BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014237
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OBK|A Chain A, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|B Chain B, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|C Chain C, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|D Chain D, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|E Chain E, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|F Chain F, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|G Chain G, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|H Chain H, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
Length = 356
Score = 335 bits (859), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 179/322 (55%), Positives = 235/322 (72%), Gaps = 3/322 (0%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168
NRK+ A+R QE + P++ +YPLF+H+ E PI +MPG RL L++EV +AR
Sbjct: 26 NRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVPIPSMPGQSRLSM-EDLLKEVGEARS 84
Query: 169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228
G+ + +LFPKV D LKS +E+YN +GL+PR I LK+ +PD+++ DVALDPYSS G
Sbjct: 85 YGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMG 144
Query: 229 HDGIVRED-GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
HDG+V E G I+ND TVHQLCKQA++ ARAGAD+V PSDMMDGRV AIR +LD EG
Sbjct: 145 HDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADMVCPSDMMDGRVSAIRESLDMEGCTD 204
Query: 288 VSIMSYTAKYASSFYGPFREALDSNPRFG-DKKTYQMNPANYREALVEAQADESEGADIL 346
SI++Y+ KYASSFYGPFR+ALDS+ G DKKTYQM+P+N REA EA+AD SEGAD+L
Sbjct: 205 TSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDPSNSREAEREAEADASEGADML 264
Query: 347 LVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 406
+VKPGLPYLDV+ +R+K LP+ AY VSGEY+M+KA I E+ ++E L RRA
Sbjct: 265 MVKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEVLKSFRRA 324
Query: 407 GADIILTYFALQAARCLCGEKR 428
GAD + TY+A +AA+ + + +
Sbjct: 325 GADAVATYYAKEAAKWMVEDMK 346
>pdb|1W1Z|A Chain A, Structure Of The Plant Like 5-Amino Laevulinic Acid
Dehydratase From Chlorobium Vibrioforme
pdb|1W1Z|B Chain B, Structure Of The Plant Like 5-Amino Laevulinic Acid
Dehydratase From Chlorobium Vibrioforme
pdb|2C1H|A Chain A, The X-Ray Structure Of Chlorobium Vibrioforme 5-
Aminolaevulinic Acid Dehydratase Complexed With A Diacid
Inhibitor
pdb|2C1H|B Chain B, The X-Ray Structure Of Chlorobium Vibrioforme 5-
Aminolaevulinic Acid Dehydratase Complexed With A Diacid
Inhibitor
Length = 328
Score = 325 bits (832), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/305 (54%), Positives = 215/305 (70%), Gaps = 5/305 (1%)
Query: 120 QETNLSPANFVYPLFIHEGEEDTP-IGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP 178
QE L+ + V+PLF+ G + +MPG +R V+E + D+G+ + LF
Sbjct: 27 QENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDRA-VEECKELYDLGIQGIDLF- 84
Query: 179 KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238
+P+ K+ G EAYNDNG++ + I +K P+L I TDVALDP++ GHDG+V+ DG+
Sbjct: 85 GIPEQ-KTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVK-DGI 142
Query: 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYA 298
I+NDETV L K AVS A AGAD VSPSDMMDGR+GAIR ALD V I+SY AKYA
Sbjct: 143 ILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETDHSDVGILSYAAKYA 202
Query: 299 SSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVI 358
SSFYGPFR+AL S P+FGDK TYQMNPAN EA+ E + D EGADI++VKPGL YLD++
Sbjct: 203 SSFYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKEVELDIVEGADIVMVKPGLAYLDIV 262
Query: 359 RLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQ 418
++++ +P+A Y VSGEY+M+KA A IDE RVMMESL+C++RAGADII TY+A +
Sbjct: 263 WRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCMKRAGADIIFTYYAKE 322
Query: 419 AARCL 423
AA+ L
Sbjct: 323 AAKKL 327
>pdb|1B4K|A Chain A, High Resolution Crystal Structure Of A Mg2-Dependent
5-Aminolevulinic Acid Dehydratase
pdb|1B4K|B Chain B, High Resolution Crystal Structure Of A Mg2-Dependent
5-Aminolevulinic Acid Dehydratase
pdb|2WOQ|A Chain A, Porphobilinogen Synthase (Hemb) In Complex With
5-Acetamido- 4-Oxohexanoic Acid (Alaremycin 2)
Length = 337
Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 149/318 (46%), Positives = 210/318 (66%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDVALDP+++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G DGI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V IM+Y+AKYAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRIMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++VKPG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 210/312 (67%), Gaps = 6/312 (1%)
Query: 110 RKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLVQEVAKARD 168
