
36 3sde_A Paraspeckle component 1 100.0 4.3E-28 1.5E-32 220.2 19.7 153 138-341 19-179 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 3.5E-22 1.2E-26 167.0 14.4 138 86-223 3-152 (158)
38 2kn4_A Immunoglobulin G-bindin 99.9 2.7E-21 9.1E-26 161.6 15.7 146 170-344 2-153 (158)
39 2i2y_A Fusion protein consists 99.9 8.3E-22 2.8E-26 163.0 11.5 138 179-341 9-148 (150)
40 4f25_A Polyadenylate-binding p 99.9 1.1E-21 3.7E-26 154.3 10.4 109 141-278 5-113 (115)
41 2i2y_A Fusion protein consists 99.8 4.4E-21 1.5E-25 158.7 11.1 123 93-221 12-148 (150)
42 4f25_A Polyadenylate-binding p 99.8 3.5E-21 1.2E-25 151.4 9.8 103 55-157 4-113 (115)
43 4fxv_A ELAV-like protein 1; RN 99.8 4.7E-20 1.6E-24 140.5 11.1 80 141-220 19-98 (99)
44 1sjq_A Polypyrimidine tract-bi 99.8 2.1E-19 7.2E-24 136.4 10.5 81 260-345 14-96 (105)
45 3r27_A HnRNP L, heterogeneous 99.8 4.2E-19 1.5E-23 133.3 11.0 81 258-341 17-97 (100)
46 3s8s_A Histone-lysine N-methyl 99.8 6E-19 2.1E-23 136.9 11.7 83 139-221 4-86 (110)
47 2lxi_A RNA-binding protein 10; 99.8 1.5E-19 5E-24 135.6 7.2 83 142-224 2-86 (91)
48 2lea_A Serine/arginine-rich sp 99.8 1.8E-19 6.2E-24 145.6 7.4 124 96-223 6-129 (135)
49 1wex_A Hypothetical protein (r 99.8 2.4E-18 8.4E-23 131.7 12.8 83 258-343 11-93 (104)
50 4fxv_A ELAV-like protein 1; RN 99.8 7E-19 2.4E-23 133.9 9.7 75 261-340 18-98 (99)
51 2lkz_A RNA-binding protein 5; 99.8 7.4E-19 2.5E-23 132.2 9.0 82 139-220 7-94 (95)
52 1x4d_A Matrin 3; structural ge 99.8 1.4E-18 4.7E-23 132.0 10.2 79 261-342 14-93 (102)
53 2wbr_A GW182, gawky, LD47780P; 99.8 1.7E-18 5.8E-23 125.0 10.1 73 262-339 7-79 (89)
54 2cq1_A PTB-like protein L; RRM 99.8 4.8E-18 1.6E-22 129.2 12.7 82 258-344 11-94 (101)
55 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-18 3.6E-23 137.4 9.3 104 53-167 5-109 (115)
56 2ad9_A Polypyrimidine tract-bi 99.8 2.6E-18 8.8E-23 133.9 11.0 82 258-344 27-110 (119)
57 3md1_A Nuclear and cytoplasmic 99.8 4.5E-18 1.5E-22 125.5 11.5 80 142-221 2-81 (83)
58 2dgo_A Cytotoxic granule-assoc 99.8 8.8E-18 3E-22 132.1 13.7 90 135-224 9-98 (115)
59 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.2E-18 1.1E-22 127.5 10.5 83 139-221 4-86 (87)
60 2cq0_A Eukaryotic translation 99.8 6.8E-18 2.3E-22 130.0 12.5 88 136-223 10-97 (103)
61 2hvz_A Splicing factor, argini 99.8 2E-18 6.7E-23 132.5 9.2 93 57-150 1-100 (101)
62 2cpz_A CUG triplet repeat RNA- 99.8 8.6E-18 2.9E-22 132.2 12.7 88 136-223 20-107 (115)
63 2cqc_A Arginine/serine-rich sp 99.8 6.8E-18 2.3E-22 127.9 11.6 86 135-220 9-94 (95)
64 2lkz_A RNA-binding protein 5; 99.8 1.5E-18 5E-23 130.6 7.7 80 261-340 8-94 (95)
65 1whw_A Hypothetical protein ri 99.8 8.2E-18 2.8E-22 128.5 11.9 87 138-224 5-91 (99)
66 2x1f_A MRNA 3'-END-processing 99.8 5.2E-18 1.8E-22 128.8 10.7 83 140-222 1-83 (96)
67 1sjq_A Polypyrimidine tract-bi 99.8 5.6E-18 1.9E-22 128.6 10.5 81 53-135 13-95 (105)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.9E-18 1.7E-22 125.8 10.0 82 138-219 4-85 (85)
69 1x4f_A Matrin 3; structural ge 99.7 4.7E-18 1.6E-22 130.9 10.1 83 259-344 22-105 (112)
70 2cqb_A Peptidyl-prolyl CIS-tra 99.7 9.8E-18 3.3E-22 128.8 11.8 87 138-224 9-95 (102)
71 2dgs_A DAZ-associated protein 99.7 1.2E-17 4E-22 127.6 12.2 86 138-224 7-92 (99)
72 2dnz_A Probable RNA-binding pr 99.7 1.1E-17 3.8E-22 126.8 11.8 85 139-223 3-87 (95)
73 2do4_A Squamous cell carcinoma 99.7 1.4E-17 4.9E-22 127.4 12.6 85 137-222 13-97 (100)
74 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-17 4.1E-22 126.3 11.7 83 137-219 12-94 (94)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.7E-18 2E-22 142.1 10.9 125 99-223 11-154 (165)
76 3p5t_L Cleavage and polyadenyl 99.7 1.3E-18 4.5E-23 130.3 6.2 81 142-222 2-84 (90)
77 1x5t_A Splicing factor 3B subu 99.7 8.4E-18 2.9E-22 127.7 10.7 86 139-224 3-89 (96)
78 1why_A Hypothetical protein ri 99.7 1.7E-17 5.9E-22 126.1 12.4 80 259-343 14-95 (97)
79 2cpj_A Non-POU domain-containi 99.7 1.1E-17 3.7E-22 127.8 11.2 81 259-344 12-92 (99)
80 1x5u_A Splicing factor 3B subu 99.7 1.2E-17 4.1E-22 129.1 11.5 88 136-223 10-97 (105)
81 2do0_A HnRNP M, heterogeneous 99.7 3.3E-17 1.1E-21 128.6 14.2 83 259-346 12-99 (114)
82 2khc_A Testis-specific RNP-typ 99.7 7.7E-18 2.6E-22 133.1 10.5 85 135-219 34-118 (118)
83 2dgo_A Cytotoxic granule-assoc 99.7 4.5E-17 1.5E-21 128.0 14.9 82 259-345 12-99 (115)
84 2dnm_A SRP46 splicing factor; 99.7 8.5E-18 2.9E-22 129.4 10.2 87 137-223 9-95 (103)
85 3r27_A HnRNP L, heterogeneous 99.7 7.2E-18 2.5E-22 126.6 9.5 79 52-132 17-97 (100)
86 3lqv_A PRE-mRNA branch site pr 99.7 3.6E-18 1.2E-22 134.4 8.3 104 138-287 5-108 (115)
87 2ytc_A PRE-mRNA-splicing facto 99.7 9.3E-18 3.2E-22 124.3 10.1 76 259-339 9-85 (85)
88 2la6_A RNA-binding protein FUS 99.7 1.2E-17 4.1E-22 127.5 11.0 84 136-219 8-99 (99)
89 2jrs_A RNA-binding protein 39; 99.7 1.2E-17 4.1E-22 129.4 10.6 86 136-221 21-106 (108)
90 1x4h_A RNA-binding protein 28; 99.7 2.1E-17 7.4E-22 129.0 12.2 88 137-224 11-104 (111)
91 1p27_B RNA-binding protein 8A; 99.7 1.1E-17 3.7E-22 129.6 10.3 85 138-222 20-104 (106)
92 2dnh_A Bruno-like 5, RNA bindi 99.7 2.4E-17 8.1E-22 127.4 12.1 87 137-224 11-100 (105)
93 3ns6_A Eukaryotic translation 99.7 3.2E-18 1.1E-22 130.8 7.0 81 140-220 5-92 (100)
94 2cph_A RNA binding motif prote 99.7 2.2E-17 7.6E-22 128.1 11.8 88 136-223 10-99 (107)
95 2dgx_A KIAA0430 protein; RRM d 99.7 2.4E-17 8.2E-22 125.0 11.7 78 261-343 8-92 (96)
96 2dng_A Eukaryotic translation 99.7 3.7E-17 1.3E-21 125.8 12.6 85 137-223 11-95 (103)
97 2kxn_B Transformer-2 protein h 99.7 1E-17 3.5E-22 134.1 9.8 87 136-222 41-127 (129)
98 1x4g_A Nucleolysin TIAR; struc 99.7 2.6E-17 8.9E-22 128.0 11.9 79 261-344 24-102 (109)
99 1x5s_A Cold-inducible RNA-bind 99.7 1.4E-17 4.7E-22 128.0 10.1 86 138-223 9-94 (102)
100 2cpf_A RNA binding motif prote 99.7 1.6E-17 5.6E-22 126.6 10.4 85 139-223 3-90 (98)
101 2d9p_A Polyadenylate-binding p 99.7 3E-17 1E-21 126.3 12.0 88 135-224 9-96 (103)
102 2wbr_A GW182, gawky, LD47780P; 99.7 2.5E-17 8.4E-22 118.9 10.6 72 56-129 7-78 (89)
103 2cpe_A RNA-binding protein EWS 99.7 2.9E-17 9.9E-22 128.7 11.9 88 136-223 10-105 (113)
104 2cq3_A RNA-binding protein 9; 99.7 6.1E-17 2.1E-21 124.6 13.5 82 258-344 11-96 (103)
105 3s8s_A Histone-lysine N-methyl 99.7 1.7E-17 6E-22 128.7 10.4 77 260-341 4-86 (110)
106 2cqi_A Nucleolysin TIAR; RNA r 99.7 6E-17 2E-21 124.6 13.3 82 258-344 11-96 (103)
107 2dgp_A Bruno-like 4, RNA bindi 99.7 1.8E-17 6.2E-22 128.3 10.4 88 136-223 8-98 (106)
108 2jwn_A Embryonic polyadenylate 99.7 2.5E-18 8.6E-23 137.2 5.7 82 140-222 35-116 (124)
109 1oo0_B CG8781-PA, drosophila Y 99.7 2.1E-17 7.3E-22 128.8 10.6 85 138-222 23-107 (110)
110 2fy1_A RNA-binding motif prote 99.7 2.6E-17 8.8E-22 129.3 11.1 84 139-223 5-88 (116)
111 2dnq_A RNA-binding protein 4B; 99.7 5.7E-17 2E-21 121.4 12.6 78 260-344 6-83 (90)
112 2div_A TRNA selenocysteine ass 99.7 2E-17 6.9E-22 126.3 10.2 85 138-222 6-95 (99)
113 1x4a_A Splicing factor, argini 99.7 9.7E-17 3.3E-21 124.8 14.2 81 258-343 18-101 (109)
114 2cqp_A RNA-binding protein 12; 99.7 2.3E-17 7.9E-22 125.7 10.3 84 138-221 12-95 (98)
115 2dnz_A Probable RNA-binding pr 99.7 5.9E-17 2E-21 122.7 12.5 80 261-345 4-89 (95)
116 1x4d_A Matrin 3; structural ge 99.7 1.5E-17 5.2E-22 126.2 9.0 80 52-133 11-93 (102)
117 1wi8_A EIF-4B, eukaryotic tran 99.7 4.3E-17 1.5E-21 125.6 11.7 86 137-224 11-97 (104)
118 2cpz_A CUG triplet repeat RNA- 99.7 5E-17 1.7E-21 127.7 12.3 82 257-343 20-107 (115)
119 2hvz_A Splicing factor, argini 99.7 6.7E-18 2.3E-22 129.5 7.1 76 142-222 1-76 (101)
120 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.2E-17 2.1E-21 124.5 12.5 85 52-136 11-97 (103)
121 2lea_A Serine/arginine-rich sp 99.7 7E-18 2.4E-22 136.2 7.4 119 185-344 6-130 (135)
122 1whw_A Hypothetical protein ri 99.7 6.7E-17 2.3E-21 123.4 12.5 79 261-344 7-91 (99)
123 2cq3_A RNA-binding protein 9; 99.7 7.4E-17 2.5E-21 124.1 12.8 84 52-135 11-96 (103)
124 3s7r_A Heterogeneous nuclear r 99.7 3.9E-17 1.3E-21 121.5 10.8 81 137-218 7-87 (87)
125 1u6f_A Tcubp1, RNA-binding pro 99.7 4.1E-17 1.4E-21 132.9 11.8 88 137-224 38-125 (139)
126 1x4a_A Splicing factor, argini 99.7 1E-16 3.5E-21 124.7 13.5 84 52-135 18-102 (109)
127 2cqd_A RNA-binding region cont 99.7 4.6E-17 1.6E-21 128.1 11.7 87 136-223 12-98 (116)
128 2cq1_A PTB-like protein L; RRM 99.7 5.6E-17 1.9E-21 123.3 11.6 81 53-135 12-94 (101)
129 2la4_A Nuclear and cytoplasmic 99.7 1.6E-17 5.3E-22 127.4 8.7 75 261-340 26-100 (101)
130 2d9p_A Polyadenylate-binding p 99.7 5E-17 1.7E-21 125.1 11.4 85 52-136 11-97 (103)
131 2lxi_A RNA-binding protein 10; 99.7 8.8E-18 3E-22 125.8 6.9 80 56-135 1-86 (91)
132 2ywk_A Putative RNA-binding pr 99.7 3.2E-17 1.1E-21 124.2 10.0 83 137-220 12-94 (95)
133 2cpf_A RNA binding motif prote 99.7 4.4E-17 1.5E-21 124.2 10.7 80 261-345 4-92 (98)
134 1x4c_A Splicing factor, argini 99.7 1.6E-16 5.4E-21 123.2 14.0 79 260-344 13-96 (108)
135 1u6f_A Tcubp1, RNA-binding pro 99.7 1.4E-18 4.8E-23 141.7 2.4 83 53-135 39-125 (139)
136 3ucg_A Polyadenylate-binding p 99.7 3.8E-17 1.3E-21 122.2 10.1 80 141-221 6-85 (89)
137 2cph_A RNA binding motif prote 99.7 9E-17 3.1E-21 124.6 12.5 81 259-344 12-100 (107)
138 2e5j_A Methenyltetrahydrofolat 99.7 7.8E-17 2.7E-21 122.4 11.8 81 52-133 15-95 (97)
139 3ulh_A THO complex subunit 4; 99.7 5.9E-17 2E-21 125.6 11.2 83 136-219 24-106 (107)
140 2cq0_A Eukaryotic translation 99.7 6.1E-17 2.1E-21 124.6 11.2 81 259-344 12-98 (103)
141 2do4_A Squamous cell carcinoma 99.7 9.4E-17 3.2E-21 122.8 12.2 80 259-343 14-98 (100)
142 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.6E-17 1.2E-21 121.7 9.6 76 261-341 5-86 (87)
143 3n9u_C Cleavage and polyadenyl 99.7 2.7E-17 9.4E-22 135.9 9.8 81 140-220 54-136 (156)
144 2dhg_A TRNA selenocysteine ass 99.7 3.2E-17 1.1E-21 126.4 9.6 86 137-223 5-92 (104)
145 1x5u_A Splicing factor 3B subu 99.7 9.2E-17 3.2E-21 124.0 12.2 84 52-135 11-98 (105)
146 2err_A Ataxin-2-binding protei 99.7 3.6E-17 1.2E-21 127.1 9.9 81 52-132 25-107 (109)
147 2ad9_A Polypyrimidine tract-bi 99.7 4.4E-17 1.5E-21 126.9 10.3 83 52-136 27-111 (119)
148 1whx_A Hypothetical protein ri 99.7 3.8E-17 1.3E-21 127.2 10.0 76 262-342 10-85 (111)
149 1s79_A Lupus LA protein; RRM, 99.7 2E-17 6.7E-22 126.6 8.2 81 138-220 8-88 (103)
150 2do0_A HnRNP M, heterogeneous 99.7 1.5E-16 5.1E-21 124.8 13.5 85 137-222 11-95 (114)
151 2kxn_B Transformer-2 protein h 99.7 5E-17 1.7E-21 130.0 10.9 83 51-133 41-127 (129)
152 2dgs_A DAZ-associated protein 99.7 1.3E-16 4.3E-21 121.8 12.7 79 260-344 8-92 (99)
153 1wex_A Hypothetical protein (r 99.7 7.9E-17 2.7E-21 123.2 11.5 80 53-134 12-93 (104)
154 4a8x_A RNA-binding protein wit 99.7 3.7E-17 1.3E-21 121.9 9.5 82 141-222 4-86 (88)
155 2e5h_A Zinc finger CCHC-type a 99.7 6.2E-17 2.1E-21 122.3 10.8 76 259-339 13-94 (94)
156 2dh8_A DAZ-associated protein 99.7 4.1E-17 1.4E-21 126.0 9.9 86 137-223 12-97 (105)
157 2cq2_A Hypothetical protein LO 99.7 4.4E-17 1.5E-21 125.5 9.9 79 261-344 24-109 (114)
158 3md1_A Nuclear and cytoplasmic 99.7 5.7E-17 2E-21 119.4 10.2 74 263-341 2-81 (83)
159 2rs2_A Musashi-1, RNA-binding 99.7 5.5E-17 1.9E-21 125.9 10.6 86 137-223 21-106 (109)
160 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.6E-17 1.6E-21 120.5 9.7 74 261-339 6-85 (85)
161 2dgu_A Heterogeneous nuclear r 99.7 1.9E-16 6.7E-21 121.7 13.4 78 260-344 9-86 (103)
162 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.1E-17 1.7E-21 124.8 10.2 80 260-344 10-95 (102)
163 2ek1_A RNA-binding protein 12; 99.7 2.5E-17 8.5E-22 124.8 8.2 82 139-220 13-94 (95)
164 2dnh_A Bruno-like 5, RNA bindi 99.7 1.2E-16 4.1E-21 123.4 12.3 80 260-344 13-100 (105)
165 1x5s_A Cold-inducible RNA-bind 99.7 1.1E-16 3.8E-21 122.9 11.9 83 53-135 9-95 (102)
166 2dgv_A HnRNP M, heterogeneous 99.7 6.6E-17 2.2E-21 121.7 10.3 79 260-343 6-88 (92)
167 2kt5_A RNA and export factor-b 99.7 1.5E-16 5.2E-21 126.7 13.0 86 137-223 31-116 (124)
168 2cqg_A TDP-43, TAR DNA-binding 99.7 1.8E-16 6.2E-21 121.9 12.9 86 136-223 10-95 (103)
169 2dgt_A RNA-binding protein 30; 99.7 1.5E-16 5.3E-21 119.6 12.1 79 259-344 7-85 (92)
170 2dnm_A SRP46 splicing factor; 99.7 9.9E-17 3.4E-21 123.4 11.3 84 53-136 10-97 (103)
171 2jrs_A RNA-binding protein 39; 99.7 1.3E-16 4.6E-21 123.5 12.0 82 256-342 20-107 (108)
172 3pgw_S U1-70K; protein-RNA com 99.7 9.4E-18 3.2E-22 161.9 6.7 86 138-223 99-184 (437)
173 1p1t_A Cleavage stimulation fa 99.7 3.6E-17 1.2E-21 126.1 8.7 83 140-222 7-89 (104)
174 2dnq_A RNA-binding protein 4B; 99.7 1.3E-16 4.5E-21 119.4 11.5 80 53-136 5-84 (90)
175 2x1f_A MRNA 3'-END-processing 99.7 7.1E-17 2.4E-21 122.5 10.1 76 262-342 2-83 (96)
176 1x4e_A RNA binding motif, sing 99.7 1E-17 3.5E-22 124.1 5.3 81 139-219 3-83 (85)
177 2mss_A Protein (musashi1); RNA 99.7 2E-17 6.7E-22 119.4 6.6 75 143-218 1-75 (75)
178 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.2E-17 7.6E-22 126.2 7.3 83 137-221 15-98 (100)
179 2cqc_A Arginine/serine-rich sp 99.7 9.9E-17 3.4E-21 121.5 10.8 78 258-340 11-94 (95)
180 2dgw_A Probable RNA-binding pr 99.7 1.7E-16 5.7E-21 119.1 11.9 82 138-222 7-88 (91)
181 2khc_A Testis-specific RNP-typ 99.7 9.9E-17 3.4E-21 126.7 11.2 78 52-129 36-117 (118)
182 2m2b_A RNA-binding protein 10; 99.7 2.2E-17 7.6E-22 132.8 7.5 86 137-223 19-110 (131)
183 2dnp_A RNA-binding protein 14; 99.7 1.6E-16 5.4E-21 119.0 11.6 77 260-343 7-83 (90)
184 2ywk_A Putative RNA-binding pr 99.7 6.9E-17 2.3E-21 122.3 9.7 78 258-340 12-94 (95)
185 2dgx_A KIAA0430 protein; RRM d 99.7 9.6E-17 3.3E-21 121.6 10.4 81 139-222 7-91 (96)
186 2fy1_A RNA-binding motif prote 99.7 1.3E-16 4.3E-21 125.3 11.4 78 262-344 7-89 (116)
187 1p27_B RNA-binding protein 8A; 99.7 9E-17 3.1E-21 124.3 10.3 79 259-342 20-104 (106)
188 1why_A Hypothetical protein ri 99.7 2.2E-16 7.5E-21 120.0 12.2 79 53-133 14-94 (97)
189 2jvr_A Nucleolar protein 3; RN 99.7 4.4E-17 1.5E-21 126.0 8.4 80 53-132 25-105 (111)
190 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.4E-16 4.8E-21 132.4 12.1 86 138-223 36-121 (156)
191 1x4h_A RNA-binding protein 28; 99.7 2.1E-16 7.3E-21 123.3 12.4 84 52-135 11-104 (111)
192 1x4f_A Matrin 3; structural ge 99.7 8.2E-17 2.8E-21 123.9 9.8 81 52-134 21-104 (112)
193 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-16 3.8E-21 120.4 10.3 84 138-223 5-88 (92)
194 4a8x_A RNA-binding protein wit 99.7 7.8E-17 2.7E-21 120.2 9.4 79 55-133 3-86 (88)
195 3ex7_B RNA-binding protein 8A; 99.7 7.3E-17 2.5E-21 129.0 9.8 88 137-224 18-105 (126)
196 1sjr_A Polypyrimidine tract-bi 99.7 1.4E-16 4.8E-21 130.4 11.6 81 53-133 43-125 (164)
197 2xnq_A Nuclear polyadenylated 99.7 1.5E-16 5.2E-21 120.6 11.0 77 258-341 18-95 (97)
198 2err_A Ataxin-2-binding protei 99.7 5.9E-17 2E-21 125.8 8.9 80 257-341 24-107 (109)
199 1rk8_A CG8781-PA, CG8781-PA pr 99.7 8.2E-17 2.8E-21 135.0 10.3 136 188-343 11-154 (165)
200 2dgp_A Bruno-like 4, RNA bindi 99.7 2E-16 6.9E-21 122.3 11.7 81 258-343 9-98 (106)
201 1wf1_A RNA-binding protein RAL 99.7 1.5E-16 5.2E-21 123.9 11.0 97 119-223 5-102 (110)
202 2cpd_A Apobec-1 stimulating pr 99.7 3.7E-16 1.3E-20 119.2 13.0 80 259-343 12-91 (99)
203 1x5p_A Negative elongation fac 99.7 3.9E-16 1.3E-20 118.5 13.0 78 260-344 13-90 (97)
204 2a3j_A U1 small nuclear ribonu 99.7 1.3E-16 4.4E-21 126.6 10.6 77 260-341 27-110 (127)
205 2cpj_A Non-POU domain-containi 99.7 2.1E-16 7.3E-21 120.5 11.5 80 52-133 11-90 (99)
206 1x5t_A Splicing factor 3B subu 99.7 1.3E-16 4.3E-21 121.1 10.2 83 54-136 3-90 (96)
207 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3E-17 1E-21 119.1 6.4 76 142-218 1-76 (77)
208 2xnq_A Nuclear polyadenylated 99.7 1.4E-16 4.9E-21 120.8 10.3 77 53-133 19-96 (97)
209 2cqh_A IGF-II mRNA-binding pro 99.7 5.6E-17 1.9E-21 122.3 8.0 78 261-344 7-86 (93)
210 2cpi_A CCR4-NOT transcription 99.7 1.3E-16 4.5E-21 124.3 10.4 84 139-222 13-102 (111)
211 2la4_A Nuclear and cytoplasmic 99.7 3.2E-17 1.1E-21 125.7 6.7 77 53-131 24-100 (101)
212 2dhg_A TRNA selenocysteine ass 99.7 1.8E-16 6.1E-21 122.2 10.9 80 261-345 8-94 (104)
213 2jvo_A Nucleolar protein 3; nu 99.7 1.1E-16 3.9E-21 123.8 9.8 78 258-342 27-104 (108)
214 3p5t_L Cleavage and polyadenyl 99.7 2.6E-17 9E-22 123.2 6.0 78 263-343 2-85 (90)
215 2cqd_A RNA-binding region cont 99.7 2.8E-16 9.5E-21 123.7 12.1 86 51-137 12-101 (116)
216 2la6_A RNA-binding protein FUS 99.7 2.5E-16 8.6E-21 120.1 11.1 77 53-129 10-98 (99)
217 2dis_A Unnamed protein product 99.7 1.3E-16 4.3E-21 124.2 9.6 85 139-223 6-94 (109)
218 1x4b_A Heterogeneous nuclear r 99.7 1.9E-16 6.5E-21 124.6 10.7 84 139-223 25-108 (116)
219 2ki2_A SS-DNA binding protein 99.7 1.7E-17 5.9E-22 124.3 4.3 81 142-223 2-82 (90)
220 2jvo_A Nucleolar protein 3; nu 99.7 1.5E-16 5.1E-21 123.2 9.8 78 53-134 28-105 (108)
221 2e5j_A Methenyltetrahydrofolat 99.7 3.7E-16 1.3E-20 118.7 11.7 79 260-342 17-95 (97)
222 1oo0_B CG8781-PA, drosophila Y 99.7 2E-16 6.9E-21 123.2 10.4 79 259-342 23-107 (110)
223 2cpy_A RNA-binding protein 12; 99.7 1.2E-16 4.1E-21 125.2 9.1 83 137-221 11-94 (114)
224 1x4c_A Splicing factor, argini 99.7 3.9E-16 1.3E-20 121.0 11.9 80 53-135 12-96 (108)
225 1x4g_A Nucleolysin TIAR; struc 99.7 2.6E-16 8.7E-21 122.4 10.9 82 53-136 22-103 (109)
226 2ytc_A PRE-mRNA-splicing facto 99.7 2.4E-16 8.1E-21 116.7 10.1 76 53-130 9-85 (85)
227 1x5o_A RNA binding motif, sing 99.7 3E-16 1E-20 123.1 11.1 84 137-221 21-112 (114)
228 2cpi_A CCR4-NOT transcription 99.7 2.1E-16 7E-21 123.2 10.1 77 261-342 14-102 (111)
229 2cq4_A RNA binding motif prote 99.7 1.1E-16 3.9E-21 125.5 8.6 81 140-221 24-104 (114)
230 2cpe_A RNA-binding protein EWS 99.7 3.2E-16 1.1E-20 122.7 11.2 81 259-344 12-106 (113)
231 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.1E-16 7.1E-21 128.9 10.3 83 136-218 58-140 (140)
232 1wg5_A Heterogeneous nuclear r 99.7 2.8E-16 9.7E-21 120.9 10.4 83 138-222 12-95 (104)
233 2div_A TRNA selenocysteine ass 99.7 1.8E-16 6.1E-21 121.0 9.2 78 261-343 8-96 (99)
234 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-16 4E-21 123.5 8.1 76 262-341 28-105 (111)
235 2db1_A Heterogeneous nuclear r 99.7 2.3E-16 8E-21 124.2 10.0 81 138-220 14-97 (118)
236 1wez_A HnRNP H', FTP-3, hetero 99.7 1.8E-16 6.1E-21 121.3 9.0 82 138-222 12-93 (102)
237 2hgl_A HNRPF protein, heteroge 99.7 1.5E-16 5E-21 127.8 8.9 81 138-220 41-124 (136)
238 1wi8_A EIF-4B, eukaryotic tran 99.7 3.5E-16 1.2E-20 120.5 10.7 82 53-136 12-98 (104)
239 2dgt_A RNA-binding protein 30; 99.7 4.8E-16 1.6E-20 116.8 11.0 79 53-135 7-85 (92)
240 2fc9_A NCL protein; structure 99.7 5.9E-16 2E-20 118.5 11.7 83 137-223 11-93 (101)
241 1wf1_A RNA-binding protein RAL 99.7 5.2E-16 1.8E-20 120.8 11.5 76 261-343 26-102 (110)
242 2fc8_A NCL protein; structure 99.7 7.4E-16 2.5E-20 118.2 12.2 85 136-223 10-94 (102)
243 2m2b_A RNA-binding protein 10; 99.7 4.3E-16 1.5E-20 125.3 11.3 82 53-135 20-111 (131)
244 2a3j_A U1 small nuclear ribonu 99.7 3.3E-16 1.1E-20 124.2 10.5 80 54-133 27-111 (127)
245 3ucg_A Polyadenylate-binding p 99.7 2.5E-16 8.5E-21 117.7 9.2 74 262-341 6-85 (89)
246 2j76_E EIF-4B, EIF4B, eukaryot 99.7 9E-17 3.1E-21 122.8 6.8 78 53-132 16-98 (100)
247 3ex7_B RNA-binding protein 8A; 99.7 3.1E-16 1.1E-20 125.4 10.2 82 258-344 18-105 (126)
248 2dis_A Unnamed protein product 99.7 7.1E-16 2.4E-20 119.9 11.9 78 261-343 7-94 (109)
249 1nu4_A U1A RNA binding domain; 99.7 2.6E-16 9E-21 119.6 9.2 78 260-342 6-90 (97)
250 2e44_A Insulin-like growth fac 99.7 4.5E-16 1.5E-20 118.0 10.3 79 54-132 13-92 (96)
251 2dnp_A RNA-binding protein 14; 99.7 5.2E-16 1.8E-20 116.1 10.5 78 53-134 6-83 (90)
252 2kvi_A Nuclear polyadenylated 99.7 2.1E-16 7.3E-21 119.7 8.5 77 260-343 8-85 (96)
253 2nlw_A Eukaryotic translation 99.7 1.9E-16 6.5E-21 122.1 8.3 82 138-221 12-100 (105)
254 3ulh_A THO complex subunit 4; 99.7 4.1E-16 1.4E-20 120.8 10.3 76 259-339 26-106 (107)
255 2e5i_A Heterogeneous nuclear r 99.7 1.6E-15 5.5E-20 119.1 13.5 75 263-342 26-103 (124)
256 2dgu_A Heterogeneous nuclear r 99.7 7.2E-16 2.4E-20 118.5 11.3 79 53-135 8-86 (103)
257 2dng_A Eukaryotic translation 99.7 6.2E-16 2.1E-20 118.9 10.9 81 53-135 12-96 (103)
258 2fc9_A NCL protein; structure 99.7 8.6E-16 2.9E-20 117.6 11.5 81 259-344 12-94 (101)
259 2kt5_A RNA and export factor-b 99.7 1.3E-15 4.4E-20 121.3 12.8 81 259-344 32-117 (124)
260 1s79_A Lupus LA protein; RRM, 99.7 2.4E-16 8.2E-21 120.6 8.1 73 261-339 10-87 (103)
261 2kvi_A Nuclear polyadenylated 99.7 4.4E-16 1.5E-20 118.0 9.5 79 53-135 7-86 (96)
262 2diu_A KIAA0430 protein; struc 99.7 1.2E-15 4E-20 111.1 11.1 73 263-344 10-87 (96)
263 2cpd_A Apobec-1 stimulating pr 99.7 1.4E-15 4.8E-20 115.9 12.3 79 53-135 12-92 (99)
264 3ns6_A Eukaryotic translation 99.7 2E-16 6.9E-21 120.7 7.5 74 262-340 6-92 (100)
265 2cq4_A RNA binding motif prote 99.6 2.9E-16 1E-20 123.1 8.6 80 53-133 22-105 (114)
266 2cpx_A Hypothetical protein FL 99.6 1.3E-15 4.3E-20 119.7 12.2 84 53-136 22-109 (115)
267 3n9u_C Cleavage and polyadenyl 99.6 3.3E-16 1.1E-20 129.4 9.2 79 54-132 53-137 (156)
268 1p1t_A Cleavage stimulation fa 99.6 1.4E-16 4.9E-21 122.7 6.5 76 261-341 7-88 (104)
269 1wel_A RNA-binding protein 12; 99.6 1.5E-16 5E-21 126.7 6.7 82 138-220 22-103 (124)
270 2hgn_A Heterogeneous nuclear r 99.6 8.5E-17 2.9E-21 129.6 5.2 123 95-222 2-124 (139)
271 1x4e_A RNA binding motif, sing 99.6 1.5E-16 5.2E-21 117.7 6.1 78 53-130 2-83 (85)
272 2dh8_A DAZ-associated protein 99.6 9.8E-16 3.4E-20 118.2 11.0 83 52-135 12-98 (105)
273 2dnn_A RNA-binding protein 12; 99.6 6.5E-16 2.2E-20 119.1 9.8 77 141-220 16-92 (109)
274 3s7r_A Heterogeneous nuclear r 99.6 6.1E-16 2.1E-20 114.9 9.3 77 52-129 7-87 (87)
275 1iqt_A AUF1, heterogeneous nuc 99.6 8.2E-17 2.8E-21 116.1 4.4 75 143-218 1-75 (75)
276 2cqp_A RNA-binding protein 12; 99.6 6.1E-16 2.1E-20 117.8 9.3 80 53-132 12-95 (98)
277 1fj7_A Nucleolin RBD1, protein 99.6 6.6E-17 2.3E-21 123.9 3.9 83 138-222 14-96 (101)
278 2krb_A Eukaryotic translation 99.6 1.2E-16 4E-21 117.1 5.1 72 142-215 2-80 (81)
279 2cqh_A IGF-II mRNA-binding pro 99.6 5.1E-16 1.8E-20 116.9 8.6 80 53-135 5-86 (93)
280 2lmi_A GRSF-1, G-rich sequence 99.6 2.2E-16 7.7E-21 122.1 6.5 81 138-220 8-91 (107)
281 1x5o_A RNA binding motif, sing 99.6 1.8E-15 6.1E-20 118.6 11.7 77 260-341 23-112 (114)
282 2cpx_A Hypothetical protein FL 99.6 2E-15 6.8E-20 118.6 11.8 80 260-344 23-108 (115)
283 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-15 4E-20 124.9 10.8 76 262-342 46-125 (164)
284 3q2s_C Cleavage and polyadenyl 99.6 3.2E-16 1.1E-20 138.2 8.1 81 140-220 67-149 (229)
285 1nu4_A U1A RNA binding domain; 99.6 3.7E-16 1.3E-20 118.8 7.2 82 138-222 5-90 (97)
286 2diu_A KIAA0430 protein; struc 99.6 2.3E-15 7.9E-20 109.6 10.9 76 55-136 7-88 (96)
287 2cqg_A TDP-43, TAR DNA-binding 99.6 3E-15 1E-19 115.1 12.4 79 259-344 12-96 (103)
288 2j8a_A Histone-lysine N-methyl 99.6 5.8E-16 2E-20 119.3 8.1 79 142-220 3-95 (136)
289 2nlw_A Eukaryotic translation 99.6 8.8E-16 3E-20 118.3 9.2 75 262-341 15-100 (105)
290 2e5g_A U6 snRNA-specific termi 99.6 1.9E-15 6.5E-20 114.0 10.7 76 262-343 8-84 (94)
291 1wg1_A KIAA1579 protein, homol 99.6 9.4E-16 3.2E-20 114.1 8.9 75 262-342 5-79 (88)
292 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-15 5E-20 119.7 10.3 80 53-133 25-107 (130)
293 2rs2_A Musashi-1, RNA-binding 99.6 8.5E-16 2.9E-20 119.2 8.9 82 52-134 21-106 (109)
294 2e5i_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 116.9 12.7 79 53-133 22-103 (124)
295 1x5p_A Negative elongation fac 99.6 3.3E-15 1.1E-19 113.4 12.0 81 52-136 11-91 (97)
296 3zzy_A Polypyrimidine tract-bi 99.6 1.6E-15 5.5E-20 119.5 10.4 76 262-342 28-107 (130)
297 1whx_A Hypothetical protein ri 99.6 1.1E-15 3.9E-20 118.8 9.4 76 55-132 9-84 (111)
298 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.6E-15 5.5E-20 125.9 10.9 78 260-342 37-120 (156)
299 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.3E-15 8E-20 122.6 11.5 76 258-338 59-140 (140)
300 1fjc_A Nucleolin RBD2, protein 99.6 8.2E-16 2.8E-20 116.6 8.2 81 137-222 12-92 (96)
301 2ki2_A SS-DNA binding protein 99.6 1.6E-16 5.4E-21 119.0 4.0 76 263-344 2-83 (90)
302 2ek1_A RNA-binding protein 12; 99.6 6.3E-16 2.2E-20 117.0 7.3 77 54-130 13-93 (95)
303 1x4b_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 119.9 9.3 77 261-343 26-108 (116)
304 2lcw_A RNA-binding protein FUS 99.4 3.1E-17 1.1E-21 129.1 0.0 86 138-223 4-97 (116)
305 2e44_A Insulin-like growth fac 99.6 3.2E-15 1.1E-19 113.2 11.0 76 261-341 14-92 (96)
306 3beg_B Splicing factor, argini 99.6 2E-15 6.8E-20 118.3 9.9 75 261-341 15-94 (115)
307 2cpy_A RNA-binding protein 12; 99.6 1E-15 3.6E-20 119.8 8.2 80 52-132 11-94 (114)
308 2fc8_A NCL protein; structure 99.6 3.2E-15 1.1E-19 114.6 10.8 80 260-344 13-95 (102)
309 2dgw_A Probable RNA-binding pr 99.6 2.8E-15 9.4E-20 112.4 9.9 79 53-133 7-88 (91)
310 2xs2_A Deleted in azoospermia- 99.6 4.9E-16 1.7E-20 119.2 5.9 82 139-223 7-88 (102)
311 2mss_A Protein (musashi1); RNA 99.6 1E-15 3.5E-20 110.3 7.2 71 58-129 1-75 (75)
312 1fj7_A Nucleolin RBD1, protein 99.6 3.1E-15 1.1E-19 114.5 10.3 78 261-342 16-96 (101)
313 2dha_A FLJ20171 protein; RRM d 99.6 7.8E-16 2.7E-20 121.3 7.1 79 140-220 22-104 (123)
314 2jwn_A Embryonic polyadenylate 99.6 1.6E-15 5.3E-20 120.9 8.9 76 262-343 36-117 (124)
315 2krb_A Eukaryotic translation 99.6 6.7E-16 2.3E-20 113.0 6.2 69 263-336 2-81 (81)
316 1uaw_A Mouse-musashi-1; RNP-ty 99.6 9E-16 3.1E-20 111.2 6.8 72 57-129 1-76 (77)
317 2cq2_A Hypothetical protein LO 99.6 1.6E-15 5.6E-20 116.7 8.5 78 53-132 22-106 (114)
318 3pgw_S U1-70K; protein-RNA com 99.6 3.5E-16 1.2E-20 150.9 5.8 76 261-341 101-182 (437)
319 1fjc_A Nucleolin RBD2, protein 99.6 3.9E-15 1.3E-19 112.8 10.1 79 259-342 13-92 (96)
320 2f3j_A RNA and export factor b 99.6 2.5E-15 8.6E-20 126.9 9.8 83 138-221 85-167 (177)
321 2bz2_A Negative elongation fac 99.6 2.6E-15 9E-20 118.5 9.2 76 260-342 37-112 (121)
322 1wg5_A Heterogeneous nuclear r 99.6 5.7E-15 1.9E-19 113.5 10.7 80 53-133 12-95 (104)
323 2e5g_A U6 snRNA-specific termi 99.6 5.8E-15 2E-19 111.3 10.5 79 53-134 5-84 (94)
324 3d2w_A TAR DNA-binding protein 99.6 3.8E-15 1.3E-19 110.8 9.3 76 259-341 8-84 (89)
325 2db1_A Heterogeneous nuclear r 99.6 2.1E-15 7.1E-20 118.7 8.2 78 53-131 14-97 (118)
326 1wg1_A KIAA1579 protein, homol 99.6 4.6E-15 1.6E-19 110.4 9.7 76 140-222 4-79 (88)
327 3u1l_A PRE-mRNA-splicing facto 99.6 2.3E-15 8E-20 131.7 9.2 77 261-342 133-230 (240)
328 2hgm_A HNRPF protein, heteroge 99.6 1.2E-15 4E-20 120.5 6.6 79 139-220 40-120 (126)
329 1wez_A HnRNP H', FTP-3, hetero 99.6 3.7E-15 1.3E-19 113.9 9.3 80 52-133 11-93 (102)
330 1wel_A RNA-binding protein 12; 99.6 3.9E-15 1.3E-19 118.4 8.7 78 53-131 22-103 (124)
331 2hzc_A Splicing factor U2AF 65 99.6 5.6E-15 1.9E-19 109.7 9.1 73 261-337 5-86 (87)
332 3egn_A RNA-binding protein 40; 99.6 1.9E-15 6.7E-20 123.5 6.5 86 138-223 42-132 (143)
333 2hgl_A HNRPF protein, heteroge 99.6 3.2E-15 1.1E-19 120.0 7.4 79 52-131 40-124 (136)
334 2pe8_A Splicing factor 45; RRM 99.6 1.6E-14 5.5E-19 110.6 10.8 82 139-220 6-93 (105)
335 2lmi_A GRSF-1, G-rich sequence 99.6 3.7E-15 1.3E-19 115.2 7.3 78 53-131 8-91 (107)
336 3beg_B Splicing factor, argini 99.6 6.6E-15 2.3E-19 115.3 8.5 70 55-127 15-84 (115)
337 1iqt_A AUF1, heterogeneous nuc 99.6 3.2E-15 1.1E-19 107.7 6.1 71 58-129 1-75 (75)
338 3d2w_A TAR DNA-binding protein 99.6 7.3E-15 2.5E-19 109.3 8.2 76 53-133 8-85 (89)
339 2bz2_A Negative elongation fac 99.6 1.3E-14 4.4E-19 114.5 10.0 79 52-134 35-113 (121)
340 2voo_A Lupus LA protein; RNA-b 99.6 1.2E-14 4.2E-19 124.6 10.6 117 103-221 63-187 (193)
341 2dnn_A RNA-binding protein 12; 99.6 9.3E-15 3.2E-19 112.6 8.7 72 261-339 15-91 (109)
342 2hzc_A Splicing factor U2AF 65 99.6 7.7E-15 2.6E-19 109.0 7.9 72 54-128 4-86 (87)
343 2f3j_A RNA and export factor b 99.6 1.5E-14 5.2E-19 122.1 10.3 82 52-133 84-168 (177)
344 1wf0_A TDP-43, TAR DNA-binding 99.6 5.7E-15 2E-19 109.9 6.7 75 262-343 5-80 (88)
345 3egn_A RNA-binding protein 40; 99.5 1.5E-14 5.2E-19 118.1 9.7 78 260-342 43-131 (143)
346 2dnl_A Cytoplasmic polyadenyla 99.5 2.2E-14 7.5E-19 112.2 10.0 77 139-218 6-85 (114)
347 1wf0_A TDP-43, TAR DNA-binding 99.5 6.1E-15 2.1E-19 109.7 6.1 79 54-135 3-81 (88)
348 2xs2_A Deleted in azoospermia- 99.5 4.5E-15 1.5E-19 113.8 5.4 75 260-341 7-86 (102)
349 2lcw_A RNA-binding protein FUS 99.3 5.5E-16 1.9E-20 121.9 0.0 77 261-342 6-96 (116)
350 2hgn_A Heterogeneous nuclear r 99.5 7.8E-15 2.7E-19 118.1 5.9 80 52-133 42-124 (139)
351 3q2s_C Cleavage and polyadenyl 99.5 2.1E-14 7.2E-19 126.5 8.5 78 55-132 67-150 (229)
352 2hgm_A HNRPF protein, heteroge 99.5 2.3E-14 7.8E-19 113.0 7.6 77 53-131 39-120 (126)
353 2dha_A FLJ20171 protein; RRM d 99.5 1.9E-14 6.7E-19 113.2 7.0 76 54-130 21-103 (123)
354 2pe8_A Splicing factor 45; RRM 99.5 1E-13 3.4E-18 106.1 9.7 75 261-340 7-93 (105)
355 2dit_A HIV TAT specific factor 99.5 2.4E-13 8E-18 105.9 11.3 83 52-134 11-104 (112)
356 2voo_A Lupus LA protein; RNA-b 99.5 2.4E-13 8.1E-18 116.5 11.8 73 263-341 110-187 (193)
357 3v4m_A Splicing factor U2AF 65 99.5 1.9E-13 6.4E-18 104.7 9.6 82 139-220 3-96 (105)
358 3u1l_A PRE-mRNA-splicing facto 99.5 8.1E-14 2.8E-18 122.0 8.3 79 53-133 131-230 (240)
359 3ue2_A Poly(U)-binding-splicin 99.5 2E-13 6.9E-18 106.5 9.4 81 140-220 19-108 (118)
360 2j8a_A Histone-lysine N-methyl 99.4 8E-14 2.7E-18 107.5 5.9 73 263-340 3-95 (136)
361 2dnl_A Cytoplasmic polyadenyla 99.4 2.1E-13 7.3E-18 106.5 8.4 74 53-129 5-85 (114)
362 2dit_A HIV TAT specific factor 99.4 8.9E-13 3E-17 102.6 11.6 78 260-342 13-103 (112)
363 3v4m_A Splicing factor U2AF 65 99.4 5.4E-13 1.8E-17 102.1 8.8 74 261-339 4-95 (105)
364 1jmt_A Splicing factor U2AF 35 99.4 1.5E-13 5.3E-18 105.0 5.5 72 146-218 20-103 (104)
365 3tht_A Alkylated DNA repair pr 99.4 6.3E-13 2.1E-17 122.7 9.7 80 259-340 15-98 (345)
366 2d9o_A DNAJ (HSP40) homolog, s 99.4 4.7E-12 1.6E-16 95.5 12.6 74 263-343 11-92 (100)
367 3ue2_A Poly(U)-binding-splicin 99.4 1.7E-12 6E-17 101.1 8.7 74 261-339 19-107 (118)
368 3s6e_A RNA-binding protein 39; 99.3 4.1E-12 1.4E-16 98.3 9.3 79 53-131 4-92 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.9E-11 9.9E-16 91.1 12.3 76 56-134 10-92 (100)
370 1jmt_A Splicing factor U2AF 35 99.3 1.1E-12 3.9E-17 100.2 4.5 67 267-338 20-103 (104)
371 3s6e_A RNA-binding protein 39; 99.3 7.9E-12 2.7E-16 96.7 8.8 74 261-339 6-91 (114)
372 3tht_A Alkylated DNA repair pr 99.2 1.1E-11 3.8E-16 114.4 8.5 76 53-130 15-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 9.5E-11 3.2E-15 84.5 8.2 74 259-340 4-85 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 1.8E-10 6.3E-15 88.9 9.8 75 258-337 14-92 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.0 6.6E-10 2.3E-14 80.1 7.9 74 139-221 5-86 (91)
