Query 014236
Match_columns 428
No_of_seqs 80 out of 82
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:10:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09746 Membralin: Tumour-ass 100.0 1.7E-70 3.6E-75 550.7 15.4 194 9-219 177-375 (375)
2 KOG2092 Uncharacterized conser 100.0 2.5E-61 5.5E-66 473.3 -0.1 368 17-409 1-374 (381)
3 KOG2092 Uncharacterized conser 100.0 2.1E-33 4.5E-38 276.8 3.3 158 8-189 216-381 (381)
4 KOG4220 Muscarinic acetylcholi 30.6 5.9E+02 0.013 28.2 11.3 124 233-362 184-313 (503)
5 PF12679 ABC2_membrane_2: ABC- 30.5 4.5E+02 0.0097 24.5 11.1 28 178-205 172-199 (277)
6 PF12238 MSA-2c: Merozoite sur 20.9 2.4E+02 0.0051 27.9 5.8 26 233-258 93-119 (205)
7 CHL00182 tatC Sec-independent 18.4 3.1E+02 0.0067 27.2 6.2 90 183-272 78-185 (249)
8 PF00902 TatC: Sec-independent 14.9 7.2E+02 0.016 23.6 7.5 92 181-272 59-169 (215)
9 TIGR01257 rim_protein retinal- 14.7 1.6E+03 0.036 29.6 12.2 34 172-205 739-772 (2272)
10 COG4168 SapB ABC-type antimicr 14.6 1.4E+03 0.029 24.0 13.8 158 109-285 4-212 (321)
No 1
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=100.00 E-value=1.7e-70 Score=550.69 Aligned_cols=194 Identities=34% Similarity=0.624 Sum_probs=175.5
Q ss_pred cCCCCcEEEeccceeeccCcccccccCceEEEEEeCC-CCCcCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEE
Q 014236 9 KAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLY 83 (428)
Q Consensus 9 k~~E~~YeYSlEyGfLrLs~~aR~r~nIpt~~VtLd~-~~~CFGd~~~rlLL~~flGYDdILmnSlk----~~~gkGYLr 83 (428)
+.+||++|||+||||||||+++|++|||||++|+||+ +|+||||+|+|++|++|+||||++|+|+| +|+||||||
T Consensus 177 ~~~~y~veYsleyG~LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~ 256 (375)
T PF09746_consen 177 PQDEYIVEYSLEYGFLRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLR 256 (375)
T ss_pred cccceeEEeehhcchhcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeee
Confidence 4568888999999999999999999999999999996 99999999999999999999999999999 578999999
Q ss_pred ecccCeEeeeccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhHH
Q 014236 84 NCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLI 163 (428)
Q Consensus 84 N~~TgE~Yrlv~~~~~~~~sa~~~~ylv~k~~Vli~sLFifF~fT~sVSflLR~Sq~rif~Fiv~L~~~~r~~~P~a~Ll 163 (428)
|++|||||||+++|+. + +++| ++++++|++||++|||||||||||||+|||||+||++++.|++
T Consensus 257 n~~t~e~y~fv~~~~~----~-r~sy--------~~a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~--- 320 (375)
T PF09746_consen 257 NVVTGEHYRFVSMWWM----A-RSSY--------LAAFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIF--- 320 (375)
T ss_pred ecccccceehhhhhhh----h-ccHH--------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccc---
Confidence 9999999999987521 1 1234 4688999999999999999999999999999999988876632
Q ss_pred HHHHHHHhhhhhhHhHHHHHHHHhcccchhHHHHHHHHHHhhhhhceeeecccccc
Q 014236 164 FVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMK 219 (428)
Q Consensus 164 ~~hvI~sLVfvpvmIGM~afMsEFF~D~~lAFyViliVWladqf~aI~cRT~iSkr 219 (428)
.|++..+.+|++||||||||+|||||+++||||||+||+|||||+|||||++|||
T Consensus 321 -~p~a~llt~il~lvgm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c~t~~~~r 375 (375)
T PF09746_consen 321 -FPAAPLLTVILALVGMEAIMSEFFNDTTTAFYVILIVWLADQYDAICCHTPISKR 375 (375)
T ss_pred -cccceeeeeehhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEecCccCCC
Confidence 3555666677888899999999999999999999999999999999999999997
No 2
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-61 Score=473.30 Aligned_cols=368 Identities=57% Similarity=0.876 Sum_probs=331.0