RKSPA+RA F+ET LS + V P+F+ E +D + AMPG R+ +H L +E+ + +
Sbjct: 11 RKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH-LAREIERIAN 69
Query: 169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228
G+ SV+ F TG +A+ ++GLV R + K P++++ +D Y+S G
Sbjct: 70 AGIRSVMTFGISHHT--DETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHG 127
Query: 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288
H G+++E GV ND T+ L KQAV A AGAD ++PS MDG+V AIR ALDA GF+
Sbjct: 128 HCGVLKEHGVD-NDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFKDT 186
Query: 289 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLV 348
+IMSY+ K+ASSFYGPFREA S + GD+K+YQMNP N REA+ E+ DE++GAD L+V
Sbjct: 187 AIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPMNRREAIRESLLDEAQGADCLMV 245
Query: 349 KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 408
KP YLD++R LR++ LPI AYQVSGEY+MIK IDE++V++ESL ++RAGA
Sbjct: 246 KPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGA 305
Query: 409 DIILTYFALQAA 420
D+I +YFAL A
Sbjct: 306 DLIFSYFALDLA 317
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
Length = 323
Score = 275 bits (703), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 209/312 (66%), Gaps = 6/312 (1%)
Query: 110 RKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLVQEVAKARD 168
RKSPA+RA F+ET LS + V P+F+ E +D + AMPG R+ +H L +E+ + +
Sbjct: 11 RKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH-LAREIERIAN 69
Query: 169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228
G+ SV+ F TG +A+ ++GLV R + K P++++ +D Y+S G
Sbjct: 70 AGIRSVMTFGISHHT--DETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHG 127
Query: 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288
H G++ E GV ND T+ L KQAV A AGAD ++PS MDG+V AIR ALDA GF+
Sbjct: 128 HCGVLXEHGVD-NDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFKDT 186
Query: 289 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLV 348
+IMSY+ K+ASSFYGPFREA S + GD+K+YQMNP N REA+ E+ DE++GAD L+V
Sbjct: 187 AIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPMNRREAIRESLLDEAQGADCLMV 245
Query: 349 KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 408
KP YLD++R LR++ LPI AYQVSGEY+MIK IDE++V++ESL ++RAGA
Sbjct: 246 KPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGA 305
Query: 409 DIILTYFALQAA 420
D+I +YFAL A
Sbjct: 306 DLIFSYFALDLA 317
>pdb|1GZG|A Chain A, Complex Of A Mg2-Dependent Porphobilinogen Synthase From
Pseudomonas Aeruginosa (Mutant D139n) With
5-Fluorolevulinic Acid
pdb|1GZG|B Chain B, Complex Of A Mg2-Dependent Porphobilinogen Synthase From
Pseudomonas Aeruginosa (Mutant D139n) With
5-Fluorolevulinic Acid
Length = 337
Score = 274 bits (701), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 210/318 (66%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDVALDP+++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G +GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+AKYAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++VKPG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 274 bits (701), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 209/312 (66%), Gaps = 6/312 (1%)
Query: 110 RKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLVQEVAKARD 168
RKSPA+RA F+ET LS + V P+F+ E +D + AMPG R+ +H L +E+ + +
Sbjct: 11 RKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH-LAREIERIAN 69
Query: 169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228
G+ SV+ F TG +A+ ++GLV R + K P++++ +D Y+S G
Sbjct: 70 AGIRSVMTFGISHHT--DETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHG 127
Query: 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288
H G++ E GV ND T+ L KQAV A AGAD ++PS MDG+V AIR ALDA GF+
Sbjct: 128 HCGVLCEHGVD-NDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFKDT 186
Query: 289 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLV 348
+IMSY+ K+ASSFYGPFREA S + GD+K+YQMNP N REA+ E+ DE++GAD L+V
Sbjct: 187 AIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPMNRREAIRESLLDEAQGADCLMV 245
Query: 349 KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 408
KP YLD++R LR++ LPI AYQVSGEY+MIK IDE++V++ESL ++RAGA
Sbjct: 246 KPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGA 305
Query: 409 DIILTYFALQAA 420
D+I +YFAL A
Sbjct: 306 DLIFSYFALDLA 317
>pdb|2C15|A Chain A, 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Acid Bound
To Porphobilinogen Synthase From Pseudomonas Aeruginosa
pdb|2C15|B Chain B, 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Acid Bound
To Porphobilinogen Synthase From Pseudomonas Aeruginosa