376 1ufw_A Synaptojanin 2; RNP dom 99.0 4.3E-10 1.5E-14 81.4 6.7 74 258-339 11-93 (95)
377 1owx_A Lupus LA protein, SS-B, 99.0 1E-09 3.5E-14 84.8 8.4 75 53-129 15-93 (121)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 2.7E-09 9.2E-14 77.3 5.8 73 139-220 13-94 (95)
379 3dxb_A Thioredoxin N-terminall 98.9 1.2E-08 4E-13 89.6 11.0 66 154-219 142-211 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.7 4.9E-08 1.7E-12 71.9 8.1 70 263-337 22-96 (117)
381 3dxb_A Thioredoxin N-terminall 98.6 4.7E-08 1.6E-12 85.7 7.7 61 274-339 141-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.5 6.4E-07 2.2E-11 66.1 8.4 71 55-127 20-95 (117)
383 1wey_A Calcipressin 1; structu 98.3 2.3E-06 8E-11 63.1 8.6 73 263-340 6-83 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.3 7.1E-06 2.4E-10 60.1 10.9 90 53-154 5-99 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.3 2.6E-05 9E-10 57.1 13.1 72 263-340 9-83 (104)
386 1wey_A Calcipressin 1; structu 97.7 0.00026 8.8E-09 52.2 9.0 73 142-220 6-83 (104)
387 1whv_A Poly(A)-specific ribonu 97.7 0.00021 7.1E-09 51.7 7.9 58 53-115 13-70 (100)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.00017 5.7E-09 52.3 7.4 65 57-121 2-72 (91)
389 1whv_A Poly(A)-specific ribonu 97.4 0.00081 2.8E-08 48.6 8.0 54 263-321 17-70 (100)
390 1uw4_A UPF3X; nonsense mediate 97.3 0.00052 1.8E-08 49.7 6.4 59 263-323 2-68 (91)
391 3ctr_A Poly(A)-specific ribonu 97.2 0.00039 1.3E-08 50.4 4.8 53 59-115 8-60 (101)
392 1wwh_A Nucleoporin 35, nucleop 97.1 0.0023 8E-08 48.5 8.3 71 262-339 24-95 (119)
393 2l08_A Regulator of nonsense t 97.0 0.00066 2.3E-08 49.4 4.0 66 56-121 9-80 (97)
394 1wwh_A Nucleoporin 35, nucleop 96.9 0.003 1E-07 47.9 7.4 70 56-129 24-94 (119)
395 3ctr_A Poly(A)-specific ribonu 96.9 0.0012 4E-08 47.9 4.6 54 263-321 7-60 (101)
396 3pq1_A Poly(A) RNA polymerase; 96.1 0.0033 1.1E-07 60.0 3.9 55 56-112 53-107 (464)
397 2l08_A Regulator of nonsense t 96.1 0.0037 1.3E-07 45.5 3.1 59 263-323 10-76 (97)
398 3pq1_A Poly(A) RNA polymerase; 95.9 0.0039 1.3E-07 59.5 3.2 53 263-318 54-107 (464)
399 3p3d_A Nucleoporin 53; structu 95.7 0.01 3.5E-07 45.6 4.2 71 57-129 8-96 (132)
400 3p3d_A Nucleoporin 53; structu 95.2 0.039 1.3E-06 42.4 6.0 76 142-219 8-97 (132)
401 3d45_A Poly(A)-specific ribonu 88.6 1.3 4.5E-05 43.0 8.4 55 57-116 441-495 (507)
402 3d45_A Poly(A)-specific ribonu 87.3 2.2 7.7E-05 41.4 9.2 57 262-323 440-496 (507)
403 2g0c_A ATP-dependent RNA helic 73.3 11 0.00036 25.7 6.2 70 264-339 2-75 (76)
404 4eyt_A Telomerase associated p 56.6 48 0.0016 23.1 8.4 56 263-322 13-68 (129)
405 2g0c_A ATP-dependent RNA helic 50.6 53 0.0018 22.0 6.4 58 67-129 12-74 (76)
406 4e8u_A Putative uncharacterize 49.0 31 0.001 27.8 5.4 48 264-311 14-73 (172)
407 2cu1_A Mitogen-activated prote 41.4 96 0.0033 22.3 6.4 64 269-340 23-87 (103)
408 3fry_A Probable copper-exporti 39.4 77 0.0026 20.6 6.2 54 263-319 7-60 (73)
409 4e8u_A Putative uncharacterize 32.3 81 0.0028 25.3 5.4 55 143-200 14-80 (172)
410 3lpe_A Putative transcription 32.2 1.1E+02 0.0039 21.4 5.8 45 278-323 28-73 (92)
411 4a4j_A Pacszia, cation-transpo 29.7 1E+02 0.0035 19.4 5.0 54 263-318 4-60 (69)
412 3j21_T 50S ribosomal protein L 28.6 92 0.0031 21.8 4.6 55 265-319 25-82 (86)
413 4eyt_A Telomerase associated p 26.5 1.6E+02 0.0056 20.4 8.5 56 55-114 11-66 (129)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=6.3e-46 Score=342.88 Aligned_cols=238 Identities=21% Similarity=0.326 Sum_probs=217.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCC
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (428)
++++|||+|||.++|+++|+++|+.|| |.+|++ .+++|||||+|.+.++|.+|+..+++..+.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 457899999999999999999999999 988888 5567899999999999999999999999999999999864
Q ss_pred ccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 135 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
..++|||+|||.++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|++.+++..+.|+.|.
T Consensus 94 -----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 94 -----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp -----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred -----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 336999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCccc-CHHHHHHHHhccCCeeEEE
Q 014230 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV-TQLDLHRHFHSLGAGVIEE 293 (428)
Q Consensus 215 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~~~i~~ 293 (428)
|.++.++.... .....++|||+|||.++ |+++|+++|+.|| .|.+
T Consensus 169 v~~a~~~~~~~--------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G--~i~~ 214 (284)
T 3smz_A 169 VHWTDAGQLTP--------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVH--SPTF 214 (284)
T ss_dssp EEECCGGGCCT--------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSS--CCSE
T ss_pred EEECCCCCCCc--------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCC--CeEE
Confidence 99987642211 11234789999999996 9999999999999 8989
Q ss_pred EEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 294 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 294 i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
+++.++ +|+|||+|.+.++|.+|+..|||. .++|++|+|+|++.+
T Consensus 215 v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 215 CQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL---SLGGSHLRVSFCAPG 264 (284)
T ss_dssp EEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC---EETTEECEEEECCSS
T ss_pred EEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC---ccCCeEEEEEEecCC
Confidence 988876 799999999999999999999999 999999999998754
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=7.5e-45 Score=337.04 Aligned_cols=244 Identities=15% Similarity=0.217 Sum_probs=208.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
.+.+.++|||+|||.++|+++|+++|+.||.|.+|+++.+. ++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEEC
Confidence 45667899999999999999999999999999999999864 3599999999999999999 49999999999999986
Q ss_pred cccCCccCCCCcceeEecCCCcccCHHHHHHHhccCC-CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014230 130 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (428)
Q Consensus 130 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 208 (428)
..++|||+|||.++++++|+++|+.|| .|.++.+..++. +.++|||||+|.+.++|.+|+..|++..+
T Consensus 116 ----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 184 (292)
T 2ghp_A 116 ----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI 184 (292)
T ss_dssp ----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred ----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 346999999999999999999999999 999999998854 78999999999999999999999999999
Q ss_pred CCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcc-cCHHHHHHHHhccC
Q 014230 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLG 287 (428)
Q Consensus 209 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G 287 (428)
.|+.|.|.++.+....... .......++|||+|||.+ +|+++|+++|+.||
T Consensus 185 ~g~~l~v~~a~~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp TTEECEEEECCCC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred CCcEEEEEECCCCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 9999999998764332111 012234478999999999 99999999999999
Q ss_pred CeeEEEEEEeCC-------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 288 AGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 288 ~~~i~~i~i~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
.|.+|++.++ +|||||+|.+.++|.+|+ .|||. .|+|++|+|.|++++
T Consensus 237 --~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~---~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 237 --SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS---LLGNREISVSLADKK 291 (292)
T ss_dssp --CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE---EETTEEEEEEECCCC
T ss_pred --CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC---EECCcEEEEEEecCC
Confidence 9999999654 689999999999999999 99999 999999999999864
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=6.1e-34 Score=250.77 Aligned_cols=164 Identities=27% Similarity=0.437 Sum_probs=147.7
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
.+.++|||+|||+++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeC
Q 014230 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (428)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~ 298 (428)
........ ...++|||+|||+++|+++|+++|+.|| .|.+|++.+
T Consensus 93 ~~~~~~~~---------------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~ 137 (213)
T 4f02_A 93 QRDPSLRK---------------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVC 137 (213)
T ss_dssp CCCTHHHH---------------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEE
T ss_pred cccccccc---------------------------------cccccceECCcccccHHHHHHHHHhhcC--CeEEEEeec
Confidence 65321100 0115799999999999999999999999 899999886
Q ss_pred C----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 299 D----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 299 ~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
+ +|||||+|.+.++|.+|++.|||. .|+|++|+|.|++.
T Consensus 138 d~~~~~g~~fV~f~~~~~a~~Ai~~lng~---~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 138 DENGSKGYGFVHFETQEAAERAIEKMNGM---LLNDRKVFVGRFKS 180 (213)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEEEECCC
T ss_pred cCCCCceEEEEEeCCHHHHHHHHHHhCCC---EECCEEEEEEEcCC
Confidence 5 789999999999999999999999 99999999999875
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-33 Score=235.71 Aligned_cols=162 Identities=41% Similarity=0.796 Sum_probs=151.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccC
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (428)
|+|||+|||.++|+++|+++|+.||.|.+|+++.++ ++|||||+|.+.++|.+|+..+++..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 689999999999999999999999999999998775 35899999999999999999999999999999999987665
Q ss_pred CccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 014230 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (428)
Q Consensus 134 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i 213 (428)
. ....+.++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|+..|+|..++|+.|
T Consensus 81 ~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 81 Q-SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp C-CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred C-CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 4 334566799999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEEcc
Q 014230 214 RCNWAT 219 (428)
Q Consensus 214 ~v~~~~ 219 (428)
+|.|++
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.3e-33 Score=247.09 Aligned_cols=166 Identities=28% Similarity=0.528 Sum_probs=148.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
..+.++|||+|||.++|+++|+++|++||.|.+|++++++. +|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 44668999999999999999999999999999999998753 58999999999999999999999999999999998
Q ss_pred ccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014230 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (428)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 208 (428)
+....... .....+|||+|||.++++++|+++|+.||.|.+++|++|. +.++|||||+|.+.++|.+|++.|||..+
T Consensus 92 ~~~~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 92 SQRDPSLR-KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCCCTHHH-HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cccccccc-ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 86544322 2234689999999999999999999999999999999884 45899999999999999999999999999
Q ss_pred CCeeEEEEEccCC
Q 014230 209 GSRQIRCNWATKG 221 (428)
Q Consensus 209 ~g~~i~v~~~~~~ 221 (428)
+|+.|+|.++.++
T Consensus 169 ~g~~i~V~~a~~~ 181 (213)
T 4f02_A 169 NDRKVFVGRFKSR 181 (213)
T ss_dssp TTEECEEEECCCH
T ss_pred CCEEEEEEEcCCC
Confidence 9999999998764
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=5e-33 Score=245.94 Aligned_cols=176 Identities=22% Similarity=0.426 Sum_probs=148.5
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
..++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 34799999999999999999999999999999999998899999999999999999999999999999999999998765
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~ 299 (428)
......... .... ......++|||+|||.++|+++|+++|++|| .|.++++.++
T Consensus 107 ~~~~~~~~~-----~~~~-------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~ 160 (216)
T 2qfj_A 107 NIGQAQPII-----DQLA-------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFG--KIKSATLARD 160 (216)
T ss_dssp CCGGGHHHH-----HHHH-------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSS--CEEEEEEEEC
T ss_pred Cccccchhh-----hhhh-------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccC--CeeEEEEEec
Confidence 432110000 0000 0112237899999999999999999999999 9999999876
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCCC
Q 014230 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPP 344 (428)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 344 (428)
+|||||+|.+.++|.+|++.|||. .|+|+.|+|.|++.+..+
T Consensus 161 ~~~g~~~g~afV~F~~~~~A~~A~~~l~g~---~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 161 PTTGKHKGYGFIEYEKAQSSQDAVSSMNLF---DLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTC---BCSSSBCEEEECSSCSST
T ss_pred CCCCCcCceEEEEecCHHHHHHHHHHccCC---EeCCcEEEEEEecCCCCC
Confidence 789999999999999999999999 999999999999876444
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3e-32 Score=231.03 Aligned_cols=161 Identities=27% Similarity=0.483 Sum_probs=149.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
++++|||+|||.++|+++|+++|+.||.|.+|++++++. +|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 457899999999999999999999999999999998753 4899999999999999999999999999999999987
Q ss_pred ccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014230 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (428)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 210 (428)
+... ....++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+.|
T Consensus 82 ~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 82 PGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCSS---TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCcc---cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 6543 3456799999999999999999999999999999999998899999999999999999999999999999977
Q ss_pred --eeEEEEEc
Q 014230 211 --RQIRCNWA 218 (428)
Q Consensus 211 --~~i~v~~~ 218 (428)
++|+|+|+
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999885
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.1e-32 Score=240.84 Aligned_cols=169 Identities=23% Similarity=0.439 Sum_probs=152.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
.+.++|||+|||.++|+++|+++|+.||.|.+|++++++ .+|||||+|.+.++|.+|++.+++..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 345789999999999999999999999999999998765 5689999999999999999999999999999999987
Q ss_pred cccCCcc--------CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 014230 130 YASGQRE--------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201 (428)
Q Consensus 130 ~~~~~~~--------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 201 (428)
....... .....++|||+|||.++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6554321 22456799999999999999999999999999999999998899999999999999999999999
Q ss_pred HhCCceeCCeeEEEEEccCCC
Q 014230 202 DLTGKWLGSRQIRCNWATKGA 222 (428)
Q Consensus 202 ~l~~~~~~g~~i~v~~~~~~~ 222 (428)
.|++..++|+.|+|.|+....
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999999988754
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-32 Score=229.48 Aligned_cols=160 Identities=24% Similarity=0.481 Sum_probs=144.8
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
++|||+|||.++++++|+++|+.||.|.++.+.+++ +++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999885 5789999999999999999999999999999999999998654
Q ss_pred CCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC--
Q 014230 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 299 (428)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-- 299 (428)
... .....++|||+|||.++|+++|+++|+.|| .|.++.+.++
T Consensus 80 ~~~---------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~ 124 (166)
T 3md3_A 80 QQS---------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWDMQ 124 (166)
T ss_dssp CCC---------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTST--TEEEEEEEECTT
T ss_pred CCC---------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccC--CeeEEEEEecCC
Confidence 321 122347899999999999999999999999 8999999865
Q ss_pred ----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 300 ----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 300 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
+|+|||+|.+.++|.+|++.|||. .++|++|+|+|++.
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQ---DLNGRPLRINWAAK 166 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHTTC---EETTEECEEEESCC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCC---ccCCcEEEEEecCC
Confidence 689999999999999999999999 99999999999863
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.2e-32 Score=229.60 Aligned_cols=159 Identities=31% Similarity=0.488 Sum_probs=146.3
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
+.++|||+|||.++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~ 299 (428)
+.... ...++|||+|||.++++++|+++|++|| .|.++.+.++
T Consensus 82 ~~~~~-----------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~ 124 (168)
T 1b7f_A 82 PGGES-----------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG--SIVQKNILRD 124 (168)
T ss_dssp CCSST-----------------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSS--CEEEEEEEEC
T ss_pred CCccc-----------------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCC--cEEEEEEEEc
Confidence 54321 1236899999999999999999999999 8999998876
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhcCCCcccccC--eeEEEeeC
Q 014230 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWG 338 (428)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a 338 (428)
+|+|||+|.+.++|.+|++.|||. .+.| ++|+|+|+
T Consensus 125 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 125 KLTGRPRGVAFVRYNKREEAQEAISALNNV---IPEGGSQPLSVRLA 168 (168)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTC---CCTTCSSCCEEEEC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhcCC---EecCCCeEEEEEeC
Confidence 489999999999999999999999 8977 99999986
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5.7e-32 Score=235.40 Aligned_cols=171 Identities=19% Similarity=0.369 Sum_probs=147.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
.+...++|||+|||.++|+++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 355678999999999999999999999999999999998754 57999999999999999975 8899999999999
Q ss_pred cccccCCcc---CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 014230 128 WAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204 (428)
Q Consensus 128 ~~~~~~~~~---~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 204 (428)
++....... .....++|||+|||.++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|+.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 987654322 234558999999999999999999999999999999999988999999999999999999999985 8
Q ss_pred CceeCCeeEEEEEccCCCCC
Q 014230 205 GKWLGSRQIRCNWATKGAGN 224 (428)
Q Consensus 205 ~~~~~g~~i~v~~~~~~~~~ 224 (428)
+..++|+.|.|.++.++...
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CCEETTEECEEEECC-----
T ss_pred CcEECCEEEEEEecCChhHh
Confidence 99999999999999876543
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.1e-31 Score=227.32 Aligned_cols=158 Identities=28% Similarity=0.464 Sum_probs=144.5
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
.++|||+|||+++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-
Q 014230 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (428)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~- 299 (428)
.... ...++|||+|||.++++++|+++|++|| .|.++++.++
T Consensus 82 ~~~~-----------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~ 124 (167)
T 1fxl_A 82 SSAS-----------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQ 124 (167)
T ss_dssp CCGG-----------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECT
T ss_pred Cccc-----------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcC--CEeEEEEEecC
Confidence 3211 1126899999999999999999999999 8999988765
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee--EEEeeC
Q 014230 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ--MKCSWG 338 (428)
Q Consensus 300 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~--l~v~~a 338 (428)
+|+|||+|.+.++|.+|++.|||. .++|+. |+|+||
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQ---KPSGATEPITVKFA 167 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTC---CCTTCSSCCEEEEC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCC---ccCCCccceEEEeC
Confidence 689999999999999999999999 899965 889885
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.6e-31 Score=226.29 Aligned_cols=160 Identities=33% Similarity=0.541 Sum_probs=147.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
.++|||+|||.++|+++|+++|+.||.|.+|++++++. +|||||+|.+.++|.+|++.+++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999998763 48999999999999999999999999999999999876
Q ss_pred cCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014230 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (428)
Q Consensus 132 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 211 (428)
... ....++|||+|||..+++++|+++|+.||.|.++++..++.++.++|||||+|.+.++|.+|++.|+|..+.|+
T Consensus 82 ~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 82 SSA---SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCG---GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred Ccc---cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 543 23457899999999999999999999999999999999988999999999999999999999999999999997
Q ss_pred e--EEEEEc
Q 014230 212 Q--IRCNWA 218 (428)
Q Consensus 212 ~--i~v~~~ 218 (428)
. |+|.|+
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 888775
No 14
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.98 E-value=1.3e-31 Score=233.06 Aligned_cols=171 Identities=24% Similarity=0.421 Sum_probs=145.2
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
+....++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345668999999999999999999999999999999999998999999999999999999999985 9999999999999
Q ss_pred EccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEE
Q 014230 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (428)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i 296 (428)
++........ +......++|||+|||.++|+++|+++|+.|| .|.+|.+
T Consensus 88 ~~~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i 136 (196)
T 1l3k_A 88 RAVSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEI 136 (196)
T ss_dssp ECCC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTS--CEEEEEE
T ss_pred cccCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEE
Confidence 9865432110 01122337899999999999999999999999 8999998
Q ss_pred eCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCC
Q 014230 297 QRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343 (428)
Q Consensus 297 ~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 343 (428)
.++ +|||||+|.+.++|.+|+.. ++. .++|+.|+|+|+..+..
T Consensus 137 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~---~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 137 MTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH---TVNGHNCEVRKALSKQE 185 (196)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC---EETTEECEEEECC----
T ss_pred eecCCCCCccceEEEEECCHHHHHHHHHh-CCc---EECCEEEEEEecCChhH
Confidence 865 68999999999999999987 788 89999999999886543
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=4.1e-31 Score=235.40 Aligned_cols=196 Identities=21% Similarity=0.331 Sum_probs=151.7
Q ss_pred CCCCcceeEecCCCc-ccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 137 DTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
...++++|||+|||. ++++++|+++|+.||.|.++++.+++ +|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999999764 789999999999999999999999999999999
Q ss_pred EEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEE
Q 014230 216 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 295 (428)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~ 295 (428)
.++.........................................++.++|||+|||.++++++|+++|++|| ..|.+|+
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-~~i~~v~ 183 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFK 183 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS-CCEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC-CCeeEEE
Confidence 998765332211111111100011111000111111111122345568999999999999999999999998 3688999
Q ss_pred EeC-CccEEEEEeCCHHHHHHHHHHhcCCCccccc-CeeEEEeeCCCC
Q 014230 296 VQR-DKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGSKP 341 (428)
Q Consensus 296 i~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v~~a~~~ 341 (428)
+.+ ++|+|||+|.+.++|.+|++.|||. .++ |++|+|+|++++
T Consensus 184 i~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQKDRKMALIQMGSVEEAVQALIDLHNH---DLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSSSTTCEEEEESSHHHHHHHHHHHTTC---BSSSSCBCEEEECSSC
T ss_pred EEECCCcEEEEEECCHHHHHHHHHHHCCC---ccCCCCeEEEEEecCC
Confidence 954 7999999999999999999999999 899 999999999864
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=2.6e-31 Score=226.82 Aligned_cols=161 Identities=25% Similarity=0.390 Sum_probs=142.4
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceeC---CeeEE
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAINDLTGKWLG---SRQIR 214 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~ 214 (428)
+.++|||+|||+++++++|+++|+.||.|.++++++++.++ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999998776 89999999999999999999999998775 67788
Q ss_pred EEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEE
Q 014230 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (428)
Q Consensus 215 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i 294 (428)
+.++...... ....++|||+|||.++|+++|+++|++|| .|.++
T Consensus 82 ~~~~~~~~~~----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v 125 (175)
T 3nmr_A 82 MKPADSEKNN----------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEEC 125 (175)
T ss_dssp EEECGGGCCS----------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGS--CEEEE
T ss_pred Eccccccccc----------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCC--CEEEE
Confidence 8776543221 11236899999999999999999999999 89999
Q ss_pred EEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCccccc---CeeEEEeeCC
Q 014230 295 RVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF---GKQMKCSWGS 339 (428)
Q Consensus 295 ~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~---g~~l~v~~a~ 339 (428)
++.++ +|||||+|.+.++|.+|++.|||. .+. +++|+|+|+.
T Consensus 126 ~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 126 RILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA---QTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS---CCCTTCSSCCEEEECC
T ss_pred EEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCC---cccCCCCCCeEEEecC
Confidence 99876 789999999999999999999998 555 4999999974
No 17
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=3.5e-31 Score=225.39 Aligned_cols=159 Identities=23% Similarity=0.449 Sum_probs=144.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCce
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP 123 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 123 (428)
+.++|||+|||.++|+++|+++|+.| | .|.++++.. ++|||||+|.+.++|.+|+ .+++..+.|+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 46889999999999999999999999 6 666666654 4689999999999999999 89999999999
Q ss_pred eeeecccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 014230 124 IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (428)
Q Consensus 124 l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 203 (428)
|+|.++..... ....++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|
T Consensus 80 i~v~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 80 LKIRRPHDYQP---LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp CEEECCSSCCC---CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eeecCCcccCC---CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99998765432 334689999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCceeCCeeEEEEEcc
Q 014230 204 TGKWLGSRQIRCNWAT 219 (428)
Q Consensus 204 ~~~~~~g~~i~v~~~~ 219 (428)
+|..++|+.|+|+|+.
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 9999999999999873
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.6e-30 Score=239.50 Aligned_cols=195 Identities=21% Similarity=0.310 Sum_probs=150.0
Q ss_pred CCCcceeEecCCCcccCHHHHH----HHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i 213 (428)
..++++|||+|||.++++++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999976 8999999999999884 67899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCcCCccccc-----------------chhc-----------cCCC----------------------
Q 014230 214 RCNWATKGAGNNEDKQSSDAKS-----------------VVEL-----------TNGS---------------------- 243 (428)
Q Consensus 214 ~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~-----------~~~~---------------------- 243 (428)
+|.|+................. .... ..+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 9999866442110000000000 0000 0000
Q ss_pred --C------CCC------------------cccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEe
Q 014230 244 --S------EDG------------------KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (428)
Q Consensus 244 --~------~~~------------------~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~ 297 (428)
. ... ............++.++|||+|||.++|+++|+++|++|| .|.+|++.
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~i~~v~~~ 240 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFP--GFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcC--CeEEEEEe
Confidence 0 000 0000000112344668999999999999999999999999 99999999
Q ss_pred CCc-cEEEEEeCCHHHHHHHHHHhcCCCccccc-CeeEEEeeCCC
Q 014230 298 RDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGSK 340 (428)
Q Consensus 298 ~~~-g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v~~a~~ 340 (428)
+++ |||||+|.+.++|.+|++.|||. .++ |+.|+|+|++.