Q ss_pred EeccceeeccCcccccccCceEEEEEeCCCCCcCcchHHHHHHHhhcCchHHHHhhhhccCCceeEEecccCeEeeeccc
Q 014236 17 YTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 96 (428)
Q Consensus 17 YSlEyGfLrLs~~aR~r~nIpt~~VtLd~~~~CFGd~~~rlLL~~flGYDdILmnSlk~~~gkGYLrN~~TgE~Yrlv~~ 96 (428)
|..|+|+..+|++++-+||| +-++.+.++++|||++|++.+++.++||||+|++++.++-+.||.| .+|.|.-||
T Consensus 1 ~~~~~~~~~~P~~~~p~~N~-~~~~~~~ar~P~~pn~~q~~~~N~lv~~rdrlfhal~~~~a~~Ys~-~~~~~frrl--- 75 (381)
T KOG2092|consen 1 YTMEKGYFLLPDEAKPRHNI-TANVSISARHPCFPNRWQQLLINRLVGYRDRLFHALQNSAAQGYSY-YQTREFRRL--- 75 (381)
T ss_pred CchhhcccCCCCCCCCCCCC-CCCCCcccCCCCCCchhhhhcccccccHHHHHHHHHHHHHhhhhhh-ccCHHHHhc---
Confidence 57899999999999999999 6889999999999999999999999999999999999999999999 888888554
Q ss_pred cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhHHHHHHHHHhhhhhh
Q 014236 97 QEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 176 (428)
Q Consensus 97 ~~~~~~sa~~~~ylv~k~~Vli~sLFifF~fT~sVSflLR~Sq~rif~Fiv~L~~~~r~~~P~a~Ll~~hvI~sLVfvpv 176 (428)
+++++-++.|++.||+++|+++|+. .++++++.+|+++.||..|.|++++|..++.|++.++.+|+++++||+|+
T Consensus 76 ---~egs~lf~a~lvl~~l~~ihi~F~r--sp~scl~~~r~~w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~ 150 (381)
T KOG2092|consen 76 ---PEGSALFGAYLVLKCLVLIHILFVR--SPMSCLFTLRETWTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPI 150 (381)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHhhc--CchHHHHHHHhhhhhheeEEEEEEecchhcchHHHHHHhhhcccccccch
Confidence 7788889999999999999999877 78999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcccchhHHHHHHHHHHhhhhhceeeecccccchhhHHHH--HHHHHhheeeeeecccchhHHHHHHHHH
Q 014236 177 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFL--LYFLVFHIYFFSYAYGFSYMALGTAAAF 254 (428)
Q Consensus 177 mIGM~afMsEFF~D~~lAFyViliVWladqf~aI~cRT~iSkr~wpRfFy--LY~~~Fh~Yfysy~ygfSyLAL~ts~lF 254 (428)
+||+..+++||++|+..+||+++.+|+|+.|.+++.||+++|+|+||.|+ +|.+.||+|||+|.+|++|++..++..+
T Consensus 151 aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~e~~~i~k~~~p~e~Lnd~~e~~fh~~~f~~~~g~~Y~veyt~~yg 230 (381)
T KOG2092|consen 151 AIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDSERTPISKKFFPREFLNDLYELVFHIYFFSYAYGFSYLVEYTTAYG 230 (381)
T ss_pred hhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeecccccccCCCCcHHHhcchhhcccchhhhhhccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHH-HHHHHhhhCCCccccccceeccceeeeecccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014236 255 VQHLILYFWNHFEVPALQRFIQ-NRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPP 333 (428)
Q Consensus 255 i~HsMLyF~h~yElPal~r~~~-~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (428)
++|+.+|||+|+|+|+++++++ +|+...+|+|.+++++++++++|+|++ +|....+..+.+..... .++..-+..+
T Consensus 231 ~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~t-l~~~a~N~~~~G~lhn~--q~~ehy~Fva 307 (381)
T KOG2092|consen 231 MLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHIT-LNRTARNRTPSGPLHNT--QNTEHYSFVA 307 (381)
T ss_pred HHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHH-HHHHHhccCCCCccccc--cccceEEEee
Confidence 9999999999999999999999 888899999999999999999999999 88777776665554443 3455556777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCCCchhhH--HHHHHhcCCCccchhhhhhhhhhhhcc
Q 014236 334 TNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQ-QPETGPNPGSMNSFSS--LLLWILGGASSEGLNSFLSMFRDVREQ 409 (428)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (428)
+. .|. .+..+.......| ..|..+.+| +. +.|-.|+| |++|+||||++++++++++||+|+++.
