BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014236
         (428 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TIP|A Chain A, Crystal Structure Of Staphylococcus Aureus Sasg E-G52
           Module
          Length = 132

 Score = 29.3 bits (64), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 339 APGPERSENNNPDRVGNTMEIPGQPDLQQPETG 371
           APG  R E +     G   E+PG+P ++ PETG
Sbjct: 6   APG-HRDEFDPKLPTGEKEEVPGKPGIKNPETG 37


>pdb|3TJ0|A Chain A, Crystal Structure Of Influenza B Virus Nucleoprotein
 pdb|3TJ0|B Chain B, Crystal Structure Of Influenza B Virus Nucleoprotein
          Length = 562

 Score = 28.5 bits (62), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 315 TDATSGPGLRPGSNQAMPPTN-RVDAPGPERSENNNPDRVG 354
           T  T+ P +RP +    PP+N R   P PER+  ++ D VG
Sbjct: 27  TSGTTRPIIRPAT--LAPPSNKRTRNPSPERATTSSEDDVG 65


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,368,076
Number of Sequences: 62578
Number of extensions: 482270
Number of successful extensions: 1083
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 6
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)