T Consensus 241 ~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 241 PGRHDIAFVEFDNEVQAGAARDALQGF---KITQNNAMKISFAKK 282 (282)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHcCCc---EeCCCCEEEEEEecC
Confidence 886 99999999999999999999999 899 99999999874
No 19
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=3.2e-31 Score=226.20 Aligned_cols=162 Identities=23% Similarity=0.393 Sum_probs=143.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC------CCceEEEEEccHHHHHHHHHHhCCCccc---Cceee
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLF---GQPIK 125 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~------~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~ 125 (428)
+.++|||+|||.++|+++|+++|++||.|.+|++++++ ++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56889999999999999999999999999999999874 3579999999999999999999998775 56677
Q ss_pred eecccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 014230 126 VNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (428)
Q Consensus 126 v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 205 (428)
+.++.... ......++|||+|||.++++++|+++|+.||.|.++.+.+++ ++.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEK--NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGC--CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Eccccccc--cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 77665443 334466899999999999999999999999999999999985 689999999999999999999999999
Q ss_pred ceeC---CeeEEEEEcc
Q 014230 206 KWLG---SRQIRCNWAT 219 (428)
Q Consensus 206 ~~~~---g~~i~v~~~~ 219 (428)
..+. +++|+|.|+.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8775 4999999873
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=6.3e-31 Score=229.13 Aligned_cols=192 Identities=21% Similarity=0.327 Sum_probs=149.7
Q ss_pred cceeEecCCCc-ccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 141 HFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 141 ~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
+++|||+|||. ++++++|+++|+.||.|.++++.+++ +|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47999999999 99999999999999999999998763 7899999999999999999999999999999999987
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeC-
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR- 298 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~- 298 (428)
........................................++.++|||+|||.++++++|+++|++|| ..|.++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT-SCCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC-CCceEEEEEeC
Confidence 65432221111111111111111111111111111222345678999999999999999999999998 3688888855
Q ss_pred CccEEEEEeCCHHHHHHHHHHhcCCCccccc-CeeEEEeeCCCC
Q 014230 299 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGSKP 341 (428)
Q Consensus 299 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v~~a~~~ 341 (428)
++|+|||+|.+.++|.+|++.|||. .++ |++|+|+|++++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNH---DLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSS---CCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCC---ccCCCCeEEEEeeccc
Confidence 6899999999999999999999999 899 999999999864
No 21
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=4.6e-31 Score=229.81 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=139.8
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccC
Q 014230 55 TCRSVYVGNIH-TQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (428)
Q Consensus 55 ~~~~l~v~nLp-~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (428)
++++|||+||| ..+|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.++....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 45789999999 899999999999999999999998864 5899999999999999999999999999999999985322
Q ss_pred Ccc----------------------------------CCCCcceeEecCCCcccCHHHHHHHhccCCCc--eEEEEeecC
Q 014230 134 QRE----------------------------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSC--SDARVMWDQ 177 (428)
Q Consensus 134 ~~~----------------------------------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v--~~~~i~~~~ 177 (428)
... ...+.++|||+|||+++++++|+++|+.||.| .+++++.++
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 100 01345689999999999999999999999999 899988764
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe----eEEEEEc
Q 014230 178 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR----QIRCNWA 218 (428)
Q Consensus 178 ~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~----~i~v~~~ 218 (428)
+.++|||||+|.+.++|.+|+..|||..+.|+ ++.|+++
T Consensus 162 --~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 --SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp --SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred --CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 45679999999999999999999999999876 4666553
No 22
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.5e-31 Score=226.56 Aligned_cols=161 Identities=25% Similarity=0.405 Sum_probs=146.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
++++|||+|||.++|+++|+++|+.||.|.+|++++++ ++|||||+|.+.++|.+|+.. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 46789999999999999999999999999999998874 468999999999999999984 678999999999876
Q ss_pred ccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014230 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (428)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 210 (428)
+... ....++|||+|||.++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++ +++..++|
T Consensus 80 ~~~~---~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 80 PRDE---QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CHHH---HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred chhh---ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 5432 2234699999999999999999999999999999999998899999999999999999999998 89999999
Q ss_pred eeEEEEEccCC
Q 014230 211 RQIRCNWATKG 221 (428)
Q Consensus 211 ~~i~v~~~~~~ 221 (428)
+.|+|.|+.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999998764
No 23
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=9.2e-31 Score=228.11 Aligned_cols=165 Identities=22% Similarity=0.418 Sum_probs=146.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCce
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP 123 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 123 (428)
.+++|||+|||.++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+ .+|+..|.|+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-GGTTEEETTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCce
Confidence 45889999999999999999999999 5 55555553 45689999999999999999 89999999999
Q ss_pred eeeecccccCCc-----------------cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEE
Q 014230 124 IKVNWAYASGQR-----------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 186 (428)
Q Consensus 124 l~v~~~~~~~~~-----------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~a 186 (428)
|.|.++...... ......++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||
T Consensus 80 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a 159 (198)
T 2yh0_A 80 LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 159 (198)
T ss_dssp EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEE
T ss_pred EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEE
Confidence 999998654221 112456899999999999999999999999999999999998899999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCC
Q 014230 187 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (428)
Q Consensus 187 fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 222 (428)
||+|.+.++|.+|++.|+|..++|+.|+|.++.++.
T Consensus 160 fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 160 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999999998754
No 24
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.2e-30 Score=227.09 Aligned_cols=189 Identities=13% Similarity=0.159 Sum_probs=140.8
Q ss_pred CcceeEecCCC-cccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 140 GHFNIFVGDLS-PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 140 ~~~~l~v~~lp-~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
+.++|||+||| .++++++|+++|+.||.|.+|+++++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 89999999999999999999999854 3799999999999999999999999999999999998
Q ss_pred cCCCCCCCCc-CCccccc-chhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeE--EEE
Q 014230 219 TKGAGNNEDK-QSSDAKS-VVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI--EEV 294 (428)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i--~~i 294 (428)
.......... ....... ........................++.++|||+|||+++|+++|+++|++|| .| .++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G--~v~~~~v 155 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG--VKRPTSV 155 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT--CCCCSEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC--CcceEEE
Confidence 7543211000 0000000 0000000000000000000111234568999999999999999999999999 66 889
Q ss_pred EEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCe----eEEEeeC
Q 014230 295 RVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK----QMKCSWG 338 (428)
Q Consensus 295 ~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~----~l~v~~a 338 (428)
++.++ +|+|||+|.+.++|.+|+..|||. .|.|+ ++.|+|+
T Consensus 156 ~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~---~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSGKSERSSSGLLEWDSKSDALETLGFLNHY---QMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSCCSSSSEEEEEECSSHHHHHHHHHHHTTC---EECCSSSSSCEECEEE
T ss_pred EEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCC---CccCCCCCcceEEEec
Confidence 88876 589999999999999999999999 88886 5666654
No 25
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.7e-31 Score=226.21 Aligned_cols=159 Identities=25% Similarity=0.473 Sum_probs=142.7
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
+.++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++ ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35799999999999999999999999999999999998899999999999999999999998 4678999999998875
Q ss_pred CCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC
Q 014230 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (428)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~ 299 (428)
+... ....++|||+|||.++|+++|+++|++|| .|.++++.++
T Consensus 80 ~~~~-----------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~ 122 (167)
T 2cjk_A 80 PRDE-----------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWG--TIIDAQLMLD 122 (167)
T ss_dssp CHHH-----------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTS--CCSEEECCCS
T ss_pred chhh-----------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCc--cEEEEEEEEc
Confidence 4211 01126899999999999999999999999 8999998865
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
+|||||+|.+.++|.+|++ +++. .++|++|+|.|++++
T Consensus 123 ~~~g~~~g~afV~f~~~~~a~~A~~-~~~~---~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 123 KDTGQSRGFGFVTYDSADAVDRVCQ-NKFI---DFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSSTTSEEEEEEESSHHHHHHHHH-CSEE---CSSSSCEEEEECCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHh-CCCE---EeCCeEEEEeecCCC
Confidence 5899999999999999998 8998 899999999998764
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=4.3e-30 Score=228.75 Aligned_cols=164 Identities=20% Similarity=0.334 Sum_probs=146.0
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 52 DPSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
...++++|||+|||. ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345678999999999 99999999999999999999999887 6899999999999999999999999999999999986
Q ss_pred ccCCc--------------------------------cCCCCcceeEecCCCcccCHHHHHHHhccCC-CceEEEEeecC
Q 014230 131 ASGQR--------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQ 177 (428)
Q Consensus 131 ~~~~~--------------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~i~~~~ 177 (428)
..... ....+.++|||+|||.++++++|+++|+.|| .|.+++++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 54110 0013468899999999999999999999999 9999998642
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEEccCC
Q 014230 178 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKG 221 (428)
Q Consensus 178 ~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~ 221 (428)
.+|||||+|.+.++|.+|++.|+|..+. |+.|+|.|+++.
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 4789999999999999999999999999 999999998763
No 27
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.2e-30 Score=227.33 Aligned_cols=176 Identities=14% Similarity=0.250 Sum_probs=141.8
Q ss_pred cceeEecCCCcccCHHHHHHHhccCC-----------CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYP-----------SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g-----------~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
.++|||+|||.++++++|+++|+.|| .|.++.+ ++++|||||+|.+.++|.+|+ .|++..+.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 57999999999999999999999995 3444433 467899999999999999999 79999999
Q ss_pred CeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCe
Q 014230 210 SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 289 (428)
Q Consensus 210 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~ 289 (428)
|+.|+|.++.............. ...............++|||+|||.++++++|+++|++||
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-- 139 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPS---------------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG-- 139 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSS---------------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS--
T ss_pred CceEEEeCCCCCCCCCCCcCCCc---------------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--
Confidence 99999998876533221110000 0000011112234558999999999999999999999999
Q ss_pred eEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCCCC
Q 014230 290 VIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343 (428)
Q Consensus 290 ~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 343 (428)
.|.++++.++ +|||||+|.+.++|.+|++.|||. .++|+.|+|.|++++..
T Consensus 140 ~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 140 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM---QLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC---EETTEECEEEESCCCCC
T ss_pred CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEEECCCCCC
Confidence 8999999876 789999999999999999999999 99999999999987543
No 28
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1e-30 Score=223.18 Aligned_cols=165 Identities=22% Similarity=0.362 Sum_probs=141.7
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+.++|||+|||.++++++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|++ +++..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3456789999999999999999999999998877 344555778999999999999999999995 99999999999999
Q ss_pred EccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEE-
Q 014230 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR- 295 (428)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~- 295 (428)
++...... .....++|||+|||.++|+++|+++|++|| .|..+.
T Consensus 87 ~~~~~~~~---------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g--~v~~~~~ 131 (175)
T 1fje_B 87 KPKGRDSK---------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDAL--EIRLVSQ 131 (175)
T ss_dssp CCCCSSCS---------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCS--EEEEECS
T ss_pred cCCCcccc---------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcC--eEEEecC
Confidence 98764321 112347899999999999999999999999 777761
Q ss_pred EeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 296 VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 296 i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
..+++|||||+|.+.++|.+|++.|||. .++|+.|+|+|++++
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGA---EIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEE---EETTEEEEEEECSSC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEecCCC
Confidence 1123899999999999999999999999 999999999999764
No 29
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.5e-30 Score=220.76 Aligned_cols=163 Identities=16% Similarity=0.326 Sum_probs=142.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEE---eecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL---IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
.+.+.++|||+|||.++|+++|+++|+.||.+..+.+ ...+++|||||+|.+.++|.+|+ .+++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 4567789999999999999999999999987665222 22346799999999999999999 5999999999999999
Q ss_pred ccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014230 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (428)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 208 (428)
+...... .....++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..+
T Consensus 88 ~~~~~~~-~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 88 PKGRDSK-KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp CCCSSCS-TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred CCCcccc-ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 8765433 34456899999999999999999999999988765 36789999999999999999999999999999
Q ss_pred CCeeEEEEEccCC
Q 014230 209 GSRQIRCNWATKG 221 (428)
Q Consensus 209 ~g~~i~v~~~~~~ 221 (428)
+|+.|+|.|+.++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9999999998764
No 30
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.2e-29 Score=233.87 Aligned_cols=168 Identities=24% Similarity=0.373 Sum_probs=156.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
..++|||+|||.++|+++|+++|+.||.|.+++++.++. +|||||+|.+.++|.+|+..+++..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 346899999999999999999999999999999988753 5899999999999999999999999999999999998
Q ss_pred ccCCccCCCCcceeEecCCCccc-CHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 131 ASGQREDTSGHFNIFVGDLSPEV-TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~-~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
...........++|||+|||.++ ++++|+++|+.||.|.++.+..+. +|+++|+|||+|.+.++|.+|+..|+|..++
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 88777777788999999999995 999999999999999999999885 7899999999999999999999999999999
Q ss_pred CeeEEEEEccCCCC
Q 014230 210 SRQIRCNWATKGAG 223 (428)
Q Consensus 210 g~~i~v~~~~~~~~ 223 (428)
|+.|+|.|+.++..
T Consensus 253 g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 253 GSHLRVSFCAPGPP 266 (284)
T ss_dssp TEECEEEECCSSSC
T ss_pred CeEEEEEEecCCCc
Confidence 99999999977543
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.6e-29 Score=232.65 Aligned_cols=162 Identities=19% Similarity=0.402 Sum_probs=144.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCceeEEEeec-CCCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~i~~~~~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
..++++|||+|||.++|+++|+ ++|+.||.|.+|++.++ +.+|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4567899999999999999976 89999999999998864 356999999999999999999999999999999999
Q ss_pred cccccCCc------------------------------------------------------------------------
Q 014230 128 WAYASGQR------------------------------------------------------------------------ 135 (428)
Q Consensus 128 ~~~~~~~~------------------------------------------------------------------------ 135 (428)
|+......
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 98654320
Q ss_pred ------------------------------------cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCC
Q 014230 136 ------------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT 179 (428)
Q Consensus 136 ------------------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~ 179 (428)
....+.++|||+|||.++++++|+++|+.||.|.++++..++
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-- 243 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-- 243 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--
Confidence 112345789999999999999999999999999999998553
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEEcc
Q 014230 180 GRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWAT 219 (428)
Q Consensus 180 ~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 219 (428)
+|||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 589999999999999999999999999 9999999985
No 32
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=8.4e-30 Score=221.99 Aligned_cols=160 Identities=20% Similarity=0.347 Sum_probs=143.5
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCC
Q 014230 56 CRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (428)
Q Consensus 56 ~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (428)
+++|||+|||. ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++.....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 47899999999 99999999999999999999999886 68999999999999999999999999999999998865421
Q ss_pred c--------------------------------cCCCCcceeEecCCCcccCHHHHHHHhccCC-CceEEEEeecCCCCC
Q 014230 135 R--------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGR 181 (428)
Q Consensus 135 ~--------------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~ 181 (428)
. ....+.++|||+|||..+++++|+++|+.|| .|.+++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----- 156 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----- 156 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----
Confidence 0 0113478899999999999999999999999 9999998753
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEEccCC
Q 014230 182 SRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKG 221 (428)
Q Consensus 182 ~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~ 221 (428)
.+|+|||+|.+.++|.+|+..|+|..++ |+.|+|.|+++.
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999998753
No 33
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3.2e-29 Score=227.62 Aligned_cols=158 Identities=27% Similarity=0.407 Sum_probs=144.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
.....++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+..+++..+.|+.|.|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD--RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 4556788999999999999999999999999999999654 58999999999999999999999999999999999864
Q ss_pred cCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CceeC-
Q 014230 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT-GKWLG- 209 (428)
Q Consensus 132 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-~~~~~- 209 (428)
..+|||+|||..+++++|+++|+.||.|.++.++.| .+++++|||||+|.+.++|.+|+..|+ +..+.
T Consensus 96 ---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 96 ---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp ---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred ---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 358999999999999999999999999999999999 689999999999999999999999994 55554
Q ss_pred --CeeEEEEEccCC
Q 014230 210 --SRQIRCNWATKG 221 (428)
Q Consensus 210 --g~~i~v~~~~~~ 221 (428)
+++|.|.++...
T Consensus 166 ~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 166 TTPRPVIVEPMEQF 179 (261)
T ss_dssp SSCCBCEEEECCCE
T ss_pred CCCceEEEeecccc
Confidence 999999998764
No 34
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.1e-29 Score=214.31 Aligned_cols=153 Identities=17% Similarity=0.330 Sum_probs=135.2
Q ss_pred CcceeEecCCCcccCHHHHHHHhccC----C-------CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVY----P-------SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 208 (428)
+.++|||+|||.++++++|+++|+.| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35799999999999999999999999 5 55555553 56899999999999999999 7999999
Q ss_pred CCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCC
Q 014230 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288 (428)
Q Consensus 209 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~ 288 (428)
.|+.|+|.++...... ...++|||+|||.++|+++|+++|++||
T Consensus 76 ~g~~i~v~~~~~~~~~-----------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G- 119 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL-----------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFG- 119 (172)
T ss_dssp TTEECEEECCSSCCCC-----------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTS-
T ss_pred cCceeeecCCcccCCC-----------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcC-
Confidence 9999999986543211 1136899999999999999999999999
Q ss_pred eeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 289 GVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 289 ~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
.|.++.+.++ +|+|||+|.+.++|.+|++.|||. .++|++|+|+|+.
T Consensus 120 -~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~As 172 (172)
T 2g4b_A 120 -PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM---QLGDKKLLVQRAS 172 (172)
T ss_dssp -CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC---EETTEECEEEECC
T ss_pred -CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC---EECCeEEEEEeCC
Confidence 8999999876 689999999999999999999999 9999999999973
No 35
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.3e-29 Score=232.82 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=146.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC-CceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
..++|||+|||.++++++|+++|+.|| .|.+|++..++ .+|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 568899999999999999999999999 99999998865 57999999999999999999999999999999999987
Q ss_pred ccCCcc----CCCCcceeEecCCCcc-cCHHHHHHHhccCCCceEEEEeecCC-CCCcccEEEEEeCCHHHHHHHHHHhC
Q 014230 131 ASGQRE----DTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQK-TGRSRGFGFVSFRNQQDAQSAINDLT 204 (428)
Q Consensus 131 ~~~~~~----~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~ 204 (428)
+..... .....++|||+|||.+ +++++|+++|+.||.|.++++..+.. ++.++|||||+|.+.++|.+|+ .||
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 655432 3356689999999999 99999999999999999999998865 5899999999999999999999 999
Q ss_pred CceeCCeeEEEEEccCC
Q 014230 205 GKWLGSRQIRCNWATKG 221 (428)
Q Consensus 205 ~~~~~g~~i~v~~~~~~ 221 (428)
|..++|+.|+|.|+.++
T Consensus 275 g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 275 RSLLGNREISVSLADKK 291 (292)
T ss_dssp TEEETTEEEEEEECCCC
T ss_pred CCEECCcEEEEEEecCC
Confidence 99999999999999865
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=4.3e-28 Score=220.16 Aligned_cols=153 Identities=28% Similarity=0.454 Sum_probs=137.5
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
....++|||+|||.++|+++|+++|+.||.|.++.+. +++|||||+|.+.++|.+|+..+++..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 4566899999999999999999999999999999986 3479999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEe
Q 014230 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (428)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~ 297 (428)
+.+. ++|||+|||.++|+++|+++|+.|| .|.+|.+.
T Consensus 93 a~~~-----------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~i~ 129 (261)
T 3sde_A 93 ATHG-----------------------------------------AALTVKNLSPVVSNELLEQAFSQFG--PVEKAVVV 129 (261)
T ss_dssp CCCS-----------------------------------------SEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEE
T ss_pred cccC-----------------------------------------CcccccCCCCCCCHHHHHHHHHhcC--CeEEEEee
Confidence 7531 5799999999999999999999999 89999988
Q ss_pred CC-----ccEEEEEeCCHHHHHHHHHHhcCCCccccc---CeeEEEeeCCCC
Q 014230 298 RD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF---GKQMKCSWGSKP 341 (428)
Q Consensus 298 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~---g~~l~v~~a~~~ 341 (428)
.+ +|||||+|.+.++|.+|+..||+.. .+. +++|.|.++...
T Consensus 130 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~--~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 130 VDDRGRATGKGFVEFAAKPPARKALERCGDGA--FLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EETTSCEEEEEEEEESSHHHHHHHHHHHHHSC--EESSSSCCBCEEEECCCE
T ss_pred eCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe--EEecCCCceEEEeecccc
Confidence 66 7999999999999999999995431 333 999999998754
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=3.5e-22 Score=166.98 Aligned_cols=138 Identities=23% Similarity=0.297 Sum_probs=111.1
Q ss_pred EEEeecC--CCceEEEEEccHHHHHHHHHHhCCCcccCceeeee-------cccc---cCCccCCCCcceeEecCCCccc
Q 014230 86 CKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN-------WAYA---SGQREDTSGHFNIFVGDLSPEV 153 (428)
Q Consensus 86 i~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~-------~~~~---~~~~~~~~~~~~l~v~~lp~~~ 153 (428)
+++..++ .+|||||+|.+.++|++|+..+++....+..+.+. .... ..........++|||+|||+++
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 4555544 46999999999999999998877543322222221 1111 1122233456899999999999
Q ss_pred CHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCC
Q 014230 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (428)
Q Consensus 154 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 223 (428)
++++|+++|+.||.|.++++.+|+.+++++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++..+..
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999988999999999999999999999999999999999999999987543
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=2.7e-21 Score=161.58 Aligned_cols=146 Identities=20% Similarity=0.268 Sum_probs=106.3
Q ss_pred EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcc
Q 014230 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKE 249 (428)
Q Consensus 170 ~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (428)
.+++.++.. +++||+||+|.+.++|++|++.+++....+..+.+........... .
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~ 57 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE----------------------G 57 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC----------------------C
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc----------------------c
Confidence 456666643 7999999999999999999988775432222222211100000000 0
Q ss_pred cCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 250 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 250 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
.............++|||+|||+++|+++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.|||.
T Consensus 58 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 58 SHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp CCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 00001111223457999999999999999999999999 9999999875 689999999999999999999999
Q ss_pred CcccccCeeEEEeeCCCCCCC
Q 014230 324 QSSYLFGKQMKCSWGSKPTPP 344 (428)
Q Consensus 324 ~~~~~~g~~l~v~~a~~~~~~ 344 (428)
.++|++|+|.|++.+.+.
T Consensus 136 ---~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 136 ---VLDGRELRVQMARYGRPP 153 (158)
T ss_dssp ---ESSSSEEEEEEECCSSCC
T ss_pred ---EECCeEEEEEECCCCCCC
Confidence 899999999999875443
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=8.3e-22 Score=163.03 Aligned_cols=138 Identities=21% Similarity=0.271 Sum_probs=112.6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCC
Q 014230 179 TGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPE 257 (428)
Q Consensus 179 ~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (428)
..+.+|+++|+|.+.++|++|++.+ ++..++| .+++.++........... .........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~ 68 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH-------------------HHHHHMHRD 68 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS-------------------SCCCCSCSS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc-------------------ccccccccc
Confidence 4478999999999999999999999 9999999 999987654221100000 000011122
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
.....++|||+|||+++|+++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|+..|||. .++|++|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYG--PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR---TLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHS--CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSS---CSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhC--CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEE
Confidence 334458999999999999999999999999 9999999998 999999999999999999999999 8999999999
Q ss_pred eCCCC
Q 014230 337 WGSKP 341 (428)
Q Consensus 337 ~a~~~ 341 (428)
|++.+
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98865
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.1e-21 Score=154.34 Aligned_cols=109 Identities=26% Similarity=0.501 Sum_probs=74.9
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
..+|||+|||+++++++|+++|+.||.|.+++|++|+ +.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999885 45899999999999999999999999999999999999876
Q ss_pred CCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHH
Q 014230 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 278 (428)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 278 (428)
+........ ......++|||+|||+++|++-
T Consensus 83 ~~~~~~~~~---------------------------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELG---------------------------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-------------------------------------------------------
T ss_pred ccccccccc---------------------------cccCCCCceEeCCCCCCccccc
Confidence 543211110 0112235799999999999863
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=4.4e-21 Score=158.67 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=110.3
Q ss_pred CCceEEEEEccHHHHHHHHHHh-CCCcccCceeeeeccccc-------------CCccCCCCcceeEecCCCcccCHHHH
Q 014230 93 KSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWAYAS-------------GQREDTSGHFNIFVGDLSPEVTDATL 158 (428)
Q Consensus 93 ~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~~~~-------------~~~~~~~~~~~l~v~~lp~~~~~~~l 158 (428)
-.|+++|+|.+.++|++|++.+ |+..+.| .+.+.++... .........++|||+|||+++++++|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 3689999999999999999999 9999999 9999987653 11233456789999999999999999
Q ss_pred HHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 159 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 159 ~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
+++|+.||.|.++++.++ ++|||||+|.+.++|.+|+..|++..+.|+.|+|+|+.++
T Consensus 91 ~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999865 6899999999999999999999999999999999998765
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=3.5e-21 Score=151.42 Aligned_cols=103 Identities=23% Similarity=0.470 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC--CceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~--~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
...+|||+|||.++|+++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|++.|++..|.|+.|+|.++..+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 346799999999999999999999999999999998864 589999999999999999999999999999999998765
Q ss_pred CCccC-----CCCcceeEecCCCcccCHHH
Q 014230 133 GQRED-----TSGHFNIFVGDLSPEVTDAT 157 (428)
Q Consensus 133 ~~~~~-----~~~~~~l~v~~lp~~~~~~~ 157 (428)
..+.. .....+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 44322 23346799999999998863
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=140.46 Aligned_cols=80 Identities=33% Similarity=0.517 Sum_probs=77.2
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
.++|||+|||.++|+++|+++|+.||.|.++++.+|+.+++++|||||+|.+.++|.+|++.|||..+.|+.|+|+|+++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999865
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=136.39 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=73.6
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcC--CCcccccCeeEEEee
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT--TQSSYLFGKQMKCSW 337 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~~g~~l~v~~ 337 (428)
++.++|||+|||+++|+++|+++|++|| .|.+|++.++||||||+|++.++|.+|++.|++ . .+.|++|+|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG--~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~---~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP---VLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHC--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCC---EETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCc---eECCEEEEEEE
Confidence 3458999999999999999999999999 999999999999999999999999999998864 5 79999999999
Q ss_pred CCCCCCCC
Q 014230 338 GSKPTPPG 345 (428)
Q Consensus 338 a~~~~~~~ 345 (428)
++.+....
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98764443
No 45
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=133.29 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=73.5
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
..++.++|||+|||+++|+++|+++|++|| .|.++++.++||+|||+|.+.++|.+|++.|++.+. .+.|++|+|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG--~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~-~i~Gr~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFG--PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQI-YIAGHPAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCE-EETTEEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCc-eeCCcEEEEEe
Confidence 345568999999999999999999999999 999999999999999999999999999999998721 37899999999
Q ss_pred CCCC
Q 014230 338 GSKP 341 (428)
Q Consensus 338 a~~~ 341 (428)
++.+
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9864
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=6e-19 Score=136.93 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=79.1
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
.+.++|||+|||+++++++|+++|++||.|.+++|++|+.+++++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 014230 219 TKG 221 (428)
Q Consensus 219 ~~~ 221 (428)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=135.57 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=76.7
Q ss_pred ceeEecCCCcccCHHHHHHHhccCC-CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CceeCCeeEEEEEcc
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT-GKWLGSRQIRCNWAT 219 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~~~ 219 (428)
++|||+|||.++|+++|+++|+.|| .|.+|++++|+.+++++|||||+|.+.++|.+|++.++ +..++|+.|+|+|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 89999999999999999999999999999999998774 567999999999998
Q ss_pred CCCCC
Q 014230 220 KGAGN 224 (428)
Q Consensus 220 ~~~~~ 224 (428)
++...
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 48
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=1.8e-19 Score=145.55 Aligned_cols=124 Identities=25% Similarity=0.385 Sum_probs=83.1
Q ss_pred eEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEee
Q 014230 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW 175 (428)
Q Consensus 96 ~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~ 175 (428)
++|.+|.+...+..|+..+++....|+. ...+..+ ..+..+.++|||+|||.++++++|+++|+.||.|.++.+..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~---~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP---PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ------------------------------CCSCCS---CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC---CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 6788889999999999998887766543 2233322 22334567999999999999999999999999999999999
Q ss_pred cCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCC
Q 014230 176 DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (428)
Q Consensus 176 ~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 223 (428)
++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+|+.....
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 988999999999999999999999999999999999999999987544
No 49
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-18 Score=131.67 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=74.0
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
..++.++|||+|||+++++++|+++|++|| .|.+|.+.++||||||+|.+.++|.+|++.|++.. ..+.|++|+|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~-~~i~Gr~l~V~~ 87 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFG--TICYVMMMPFKRQALVEFENIDSAKECVTFAADVP-VYIAGQQAFFNY 87 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSC-CBSSSSBCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCC-ceECCEEEEEEE
Confidence 345568999999999999999999999999 99999999999999999999999999999997651 159999999999
Q ss_pred CCCCCC
Q 014230 338 GSKPTP 343 (428)
Q Consensus 338 a~~~~~ 343 (428)
++.+..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 986543
No 50
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=7e-19 Score=133.93 Aligned_cols=75 Identities=36% Similarity=0.490 Sum_probs=70.1
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
.+++|||+|||+++|+++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~---~~~gr~l~ 92 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIG--EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL---RLQSKTIK 92 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC---EECCEEEE
Confidence 347899999999999999999999999 9999999865 689999999999999999999999 99999999
Q ss_pred EeeCCC
Q 014230 335 CSWGSK 340 (428)
Q Consensus 335 v~~a~~ 340 (428)
|+|+++
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999974
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=7.4e-19 Score=132.20 Aligned_cols=82 Identities=22% Similarity=0.416 Sum_probs=75.8
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCC--ceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCee
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPS--CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK----WLGSRQ 212 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~~ 212 (428)
..-.+|||+|||+++|+++|+++|++||. +.+|++++|+.++++||||||+|.+.++|.+|++.|++. .++||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34569999999999999999999999995 679999999999999999999999999999999999986 589999
Q ss_pred EEEEEccC
Q 014230 213 IRCNWATK 220 (428)
Q Consensus 213 i~v~~~~~ 220 (428)
|.|+|++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 52
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=131.98 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=72.1
Q ss_pred CceeEEEcCCCc-ccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 261 QYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 261 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
+.++|||+|||+ ++|+++|+++|++|| .|.+|.+.+++|||||+|.+.++|..|++.||+.. ..|.|++|+|.|++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~-~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFG--VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTP-ALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGS--CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSC-CEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCC-ceECCcEEEEEECC
Confidence 458999999999 999999999999999 99999999999999999999999999999998751 04999999999998
Q ss_pred CCC
Q 014230 340 KPT 342 (428)
Q Consensus 340 ~~~ 342 (428)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 543
No 53
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.7e-18 Score=124.95 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=70.4
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
...|+|+||++.+|+++|+++|.+|| .|.++++..+||||||+|.+.++|.+|++.||+. .++|++|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G--~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~---~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHG--PLVSFHPYLNQGIALCKYTTREEANKAQMALNNC---VLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTE---EETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhC--CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCC---EECCcEEEEEECC
Confidence 36899999999999999999999999 9999999999999999999999999999999999 9999999999984
No 54
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-18 Score=129.20 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=73.7
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhc--CCCcccccCeeEEE
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFGKQMKC 335 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~~~g~~l~v 335 (428)
..++.++|||+|||+++++++|+++|++|| .|.+|.+.++||||||+|.+.++|.+|++.|+ +. .+.|++|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG--~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~---~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFG--KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTP---HLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCC---EETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCc---eECCcEEEE
Confidence 334568999999999999999999999999 99999999999999999999999999999875 55 799999999
Q ss_pred eeCCCCCCC
Q 014230 336 SWGSKPTPP 344 (428)
Q Consensus 336 ~~a~~~~~~ 344 (428)
.|++.....
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999865443
No 55
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.1e-18 Score=137.42 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=93.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC-CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
+.++++|||+|||.++|+++|+++|+.||.|.+|.+..+. ++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4466899999999999999999999999999999998765 468999999999999999999999999999999999976
Q ss_pred cCCccCCCCcceeEecCCCcccCHHHHHHHhccCCC
Q 014230 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS 167 (428)
Q Consensus 132 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~ 167 (428)
.... .+++...++++|.++|+.||.
T Consensus 85 ~~~~-----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF-----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT-----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh-----------hhhhHhHhHHHHHHHHHHhCC
Confidence 5432 578888999999999999975
No 56
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=133.86 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcC--CCcccccCeeEEE
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT--TQSSYLFGKQMKC 335 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~~g~~l~v 335 (428)
..++.++|||+|||+++|+++|+++|++|| .|.+|++.++||||||+|++.++|.+|++.|++ . .+.|++|+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG--~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~---~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP---VLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTS--CCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCC---CBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCc---eECCeEEEE
Confidence 344568999999999999999999999999 999999999999999999999999999999874 5 799999999
Q ss_pred eeCCCCCCC
Q 014230 336 SWGSKPTPP 344 (428)
Q Consensus 336 ~~a~~~~~~ 344 (428)
.|++.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999875544
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=4.5e-18 Score=125.46 Aligned_cols=80 Identities=51% Similarity=0.890 Sum_probs=77.4
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..++|+.|+|+++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999865
No 58
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=8.8e-18 Score=132.11 Aligned_cols=90 Identities=53% Similarity=0.928 Sum_probs=83.4
Q ss_pred ccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 135 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
..+..+.++|||+|||..+++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456778999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCCC
Q 014230 215 CNWATKGAGN 224 (428)
Q Consensus 215 v~~~~~~~~~ 224 (428)
|.|+..+...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876544
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=127.48 Aligned_cols=83 Identities=55% Similarity=0.976 Sum_probs=76.9
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
.+.++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|++..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCC
Q 014230 219 TKG 221 (428)
Q Consensus 219 ~~~ 221 (428)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 60
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.8e-18 Score=129.96 Aligned_cols=88 Identities=27% Similarity=0.440 Sum_probs=82.3
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
.+..+.++|||+|||.++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014230 216 NWATKGAG 223 (428)
Q Consensus 216 ~~~~~~~~ 223 (428)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 61
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=132.49 Aligned_cols=93 Identities=27% Similarity=0.436 Sum_probs=82.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCCcc
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (428)
++|||+|||.++|+++|+++|++||.|.+|++..+ .+|||||+|.+.++|.+|++.|++..+.|+.|+|.++.+.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 47999999999999999999999999999999988 67899999999999999999999999999999999997765332
Q ss_pred C-------CCCcceeEecCCC
Q 014230 137 D-------TSGHFNIFVGDLS 150 (428)
Q Consensus 137 ~-------~~~~~~l~v~~lp 150 (428)
. .....+|||+||+
T Consensus 80 ~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 80 RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCCccccCCCceecCCCC
Confidence 1 1235789999996
No 62
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=8.6e-18 Score=132.16 Aligned_cols=88 Identities=27% Similarity=0.465 Sum_probs=82.0
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
....+.++|||+|||.++++++|+++|+.||.|.+++|.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456689999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014230 216 NWATKGAG 223 (428)
Q Consensus 216 ~~~~~~~~ 223 (428)
+|+.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99987654
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=127.92 Aligned_cols=86 Identities=34% Similarity=0.454 Sum_probs=80.6
Q ss_pred ccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 135 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
..+..+.++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEccC
Q 014230 215 CNWATK 220 (428)
Q Consensus 215 v~~~~~ 220 (428)
|++++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 64
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=130.57 Aligned_cols=80 Identities=19% Similarity=0.373 Sum_probs=70.4
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCc-ccccCeeE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQS-SYLFGKQM 333 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~-~~~~g~~l 333 (428)
.-+||||+|||+++|+++|+++|++||.+.+.+|++.++ ||||||+|.+.++|.+|++.||+... ..++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 347999999999999999999999999656778998765 78999999999999999999999621 13899999
Q ss_pred EEeeCCC
Q 014230 334 KCSWGSK 340 (428)
Q Consensus 334 ~v~~a~~ 340 (428)
+|+|+++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999985
No 65
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.2e-18 Score=128.50 Aligned_cols=87 Identities=26% Similarity=0.343 Sum_probs=81.3
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014230 218 ATKGAGN 224 (428)
Q Consensus 218 ~~~~~~~ 224 (428)
+..+...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876543
No 66
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=5.2e-18 Score=128.76 Aligned_cols=83 Identities=27% Similarity=0.590 Sum_probs=79.0
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
++++|||+|||.++++++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|++.|+|..++|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 014230 220 KGA 222 (428)
Q Consensus 220 ~~~ 222 (428)
.+.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 67
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=128.56 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCC--CcccCceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~ 130 (428)
+.+.++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.+++ ..|.|++|+|.|+.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 456788999999999999999999999999999999887 58999999999999999998864 68999999999997
Q ss_pred ccCCc
Q 014230 131 ASGQR 135 (428)
Q Consensus 131 ~~~~~ 135 (428)
.+...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 66543
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=4.9e-18 Score=125.84 Aligned_cols=82 Identities=34% Similarity=0.526 Sum_probs=77.8
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 014230 218 AT 219 (428)
Q Consensus 218 ~~ 219 (428)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 69
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.7e-18 Score=130.85 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=73.3
Q ss_pred CCCceeEEEcCCCcc-cCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 259 NPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
..+.++|||+|||++ +|+++|+++|++|| .|.+|.+.++||||||+|.+.++|.+|++.|++.. ..|.|++|+|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~-~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG--KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKA-LWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTS--CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSC-CCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcC--CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCC-ceECCEEEEEEE
Confidence 345689999999998 99999999999999 99999999999999999999999999999987531 059999999999
Q ss_pred CCCCCCC
Q 014230 338 GSKPTPP 344 (428)
Q Consensus 338 a~~~~~~ 344 (428)
++.....