T Consensus 308 ~~-~g~---asYl~a~a~m~if--T~~~smllrysh------hqifvFi~dll~m~el~~a~~~p~aplltv~lalvg~ 374 (381)
T KOG2092|consen 308 DG-GGV---ASYLEAQAEMEIF--TVPASMLLRYSH------HQIFVFISDLLLMWELGGASSEPLAPLLTVFLALVGE 374 (381)
T ss_pred cc-ccH---HHHHHHhhhHhhe--eccccccccccc------cceeehHHHHHHHHHhCCCCCcccchHHHHHHHHhCc
Confidence 33 333 3333333344444 456666666 55 88999999 999999999999999999999999983
No 3
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=2.1e-33 Score=276.76 Aligned_cols=158 Identities=25% Similarity=0.313 Sum_probs=139.3
Q ss_pred ccCCCCcEEEeccceeeccCcccccccCceEEEEEeCCCCCcCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEE
Q 014236 8 TKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLY 83 (428)
Q Consensus 8 ~k~~E~~YeYSlEyGfLrLs~~aR~r~nIpt~~VtLd~~~~CFGd~~~rlLL~~flGYDdILmnSlk----~~~gkGYLr 83 (428)
-|-++|..||+.+||+|||++..|+|++||+++++||+++|||||+..|++|++|+||||++|.+++ |..++||++
T Consensus 216 ~~g~~Y~veyt~~yg~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~tl~~~a~N~~~~G~lh 295 (381)
T KOG2092|consen 216 AYGFSYLVEYTTAYGMLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHITLNRTARNRTPSGPLH 295 (381)
T ss_pred ccCchHHHHHHHHHHHHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhccCCCCccc
Confidence 3566788899999999999999999999999999999999999999999999999999999999997 578899999
Q ss_pred ecccCeEeeeccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh----hhcccc
Q 014236 84 NCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHA----QHRLPT 159 (428)
Q Consensus 84 N~~TgE~Yrlv~~~~~~~~sa~~~~ylv~k~~Vli~sLFifF~fT~sVSflLR~Sq~rif~Fiv~L~~~~----r~~~P~ 159 (428)
|.+|+|||+|+..+. + ..+|+. +.=+|.+||+.+||+|||+||||++||+||+++. ....|+
T Consensus 296 n~q~~ehy~Fva~~~-----g-~asYl~--------a~a~m~ifT~~~smllryshhqifvFi~dll~m~el~~a~~~p~ 361 (381)
T KOG2092|consen 296 NTQNTEHYSFVADGG-----G-VASYLE--------AQAEMEIFTVPASMLLRYSHHQIFVFISDLLLMWELGGASSEPL 361 (381)
T ss_pred cccccceEEEeeccc-----c-HHHHHH--------HhhhHhheeccccccccccccceeehHHHHHHHHHhCCCCCccc
Confidence 999999999996543 1 235663 3446778899999999999999999999998874 455799
Q ss_pred hhHHHHHHHHHhhhhhhHhHHHHHHHHhcc
Q 014236 160 FQLIFVHVIESLVFVPIMIGILFFLFEFYD 189 (428)
Q Consensus 160 a~Ll~~hvI~sLVfvpvmIGM~afMsEFF~ 189 (428)
+||+ +|+++|| ||+ |+|||+
T Consensus 362 apll--tv~lalv------g~~--~aefF~ 381 (381)
T KOG2092|consen 362 APLL--TVFLALV------GED--EAEFFA 381 (381)
T ss_pred chHH--HHHHHHh------Cch--hhhhcC
Confidence 9986 7888876 999 999996
No 4
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=30.63 E-value=5.9e+02 Score=28.25 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=57.1
Q ss_pred heeeeeecccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhCCCccccccceecccee----eeecccC
Q 014236 233 HIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLH----ITRLNTR 308 (428)
Q Consensus 233 h~Yfysy~ygfSyLAL~ts~lFi~HsMLyF~h~yElPal~r~~~~r~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 308 (428)
|+=|++=|+=--+-|..+-++=..=+.+.||+=| +--++|+.++..-+.-....+++--+..| ..+-+.+
T Consensus 184 ~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIy------ret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~ 257 (503)
T KOG4220|consen 184 YIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIY------RETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRS 257 (503)
T ss_pred EEEeecCceeehhHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHhhhhcccccccccccccCcccccccccCCCCC
Confidence 6677775553345555555555555666777655 33445545554444433334444444444 2333334
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCccCCCC
Q 014236 309 NPSLPNT-DATSGPGLRPGSNQAMPPTNRVDAPGP-ERSENNNPDRVGNTMEIPGQ 362 (428)
Q Consensus 309 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 362 (428)
.|+.++. +...+.+.+.+..++.+..+..-..+. +......++..++|+..||.
