Query 014235
Match_columns 428
No_of_seqs 144 out of 1282
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:54:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 3.5E-98 1E-102 764.8 52.9 419 4-427 1-435 (435)
2 1w63_M Adaptor-related protein 100.0 2.3E-99 8E-104 770.9 42.7 422 3-428 1-423 (423)
3 1i31_A Clathrin coat assembly 100.0 4.9E-73 1.7E-77 554.1 31.8 298 127-427 1-314 (314)
4 4en2_M AP-1 complex subunit MU 100.0 7.1E-71 2.4E-75 525.7 29.6 265 160-427 1-265 (266)
5 3ml6_A Chimeric complex betwee 100.0 7.3E-68 2.5E-72 528.7 32.0 270 155-427 101-385 (385)
6 3l81_A AP-4 complex subunit MU 100.0 9.4E-68 3.2E-72 512.0 29.5 270 151-427 14-301 (301)
7 1w63_Q Adapter-related protein 100.0 8.9E-32 3E-36 236.8 16.4 139 4-145 1-142 (158)
8 2vgl_S AP-2 complex subunit si 100.0 7E-31 2.4E-35 227.4 15.0 135 4-141 1-139 (142)
9 3tjz_C Coatomer subunit zeta-1 100.0 1.1E-28 3.9E-33 215.1 18.1 134 3-142 11-150 (153)
10 3g9h_A Suppressor of yeast pro 98.9 5.6E-06 1.9E-10 79.2 30.4 226 170-424 67-325 (328)
11 2nut_C Vesicle-trafficking pro 93.3 1.6 5.5E-05 38.5 13.5 98 3-100 1-102 (196)
12 3cpt_A Mitogen-activated prote 92.8 2 6.9E-05 35.7 12.2 92 5-96 38-135 (143)
13 3cue_A Transport protein parti 92.6 1.8 6.1E-05 38.9 12.4 25 3-27 1-25 (219)
14 2j3t_C Trafficking protein par 91.1 0.92 3.1E-05 38.2 8.5 91 3-97 1-108 (145)
15 2vx8_A Nucleoporin-like protei 91.0 1.3 4.5E-05 38.3 9.6 49 52-100 87-135 (169)
16 3bw6_A Synaptobrevin homolog Y 90.4 4.9 0.00017 33.5 12.5 97 1-99 3-110 (144)
17 1nrj_A Signal recognition part 90.3 2.3 7.8E-05 35.2 9.7 72 4-75 1-92 (158)
18 4b93_A Vesicle-associated memb 90.2 4.5 0.00015 35.4 12.6 83 14-100 11-93 (189)
19 4afi_A AP-3 complex subunit de 89.4 6.1 0.00021 34.1 12.5 83 14-100 63-145 (173)
20 2j3w_A Sedlin, trafficking pro 87.7 5.6 0.00019 33.1 10.9 94 5-100 6-114 (142)
21 2fh5_A Signal recognition part 85.9 7.7 0.00026 33.8 10.9 94 3-99 9-104 (185)
22 3cue_C Transport protein parti 85.7 2 7E-05 36.6 7.1 90 3-98 1-115 (159)
23 3kyq_A YKT6, synaptobrevin hom 76.5 26 0.00088 30.8 11.2 93 5-99 4-107 (199)
24 2j3t_D Trafficking protein par 30.9 37 0.0013 30.3 3.7 20 5-24 3-22 (219)
25 2wl8_A Peroxisomal biogenesis 21.2 1.1E+02 0.0036 24.8 4.3 21 107-127 88-108 (126)
26 1wcu_A CBM29_1, non-catalytic 20.7 1.5E+02 0.0053 23.5 5.0 32 381-420 106-137 (153)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=3.5e-98 Score=764.84 Aligned_cols=419 Identities=39% Similarity=0.748 Sum_probs=368.0
Q ss_pred ceEEEEEEeCCCCEEEEEccCCCCChhHHHHHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCCEEEEEEecCCcCHHHH
Q 014235 4 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASL 83 (428)
Q Consensus 4 Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~t~~~~n~~~~ 83 (428)
||+++||+|++|+++++|+|+++.+++.++.|.+.+....+ ...+|+++.++++|+|+++++|||+++++.|+|++++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~--~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 78 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ--QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV 78 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSS--CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhcccc--CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 89999999999999999999998888889999999886532 2579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecChHHHhhhccCccccccc-----ccCCCCccccc
Q 014235 84 LFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEV-----TQRPPMAVTNA 158 (428)
Q Consensus 84 ~~~L~~i~~~l~~~~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~ 158 (428)
++|||+++++|++||++++|++|++||++||++||||+|+|+|++|+++.|++++.++++..+. +.++|++++++
T Consensus 79 le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (435)
T 2vgl_M 79 FEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQ 158 (435)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999987653 12445567788
Q ss_pred cccccCCCccccceEEEEEEEeeeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCC-----C--CC
Q 014235 159 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRS-----T--KG 231 (428)
Q Consensus 159 v~wR~~~~~~~~nei~vdV~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~-----~--~~ 231 (428)
+|||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++.++++ + ..