pdb|2C18|A Chain A, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfonyl)-4-Oxo-Pentanoic Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C18|B Chain B, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfonyl)-4-Oxo-Pentanoic Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
Length = 337
Score = 274 bits (700), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 209/318 (65%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDVALDP+++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G DGI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+AKYAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++V PG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVXPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|1W54|A Chain A, Stepwise Introduction Of A Zinc Binding Site Into
Porphobilinogen Synthase From Pseudomonas Aeruginosa
(mutation D139c)
pdb|1W54|B Chain B, Stepwise Introduction Of A Zinc Binding Site Into
Porphobilinogen Synthase From Pseudomonas Aeruginosa
(mutation D139c)
Length = 337
Score = 271 bits (694), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 209/318 (65%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDVALDP+++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+AKYAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++VKPG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|1W56|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D131c)
pdb|1W56|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D131c)
Length = 337
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 208/318 (65%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDV L P+++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCPFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G DGI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+AKYAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++VKPG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|1W5M|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D139c)
pdb|1W5M|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D139c)
Length = 337
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 208/318 (65%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDV LDP+++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLDPFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+AKYAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++VKPG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|1W5N|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations D131c And D139c)
pdb|1W5N|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations D131c And D139c)
Length = 337
Score = 268 bits (684), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 208/318 (65%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDVAL P+++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALCPFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+AKYAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++VKPG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|1W5O|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c And D139c)
pdb|1W5O|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c And D139c)
Length = 337
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/318 (45%), Positives = 207/318 (65%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDV L P+++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCPFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+AKYAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++VKPG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|1W5P|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e)
pdb|1W5P|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e)
Length = 337
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 206/318 (64%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDV L +++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+AKYAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++VKPG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|1W5Q|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e, K229r)
pdb|1W5Q|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e, K229r)
Length = 337
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 143/318 (44%), Positives = 206/318 (64%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDV L +++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+AKYAS++YGPFR+A+ SN G++ TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++VKPG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|2C14|A Chain A, 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C14|B Chain B, 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C16|A Chain A, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfinyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C16|B Chain B, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfinyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C19|A Chain A, 5-(4-Carboxy-2-Oxo-Butylsulfanyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C19|B Chain B, 5-(4-Carboxy-2-Oxo-Butylsulfanyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
