Query 014236
Match_columns 428
No_of_seqs 80 out of 82
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 07:56:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014236.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014236hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o6wa1 b.72.1.1 (A:1-29) Spli 6.5 1.1E+02 0.0081 18.9 1.7 16 75-90 9-24 (29)
2 d1ywia1 b.72.1.1 (A:15-42) Hun 6.1 1.1E+02 0.0082 18.7 1.5 16 75-90 8-23 (28)
3 d1hr6a2 d.185.1.1 (A:234-470) 4.6 76 0.0055 26.5 -0.1 29 383-413 45-81 (237)
4 d2guka1 d.360.1.1 (A:4-114) Hy 3.5 1.7E+02 0.013 23.1 1.2 12 57-68 90-101 (111)
5 d1id0a_ d.122.1.3 (A:) Histidi 3.4 6.8E+02 0.05 18.7 5.0 54 33-94 23-78 (146)
6 d2dk1a1 b.72.1.1 (A:7-44) WW d 3.2 2.2E+02 0.016 18.2 1.3 16 75-90 8-23 (38)
7 d2acya_ d.58.10.1 (A:) Acylpho 3.1 3.6E+02 0.026 19.5 2.8 34 63-96 20-53 (98)
8 d1v3fa_ a.4.5.31 (A:) Pleckstr 3.1 2.6E+02 0.019 21.4 1.9 15 47-61 35-50 (120)
9 d2axtm1 f.23.35.1 (M:1-36) Pho 3.0 2.8E+02 0.02 17.9 1.6 12 245-256 5-16 (36)
10 d2p12a1 b.175.1.1 (A:8-172) Hy 2.9 1.7E+02 0.012 24.5 0.6 19 71-89 12-30 (165)
No 1
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.48 E-value=1.1e+02 Score=18.88 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.5
Q ss_pred ccCCceeEEecccCeE
Q 014236 75 HTPGQGYLYNCQTKEF 90 (428)
Q Consensus 75 ~~~gkGYLrN~~TgE~ 90 (428)
..+|+=|-+|.+|+|-
T Consensus 9 ~~~G~~YYyN~~T~eS 24 (29)
T d1o6wa1 9 DASGRIYYYNTLTKKS 24 (29)
T ss_dssp CTTCCEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4678999999999983
No 2
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.15 E-value=1.1e+02 Score=18.67 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.4
Q ss_pred ccCCceeEEecccCeE
Q 014236 75 HTPGQGYLYNCQTKEF 90 (428)
Q Consensus 75 ~~~gkGYLrN~~TgE~ 90 (428)
..+|+=|-+|.+|+|-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (28)
T d1ywia1 8 SPDGRTYYYNTETKQS 23 (28)
T ss_dssp ETTTEEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4578999999999983
No 3
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.57 E-value=76 Score=26.48 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=19.1
Q ss_pred HHHHHhcCCCc-------cchhhhhhhhhhhhcc-cccc
Q 014236 383 LLLWILGGASS-------EGLNSFLSMFRDVREQ-GQVF 413 (428)
Q Consensus 383 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~ 413 (428)
+|==||||..+ +|..| ..|+.+||. |-+|
T Consensus 45 vl~~iLGG~~~~~~~~~g~G~sS--rL~~~lre~~gLay 81 (237)
T d1hr6a2 45 TLQTLLGGGGSFSAGGPGKGMYS--RLYTHVLNQYYFVE 81 (237)
T ss_dssp HHHHHHCEEESSCCSSTTSCTTS--HHHHHTTTTCSSEE
T ss_pred HHHHHhCCCcccccCCCCCCccc--HHHHHHHHhcCchh
Confidence 55567887543 56666 478999984 5444
No 4
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.54 E-value=1.7e+02 Score=23.15 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=10.5
Q ss_pred HHHHhhcCchHH
Q 014236 57 LLINRFVGYDTI 68 (428)
Q Consensus 57 lLL~~flGYDdI 68 (428)
|||.-.||||.-
T Consensus 90 FiLG~mLGYD~~ 101 (111)
T d2guka1 90 FIIGAMLGYDIC 101 (111)
T ss_dssp HHHHHHTTCCHH
T ss_pred HHHHHHhcccHH
Confidence 899999999963
No 5
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=3.43 E-value=6.8e+02 Score=18.69 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=33.4
Q ss_pred ccCceEEEEEeCCCCCcCcch--HHHHHHHhhcCchHHHHhhhhccCCceeEEecccCeEeeec
Q 014236 33 RHNIRTFNISISAQHPCFGNR--WQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLS 94 (428)
Q Consensus 33 r~nIpt~~VtLd~~~~CFGd~--~~rlLL~~flGYDdILmnSlk~~~gkGYLrN~~TgE~Yrlv 94 (428)
..+|.+ .+.+++.-.+.+|+ +.+.+.+ ++-|++|+.++++-+.-..+++...+.