T Consensus 159 i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~ 238 (435)
T 2vgl_M 159 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 238 (435)
T ss_dssp CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC----------------
T ss_pred cccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998665433211 0 12
Q ss_pred ceEEeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeecCCCcceee
Q 014235 232 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTAT 311 (428)
Q Consensus 232 ~~i~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~ei~l~~~~~~~~~~~~~ 311 (428)
.++.|+||+|||||++++|+++|.|+|+||||+|+||+||++.+..||+.+.|+++..+++++|++++++++++++..++
T Consensus 239 ~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~ 318 (435)
T 2vgl_M 239 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ 318 (435)
T ss_dssp -CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEE
T ss_pred CceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceee
Confidence 46789999999999999999999999999999999999999887755555689998766679999999999999888899
Q ss_pred eEEEEecCCCCCCCceEEeccceEEEeCCCcEEEEEeceeCCCCeeEEEEEEEecCCCCCCCCCCCCCCEEEEEEECccc
Q 014235 312 NVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFT 391 (428)
Q Consensus 312 ~v~v~iplP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~k~~g~~~~~l~~~i~~~~~~~~~~~~~~~~pi~v~F~ip~~t 391 (428)
+|.|+||+|+++.++++++++|+++|++++++++|+|++++|+++++++|++++++......+ .++||+|+|++| ++
T Consensus 319 ~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~--~~~pi~v~F~i~-~t 395 (435)
T 2vgl_M 319 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FA 395 (435)
T ss_dssp EEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCC--CCCCEEEEEEES-SC
T ss_pred EEEEEEECCCCCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCccc--CCCcEEEEEEEE-ec
Confidence 999999999999999999999999999999999999999999999999999999775333334 789999999999 99
Q ss_pred ccccEEEEEEEEEc----CCCCCccceEEEEEeCcEEEEe
Q 014235 392 VSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL 427 (428)
Q Consensus 392 ~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~r~ 427 (428)
+|||+|++|+|.++ ++|+|+|||||+|+||+|++|+
T Consensus 396 ~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~ 435 (435)
T 2vgl_M 396 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435 (435)
T ss_dssp TTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred ccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence 99999999999986 5899999999999999999995
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.3e-99 Score=770.93 Aligned_cols=422 Identities=59% Similarity=1.087 Sum_probs=367.4
Q ss_pred cceEEEEEEeCCCCEEEEEccCCCCChhHHHHHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCCEEEEEEecCCcCHHH
Q 014235 3 GAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAAS 82 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~t~~~~n~~~ 82 (428)
|||+++||+|++|+++++|+|+++.+++.++.|.+++.++.+. ...+|+++.++++|+|+++++|||+++++.|+|+++
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~-~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEE-GMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHT-SCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 5999999999999999999999988888899999998865221 257999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecChHHHhhhccCccccccccc-CCCCcccccccc
Q 014235 83 LLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQ-RPPMAVTNAVSW 161 (428)
Q Consensus 83 ~~~~L~~i~~~l~~~~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~v~w 161 (428)
+++|||+++++|++||+.++|++|++||+++|++||||+|+|+|++|+++.|++++.++++..+.++ +++++.++++||
T Consensus 80 ~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~w 159 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSW 159 (423)
T ss_dssp HHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC-----------CCS
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccccccCCcccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998743222 445566788999
Q ss_pred ccCCCccccceEEEEEEEeeeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCCCCCceEEecccee
Q 014235 162 RSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKF 241 (428)
Q Consensus 162 R~~~~~~~~nei~vdV~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~i~l~d~~f 241 (428)
|+.|++|++|||||||+|+++++++++|.+++++|.|.|.|+|+|+|+|+|+|+||++..++.+++ +...++.++||+|
T Consensus 160 r~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~-~~~~~v~l~d~~f 238 (423)
T 1w63_M 160 RSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDVKF 238 (423)
T ss_dssp SCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC--------------CEEEEEE
T ss_pred cccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc-cccCceEcccccc
Confidence 999999999999999999999999999999999999999999999999999999999876554332 2335678999999
Q ss_pred eeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeecCCCcceeeeEEEEecCCC
Q 014235 242 HQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSS 321 (428)
Q Consensus 242 H~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~ei~l~~~~~~~~~~~~~~v~v~iplP~ 321 (428)
||||++++|+++|.|+|+||||+|+||+||++.+..||+.+.|+++..+++++|++++++++++.+..+++|.|+||+|+
T Consensus 239 HpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~ 318 (423)
T 1w63_M 239 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPN 318 (423)
T ss_dssp CTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSEEESCEEEEECCT
T ss_pred cccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcceeeEEEEEEeCCC
Confidence 99999999999999999999999999999998877555567899987667799999999999999888999999999999
Q ss_pred CCCCceEEeccceEEEeCCCcEEEEEeceeCCCCeeEEEEEEEecCCCCCCCCCCCCCCEEEEEEECcccccccEEEEEE
Q 014235 322 DASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLK 401 (428)
Q Consensus 322 ~~~~~~~~~~~G~~~~~~~~~~l~W~I~k~~g~~~~~l~~~i~~~~~~~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~ 401 (428)
++.++++++++|+++|++++++++|+|++++|+++++++|++++++......+ .++||+|+|++|++++|||+|++|+
T Consensus 319 ~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~~~~~--~~~pi~v~F~i~~~t~Sgl~V~~l~ 396 (423)
T 1w63_M 319 DADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKE--GKPPISVKFEIPYFTTSGIQVRYLK 396 (423)
T ss_dssp TCCCCEEEESSSEEEEETGGGEEEEECSEEETTCEEEEEEEEEC------------CCCEEEEBCCSSCCTTCCCEEEEE
T ss_pred CcccceEEecCccEEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCccccc--CCCcEEEEEEECCEeCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999765422233 7999999999999999999999999
Q ss_pred EEEcCCCCCccceEEEEEeCcEEEEeC
Q 014235 402 IIEKSGYHALPWVRYITMAGEYELRLI 428 (428)
Q Consensus 402 v~~~~~~~~~k~vrY~t~sg~Y~~r~~ 428 (428)
|.++++|+|+|||||+|+||+|++|++
T Consensus 397 v~~~~~y~~~kwVrY~t~sg~y~~R~~ 423 (423)
T 1w63_M 397 IIEKSGYQAIPWVRYITQNGDYQLRTQ 423 (423)
T ss_dssp EECSSCCCCEEEEEEEEEBSCEEECCC
T ss_pred eEccCCCCCcCceEEEEeCCcEEEecC
Confidence 998778999999999999999999974
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=4.9e-73 Score=554.14 Aligned_cols=298 Identities=40% Similarity=0.753 Sum_probs=234.7
Q ss_pred eecChHHHhhhccCccccccc-----ccCCCCccccccccccCCCccccceEEEEEEEeeeEEEeccCcEEEEEEEEEEE
Q 014235 127 QYTEANILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALK 201 (428)
Q Consensus 127 ~~t~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~v~wR~~~~~~~~nei~vdV~E~i~~~~~~~G~v~~~~v~G~i~ 201 (428)
|+|+++.||++|..+++..+. +..+|++.++++|||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 689999999999999876532 235667788999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeccchhhhhcCCC-------CCCceEEeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecC
Q 014235 202 MRTYLSGMPECKLGLNDRILLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNT 274 (428)
Q Consensus 202 ~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~i~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~ 274 (428)
|+|+|+|||+|+|+||+...++.++.+ ....++.|+||+|||||++++|+++|.|+|+||||+|+||+||++.