Length = 337
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 209/318 (65%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDVALDP+++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G DGI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+A YAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAXYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++VKPG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|2C13|A Chain A, 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen Synthase
From Pseudomonas Aeruginosa
pdb|2C13|B Chain B, 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen Synthase
From Pseudomonas Aeruginosa
Length = 337
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 208/318 (65%), Gaps = 5/318 (1%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKAR 167
NR+ R +E L+ + + P+F+ +G + I +MPG RL L+ E +
Sbjct: 18 NRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLI-EAEEWV 76
Query: 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227
+G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDVALDP+++
Sbjct: 77 ALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTH 136
Query: 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
G DGI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL++ G +
Sbjct: 137 GQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN 196
Query: 288 VSIMSYTAKYASSFYGPFREALD--SNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
V +M+Y+A YAS++YGPFR+A+ SN G+K TYQM+PAN EAL E AD +EGAD+
Sbjct: 197 VRVMAYSAXYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADM 256
Query: 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 405
++V PG+PYLD++R ++D++ P YQVSGEY+M G + V++ESL +R
Sbjct: 257 VMVXPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAM-HMGAIQNGWLAESVILESLTAFKR 315
Query: 406 AGADIILTYFALQAARCL 423
AGAD ILTYFA QAA L
Sbjct: 316 AGADGILTYFAKQAAEQL 333
>pdb|2Z1B|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
pdb|2Z1B|B Chain B, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
pdb|2Z1B|C Chain C, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
pdb|2Z1B|D Chain D, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
Length = 330
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 194/305 (63%), Gaps = 4/305 (1%)
Query: 122 TNLSPANFVYPLFIHEGEEDT-PIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKV 180
+ +S +N +YP+F+ + +D PI ++PG R G L + + + G+ V++F
Sbjct: 24 STVSASNLIYPIFVTDVPDDVQPIASLPGVARYGVNQ-LEEMLRPLVEAGLRCVLIFGVP 82
Query: 181 PDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIM 240
K G A +++ + LL+ +P L++ DV L PY+S GH G++ E+G +
Sbjct: 83 SRVPKDEQGSAADSEDSPTIEAVRLLRKTFPSLLVACDVCLCPYTSHGHCGLLSENGAFL 142
Query: 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF-QHVSIMSYTAKYAS 299
++E+ +L + A++ A+AG VV+PSDMMDGRV AI+AAL G VS+MSY+AK+AS
Sbjct: 143 SEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKAALLKHGLGNRVSVMSYSAKFAS 202
Query: 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIR 359
FYGPFR+A S+P FGD++ YQ+ P AL D EGAD+L+VKPGLPYLD++R
Sbjct: 203 CFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAVARDIQEGADMLMVKPGLPYLDMVR 262
Query: 360 LLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQ 418
++DK+P LP+A YQVSGE++M+ G D + ++E++ RRAGADII+TYFA Q
Sbjct: 263 EVKDKHPELPLAVYQVSGEFAMLWHGAQAGAFDLRTAVLETMTAFRRAGADIIITYFAPQ 322
Query: 419 AARCL 423
+ L
Sbjct: 323 LLKWL 327
>pdb|1E51|A Chain A, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
pdb|1E51|B Chain B, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
Length = 330
Score = 238 bits (606), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 195/315 (61%), Gaps = 5/315 (1%)
Query: 113 PAMRA-SFQETNLSPANFVYPLFIHEGEEDT-PIGAMPGCYRLGWRHGLVQEVAKARDVG 170
P +RA T L+ +N +YP+F+ + +D PI ++PG R G + L + + + G
Sbjct: 14 PLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR-LEEMLRPLVEEG 72
Query: 171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230
+ V++F K G A ++ I LL+ +P+L++ DV L PY+S GH
Sbjct: 73 LRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHC 132
Query: 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF-QHVS 289
G++ E+G +E+ +L + A++ A+AG VV+PSDMMDGRV AI+ AL A G VS
Sbjct: 133 GLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVS 192
Query: 290 IMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVK 349
+MSY+AK+AS FYGPFR+A S+P FGD++ YQ+ P AL D EGAD+L+VK