T Consensus 258 ~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~s 313 (503)
T KOG4220|consen 258 SPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGS 313 (503)
T ss_pred CCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCcccccc
Confidence 4444333 222333334444445544332221111 11112233456677777654
No 5
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=30.50 E-value=4.5e+02 Score=24.47 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=21.9
Q ss_pred hHHHHHHHHhcccchhHHHHHHHHHHhh
Q 014236 178 IGILFFLFEFYDDQLLAFLVLILVWLCE 205 (428)
Q Consensus 178 IGM~afMsEFF~D~~lAFyViliVWlad 205 (428)
+++-.++|-+.+++..|.-+.+.+|+.=
T Consensus 172 ~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 172 ISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 5667788888898998888887777544
No 6
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=20.93 E-value=2.4e+02 Score=27.88 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=14.2
Q ss_pred heeeeeecc-cchhHHHHHHHHHHHHH
Q 014236 233 HIYFFSYAY-GFSYMALGTAAAFVQHL 258 (428)
Q Consensus 233 h~Yfysy~y-gfSyLAL~ts~lFi~Hs 258 (428)
|||==-..+ .+..|+=+|-..+-..+
T Consensus 93 hIy~~d~~v~d~~~lv~~ck~Fl~~~s 119 (205)
T PF12238_consen 93 HIYKEDSEVKDYNGLVKFCKDFLDSES 119 (205)
T ss_pred hccCcccccccHHHHHHHHHHHhcccc
Confidence 665544444 45566666555555444
No 7
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=18.42 E-value=3.1e+02 Score=27.24 Aligned_cols=90 Identities=12% Similarity=0.191 Sum_probs=49.6
Q ss_pred HHHHhcccchhHHHHHHHHHHhhhhhceeeeccc-ccchhhHHHH-----HHHHHhheeeeeecccchhHH---------
Q 014236 183 FLFEFYDDQLLAFLVLILVWLCELFTLISVRTPI-SMKFFPRFFL-----LYFLVFHIYFFSYAYGFSYMA--------- 247 (428)
Q Consensus 183 fMsEFF~D~~lAFyViliVWladqf~aI~cRT~i-Skr~wpRfFy-----LY~~~Fh~Yfysy~ygfSyLA--------- 247 (428)
|+..+----.+++++-+.+|+.+.+.-++--.-. -||+..++.. .+..+...|+.-+|..+..+.
T Consensus 78 f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~s~~lF~~G~~f~y~vvlP~~~~Fl~~f~~~~~~~ 157 (249)
T CHL00182 78 FFSSIKISFYTGLLISSPFIIYQIILFILPGLTKKERKIILPLLISSLVLFGLGLIFAYFVLVPAALNFFINYGSDVVEP 157 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Confidence 4433333444566667777777777666543322 2233333322 334444555555555443222
Q ss_pred ---HHHHHHHHHHHHHHHHhhccchHHH
Q 014236 248 ---LGTAAAFVQHLILYFWNHFEVPALQ 272 (428)
Q Consensus 248 ---L~ts~lFi~HsMLyF~h~yElPal~ 272 (428)
+.--.-|+.+.++.|--.||+|.+.
T Consensus 158 ~~~i~~Yl~f~~~~~l~fGl~FelPvi~ 185 (249)
T CHL00182 158 LWSFDQYFDFILVLFFSTGLAFQIPIIQ 185 (249)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122346778999999999999774
No 8
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=14.86 E-value=7.2e+02 Score=23.61 Aligned_cols=92 Identities=20% Similarity=0.366 Sum_probs=50.3
Q ss_pred HHHHHHhcccchhHHHHHHHHHHhhhhhceeeec-ccccchhhHHHH----H-HHHHhheeeeeecccchhH--------
Q 014236 181 LFFLFEFYDDQLLAFLVLILVWLCELFTLISVRT-PISMKFFPRFFL----L-YFLVFHIYFFSYAYGFSYM-------- 246 (428)
Q Consensus 181 ~afMsEFF~D~~lAFyViliVWladqf~aI~cRT-~iSkr~wpRfFy----L-Y~~~Fh~Yfysy~ygfSyL-------- 246 (428)
|+|+..+.---.+++++.+.+|+.+.+.-++--- +--||+..++.. | +..+...|+.-.|..+.++
T Consensus 59 e~f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~f~~~~~ 138 (215)
T PF00902_consen 59 EAFFTYLKLSFFLGLIISLPYILYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLSFSPTSG 138 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344444445556777777888888777765322 222333333322 2 2223334443444443322
Q ss_pred -----HHHHHHHHHHHHHHHHHhhccchHHH
Q 014236 247 -----ALGTAAAFVQHLILYFWNHFEVPALQ 272 (428)
Q Consensus 247 -----AL~ts~lFi~HsMLyF~h~yElPal~ 272 (428)
.+..-.-|+.+.++.|---||+|.+.