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~ 160 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK 160 (314)
T ss_dssp EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS
T ss_pred EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC
Confidence 999999999999999998766543221 0134678999999999999999999999999999999999999988
Q ss_pred CCCCcEEEEEEEEEccceEEEEEEEeeecCCCcceeeeEEEEecCCCCCCCceEEeccceEEEeCCCcEEEEEeceeCCC
Q 014235 275 QVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGG 354 (428)
Q Consensus 275 ~~~P~~~v~~~~~~~~~~~~ei~l~~~~~~~~~~~~~~v~v~iplP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~k~~g~ 354 (428)
+..||+.+.|+++..+++++||+++++++|+.+..++||.|+||+|+++.++++++++|+++|++++++++|+|++++|+
T Consensus 161 ~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~g~ 240 (314)
T 1i31_A 161 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGM 240 (314)
T ss_dssp SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEEEEEEEEEESS
T ss_pred CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceEEEecCCCEEEEEeCcCCCC
Confidence 77555556899987666799999999999999889999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEecCCCCCCCCCCCCCCEEEEEEECcccccccEEEEEEEEEc----CCCCCccceEEEEEeCcEEEEe
Q 014235 355 KEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL 427 (428)
Q Consensus 355 ~~~~l~~~i~~~~~~~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~r~ 427 (428)
++++|+|++++++......+ .++||+|+|++| +++|||+|++|+|.++ ++|+|+|||||+|+||+|++|+
T Consensus 241 ~e~~l~~~~~l~s~~~~~~~--~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~~R~ 314 (314)
T 1i31_A 241 KESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 314 (314)
T ss_dssp EEEEEEEEEEECCCCSSSCC--CCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEEECC
T ss_pred CcEEEEEEEEecCCCcCCcc--CCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEEEcC
Confidence 99999999999875323334 799999999999 9999999999999986 5899999999999999999995
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=7.1e-71 Score=525.74 Aligned_cols=265 Identities=66% Similarity=1.204 Sum_probs=240.5
Q ss_pred ccccCCCccccceEEEEEEEeeeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCCCCCceEEeccc
Q 014235 160 SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDI 239 (428)
Q Consensus 160 ~wR~~~~~~~~nei~vdV~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~i~l~d~ 239 (428)
+||+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|+|+|+|+||+...++..++ +...++.++||
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~-~~~~~~~l~d~ 79 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDV 79 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTC-TTSCCBCCEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccc-cccCccCcccc
Confidence 69999999999999999999999999999999999999999999999999999999999987665543 22356789999
Q ss_pred eeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeecCCCcceeeeEEEEecC
Q 014235 240 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPV 319 (428)
Q Consensus 240 ~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~ei~l~~~~~~~~~~~~~~v~v~ipl 319 (428)
+||+||++++|+++|.|+|+||||+|+||+||++.+..||+.+.|+++..+++++++.++++++|+.+..++||.|+||+
T Consensus 80 ~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~I~IP~ 159 (266)
T 4en2_M 80 KFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPV 159 (266)
T ss_dssp EECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEEEEEEC
T ss_pred ccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEEEEECC
Confidence 99999999999999999999999999999999998877777788999877667999999999999999999999999999
Q ss_pred CCCCCCceEEeccceEEEeCCCcEEEEEeceeCCCCeeEEEEEEEecCCCCCCCCCCCCCCEEEEEEECcccccccEEEE
Q 014235 320 SSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRY 399 (428)
Q Consensus 320 P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~k~~g~~~~~l~~~i~~~~~~~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~ 399 (428)
|.++.++++.++.|+++|++++++++|+|++++|+++++|+|++++++....+.+ .++||+|+|++|++++|||+|++
T Consensus 160 P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~~~--~~~pI~v~F~ip~~t~SGl~V~~ 237 (266)
T 4en2_M 160 PNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKE--GKPPISVKFEIPYFTTSGIQVRY 237 (266)
T ss_dssp CTTCEEEEEEESSSEEEEETTTTEEEEEEEEEESSCEEEEEEEEEC------------CCCEEEEEEEESEESSCCCEEE
T ss_pred CCCcCcceEEecCceEEEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCCcc--cCCcEEEEEEeCCceeCCcEEEE
Confidence 9999999999999999999999999999999999999999999999875333344 79999999999999999999999
Q ss_pred EEEEEcCCCCCccceEEEEEeCcEEEEe
Q 014235 400 LKIIEKSGYHALPWVRYITMAGEYELRL 427 (428)
Q Consensus 400 l~v~~~~~~~~~k~vrY~t~sg~Y~~r~ 427 (428)
|+|.++.+|+|+|||||+||||+|++|+
T Consensus 238 L~v~e~~~y~~~kwVrY~T~sg~y~~R~ 265 (266)
T 4en2_M 238 LKIIEKSGYQALPWVRYITQNGDYQLRT 265 (266)
T ss_dssp EEEECSSCCCEEEEEEEEEECSSEEECC
T ss_pred EEeeccCCCCCCCCEEEEEeCCCEEEec
Confidence 9999878999999999999999999997
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=7.3e-68 Score=528.70 Aligned_cols=270 Identities=40% Similarity=0.737 Sum_probs=236.5
Q ss_pred ccccc-cc---ccCCCccccceEEEEEEEeeeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCC--
Q 014235 155 VTNAV-SW---RSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRS-- 228 (428)
Q Consensus 155 ~~~~v-~w---R~~~~~~~~nei~vdV~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~-- 228 (428)
.++++ || |+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||+...+++.++.
T Consensus 101 ~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~ 180 (385)
T 3ml6_A 101 YSPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTA 180 (385)
T ss_dssp --CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC------------
T ss_pred cCCCCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCcccccccccccc
Confidence 34444 99 7899999999999999999999999999999999999999999999999999999998766543321
Q ss_pred -----CCCceEEeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeec
Q 014235 229 -----TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQ 303 (428)
Q Consensus 229 -----~~~~~i~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~ei~l~~~~~ 303 (428)
+...++.|+||+||+||++++|+++|.|+|+||||+|+||+||++.+..||+.+.|++++.+++++|++++++++
T Consensus 181 ~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~ 260 (385)
T 3ml6_A 181 DETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSN 260 (385)
T ss_dssp ----------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred ccccccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeec
Confidence 123467899999999999999999999999999999999999998877445456899998777899999999999
Q ss_pred CCCcceeeeEEEEecCCCCCCCceEEeccceEEEeCCCcEEEEEeceeCCCCeeEEEEEEEecCCCCCCCCCCCCCCEEE
Q 014235 304 FKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRV 383 (428)
Q Consensus 304 ~~~~~~~~~v~v~iplP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~k~~g~~~~~l~~~i~~~~~~~~~~~~~~~~pi~v 383 (428)
|+.++.+++|.|+||+|+++.++++.++.|+++|++++++++|+|++++|+++++|+|+|.+++......+ .++||+|
T Consensus 261 f~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~~~--~~~PI~v 338 (385)
T 3ml6_A 261 FKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISM 338 (385)
T ss_dssp SCTTCCEEEEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEECSSEEEEEEEEEEECCCSSCCSC--CCCCEEE
T ss_pred CCCcceEEEEEEEecCCCCcccceEEecCceEEEeccCcEEEEEeeeECCCcceEEEEEEEECCCCCCccc--cCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999875433344 7999999
Q ss_pred EEEECcccccccEEEEEEEEEc----CCCCCccceEEEEEeCcEEEEe
Q 014235 384 KFEIPYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL 427 (428)
Q Consensus 384 ~F~ip~~t~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~r~ 427 (428)
+|++| +++|||+|++|+|.++ ++|+|+|||||+|+||+|++|+
T Consensus 339 ~F~Ip-~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~R~ 385 (385)
T 3ml6_A 339 NFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 385 (385)
T ss_dssp EEEES-SCTTCCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEEECC
T ss_pred EEEEe-ccccCCEEEEEEEecccCcccCCCccccEEEEEECCCEEecC
Confidence 99999 9999999999999886 5789999999999999999995
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=9.4e-68 Score=511.98 Aligned_cols=270 Identities=29% Similarity=0.560 Sum_probs=222.9
Q ss_pred CCCcccccc-ccccCCCccccceEEEEEEEeeeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCCC
Q 014235 151 PPMAVTNAV-SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST 229 (428)
Q Consensus 151 ~~~~~~~~v-~wR~~~~~~~~nei~vdV~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~ 229 (428)
++.++++++ +||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++.+...
