Query 014236
Match_columns 428
No_of_seqs 80 out of 82
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:56:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qys_A TOP7; alpha-beta, novel 10.4 24 0.00082 29.2 -2.3 65 4-68 10-79 (106)
2 1vf5_H Protein PET N; photosyn 9.0 1.9E+02 0.0065 19.6 2.1 15 123-137 11-25 (29)
3 1q90_N Cytochrome B6F complex 8.7 2E+02 0.0067 19.8 2.1 15 123-137 13-27 (31)
4 3ijm_A Uncharacterized restric 6.1 3.5E+02 0.012 24.3 3.1 19 79-97 112-130 (151)
5 1e0n_A Hypothetical protein; Y 5.3 3.1E+02 0.011 17.5 1.7 16 75-90 7-22 (27)
6 3n57_C Atrial natriuretic fact 5.2 1.6E+02 0.0054 19.8 0.2 11 46-56 4-14 (28)
7 2pbi_A Regulator of G-protein 4.6 4E+02 0.014 27.1 2.8 59 34-95 34-107 (424)
8 2kv5_A FST, putative uncharact 4.4 5.2E+02 0.018 17.9 2.4 17 172-188 8-24 (33)
9 2kss_A Carotenogenesis protein 3.9 1.3E+03 0.043 19.1 4.8 60 307-367 22-86 (106)
10 2ysi_A Transcription elongatio 3.6 4.7E+02 0.016 17.9 1.6 15 75-89 17-31 (40)
No 1
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=10.37 E-value=24 Score=29.24 Aligned_cols=65 Identities=25% Similarity=0.413 Sum_probs=40.6
Q ss_pred ccccccCCCCcEEEeccceeeccCc---ccccccCceEEEEEeCCCCCcCcchHHHHHHHhh--cCchHH
Q 014236 4 LENRTKAFEPTYLYTMEKGYFLLPE---ADKSRHNIRTFNISISAQHPCFGNRWQQLLINRF--VGYDTI 68 (428)
Q Consensus 4 ~~~~~k~~E~~YeYSlEyGfLrLs~---~aR~r~nIpt~~VtLd~~~~CFGd~~~rlLL~~f--lGYDdI 68 (428)
++...|++||+|.-..|..+-..-. +.-++.+-.-+.|+|.++.+--.+++...+++-| +||.||
T Consensus 10 iddngknfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfaelgyndi 79 (106)
T 1qys_A 10 IDDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYNDI 79 (106)
T ss_dssp EECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ecCCCcccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCcce
Confidence 4567889999888777754321111 1112334444556666666656778888888766 788875
No 2
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=9.03 E-value=1.9e+02 Score=19.58 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhhh
Q 014236 123 VFFTTTMSVSFTLRE 137 (428)
Q Consensus 123 ifF~fT~sVSflLR~ 137 (428)
+|.+||.++|++.+.
T Consensus 11 lmvvftfSlslVVWG 25 (29)
T 1vf5_H 11 LLVVFTWSIAMVVWG 25 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhheeeeEEEEe
Confidence 345567788888764
No 3
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=8.72 E-value=2e+02 Score=19.78 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhhh
Q 014236 123 VFFTTTMSVSFTLRE 137 (428)
Q Consensus 123 ifF~fT~sVSflLR~ 137 (428)
+|.+||+++|++.+.