Sbjct: 193 VMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDRDVREGADMLMVK 252
Query: 350 PGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 408
PG+PYLD++R ++DK+P LP+A Y VSGE++M+ G D + ++E++ RRAGA
Sbjct: 253 PGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGA 312
Query: 409 DIILTYFALQAARCL 423
DII+TY+ Q + L
Sbjct: 313 DIIITYYTPQLLQWL 327
>pdb|1PV8|A Chain A, Crystal Structure Of A Low Activity F12l Mutant Of Human
Porphobilinogen Synthase
pdb|1PV8|B Chain B, Crystal Structure Of A Low Activity F12l Mutant Of Human
Porphobilinogen Synthase
Length = 330
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 195/315 (61%), Gaps = 5/315 (1%)
Query: 113 PAMRA-SFQETNLSPANFVYPLFIHEGEEDT-PIGAMPGCYRLGWRHGLVQEVAKARDVG 170
P +RA T L+ +N +YP+F+ + +D PI ++PG R G + L + + + G
Sbjct: 14 PLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR-LEEMLRPLVEEG 72
Query: 171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230
+ V++F K G A ++ I LL+ +P+L++ DV L PY+S GH
Sbjct: 73 LRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHC 132
Query: 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF-QHVS 289
G++ E+G +E+ +L + A++ A+AG VV+PSDMMDGRV AI+ AL A G VS
Sbjct: 133 GLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVS 192
Query: 290 IMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVK 349
+MSY+AK+AS FYGPFR+A S+P FGD++ YQ+ P AL D EGAD+L+VK
Sbjct: 193 VMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDRDVREGADMLMVK 252
Query: 350 PGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 408
PG+PYLD++R ++DK+P LP+A Y VSGE++M+ G D + ++E++ RRAGA
Sbjct: 253 PGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGA 312
Query: 409 DIILTYFALQAARCL 423
DII+TY+ Q + L
Sbjct: 313 DIIITYYTPQLLQWL 327
>pdb|2Z0I|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculus
pdb|2Z0I|B Chain B, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculus
Length = 330
Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 186/305 (60%), Gaps = 4/305 (1%)
Query: 122 TNLSPANFVYPLFIHEGEEDT-PIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKV 180
+ +S +N +YP+F+ + +D PI ++PG R G L + + + G+ V++F
Sbjct: 24 STVSASNLIYPIFVTDVPDDVQPIASLPGVARYGVNQ-LEEXLRPLVEAGLRCVLIFGVP 82
Query: 181 PDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIM 240
K G A +++ + LL+ +P L++ DV L PY+S GH G++ E+G +
Sbjct: 83 SRVPKDEQGSAADSEDSPTIEAVRLLRKTFPSLLVACDVCLCPYTSHGHCGLLSENGAFL 142
Query: 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF-QHVSIMSYTAKYAS 299
++E+ +L + A++ A+AG VV+PSD DGRV AI+AAL G VS+ SY+AK+AS
Sbjct: 143 SEESRQRLAEVALAYAKAGCQVVAPSDXXDGRVEAIKAALLKHGLGNRVSVXSYSAKFAS 202
Query: 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIR 359
FYGPFR+A S+P FGD++ YQ+ P AL D EGAD L VKPGLPYLD +R
Sbjct: 203 CFYGPFRDAAQSSPAFGDRRCYQLPPGARGLALRAVARDIQEGADXLXVKPGLPYLDXVR 262
Query: 360 LLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQ 418
++DK+P LP+A YQVSGE++ + G D + ++E+ RRAGADII+TYFA Q
Sbjct: 263 EVKDKHPELPLAVYQVSGEFAXLWHGAQAGAFDLRTAVLETXTAFRRAGADIIITYFAPQ 322
Query: 419 AARCL 423
+ L
Sbjct: 323 LLKWL 327
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid
Length = 342
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 180/315 (57%), Gaps = 19/315 (6%)
Query: 113 PAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLG---WRHGLVQEVAKARD 168
P +R E L+ ++PLFI + +D T I ++P R+G + L VAK
Sbjct: 25 PLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYLKPLVAK--- 81
Query: 169 VGVNSVVLF--PKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226
G+ SV+LF P +P K P G A + G V + I +++++P+L I DV L Y+S
Sbjct: 82 -GLRSVILFGVPLIP-GTKDPVGTAADDPAGPVIQGIKFIREKFPELYIICDVCLCEYTS 139
Query: 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ 286
GH G++ +DG I + +V +L AV+ A+AGA V+PSDM+DGR+ I+ L
Sbjct: 140 HGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLA 199
Query: 287 HVS-IMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
H + ++SY AK++ + YGPFR+A S P GD+K YQ+ PA A + D SEGAD
Sbjct: 200 HKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADG 259
Query: 346 LLVKPGLPYLDVIR----LLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 401
++VKP YLD++R + +D LPI AY VSGEY+M+ A ++D + + ES
Sbjct: 260 IIVKPSTFYLDIMRDASEICKD---LPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHT 316
Query: 402 CLRRAGADIILTYFA 416
RAGA +I+TY A
Sbjct: 317 GFLRAGARLIITYLA 331
>pdb|1QNV|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) Complex
pdb|1QML|A Chain A, Hg Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase
pdb|1H7P|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Keto-5-Amino-Hexanoic (Kah) At 1.64 A
Resolution
pdb|1H7R|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Succinylacetone At 2.0 A Resolution.