T Consensus 14 ~~~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~ 91 (301)
T 3l81_A 14 PSSAASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRG 91 (301)
T ss_dssp ---------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTC
T ss_pred CchhhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccccccc
Confidence 445666665 99985 899999999999999999999999999999999999999999999999999988765544333
Q ss_pred CCceEEeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCC---CCcEEEEEEEEEccc-eEEEEEEEeeecCC
Q 014235 230 KGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV---KPLIWVEAQVERHSR-SRVEILVKARSQFK 305 (428)
Q Consensus 230 ~~~~i~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~---~P~~~v~~~~~~~~~-~~~ei~l~~~~~~~ 305 (428)
...++.++||+|||||++++|+++|.|+|+||||+|+||+||++.+. +|+. +.|+++..++ +++||+++++++|+
T Consensus 92 ~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~-v~~~v~~~~~~~~ie~~l~l~~~f~ 170 (301)
T 3l81_A 92 YGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFR-LFPSVQWDRGSGRLQVYLKLRCDLL 170 (301)
T ss_dssp CCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEE-EEEEEEECTTTSEEEEEEEEEECSC
T ss_pred ccCceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEE-EEEEEEECCCcEEEEEEEEEecCCC
Confidence 34578899999999999999999999999999999999999998764 5665 5799998654 79999999999999
Q ss_pred CcceeeeEEEEecCCCCCCCce--EEeccceEEEeCCCcEEEEEeceeCCCCeeEEEEEEEecCCCCCC---------CC
Q 014235 306 ERSTATNVEIELPVSSDASNPD--VRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEE---------AT 374 (428)
Q Consensus 306 ~~~~~~~v~v~iplP~~~~~~~--~~~~~G~~~~~~~~~~l~W~I~k~~g~~~~~l~~~i~~~~~~~~~---------~~ 374 (428)
.+..++||.|+||+|+++.++. +.++.|+++| ++++++|+|++++|+++.++++++++++..+.+ .+
T Consensus 171 ~~~~~~nV~I~IPvP~~~~~~~~~~~~~~G~~~y--~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~ 248 (301)
T 3l81_A 171 SKSQALNVRLHLPLPRGVVSLSQELSSPEQKAEL--AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPL 248 (301)
T ss_dssp TTCEEEEEEEEEECCTTCEEEEEEESSTTCEEEE--ETTEEEEEECCEETTCEEEEEEEEECCCCCC------------C
T ss_pred CCcEEEEEEEEEcCCCCcccceEEEeecCceEEE--eCcEEEEEEeeECCCcEEeEEEEEEecCCccccccccccccccc
Confidence 9999999999999999998888 5578899999 899999999999999999999999997643321 33
Q ss_pred CCCCCCEEEEEEECcccccccEEEEEEEEEc--CCCCCccceEEEEEeCcEEEEe
Q 014235 375 PERKAPIRVKFEIPYFTVSGIQVRYLKIIEK--SGYHALPWVRYITMAGEYELRL 427 (428)
Q Consensus 375 ~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~--~~~~~~k~vrY~t~sg~Y~~r~ 427 (428)
.++||+|+|++|++++|||+|++|+|.++ ++|+|+|||||+|+||+|++|+
T Consensus 249 --~~~PI~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~~R~ 301 (301)
T 3l81_A 249 --GLGPASLSFELPRHTCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVIRI 301 (301)
T ss_dssp --CCCCEEEEEEEETCCSSCCCEEEEEEEC-------CEEEEEEEEEEEEEEECC
T ss_pred --cCCCEEEEEEeCCccccCcEEEEEEEecccccCCCCccceEEEEeCCcEEEcC
Confidence 79999999999999999999999999986 3689999999999999999995
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.98 E-value=8.9e-32 Score=236.82 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=129.3
Q ss_pred ceEEEEEEeCCCCEEEEEccCCCCCh---hHHHHHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCCEEEEEEecCCcCH
Q 014235 4 AVSALFLLDIKGRVLVWRDYRGDVSA---KQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNA 80 (428)
Q Consensus 4 Mi~~i~Il~~~G~~l~~r~y~~~~~~---~~~~~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~t~~~~n~ 80 (428)
||+++||+|++|+++++|+|+++.++ ...+.|++++.+++ ...+|+++.++++|+|+++++|||+++++.++|+
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne 77 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARK---PKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE 77 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSC---SSSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccC---CCCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 89999999999999999999998765 56778888887653 2579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecChHHHhhhccCccccc
Q 014235 81 ASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRM 145 (428)
Q Consensus 81 ~~~~~~L~~i~~~l~~~~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~i~~~~~~~ 145 (428)
+++++|||+++++|++|||+++|++|++||+++|++||||+|+|+|++|+++.|+++|.+++...