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9865443
No 70
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.8e-18 Score=128.84 Aligned_cols=87 Identities=32% Similarity=0.463 Sum_probs=81.5
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45668999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014230 218 ATKGAGN 224 (428)
Q Consensus 218 ~~~~~~~ 224 (428)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 71
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=127.59 Aligned_cols=86 Identities=22% Similarity=0.446 Sum_probs=80.3
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++ +++..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4556899999999999999999999999999999999998899999999999999999999998 999999999999999
Q ss_pred ccCCCCC
Q 014230 218 ATKGAGN 224 (428)
Q Consensus 218 ~~~~~~~ 224 (428)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9876543
No 72
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=126.76 Aligned_cols=85 Identities=31% Similarity=0.539 Sum_probs=80.2
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
.+.++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014230 219 TKGAG 223 (428)
Q Consensus 219 ~~~~~ 223 (428)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=127.37 Aligned_cols=85 Identities=18% Similarity=0.364 Sum_probs=79.7
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+.++|||+|||.++++++|+++|+.||.|.++.+..++ +++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EccCCC
Q 014230 217 WATKGA 222 (428)
Q Consensus 217 ~~~~~~ 222 (428)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998754
No 74
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=126.27 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=78.4
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+.++|||+|||.++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Ecc
Q 014230 217 WAT 219 (428)
Q Consensus 217 ~~~ 219 (428)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=5.7e-18 Score=142.08 Aligned_cols=125 Identities=16% Similarity=0.286 Sum_probs=80.2
Q ss_pred EEEccHHHHHHHHHHhCCCccc--Cceeeeeccccc-----------------CCccCCCCcceeEecCCCcccCHHHHH
Q 014230 99 IHYFDRRSAAMAILSLNGRHLF--GQPIKVNWAYAS-----------------GQREDTSGHFNIFVGDLSPEVTDATLF 159 (428)
Q Consensus 99 V~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~~~-----------------~~~~~~~~~~~l~v~~lp~~~~~~~l~ 159 (428)
.+|.+.++|..++..+++.... |+.....+.... .......+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999988887665 555555442110 011223456789999999999999999
Q ss_pred HHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCC
Q 014230 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (428)
Q Consensus 160 ~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 223 (428)
++|+.||.|..|.|..++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999877544
No 76
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=1.3e-18 Score=130.34 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=72.7
Q ss_pred ceeEecCCCcccCHHHHHHHhccCC--CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
.+|||+|||.++++++|+++|+.|| .|.+++++.|+.+++++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 014230 220 KGA 222 (428)
Q Consensus 220 ~~~ 222 (428)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 77
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.4e-18 Score=127.69 Aligned_cols=86 Identities=31% Similarity=0.654 Sum_probs=80.5
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~-~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
.+.++|||+|||.++++++|+++|+.||.|.++ ++.+++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014230 218 ATKGAGN 224 (428)
Q Consensus 218 ~~~~~~~ 224 (428)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 78
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=126.13 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=74.3
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCccccc--CeeEEEe
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF--GKQMKCS 336 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~--g~~l~v~ 336 (428)
.++.++|||+|||.++|+++|+++|++|| .|.+|.+.+++|||||+|.+.++|.+|++.||+. .+. |++|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFG--SIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGF---PLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTS--CEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTC---BCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCC---EeCCCCcEEEEE
Confidence 34458999999999999999999999999 9999999999999999999999999999999999 899 9999999
Q ss_pred eCCCCCC
Q 014230 337 WGSKPTP 343 (428)
Q Consensus 337 ~a~~~~~ 343 (428)
|++.+..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987543
No 79
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=127.81 Aligned_cols=81 Identities=31% Similarity=0.538 Sum_probs=75.1
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeC
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (428)
..+.++|||+|||.++|+++|+++|++|| .|.+|++.+++|||||+|.+.++|.+|++.||+. .++|++|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM---PLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTC--CCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTC---CBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcC--CeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC---EeCCceEEEEEc
Confidence 34558999999999999999999999999 8999999999999999999999999999999999 899999999999
Q ss_pred CCCCCC
Q 014230 339 SKPTPP 344 (428)
Q Consensus 339 ~~~~~~ 344 (428)
+.+...
T Consensus 87 ~~~~~~ 92 (99)
T 2cpj_A 87 CHSASL 92 (99)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 875443
No 80
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=129.09 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=82.1
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
......++|||+|||.++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014230 216 NWATKGAG 223 (428)
Q Consensus 216 ~~~~~~~~ 223 (428)
.++..+..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987654
No 81
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.3e-17 Score=128.64 Aligned_cols=83 Identities=30% Similarity=0.432 Sum_probs=74.7
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
..+.++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .|+|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 86 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAG--VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ---LLFDRPM 86 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC---EeCCCEE
Confidence 34458999999999999999999999999 8999999876 789999999999999999999999 9999999
Q ss_pred EEeeCCCCCCCCC
Q 014230 334 KCSWGSKPTPPGT 346 (428)
Q Consensus 334 ~v~~a~~~~~~~~ 346 (428)
+|.|++...+...
T Consensus 87 ~v~~a~~~~~~~~ 99 (114)
T 2do0_A 87 HVKMDERALPKGD 99 (114)
T ss_dssp EEEECSCCCCCSC
T ss_pred EEEEcccCCCCCC
Confidence 9999986555443
No 82
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=7.7e-18 Score=133.12 Aligned_cols=85 Identities=31% Similarity=0.498 Sum_probs=79.2
Q ss_pred ccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 135 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
..+..+.++|||+|||.++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|++.||+..++|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEcc
Q 014230 215 CNWAT 219 (428)
Q Consensus 215 v~~~~ 219 (428)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99874
No 83
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=4.5e-17 Score=128.03 Aligned_cols=82 Identities=34% Similarity=0.652 Sum_probs=74.6
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
....++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .|+|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~ 86 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ---WLGGRQ 86 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC---EETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCEE
Confidence 34558999999999999999999999999 8999999876 689999999999999999999999 999999
Q ss_pred EEEeeCCCCCCCC
Q 014230 333 MKCSWGSKPTPPG 345 (428)
Q Consensus 333 l~v~~a~~~~~~~ 345 (428)
|+|.|++.+....
T Consensus 87 l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 87 IRTNWATRKPPAP 99 (115)
T ss_dssp CEEEESSCCCCCS
T ss_pred EEEEEccCCCCCC
Confidence 9999998765543
No 84
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=129.41 Aligned_cols=87 Identities=29% Similarity=0.453 Sum_probs=81.3
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
+..+.++|||+|||.++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 014230 217 WATKGAG 223 (428)
Q Consensus 217 ~~~~~~~ 223 (428)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9987543
No 85
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=126.57 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCc--ccCceeeeecc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRH--LFGQPIKVNWA 129 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~l~v~~~ 129 (428)
...++++|||+|||.++|+++|+++|++||.|.+|+++++ +|+|||+|.+.++|..|++.+++.. +.|++|+|+|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 4557789999999999999999999999999999999864 4799999999999999999999876 78999999998
Q ss_pred ccc
Q 014230 130 YAS 132 (428)
Q Consensus 130 ~~~ 132 (428)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 764
No 86
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=3.6e-18 Score=134.37 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=92.6
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||..+++++|+++|+.||.|.++.+..+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999865 46699999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeEEEcCCCcccCHHHHHHHHhccC
Q 014230 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287 (428)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 287 (428)
+.+.... .+++...++++|.++|++||
T Consensus 82 a~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 82 YNANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp CCHHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHC
T ss_pred ecCChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhC
Confidence 8653211 46788899999999999998
No 87
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=124.32 Aligned_cols=76 Identities=29% Similarity=0.598 Sum_probs=71.7
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHh-cCCCcccccCeeEEEee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG-NTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~~~~g~~l~v~~ 337 (428)
....++|||+|||.++++++|+++|++|| .|.++.+.+++|||||+|.+.++|.+|++.| ++. .++|++|+|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G--~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~---~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFG--EIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKL---IVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTS--CEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTC---EETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCC--CEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCe---eECCCEEEEEe
Confidence 34558999999999999999999999999 8999999999999999999999999999999 998 89999999999
Q ss_pred CC
Q 014230 338 GS 339 (428)
Q Consensus 338 a~ 339 (428)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 88
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=127.51 Aligned_cols=84 Identities=27% Similarity=0.361 Sum_probs=78.8
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 207 (428)
......++|||+|||.++++++|+++|+.||.|.+ +++..++.+++++|||||+|.+.++|.+|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456789999999999999999999999999999 9999999899999999999999999999999999999
Q ss_pred eCCeeEEEEEcc
Q 014230 208 LGSRQIRCNWAT 219 (428)
Q Consensus 208 ~~g~~i~v~~~~ 219 (428)
+.|+.|+|++++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=129.43 Aligned_cols=86 Identities=28% Similarity=0.567 Sum_probs=80.8
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
....+.++|||+|||..+++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.++|..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEccCC
Q 014230 216 NWATKG 221 (428)
Q Consensus 216 ~~~~~~ 221 (428)
+++.++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998765
No 90
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=129.04 Aligned_cols=88 Identities=23% Similarity=0.346 Sum_probs=81.8
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC------CceeCC
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT------GKWLGS 210 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~------~~~~~g 210 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|.+.+++.++.++|||||+|.+.++|.+|++.++ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eeEEEEEccCCCCC
Q 014230 211 RQIRCNWATKGAGN 224 (428)
Q Consensus 211 ~~i~v~~~~~~~~~ 224 (428)
+.|+|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 91
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=129.59 Aligned_cols=85 Identities=22% Similarity=0.444 Sum_probs=80.1
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||.++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 014230 218 ATKGA 222 (428)
Q Consensus 218 ~~~~~ 222 (428)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87653
No 92
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.4e-17 Score=127.38 Aligned_cols=87 Identities=22% Similarity=0.392 Sum_probs=80.1
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC---eeE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS---RQI 213 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g---~~i 213 (428)
.....++|||+|||.++++++|+++|+.||.|.++.+..++ +++++|||||+|.+.++|.+|++.|++..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999996 79999999999999999999999999999988 999
Q ss_pred EEEEccCCCCC
Q 014230 214 RCNWATKGAGN 224 (428)
Q Consensus 214 ~v~~~~~~~~~ 224 (428)
+|.++..+...
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876543
No 93
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=3.2e-18 Score=130.79 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=77.4
Q ss_pred CcceeEecCCCc------ccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-ee
Q 014230 140 GHFNIFVGDLSP------EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS-RQ 212 (428)
Q Consensus 140 ~~~~l~v~~lp~------~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-~~ 212 (428)
..++|||+|||. ++++++|+++|+.||.|.+++|++++.+++++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEEccC
Q 014230 213 IRCNWATK 220 (428)
Q Consensus 213 i~v~~~~~ 220 (428)
|+|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999865
No 94
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=128.05 Aligned_cols=88 Identities=27% Similarity=0.430 Sum_probs=81.7
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeeE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD-QKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQI 213 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i 213 (428)
......++|||+|||..+++++|+++|+.||.|.++.++++ +.+++++|||||+|.+.++|.+|++.| ++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556789999999999999999999999999999999998 789999999999999999999999999 9999999999
Q ss_pred EEEEccCCCC
Q 014230 214 RCNWATKGAG 223 (428)
Q Consensus 214 ~v~~~~~~~~ 223 (428)
+|+|+..+..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 95
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=124.96 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=72.7
Q ss_pred CceeEEEcCCCcccCHHHHH----HHHhccCCeeEEEEEEeCC---ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 261 QYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~~~i~~i~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
..++|||+|||+++++++|+ ++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++|++|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G--~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~---~~~gr~l 82 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHG--KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY---KIGSKKI 82 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE---EETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccC--cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC---EECCeEE
Confidence 44899999999999999999 9999999 9999999977 899999999999999999999999 9999999
Q ss_pred EEeeCCCCCC
Q 014230 334 KCSWGSKPTP 343 (428)
Q Consensus 334 ~v~~a~~~~~ 343 (428)
+|.|++....
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 96
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3.7e-17 Score=125.78 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=79.1
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+.++|||+|||.++++++|+++|+.|| |.++.+++++.+++++|||||+|.+.++|.+|+ .|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345668999999999999999999999996 999999999989999999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 014230 217 WATKGAG 223 (428)
Q Consensus 217 ~~~~~~~ 223 (428)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987554
No 97
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1e-17 Score=134.06 Aligned_cols=87 Identities=32% Similarity=0.453 Sum_probs=81.4
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
....+.++|||+|||.++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|++.|++..|+|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 014230 216 NWATKGA 222 (428)
Q Consensus 216 ~~~~~~~ 222 (428)
+|+..+.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987754
No 98
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=128.01 Aligned_cols=79 Identities=39% Similarity=0.637 Sum_probs=74.4
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
..++|||+|||.++++++|+++|+.|| .|.+|++.+++|||||+|.+.++|.+|++.|||. .++|++|+|.|++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFG--QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT---TIEGHVVKCYWGKE 98 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC---EETTEECEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC---EECCcEEEEEecCC
Confidence 447999999999999999999999999 9999999999999999999999999999999999 99999999999987
Q ss_pred CCCC
Q 014230 341 PTPP 344 (428)
Q Consensus 341 ~~~~ 344 (428)
....
T Consensus 99 ~~~~ 102 (109)
T 1x4g_A 99 SPDM 102 (109)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 99
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=128.02 Aligned_cols=86 Identities=41% Similarity=0.596 Sum_probs=80.9
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45668999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014230 218 ATKGAG 223 (428)
Q Consensus 218 ~~~~~~ 223 (428)
+..+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 100
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=126.59 Aligned_cols=85 Identities=24% Similarity=0.403 Sum_probs=78.6
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK---TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
.+.++|||+|||.++++++|+++|+.||.|.++.+..++. +++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3557999999999999999999999999999999998876 5689999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014230 216 NWATKGAG 223 (428)
Q Consensus 216 ~~~~~~~~ 223 (428)
+++..+..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99877543
No 101
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3e-17 Score=126.27 Aligned_cols=88 Identities=27% Similarity=0.539 Sum_probs=80.7
Q ss_pred ccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 135 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
.....+.++|||+|||+++++++|+++|+.||.|.++.+..+ ++.++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 334556789999999999999999999999999999999988 789999999999999999999999999999999999
Q ss_pred EEEccCCCCC
Q 014230 215 CNWATKGAGN 224 (428)
Q Consensus 215 v~~~~~~~~~ 224 (428)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999876543
No 102
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=2.5e-17 Score=118.90 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=68.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 45699999999999999999999999999999976 5699999999999999999999999999999999876
No 103
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=128.70 Aligned_cols=88 Identities=23% Similarity=0.325 Sum_probs=81.7
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCce--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~--------~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 207 (428)
.+....++|||+|||.++++++|+++|+.||.|. .+++..++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456678999999999999999999999999999 69999998899999999999999999999999999999
Q ss_pred eCCeeEEEEEccCCCC
Q 014230 208 LGSRQIRCNWATKGAG 223 (428)
Q Consensus 208 ~~g~~i~v~~~~~~~~ 223 (428)
+.|+.|+|+++..+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 104
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-17 Score=124.56 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=74.8
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
.....++|||+|||.++|+++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 85 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT---VVEGRKI 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTS--CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCC---EECCEEE
Confidence 344558999999999999999999999999 9999999977 799999999999999999999999 9999999
Q ss_pred EEeeCCCCCCC
Q 014230 334 KCSWGSKPTPP 344 (428)
Q Consensus 334 ~v~~a~~~~~~ 344 (428)
+|.|++.+...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 99999876443
No 105
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=128.66 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=71.0
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
++.++|||+|||+++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++|+.|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~---~~~gr~i 78 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYG--EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT---SVMGNII 78 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcC--CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC---EECCeEE
Confidence 3457999999999999999999999999 9999999754 689999999999999999999999 9999999
Q ss_pred EEeeCCCC
Q 014230 334 KCSWGSKP 341 (428)
Q Consensus 334 ~v~~a~~~ 341 (428)
+|.+++..
T Consensus 79 ~V~~a~~~ 86 (110)
T 3s8s_A 79 HAQLDIKG 86 (110)
T ss_dssp EEEECSTT
T ss_pred EEEECCCC
Confidence 99998653
No 106
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6e-17 Score=124.63 Aligned_cols=82 Identities=28% Similarity=0.558 Sum_probs=74.5
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
.....++|||+|||.++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .+.|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 85 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIG--PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGR---KILGKEV 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTE---EETTEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcC--CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCC---CcCCCeE
Confidence 334558999999999999999999999999 9999999885 789999999999999999999999 8999999
Q ss_pred EEeeCCCCCCC
Q 014230 334 KCSWGSKPTPP 344 (428)
Q Consensus 334 ~v~~a~~~~~~ 344 (428)
+|.|++.+...
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999875443
No 107
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=1.8e-17 Score=128.31 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=81.5
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCee
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL---GSRQ 212 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~ 212 (428)
....+.++|||+|||.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456678999999999999999999999999999999999998999999999999999999999999999987 8999
Q ss_pred EEEEEccCCCC
Q 014230 213 IRCNWATKGAG 223 (428)
Q Consensus 213 i~v~~~~~~~~ 223 (428)
|+|.++..+..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987554
No 108
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=2.5e-18 Score=137.19 Aligned_cols=82 Identities=18% Similarity=0.356 Sum_probs=77.6
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
..++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|+ .+++..+.|+.|+|+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999889999999999999999999999 799999999999999987
Q ss_pred CCC
Q 014230 220 KGA 222 (428)
Q Consensus 220 ~~~ 222 (428)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 109
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=2.1e-17 Score=128.80 Aligned_cols=85 Identities=20% Similarity=0.406 Sum_probs=80.1
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||..+++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|+..|+|..++|+.|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 014230 218 ATKGA 222 (428)
Q Consensus 218 ~~~~~ 222 (428)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 87654
No 110
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=129.28 Aligned_cols=84 Identities=32% Similarity=0.489 Sum_probs=78.8
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
...++|||+|||.++++++|+++|+.||.|.++.+..++ +++++|||||+|.+.++|.+|++.|++..+.|+.|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 445799999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014230 219 TKGAG 223 (428)
Q Consensus 219 ~~~~~ 223 (428)
.....
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 111
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.7e-17 Score=121.37 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=72.1
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
.+.++|||+|||.++++++|+++|++|| .|.++.+. +|||||+|.+.++|.+|++.||+. .++|++|+|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYG--KVLECDII--KNYGFVHIEDKTAAEDAIRNLHHY---KLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSS--CEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTC---BCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCC---ccCCcEEEEEECC
Confidence 3458999999999999999999999999 89999998 789999999999999999999999 8999999999998
Q ss_pred CCCCC
Q 014230 340 KPTPP 344 (428)
Q Consensus 340 ~~~~~ 344 (428)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnq_A 79 NKSKA 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 112
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=126.31 Aligned_cols=85 Identities=21% Similarity=0.421 Sum_probs=79.7
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCce-EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee----
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCS-DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ---- 212 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~---- 212 (428)
....++|||+|||.++++++|+++|+.||.|. ++++++++.+++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34568999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 014230 213 IRCNWATKGA 222 (428)
Q Consensus 213 i~v~~~~~~~ 222 (428)
|+|.|+....
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987653
No 113
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.7e-17 Score=124.78 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=73.6
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC---ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
.....++|||+|||.++|+++|+++|++|| .|.+|.+..+ +|||||+|.+.++|.+|++.||+. .|+|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYG--AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY---DYDGYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTC---EETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCC---EECCeEEE
Confidence 334558999999999999999999999999 8999999875 689999999999999999999999 99999999
Q ss_pred EeeCCCCCC
Q 014230 335 CSWGSKPTP 343 (428)
Q Consensus 335 v~~a~~~~~ 343 (428)
|.|++....
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999987544
No 114
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=125.74 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=78.7
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
....++|||+|||.++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568999999999999999999999999999998998888999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014230 218 ATKG 221 (428)
Q Consensus 218 ~~~~ 221 (428)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 115
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.9e-17 Score=122.69 Aligned_cols=80 Identities=28% Similarity=0.438 Sum_probs=73.5
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
+.++|||+|||.++++++|+++|++|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .+.|++|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFG--KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF---ELAGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC---CSSSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC---eeCCcEEE
Confidence 347999999999999999999999999 8999999876 689999999999999999999999 99999999
Q ss_pred EeeCCCCCCCC
Q 014230 335 CSWGSKPTPPG 345 (428)
Q Consensus 335 v~~a~~~~~~~ 345 (428)
|.|++.+....
T Consensus 79 V~~a~~~~~~~ 89 (95)
T 2dnz_A 79 VGHVTERLDGG 89 (95)
T ss_dssp EEESSCCCCCC
T ss_pred EEEcccccCCC
Confidence 99998765543
No 116
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=126.24 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCC--cccCceeeeec
Q 014230 52 DPSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR--HLFGQPIKVNW 128 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~ 128 (428)
...++++|||+|||. ++|++||+++|++||.|.+|.+++++ |||||+|.+.++|..|++.|++. .|.|++|.|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 345678999999999 99999999999999999999998765 79999999999999999998865 49999999999
Q ss_pred ccccC
Q 014230 129 AYASG 133 (428)
Q Consensus 129 ~~~~~ 133 (428)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 97544
No 117
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=125.63 Aligned_cols=86 Identities=26% Similarity=0.460 Sum_probs=79.4
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
...+.++|||+|||.++++++|+++|+.|| |.++.|++++.+ ++++|||||+|.+.++|.+|+ .|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345668999999999999999999999999 999999999887 899999999999999999999 89999999999999
Q ss_pred EEccCCCCC
Q 014230 216 NWATKGAGN 224 (428)
Q Consensus 216 ~~~~~~~~~ 224 (428)
+++..+...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 118
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=5e-17 Score=127.72 Aligned_cols=82 Identities=27% Similarity=0.360 Sum_probs=73.7
Q ss_pred CCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccC
Q 014230 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (428)
Q Consensus 257 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 330 (428)
...+..++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g 94 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFG--NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF---QIGM 94 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGS--CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC---EETT
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC---EECC
Confidence 3444568999999999999999999999999 8888888765 589999999999999999999999 9999
Q ss_pred eeEEEeeCCCCCC
Q 014230 331 KQMKCSWGSKPTP 343 (428)
Q Consensus 331 ~~l~v~~a~~~~~ 343 (428)
++|+|.|++.+..
T Consensus 95 ~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 95 KRLKVQLKRSKND 107 (115)
T ss_dssp EECEEECCCCSCC
T ss_pred EEEEEEEcCCCCc
Confidence 9999999986644
No 119
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=6.7e-18 Score=129.49 Aligned_cols=76 Identities=26% Similarity=0.493 Sum_probs=71.6
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
++|||+|||.++++++|+++|+.||.|.++.+..+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|+++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999865 7899999999999999999999999999999999999876
Q ss_pred C
Q 014230 222 A 222 (428)
Q Consensus 222 ~ 222 (428)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 120
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.2e-17 Score=124.51 Aligned_cols=85 Identities=38% Similarity=0.813 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+++.++ ++|||||+|.+.++|.+|+..|++..|.|+.|+|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 35567899999999999999999999999999999999875 3589999999999999999999999999999999999
Q ss_pred cccCCcc
Q 014230 130 YASGQRE 136 (428)
Q Consensus 130 ~~~~~~~ 136 (428)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqi_A 91 TTPSSQK 97 (103)
T ss_dssp CCTTCCC
T ss_pred CCCcccc
Confidence 8765543
No 121
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=7e-18 Score=136.20 Aligned_cols=119 Identities=23% Similarity=0.346 Sum_probs=73.7
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCcee
Q 014230 185 FGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264 (428)
Q Consensus 185 ~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (428)
+.|.+|.+...+..|++.+++....|+.- ..+.. .+......++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------------------------~~~~~~~~~~ 49 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------------------------PPPDVEGMTS 49 (135)
T ss_dssp ------------------------------CCSCC-----------------------------------SCSSGGGCCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------------------------CCCCCCCCCE
Confidence 46777888888888888887765544331 00100 0112223478
Q ss_pred EEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeC
Q 014230 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (428)
Q Consensus 265 l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (428)
|||+|||.++|+++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .|.|++|+|.|+
T Consensus 50 l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~---~i~g~~l~V~~a 124 (135)
T 2lea_A 50 LKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA---VLDGRELRVQMA 124 (135)
T ss_dssp EEEECCCSSCHHHHHHHHHGGGS--CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC---CSSSSCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEEEC
Confidence 99999999999999999999999 8999998765 689999999999999999999999 899999999999
Q ss_pred CCCCCC
Q 014230 339 SKPTPP 344 (428)
Q Consensus 339 ~~~~~~ 344 (428)
+...++
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875544
No 122
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.7e-17 Score=123.39 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=73.1
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
+.++|||+|||.++|+++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .+.|++|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 81 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYG--PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ---VFQGRMLH 81 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTS--CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE---ESSSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC---EECCcEEE
Confidence 458999999999999999999999999 9999999876 599999999999999999999999 99999999
Q ss_pred EeeCCCCCCC
Q 014230 335 CSWGSKPTPP 344 (428)
Q Consensus 335 v~~a~~~~~~ 344 (428)
|.|++.+...
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 9999876543
No 123
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.4e-17 Score=124.11 Aligned_cols=84 Identities=26% Similarity=0.382 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC--CceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~--~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
...+.++|||+|||.++|+++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 456678999999999999999999999999999999998753 689999999999999999999999999999999999
Q ss_pred cccCCc
Q 014230 130 YASGQR 135 (428)
Q Consensus 130 ~~~~~~ 135 (428)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 876544
No 124
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=3.9e-17 Score=121.49 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=75.5
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+.++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++ +++..+.|+.|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999999899999999999999999999996 58889999999998
Q ss_pred Ec
Q 014230 217 WA 218 (428)
Q Consensus 217 ~~ 218 (428)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 125
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=132.90 Aligned_cols=88 Identities=26% Similarity=0.446 Sum_probs=82.0
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
.....++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 014230 217 WATKGAGN 224 (428)
Q Consensus 217 ~~~~~~~~ 224 (428)
++..+...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 126
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-16 Score=124.67 Aligned_cols=84 Identities=19% Similarity=0.379 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC-CceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~-~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
...+.++|||+|||.++|+++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.||+..|.|+.|+|.|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 355678999999999999999999999999999999977654 7899999999999999999999999999999999997
Q ss_pred ccCCc
Q 014230 131 ASGQR 135 (428)
Q Consensus 131 ~~~~~ 135 (428)
+....
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76543
No 127
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-17 Score=128.15 Aligned_cols=87 Identities=33% Similarity=0.507 Sum_probs=80.3
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
....+.++|||+|||.++++++|+++|+.||.|.+++|++++.+++++|||||+|.+.++|.+|++.+++ .+.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3455678999999999999999999999999999999999998999999999999999999999999998 899999999
Q ss_pred EEccCCCC
Q 014230 216 NWATKGAG 223 (428)
Q Consensus 216 ~~~~~~~~ 223 (428)
+++.....
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99976543
No 128
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.6e-17 Score=123.28 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHh--CCCcccCceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL--NGRHLFGQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~~~ 130 (428)
..++++|||+|||.++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+ ++..+.|++|+|.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 456789999999999999999999999999999998876 589999999999999999976 4677999999999997
Q ss_pred ccCCc
Q 014230 131 ASGQR 135 (428)
Q Consensus 131 ~~~~~ 135 (428)
.+...
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 66543
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.6e-17 Score=127.42 Aligned_cols=75 Identities=31% Similarity=0.573 Sum_probs=71.9
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
..++|||+|||.++++++|+++|+.|| .|.++++.+++|||||+|.+.++|.+|+..|||. .++|+.|+|.|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFG--FILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF---PFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTS--CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC---EETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCC--CEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEEeccC
Confidence 347999999999999999999999999 8999999999999999999999999999999999 99999999999875
No 130
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5e-17 Score=125.06 Aligned_cols=85 Identities=22% Similarity=0.440 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeec--CCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
.+.+.++|||+|||.++|+++|+++|+.||.|.+|++..+ ..+|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4557788999999999999999999999999999999987 44689999999999999999999999999999999999
Q ss_pred cccCCcc
Q 014230 130 YASGQRE 136 (428)
Q Consensus 130 ~~~~~~~ 136 (428)
.++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 8766544
No 131
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=8.8e-18 Score=125.83 Aligned_cols=80 Identities=14% Similarity=0.273 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC-CceeEEEeecC----CCceEEEEEccHHHHHHHHHHhC-CCcccCceeeeecc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLN-GRHLFGQPIKVNWA 129 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~-~~~~~g~~l~v~~~ 129 (428)
+.+|||+|||.++|+++|+++|++|| .|.+|++++++ ++|||||+|.+.++|.+|++.++ +..+.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36799999999999999999999999 89999998864 46899999999999999998774 56799999999999
Q ss_pred cccCCc
Q 014230 130 YASGQR 135 (428)
Q Consensus 130 ~~~~~~ 135 (428)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 132
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=124.18 Aligned_cols=83 Identities=25% Similarity=0.449 Sum_probs=77.2
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
.....++|||+|||..+++++|+++|+.||.|.++.+..++. ++++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345568999999999999999999999999999999999965 8999999999999999999999999999999999999
Q ss_pred EccC
Q 014230 217 WATK 220 (428)
Q Consensus 217 ~~~~ 220 (428)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8753
No 133
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=124.18 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=72.1
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeC---------CccEEEEEeCCHHHHHHHHHHhcCCCcccccCe
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (428)
+.++|||+|||.++++++|+++|+.|| .|.+|.+.+ .+|||||+|.+.++|.+|++.||+. .++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~ 78 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVG--AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH---TVDGH 78 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC---EETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC---eeCCe
Confidence 347899999999999999999999999 889988874 3589999999999999999999999 99999
Q ss_pred eEEEeeCCCCCCCC
Q 014230 332 QMKCSWGSKPTPPG 345 (428)
Q Consensus 332 ~l~v~~a~~~~~~~ 345 (428)
+|+|.|++......
T Consensus 79 ~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 79 KLEVRISERATKPA 92 (98)
T ss_dssp ECEEECSSCSSCCC
T ss_pred EEEEEEccCCCCCC
Confidence 99999998765443
No 134
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-16 Score=123.25 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=73.4
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccC-----eeEE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-----KQMK 334 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g-----~~l~ 334 (428)
...++|||+|||+++|+++|+++|++|| .|.+|.+..+ |||||+|.+.++|.+|++.||+. .|.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT---KFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGS--CEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSE---EEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcC---CccCCcCcceEEE
Confidence 3458999999999999999999999999 9999999998 99999999999999999999999 8999 9999
Q ss_pred EeeCCCCCCC
Q 014230 335 CSWGSKPTPP 344 (428)
Q Consensus 335 v~~a~~~~~~ 344 (428)
|.+++.+...
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999876543
No 135
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-18 Score=141.67 Aligned_cols=83 Identities=34% Similarity=0.560 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
+.+.++|||+|||.++|+++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999998764 58999999999999999999999999999999999
Q ss_pred ccccCCc
Q 014230 129 AYASGQR 135 (428)
Q Consensus 129 ~~~~~~~ 135 (428)
+.....+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 136
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=3.8e-17 Score=122.18 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=76.5
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
.++|||+|||.++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|+ .+++..+.|+.|+|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 469999999999999999999999999999999999889999999999999999999999 8999999999999999876
Q ss_pred C
Q 014230 221 G 221 (428)
Q Consensus 221 ~ 221 (428)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 137
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9e-17 Score=124.57 Aligned_cols=81 Identities=23% Similarity=0.514 Sum_probs=74.0
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-------ccEEEEEeCCHHHHHHHHHHh-cCCCcccccC
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMG-NTTQSSYLFG 330 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-------~g~afV~f~~~~~A~~A~~~l-~g~~~~~~~g 330 (428)
....++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.| |+. .|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~---~~~g 86 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFG--ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST---HLYG 86 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC---BSSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccC--CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC---eECC
Confidence 34558999999999999999999999999 9999999876 799999999999999999999 899 8999
Q ss_pred eeEEEeeCCCCCCC
Q 014230 331 KQMKCSWGSKPTPP 344 (428)
Q Consensus 331 ~~l~v~~a~~~~~~ 344 (428)
+.|+|.|++.....
T Consensus 87 ~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 87 RRLVLEWADSEVTV 100 (107)
T ss_dssp CBCEEEECCCCCCC
T ss_pred CEEEEEeCCCCCCC
Confidence 99999999876443
No 138
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.8e-17 Score=122.45 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
.....++|||+|||.++|+++|+++|+.||.|. +.++.++.+|||||+|.+.++|.+|++.||+..|.|+.|+|.++.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 455678999999999999999999999999997 7888888889999999999999999999999999999999999876
Q ss_pred cC
Q 014230 132 SG 133 (428)
Q Consensus 132 ~~ 133 (428)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 139
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=5.9e-17 Score=125.62 Aligned_cols=83 Identities=27% Similarity=0.365 Sum_probs=78.1
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
....+.++|||+|||..+++++|+++|+.||.|.++.+..++ +++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567899999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred EEcc
Q 014230 216 NWAT 219 (428)
Q Consensus 216 ~~~~ 219 (428)
+++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 140
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.1e-17 Score=124.56 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=73.8
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
..+.++|||+|||.++++++|+++|++|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .|+|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~ 86 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFG--SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF---GYDHLI 86 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTC--CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC---EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC---eeCCcE
Confidence 34558999999999999999999999999 8999999865 589999999999999999999999 999999
Q ss_pred EEEeeCCCCCCC
Q 014230 333 MKCSWGSKPTPP 344 (428)
Q Consensus 333 l~v~~a~~~~~~ 344 (428)
|+|.|++.+...
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 999999876544
No 141
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9.4e-17 Score=122.78 Aligned_cols=80 Identities=15% Similarity=0.307 Sum_probs=72.9
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
..+.++|||+|||.++|+++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .++|++|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 88 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHG--TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM---TIKENII 88 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE---ESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC---EECCEEE
Confidence 34457899999999999999999999999 8999999875 599999999999999999999999 9999999
Q ss_pred EEeeCCCCCC
Q 014230 334 KCSWGSKPTP 343 (428)
Q Consensus 334 ~v~~a~~~~~ 343 (428)
+|.|++.+..
T Consensus 89 ~v~~a~~~~~ 98 (100)
T 2do4_A 89 KVAISNSGPS 98 (100)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 9999986543
No 142
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=121.69 Aligned_cols=76 Identities=34% Similarity=0.648 Sum_probs=69.5
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
+.++|||+|||.++++++|+++|+.|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .++|+.|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~ 79 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ---WLGGRQIR 79 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC---EECCeEEE
Confidence 347999999999999999999999999 8999999875 689999999999999999999999 99999999
Q ss_pred EeeCCCC
Q 014230 335 CSWGSKP 341 (428)
Q Consensus 335 v~~a~~~ 341 (428)
|.|++.+
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9998864
No 143
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=135.88 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=76.8
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCC--CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..++|||+|||+++++++|+++|+.|| .|.+++++.|+.+++++|||||+|.+.++|.+|++.|+|..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 347999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 014230 218 ATK 220 (428)
Q Consensus 218 ~~~ 220 (428)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 865
No 144
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=126.42 Aligned_cols=86 Identities=38% Similarity=0.771 Sum_probs=79.8
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhcc-CCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCeeEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIR 214 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~g~~i~ 214 (428)
+..+.++|||+|||.++++++|+++|+. ||.|.++.+++++ +++++|||||+|.+.++|.+|++.|++.. +.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456689999999999999999999999 9999999999997 99999999999999999999999999999 9999999
Q ss_pred EEEccCCCC
Q 014230 215 CNWATKGAG 223 (428)
Q Consensus 215 v~~~~~~~~ 223 (428)
|.++..+..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999876543
No 145
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.2e-17 Score=124.04 Aligned_cols=84 Identities=33% Similarity=0.626 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
.+.+.++|||+|||.++|+++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45567899999999999999999999999999999998875 35899999999999999999999999999999999
Q ss_pred cccccCCc
Q 014230 128 WAYASGQR 135 (428)
Q Consensus 128 ~~~~~~~~ 135 (428)
++.+....
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99776543
No 146
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=127.07 Aligned_cols=81 Identities=26% Similarity=0.401 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC--CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
.....++|||+|||.++|+++|+++|+.||.|.+|++..++ .+|||||+|.+.++|++|++.|++..|.|+.|+|.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45567889999999999999999999999999999998875 3689999999999999999999999999999999998
Q ss_pred ccc
Q 014230 130 YAS 132 (428)
Q Consensus 130 ~~~ 132 (428)
.++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 147
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=126.86 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCC--CcccCceeeeecc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWA 129 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~ 129 (428)
...++++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.+++ ..|.|++|+|.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 3456789999999999999999999999999999999987 48999999999999999998874 6799999999999
Q ss_pred cccCCcc
Q 014230 130 YASGQRE 136 (428)
Q Consensus 130 ~~~~~~~ 136 (428)
..+....