pdb|1H7N|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid At 1.6 A Resolution
pdb|1OHL|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Putative Cyclic
Reaction Intermediate Complex
pdb|1W31|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase
5-Hydroxylaevulinic Acid Complex
Length = 342
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 179/315 (56%), Gaps = 19/315 (6%)
Query: 113 PAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLG---WRHGLVQEVAKARD 168
P +R E L+ ++PLFI + +D T I ++P R+G + L VAK
Sbjct: 25 PLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYLKPLVAK--- 81
Query: 169 VGVNSVVLF--PKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226
G+ SV+LF P +P K P G A + G V + I +++ +P+L I DV L Y+S
Sbjct: 82 -GLRSVILFGVPLIP-GTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTS 139
Query: 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ 286
GH G++ +DG I + +V +L AV+ A+AGA V+PSDM+DGR+ I+ L
Sbjct: 140 HGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLA 199
Query: 287 HVS-IMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
H + ++SY AK++ + YGPFR+A S P GD+K YQ+ PA A + D SEGAD
Sbjct: 200 HKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADG 259
Query: 346 LLVKPGLPYLDVIR----LLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 401
++VKP YLD++R + +D LPI AY VSGEY+M+ A ++D + + ES
Sbjct: 260 IIVKPSTFYLDIMRDASEICKD---LPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQ 316
Query: 402 CLRRAGADIILTYFA 416
RAGA +I+TY A
Sbjct: 317 GFLRAGARLIITYLA 331
>pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 5-Aminolaevulinic Acid At 1.7 A
Resolution
Length = 341
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 179/315 (56%), Gaps = 19/315 (6%)
Query: 113 PAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLG---WRHGLVQEVAKARD 168
P +R E L+ ++PLFI + +D T I ++P R+G + L VAK
Sbjct: 25 PLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYLKPLVAK--- 81
Query: 169 VGVNSVVLF--PKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226
G+ SV+LF P +P K P G A + G V + I +++ +P+L I DV L Y+S
Sbjct: 82 -GLRSVILFGVPLIP-GTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTS 139
Query: 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ 286
GH G++ +DG I + +V +L AV+ A+AGA V+PSDM+DGR+ I+ L
Sbjct: 140 HGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLA 199
Query: 287 HVS-IMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
H + ++SY AK++ + YGPFR+A S P GD+K YQ+ PA A + D SEGAD
Sbjct: 200 HKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADG 259
Query: 346 LLVKPGLPYLDVIR----LLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 401
++VKP YLD++R + +D LPI AY VSGEY+M+ A ++D + + ES
Sbjct: 260 IIVKPSTFYLDIMRDASEICKD---LPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQ 316
Query: 402 CLRRAGADIILTYFA 416
RAGA +I+TY A
Sbjct: 317 GFLRAGARLIITYLA 331
>pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic
Acid Complex
pdb|1GJP|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Oxosebacic Acid
Length = 340
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 179/315 (56%), Gaps = 19/315 (6%)
Query: 113 PAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLG---WRHGLVQEVAKARD 168
P +R E L+ ++PLFI + +D T I ++P R+G + L VAK
Sbjct: 25 PLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYLKPLVAK--- 81
Query: 169 VGVNSVVLF--PKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226
G+ SV+LF P +P K P G A + G V + I +++ +P+L I DV L Y+S
Sbjct: 82 -GLRSVILFGVPLIP-GTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTS 139
Query: 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ 286
GH G++ +DG I + +V +L AV+ A+AGA V+PSDM+DGR+ I+ L
Sbjct: 140 HGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLA 199
Query: 287 HVS-IMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