T Consensus 78 l~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~ 142 (158)
T 1w63_Q 78 LITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQ 142 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999876643
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.97 E-value=7e-31 Score=227.39 Aligned_cols=135 Identities=20% Similarity=0.278 Sum_probs=123.3
Q ss_pred ceEEEEEEeCCCCEEEEEccCCC---CChhHHHHHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCCEEEEEEecCCcCH
Q 014235 4 AVSALFLLDIKGRVLVWRDYRGD---VSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNA 80 (428)
Q Consensus 4 Mi~~i~Il~~~G~~l~~r~y~~~---~~~~~~~~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~t~~~~n~ 80 (428)
||++++|+|++|+++++|+|++. ..++..+.|++++..++ ...+|+++.++++|+|+++++|||+++++.++|+
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~---~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~ 77 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRD---AKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN 77 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCC---TTSCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCC---CCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence 89999999999999999999953 22467889999988543 3589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecC-hHHHhhhccCc
Q 014235 81 ASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE-ANILSEFIKTD 141 (428)
Q Consensus 81 ~~~~~~L~~i~~~l~~~~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~-~~~l~~~i~~~ 141 (428)
+++++|||+++++|++|||+++|++|++||+++|++||||+|+|+|++|+ .+.|+.++.++
T Consensus 78 l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 78 LAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999985 67788887654
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.96 E-value=1.1e-28 Score=215.05 Aligned_cols=134 Identities=19% Similarity=0.302 Sum_probs=117.6
Q ss_pred cceEEEEEEeCCCCEEEEEccCCCC-C---hhHHH-HHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCCEEEEEEecCC
Q 014235 3 GAVSALFLLDIKGRVLVWRDYRGDV-S---AKQAE-RFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQN 77 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~~-~---~~~~~-~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~t~~~ 77 (428)
.||++++|+|.+|+++++|+|+++. + +...+ .+++++. + ..+|++..++++++|+++++|||+++++.+
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r-----~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~ 84 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-R-----TDSEIALLEGLTVVYKSSIDLYFYVIGSSY 84 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-S-----CCCCEEEETTEEEEEEECSSCEEEEEEETT
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-----CCCCEEEECCEEEEEEEECCEEEEEEEcCC
Confidence 4999999999999999999999863 3 23333 4666653 2 237999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHH-hhhcHHHHHhhHHHHHHHHHHHhcCCeeeecChHHHhhhccCcc
Q 014235 78 CNAASLLFFLHRVVDVFKHYF-EELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDA 142 (428)
Q Consensus 78 ~n~~~~~~~L~~i~~~l~~~~-~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~i~~~~ 142 (428)
+|+++++++||+++++|++|| ++++|++|++||+++|++||||+|+|+||+|+++.+...+...+
T Consensus 85 eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 999999999999999999999 78999999999999999999999999999999999999998653
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=5.6e-06 Score=79.22 Aligned_cols=226 Identities=17% Similarity=0.307 Sum_probs=140.0
Q ss_pred cceEEEEEEEeeeEEEeccCcEEEEEEEEEEEEEEEecCC-------CeEEEEeccchhhhhcCCCCCCceEEeccceee
Q 014235 170 KNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGM-------PECKLGLNDRILLEAQGRSTKGKAIDLDDIKFH 242 (428)
Q Consensus 170 ~nei~vdV~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~-------P~~~l~ln~~~~~~~~~~~~~~~~i~l~d~~fH 242 (428)
.-++-..+.|.||+.+.. |.+.++.|.|+|.+ +|..|. +.+.++|++...+++- +-+-+|-
T Consensus 67 ~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEiaL-sy~~~~~s~~p~p~~l~fRL~N~~~Lekv----------~pN~~fv 134 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFKD-GMLQNSQLIGEIAL-NYLPNSVMNSPLPIGINLRINNGAKFEKV----------ILNQAFI 134 (328)
T ss_dssp CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEEE-EEECCSSSCCCCCSEEEEEEETGGGEEEE----------EECTTTE
T ss_pred CCceeEEEEEEEEEEEEC-CcEEEEEEEEEEEE-ecCCCccccCCCCccEEEEecCcchhhee----------eCCHHHh
Confidence 457888999999999986 77999999999865 566652 4577888665433221 1122222
Q ss_pred eeeccccccCCceEEEeCC---CCeEEEEEEEecCCCCCcEEEEEEEEEcc-ceEEEEEEEeeecCCC---cceeeeEEE
Q 014235 243 QCVRLARFENDRTISFIPP---DGSFDLMTYRLNTQVKPLIWVEAQVERHS-RSRVEILVKARSQFKE---RSTATNVEI 315 (428)
Q Consensus 243 ~cV~~~~f~~~~~l~F~PP---dG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~-~~~~ei~l~~~~~~~~---~~~~~~v~v 315 (428)
.++.-. .-.|-++ ...-.+++|+++....|+.+ .|.-+... ...+-+.+++.+.+.. ....+||.+
T Consensus 135 ~~~~~~------eF~vn~~~L~sktv~~lKYqVs~~~~PL~l-~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~ 207 (328)
T 3g9h_A 135 ERVAPE------EFKVNPSFIDSRTLGAIKYSIKEPIAPIVI-HPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVV 207 (328)
T ss_dssp EEEETT------EEEECTTTTBTCEEEEEEEEEESCCCSEEE-EEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEEE
T ss_pred ccCCCC------CEEEchHHhcccceeeEEEEECCCCCCeEE-EeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEEE
Confidence 222211 1112111 12356899999876678775 55544432 2344444444555665 567899999
Q ss_pred EecCCCCCCCceEEeccceEEEeCCCcEEEEEece-e--CCCCe-eEEEEEEEecCCCCCCCCCCCCCCEEEEEEECcc-
Q 014235 316 ELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRS-F--PGGKE-YMLRAEFTLPSITAEEATPERKAPIRVKFEIPYF- 390 (428)
Q Consensus 316 ~iplP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~k-~--~g~~~-~~l~~~i~~~~~~~~~~~~~~~~pi~v~F~ip~~- 390 (428)
..|+... .++...+.-.+.|..+++.+.|+|+. + ..+.+ ..|.|+|...+... + ....+.+.|++.+.