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 7765443
No 148
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=127.25 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=72.5
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
.++|||+|||+++++++|+++|++|| .|.+|.+.+++|||||+|.+.++|.+|++.|||. .++|++|+|.|++..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFG--SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS---KFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTC---BSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC---EECCeEEEEEECCCC
Confidence 47999999999999999999999999 9999999999999999999999999999999999 899999999998764
Q ss_pred C
Q 014230 342 T 342 (428)
Q Consensus 342 ~ 342 (428)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 149
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=126.65 Aligned_cols=81 Identities=9% Similarity=0.113 Sum_probs=75.6
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
....++|||+|||.++++++|+++|+.||.|.+|.+++|+. +.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999976 9999999999999999999998 899999999999998
Q ss_pred ccC
Q 014230 218 ATK 220 (428)
Q Consensus 218 ~~~ 220 (428)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 654
No 150
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-16 Score=124.82 Aligned_cols=85 Identities=26% Similarity=0.343 Sum_probs=78.7
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
.....++|||+|||.++++++|+++|+.||.|.++.+..++ +++++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34556899999999999999999999999999999999996 68999999999999999999999999999999999999
Q ss_pred EccCCC
Q 014230 217 WATKGA 222 (428)
Q Consensus 217 ~~~~~~ 222 (428)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987644
No 151
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=5e-17 Score=130.00 Aligned_cols=83 Identities=24% Similarity=0.353 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeee
Q 014230 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (428)
Q Consensus 51 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (428)
..+.+.++|||+|||.++|+++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 346677889999999999999999999999999999998864 4689999999999999999999999999999999
Q ss_pred ecccccC
Q 014230 127 NWAYASG 133 (428)
Q Consensus 127 ~~~~~~~ 133 (428)
.|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987654
No 152
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=121.83 Aligned_cols=79 Identities=20% Similarity=0.459 Sum_probs=71.9
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
.+.++|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++ ||+. .++|++|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~---~~~g~~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFG--VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH---DIMGKKV 81 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSS--CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC---BSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC---EECCeEE
Confidence 3458999999999999999999999999 9999999865 7999999999999999998 9999 8999999
Q ss_pred EEeeCCCCCCC
Q 014230 334 KCSWGSKPTPP 344 (428)
Q Consensus 334 ~v~~a~~~~~~ 344 (428)
+|.|++.+...
T Consensus 82 ~V~~a~~~~~~ 92 (99)
T 2dgs_A 82 EVKRAEPRDSK 92 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCccc
Confidence 99999865443
No 153
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.9e-17 Score=123.24 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCC--cccCceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR--HLFGQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~~~ 130 (428)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .+.|++|+|.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 446689999999999999999999999999999998875 589999999999999999988764 4899999999997
Q ss_pred ccCC
Q 014230 131 ASGQ 134 (428)
Q Consensus 131 ~~~~ 134 (428)
.+..
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6553
No 154
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=121.91 Aligned_cols=82 Identities=20% Similarity=0.369 Sum_probs=76.4
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR-SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~-~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
.++|||+|||.++++++|+++|+.||.|.++.+..++.++. ++|||||+|.+.++|.+|++.|+|..++|+.|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46999999999999999999999999999999999876655 99999999999999999999999999999999999987
Q ss_pred CCC
Q 014230 220 KGA 222 (428)
Q Consensus 220 ~~~ 222 (428)
+..
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 155
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-17 Score=122.31 Aligned_cols=76 Identities=33% Similarity=0.487 Sum_probs=70.6
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
.++.++|||+|||.++++++|+++|++|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .++|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~ 87 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYG--KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK---QLFGRV 87 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTS--CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE---EETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC---eeCCcE
Confidence 34558999999999999999999999999 8999999765 689999999999999999999999 999999
Q ss_pred EEEeeCC
Q 014230 333 MKCSWGS 339 (428)
Q Consensus 333 l~v~~a~ 339 (428)
|+|.|++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999985
No 156
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=126.05 Aligned_cols=86 Identities=30% Similarity=0.397 Sum_probs=80.2
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+.++|||+|||..+++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++. ++..+.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 445668999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred EccCCCC
Q 014230 217 WATKGAG 223 (428)
Q Consensus 217 ~~~~~~~ 223 (428)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9877654
No 157
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=125.46 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=72.0
Q ss_pred CceeEEE--cCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccc-----cCeeE
Q 014230 261 QYTTVYV--GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL-----FGKQM 333 (428)
Q Consensus 261 ~~~~l~V--~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~-----~g~~l 333 (428)
+.++||| +||++++++++|+++|++|| .|.+|.+..+||||||+|.+.++|.+|++.|||. .+ .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG--~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~---~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK---EVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHS--CEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC---EEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EEccccCCCcEE
Confidence 4578999 77999999999999999999 9999999999999999999999999999999999 77 68999
Q ss_pred EEeeCCCCCCC
Q 014230 334 KCSWGSKPTPP 344 (428)
Q Consensus 334 ~v~~a~~~~~~ 344 (428)
.|.|+++....
T Consensus 99 ~v~~a~~~p~~ 109 (114)
T 2cq2_A 99 YLNFVEKVQWS 109 (114)
T ss_dssp EEEEESCCCCS
T ss_pred EEEecccCccc
Confidence 99999865443
No 158
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=5.7e-17 Score=119.44 Aligned_cols=74 Identities=24% Similarity=0.472 Sum_probs=70.1
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
.+|||+|||.++++++|+++|+.|| .|.++.+.++ +|||||+|.+.++|.+|++.|||. .++|++|+|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ---DLNGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTST--TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC---EETTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC---eeCCcEEEEE
Confidence 6899999999999999999999999 8999999866 799999999999999999999999 9999999999
Q ss_pred eCCCC
Q 014230 337 WGSKP 341 (428)
Q Consensus 337 ~a~~~ 341 (428)
|++.+
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 99864
No 159
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=5.5e-17 Score=125.94 Aligned_cols=86 Identities=30% Similarity=0.390 Sum_probs=76.2
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+.++|||+|||.++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|++.+ +..++|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456689999999999999999999999999999999999889999999999999999999999975 589999999999
Q ss_pred EccCCCC
Q 014230 217 WATKGAG 223 (428)
Q Consensus 217 ~~~~~~~ 223 (428)
++..+..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9877543
No 160
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=4.6e-17 Score=120.53 Aligned_cols=74 Identities=34% Similarity=0.587 Sum_probs=69.4
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
+.++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.|||. .++|++|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 80 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES---ELFGRTIR 80 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGS--CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC---EETTEECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccC--CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC---EECCcEEE
Confidence 448999999999999999999999999 8999998754 799999999999999999999999 99999999
Q ss_pred EeeCC
Q 014230 335 CSWGS 339 (428)
Q Consensus 335 v~~a~ 339 (428)
|.|++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99985
No 161
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=1.9e-16 Score=121.67 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=71.5
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
.+.++|||+|||.++|+++|+++|++|| .|.+|.+. ++||||+|.+.++|.+|++.||+. .|.|+.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFG--KLERVKKL--KDYAFIHFDERDGAVKAMEEMNGK---DLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHS--CEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTE---EETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCC---ccCCCEEEEEEcC
Confidence 3457899999999999999999999999 89999988 469999999999999999999999 8999999999998
Q ss_pred CCCCC
Q 014230 340 KPTPP 344 (428)
Q Consensus 340 ~~~~~ 344 (428)
.+...
T Consensus 82 ~~~~~ 86 (103)
T 2dgu_A 82 PPDQK 86 (103)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
No 162
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=124.80 Aligned_cols=80 Identities=31% Similarity=0.517 Sum_probs=73.2
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
.+.++|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .|+|++|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES---ELFGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTS--CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE---EETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCcEE
Confidence 3458999999999999999999999999 8999999765 799999999999999999999999 9999999
Q ss_pred EEeeCCCCCCC
Q 014230 334 KCSWGSKPTPP 344 (428)
Q Consensus 334 ~v~~a~~~~~~ 344 (428)
+|.|++.+...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2cqb_A 85 RVNLAKPMRIK 95 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876544
No 163
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=2.5e-17 Score=124.80 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=75.9
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
.+.++|||+|||.++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cC
Q 014230 219 TK 220 (428)
Q Consensus 219 ~~ 220 (428)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 164
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=1.2e-16 Score=123.38 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=73.1
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccC---e
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG---K 331 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g---~ 331 (428)
...++|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .+.| +
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~gg~~~ 87 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFG--VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS---QTMPGASS 87 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC---CCCTTCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC---ccCCCCCc
Confidence 3458999999999999999999999999 8999999877 799999999999999999999999 7887 9
Q ss_pred eEEEeeCCCCCCC
Q 014230 332 QMKCSWGSKPTPP 344 (428)
Q Consensus 332 ~l~v~~a~~~~~~ 344 (428)
+|+|.|++.+...
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999875443
No 165
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=122.91 Aligned_cols=83 Identities=24% Similarity=0.464 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
..+.++|||+|||.++|+++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4566889999999999999999999999999999998874 468999999999999999999999999999999999
Q ss_pred ccccCCc
Q 014230 129 AYASGQR 135 (428)
Q Consensus 129 ~~~~~~~ 135 (428)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 166
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=6.6e-17 Score=121.65 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=72.5
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
.+.++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v 80 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECG--HVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGM---KLSGREIDV 80 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTS--CEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTC---CBTTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCcEEEE
Confidence 3458999999999999999999999999 8999998864 799999999999999999999999 899999999
Q ss_pred eeCCCCCC
Q 014230 336 SWGSKPTP 343 (428)
Q Consensus 336 ~~a~~~~~ 343 (428)
.|++.+..
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99987544
No 167
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=1.5e-16 Score=126.72 Aligned_cols=86 Identities=24% Similarity=0.340 Sum_probs=80.0
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
.....++|||+|||..+++++|+++|+.||.|.++++..++ +++++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 014230 217 WATKGAG 223 (428)
Q Consensus 217 ~~~~~~~ 223 (428)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9977543
No 168
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-16 Score=121.90 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=78.9
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
....+.++|||+|||.++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|+. ++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344566899999999999999999999999999999999998899999999999999999999998 578999999999
Q ss_pred EEccCCCC
Q 014230 216 NWATKGAG 223 (428)
Q Consensus 216 ~~~~~~~~ 223 (428)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987654
No 169
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=119.55 Aligned_cols=79 Identities=25% Similarity=0.397 Sum_probs=72.0
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeC
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (428)
....++|||+|||.++++++|+++|++|| .|.+|.+.++ ||||+|.+.++|.+|++.||+. .+.|+.|+|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYG--PVIECDIVKD--YAFVHMERAEDAVEAIRGLDNT---EFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTS--CCCEEEECSS--EEEEEESCHHHHHHHHHHHTTE---EETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEECC--EEEEEECCHHHHHHHHHHhCCC---eeCCcEEEEEEc
Confidence 34458999999999999999999999999 8999999854 9999999999999999999999 999999999999
Q ss_pred CCCCCC
Q 014230 339 SKPTPP 344 (428)
Q Consensus 339 ~~~~~~ 344 (428)
+.+...
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 876443
No 170
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.9e-17 Score=123.39 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
..+.++|||+|||.++|+++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998864 368999999999999999999999999999999999
Q ss_pred ccccCCcc
Q 014230 129 AYASGQRE 136 (428)
Q Consensus 129 ~~~~~~~~ 136 (428)
+.......
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 98765443
No 171
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=123.47 Aligned_cols=82 Identities=29% Similarity=0.425 Sum_probs=74.0
Q ss_pred CCCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCccccc
Q 014230 256 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (428)
Q Consensus 256 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 329 (428)
+...++.++|||+|||.++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~---~i~ 94 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFG--RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF---ELA 94 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTS--CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC---CSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC---EEC
Confidence 34445568999999999999999999999999 8999998865 689999999999999999999999 999
Q ss_pred CeeEEEeeCCCCC
Q 014230 330 GKQMKCSWGSKPT 342 (428)
Q Consensus 330 g~~l~v~~a~~~~ 342 (428)
|++|+|.|++++.
T Consensus 95 g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 95 GRPMKVGHVTERT 107 (108)
T ss_dssp SSCCEEECSCSSC
T ss_pred CEEEEEEEcccCC
Confidence 9999999998653
No 172
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=9.4e-18 Score=161.86 Aligned_cols=86 Identities=20% Similarity=0.438 Sum_probs=80.4
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||..+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014230 218 ATKGAG 223 (428)
Q Consensus 218 ~~~~~~ 223 (428)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 976543
No 173
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=126.12 Aligned_cols=83 Identities=29% Similarity=0.553 Sum_probs=78.8
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
+.++|||+|||..+++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCC
Q 014230 220 KGA 222 (428)
Q Consensus 220 ~~~ 222 (428)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 174
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=119.40 Aligned_cols=80 Identities=29% Similarity=0.493 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
+.+.++|||+|||.++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.||+..+.|+.|+|.++.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 4567899999999999999999999999999999997 479999999999999999999999999999999999876
Q ss_pred CCcc
Q 014230 133 GQRE 136 (428)
Q Consensus 133 ~~~~ 136 (428)
....
T Consensus 81 ~~~~ 84 (90)
T 2dnq_A 81 SKAS 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 175
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=7.1e-17 Score=122.46 Aligned_cols=76 Identities=21% Similarity=0.396 Sum_probs=71.4
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
.++|||+|||.++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++|+.|+|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVG--PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY---QLGSRFLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC---EETTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC---eECCeEEEE
Confidence 37899999999999999999999999 8999999865 799999999999999999999999 999999999
Q ss_pred eeCCCCC
Q 014230 336 SWGSKPT 342 (428)
Q Consensus 336 ~~a~~~~ 342 (428)
.|++.+.
T Consensus 77 ~~a~~~~ 83 (96)
T 2x1f_A 77 GYSSNSD 83 (96)
T ss_dssp EECSCSS
T ss_pred EEcCCCC
Confidence 9998754
No 176
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-17 Score=124.09 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=75.9
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
.+.++|||+|||.++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|++.||+..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999988665
Q ss_pred c
Q 014230 219 T 219 (428)
Q Consensus 219 ~ 219 (428)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 177
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2e-17 Score=119.38 Aligned_cols=75 Identities=31% Similarity=0.545 Sum_probs=71.9
Q ss_pred eeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
+|||+|||+++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|++|++ +++..++|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999874
No 178
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=126.19 Aligned_cols=83 Identities=28% Similarity=0.483 Sum_probs=74.7
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
.....++|||+|||.++++++|+++|+.|| |.++++.+++ .+++++|||||+|.+.++|.+|+ .+++..+.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345668999999999999999999999999 9999999997 58999999999999999999999 89999999999999
Q ss_pred EEccCC
Q 014230 216 NWATKG 221 (428)
Q Consensus 216 ~~~~~~ 221 (428)
+++..+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998764
No 179
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.9e-17 Score=121.46 Aligned_cols=78 Identities=28% Similarity=0.332 Sum_probs=71.5
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCe
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (428)
...+.++|||+|||.++++++|+++|++|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .++|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~ 85 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYG--PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM---ELDGR 85 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTS--CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE---EETTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC---EECCE
Confidence 344568999999999999999999999999 8999999754 689999999999999999999999 99999
Q ss_pred eEEEeeCCC
Q 014230 332 QMKCSWGSK 340 (428)
Q Consensus 332 ~l~v~~a~~ 340 (428)
+|+|.|++.
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999874
No 180
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=119.11 Aligned_cols=82 Identities=17% Similarity=0.345 Sum_probs=76.8
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
....++|||+|||.++++++|+++|+.| .|.+++++++ .+++++|||||+|.+.++|.+|+. +++..+.|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456899999999999999999999999 9999999999 789999999999999999999999 999999999999999
Q ss_pred ccCCC
Q 014230 218 ATKGA 222 (428)
Q Consensus 218 ~~~~~ 222 (428)
+..+.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 87753
No 181
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=9.9e-17 Score=126.69 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
...+.++|||+|||.++++++|+++|++||.|.+|+++.++ .+|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45667899999999999999999999999999999998774 36899999999999999999999999999999999
Q ss_pred cc
Q 014230 128 WA 129 (428)
Q Consensus 128 ~~ 129 (428)
|+
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 182
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=132.84 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=79.6
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK----WLGS 210 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g 210 (428)
...+.++|||+|||+++++++|+++|+.||.|.. |+|++|+.+++++|||||+|.+. +|.+|+..|++. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999998999999999999999 999999999999 9999
Q ss_pred eeEEEEEccCCCC
Q 014230 211 RQIRCNWATKGAG 223 (428)
Q Consensus 211 ~~i~v~~~~~~~~ 223 (428)
+.|+|+++.+...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999977543
No 183
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=118.96 Aligned_cols=77 Identities=26% Similarity=0.379 Sum_probs=71.0
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
...++|||+|||.++|+++|+++|++|| .|.+|.+.++ ||||+|.+.++|.+|++.||+. .++|++|+|.|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRG--RVIECDVVKD--YAFVHMEKEADAKAAIAQLNGK---EVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHS--CEEEEEECSS--CEEEEESCHHHHHHHHHHHTTC---EETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCC--CEEEEEEECC--EEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEECC
Confidence 3447899999999999999999999999 8999999854 9999999999999999999999 9999999999998
Q ss_pred CCCC
Q 014230 340 KPTP 343 (428)
Q Consensus 340 ~~~~ 343 (428)
....
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 184
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=6.9e-17 Score=122.34 Aligned_cols=78 Identities=31% Similarity=0.454 Sum_probs=72.0
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
.....++|||+|||.++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .++|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~ 86 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAG--PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGI---RLYGRP 86 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTC---EETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCC---EECCCE
Confidence 334558999999999999999999999999 8999999876 789999999999999999999999 999999
Q ss_pred EEEeeCCC
Q 014230 333 MKCSWGSK 340 (428)
Q Consensus 333 l~v~~a~~ 340 (428)
|+|.|++.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999874
No 185
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.6e-17 Score=121.62 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=74.9
Q ss_pred CCcceeEecCCCcccCHHHHH----HHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 139 SGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
.+.++|||+|||.++++++|+ ++|+.||.|.++++..++.+ +|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 445799999999999999999 99999999999999988654 89999999999999999999999999999999
Q ss_pred EEEccCCC
Q 014230 215 CNWATKGA 222 (428)
Q Consensus 215 v~~~~~~~ 222 (428)
|+++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 186
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=125.34 Aligned_cols=78 Identities=29% Similarity=0.436 Sum_probs=72.5
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
.++|||+|||.++|+++|+++|++|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||. .++|+.|+|.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~---~~~g~~l~V~ 81 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHG--PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGK---SLHGKAIKVE 81 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSS--CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSC---BCSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCC---EECCEEEEEE
Confidence 47899999999999999999999999 8999999886 499999999999999999999999 9999999999
Q ss_pred eCCCCCCC
Q 014230 337 WGSKPTPP 344 (428)
Q Consensus 337 ~a~~~~~~ 344 (428)
|++.+...
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876543
No 187
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9e-17 Score=124.34 Aligned_cols=79 Identities=27% Similarity=0.426 Sum_probs=72.5
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
....++|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||. .++|+.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~ 94 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYG--EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ---DLMGQP 94 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC---BSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC---EECCcE
Confidence 34558999999999999999999999999 8999999765 699999999999999999999999 999999
Q ss_pred EEEeeCCCCC
Q 014230 333 MKCSWGSKPT 342 (428)
Q Consensus 333 l~v~~a~~~~ 342 (428)
|+|.|++.+.
T Consensus 95 l~V~~a~~~~ 104 (106)
T 1p27_B 95 ISVDWCFVRG 104 (106)
T ss_dssp CEEEESEESS
T ss_pred EEEEeecCCC
Confidence 9999998654
No 188
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=119.98 Aligned_cols=79 Identities=18% Similarity=0.334 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCccc--Cceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF--GQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~ 130 (428)
..+.++|||+|||.++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++.||+..+. |+.|+|.|+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 445678999999999999999999999999999999876 579999999999999999999999999 9999999997
Q ss_pred ccC
Q 014230 131 ASG 133 (428)
Q Consensus 131 ~~~ 133 (428)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 189
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=4.4e-17 Score=125.96 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccC-CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
+...++|||+|||+++|+++|+++|+.|| .|..+.+..++++|||||+|.+.++|++|++.||+..|.|+.|+|.++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34557899999999999999999999999 89999997667789999999999999999999999999999999999865
Q ss_pred c
Q 014230 132 S 132 (428)
Q Consensus 132 ~ 132 (428)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 190
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=1.4e-16 Score=132.39 Aligned_cols=86 Identities=24% Similarity=0.398 Sum_probs=80.9
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014230 218 ATKGAG 223 (428)
Q Consensus 218 ~~~~~~ 223 (428)
+.....
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987544
No 191
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=123.33 Aligned_cols=84 Identities=19% Similarity=0.362 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhC------CCcccC
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLN------GRHLFG 121 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~------~~~~~g 121 (428)
...+.++|||+|||.++|+++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|+..+| +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 35567889999999999999999999999999999999874 46899999999999999999999 999999
Q ss_pred ceeeeecccccCCc
Q 014230 122 QPIKVNWAYASGQR 135 (428)
Q Consensus 122 ~~l~v~~~~~~~~~ 135 (428)
+.|+|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876544
No 192
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.2e-17 Score=123.91 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCC--CcccCceeeeec
Q 014230 52 DPSTCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNW 128 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~ 128 (428)
...++++|||+|||.+ +|+++|+++|++||.|.+|++++. +|||||+|.+.++|.+|++.|++ ..|.|++|+|.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3556789999999998 999999999999999999999754 58999999999999999998864 569999999999
Q ss_pred ccccCC
Q 014230 129 AYASGQ 134 (428)
Q Consensus 129 ~~~~~~ 134 (428)
+..+..
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 876543
No 193
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1.1e-16 Score=120.41 Aligned_cols=84 Identities=27% Similarity=0.373 Sum_probs=77.3
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..+.++|||+|||.++++++|+++|+.||.|.++.+.++ +++++|||||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999874 789999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014230 218 ATKGAG 223 (428)
Q Consensus 218 ~~~~~~ 223 (428)
+.....
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 877543
No 194
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=120.17 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC-----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~-----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
..++|||+|||.++|+++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 34789999999999999999999999999999998876 5789999999999999999999999999999999998
Q ss_pred cccC
Q 014230 130 YASG 133 (428)
Q Consensus 130 ~~~~ 133 (428)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6554
No 195
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=7.3e-17 Score=129.04 Aligned_cols=88 Identities=22% Similarity=0.418 Sum_probs=81.5
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+.++|||+|||..+++++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 014230 217 WATKGAGN 224 (428)
Q Consensus 217 ~~~~~~~~ 224 (428)
|+..+...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99765443
No 196
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1.4e-16 Score=130.37 Aligned_cols=81 Identities=25% Similarity=0.387 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccC--ceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~ 130 (428)
++...+|||+||++.+|+++|+++|++||.|.+|++..++++|||||+|.+.++|++|++.|||..|.| ++|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 556678999999999999999999999999999999877667899999999999999999999999966 999999998
Q ss_pred ccC
Q 014230 131 ASG 133 (428)
Q Consensus 131 ~~~ 133 (428)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 197
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.5e-16 Score=120.60 Aligned_cols=77 Identities=25% Similarity=0.462 Sum_probs=70.6
Q ss_pred CCCCceeEEEcCCCc-ccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 258 NNPQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
..++.++|||+|||. ++++++|+++|+.|| .|.++++. +|||||+|.+.++|.+|++.|||. .++|++|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G--~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYG--HIMQINIK--NAFGFIQFDNPQSVRDAIEXESQE---MNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGS--CEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTS---EETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEE
Confidence 344568999999998 999999999999999 89999985 799999999999999999999999 8999999999
Q ss_pred eCCCC
Q 014230 337 WGSKP 341 (428)
Q Consensus 337 ~a~~~ 341 (428)
|++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 198
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.9e-17 Score=125.81 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=73.5
Q ss_pred CCCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 257 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
......++|||+|||.++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~---~~~g~~ 98 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT---VVEGRK 98 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTC--CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTC---EETTEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcC--CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCC---EECCEE
Confidence 3445568999999999999999999999999 8999999876 799999999999999999999999 999999
Q ss_pred EEEeeCCCC
Q 014230 333 MKCSWGSKP 341 (428)
Q Consensus 333 l~v~~a~~~ 341 (428)
|+|.|++.+
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998764
No 199
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=8.2e-17 Score=135.01 Aligned_cols=136 Identities=20% Similarity=0.335 Sum_probs=73.6
Q ss_pred EEeCCHHHHHHHHHHhCCceeC--CeeEEEEEccCCCCCCCCcCCcccccchhccCCCCCCCcccCCCCCCCCCCCceeE
Q 014230 188 VSFRNQQDAQSAINDLTGKWLG--SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTV 265 (428)
Q Consensus 188 V~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (428)
.+|.+.++|+.++..+++.... |+.....+........- ... ...........+....+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~----------~~~-----~~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSY----------ERV-----RNEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCc----------ccc-----ccCCCCCCCCCCCCCCCCCEE
Confidence 7899999999999988886553 66555544321110000 000 000000011122334556899
Q ss_pred EEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 266 YVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 266 ~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
||+|||..+++++|+++|+.|| .|..|.+..+ +|||||+|.+.++|.+|+..|||. .|.|++|+|.|++
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYG--EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA---EIMGQTIQVDWCF 150 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEEEESE
T ss_pred EEeCCCCCCCHHHHHHHhhcCC--CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC---EECCEEEEEEEec
Confidence 9999999999999999999999 9999999876 699999999999999999999999 9999999999998
Q ss_pred CCCC
Q 014230 340 KPTP 343 (428)
Q Consensus 340 ~~~~ 343 (428)
...+
T Consensus 151 ~~~~ 154 (165)
T 1rk8_A 151 VKGP 154 (165)
T ss_dssp ECC-
T ss_pred CCCC
Confidence 6544
No 200
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=2e-16 Score=122.33 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=73.0
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccc---
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYL--- 328 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~--- 328 (428)
.....++|||+|||.++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~~ 83 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFG--KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ---KTLPG 83 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHS--CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT---CCCTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC---cccCC
Confidence 344558999999999999999999999999 8999999874 689999999999999999999998 66
Q ss_pred cCeeEEEeeCCCCCC
Q 014230 329 FGKQMKCSWGSKPTP 343 (428)
Q Consensus 329 ~g~~l~v~~a~~~~~ 343 (428)
.|++|+|.|++.+..
T Consensus 84 ~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 84 MNRPIQVKPADSESR 98 (106)
T ss_dssp CSSCCEEEECCCCSC
T ss_pred CCceEEEEECCcccc
Confidence 899999999987544
No 201
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.5e-16 Score=123.87 Aligned_cols=97 Identities=22% Similarity=0.396 Sum_probs=85.7
Q ss_pred ccCceeeeecccccCCccCCCCcceeEecCCCcc-cCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHH
Q 014230 119 LFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 197 (428)
Q Consensus 119 ~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~ 197 (428)
..|..|.+..+............++|||+|||.. +++++|+++|+.||.|.++.+ ++|||||+|.+.++|.
T Consensus 5 ~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 3567788887776666666667789999999999 999999999999999999988 5789999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEccCCCC
Q 014230 198 SAINDLTGKWLGSRQIRCNWATKGAG 223 (428)
Q Consensus 198 ~a~~~l~~~~~~g~~i~v~~~~~~~~ 223 (428)
+|++.|++..+.|+.|+|+++.....
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999875443
No 202
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-16 Score=119.19 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=71.1
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeC
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (428)
..+.++|||+|||.++|+++|+++|++||.+.|.++.+. +|||||+|.+.++|.+|+..||+. .++|++|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGK---VLDGSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSE---EETTEEEEEECC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCC---EeCCcEEEEEEC
Confidence 345589999999999999999999999922289888876 579999999999999999999999 999999999999
Q ss_pred CCCCC
Q 014230 339 SKPTP 343 (428)
Q Consensus 339 ~~~~~ 343 (428)
+.+..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87544
No 203
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-16 Score=118.55 Aligned_cols=78 Identities=23% Similarity=0.243 Sum_probs=71.9
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
.+.++|||+|| ++|+++|+++|++|| .|.+|.+.+.+|||||+|.+.++|.+|++.||+. .+.|++|+|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT---QVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTE---EETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCC--CEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEEECC
Confidence 34589999996 899999999999999 9999999999999999999999999999999999 8999999999998
Q ss_pred CCCCC
Q 014230 340 KPTPP 344 (428)
Q Consensus 340 ~~~~~ 344 (428)
.+...
T Consensus 86 ~~~~~ 90 (97)
T 1x5p_A 86 KQPML 90 (97)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76443
No 204
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=126.61 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=70.1
Q ss_pred CCceeEEEcCCCcccCHHHHH----HHHhccCCeeEEEEEEeC---CccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 260 PQYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~~~i~~i~i~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
++.++|||+|||+.+++++|+ ++|++|| .|.+|.+.+ .+|||||+|.+.++|..|++.|||. .|.|++
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G--~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~---~l~gr~ 101 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQG--DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGY---PFQGNP 101 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTC---CCTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCC--CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCC---EeCCCE
Confidence 345799999999999999876 6999999 899998864 4899999999999999999999999 899999
Q ss_pred EEEeeCCCC
Q 014230 333 MKCSWGSKP 341 (428)
Q Consensus 333 l~v~~a~~~ 341 (428)
|+|.|++.+
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999999865
No 205
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=120.53 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
...+.++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.++.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 3456689999999999999999999999999999999865 58999999999999999999999999999999999977
Q ss_pred cC
Q 014230 132 SG 133 (428)
Q Consensus 132 ~~ 133 (428)
+.
T Consensus 89 ~~ 90 (99)
T 2cpj_A 89 SA 90 (99)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 206
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=121.11 Aligned_cols=83 Identities=28% Similarity=0.570 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeE-EEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGC-KLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i-~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
+++++|||+|||.++|+++|+++|+.||.|.+| ++..++ .+|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 998864 368999999999999999999999999999999999
Q ss_pred ccccCCcc
Q 014230 129 AYASGQRE 136 (428)
Q Consensus 129 ~~~~~~~~ 136 (428)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 97765443
No 207
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3e-17 Score=119.05 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=72.8
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.++ ..+.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999988 9999999999886
No 208
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.4e-16 Score=120.76 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 53 PSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 53 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
..++++|||+|||. ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|+..+|+..+.|+.|+|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 45678899999998 99999999999999999999983 58999999999999999999999999999999999865
Q ss_pred cC
Q 014230 132 SG 133 (428)
Q Consensus 132 ~~ 133 (428)
+.
T Consensus 95 ~~ 96 (97)
T 2xnq_A 95 NA 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 209
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.6e-17 Score=122.26 Aligned_cols=78 Identities=27% Similarity=0.401 Sum_probs=68.6
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCee-EEEEEEeCCccEEEEEeCCHHHHHHHHHHhcC-CCcccccCeeEEEeeC
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGV-IEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT-TQSSYLFGKQMKCSWG 338 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~-i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~~~~g~~l~v~~a 338 (428)
..++|||+|||.++|+++|+++|++|| . |..+.+ .++|||||+|.+.++|.+|++.||+ . .++|++|+|.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~---~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRK--LPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKV---ELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTT--CCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTC---EETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC--CceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCe---eECCEEEEEEEc
Confidence 347899999999999999999999999 6 444444 5689999999999999999999999 8 899999999999
Q ss_pred CCCCCC
Q 014230 339 SKPTPP 344 (428)
Q Consensus 339 ~~~~~~ 344 (428)
+.+...
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 875443
No 210
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=124.33 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=77.0
Q ss_pred CCcceeEecCCCcccCHHHHH---HHhccCCCceEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 014230 139 SGHFNIFVGDLSPEVTDATLF---ACFSVYPSCSDARVMWDQKTG---RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~---~~f~~~g~v~~~~i~~~~~~~---~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 212 (428)
...++|||+|||+++++++|+ ++|+.||.|.++.+..++.++ +++|||||+|.+.++|.+|++.||+..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 445799999999999999999 999999999999999887643 56699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 014230 213 IRCNWATKGA 222 (428)
Q Consensus 213 i~v~~~~~~~ 222 (428)
|+|+++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 211
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.2e-17 Score=125.69 Aligned_cols=77 Identities=26% Similarity=0.428 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
+...++|||+|||.++++++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|+..||+..+.|+.|+|.|+.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3456889999999999999999999999999999998 4568999999999999999999999999999999999864
No 212
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=122.18 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=73.0
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhc-cCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCccc-ccCeeE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSY-LFGKQM 333 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~-~~g~~l 333 (428)
+.++|||+|||.++|+++|+++|+. || .|.+|++.++ +|||||+|.+.++|.+|++.||+. . ++|++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G--~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~~g~~l 82 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYP--SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA---VGLGSKPV 82 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCT--TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC---CSSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCC--CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC---cccCCEeE
Confidence 3478999999999999999999999 99 8999999875 799999999999999999999999 8 999999
Q ss_pred EEeeCCCCCCCC
Q 014230 334 KCSWGSKPTPPG 345 (428)
Q Consensus 334 ~v~~a~~~~~~~ 345 (428)
+|.|++.+....
T Consensus 83 ~v~~a~~~~~~~ 94 (104)
T 2dhg_A 83 RLSVAIPKASRV 94 (104)
T ss_dssp CCCBCCCCCSCC
T ss_pred EEEEccCCCcCC
Confidence 999997665443
No 213
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.1e-16 Score=123.78 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=71.8
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
.....++|||+|||.++|+++|+++|++|| .|.+|.+. +|||||+|.+.++|.+|++.|||. .++|+.|+|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFG--PMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGK---SFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTS--CCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTC---EETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEE
Confidence 344558999999999999999999999999 89999988 899999999999999999999999 89999999999
Q ss_pred CCCCC
Q 014230 338 GSKPT 342 (428)
Q Consensus 338 a~~~~ 342 (428)
++.+.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98654
No 214
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=2.6e-17 Score=123.17 Aligned_cols=78 Identities=27% Similarity=0.349 Sum_probs=64.9
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
.+|||+|||+++|+++|+++|+.||.+.|.++++.++ +|||||+|.+.++|.+|++.|||. .++|+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~---~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR---ELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS---CSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC---eeCCEEEEEE
Confidence 4799999999999999999999999446778887764 689999999999999999999999 8999999999
Q ss_pred eCCCCCC
Q 014230 337 WGSKPTP 343 (428)
Q Consensus 337 ~a~~~~~ 343 (428)
+++++.+
T Consensus 79 ~~~~~~~ 85 (90)
T 3p5t_L 79 PSNKLEH 85 (90)
T ss_dssp CC-----
T ss_pred ECCCCcc
Confidence 9886543
No 215
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=123.67 Aligned_cols=86 Identities=26% Similarity=0.406 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeee
Q 014230 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (428)
Q Consensus 51 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (428)
....+.++|||+|||.++|+++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|++.+++ .|.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 345677899999999999999999999999999999998875 468999999999999999999998 899999999
Q ss_pred ecccccCCccC
Q 014230 127 NWAYASGQRED 137 (428)
Q Consensus 127 ~~~~~~~~~~~ 137 (428)
.++........
T Consensus 91 ~~a~~~~~~~~ 101 (116)
T 2cqd_A 91 NLAYLGAKPRS 101 (116)
T ss_dssp EESTTTCCCCC
T ss_pred EEcccCCCccc
Confidence 99976554433
No 216
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-16 Score=120.14 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCcee--------EEEeecCC----CceEEEEEccHHHHHHHHHHhCCCccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLF 120 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (428)
+.+.++|||+|||.++|+++|+++|+.||.|.+ |++..++. +|||||+|.+.++|.+|++.||+..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456688999999999999999999999999999 99988753 589999999999999999999999999
Q ss_pred Cceeeeecc
Q 014230 121 GQPIKVNWA 129 (428)
Q Consensus 121 g~~l~v~~~ 129 (428)
|+.|+|.++
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999986
No 217
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=124.17 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=78.3
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCC-ceEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeeEE
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVM-WDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQIR 214 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~i~-~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~ 214 (428)
.+.++|||+|||.++++++|+++|+.||. |.++.++ .++.+++++|||||+|.+.++|.+|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45679999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EEEccCCCC
Q 014230 215 CNWATKGAG 223 (428)
Q Consensus 215 v~~~~~~~~ 223 (428)
|.|+.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 218
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=124.61 Aligned_cols=84 Identities=27% Similarity=0.439 Sum_probs=78.7
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
...++|||+|||.++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|++. ++..+.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3457999999999999999999999999999999999988999999999999999999999987 999999999999999
Q ss_pred cCCCC
Q 014230 219 TKGAG 223 (428)
Q Consensus 219 ~~~~~ 223 (428)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 219
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=1.7e-17 Score=124.30 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=74.0
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.+ |.+|+..|++..++|+.|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999998775
Q ss_pred CC
Q 014230 222 AG 223 (428)
Q Consensus 222 ~~ 223 (428)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 220
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.5e-16 Score=123.16 Aligned_cols=78 Identities=24% Similarity=0.487 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
..+.++|||+|||.++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|+..||+..+.|+.|.|.++...