T Consensus 23 ~k~i~i-~~~~~~~~~~~~d~~~l~~vl~N-------Ll~NAik~~~~~i~i~~~~~~~~~~i~ 78 (146)
T d1id0a_ 23 RKGVNI-SLDISPEISFVGEQNDFVEVMGN-------VLDNACKYCLEFVEISARQTDEHLYIV 78 (146)
T ss_dssp TTTCEE-EEECCTTCEEESCHHHHHHHHHH-------HHHHHHHHCSSEEEEEEEECSSCEEEE
T ss_pred HCCCEE-EEEcCCCcEEEECHHHHHHHHHH-------HHHHHHHhhcCCEEEEEEeeCCEEEEE
Confidence 446653 34555555677775 4554444 677999977666666666666665554
No 6
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.18 E-value=2.2e+02 Score=18.24 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.1
Q ss_pred ccCCceeEEecccCeE
Q 014236 75 HTPGQGYLYNCQTKEF 90 (428)
Q Consensus 75 ~~~gkGYLrN~~TgE~ 90 (428)
..+|+=|-+|.+|||-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (38)
T d2dk1a1 8 TSEGYHYYYDLISGAS 23 (38)
T ss_dssp CSTTCCCEEESSSCCE
T ss_pred CCCCCEEEEECCCCCE
Confidence 3577889999999984
No 7
>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.12 E-value=3.6e+02 Score=19.51 Aligned_cols=34 Identities=9% Similarity=-0.066 Sum_probs=22.3
Q ss_pred cCchHHHHhhhhccCCceeEEecccCeEeeeccc
Q 014236 63 VGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 96 (428)
Q Consensus 63 lGYDdILmnSlk~~~gkGYLrN~~TgE~Yrlv~~ 96 (428)
+||-..+....+...=+||++|...|+.-=...+
T Consensus 20 VGFR~~v~~~A~~l~L~G~V~N~~dG~Vei~~qG 53 (98)
T d2acya_ 20 VFFRKYTQAEGKKLGLVGWVQNTDQGTVQGQLQG 53 (98)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEE
T ss_pred cCchHHHHHHHHHcCCEEEEEECCCCeEEEEEEE
Confidence 4554444444444444999999999987666543
No 8
>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.08 E-value=2.6e+02 Score=21.39 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=13.0
Q ss_pred CCcC-cchHHHHHHHh
Q 014236 47 HPCF-GNRWQQLLINR 61 (428)
Q Consensus 47 ~~CF-Gd~~~rlLL~~ 61 (428)
..|| |.....+|++.
T Consensus 35 ~~cF~G~e~VdWL~~~ 50 (120)
T d1v3fa_ 35 KKTFLGSSLVDWLISS 50 (120)
T ss_dssp SSCEEHHHHHHHHHHT
T ss_pred CcEEEhHHHHHHHHHh
Confidence 5888 99999999985
No 9
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.00 E-value=2.8e+02 Score=17.89 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHH
Q 014236 245 YMALGTAAAFVQ 256 (428)
Q Consensus 245 yLAL~ts~lFi~ 256 (428)
.|++++++||+.
T Consensus 5 ~Lg~iAt~LFil 16 (36)
T d2axtm1 5 QLGLIATALFVL 16 (36)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 588999999987
No 10
>d2p12a1 b.175.1.1 (A:8-172) Hypothetical protein RHA1_ro00977 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=2.92 E-value=1.7e+02 Score=24.52 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=14.1
Q ss_pred hhhhccCCceeEEecccCe
Q 014236 71 NSLLHTPGQGYLYNCQTKE 89 (428)
Q Consensus 71 nSlk~~~gkGYLrN~~TgE 89 (428)
.+..|.+.||++|.+++=.
T Consensus 12 ~~~~n~dpkG~~R~vd~y~ 30 (165)
T d2p12a1 12 RDHTNTDPKGFVRHVDHYR 30 (165)
T ss_dssp TTTEEECTTSCEEECSEEE
T ss_pred hhheecCCCcceeecceEE
Confidence 3455778999999987533
Done!