T Consensus 208 ~V~ldGa--~ats~qskP~gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~~~--~---~~~gV~akF~~~~~~ 280 (328)
T 3g9h_A 208 FVNIDGA--NATSALSKPQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLAH--E---SAKGVITKFTISETD 280 (328)
T ss_dssp EEEBCSS--CEEEEEESSSCCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEESSCCC--B---CSSCEEEEEEECCCS
T ss_pred EEEeCCC--ceeEEEecCCceeccccCEEEEECCCCcccccCCCCCeEEEEEEcCCCCC--C---CCCcEEEEEEEeCCC
Confidence 9999652 22222333356888999999999987 3 32223 68999998733221 1 22339999999875
Q ss_pred --------cccccEEEEEEEEEcCCCCCc--cceEEEE----EeCcEE
Q 014235 391 --------TVSGIQVRYLKIIEKSGYHAL--PWVRYIT----MAGEYE 424 (428)
Q Consensus 391 --------t~SGl~V~~l~v~~~~~~~~~--k~vrY~t----~sg~Y~ 424 (428)
.-|||.|......++ .|| .|.---| -+|.|+
T Consensus 281 ~~~~~~~~~gsgi~i~~~~~~~~---dPF~~~W~~v~~~r~l~~G~Y~ 325 (328)
T 3g9h_A 281 NVALPHSGAGSGITLTCQELDEN---NPFGGEWLDVNTKRTLTTGNYH 325 (328)
T ss_dssp CSSCTTTTCSCCCEEEEEEESSS---CTTCCCCEECEEEEEEEEEEEE
T ss_pred cccccccccCCceeEEecccccC---CCCcCcccccceEEEEeeeEEE
Confidence 468999988866532 233 4753322 346775
No 11
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=93.33 E-value=1.6 Score=38.53 Aligned_cols=98 Identities=10% Similarity=0.124 Sum_probs=62.5
Q ss_pred cceEEEEEEeC-CCCEEEEEccCCCC---ChhHHHHHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCCEEEEEEecCCc
Q 014235 3 GAVSALFLLDI-KGRVLVWRDYRGDV---SAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNC 78 (428)
Q Consensus 3 ~Mi~~i~Il~~-~G~~l~~r~y~~~~---~~~~~~~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~t~~~~ 78 (428)
+||....|.-. +|-+|.+..-.+.. .+.....+.+.+...-......---++.+++.|.|...+++.++|+++.+-
T Consensus 1 ~Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 1 SMVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp -CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred CceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 46666666543 57777764321111 223344555555543211011112456788888899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh
Q 014235 79 NAASLLFFLHRVVDVFKHYFEE 100 (428)
Q Consensus 79 n~~~~~~~L~~i~~~l~~~~~~ 100 (428)
+.-.++.||..+.+-+..-++.
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998877665553
No 12
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=92.84 E-value=2 Score=35.74 Aligned_cols=92 Identities=9% Similarity=0.109 Sum_probs=64.7
Q ss_pred eEEEEEEeCCCCEEEEEccCCCCC----hhHHHHHHHHHhhccC-CCCCCCCeE-EeCCEEEEEEEeCCEEEEEEecCCc
Q 014235 5 VSALFLLDIKGRVLVWRDYRGDVS----AKQAERFFTKLIEKDG-DAQSQDPVV-YDNGVSYLFIQHSNVYLMTASRQNC 78 (428)
Q Consensus 5 i~~i~Il~~~G~~l~~r~y~~~~~----~~~~~~f~~~~~~~~~-~~~~~~pii-~~~~~~~v~~~~~~ly~v~~t~~~~ 78 (428)
+.+|+|.|++|-+++.-...+... .+.+..|....-+.++ ..+++..++ .++++.+++.....+++-.+++.+.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 589999999999999877655322 1345555554433211 113444554 5788899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 014235 79 NAASLLFFLHRVVDVFKH 96 (428)
Q Consensus 79 n~~~~~~~L~~i~~~l~~ 96 (428)
|.-.++.+=+.+..+|++
T Consensus 118 NtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHH
Confidence 998888775555555554
No 13
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=92.59 E-value=1.8 Score=38.86 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=21.9
Q ss_pred cceEEEEEEeCCCCEEEEEccCCCC
Q 014235 3 GAVSALFLLDIKGRVLVWRDYRGDV 27 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~~ 27 (428)
|||.+|+|+|+.|..+++|.|..+.
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~ 25 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDE 25 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCC
T ss_pred CeeEEEEEEeCCCCEEeehhhccCc
Confidence 5799999999999999999998644
No 14
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=91.10 E-value=0.92 Score=38.17 Aligned_cols=91 Identities=12% Similarity=0.219 Sum_probs=54.1
Q ss_pred cceEEEEEEeCCCCEEEEEccCCCC----C-hh----------HHHHHHHHHhhccCCCCCCCCeEEeCCE-EEEEEEeC
Q 014235 3 GAVSALFLLDIKGRVLVWRDYRGDV----S-AK----------QAERFFTKLIEKDGDAQSQDPVVYDNGV-SYLFIQHS 66 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~~----~-~~----------~~~~f~~~~~~~~~~~~~~~pii~~~~~-~~v~~~~~ 66 (428)
||+.+++|+|++|.+|+++.|.... + .+ .+..+.+++...+. ...--.++++.+ .++|....
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~--~~~~~~~~t~~ykl~~~~T~T 78 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDM--KDGFLSFQTSRYKLHYYETPT 78 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCC--SSCEEEEECSSCEEEEEECTT
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCC--CCceEEEecCCEEEEEEEcCC
Confidence 5799999999999999999996532 1 11 12222233321110 111124455655 56667778
Q ss_pred CEEEEEEecCCcCHHHHHHHHHHHH-HHHHHH
Q 014235 67 NVYLMTASRQNCNAASLLFFLHRVV-DVFKHY 97 (428)
Q Consensus 67 ~ly~v~~t~~~~n~~~~~~~L~~i~-~~l~~~ 97 (428)
++-|+++++..++. +=++|+++. ++.-+|
T Consensus 79 giKFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 79 GIKVVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp SCEEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred CCEEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 99999999876543 335566666 455554
No 15
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=91.03 E-value=1.3 Score=38.27 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=43.5
Q ss_pred eEEeCCEEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHHHhh
Q 014235 52 VVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEE 100 (428)
Q Consensus 52 ii~~~~~~~v~~~~~~ly~v~~t~~~~n~~~~~~~L~~i~~~l~~~~~~ 100 (428)
-++.+++.|-|...+++.++|+++.+-.-..++.||+++.+-+..-++.
T Consensus 87 s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y~~ 135 (169)
T 2vx8_A 87 TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS 135 (169)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHHHHHhhh
Confidence 5678899998988999999999999999999999999999888876664
No 16
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=90.42 E-value=4.9 Score=33.54 Aligned_cols=97 Identities=8% Similarity=0.081 Sum_probs=61.4
Q ss_pred CccceEEEEEEeCCC--CEEEEEccCCC----CChhHHHHHH----HHHhhccCCCCCCCCeEEeCCEEEEEE-EeCCEE
Q 014235 1 MAGAVSALFLLDIKG--RVLVWRDYRGD----VSAKQAERFF----TKLIEKDGDAQSQDPVVYDNGVSYLFI-QHSNVY 69 (428)
Q Consensus 1 ~~~Mi~~i~Il~~~G--~~l~~r~y~~~----~~~~~~~~f~----~~~~~~~~~~~~~~pii~~~~~~~v~~-~~~~ly 69 (428)
|+|=|.++.|+-.++ -++++..+.-. ..|+...+|. +.+..+... + .---++.+++.+.|. ..+++.