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 4566889999999999999999999999999999998 589999999999999999999999999999999998765
Q ss_pred CC
Q 014230 133 GQ 134 (428)
Q Consensus 133 ~~ 134 (428)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 221
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.7e-16 Score=118.67 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=68.8
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
...++|||+|||.++++++|+++|+.||.+. ..+...+.+|||||+|.+.++|.+|++.|||. .++|++|+|.|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGL---RLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTC---CSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEEcC
Confidence 3457999999999999999999999999432 34444566999999999999999999999999 9999999999998
Q ss_pred CCC
Q 014230 340 KPT 342 (428)
Q Consensus 340 ~~~ 342 (428)
.+.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 222
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=2e-16 Score=123.22 Aligned_cols=79 Identities=22% Similarity=0.417 Sum_probs=72.7
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
..+.++|||+|||.++|+++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|+..|||. .++|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~ 97 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYG--EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA---EIMGQT 97 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC---EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC---EECCcE
Confidence 34558999999999999999999999999 8999999865 699999999999999999999999 999999
Q ss_pred EEEeeCCCCC
Q 014230 333 MKCSWGSKPT 342 (428)
Q Consensus 333 l~v~~a~~~~ 342 (428)
|+|.|++.+.
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999997654
No 223
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=125.22 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=76.9
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCc-eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
...+.++|||+|||.++++++|+++|+.||.| .+|+|++|+ +++++|||||+|.+.++|.+|++. ++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34556899999999999999999999999999 899999997 899999999999999999999986 999999999999
Q ss_pred EEccCC
Q 014230 216 NWATKG 221 (428)
Q Consensus 216 ~~~~~~ 221 (428)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 224
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.9e-16 Score=121.00 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccC-----ceeeee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG-----QPIKVN 127 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~l~v~ 127 (428)
....++|||+|||.++|+++|+++|+.||.|.+|+++.+ |||||+|.+.++|.+|++.||+..|.| +.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 345678999999999999999999999999999999887 899999999999999999999999999 999999
Q ss_pred cccccCCc
Q 014230 128 WAYASGQR 135 (428)
Q Consensus 128 ~~~~~~~~ 135 (428)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99876543
No 225
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=122.36 Aligned_cols=82 Identities=28% Similarity=0.523 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
+...++|||+|||.++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|+..|++..|.|+.|+|.|+.+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 456688999999999999999999999999999999887 589999999999999999999999999999999999876
Q ss_pred CCcc
Q 014230 133 GQRE 136 (428)
Q Consensus 133 ~~~~ 136 (428)
....
T Consensus 100 ~~~~ 103 (109)
T 1x4g_A 100 PDMT 103 (109)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5443
No 226
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=116.67 Aligned_cols=76 Identities=24% Similarity=0.445 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHh-CCCcccCceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~~ 130 (428)
+.+.++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|+..| ++..+.|+.|+|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456688999999999999999999999999999999875 479999999999999999988 9999999999999863
No 227
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=123.09 Aligned_cols=84 Identities=18% Similarity=0.481 Sum_probs=77.5
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--------
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-------- 208 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~-------- 208 (428)
...+.++|||+|||.++++++|+++|+.||.|.++++.+++ ++.++|||||+|.+.++|.+|++.||+..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34556899999999999999999999999999999999997 899999999999999999999999999998
Q ss_pred CCeeEEEEEccCC
Q 014230 209 GSRQIRCNWATKG 221 (428)
Q Consensus 209 ~g~~i~v~~~~~~ 221 (428)
.+++|.|.|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998754
No 228
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=123.21 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=71.5
Q ss_pred CceeEEEcCCCcccCHHHHH---HHHhccCCeeEEEEEEeCCc---------cEEEEEeCCHHHHHHHHHHhcCCCcccc
Q 014230 261 QYTTVYVGNLAPEVTQLDLH---RHFHSLGAGVIEEVRVQRDK---------GFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~---~~F~~~G~~~i~~i~i~~~~---------g~afV~f~~~~~A~~A~~~l~g~~~~~~ 328 (428)
..++|||+|||+++++++|+ ++|++|| .|.+|.+.+++ |||||+|.+.++|.+|++.||+. .|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G--~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~---~~ 88 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFG--KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV---VV 88 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTS--CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE---EE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccC--CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC---EE
Confidence 34789999999999999999 9999999 99999998653 79999999999999999999999 99
Q ss_pred cCeeEEEeeCCCCC
Q 014230 329 FGKQMKCSWGSKPT 342 (428)
Q Consensus 329 ~g~~l~v~~a~~~~ 342 (428)
+|++|+|.|++.+.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998765
No 229
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=125.50 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=76.8
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
..++|||+|||.++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999888999999999999999999999 899999999999999986
Q ss_pred CC
Q 014230 220 KG 221 (428)
Q Consensus 220 ~~ 221 (428)
.+
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 230
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-16 Score=122.71 Aligned_cols=81 Identities=27% Similarity=0.382 Sum_probs=72.4
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEE--------EEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCC
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE--------EVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQ 324 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~--------~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~ 324 (428)
....++|||+|||.++|+++|+++|+.|| .|. .|++..+ +|||||+|.+.++|.+|++.||+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~- 88 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCG--VVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK- 88 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTS--CBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC-
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC-
Confidence 34558999999999999999999999999 777 5777765 789999999999999999999999
Q ss_pred cccccCeeEEEeeCCCCCCC
Q 014230 325 SSYLFGKQMKCSWGSKPTPP 344 (428)
Q Consensus 325 ~~~~~g~~l~v~~a~~~~~~ 344 (428)
.|.|+.|+|.|++.+...
T Consensus 89 --~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 --DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp --EETTEECEEECSSCCCCS
T ss_pred --ccCCCEEEEEECCCCCCC
Confidence 999999999999876543
No 231
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=128.94 Aligned_cols=83 Identities=34% Similarity=0.518 Sum_probs=77.6
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
....+.++|||+|||..+++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEc
Q 014230 216 NWA 218 (428)
Q Consensus 216 ~~~ 218 (428)
+++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 232
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=120.88 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=76.0
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
....++|||+|||+++++++|+++|+.||.|.+ +.|..+ .+++++|||||+|.+.++|.+|+.. ++..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345689999999999999999999999999987 888888 7899999999999999999999996 9999999999999
Q ss_pred EccCCC
Q 014230 217 WATKGA 222 (428)
Q Consensus 217 ~~~~~~ 222 (428)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 886543
No 233
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=121.02 Aligned_cols=78 Identities=23% Similarity=0.430 Sum_probs=71.2
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEE-EEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee-
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE-EVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ- 332 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~-~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~- 332 (428)
..++|||+|||.++++++|+++|++|| .|. +|++.++ +|||||+|.+.++|.+|++.||+. .+.|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~~ 82 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMG--ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK---PLPGATP 82 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTT--CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS---EESSCSS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhC--CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC---ccCCCCc
Confidence 448999999999999999999999999 888 8888866 489999999999999999999999 999999
Q ss_pred ---EEEeeCCCCCC
Q 014230 333 ---MKCSWGSKPTP 343 (428)
Q Consensus 333 ---l~v~~a~~~~~ 343 (428)
|+|.|++...+
T Consensus 83 ~~~l~v~~a~~~~~ 96 (99)
T 2div_A 83 AKRFKLNYATYSGP 96 (99)
T ss_dssp CEECCEEETTCCSS
T ss_pred ceeEEEeecCCCCC
Confidence 99999986543
No 234
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.2e-16 Score=123.53 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=68.1
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEe--CCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
.++|||+|||+++++++|+++|+.||. .|..+.+. +.+|||||+|.+.++|.+|++.|||. .++|+.|+|.+++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~-~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~---~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSL-ETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNI---EFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTC-CCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTE---EETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCC-eeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEECC
Confidence 479999999999999999999999982 46677775 45899999999999999999999999 9999999999987
Q ss_pred CC
Q 014230 340 KP 341 (428)
Q Consensus 340 ~~ 341 (428)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 235
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=2.3e-16 Score=124.21 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=75.3
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCC---ceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
....++|||+|||+++++++|+++|+.||. |.+|+|++++. ++++|||||+|.+.++|++|++ +++..++|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345679999999999999999999999999 89999999976 9999999999999999999999 999999999999
Q ss_pred EEEccC
Q 014230 215 CNWATK 220 (428)
Q Consensus 215 v~~~~~ 220 (428)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998854
No 236
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=121.28 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=74.5
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
....++|||+|||+++++++|+++|+.||.+ +|+|++|+ +++++|||||+|.+.++|++|++ +++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455799999999999999999999999955 99999997 89999999999999999999995 799999999999998
Q ss_pred ccCCC
Q 014230 218 ATKGA 222 (428)
Q Consensus 218 ~~~~~ 222 (428)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 77644
No 237
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=1.5e-16 Score=127.78 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=75.6
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCC---ceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
....++|||+|||+++|+++|+++|+.||. |.+|+|++|+. ++++|||||+|.+.++|++|++ +++..++|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345679999999999999999999999999 89999999976 9999999999999999999999 999999999999
Q ss_pred EEEccC
Q 014230 215 CNWATK 220 (428)
Q Consensus 215 v~~~~~ 220 (428)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998754
No 238
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=120.51 Aligned_cols=82 Identities=26% Similarity=0.405 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC-----CceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~-----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
..+.++|||+|||.++|+++|+++|+.|| |.+|+++.++. +|||||+|.+.++|.+|+ .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 44568899999999999999999999999 99999988753 589999999999999999 999999999999999
Q ss_pred cccccCCcc
Q 014230 128 WAYASGQRE 136 (428)
Q Consensus 128 ~~~~~~~~~ 136 (428)
++.++....
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998765443
No 239
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.8e-16 Score=116.82 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
..+.++|||+|||.++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|.+|+..||+..|.|+.|+|.++.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 456688999999999999999999999999999999744 9999999999999999999999999999999999776
Q ss_pred CCc
Q 014230 133 GQR 135 (428)
Q Consensus 133 ~~~ 135 (428)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 240
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=118.55 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=74.8
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+.++|||+|||.++++++|+++|+.||.| +++.+ .+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999977 56666 678999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 014230 217 WATKGAG 223 (428)
Q Consensus 217 ~~~~~~~ 223 (428)
++..+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987643
No 241
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=5.2e-16 Score=120.80 Aligned_cols=76 Identities=29% Similarity=0.516 Sum_probs=70.3
Q ss_pred CceeEEEcCCCcc-cCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 261 QYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 261 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
..++|||+|||.+ +++++|+++|++|| .|.+|.+ .+|||||+|.+.++|.+|++.||+. .++|+.|+|.|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G--~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYG--RVAGCSV--HKGYAFVQYSNERHARAAVLGENGR---VLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGS--CCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTC---EETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEECC
Confidence 3479999999999 99999999999999 8888888 6899999999999999999999999 9999999999998
Q ss_pred CCCC
Q 014230 340 KPTP 343 (428)
Q Consensus 340 ~~~~ 343 (428)
.+..
T Consensus 99 ~~~~ 102 (110)
T 1wf1_A 99 EPKP 102 (110)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6544
No 242
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.4e-16 Score=118.24 Aligned_cols=85 Identities=29% Similarity=0.513 Sum_probs=76.9
Q ss_pred cCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
....+.++|||+|||.++++++|+++|+.| ..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345667899999999999999999999977 46788888889999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014230 216 NWATKGAG 223 (428)
Q Consensus 216 ~~~~~~~~ 223 (428)
+++.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 243
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=4.3e-16 Score=125.28 Aligned_cols=82 Identities=16% Similarity=0.268 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCcee--EEEeecC----CCceEEEEEccHHHHHHHHHHhCCC----cccCc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGR----HLFGQ 122 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~----~~~g~ 122 (428)
..+.++|||+|||.++|+++|+++|++||.|.. |++++++ ++|||||+|.+. +|.+|+..||+. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456688999999999999999999999999976 9999876 368999999999 999999999999 99999
Q ss_pred eeeeecccccCCc
Q 014230 123 PIKVNWAYASGQR 135 (428)
Q Consensus 123 ~l~v~~~~~~~~~ 135 (428)
.|+|.++.+..+.
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999776544
No 244
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=124.21 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhccCCceeEEEeec-CCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 54 STCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~i~~~~~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
.++++|||+|||..+++++|+ ++|++||.|.+|.+..+ +++|||||+|.+.++|..|+..|||..|.|+.|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 456789999999999999876 69999999999988664 4679999999999999999999999999999999999
Q ss_pred ccccC
Q 014230 129 AYASG 133 (428)
Q Consensus 129 ~~~~~ 133 (428)
+..+.
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 97654
No 245
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=2.5e-16 Score=117.67 Aligned_cols=74 Identities=26% Similarity=0.473 Sum_probs=69.4
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
.++|||+|||.++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|+ .||+. .+.|+.|+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~---~~~g~~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCG--SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES---LFRGRQIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGC--CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC---EETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC---EECCcEEEE
Confidence 37899999999999999999999999 8999999865 789999999999999999 99999 999999999
Q ss_pred eeCCCC
Q 014230 336 SWGSKP 341 (428)
Q Consensus 336 ~~a~~~ 341 (428)
.+++.+
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 999864
No 246
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=9e-17 Score=122.78 Aligned_cols=78 Identities=27% Similarity=0.394 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC-----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~-----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
....++|||+|||.++++++|+++|+.|| |.+|++..++ .+|||||+|.+.++|.+|+ .+++..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45668899999999999999999999999 9999998875 3689999999999999999 899999999999999
Q ss_pred ccccc
Q 014230 128 WAYAS 132 (428)
Q Consensus 128 ~~~~~ 132 (428)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98654
No 247
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=3.1e-16 Score=125.37 Aligned_cols=82 Identities=28% Similarity=0.473 Sum_probs=74.3
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCe
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (428)
.....++|||+|||.++|+++|+++|++|| .|.+|.+..+ +|||||+|.+.++|.+|++.||+. .|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~ 92 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYG--EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ---DLMGQ 92 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC---BSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC---eeCCe
Confidence 344558999999999999999999999999 9999999866 799999999999999999999999 89999
Q ss_pred eEEEeeCCCCCCC
Q 014230 332 QMKCSWGSKPTPP 344 (428)
Q Consensus 332 ~l~v~~a~~~~~~ 344 (428)
.|+|.|++.....
T Consensus 93 ~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 93 PISVDWCFVRGPP 105 (126)
T ss_dssp BCEEEESEESSSC
T ss_pred EEEEEEecCCCCC
Confidence 9999999865443
No 248
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.1e-16 Score=119.91 Aligned_cols=78 Identities=21% Similarity=0.425 Sum_probs=71.0
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCee-EEEEEEe-------CCccEEEEEeCCHHHHHHHHHHhc--CCCcccccC
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGV-IEEVRVQ-------RDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFG 330 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~-i~~i~i~-------~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~~~g 330 (428)
+.++|||+|||.++|+++|+++|+.|| . |.++.+. +.+|||||+|.+.++|.+|++.|+ +. .++|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~---~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVT--EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRI---QLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHS--TTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCS---CBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhc--CCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCc---eecC
Confidence 348999999999999999999999999 7 9999998 458999999999999999999996 57 8999
Q ss_pred eeEEEeeCCCCCC
Q 014230 331 KQMKCSWGSKPTP 343 (428)
Q Consensus 331 ~~l~v~~a~~~~~ 343 (428)
+.|+|.|++....
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 9999999986544
No 249
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=2.6e-16 Score=119.59 Aligned_cols=78 Identities=22% Similarity=0.381 Sum_probs=71.7
Q ss_pred CCceeEEEcCCCcccCHHHHH----HHHhccCCeeEEEEEEeC---CccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 260 PQYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~~~i~~i~i~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
++.++|||+|||.++++++|+ ++|++|| .|.+|.+.+ .+|||||+|.+.++|.+|++.|||. .++|+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G--~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~ 80 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFG--QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF---PFYDKP 80 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGS--CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTC---EETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCC---EECCcE
Confidence 345899999999999999999 9999999 999999884 4899999999999999999999999 899999
Q ss_pred EEEeeCCCCC
Q 014230 333 MKCSWGSKPT 342 (428)
Q Consensus 333 l~v~~a~~~~ 342 (428)
|+|.|++.+.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998653
No 250
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=118.05 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeE-EEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGC-KLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i-~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
...++|||+|||.++|+++|+++|+.||.|.+| .++.++.++.|||+|.+.++|.+|+..||+..|.|+.|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 346789999999999999999999999999999 4888887788999999999999999999999999999999998765
No 251
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-16 Score=116.12 Aligned_cols=78 Identities=27% Similarity=0.528 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
+.+.++|||+|||.++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|.+|+..||+..+.|+.|+|.++.+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 456688999999999999999999999999999999754 9999999999999999999999999999999999776
Q ss_pred CC
Q 014230 133 GQ 134 (428)
Q Consensus 133 ~~ 134 (428)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 252
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.1e-16 Score=119.71 Aligned_cols=77 Identities=26% Similarity=0.502 Sum_probs=70.5
Q ss_pred CCceeEEEcCCCc-ccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeC
Q 014230 260 PQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (428)
Q Consensus 260 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (428)
++.++|||+|||. ++++++|+++|++|| .|.+|.+. +|||||+|.+.++|.+|++.||+. .+.|++|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G--~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYG--HIMQINIK--NAFGFIQFDNPQSVRDAIECESQE---MNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTC--CCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCS---SCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC---eeCCcEEEEEEc
Confidence 4458999999998 999999999999999 89999886 789999999999999999999999 899999999999
Q ss_pred CCCCC
Q 014230 339 SKPTP 343 (428)
Q Consensus 339 ~~~~~ 343 (428)
+....
T Consensus 81 ~~~~~ 85 (96)
T 2kvi_A 81 SSNAR 85 (96)
T ss_dssp ECCCC
T ss_pred CcCCC
Confidence 76544
No 253
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=122.08 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=74.9
Q ss_pred CCCcceeEecCCCccc------CHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014230 138 TSGHFNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~------~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 211 (428)
....++|||+|||..+ ++++|+++|+.||.|.++.+. +.+|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446799999999999 789999999999999999988 36889999999999999999999999999999998
Q ss_pred -eEEEEEccCC
Q 014230 212 -QIRCNWATKG 221 (428)
Q Consensus 212 -~i~v~~~~~~ 221 (428)
.|+|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998654
No 254
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=4.1e-16 Score=120.82 Aligned_cols=76 Identities=24% Similarity=0.279 Sum_probs=70.7
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
..+.++|||+|||.++|+++|+++|++|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .++|+.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 100 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFG--TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV---PLDGRPM 100 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC---EeCCcEE
Confidence 34558999999999999999999999999 8999999855 789999999999999999999999 9999999
Q ss_pred EEeeCC
Q 014230 334 KCSWGS 339 (428)
Q Consensus 334 ~v~~a~ 339 (428)
+|.|++
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999975
No 255
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.6e-15 Score=119.10 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=68.3
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccE-EEEEeCCHHHHHHHHHHhcCCCcccccC--eeEEEeeCC
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGF-GFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGS 339 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a~ 339 (428)
..|||+||++.+|+++|+++|++|| .|.+|.+.+.+|| |||+|.+.++|..|++.|||. .|.| ++|+|.|++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG--~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~---~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVG--KVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGA---DIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTS--CEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTC---CCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EecCCCeEEEEEEec
Confidence 4568999999999999999999999 8999988766796 999999999999999999999 8887 699999998
Q ss_pred CCC
Q 014230 340 KPT 342 (428)
Q Consensus 340 ~~~ 342 (428)
.+.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 256
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=7.2e-16 Score=118.49 Aligned_cols=79 Identities=32% Similarity=0.576 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
..+.++|||+|||.++|+++|+++|+.||.|.+|++.+ +||||+|.+.++|.+|++.||+..|.|+.|+|.++.+.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 34568899999999999999999999999999999874 59999999999999999999999999999999999776
Q ss_pred CCc
Q 014230 133 GQR 135 (428)
Q Consensus 133 ~~~ 135 (428)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 257
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=6.2e-16 Score=118.87 Aligned_cols=81 Identities=17% Similarity=0.350 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
+.+.++|||+|||.++++++|+++|+.|| |.+|+++.++. +|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45568899999999999999999999997 99999998764 589999999999999999 8999999999999999
Q ss_pred ccccCCc
Q 014230 129 AYASGQR 135 (428)
Q Consensus 129 ~~~~~~~ 135 (428)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9776543
No 258
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.6e-16 Score=117.62 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=68.3
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEE--eCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV--QRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
..+.++|||+|||.++|+++|+++|++|| .|.-+.. .+.+|||||+|.+.++|.+|++.||+. .|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g--~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKAT--FIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR---EIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCS--EEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSE---EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCC---EeCCeEEEEE
Confidence 34558999999999999999999999999 6522211 123899999999999999999999999 9999999999
Q ss_pred eCCCCCCC
Q 014230 337 WGSKPTPP 344 (428)
Q Consensus 337 ~a~~~~~~ 344 (428)
|++.+...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99876443
No 259
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=1.3e-15 Score=121.30 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=73.3
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
....++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++|++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l 106 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFG--TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV---PLDGRPM 106 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTS--CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE---ESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC---EECCcEE
Confidence 34558999999999999999999999999 8999999874 799999999999999999999999 9999999
Q ss_pred EEeeCCCCCCC
Q 014230 334 KCSWGSKPTPP 344 (428)
Q Consensus 334 ~v~~a~~~~~~ 344 (428)
+|.|+......
T Consensus 107 ~V~~a~~~~~~ 117 (124)
T 2kt5_A 107 DIQLVASQIDL 117 (124)
T ss_dssp EEEEECCTTCC
T ss_pred EEEEeCCCCCC
Confidence 99998865433
No 260
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=120.57 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=68.0
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
..++|||+|||+++|+++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|+. +++. .++|+.|+|
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G--~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~---~~~gr~l~V 83 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKG--QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQ---KYKETDLLI 83 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSS--CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCC---CCTTTTCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcC--CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCC---EECCEEEEE
Confidence 347899999999999999999999999 9999999874 7999999999999999999 8999 899999999
Q ss_pred eeCC
Q 014230 336 SWGS 339 (428)
Q Consensus 336 ~~a~ 339 (428)
.|++
T Consensus 84 ~~~~ 87 (103)
T 1s79_A 84 LFKD 87 (103)
T ss_dssp EEHH
T ss_pred EEch
Confidence 9865
No 261
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.4e-16 Score=117.99 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 53 PSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 53 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
..+.++|||+|||. ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|+..|++..+.|+.|+|.++..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 45678899999998 99999999999999999999984 57999999999999999999999999999999999976
Q ss_pred cCCc
Q 014230 132 SGQR 135 (428)
Q Consensus 132 ~~~~ 135 (428)
....
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6543
No 262
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=111.13 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=65.2
Q ss_pred eeEEEcCCCcccCHHH----HHHHHhcc-CCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 263 TTVYVGNLAPEVTQLD----LHRHFHSL-GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~----L~~~F~~~-G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
++|||+|||+++++++ |+++|++| | .|.+|. .|+|||.|.+.++|.+|++.|+|. .+.||+|+|+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG--~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~---~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGG--KVLSIT----GCSAILRFINQDSAERAQKRMENE---DVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTC--CEEECC----TTCEEEEESSHHHHHHHHHHHTTC---CSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCC--eeEEEe----cCEEEEEECCHHHHHHHHHHhcCC---ccCCceEEEEe
Confidence 4499999999999988 55899999 6 888882 399999999999999999999999 99999999999
Q ss_pred CCCCCCC
Q 014230 338 GSKPTPP 344 (428)
Q Consensus 338 a~~~~~~ 344 (428)
++.....
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9976554
No 263
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-15 Score=115.93 Aligned_cols=79 Identities=33% Similarity=0.563 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcc--CCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSST--GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (428)
..+.++|||+|||.++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4566899999999999999999999999 899988775 4699999999999999999999999999999999998
Q ss_pred ccCCc
Q 014230 131 ASGQR 135 (428)
Q Consensus 131 ~~~~~ 135 (428)
+....
T Consensus 88 ~~~~~ 92 (99)
T 2cpd_A 88 PVDKD 92 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 264
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=2e-16 Score=120.71 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=69.0
Q ss_pred ceeEEEcCCCc------ccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCccccc
Q 014230 262 YTTVYVGNLAP------EVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (428)
Q Consensus 262 ~~~l~V~nLp~------~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 329 (428)
.++|||+|||. ++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G--~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~---~~~ 80 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG--KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK---RLD 80 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS--CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC---BSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC--CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc---ccC
Confidence 37899999999 999999999999999 9999998754 699999999999999999999999 899
Q ss_pred C-eeEEEeeCCC
Q 014230 330 G-KQMKCSWGSK 340 (428)
Q Consensus 330 g-~~l~v~~a~~ 340 (428)
| +.|+|.|+++
T Consensus 81 g~r~l~V~~a~~ 92 (100)
T 3ns6_A 81 LKHRLFLYTMKD 92 (100)
T ss_dssp SSCBCEEEESHH
T ss_pred CCeEEEEEECch
Confidence 9 9999999863
No 265
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=123.11 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
....++|||+|||.++++++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 4456899999999999999999999999999999998865 3589999999999999999 9999999999999999
Q ss_pred ccccC
Q 014230 129 AYASG 133 (428)
Q Consensus 129 ~~~~~ 133 (428)
+.+..
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 87654
No 266
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=119.71 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCc----eeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPV----EGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v----~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
..+.++|||+|||.++|+++|+++|+.||.| ..+.+...+.+|||||+|.+.++|.+|+..|++..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4466899999999999999999999999998 566666666789999999999999999999999999999999999
Q ss_pred ccccCCcc
Q 014230 129 AYASGQRE 136 (428)
Q Consensus 129 ~~~~~~~~ 136 (428)
+.+.....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98766543
No 267
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=129.39 Aligned_cols=79 Identities=24% Similarity=0.258 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC--CceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
...++|||+|||.++|+++|+++|+.|| .|.+|+++.++. +|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568899999999999999999999999 999999998753 5899999999999999999999999999999999
Q ss_pred ccccc
Q 014230 128 WAYAS 132 (428)
Q Consensus 128 ~~~~~ 132 (428)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 88653
No 268
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=122.73 Aligned_cols=76 Identities=26% Similarity=0.455 Sum_probs=70.5
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
..++|||+|||.++++++|+++|+.|| .|.++.+.++ +|||||+|.+.++|.+|++.|||. .++|+.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 81 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVG--PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR---EFSGRALR 81 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTS--CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB---SCSSSCBE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcC--CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC---eeCCcEEE
Confidence 347899999999999999999999999 8888888765 699999999999999999999999 89999999
Q ss_pred EeeCCCC
Q 014230 335 CSWGSKP 341 (428)
Q Consensus 335 v~~a~~~ 341 (428)
|.|++.+
T Consensus 82 v~~a~~~ 88 (104)
T 1p1t_A 82 VDNAASE 88 (104)
T ss_dssp EEETTCT
T ss_pred EEeCCCc
Confidence 9998865
No 269
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=126.73 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=75.6
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
....++|||+|||+++++++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|.+|++ +++..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999987677777899999999999999999999999 999999999999999
Q ss_pred ccC
Q 014230 218 ATK 220 (428)
Q Consensus 218 ~~~ 220 (428)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 865
No 270
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=8.5e-17 Score=129.57 Aligned_cols=123 Identities=14% Similarity=0.102 Sum_probs=74.0
Q ss_pred ceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccCCccCCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEe
Q 014230 95 SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174 (428)
Q Consensus 95 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~ 174 (428)
++||.+|..++.+..++..... ...|...--... ...........++|||+|||+++++++|+++|+.|| |.+|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~gg~~~g~~~g-~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMAS-MTGGQQMGRGSG-DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CcccccccCccccchhcccchh-ccCCCCCCCCCC-CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 4677777777766655544322 223322211111 111122334567999999999999999999999999 7799999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCCC
Q 014230 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (428)
Q Consensus 175 ~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 222 (428)
+|+. ++++|||||+|.+.++|++|+ .+++..++|+.|+|.++....
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9965 999999999999999999999 689999999999999887654
No 271
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=117.72 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
+.+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.||+..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34668899999999999999999999999999999988743 68999999999999999999999999999999987
Q ss_pred cc
Q 014230 129 AY 130 (428)
Q Consensus 129 ~~ 130 (428)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 272
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.8e-16 Score=118.20 Aligned_cols=83 Identities=20% Similarity=0.401 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
.+.+.++|||+|||.++++++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|+.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 355678999999999999999999999999999999998753 48999999999999999988 9999999999999
Q ss_pred cccccCCc
Q 014230 128 WAYASGQR 135 (428)
Q Consensus 128 ~~~~~~~~ 135 (428)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99876544
No 273
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.5e-16 Score=119.14 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=71.8
Q ss_pred cceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014230 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (428)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 220 (428)
.++|||+|||+++++++|+++|+.| .|.+|+|++|+. ++++|||||+|.+.++|.+|+ .+++..++||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4799999999999999999999999 899999999964 999999999999999999999 5999999999999987753
No 274
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=6.1e-16 Score=114.95 Aligned_cols=77 Identities=21% Similarity=0.361 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
.+.+.++|||+|||.++|+++|+++|++||.|.+|+++.++. +|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 355678999999999999999999999999999999998754 5899999999999999995 58888999999998
Q ss_pred cc
Q 014230 128 WA 129 (428)
Q Consensus 128 ~~ 129 (428)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 275
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=8.2e-17 Score=116.09 Aligned_cols=75 Identities=24% Similarity=0.462 Sum_probs=71.3
Q ss_pred eeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
+|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++ +++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999998 5889999999999874
No 276
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-16 Score=117.79 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
....++|||+|||.++++++|+++|+.||.|.+++++.++. +|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44567899999999999999999999999998887777643 58999999999999999999999999999999999
Q ss_pred cccc
Q 014230 129 AYAS 132 (428)
Q Consensus 129 ~~~~ 132 (428)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 277
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=6.6e-17 Score=123.90 Aligned_cols=83 Identities=29% Similarity=0.466 Sum_probs=76.1
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
....++|||+|||.++++++|+++|+.||.|.. .++.++.+++++|||||+|.+.++|.+|++ |++..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999988 667777789999999999999999999998 999999999999999
Q ss_pred ccCCC
Q 014230 218 ATKGA 222 (428)
Q Consensus 218 ~~~~~ 222 (428)
+..+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 87654
No 278
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=117.05 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=67.2
Q ss_pred ceeEecCCCccc------CHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-eEE
Q 014230 142 FNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-QIR 214 (428)
Q Consensus 142 ~~l~v~~lp~~~------~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i~ 214 (428)
++|||+|||..+ ++++|+++|+.||.|.++.+. +.+++++|||||+|.+.++|.+|++.|||..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999987 36889999999999999999999999999999999 887
Q ss_pred E
Q 014230 215 C 215 (428)
Q Consensus 215 v 215 (428)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 279
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.1e-16 Score=116.94 Aligned_cols=80 Identities=31% Similarity=0.521 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC-ceeEEEeecCCCceEEEEEccHHHHHHHHHHhCC-CcccCceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG-RHLFGQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~~ 130 (428)
+...++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..+.|+.|+|.++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 345678999999999999999999999999 6666653 358999999999999999999999 99999999999997
Q ss_pred ccCCc
Q 014230 131 ASGQR 135 (428)
Q Consensus 131 ~~~~~ 135 (428)
++..+
T Consensus 82 ~~~~~ 86 (93)
T 2cqh_A 82 SKKLR 86 (93)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76543
No 280
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=122.12 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=75.3
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCC---ceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 214 (428)
....++|||+|||+++++++|+++|+.||. |.+|++++++. ++++|||||+|.+.++|.+|++ +++..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 445679999999999999999999999988 89999999976 9999999999999999999999 999999999999
Q ss_pred EEEccC
Q 014230 215 CNWATK 220 (428)
Q Consensus 215 v~~~~~ 220 (428)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998764
No 281
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=118.62 Aligned_cols=77 Identities=21% Similarity=0.448 Sum_probs=70.3
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccc------
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYL------ 328 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~------ 328 (428)
...++|||+|||.++|+++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~~~~~~ 97 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFG--QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK---FIKTPPGV 97 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTS--CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTC---CCCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC---EEcCCccc
Confidence 3457999999999999999999999999 8999999875 789999999999999999999999 78
Q ss_pred --cCeeEEEeeCCCC
Q 014230 329 --FGKQMKCSWGSKP 341 (428)
Q Consensus 329 --~g~~l~v~~a~~~ 341 (428)
.+++|+|+|++++
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999998853
No 282
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2e-15 Score=118.57 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=69.6
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeE----EEEEEe--CCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI----EEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i----~~i~i~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
.+.++|||+|||.++|+++|+++|+.|| .| ..+++. +.+|||||+|.+.++|.+|++.||+. .++|+.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l 97 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQ--EKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY---KLYGKIL 97 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHH--HSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC---BCSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC--CccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC---EeCCcEE
Confidence 3458999999999999999999999999 55 444444 44899999999999999999999999 8999999
Q ss_pred EEeeCCCCCCC
Q 014230 334 KCSWGSKPTPP 344 (428)
Q Consensus 334 ~v~~a~~~~~~ 344 (428)
+|.|++.+...
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 283
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1.2e-15 Score=124.89 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=69.0
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC--ccEEEEEeCCHHHHHHHHHHhcCCCcccccC--eeEEEee
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSW 337 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~ 337 (428)
..+|||+||++.+|+++|+++|++|| .|.+|.+..+ +|||||+|.+.++|.+|++.|||. .|.| ++|+|.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG--~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~---~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ---NIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHS--CEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTB---CSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCC---EecCCCcEEEEEE
Confidence 36789999999999999999999999 8999998643 679999999999999999999999 8865 9999999
Q ss_pred CCCCC
Q 014230 338 GSKPT 342 (428)
Q Consensus 338 a~~~~ 342 (428)
++.+.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98753
No 284
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=3.2e-16 Score=138.16 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=76.6
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCC--CceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
..++|||+||++++++++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 014230 218 ATK 220 (428)
Q Consensus 218 ~~~ 220 (428)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 865
No 285
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3.7e-16 Score=118.76 Aligned_cols=82 Identities=23% Similarity=0.367 Sum_probs=74.7
Q ss_pred CCCcceeEecCCCcccCHHHHH----HHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i 213 (428)
..+.++|||+|||.++++++|+ ++|+.||.|.++.+.. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3456899999999999999999 9999999999998873 56889999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 014230 214 RCNWATKGA 222 (428)
Q Consensus 214 ~v~~~~~~~ 222 (428)
+|.|+..+.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999988754
No 286
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=109.58 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=66.9
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHHhccC-CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 55 TCRS-VYVGNIHTQVTEPL----LQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 55 ~~~~-l~v~nLp~~~t~~~----l~~~f~~~G-~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
++.| |||+|||..+++++ |+++|++|| .|.+|. .|+|||+|.+.++|.+|++.|+|..+.||+|+|.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 4555 99999999999988 558999995 999882 28999999999999999999999999999999999
Q ss_pred ccccCCcc
Q 014230 129 AYASGQRE 136 (428)
Q Consensus 129 ~~~~~~~~ 136 (428)
+..++...
T Consensus 81 A~~~sd~~ 88 (96)
T 2diu_A 81 TPKNRELC 88 (96)
T ss_dssp SCCSCCCC
T ss_pred cCCCccee
Confidence 98776543
No 287
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3e-15 Score=115.06 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=69.7
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (428)
..+.++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++ ++. .++|+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~---~~~g~~ 84 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFG--EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRH---MIDGRW 84 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGS--CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCE---EETTEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcC--CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCC---eeCCeE
Confidence 34457899999999999999999999999 8999998765 6899999999999999999 456 799999
Q ss_pred EEEeeCCCCCCC
Q 014230 333 MKCSWGSKPTPP 344 (428)
Q Consensus 333 l~v~~a~~~~~~ 344 (428)
|+|.|++.+...
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cqg_A 85 CDCKLPNSKQSQ 96 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEEecCCCCcC
Confidence 999999876443
No 288
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.8e-16 Score=119.33 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=71.6
Q ss_pred ceeEecCC----CcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCce
Q 014230 142 FNIFVGDL----SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN----QQD----AQSAIN--DLTGKW 207 (428)
Q Consensus 142 ~~l~v~~l----p~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~----~~~----a~~a~~--~l~~~~ 207 (428)
..|||+|| |+.+++++|+++|+.||+|.++.++.|+.||+++|||||+|.+ .++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 323 788888 789999
Q ss_pred eCCeeEEEEEccC
Q 014230 208 LGSRQIRCNWATK 220 (428)
Q Consensus 208 ~~g~~i~v~~~~~ 220 (428)
|+|+.|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 289
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=8.8e-16 Score=118.33 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=69.1
Q ss_pred ceeEEEcCCCccc------CHHHHHHHHhccCCeeEEEEEEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCe
Q 014230 262 YTTVYVGNLAPEV------TQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (428)
Q Consensus 262 ~~~l~V~nLp~~~------t~~~L~~~F~~~G~~~i~~i~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (428)
.++|||+|||..+ |+++|+++|++|| .|.+|.+.+. +|||||+|.+.++|.+|+..|||. .++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~---~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY---KLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS--CEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSE---ECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC--CEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCc---ccCCC
Confidence 4789999999999 7899999999999 8999999843 799999999999999999999999 99998
Q ss_pred -eEEEeeCCCC
Q 014230 332 -QMKCSWGSKP 341 (428)
Q Consensus 332 -~l~v~~a~~~ 341 (428)
+|+|.|++..