T Consensus 13 lmvvfTfSlslVVWG 27 (31)
T 1q90_N 13 TCVMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhheeeEEEEEe
Confidence 455667788888764
No 4
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=6.13 E-value=3.5e+02 Score=24.28 Aligned_cols=19 Identities=16% Similarity=0.630 Sum_probs=17.0
Q ss_pred ceeEEecccCeEeeecccc
Q 014236 79 QGYLYNCQTKEFYNLSYAQ 97 (428)
Q Consensus 79 kGYLrN~~TgE~Yrlv~~~ 97 (428)
.||+||..|++-++++.+-
T Consensus 112 EGFVynYkt~~W~rYr~g~ 130 (151)
T 3ijm_A 112 EGFVFNYKTQQWLRYRLGD 130 (151)
T ss_dssp EEEEEETTTTEEEEEETTS
T ss_pred eeeeEeeccCceeEEEcCC
Confidence 8999999999999998653
No 5
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=5.32 E-value=3.1e+02 Score=17.51 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.0
Q ss_pred ccCCceeEEecccCeE
Q 014236 75 HTPGQGYLYNCQTKEF 90 (428)
Q Consensus 75 ~~~gkGYLrN~~TgE~ 90 (428)
.+.|+=|.+|..|||-
T Consensus 7 ~~~g~~YYyN~~T~~s 22 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTK 22 (27)
T ss_dssp ESSSSEEEEETTTTEE
T ss_pred CCCCCeEEEECCCCCE
Confidence 4578889999999873
No 6
>3n57_C Atrial natriuretic factor; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.03A {Homo sapiens} PDB: 1anp_A
Probab=5.24 E-value=1.6e+02 Score=19.81 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=8.4
Q ss_pred CCCcCcchHHH
Q 014236 46 QHPCFGNRWQQ 56 (428)
Q Consensus 46 ~~~CFGd~~~r 56 (428)
.+.|||.+..|
T Consensus 4 ~~gCFG~riDR 14 (28)
T 3n57_C 4 RSSCFGGRMDR 14 (28)
T ss_pred cccccCccccc
Confidence 46899988765
No 7
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=4.58 E-value=4e+02 Score=27.14 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=38.2
Q ss_pred cCceEEEEEeC--CCCCcC-cchHHHHHHHhhcCchHHHHhhhhcc---CCceeEEeccc---------CeEeeecc
Q 014236 34 HNIRTFNISIS--AQHPCF-GNRWQQLLINRFVGYDTILMNSLLHT---PGQGYLYNCQT---------KEFYNLSY 95 (428)
Q Consensus 34 ~nIpt~~VtLd--~~~~CF-Gd~~~rlLL~~flGYDdILmnSlk~~---~gkGYLrN~~T---------gE~Yrlv~ 95 (428)
.||++...... .-..|| |..+..+|++++ +.|+ --++.-. -..||++.+.. +-.|||..
T Consensus 34 ~Gv~i~~~~~~~~~~p~~F~Gsd~V~WL~~~~-~~~~--~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~ 107 (424)
T 2pbi_A 34 TGVRMHNQRVLVTSVPHAMTGGDVLQWITQRL-WISN--LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQT 107 (424)
T ss_dssp TSCCCCCCSSCCCSSCCCEEHHHHHHHHHHHH-TCCH--HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECC
T ss_pred CCCCccceeecceeCCCccccHHHHHHHHHcC-CCCh--HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCC
Confidence 36666654443 235899 999999999988 5665 2333211 24688887754 45788873
No 8
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=4.44 E-value=5.2e+02 Score=17.91 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=11.7
Q ss_pred hhhhhHhHHHHHHHHhc
Q 014236 172 VFVPIMIGILFFLFEFY 188 (428)
Q Consensus 172 VfvpvmIGM~afMsEFF 188 (428)
+..|+.||++--+.+-.
T Consensus 8 IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 8 VIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34688899987665543
No 9
>2kss_A Carotenogenesis protein CARS; antirepressor, activator, carotenoid biosynthesis, transcription, transcription regulation, transcription REGU; NMR {Myxococcus xanthus}
Probab=3.92 E-value=1.3e+03 Score=19.15 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=34.4
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC---CCCCCCCCC-CccCCCCCCCCC
Q 014236 307 TRNPSLPNTDATSGPGLRPGSNQ-AMPPTNRVDAPGPERSE---NNNPDRVGN-TMEIPGQPDLQQ 367 (428)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~ 367 (428)
+|+|..+-+-...|++.|-|..- -+|. ...++-++.-.+ --......+ .+|+|++|..|-
T Consensus 22 ~~dpslii~~dv~gapvrig~~v~iv~~-s~~~si~~rflg~sgivv~lvfddp~~qyp~dpli~v 86 (106)
T 2kss_A 22 IQDPSLIICHDVDGAPVRIGAKVKVVPH-SEDGTISQRFLGQTGIVVGLVFDDPATQYPDDPLIQV 86 (106)
T ss_dssp CCCCCSCCCCCCSSCSSCTTCEEECCSS-CSSSCCCTTTTTCEEEEEECCCCCCTTCSSSSSSCEE
T ss_pred ccCCcEEEEEccCCCceEecceEEEecc-ccCCccChhhcCccceEEEEEeCCchhhCCCCceeEE
Confidence 57888888888889888887655 3444 223333332211 111122223 468888887653
No 10
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=3.56 E-value=4.7e+02 Score=17.90 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=12.4
Q ss_pred ccCCceeEEecccCe
Q 014236 75 HTPGQGYLYNCQTKE 89 (428)
Q Consensus 75 ~~~gkGYLrN~~TgE 89 (428)
..+|+=|.+|..|||
T Consensus 17 ~~~G~~YYyN~~T~e 31 (40)
T 2ysi_A 17 TPDGKVYYYNARTRE 31 (40)
T ss_dssp CTTSCEEEEETTTCC
T ss_pred CCCCCEEEEECCCCC
Confidence 357788999999987
Done!