T Consensus 3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~-~-~R~sv~~~~y~fH~~~~~~gl~ 80 (144)
T 3bw6_A 3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-G-QRQSIEEGNYIGHVYARSEGIC 80 (144)
T ss_dssp CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT-T-EEEEEEETTEEEEEEECTTSEE
T ss_pred cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC-C-ceEEEEeCCEEEEEEEecCCEE
Confidence 777788887775432 34455443321 2244555543 344443211 1 112456788777777 669999
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHHHHHHh
Q 014235 70 LMTASRQNCNAASLLFFLHRVVDVFKHYFE 99 (428)
Q Consensus 70 ~v~~t~~~~n~~~~~~~L~~i~~~l~~~~~ 99 (428)
++|+++.+-+--..+.||+.+.+-...-++
T Consensus 81 ~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 81 GVLITDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 999999999999999998877766655444
No 17
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=90.28 E-value=2.3 Score=35.25 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=49.4
Q ss_pred ceEEEEEEeCCCCEEEEEc-cCCCCChhHHHHHHHHHhhccCC----------CCCCCCeEEe-------CCEEEEEE--
Q 014235 4 AVSALFLLDIKGRVLVWRD-YRGDVSAKQAERFFTKLIEKDGD----------AQSQDPVVYD-------NGVSYLFI-- 63 (428)
Q Consensus 4 Mi~~i~Il~~~G~~l~~r~-y~~~~~~~~~~~f~~~~~~~~~~----------~~~~~pii~~-------~~~~~v~~-- 63 (428)
||+.+.|+...|++|++.+ +........+.+|..+++..+-. .+..-+++.+ ++..+.|.
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 9999999999999999977 44445556788999988764310 0113466776 66666664
Q ss_pred EeCCEEEEEEec
Q 014235 64 QHSNVYLMTASR 75 (428)
Q Consensus 64 ~~~~ly~v~~t~ 75 (428)
+.-.||||++--
T Consensus 81 kQP~LyfVvtya 92 (158)
T 1nrj_A 81 KQPELYFVVTFA 92 (158)
T ss_dssp ETTEEEEEEEES
T ss_pred CCCcEEEEEEec
Confidence 456798887763
No 18
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=90.25 E-value=4.5 Score=35.42 Aligned_cols=83 Identities=8% Similarity=0.184 Sum_probs=57.4
Q ss_pred CCCEEEEEccCCCCChhHHHHHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHHHH
Q 014235 14 KGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDV 93 (428)
Q Consensus 14 ~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~t~~~~n~~~~~~~L~~i~~~ 93 (428)
+|.++++.+-... . -...+.+.+...-.. ...---++.+++.|.|...+++.++|+++.+-+--.++.||..+.+-
T Consensus 11 rg~~iLae~t~~~--g-nf~~ia~~iL~kip~-~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~e 86 (189)
T 4b93_A 11 RGTTILAKHAWCG--G-NFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 86 (189)
T ss_dssp ETTEEEEEEESSE--E-CHHHHHHHHHTTCCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred eCCEEEEeCCCCC--C-CHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHH
Confidence 6888887652221 1 133334444433211 11112567899999999999999999999999999999999999888
Q ss_pred HHHHHhh
Q 014235 94 FKHYFEE 100 (428)
Q Consensus 94 l~~~~~~ 100 (428)
+..-++.
T Consensus 87 F~~~~~~ 93 (189)
T 4b93_A 87 FQTTYGS 93 (189)
T ss_dssp HHHHHGG
T ss_pred HHhhccc
Confidence 8776664
No 19
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=89.36 E-value=6.1 Score=34.12 Aligned_cols=83 Identities=8% Similarity=0.169 Sum_probs=58.5
Q ss_pred CCCEEEEEccCCCCChhHHHHHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHHHH
Q 014235 14 KGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDV 93 (428)
Q Consensus 14 ~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~t~~~~n~~~~~~~L~~i~~~ 93 (428)
+|.++++.+-.... -.+.+-+.+..+... ...---++.+++.|.|...+++.++|+++.+-.--..+.||..+.+-
T Consensus 63 rg~tiLAE~t~~~g---nf~~va~~iL~kip~-~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~e 138 (173)
T 4afi_A 63 RGTTILAKHAWCGG---NFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 138 (173)
T ss_dssp ETTEEEEEEESSCC---CHHHHHHHHHTTSCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCC---CHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHHH
Confidence 57777775532221 133455555543211 01112567899999999999999999999999999999999999988
Q ss_pred HHHHHhh
Q 014235 94 FKHYFEE 100 (428)
Q Consensus 94 l~~~~~~ 100 (428)
+..-++.
T Consensus 139 F~~~yg~ 145 (173)
T 4afi_A 139 FQTTYGS 145 (173)
T ss_dssp HHHHHGG
T ss_pred HHHHhch
Confidence 8877764
No 20
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=87.74 E-value=5.6 Score=33.10 Aligned_cols=94 Identities=9% Similarity=0.064 Sum_probs=54.1
Q ss_pred eEEEEEEeCCCCEEEEEccCCCCCh----h--HHHHH--HHH---HhhccCCCCCCCCeEEe---CCE-EEEEEEeCCEE
Q 014235 5 VSALFLLDIKGRVLVWRDYRGDVSA----K--QAERF--FTK---LIEKDGDAQSQDPVVYD---NGV-SYLFIQHSNVY 69 (428)
Q Consensus 5 i~~i~Il~~~G~~l~~r~y~~~~~~----~--~~~~f--~~~---~~~~~~~~~~~~pii~~---~~~-~~v~~~~~~ly 69 (428)
+.+++|+|++|++|+.+.|...... . ..-.| ... +.+.... ....-+..+ +++ .+.|....++-
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~-~~~~~l~~~~~~~~y~v~~~~T~tg~K 84 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWL-SNNMYLKTVDKFNEWFVSAFVTAGHMR 84 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGG-CSCSEEEEEEEETTEEEEEEECTTCCE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCC-CCcceeEeeecccceEEEEEEcCCCcE
Confidence 7899999999999999999764321 1 11111 111 1111000 011112233 332 46667778899
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHHHHHHhh
Q 014235 70 LMTASRQNCNAASLLFFLHRVVDVFKHYFEE 100 (428)
Q Consensus 70 ~v~~t~~~~n~~~~~~~L~~i~~~l~~~~~~ 100 (428)
|+++++.. +...+-++++++.++.-+|+-+
T Consensus 85 fvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N 114 (142)
T 2j3w_A 85 FIMLHDVR-QEDGIKNFFTDVYDLYIKFAMN 114 (142)
T ss_dssp EEEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence 99999753 3555667777777666665543
No 21
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=85.90 E-value=7.7 Score=33.84 Aligned_cols=94 Identities=7% Similarity=0.122 Sum_probs=60.4
Q ss_pred cceEEEEEEeCCCCEEEEEccCCCCChhHHHHHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCC--EEEEEEecCCcCH
Q 014235 3 GAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSN--VYLMTASRQNCNA 80 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~--ly~v~~t~~~~n~ 80 (428)
+|++.+.|++..|=+|-+..-......+.+.++.+.+.-... ...+.+..+++..=+...|+ |.||++-..-.+.