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998753
No 290
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=114.01 Aligned_cols=76 Identities=18% Similarity=0.314 Sum_probs=67.4
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCcc-EEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG-FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
.++|||+|||.++|+++|+++|+.|| .|.+|.+.+..| ||||+|.+.++|.+|++ ||+. .|+|+.|+|.++..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~---~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFG--PVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQH---SLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTS--CEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCC---EETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCe---EECCEEEEEEECCc
Confidence 37899999999999999999999999 888884444433 99999999999999999 9999 99999999999876
Q ss_pred CCC
Q 014230 341 PTP 343 (428)
Q Consensus 341 ~~~ 343 (428)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 291
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=9.4e-16 Score=114.11 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=69.1
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCCC
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (428)
.++|||+|||+++++++|+++|++| .|.++++.+.+|||||+|.+.++|.+|++.|||. .++|++|+|.|++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY---DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQY---SFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS---CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTE---EETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCC---eECCcEEEEEEcCCC
Confidence 3789999999999999999999999 4777777788999999999999999999999999 999999999998764
Q ss_pred C
Q 014230 342 T 342 (428)
Q Consensus 342 ~ 342 (428)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 292
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.5e-15 Score=119.70 Aligned_cols=80 Identities=25% Similarity=0.432 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCce-EEEEEccHHHHHHHHHHhCCCcccC--ceeeeecc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY-GFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (428)
++...+|||+||++.+|+++|+++|++||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 5566778999999999999999999999999999888754 466 9999999999999999999999998 89999999
Q ss_pred cccC
Q 014230 130 YASG 133 (428)
Q Consensus 130 ~~~~ 133 (428)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7664
No 293
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=8.5e-16 Score=119.17 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
.+.+.++|||+|||.++|+++|+++|+.||.|.+|++..++ ++|||||+|.+.++|.+|+..+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 35566889999999999999999999999999999998875 3689999999999999999876 588999999999
Q ss_pred cccccCC
Q 014230 128 WAYASGQ 134 (428)
Q Consensus 128 ~~~~~~~ 134 (428)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9876543
No 294
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=3.9e-15 Score=116.89 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCce-EEEEEccHHHHHHHHHHhCCCcccC--ceeeeecc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY-GFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (428)
++....|||+||++.+|+++|+++|++||.|.+|+++.. +|| |||+|.+.++|..|++.|||..|.| +.|+|.++
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 445556789999999999999999999999999999763 486 9999999999999999999999988 68999999
Q ss_pred cccC
Q 014230 130 YASG 133 (428)
Q Consensus 130 ~~~~ 133 (428)
.+..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7664
No 295
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-15 Score=113.39 Aligned_cols=81 Identities=26% Similarity=0.331 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
.+.+.++|||+|| ++|+++|+++|++||.|.+|++. +.+|||||+|.+.++|.+|+..|++..|.|+.|+|.|+.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 3456689999996 89999999999999999999984 5568999999999999999999999999999999999977
Q ss_pred cCCcc
Q 014230 132 SGQRE 136 (428)
Q Consensus 132 ~~~~~ 136 (428)
+....
T Consensus 87 ~~~~~ 91 (97)
T 1x5p_A 87 QPMLD 91 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65443
No 296
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.6e-15 Score=119.46 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=69.2
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-ccE-EEEEeCCHHHHHHHHHHhcCCCcccccC--eeEEEee
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGF-GFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSW 337 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~ 337 (428)
...|||+||++.+|+++|+++|++|| .|.+|.+.++ +|+ |||+|.+.++|.+|++.|||. .|.| ++|+|.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG--~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~---~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ---NIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSS--CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTC---EEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcC--CEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCC---eecCCCcEEEEEe
Confidence 35688999999999999999999999 8999988754 677 999999999999999999999 8988 9999999
Q ss_pred CCCCC
Q 014230 338 GSKPT 342 (428)
Q Consensus 338 a~~~~ 342 (428)
++...
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98753
No 297
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=118.83 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeeccccc
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (428)
..++|||+|||.++|+++|+++|++||.|.+|.+.+ .+|||||+|.+.++|.+|+..||+..|.|+.|.|.|+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 457899999999999999999999999999998875 4579999999999999999999999999999999998654
No 298
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.62 E-value=1.6e-15 Score=125.95 Aligned_cols=78 Identities=29% Similarity=0.413 Sum_probs=71.7
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (428)
.+.++|||+|||.++|+++|+++|++|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .|+|+.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSG--DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT---RLDDRII 111 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS---EETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC---EECCeEE
Confidence 3458999999999999999999999999 8999999765 589999999999999999999999 9999999
Q ss_pred EEeeCCCCC
Q 014230 334 KCSWGSKPT 342 (428)
Q Consensus 334 ~v~~a~~~~ 342 (428)
+|.|++.+.
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999998643
No 299
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=122.64 Aligned_cols=76 Identities=33% Similarity=0.574 Sum_probs=69.8
Q ss_pred CCCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCe
Q 014230 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (428)
...+.++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~ 133 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES---ELFGR 133 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGS--CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE---EETTE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcC--CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC---EECCE
Confidence 344568999999999999999999999999 9999999765 799999999999999999999999 99999
Q ss_pred eEEEeeC
Q 014230 332 QMKCSWG 338 (428)
Q Consensus 332 ~l~v~~a 338 (428)
+|+|.|+
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999985
No 300
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=8.2e-16 Score=116.58 Aligned_cols=81 Identities=16% Similarity=0.338 Sum_probs=73.2
Q ss_pred CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...+.++|||+|||..+++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34566899999999999999999999999988766 2578999999999999999999999999999999999999
Q ss_pred EccCCC
Q 014230 217 WATKGA 222 (428)
Q Consensus 217 ~~~~~~ 222 (428)
++..+.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 987654
No 301
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=1.6e-16 Score=118.99 Aligned_cols=76 Identities=26% Similarity=0.446 Sum_probs=66.7
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
++|||+|||.++++++|+++|+.|| .|.++.+.++ +|||||+|.+.+ |.+|+..|||. .++|++|+|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~---~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFG--KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT---DFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHT--CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS---CCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcC--CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC---EECCeEEEEE
Confidence 6899999999999999999999999 8999999765 789999999999 99999999999 8999999999
Q ss_pred eCCCCCCC
Q 014230 337 WGSKPTPP 344 (428)
Q Consensus 337 ~a~~~~~~ 344 (428)
|+..+..+
T Consensus 76 ~a~~~~~~ 83 (90)
T 2ki2_A 76 EANPKKSL 83 (90)
T ss_dssp EC------
T ss_pred EcCCCCCC
Confidence 98865443
No 302
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=6.3e-16 Score=116.96 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
.+.++|||+|||.++|+++|+++|++||.|.+++++.++. +|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3457899999999999999999999999999888877643 589999999999999999999999999999999987
Q ss_pred c
Q 014230 130 Y 130 (428)
Q Consensus 130 ~ 130 (428)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 303
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=119.87 Aligned_cols=77 Identities=26% Similarity=0.471 Sum_probs=70.7
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
..++|||+|||.++|+++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++. ++. .|+|+.|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~---~~~g~~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPH---SIDGRVVE 99 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSC--CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSE---EETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCc---EECCEEEE
Confidence 458999999999999999999999999 8999999875 68999999999999999998 998 89999999
Q ss_pred EeeCCCCCC
Q 014230 335 CSWGSKPTP 343 (428)
Q Consensus 335 v~~a~~~~~ 343 (428)
|.|++.+..
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999987644
No 304
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3.1e-17 Score=129.08 Aligned_cols=86 Identities=28% Similarity=0.368 Sum_probs=80.0
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
..+.++|||+|||.++++++|+++|+.||.|.+ +.+..++.+++++|||||+|.+.++|.+|++.|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345689999999999999999999999999998 899999888999999999999999999999999999999
Q ss_pred CeeEEEEEccCCCC
Q 014230 210 SRQIRCNWATKGAG 223 (428)
Q Consensus 210 g~~i~v~~~~~~~~ 223 (428)
|+.|+|+++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999877543
No 305
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-15 Score=113.24 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=69.5
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEE-EeCC--ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR-VQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~-i~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
..++|||+|||+++++++|+++|+.|| .|.+++ +..+ .+.|||+|.+.++|.+|++.|||. .++|++|+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYG--VVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGF---QLENFTLKVAY 88 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHS--CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTC---BCSSCBCEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEE
Confidence 347899999999999999999999999 899994 7765 456999999999999999999999 99999999999
Q ss_pred CCCC
Q 014230 338 GSKP 341 (428)
Q Consensus 338 a~~~ 341 (428)
+++.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9865
No 306
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=2e-15 Score=118.31 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=67.1
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCee-----EEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-----MKC 335 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~-----l~v 335 (428)
..++|||+|||+++++++|+++|++|| .|.+|.+..+ |||||+|.+.++|.+|++.||+. .|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~---~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT---KFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS--CEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTC---BCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCC---EECCcEeeeEEEEe
Confidence 347899999999999999999999999 9999999988 99999999999999999999999 999998 677
Q ss_pred eeCCCC
Q 014230 336 SWGSKP 341 (428)
Q Consensus 336 ~~a~~~ 341 (428)
...+..
T Consensus 89 ~~~~~~ 94 (115)
T 3beg_B 89 KVDGPR 94 (115)
T ss_dssp EECC--
T ss_pred ccCCCC
Confidence 666543
No 307
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=119.79 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCc-eeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPV-EGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v-~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
.+.+.++|||+|||.++|+++|+++|+.||.| .+|+++.++ .+|||||+|.+.++|.+|+.. |+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 35567889999999999999999999999999 889998865 468999999999999999976 9999999999999
Q ss_pred ccccc
Q 014230 128 WAYAS 132 (428)
Q Consensus 128 ~~~~~ 132 (428)
++..+
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 308
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=114.62 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=67.5
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeC---CccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEe
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (428)
.+.++|||+|||.++|+++|+++|+.|+ .+.-+.... .+|||||+|.+.++|.+|++.||+. .|.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~--~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~ 87 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG---EIDGNKVTLD 87 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC---EETTEECEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEE
Confidence 4458899999999999999999999886 444333221 2699999999999999999999999 9999999999
Q ss_pred eCCCCCCC
Q 014230 337 WGSKPTPP 344 (428)
Q Consensus 337 ~a~~~~~~ 344 (428)
|++.+...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99876543
No 309
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=112.39 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
+...++|||+|||.++|+++|+++|+.| .|.+|+++.+.. +|||||+|.+.++|.+|+. +|+..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4566889999999999999999999999 999999988732 5899999999999999999 9999999999999998
Q ss_pred cccC
Q 014230 130 YASG 133 (428)
Q Consensus 130 ~~~~ 133 (428)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 310
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=4.9e-16 Score=119.23 Aligned_cols=82 Identities=24% Similarity=0.453 Sum_probs=75.6
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 218 (428)
...++|||+|||.++++++|+++|+.||.|.++.+..++ +++++|||||+|.+.++|.+|++ ++..+.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345799999999999999999999999999999999997 89999999999999999999998 999999999999998
Q ss_pred cCCCC
Q 014230 219 TKGAG 223 (428)
Q Consensus 219 ~~~~~ 223 (428)
..+..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76543
No 311
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=1e-15 Score=110.25 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 58 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
+|||+|||.++|+++|+++|+.||.|.+|++..++ ++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999998765 36899999999999999997 9999999999999875
No 312
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=3.1e-15 Score=114.51 Aligned_cols=78 Identities=21% Similarity=0.370 Sum_probs=66.8
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCe---eEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAG---VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~---~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
..++|||+|||.++|+++|+++|+.||.+ .+.+....+.+|||||+|.+.++|.+|++ ||+. .+.|+.|+|.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~---~~~g~~l~V~~ 91 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL---KVFGNEIKLEK 91 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC---CBTTBCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc---EECCcEEEEEE
Confidence 45899999999999999999999999921 23333444568999999999999999998 9999 89999999999
Q ss_pred CCCCC
Q 014230 338 GSKPT 342 (428)
Q Consensus 338 a~~~~ 342 (428)
++.+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98653
No 313
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7.8e-16 Score=121.27 Aligned_cols=79 Identities=23% Similarity=0.216 Sum_probs=72.3
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCc----eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSC----SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v----~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
..++|||+|||+++++++|+++|+.||.| .+|.|+.| .+++++|||||+|.+.++|.+|++. ++..++||.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 45799999999999999999999999875 68999988 5899999999999999999999985 999999999999
Q ss_pred EEccC
Q 014230 216 NWATK 220 (428)
Q Consensus 216 ~~~~~ 220 (428)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 314
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=1.6e-15 Score=120.89 Aligned_cols=76 Identities=28% Similarity=0.470 Sum_probs=69.9
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
.++|||+|||.++|+++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|+ .|||. .|+|+.|+|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~---~~~g~~l~V 109 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCG--SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET---VFRGRTIKV 109 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTS--CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC---EETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC---eECCeEEEE
Confidence 47999999999999999999999999 8999998764 789999999999999999 89999 999999999
Q ss_pred eeCCCCCC
Q 014230 336 SWGSKPTP 343 (428)
Q Consensus 336 ~~a~~~~~ 343 (428)
.|++...+
T Consensus 110 ~~a~~~~~ 117 (124)
T 2jwn_A 110 LPKRTNMP 117 (124)
T ss_dssp EESSCCCS
T ss_pred EECCCCCC
Confidence 99986433
No 315
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=6.7e-16 Score=113.00 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=63.8
Q ss_pred eeEEEcCCCccc------CHHHHHHHHhccCCeeEEEEEEeCC----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCe-
Q 014230 263 TTVYVGNLAPEV------TQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK- 331 (428)
Q Consensus 263 ~~l~V~nLp~~~------t~~~L~~~F~~~G~~~i~~i~i~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~- 331 (428)
++|||+|||..+ ++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.|||. .++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~---~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY---KLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTC--CEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSC---CCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC--CeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCc---ccCCce
Confidence 689999999999 7799999999999 8999998853 799999999999999999999999 89999
Q ss_pred eEEEe
Q 014230 332 QMKCS 336 (428)
Q Consensus 332 ~l~v~ 336 (428)
+|+|+
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 88874
No 316
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9e-16 Score=111.19 Aligned_cols=72 Identities=22% Similarity=0.436 Sum_probs=67.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
++|||+|||.++++++|+++|++||.|.+|.+..++. +|||||+|.+.++|.+|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4699999999999999999999999999999988753 6899999999999999999998 9999999999876
No 317
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=116.66 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=68.8
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcc-----cCceee
Q 014230 53 PSTCRSVYV--GNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL-----FGQPIK 125 (428)
Q Consensus 53 ~~~~~~l~v--~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-----~g~~l~ 125 (428)
..++++||| +||+.++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|||..+ .|++|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 345678999 779999999999999999999999988754 58999999999999999999999988 578899
Q ss_pred eeccccc
Q 014230 126 VNWAYAS 132 (428)
Q Consensus 126 v~~~~~~ 132 (428)
|.|+...
T Consensus 100 v~~a~~~ 106 (114)
T 2cq2_A 100 LNFVEKV 106 (114)
T ss_dssp EEEESCC
T ss_pred EEecccC
Confidence 9887543
No 318
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=3.5e-16 Score=150.86 Aligned_cols=76 Identities=17% Similarity=0.388 Sum_probs=71.0
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
+.++|||+|||+.+|+++|+++|+.|| .|..|.|+.+ +|||||+|.+.++|.+|+..|||. .|+|+.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~---~i~gr~i~ 175 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYG--PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK---KIDGRRVL 175 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC--CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC---EECCEEEE
Confidence 447999999999999999999999999 8999999765 799999999999999999999999 99999999
Q ss_pred EeeCCCC
Q 014230 335 CSWGSKP 341 (428)
Q Consensus 335 v~~a~~~ 341 (428)
|.|++..
T Consensus 176 V~~a~~~ 182 (437)
T 3pgw_S 176 VDVERGR 182 (437)
T ss_pred EEEeCCC
Confidence 9998854
No 319
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=3.9e-15 Score=112.82 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=68.6
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEE-EeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR-VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~-i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
..+.++|||+|||.++++++|+++|+.|| .|..+. ..+.+|||||+|.+.++|.+|++.|||. .++|++|+|.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g--~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDAL--EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA---EIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEE--EECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEE---EETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCC--cEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEE
Confidence 34558999999999999999999999999 666661 1123899999999999999999999999 99999999999
Q ss_pred CCCCC
Q 014230 338 GSKPT 342 (428)
Q Consensus 338 a~~~~ 342 (428)
++.+.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97654
No 320
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=2.5e-15 Score=126.91 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=78.2
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 217 (428)
....++|||+|||..+++++|+++|+.||.|.+|.|..++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|+|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccCC
Q 014230 218 ATKG 221 (428)
Q Consensus 218 ~~~~ 221 (428)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8764
No 321
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.6e-15 Score=118.47 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=70.6
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
...++|||+|+ ++|+++|+++|++|| .|.+|.+.+++|||||+|.+.++|.+|++.|||. .++|+.|+|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G--~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~---~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT---QVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTC--CCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTC---BCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccC--CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEEeC
Confidence 34589999996 699999999999999 8999999999999999999999999999999999 8999999999998
Q ss_pred CCC
Q 014230 340 KPT 342 (428)
Q Consensus 340 ~~~ 342 (428)
.+.
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 322
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.7e-15 Score=113.53 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCcee-EEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG-CKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
....++|||+|||+++|+++|+++|+.||.|.+ |+++.+. .+|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 455688999999999999999999999999987 8787653 468999999999999999987 99999999999988
Q ss_pred ccccC
Q 014230 129 AYASG 133 (428)
Q Consensus 129 ~~~~~ 133 (428)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 76543
No 323
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.8e-15 Score=111.30 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCc-eEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g-~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
....++|||+|||.++|+++|+++|+.||.|.+| +.++.++ ||||+|.+.++|.+|+. +++..|.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 3456789999999999999999999999999987 3333322 99999999999999999 999999999999998865
Q ss_pred cCC
Q 014230 132 SGQ 134 (428)
Q Consensus 132 ~~~ 134 (428)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 324
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=3.8e-15 Score=110.81 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=62.7
Q ss_pred CCCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 259 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
.++.++|||+|||+++|+++|+++|++|| .|.+|++.++ ||||||+|.+.++|.+ +++. ...+.|++|.|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G--~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~-~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYG--EVVDVFIPKPFRAFAFVTFADDKVAQS----LCGE-DLIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEECCSSCCSEEEEEESCHHHHHH----HTTC-EEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEeeCCCCEEEEEECCHHHHHH----HcCC-CcccCCEEEEEEE
Confidence 34458999999999999999999999999 9999999976 8999999999999983 4565 1145699999999
Q ss_pred CCCC
Q 014230 338 GSKP 341 (428)
Q Consensus 338 a~~~ 341 (428)
++++
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8754
No 325
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=2.1e-15 Score=118.73 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---ceeEEEeecCC---CceEEEEEccHHHHHHHHHHhCCCcccCceeee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~i~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (428)
....++|||+|||+++|+++|+++|+.||. |.+|+++.++. +|||||+|.+.++|++|++ +|+..|.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456688999999999999999999999998 89999988753 6899999999999999998 9999999999999
Q ss_pred ecccc
Q 014230 127 NWAYA 131 (428)
Q Consensus 127 ~~~~~ 131 (428)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88743
No 326
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=4.6e-15 Score=110.35 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=70.3
Q ss_pred CcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
..++|||+|||+++++++|+++|+.| .|.++++. +++|||||+|.+.++|.+|++.+++..+.|+.|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45799999999999999999999999 99999884 678999999999999999999999999999999999986
Q ss_pred CCC
Q 014230 220 KGA 222 (428)
Q Consensus 220 ~~~ 222 (428)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 327
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=2.3e-15 Score=131.73 Aligned_cols=77 Identities=25% Similarity=0.454 Sum_probs=70.8
Q ss_pred CceeEEEcCCCccc---------CHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccc---
Q 014230 261 QYTTVYVGNLAPEV---------TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL--- 328 (428)
Q Consensus 261 ~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~--- 328 (428)
..++|||+||+.++ ++++|+++|++|| .|.+|++.+++|||||+|.+.++|..|++.|+|. .|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG--~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~---~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG--DIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQ---TLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS--CEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTC---CCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccC--CEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCC---EEecc
Confidence 45899999999998 7999999999999 9999999999999999999999999999999999 78
Q ss_pred ---------cCeeEEEeeCCCCC
Q 014230 329 ---------FGKQMKCSWGSKPT 342 (428)
Q Consensus 329 ---------~g~~l~v~~a~~~~ 342 (428)
.|+.|.|.|++...
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 89999999998653
No 328
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=1.2e-15 Score=120.47 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCce--EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCS--DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~--~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
...++|||+|||+++++++|+++|+.| .|. +|+|++|+. |+++|||||+|.+.++|.+|++ +++..++||.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 455789999999999999999999999 676 899999976 9999999999999999999998 57899999999998
Q ss_pred EccC
Q 014230 217 WATK 220 (428)
Q Consensus 217 ~~~~ 220 (428)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 329
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=113.90 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC---CceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
.+...++|||+|||+++|++||+++|+.||.+ +|+++.++. +|||||+|.+.++|++|+ .+|+..|.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 35566889999999999999999999999955 999988753 589999999999999999 5799999999999998
Q ss_pred ccccC
Q 014230 129 AYASG 133 (428)
Q Consensus 129 ~~~~~ 133 (428)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76554
No 330
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=118.44 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
....++|||+|||.++|+++|+++|+.||.|.++.++.+. .+|||||+|.+.++|.+|+. +|+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4556889999999999999999999999999885554432 35899999999999999998 999999999999998
Q ss_pred ccc
Q 014230 129 AYA 131 (428)
Q Consensus 129 ~~~ 131 (428)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 331
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=5.6e-15 Score=109.71 Aligned_cols=73 Identities=22% Similarity=0.407 Sum_probs=67.2
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhcc----CC-----eeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCe
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSL----GA-----GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G~-----~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (428)
+.++|||+|||+++++++|+++|+.| |. ..|.++.+.+++|||||+|.+.++|.+|+ .||+. .++|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~---~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI---IFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC---EETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC---EECCe
Confidence 34799999999999999999999999 61 16899999999999999999999999999 99999 99999
Q ss_pred eEEEee
Q 014230 332 QMKCSW 337 (428)
Q Consensus 332 ~l~v~~ 337 (428)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 332
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=123.49 Aligned_cols=86 Identities=22% Similarity=0.351 Sum_probs=73.9
Q ss_pred CCCcceeEecCCCcccCHHHHHHHhccCCCceEEE--E---eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 014230 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR--V---MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (428)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~--i---~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 212 (428)
..+.++|||+|||.++++++|+++|+.||.|..+. + ++...+++++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44567999999999999999999999999998741 1 111257899999999999999999999999999999999
Q ss_pred EEEEEccCCCC
Q 014230 213 IRCNWATKGAG 223 (428)
Q Consensus 213 i~v~~~~~~~~ 223 (428)
|+|.++.....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 333
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.57 E-value=3.2e-15 Score=119.99 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCC---ceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceee
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (428)
.+...++|||+|||+++|+++|+++|+.||. |.+|+++.++ ++|||||+|.+.++|++|++ +|+..|.|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456688999999999999999999999999 8999998875 36899999999999999998 999999999999
Q ss_pred eecccc
Q 014230 126 VNWAYA 131 (428)
Q Consensus 126 v~~~~~ 131 (428)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 988743
No 334
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.6e-14 Score=110.56 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=72.2
Q ss_pred CCcceeEecCCCc-----ccCHHHHHHHhccCCCceEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 014230 139 SGHFNIFVGDLSP-----EVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (428)
Q Consensus 139 ~~~~~l~v~~lp~-----~~~~~~l~~~f~~~g~v~~~~i~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 212 (428)
.++++|+|.||.. +-++++|+++|++||.|.++.|.+++.+ ++++||+||+|.+.++|.+|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567899999963 2368999999999999999999988654 689999999999999999999999999999999
Q ss_pred EEEEEccC
Q 014230 213 IRCNWATK 220 (428)
Q Consensus 213 i~v~~~~~ 220 (428)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 335
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=3.7e-15 Score=115.20 Aligned_cols=78 Identities=9% Similarity=-0.002 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---ceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (428)
....++|||+|||+++|+++|+++|+.||. |.+|+++.++ .+|||||+|.+.++|.+|+. +++..+.|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 456688999999999999999999999988 8999998874 46899999999999999998 9999999999999
Q ss_pred ecccc
Q 014230 127 NWAYA 131 (428)
Q Consensus 127 ~~~~~ 131 (428)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 88754
No 336
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=6.6e-15 Score=115.32 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
..++|||+|||.++|+++|+++|+.||.|.+|.++.+ |||||+|.+.++|++|++.||+..|.|+.|++.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 4577999999999999999999999999999999877 899999999999999999999999999984443
No 337
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=3.2e-15 Score=107.66 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=65.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC----CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 58 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
+|||+|||.++|+++|+++|+.||.|.+|.+..++ ++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999998764 36899999999999999997 4889999999999864
No 338
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=7.3e-15 Score=109.25 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=62.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCc--ccCceeeeeccc
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRH--LFGQPIKVNWAY 130 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~l~v~~~~ 130 (428)
+.+..+|||+|||.++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 445578999999999999999999999999999999886 67999999999999983 45555 458999999887
Q ss_pred ccC
Q 014230 131 ASG 133 (428)
Q Consensus 131 ~~~ 133 (428)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 339
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1.3e-14 Score=114.47 Aligned_cols=79 Identities=27% Similarity=0.337 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccc
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (428)
.+.+.++|||+|| ++|+++|+++|+.||.|.+|.+. +.+|||||+|.+.++|.+|+..||+..|.|+.|+|.|+..
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 3556789999996 69999999999999999999986 5568999999999999999999999999999999999976
Q ss_pred cCC
Q 014230 132 SGQ 134 (428)
Q Consensus 132 ~~~ 134 (428)
...
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 340
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.56 E-value=1.2e-14 Score=124.57 Aligned_cols=117 Identities=9% Similarity=0.060 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHh--CCCcccCceeeeecccccCCcc------CCCCcceeEecCCCcccCHHHHHHHhccCCCceEEEEe
Q 014230 103 DRRSAAMAILSL--NGRHLFGQPIKVNWAYASGQRE------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174 (428)
Q Consensus 103 ~~~~A~~a~~~l--~~~~~~g~~l~v~~~~~~~~~~------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~ 174 (428)
+.+.+..|+... ....+.+...+|.......... .....++|||+|||.++++++|+++|+.||.|.+|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 556677777665 3444555555555442211111 12235799999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014230 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (428)
Q Consensus 175 ~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 221 (428)
++. +++++|||||+|.+.++|.+|+..+ +..+.|+.|.|.+....
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 885 5899999999999999999999754 56999999999987654
No 341
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.3e-15 Score=112.63 Aligned_cols=72 Identities=19% Similarity=0.316 Sum_probs=65.1
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEE
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (428)
...+|||+|||+++|+++|+++|+.| .|.+|+|..+ +|||||+|.+.++|.+|+ .+|+. .|+||.|+|
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~---~~~gr~i~V 87 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRM---LMIQRYVEV 87 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTE---EETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCC---eECCeEEEE
Confidence 34789999999999999999999999 4678888754 799999999999999999 68999 999999999
Q ss_pred eeCC
Q 014230 336 SWGS 339 (428)
Q Consensus 336 ~~a~ 339 (428)
..++
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 8865
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=7.7e-15 Score=108.96 Aligned_cols=72 Identities=25% Similarity=0.539 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCc
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 122 (428)
.+.++|||+|||.++|+++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .+|+..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 456889999999999999999999999 8 8999988766 589999999999999999 9999999999
Q ss_pred eeeeec
Q 014230 123 PIKVNW 128 (428)
Q Consensus 123 ~l~v~~ 128 (428)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 343
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=1.5e-14 Score=122.08 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999998864 468999999999999999999999999999999999
Q ss_pred ccccC
Q 014230 129 AYASG 133 (428)
Q Consensus 129 ~~~~~ 133 (428)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 86543
No 344
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.7e-15 Score=109.87 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=64.7
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
.++|||+|||.++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+| ++. ...+.|++|+|.|++.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYG--DVMDVFIPKPFRAFAFVTFADDQIAQSL----CGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTS--CCCEEECCSSCCSCCEEECSCHHHHHHT----TTC-EEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcC--CeeEEEEecCCCCEEEEEECCHHHHHHH----hcC-CceeCCEEEEEEecCC
Confidence 47999999999999999999999999 8999999876 89999999999999754 443 1156899999999886
Q ss_pred CCC
Q 014230 341 PTP 343 (428)
Q Consensus 341 ~~~ 343 (428)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 345
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=118.15 Aligned_cols=78 Identities=29% Similarity=0.380 Sum_probs=67.8
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEE--------EE---EeCCccEEEEEeCCHHHHHHHHHHhcCCCcccc
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE--------VR---VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~--------i~---i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 328 (428)
.+.++|||+|||+++|+++|+++|+.|| .|.. ++ ..+.+|||||+|.+.++|.+|+..|||. .|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~---~~ 117 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYV--DFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY---VL 117 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGC--CTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB---EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC--CcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC---Ee
Confidence 3457999999999999999999999999 4433 43 3355899999999999999999999999 99
Q ss_pred cCeeEEEeeCCCCC
Q 014230 329 FGKQMKCSWGSKPT 342 (428)
Q Consensus 329 ~g~~l~v~~a~~~~ 342 (428)
.|+.|+|.|++...
T Consensus 118 ~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 118 FGKPMVVQFARSAR 131 (143)
T ss_dssp TTEECEEEECCCSC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999997643
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=112.21 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=66.7
Q ss_pred CCcceeEecCCCcccCHHHHHHHhccCCCceEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 014230 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (428)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 215 (428)
...++|||+|||+++++++|+++|+.||.|. +.++.++.+ |+++|||||+|.+.++|.+|++.++ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4567999999999999999999999999999 888888776 7999999999999999999999883 366666666
Q ss_pred EEc
Q 014230 216 NWA 218 (428)
Q Consensus 216 ~~~ 218 (428)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 347
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.1e-15 Score=109.73 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecccccC
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (428)
.+.++|||+|||.++|+++|+++|+.||.|.+|++..+ ++|||||+|.+.++|++++.. ...+.|+.|.|.++.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 35688999999999999999999999999999999876 668999999999999765321 234589999999987765
Q ss_pred Cc
Q 014230 134 QR 135 (428)
Q Consensus 134 ~~ 135 (428)
..
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 348
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=4.5e-15 Score=113.81 Aligned_cols=75 Identities=23% Similarity=0.484 Sum_probs=68.6
Q ss_pred CCceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
...++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++ ++. .++|+.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~---~~~g~~l~ 79 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYG--SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQI---NFHGKKLK 79 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCC---EETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCC---eECCEEEE
Confidence 3458999999999999999999999999 8999999874 6999999999999999999 888 89999999
Q ss_pred EeeCCCC
Q 014230 335 CSWGSKP 341 (428)
Q Consensus 335 v~~a~~~ 341 (428)
|.++..+
T Consensus 80 v~~a~~~ 86 (102)
T 2xs2_A 80 LGPAIRK 86 (102)
T ss_dssp EEEEEEC
T ss_pred EEECCcC
Confidence 9998754
No 349
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=5.5e-16 Score=121.90 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=70.0
Q ss_pred CceeEEEcCCCcccCHHHHHHHHhccCCeeEEE--------EEEeCC------ccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 014230 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE--------VRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSS 326 (428)
Q Consensus 261 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~--------i~i~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~ 326 (428)
+.++|||+|||.++++++|+++|++|| .|.+ |++..+ +|||||+|.+.++|.+|++.||+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--- 80 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIG--IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK--- 80 (116)
Confidence 447899999999999999999999999 7777 777654 689999999999999999999999
Q ss_pred cccCeeEEEeeCCCCC
Q 014230 327 YLFGKQMKCSWGSKPT 342 (428)
Q Consensus 327 ~~~g~~l~v~~a~~~~ 342 (428)
.+.|++|+|.|++.+.
T Consensus 81 ~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRA 96 (116)
Confidence 8999999999988653
No 350
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=7.8e-15 Score=118.08 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
.+...++|||+|||+++|+++|+++|++|| |.+|+++.++ ++|||||+|.+.++|++|+ .+|+..|.|+.|+|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345667899999999999999999999999 6699998874 4689999999999999999 7899999999999988
Q ss_pred ccccC
Q 014230 129 AYASG 133 (428)
Q Consensus 129 ~~~~~ 133 (428)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 76544
No 351
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=2.1e-14 Score=126.52 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--CceeEEEeecCC----CceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~i~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
..++|||+|||.++|+++|+++|+.|| .|.+|+|+.++. +|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999998853 58999999999999999999999999999999998
Q ss_pred cccc
Q 014230 129 AYAS 132 (428)
Q Consensus 129 ~~~~ 132 (428)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8543
No 352
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.51 E-value=2.3e-14 Score=113.04 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCce--eEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE--GCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
+...++|||+|||+++|+++|+++|+.| .|. +|+++.++ .+|||||+|.+.++|.+|++. ++..|.|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 4556789999999999999999999999 566 89988764 469999999999999999974 7799999999998
Q ss_pred cccc
Q 014230 128 WAYA 131 (428)
Q Consensus 128 ~~~~ 131 (428)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7754
No 353
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=113.24 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCc----eeEEEeecC---CCceEEEEEccHHHHHHHHHHhCCCcccCceeee
Q 014230 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPV----EGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (428)
Q Consensus 54 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v----~~i~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (428)
...++|||+|||+++|++||+++|+.||.| .+|.++.++ .+|||||+|.+.++|.+|++. |+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 345789999999999999999999999975 689998764 358999999999999999986 999999999999
Q ss_pred eccc
Q 014230 127 NWAY 130 (428)
Q Consensus 127 ~~~~ 130 (428)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7664
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=1e-13 Score=106.12 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=66.0
Q ss_pred CceeEEEcCCCc-----ccCHHHHHHHHhccCCeeEEEEEEeCC-------ccEEEEEeCCHHHHHHHHHHhcCCCcccc
Q 014230 261 QYTTVYVGNLAP-----EVTQLDLHRHFHSLGAGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (428)
Q Consensus 261 ~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~~~i~~i~i~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 328 (428)
++++|+|.||.. +-++++|+++|++|| .|.+|.+.++ +|+|||+|.+.++|.+|++.|||+ .+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G--~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~---~~ 81 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYG--KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR---YF 81 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGS--CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC---EE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC--CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC---EE
Confidence 347899999963 237899999999999 9999998753 799999999999999999999999 99
Q ss_pred cCeeEEEeeCCC
Q 014230 329 FGKQMKCSWGSK 340 (428)
Q Consensus 329 ~g~~l~v~~a~~ 340 (428)
+||.|+|.|++.
T Consensus 82 ~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 82 GGRVVKACFYNL 93 (105)
T ss_dssp TTEECEEEECCH
T ss_pred CCcEEEEEEcCH
Confidence 999999999763
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.4e-13 Score=105.90 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCccc
Q 014230 52 DPSTCRSVYVGNIHTQVT-----------EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (428)
Q Consensus 52 ~~~~~~~l~v~nLp~~~t-----------~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (428)
.+.++++|+|.||..... +++|+++|++||.|.+|.+.....+|||||+|.+.++|.+|+..|||..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 466788999999954432 689999999999999997744446799999999999999999999999999
Q ss_pred CceeeeecccccCC
Q 014230 121 GQPIKVNWAYASGQ 134 (428)
Q Consensus 121 g~~l~v~~~~~~~~ 134 (428)
|+.|.|.++.+...