H + ++SY AK++ + YGPFR+A S P GD+K YQ+ PA A + D SEGAD
Sbjct: 200 HKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADG 259
Query: 346 LLVKPGLPYLDVIR----LLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 401
++VKP YLD++R + +D LPI AY VSGEY+M+ A ++D + + ES
Sbjct: 260 IIVKPSTFYLDIMRDASEICKD---LPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQ 316
Query: 402 CLRRAGADIILTYFA 416
RAGA +I+TY A
Sbjct: 317 GFLRAGARLIITYLA 331
>pdb|1AW5|A Chain A, 5-Aminolevulinate Dehydratase From Saccharomyces
Cerevisiae
Length = 340
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 19/315 (6%)
Query: 113 PAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLG---WRHGLVQEVAKARD 168
P +R E L+ ++PLFI + +D T I + P R+G + L VAK
Sbjct: 25 PLLRQWQSERQLTKNXLIFPLFISDNPDDFTEIDSAPNINRIGVNRLKDYLKPLVAK--- 81
Query: 169 VGVNSVVLF--PKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226
G+ SV+LF P +P K P G A + G V + I +++++P+L I DV L Y+S
Sbjct: 82 -GLRSVILFGVPLIP-GTKDPVGTAADDPAGPVIQGIRFIREKFPELYIICDVCLCEYTS 139
Query: 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ 286
GH G++ +DG I + +V +L AV+ A+AGA V+PSD +DGR+ I+ L
Sbjct: 140 HGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDXIDGRIRDIKRGLINANLA 199
Query: 287 HVS-IMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345
H + ++SY AK++ + YGP R+A S P GD+K YQ+ PA A + D SEGAD
Sbjct: 200 HKTFVLSYAAKFSGNLYGPARDAACSAPSNGDRKCYQLPPAGRGLARRALERDXSEGADG 259
Query: 346 LLVKPGLPYLDVIR----LLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 401
++VKP YLD++R + +D LPI AY VSGEY+ + A ++D + + ES
Sbjct: 260 IIVKPSTFYLDIVRDASEICKD---LPICAYHVSGEYAXLHAAAEKGVVDLKTIAFESHQ 316
Query: 402 CLRRAGADIILTYFA 416
RAGA +I+TY A
Sbjct: 317 GFLRAGARLIITYLA 331
>pdb|3FK4|A Chain A, Crystal Structure Of Rubisco-Like Protein From Bacillus
Cereus Atcc 14579
pdb|3FK4|B Chain B, Crystal Structure Of Rubisco-Like Protein From Bacillus
Cereus Atcc 14579
Length = 414
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 17/152 (11%)
Query: 266 SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDS-NPRFGDKKTYQMN 324
+ + D +G + D E ++ T + S +E L S +G K Y +N
Sbjct: 160 TQLRDQAIGGVDIVKDDEILFENALTPLTKRIVSG-----KEVLQSVYETYGHKTLYAVN 214
Query: 325 PANYREALVE-AQADESEGADILLVKPGLPYLDVIRLLR--DKYPLPIAAY-QVSGEYSM 380
L E A+ GADILL LDV++ L D+ P+PI A+ VSG YS
Sbjct: 215 LTGRTFDLKENAKRAVQAGADILLFNVFAYGLDVLQSLAEDDEIPVPIMAHPAVSGAYSA 274
Query: 381 IKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412
K G +++ L LR AGAD L
Sbjct: 275 SKLYGV-----SSPLLLGKL--LRYAGADFSL 299
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 312 NPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKP 350
+P F D+KT+ N +E VEA DE E +++ ++P
Sbjct: 102 SPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRP 138
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 312 NPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKP 350
+P F D+KT+ N +E VEA DE E +++ ++P
Sbjct: 102 SPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRP 138
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 312 NPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKP 350
+P F D+KT+ N +E VEA DE E +++ ++P
Sbjct: 102 SPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRP 138
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD--MMDGRVGAI---RA 278
Y + G +G+ ED + + D TV + V R SP+ +DG GA
Sbjct: 82 YGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTAEQSPNADIFLDGLFGAAYPDNT 141
Query: 279 ALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315
A++AE Y + Y + +++ L S+P F
Sbjct: 142 AMEAE---------YGSTYNTVHVNLYKQGLISSPLF 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,492,805
Number of Sequences: 62578
Number of extensions: 452047
Number of successful extensions: 1195
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 32
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)