T Consensus 139 ~~~~~~i~~y~~f~~~~~~~~gl~FqlPli~ 169 (215)
T PF00902_consen 139 IQPEPSISSYLNFVIQFLLIFGLIFQLPLIM 169 (215)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345667888999999999874
No 9
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=14.67 E-value=1.6e+03 Score=29.63 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=27.4
Q ss_pred hhhhhHhHHHHHHHHhcccchhHHHHHHHHHHhh
Q 014236 172 VFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCE 205 (428)
Q Consensus 172 VfvpvmIGM~afMsEFF~D~~lAFyViliVWlad 205 (428)
+|...+|..-++||-||+...+|=.+..++|++-
T Consensus 739 ~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~ 772 (2272)
T TIGR01257 739 AFSTATIMQCFLLSTFFSKASLAAACSGVIYFTL 772 (2272)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3445677888999999999999888888888664
No 10
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=14.60 E-value=1.4e+03 Score=23.97 Aligned_cols=158 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh-------------------------hhhhcccc-hhH
Q 014236 109 YLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQH-------------------------HAQHRLPT-FQL 162 (428)
Q Consensus 109 ylv~k~~Vli~sLFifF~fT~sVSflLR~Sq~rif~Fiv~L~~-------------------------~~r~~~P~-a~L 162 (428)
+...|+-.++.+|+ +.|++--++++.+-|--++-+--++. .....+|+ ..|
T Consensus 4 ~tlR~~ll~~ltLl---iLslvgfsl~~fdP~apl~~~~l~~g~~~y~~~Llq~dFGis~~nG~~i~~~l~~vfPaT~EL 80 (321)
T COG4168 4 FTLRRILLLILTLL---ILTLVGFSLSYFDPHAPLQGASLWQGWVFYFNGLLQWDFGISSINGQPIAEQLLEVFPATMEL 80 (321)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHhhhcCCCCchhhhHHHHHHHHHHHHHhcccccccccCCchHHHHHHHhcccHHHH
Q ss_pred HHHHHHHHhhh-hhhHhHHH-HHHHHhcccchhHHHHHHHHHHhhhhhceeeecccccchhhHHHHHHHHHhheeeeeec
Q 014236 163 IFVHVIESLVF-VPIMIGIL-FFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYA 240 (428)
Q Consensus 163 l~~hvI~sLVf-vpvmIGM~-afMsEFF~D~~lAFyViliVWladqf~aI~cRT~iSkr~wpRfFyLY~~~Fh~Yfysy~ 240 (428)
-++..+++++| .|+ ||+ +.+++=+-|+.+.+. +++...-|+ ||+-...+|+++.|..-+.--
T Consensus 81 C~~af~lal~~GiPl--G~iagv~~~kw~d~~is~~-----------s~~G~SiPv---FWlAl~ll~ffslh~~~~pv~ 144 (321)
T COG4168 81 CFLAFGLALIVGIPL--GMIAGVTRHKWLDKLISAI-----------SLLGFSIPV---FWLALLLLLFFSLHLGWLPVS 144 (321)
T ss_pred HHHHHHHHHHHcccH--HHHHHhhhhhHHHHHHHHH-----------HHhccCchH---HHHHHHHHHHHHHhccceecc
Q ss_pred ccch---------hHHHHHHHH------------HHHHHHHHHHhhccchHHH--HHHHHHHHHhhhC
Q 014236 241 YGFS---------YMALGTAAA------------FVQHLILYFWNHFEVPALQ--RFIQNRRTQLQQQ 285 (428)
Q Consensus 241 ygfS---------yLAL~ts~l------------Fi~HsMLyF~h~yElPal~--r~~~~r~~q~~~~ 285 (428)
+||. ++|++-.|+ .+||+.|=..--=-.|--+ |.+++|-+++.+|
T Consensus 145 GrydLLY~ikpiTGfalIDaw~s~spyRt~~~qs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~q 212 (321)
T COG4168 145 GRYDLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQ 212 (321)
T ss_pred cceeeeeeeccccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Done!