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999876543
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.48 E-value=2.4e-13 Score=116.55 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=66.7
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
++|||+|||+++|+++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|+..++ . .++|++|+|.|
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~---~~~Gr~l~V~~ 183 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKG--QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-Q---KYKETDLLILF 183 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSC--CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-C---EETTEECEEEE
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCC--CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-C---eECCEEEEEEE
Confidence 7899999999999999999999999 8999999864 7999999999999999998765 4 69999999999
Q ss_pred CCCC
Q 014230 338 GSKP 341 (428)
Q Consensus 338 a~~~ 341 (428)
++.-
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 8754
No 357
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=1.9e-13 Score=104.67 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=70.4
Q ss_pred CCcceeEecCC--CcccC--------HHHHHHHhccCCCceEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCc
Q 014230 139 SGHFNIFVGDL--SPEVT--------DATLFACFSVYPSCSDARVMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGK 206 (428)
Q Consensus 139 ~~~~~l~v~~l--p~~~~--------~~~l~~~f~~~g~v~~~~i~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~ 206 (428)
.+++.|.|.|+ |.++. +++|++.|++||.|.++.|.+++.+ ++++|++||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678888888 33333 4699999999999999999988654 368999999999999999999999999
Q ss_pred eeCCeeEEEEEccC
Q 014230 207 WLGSRQIRCNWATK 220 (428)
Q Consensus 207 ~~~g~~i~v~~~~~ 220 (428)
.++||.|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=8.1e-14 Score=121.95 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcc----
Q 014230 53 PSTCRSVYVGNIHTQV---------TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL---- 119 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---- 119 (428)
...+++|||+|||..+ ++++|+++|++||.|.+|+++.+ +|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 4567899999999998 79999999999999999999875 48999999999999999999999999
Q ss_pred --------cCceeeeecccccC
Q 014230 120 --------FGQPIKVNWAYASG 133 (428)
Q Consensus 120 --------~g~~l~v~~~~~~~ 133 (428)
.|+.|.|.|+....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 359
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=2e-13 Score=106.50 Aligned_cols=81 Identities=11% Similarity=0.249 Sum_probs=69.8
Q ss_pred CcceeEecCCCc--cc---CHHHHHHHhccCCCceEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014230 140 GHFNIFVGDLSP--EV---TDATLFACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (428)
Q Consensus 140 ~~~~l~v~~lp~--~~---~~~~l~~~f~~~g~v~~~~i~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 210 (428)
++++|+|.|+-. ++ -+++|++.|++||.|.++.|.+++. +++++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456888888832 22 2689999999999999999998864 35788999999999999999999999999999
Q ss_pred eeEEEEEccC
Q 014230 211 RQIRCNWATK 220 (428)
Q Consensus 211 ~~i~v~~~~~ 220 (428)
|.|+|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.45 E-value=8e-14 Score=107.47 Aligned_cols=73 Identities=12% Similarity=0.269 Sum_probs=64.3
Q ss_pred eeEEEcCC----CcccCHHHHHHHHhccCCeeEEEEEEeCC------ccEEEEEeCC----HHH----HHHHHH--HhcC
Q 014230 263 TTVYVGNL----APEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYST----HAE----AALAIQ--MGNT 322 (428)
Q Consensus 263 ~~l~V~nL----p~~~t~~~L~~~F~~~G~~~i~~i~i~~~------~g~afV~f~~----~~~----A~~A~~--~l~g 322 (428)
+.|||+|| |+.+++++|+++|+.|| +|.++.+..| +|||||+|.+ +++ |.+|+. .++|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG--eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG--EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTS--CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 57999999 99999999999999999 8899888876 7999999996 333 888888 7899
Q ss_pred CCcccccCeeEEEeeCCC
Q 014230 323 TQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 323 ~~~~~~~g~~l~v~~a~~ 340 (428)
. .|+|++|+|.+.++
T Consensus 81 ~---~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 81 C---FIMGFKFEVILNKH 95 (136)
T ss_dssp E---EETTEEEEEEECCT
T ss_pred C---eecCcEEEEEECcc
Confidence 9 99999999999765
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=106.53 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=62.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeec-------CCCceEEEEEccHHHHHHHHHHhCCCcccCceee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK-------DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~-------~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (428)
....++|||+|||.++|+++|+++|++||.|. +.++.+ +.+|||||+|.+.++|.+|++.++ .+.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34567899999999999999999999999998 777664 346899999999999999999884 36777776
Q ss_pred eecc
Q 014230 126 VNWA 129 (428)
Q Consensus 126 v~~~ 129 (428)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6544
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=8.9e-13 Score=102.60 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=66.4
Q ss_pred CCceeEEEcCCCccc-----------CHHHHHHHHhccCCeeEEEEEEeC--CccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 014230 260 PQYTTVYVGNLAPEV-----------TQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGNTTQSS 326 (428)
Q Consensus 260 ~~~~~l~V~nLp~~~-----------t~~~L~~~F~~~G~~~i~~i~i~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~ 326 (428)
.+.++|+|.||.... ++++|+++|++|| .|.+|.+.. .+|||||+|.+.++|.+|++.|||.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~--- 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG--QIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGR--- 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS--CCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTC---
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC--CEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCC---
Confidence 345899999994332 2589999999999 888887653 3899999999999999999999999
Q ss_pred cccCeeEEEeeCCCCC
Q 014230 327 YLFGKQMKCSWGSKPT 342 (428)
Q Consensus 327 ~~~g~~l~v~~a~~~~ 342 (428)
.++|++|+|.|++...
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999987643
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=5.4e-13 Score=102.10 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=65.2
Q ss_pred CceeEEEcCC--CcccC--------HHHHHHHHhccCCeeEEEEEEeCC--------ccEEEEEeCCHHHHHHHHHHhcC
Q 014230 261 QYTTVYVGNL--APEVT--------QLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNT 322 (428)
Q Consensus 261 ~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~~~i~~i~i~~~--------~g~afV~f~~~~~A~~A~~~l~g 322 (428)
++++|.|.|+ |.++. +++|++.|++|| .|.+|.|.++ +|+|||+|.+.++|.+|++.|||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G--~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG--LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS--CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC--CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4578999998 44443 378999999999 9999999864 69999999999999999999999
Q ss_pred CCcccccCeeEEEeeCC
Q 014230 323 TQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 323 ~~~~~~~g~~l~v~~a~ 339 (428)
+ .++||.|+|.|..
T Consensus 82 ~---~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 R---KFANRVVVTKYCD 95 (105)
T ss_dssp C---EETTEECEEEEEC
T ss_pred C---EeCCCEEEEEEeC
Confidence 9 9999999999864
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=1.5e-13 Score=105.01 Aligned_cols=72 Identities=22% Similarity=0.426 Sum_probs=63.8
Q ss_pred ecCCCcccCHHHHHHHh------------ccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 014230 146 VGDLSPEVTDATLFACF------------SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (428)
Q Consensus 146 v~~lp~~~~~~~l~~~f------------~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i 213 (428)
+.+|+..+++++|++.| ++||.|.++.|.+++ +++++|||||+|.+.++|.+|+..|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777877776666 999999999999885 47899999999999999999999999999999999
Q ss_pred EEEEc
Q 014230 214 RCNWA 218 (428)
Q Consensus 214 ~v~~~ 218 (428)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=6.3e-13 Score=122.73 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=68.3
Q ss_pred CCCceeEEEcC--CCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCe--eEE
Q 014230 259 NPQYTTVYVGN--LAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK--QMK 334 (428)
Q Consensus 259 ~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~--~l~ 334 (428)
..+.++|||+| |++++|+++|+++|++|| .|.+|.+.++||||||+|.+.++|.+|++.|||.......|+ .|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G--~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTS--CEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 44558999999 578999999999999999 999999999999999999999999999999999932222345 688
Q ss_pred EeeCCC
Q 014230 335 CSWGSK 340 (428)
Q Consensus 335 v~~a~~ 340 (428)
|.|...
T Consensus 93 ~~~~~~ 98 (345)
T 3tht_A 93 LNFVEK 98 (345)
T ss_dssp EEECSS
T ss_pred EEEeec
Confidence 898853
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.7e-12 Score=95.51 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=62.2
Q ss_pred eeEEEcCCC-------cccCHHHHHHHHhccCCeeEEEEEEe-CCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEE
Q 014230 263 TTVYVGNLA-------PEVTQLDLHRHFHSLGAGVIEEVRVQ-RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (428)
Q Consensus 263 ~~l~V~nLp-------~~~t~~~L~~~F~~~G~~~i~~i~i~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (428)
.+|.|.-.. .++++++|+++|++|| .|.+|.+. +.+|||||+|.+.++|..|++.++ .+.+++|+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G--~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~-----~~~g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYG--EVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV-----GLVDNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTS--CEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC-----BCSSSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcC--CEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCeEE
Confidence 456665443 4689999999999999 99999997 458999999999999999999854 46799999
Q ss_pred EeeCCCCCC
Q 014230 335 CSWGSKPTP 343 (428)
Q Consensus 335 v~~a~~~~~ 343 (428)
|.|++.+..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999987643
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.7e-12 Score=101.14 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=64.5
Q ss_pred CceeEEEcCCCc--cc---CHHHHHHHHhccCCeeEEEEEEeCC----------ccEEEEEeCCHHHHHHHHHHhcCCCc
Q 014230 261 QYTTVYVGNLAP--EV---TQLDLHRHFHSLGAGVIEEVRVQRD----------KGFGFVRYSTHAEAALAIQMGNTTQS 325 (428)
Q Consensus 261 ~~~~l~V~nLp~--~~---t~~~L~~~F~~~G~~~i~~i~i~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~ 325 (428)
++++|+|.|+-. ++ .++||++.|++|| .|.+|.|.++ +|++||+|.+.++|.+|++.|||+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G--~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-- 94 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG--AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-- 94 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTS--CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccC--CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC--
Confidence 347899999942 33 3689999999999 9999998865 389999999999999999999999
Q ss_pred ccccCeeEEEeeCC
Q 014230 326 SYLFGKQMKCSWGS 339 (428)
Q Consensus 326 ~~~~g~~l~v~~a~ 339 (428)
+++||.|+|.|..
T Consensus 95 -~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 95 -WFAGRKVVAEVYD 107 (118)
T ss_dssp -EETTEECEEEEEC
T ss_pred -EECCcEEEEEEcC
Confidence 9999999999864
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.34 E-value=4.1e-12 Score=98.31 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCCCCC----------HHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCc
Q 014230 53 PSTCRSVYVGNIHTQVT----------EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t----------~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 122 (428)
+.+++.|.|.|+-.... ++||++.|++||.|.+|.+.++..+|++||+|.+.++|.+|++.|||..|.|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45677899999843221 46889999999999999998877789999999999999999999999999999
Q ss_pred eeeeecccc
Q 014230 123 PIKVNWAYA 131 (428)
Q Consensus 123 ~l~v~~~~~ 131 (428)
.|.|.|+..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999998743
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.9e-11 Score=91.13 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=63.6
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeec
Q 014230 56 CRSVYVGNIH-------TQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (428)
Q Consensus 56 ~~~l~v~nLp-------~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (428)
..+|.|.-.. .++++++|+++|++||.|.+|.++ .+.+|||||+|.+.++|..|++.++ .+.|++|+|.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~ 86 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISW 86 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEEC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEE
Confidence 4457776654 458999999999999999999987 4567999999999999999998744 46899999999
Q ss_pred ccccCC
Q 014230 129 AYASGQ 134 (428)
Q Consensus 129 ~~~~~~ 134 (428)
+.....
T Consensus 87 a~~~~~ 92 (100)
T 2d9o_A 87 LEGQPQ 92 (100)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 876654
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.31 E-value=1.1e-12 Score=100.16 Aligned_cols=67 Identities=19% Similarity=0.414 Sum_probs=59.3
Q ss_pred EcCCCcccCHHHHHHHH------------hccCCeeEEEEEEeCC-----ccEEEEEeCCHHHHHHHHHHhcCCCccccc
Q 014230 267 VGNLAPEVTQLDLHRHF------------HSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (428)
Q Consensus 267 V~nLp~~~t~~~L~~~F------------~~~G~~~i~~i~i~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 329 (428)
+.+|+..+++++|++.| ++|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||+ .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G--~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~---~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG--EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR---WFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC---EET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC---EEC
Confidence 56777777887776666 9999 9999999875 799999999999999999999999 999
Q ss_pred CeeEEEeeC
Q 014230 330 GKQMKCSWG 338 (428)
Q Consensus 330 g~~l~v~~a 338 (428)
||+|+|.|+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999986
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=7.9e-12 Score=96.69 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=64.4
Q ss_pred CceeEEEcCCCccc----------CHHHHHHHHhccCCeeEEEEEEeCC--ccEEEEEeCCHHHHHHHHHHhcCCCcccc
Q 014230 261 QYTTVYVGNLAPEV----------TQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (428)
Q Consensus 261 ~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~~~i~~i~i~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 328 (428)
++++|.|.|+=..- .++||++.|++|| .|.+|.+.++ +|++||+|.+.++|.+|++.|||+ ++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG--~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~---~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG--GVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR---WF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT--CCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC---EE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC--CEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC---EE
Confidence 34789999883321 2468899999999 8999999887 799999999999999999999999 99
Q ss_pred cCeeEEEeeCC
Q 014230 329 FGKQMKCSWGS 339 (428)
Q Consensus 329 ~g~~l~v~~a~ 339 (428)
+||.|+|.|..
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999975
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=1.1e-11 Score=114.42 Aligned_cols=76 Identities=24% Similarity=0.394 Sum_probs=65.7
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCccc---Cc--eee
Q 014230 53 PSTCRSVYVGN--IHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF---GQ--PIK 125 (428)
Q Consensus 53 ~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~--~l~ 125 (428)
..++++|||+| |+..+||++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|||..+. |+ .+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 45678899999 578999999999999999999988755 5689999999999999999999999873 44 577
Q ss_pred eeccc
Q 014230 126 VNWAY 130 (428)
Q Consensus 126 v~~~~ 130 (428)
+.|..
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 77763
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=9.5e-11 Score=84.54 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=62.8
Q ss_pred CCCceeEEEcCCCc----ccCH----HHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccC
Q 014230 259 NPQYTTVYVGNLAP----EVTQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (428)
Q Consensus 259 ~~~~~~l~V~nLp~----~~t~----~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 330 (428)
.|+.-||+|...+. +.-+ .+|.+.|+.|| .|..+++..++ +||+|.+.++|.+|++ |||. .++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~---~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG--EVILIRFVEDK--MWVTFLEGSSALNVLS-LNGK---ELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC--CEEEEEECSSS--EEEEESSHHHHHHGGG-GTTC---EETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC--CeEEEEEecCC--EEEEECChHHHHHHHh-cCCe---EeCC
Confidence 34456888877662 3333 67899999999 99999999986 8999999999999998 9999 9999
Q ss_pred eeEEEeeCCC
Q 014230 331 KQMKCSWGSK 340 (428)
Q Consensus 331 ~~l~v~~a~~ 340 (428)
|.|+|.++++
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999874
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.8e-10 Score=88.94 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=67.8
Q ss_pred CCCCceeEEEcCCCcc-cCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCC-HHHHHHHHHHhc--CCCcccccCeeE
Q 014230 258 NNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYST-HAEAALAIQMGN--TTQSSYLFGKQM 333 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~-~~~A~~A~~~l~--g~~~~~~~g~~l 333 (428)
..+.++.|+|+||+.+ +++++|+++|+.|| .|.+|.+.++...|||+|.+ .++|..|+..++ +. .|.|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G--~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~---~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHG--EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNL---QLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSC--CEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCB---CTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcC--CEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCc---EEeCcEE
Confidence 4456689999999999 99999999999999 99999999999999999999 899999999995 55 7899888
Q ss_pred EEee
Q 014230 334 KCSW 337 (428)
Q Consensus 334 ~v~~ 337 (428)
++..
T Consensus 89 ~~ev 92 (121)
T 1owx_A 89 TWEV 92 (121)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8865
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=6.6e-10 Score=80.13 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=61.6
Q ss_pred CCcceeEecCCCc----ccCH----HHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014230 139 SGHFNIFVGDLSP----EVTD----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (428)
Q Consensus 139 ~~~~~l~v~~lp~----~~~~----~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 210 (428)
++..+|+|.-.+. ++-. .+|.+.|+.||.|..+++..|+ +||+|.+.++|.+|++ |+|..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 3445777766552 2333 6789999999999999999764 9999999999999998 99999999
Q ss_pred eeEEEEEccCC
Q 014230 211 RQIRCNWATKG 221 (428)
Q Consensus 211 ~~i~v~~~~~~ 221 (428)
|.|+|+++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998764
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=4.3e-10 Score=81.44 Aligned_cols=74 Identities=23% Similarity=0.260 Sum_probs=63.0
Q ss_pred CCCCceeEEEcCCCcc-----cCH----HHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccc
Q 014230 258 NNPQYTTVYVGNLAPE-----VTQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (428)
Q Consensus 258 ~~~~~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 328 (428)
..|+.-||+|..++.+ +-+ .+|.+.|+.|| .|..+++..++ +||+|.+.++|.+|++ |||. .+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~---~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG--TIVLVRINQGQ--MLVTFADSHSALSVLD-VDGM---KV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS--CCSEEEEETTE--EEEECSCSHHHHHHHH-GGGS---EE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC--CEEEEEEecCc--EEEEEcChHHHHHHHh-cCCe---ee
Confidence 4455578999888632 323 56889999999 89999999987 9999999999999998 9999 99
Q ss_pred cCeeEEEeeCC
Q 014230 329 FGKQMKCSWGS 339 (428)
Q Consensus 329 ~g~~l~v~~a~ 339 (428)
+||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999854
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1e-09 Score=84.79 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhccCCceeEEEeecCCCceEEEEEcc-HHHHHHHHHHhC--CCcccCceeeeec
Q 014230 53 PSTCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFD-RRSAAMAILSLN--GRHLFGQPIKVNW 128 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~-~~~A~~a~~~l~--~~~~~g~~l~v~~ 128 (428)
-.+.+.|+|+||+.+ +++++|+++|+.||.|..|.+..+.. .|||+|.+ .++|..|+..+| +..|.|..+.+..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 345678999999999 99999999999999999999988876 69999999 799999999984 6778888777764
Q ss_pred c
Q 014230 129 A 129 (428)
Q Consensus 129 ~ 129 (428)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=2.7e-09 Score=77.29 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=61.4
Q ss_pred CCcceeEecCCCcc-----cCH----HHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 014230 139 SGHFNIFVGDLSPE-----VTD----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (428)
Q Consensus 139 ~~~~~l~v~~lp~~-----~~~----~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 209 (428)
++.-+|+|.-++.+ +-. .+|.+.|..||.|..+++..|+ +||+|.+.++|.+|++ |+|..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45568888877632 323 5788999999999999999774 9999999999999998 9999999
Q ss_pred CeeEEEEEccC
Q 014230 210 SRQIRCNWATK 220 (428)
Q Consensus 210 g~~i~v~~~~~ 220 (428)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999987543
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=1.2e-08 Score=89.55 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=60.0
Q ss_pred CHHHHHHHhccCCCceEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014230 154 TDATLFACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (428)
Q Consensus 154 ~~~~l~~~f~~~g~v~~~~i~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 219 (428)
.+++|++.|++||.|.++.|.++.. +++++|++||+|.+.++|.+|++.|+|+.+.||.|.+.|..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4679999999999999999986644 34899999999999999999999999999999999999875
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.72 E-value=4.9e-08 Score=71.94 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=67.1
Q ss_pred eeEEEcCCCcccCHHHHHHHHhcc-----CCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~-----G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
++|-+-|||..+++..|+.+++++ | .+..|.+..+.+-|+|+|.|...|.+|.-.|+|. +|.||+|+|.-
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g--~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~---ef~gr~Lr~gT 96 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEK--DIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGS---QFQGKVIRSGT 96 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTT--TCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSE---EETTEEEEEEC
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCcc--ceeEEEEecCCCceEEEEccchhhHHHHhhcCCe---eecCeEEEecC
Confidence 689999999999999999999999 9 9999999999999999999999999999999999 99999999963
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.65 E-value=4.7e-08 Score=85.68 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=55.5
Q ss_pred cCHHHHHHHHhccCCeeEEEEEEe----------CCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 274 VTQLDLHRHFHSLGAGVIEEVRVQ----------RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 274 ~t~~~L~~~F~~~G~~~i~~i~i~----------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
-.+++|++.|++|| .|.++.+. +.+|++||+|.+.++|.+|++.|||+ +++||.|++.|..
T Consensus 141 e~~~dl~~e~~~~G--~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr---~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFG--AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR---WFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTS--CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC---BSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccC--CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc---eECCeEEEEEEcC
Confidence 35688999999999 99999997 34799999999999999999999999 9999999999864
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.48 E-value=6.4e-07 Score=66.06 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-----CCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSST-----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
..++|-+-|||..+++.-|+.+.+++ |.+.+|.+..|-. -|+|+|.|...|-+|...|+|..|.|++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 35789999999999999999999999 9999999988864 59999999999999999999999999999985
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.34 E-value=2.3e-06 Score=63.05 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=64.7
Q ss_pred eeEEEcCCCccc-CH----HHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEee
Q 014230 263 TTVYVGNLAPEV-TQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (428)
Q Consensus 263 ~~l~V~nLp~~~-t~----~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (428)
++|+|.||+.++ .. +.++++|..|+ .+......++=.-..|.|.+.++|.+|...||+. .+.|++++|-|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~--~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~---~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYD--KDTTFQYFKSFKRVRINFSNPLSAADARLRLHKT---EFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTC--SSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTS---EETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhC--cCcceeecCcceEEEEEeCChHHHHHHHHHhccc---eecCceeEEEe
Confidence 689999999876 32 56789999999 7888888888667799999999999999999999 99999999999
Q ss_pred CCC
Q 014230 338 GSK 340 (428)
Q Consensus 338 a~~ 340 (428)
+..
T Consensus 81 gq~ 83 (104)
T 1wey_A 81 AQT 83 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 983
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=7.1e-06 Score=60.12 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcc-----CCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeee
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSST-----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (428)
.+..++|.|.|||.++.++.|.-+|+.- |+|.+|+... +-|+|+|.+.+.|++.++. ..+.|.|.+|.|.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 3455789999999999999999999972 4888888765 3699999999999999852 3678999999997
Q ss_pred cccccCCccCCCCcceeEecCCCcccC
Q 014230 128 WAYASGQREDTSGHFNIFVGDLSPEVT 154 (428)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~~lp~~~~ 154 (428)
...+. ...+|++.+|++.++
T Consensus 80 P~~~~-------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPPR-------APARLLLQGLPPGTS 99 (104)
T ss_dssp ECCCC-------CCCCCCCCSCCCCCC
T ss_pred cCCCC-------CcceEeeecCCCCCC
Confidence 54333 235899999998765
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.6e-05 Score=57.14 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=62.1
Q ss_pred eeEEEcCCCcccCHHHHHHHHhc---cCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHS---LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~---~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
++|.|.|||++++++.|.-+|++ -|.+.|.++.... +-|+|+|.+.+.|.+.++.-. + .|.+..|.|.-..
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~-H---~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQAD-H---ELHGAQLSLRPAP 82 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSC-C---BSSSSBCEEEECC
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCc-c---eecCeEEEEEcCC
Confidence 78999999999999999999998 4778999999988 789999999999999988533 3 6999999997543
Q ss_pred C
Q 014230 340 K 340 (428)
Q Consensus 340 ~ 340 (428)
.
T Consensus 83 ~ 83 (104)
T 2dhx_A 83 P 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=0.00026 Score=52.20 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=61.8
Q ss_pred ceeEecCCCccc-CH----HHHHHHhccCCCceEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 014230 142 FNIFVGDLSPEV-TD----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (428)
Q Consensus 142 ~~l~v~~lp~~~-~~----~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 216 (428)
++|+|.||+.++ .. +.++++|..|+++.....++. -.-..|.|.+.++|.+|...|++..+.|+.++|-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 589999998875 32 467889999999988877733 2248899999999999999999999999999999
Q ss_pred EccC
Q 014230 217 WATK 220 (428)
Q Consensus 217 ~~~~ 220 (428)
|+.+
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9874
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.66 E-value=0.00021 Score=51.68 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=47.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhC
Q 014230 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (428)
Q Consensus 53 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 115 (428)
+.....++| ++|..+...||.++|+.||.| .|+-+.|. .|||.|.+++.|..|+..++
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 334444666 999999999999999999966 66777775 59999999999999998653
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.65 E-value=0.00017 Score=52.34 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=55.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCC------CceEEEEEccHHHHHHHHHHhCCCcccC
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK------SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~------~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (428)
++|.|++||+.+||+++.+.+..+..+.....+..+. ..-|+|.|.+.+++....+.++|..|..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4699999999999999999999988776666666542 2579999999999999999999988753
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.39 E-value=0.00081 Score=48.62 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=45.9
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhc
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~ 321 (428)
..++| ++|.++...||.++|+.||.+.|.-|. .-.|||.|.+++.|..|++.++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE----TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 45556 999999999999999999866666655 3679999999999999999774
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.32 E-value=0.00052 Score=49.72 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=51.5
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC--------ccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
++|.|++||+++|++++.+.++.+. .+....+... -.-|+|.|.+.++...-.+.++|+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 4799999999999999999999997 6666666543 257999999999999999999998
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.23 E-value=0.00039 Score=50.45 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=45.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhC
Q 014230 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (428)
Q Consensus 59 l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 115 (428)
|++-++|..+...||.++|+.||.| .|+-+.|. .|||.|.+++.|..|+..++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 4444999999999999999999955 66667765 59999999999999998765
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.12 E-value=0.0023 Score=48.51 Aligned_cols=71 Identities=14% Similarity=0.053 Sum_probs=59.1
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccC-eeEEEeeCC
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-KQMKCSWGS 339 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g-~~l~v~~a~ 339 (428)
.+.|.|.+.|... ...|...|++|| .|.+........+..|.|.++.+|.+|+.+ ||. .+++ --|-|....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G--~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~---ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYG--NILKHVMSNTGNWMHIRYQSKLQARKALSK-DGR---IFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTS--CEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTC---EETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhC--cEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCe---EecCCEEEEEEECC
Confidence 4789999999985 677889999999 899988876788999999999999999985 888 7764 556666643
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.97 E-value=0.00066 Score=49.44 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=49.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecC------CCceEEEEEccHHHHHHHHHHhCCCcccC
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~------~~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (428)
+.+|.|+.||+.+||+++.+.+..+-.+.....+..+ ...-|+|.|.+.++.....+.++|..|..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4569999999999999998888765443322222222 12469999999999999999999988753
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.93 E-value=0.003 Score=47.91 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=55.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccC-ceeeeecc
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG-QPIKVNWA 129 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~~ 129 (428)
.+-|.|-+.|... ...|...|++||.|.+... .....+..|.|.+..+|++||. .||..|.| -.|-|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 4569999999885 6778889999999998776 3344699999999999999995 58988874 44555543
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.88 E-value=0.0012 Score=47.95 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=44.4
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhc
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~ 321 (428)
..++| ++|.++.-.||.++|+.||.+.|.-|. | -.|||.|.+++.|..|++.+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid---D-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---D-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE---T-TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc---C-CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999844444433 3 679999999999999999774
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.13 E-value=0.0033 Score=60.01 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=42.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHH
Q 014230 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112 (428)
Q Consensus 56 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~ 112 (428)
.|+|+|. .|..+++.+|.++|+.||+|.++.+..++. -||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHh
Confidence 4789997 799999999999999999999988876554 599999999999987753
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.08 E-value=0.0037 Score=45.51 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=47.7
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC--------ccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
-+|.|+.||+.+||+++.+.++.+- .+....+... -.-|+|.|.+.++...-.+.++|.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLP--AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCS--SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcC--ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 4699999999999999998888764 4444333332 256999999999999999999998
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.88 E-value=0.0039 Score=59.51 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=42.2
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCcc-EEEEEeCCHHHHHHHHH
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG-FGFVRYSTHAEAALAIQ 318 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g-~afV~f~~~~~A~~A~~ 318 (428)
++|+|. .|..+++.+|.++|++|| .|.++.+.+++| ||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g--~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFG--PINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGS--CCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcC--CcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 689997 799999999999999999 999999999977 89999999998886654
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.69 E-value=0.01 Score=45.61 Aligned_cols=71 Identities=21% Similarity=0.198 Sum_probs=52.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCcee-EEEee------------c-----CCCceEEEEEccHHHHHHHHHHhCCCc
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEG-CKLIR------------K-----DKSSYGFIHYFDRRSAAMAILSLNGRH 118 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-i~~~~------------~-----~~~g~afV~f~~~~~A~~a~~~l~~~~ 118 (428)
..|.|-+.|.+. ...|.+.|++||.|.+ +...+ . ....+..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 348888887765 5667788999999876 21111 0 023588999999999999995 69999
Q ss_pred ccCceeeeecc
Q 014230 119 LFGQPIKVNWA 129 (428)
Q Consensus 119 ~~g~~l~v~~~ 129 (428)
|.|..|-|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99876666654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.23 E-value=0.039 Score=42.41 Aligned_cols=76 Identities=13% Similarity=0.157 Sum_probs=55.2
Q ss_pred ceeEecCCCcccCHHHHHHHhccCCCceE-EEEeecC--------CCC-----CcccEEEEEeCCHHHHHHHHHHhCCce
Q 014230 142 FNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQ--------KTG-----RSRGFGFVSFRNQQDAQSAINDLTGKW 207 (428)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~i~~~~--------~~~-----~~~g~afV~f~~~~~a~~a~~~l~~~~ 207 (428)
.-|.|-+.|++. ...+.+.|++||.|.+ +.+.++. ... ...+...|+|.+..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 467888898875 5567788999999866 2222100 000 134578999999999999997 69999
Q ss_pred eCCeeEEEEEcc
Q 014230 208 LGSRQIRCNWAT 219 (428)
Q Consensus 208 ~~g~~i~v~~~~ 219 (428)
+.|.-|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.55 E-value=1.3 Score=43.00 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=44.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHhCC
Q 014230 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG 116 (428)
Q Consensus 57 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 116 (428)
..++|+ +|..+...+|.+.|+.||.| +|+.+.+. .|||.|.+.++|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 445555 99999999999999999965 55555553 699999999999999988754
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.31 E-value=2.2 Score=41.39 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=45.3
Q ss_pred ceeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 262 ~~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
...++|+ +|..+...+|.+.|+.||.+ +|+.. +...|||.|.+.+.|..+++.++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v---~V~wi-ddt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI---QISWI-DDTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC---EEEEC-SSSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE---EEEEE-cCCeEEEEECCHHHHHHHHHHHHhC
Confidence 3566665 99999999999999999833 34433 3467999999999999999988643
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.26 E-value=11 Score=25.65 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=44.8
Q ss_pred eEEEcC-CCcccCHHHHHHHHhccC---CeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCC
Q 014230 264 TVYVGN-LAPEVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (428)
Q Consensus 264 ~l~V~n-Lp~~~t~~~L~~~F~~~G---~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (428)
+|+|.. --..++..+|..++..-+ ...|-.|.+..+ |.||+-.. +.|..+++.|++. .+.|+.++|..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~~-~~~~~~~~~l~~~---~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEILN-GKGPHVLKVMKNT---TVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEECT-TCHHHHHHHHTTC---CC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEECH-HHHHHHHHHhccc---cCcCceEEEEECC
Confidence 455521 123567788888777544 346777888765 88888855 5677888999998 8999999998764
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=56.55 E-value=48 Score=23.13 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=44.9
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcC
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT 322 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g 322 (428)
+-|.|-|+|..+-..++.-.....| .--.|... .|.|.|.|.+.++-..|+..|-+
T Consensus 13 clikiinipqgtlkaevvlavrhlg--yefycdyi--dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLG--YEFYCDYI--DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTC--CCEEEEEC--SSCEEEEESSHHHHHHHHHHHEE
T ss_pred cEEEEEecCCCceeeeeEEeehhcC--eeEeeeee--cCeeEEEecCChHHHHHHHHHHh
Confidence 6688999999999888887777777 44455554 37899999999999999987643
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=50.64 E-value=53 Score=21.96 Aligned_cols=58 Identities=9% Similarity=0.200 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHhccCC-----ceeEEEeecCCCceEEEEEccHHHHHHHHHHhCCCcccCceeeeecc
Q 014230 67 QVTEPLLQEVFSSTGP-----VEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (428)
Q Consensus 67 ~~t~~~l~~~f~~~G~-----v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (428)
.+...+|..++..-+. |-.|.+.. .|.||+-.... +..++..|++..+.|+.+.++.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 3556777777765443 34455533 37899887765 78899999999999999988754
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.95 E-value=31 Score=27.78 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=33.0
Q ss_pred eEEEcCCCcc---------cCHHHHHHHH--hccCCeeEEEEEEeCC-ccEEEEEeCCHH
Q 014230 264 TVYVGNLAPE---------VTQLDLHRHF--HSLGAGVIEEVRVQRD-KGFGFVRYSTHA 311 (428)
Q Consensus 264 ~l~V~nLp~~---------~t~~~L~~~F--~~~G~~~i~~i~i~~~-~g~afV~f~~~~ 311 (428)
++.|-|+|.. .+..+|++.| +.|.+..+..+.-... +|++.|.|.+.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCCh
Confidence 4667788872 3457899977 8997544444444343 689999998754
No 407
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=41.40 E-value=96 Score=22.27 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=45.2
Q ss_pred CCCcccCHHHHHHHH-hccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHHhcCCCcccccCeeEEEeeCCC
Q 014230 269 NLAPEVTQLDLHRHF-HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (428)
Q Consensus 269 nLp~~~t~~~L~~~F-~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (428)
.++..+.-++|..-. +.|| .-.+++... .-..|-..+.++-.+|++.++.. ..-+.|++-....
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fG--q~ldL~y~n--~EllIpl~sQeDLDkaIellDrs----s~~kSLrIlL~~~ 87 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFG--QSMDLHYTN--NELVIPLTTQDDLDKAVELLDRS----IHMKSLKILLVIN 87 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHS--SCEEEEECS--SSSCEECCSHHHHHHHHHHHHHC----SSCCSEEEEEEEC
T ss_pred eccCCccHHHHHHHHHHHhC--CeeeEEEec--ceEEEeccCHHHHHHHHHHHccC----CcccceEEEEecC
Confidence 457778878776544 4677 667777663 35789999999999999998876 4555556544433
No 408
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=39.40 E-value=77 Score=20.56 Aligned_cols=54 Identities=6% Similarity=-0.014 Sum_probs=42.7
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCHHHHHHHHHH
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 319 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~~~A~~A~~~ 319 (428)
.++.|.++.-.--...|...+.. . .+..+.+....+.+.|.|.+.++-..+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~--gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-A--GAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-T--TCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-C--CcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 57899999988888889999988 6 578888887788899999855555566654
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.29 E-value=81 Score=25.31 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=36.1
Q ss_pred eeEecCCCcc---------cCHHHHHHHh--ccCCCceEEEEeecCCCCCcccEEEEEeCCH-HHHHHHH
Q 014230 143 NIFVGDLSPE---------VTDATLFACF--SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ-QDAQSAI 200 (428)
Q Consensus 143 ~l~v~~lp~~---------~~~~~l~~~f--~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~-~~a~~a~ 200 (428)
.+.|-|+|.. .+..+|++.| +.|.++. ++.+..+ .-++|++.|+|.+. ..-..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 4555666652 3356899977 9998875 5566553 35889999999963 3333343
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.23 E-value=1.1e+02 Score=21.43 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=32.0
Q ss_pred HHHHHHhccCCeeEEEEEEeCC-ccEEEEEeCCHHHHHHHHHHhcCC
Q 014230 278 DLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTT 323 (428)
Q Consensus 278 ~L~~~F~~~G~~~i~~i~i~~~-~g~afV~f~~~~~A~~A~~~l~g~ 323 (428)
.|.+.....| ..+.++.+... .||.||++...++...+++...|.
T Consensus 28 ~L~~~~~~~~-l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 28 LMASRAEKEQ-LDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHHTT-CCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHHhcC-CcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 3444333344 35777777754 899999999999988888776664
No 411
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=29.67 E-value=1e+02 Score=19.39 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=40.7
Q ss_pred eeEEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCCccEEEEEeCCH---HHHHHHHH
Q 014230 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH---AEAALAIQ 318 (428)
Q Consensus 263 ~~l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~~g~afV~f~~~---~~A~~A~~ 318 (428)
.++.|.++.-.--...|...+.... .+..+.+....+.+.|.|.+. ++...+++
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~--gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVP--GVQSCQVNFALEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTST--TEEEEEEETTTTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCC--CeEEEEEEecCCEEEEEECCCCCHHHHHHHHH
Confidence 4688889988777888999999886 578888888888899998533 33444444
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.56 E-value=92 Score=21.77 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=40.6
Q ss_pred EEEcCCCcccCHHHHHHHHhccCCeeEEEEEEeCC---ccEEEEEeCCHHHHHHHHHH
Q 014230 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQM 319 (428)
Q Consensus 265 l~V~nLp~~~t~~~L~~~F~~~G~~~i~~i~i~~~---~g~afV~f~~~~~A~~A~~~ 319 (428)
-++...+...+..+|++.++.+=.+.+..|....- ..-|+|++....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 44456788999999999998743378888877643 34699999988877765543
No 413
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=26.46 E-value=1.6e+02 Score=20.40 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=44.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCceeEEEeecCCCceEEEEEccHHHHHHHHHHh
Q 014230 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (428)
Q Consensus 55 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~i~~~~~~~~g~afV~f~~~~~A~~a~~~l 114 (428)
..+-+.|-|+|..+-..++.-.....|----| |--.|.|.+.|.+.++-..|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefyc----dyidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYC----DYIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEE----EECSSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEee----eeecCeeEEEecCChHHHHHHHHH
Confidence 45779999999999998888877777753333 333467999999999999999875
Done!