T Consensus 9 ~~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L 85 (185)
T 2fh5_A 9 SMVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTL 85 (185)
T ss_dssp CSCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGH
T ss_pred cceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccc---cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccc
Confidence 699999999999988887432222223467788877654321 22345778888777777776 6888876655566
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 014235 81 ASLLFFLHRVVDVFKHYFE 99 (428)
Q Consensus 81 ~~~~~~L~~i~~~l~~~~~ 99 (428)
..+=+||..+...+.+-++
T Consensus 86 ~YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 86 TYVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6666777777666666664
No 22
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=85.67 E-value=2 Score=36.63 Aligned_cols=90 Identities=9% Similarity=0.183 Sum_probs=50.9
Q ss_pred cceEEEEEEeCCCCEEEEEccCCC-------CC---h-h----------HHHHHHHHHhhccCCCCCCCC--eEEeCC-E
Q 014235 3 GAVSALFLLDIKGRVLVWRDYRGD-------VS---A-K----------QAERFFTKLIEKDGDAQSQDP--VVYDNG-V 58 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~-------~~---~-~----------~~~~f~~~~~~~~~~~~~~~p--ii~~~~-~ 58 (428)
|||.+|+|+|++|.+|++|.|... .+ . + .+..|.+++... ....- .++.+. .
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~----~~~~~f~~~~T~~yk 76 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKG----SVKNDIRSISTGKYR 76 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCS----SSCCCEEEEECSSCB
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCC----CCCCCeEEEeeCCEE
Confidence 579999999999999999999531 10 1 1 111222222111 11112 233444 3
Q ss_pred EEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHHH-HHHHHH
Q 014235 59 SYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVD-VFKHYF 98 (428)
Q Consensus 59 ~~v~~~~~~ly~v~~t~~~~n~~~~~~~L~~i~~-~l~~~~ 98 (428)
.+.|..-.++-||++++..++.+- ++|+++.+ +.-+|.
T Consensus 77 l~~~eT~TgiKFvl~td~~~~~i~--~~l~~iy~~lYv~yv 115 (159)
T 3cue_C 77 VHTYCTASGLWFVLLSDFKQQSYT--QVLQYIYSHIYVKYV 115 (159)
T ss_dssp EEEECCSSCCEEEEECCSSSSCTH--HHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEEeCCCcchHH--HHHHHHHHHHHHHHH
Confidence 556666788999999987654332 45666665 555544
No 23
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=76.49 E-value=26 Score=30.81 Aligned_cols=93 Identities=11% Similarity=0.186 Sum_probs=60.2
Q ss_pred eEEEEEEeCCCC-EE-EEEccCC----CCChhHHHHHHH----HHhhccCCCCCCCCeEEeCCEEEE-EEEeCCEEEEEE
Q 014235 5 VSALFLLDIKGR-VL-VWRDYRG----DVSAKQAERFFT----KLIEKDGDAQSQDPVVYDNGVSYL-FIQHSNVYLMTA 73 (428)
Q Consensus 5 i~~i~Il~~~G~-~l-~~r~y~~----~~~~~~~~~f~~----~~~~~~~~~~~~~pii~~~~~~~v-~~~~~~ly~v~~ 73 (428)
|.++.|+-..|+ ++ +...|.- ...|+...+|.. .+..+... ..---++.+++.|. |...+++.++|+
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 677888876555 32 3333332 233555555443 34443211 11124566777766 788899999999
Q ss_pred ecCCcCHHHHHHHHHHHHHHHHHHHh
Q 014235 74 SRQNCNAASLLFFLHRVVDVFKHYFE 99 (428)
Q Consensus 74 t~~~~n~~~~~~~L~~i~~~l~~~~~ 99 (428)
++.+-+--.++.||..+.+-+..-++
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998887776665
No 24
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=30.87 E-value=37 Score=30.27 Aligned_cols=20 Identities=10% Similarity=0.281 Sum_probs=18.8
Q ss_pred eEEEEEEeCCCCEEEEEccC
Q 014235 5 VSALFLLDIKGRVLVWRDYR 24 (428)
Q Consensus 5 i~~i~Il~~~G~~l~~r~y~ 24 (428)
|.++||+|+.|..++.+.+.
T Consensus 3 iy~~yi~~~~~~liy~~~~~ 22 (219)
T 2j3t_D 3 IFSVYVVNKAGGLIYQLDSY 22 (219)
T ss_dssp EEEEEEECTTSCEEEEEECC
T ss_pred EEEEEEEecCCceEEecccC
Confidence 89999999999999998876
No 25
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=21.25 E-value=1.1e+02 Score=24.78 Aligned_cols=21 Identities=29% Similarity=0.717 Sum_probs=17.4
Q ss_pred HhhHHHHHHHHHHHhcCCeee
Q 014235 107 RDNFVVVYELLDEMMDFGYPQ 127 (428)
Q Consensus 107 ~~n~~~v~~lldE~id~G~p~ 127 (428)
+.+|..|.+++.+|=+.|.|=
T Consensus 88 ~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 88 KARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCc
Confidence 568888999999999988863
No 26
>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi}
Probab=20.75 E-value=1.5e+02 Score=23.54 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=22.2
Q ss_pred EEEEEEECcccccccEEEEEEEEEcCCCCCccceEEEEEe
Q 014235 381 IRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMA 420 (428)
Q Consensus 381 i~v~F~ip~~t~SGl~V~~l~v~~~~~~~~~k~vrY~t~s 420 (428)
..|+|+.| .+.+.++..++..-..|+||+..|
T Consensus 106 ~~VD~~~~--------FDRI~~QD~P~~~~~I~~r~ii~S 137 (153)
T 1wcu_A 106 FEVDDEYQ--------FDRIIVQDGPASNIPIYMRYIIYS 137 (153)
T ss_dssp EEEEEEEE--------ESEEEEEETTCCCCCEEEEEEEEE
T ss_pred EeccCccc--------ccEEEEecCCCCCCeEEEEEEEec
Confidence 45666655 577778775444455799999887
Done!