Query 014237
Match_columns 428
No_of_seqs 212 out of 1056
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0113 HemB Delta-aminolevuli 100.0 5E-160 1E-164 1166.5 32.6 325 100-425 4-329 (330)
2 cd04823 ALAD_PBGS_aspartate_ri 100.0 7E-158 1E-162 1156.7 33.8 319 104-424 1-320 (320)
3 PF00490 ALAD: Delta-aminolevu 100.0 4E-158 8E-163 1160.7 29.5 321 102-423 2-324 (324)
4 PRK09283 delta-aminolevulinic 100.0 2E-156 5E-161 1148.0 33.7 320 101-424 3-323 (323)
5 cd00384 ALAD_PBGS Porphobilino 100.0 2E-156 5E-161 1143.6 33.1 313 107-423 1-314 (314)
6 PRK13384 delta-aminolevulinic 100.0 1E-155 3E-160 1140.7 33.1 315 103-422 7-322 (322)
7 cd04824 eu_ALAD_PBGS_cysteine_ 100.0 1E-153 3E-158 1125.4 33.4 312 111-423 5-320 (320)
8 KOG2794 Delta-aminolevulinic a 100.0 1E-140 2E-145 1019.3 30.0 337 87-427 2-340 (340)
9 TIGR03128 RuMP_HxlA 3-hexulose 97.0 0.016 3.5E-07 53.1 13.2 164 158-413 13-185 (206)
10 PRK07028 bifunctional hexulose 96.9 0.045 9.7E-07 56.5 17.0 167 154-412 14-188 (430)
11 cd08205 RuBisCO_IV_RLP Ribulos 96.8 0.002 4.2E-08 66.0 5.8 109 244-373 144-254 (367)
12 cd00377 ICL_PEPM Members of th 96.8 0.016 3.5E-07 55.9 11.6 190 146-413 12-225 (243)
13 cd08210 RLP_RrRLP Ribulose bis 96.6 0.011 2.3E-07 60.9 9.3 135 242-412 137-282 (364)
14 cd06556 ICL_KPHMT Members of t 96.3 0.049 1.1E-06 53.1 11.4 210 146-422 15-231 (240)
15 cd00945 Aldolase_Class_I Class 96.1 0.18 4E-06 44.4 13.0 102 241-377 11-124 (201)
16 cd00945 Aldolase_Class_I Class 95.7 0.66 1.4E-05 40.9 14.8 152 154-372 11-178 (201)
17 PRK08645 bifunctional homocyst 94.9 1.2 2.6E-05 48.6 16.8 216 158-411 43-267 (612)
18 PLN02489 homocysteine S-methyl 94.9 1 2.3E-05 45.8 15.3 223 158-411 55-313 (335)
19 cd04726 KGPDC_HPS 3-Keto-L-gul 94.8 1.3 2.9E-05 40.2 14.5 163 158-413 14-185 (202)
20 PRK07226 fructose-bisphosphate 94.8 0.94 2E-05 44.1 14.2 70 324-413 158-230 (267)
21 cd04727 pdxS PdxS is a subunit 94.6 2.2 4.8E-05 43.3 16.4 140 160-370 18-198 (283)
22 cd02803 OYE_like_FMN_family Ol 94.4 0.87 1.9E-05 44.7 13.2 96 158-267 142-249 (327)
23 cd00452 KDPG_aldolase KDPG and 94.4 4.1 9E-05 37.6 17.1 156 157-416 16-173 (190)
24 TIGR00343 pyridoxal 5'-phospha 94.3 1.5 3.3E-05 44.5 14.8 140 160-370 20-201 (287)
25 PRK05718 keto-hydroxyglutarate 94.2 2.6 5.6E-05 40.6 15.5 151 158-412 28-181 (212)
26 PRK04180 pyridoxal biosynthesi 93.8 0.54 1.2E-05 47.8 10.6 140 160-370 27-207 (293)
27 cd04729 NanE N-acetylmannosami 93.8 1.1 2.3E-05 42.1 11.9 163 158-413 28-205 (219)
28 PRK07807 inosine 5-monophospha 93.4 0.58 1.3E-05 50.0 10.6 117 158-290 227-358 (479)
29 PRK15063 isocitrate lyase; Pro 93.0 2.3 5E-05 45.4 14.0 107 271-379 206-318 (428)
30 PF02574 S-methyl_trans: Homoc 92.9 0.28 6E-06 48.3 6.8 226 158-411 41-285 (305)
31 PRK13307 bifunctional formalde 92.8 4.2 9.2E-05 42.7 15.5 145 188-413 204-357 (391)
32 PRK11320 prpB 2-methylisocitra 92.7 2.1 4.6E-05 43.2 12.8 168 147-374 21-210 (292)
33 PF03437 BtpA: BtpA family; I 92.6 3.1 6.6E-05 41.4 13.4 174 143-371 10-205 (254)
34 TIGR02319 CPEP_Pphonmut carbox 92.5 1.6 3.5E-05 44.1 11.7 164 147-371 20-206 (294)
35 PRK01130 N-acetylmannosamine-6 92.4 1.8 3.9E-05 40.5 11.1 163 158-413 24-201 (221)
36 TIGR01949 AroFGH_arch predicte 91.9 2.7 5.9E-05 40.6 12.0 59 339-413 166-226 (258)
37 PRK04147 N-acetylneuraminate l 91.7 2.9 6.3E-05 41.1 12.1 109 234-376 16-140 (293)
38 cd06557 KPHMT-like Ketopantoat 91.5 2.6 5.6E-05 41.8 11.5 176 146-372 15-199 (254)
39 TIGR02317 prpB methylisocitrat 91.4 3.6 7.7E-05 41.5 12.6 168 147-374 17-205 (285)
40 PRK09485 mmuM homocysteine met 91.4 7.1 0.00015 39.1 14.6 224 158-411 46-284 (304)
41 cd02932 OYE_YqiM_FMN Old yello 91.0 8.9 0.00019 38.5 14.9 94 158-265 155-260 (336)
42 cd00958 DhnA Class I fructose- 90.8 11 0.00025 35.4 14.7 182 158-413 22-213 (235)
43 cd08601 GDPD_SaGlpQ_like Glyce 90.8 1.7 3.8E-05 41.4 9.3 121 270-424 125-256 (256)
44 PRK14040 oxaloacetate decarbox 90.7 15 0.00031 40.7 17.3 200 133-388 5-223 (593)
45 cd04733 OYE_like_2_FMN Old yel 90.3 5.3 0.00012 40.2 12.8 95 158-266 150-256 (338)
46 PRK07188 nicotinate phosphorib 90.3 1.1 2.4E-05 46.4 8.0 70 198-292 188-285 (352)
47 PRK00311 panB 3-methyl-2-oxobu 90.2 3 6.4E-05 41.6 10.7 166 147-343 83-255 (264)
48 PRK00311 panB 3-methyl-2-oxobu 90.1 2.5 5.5E-05 42.1 10.1 186 146-382 18-216 (264)
49 cd02930 DCR_FMN 2,4-dienoyl-Co 89.9 11 0.00024 38.2 14.7 188 196-392 29-302 (353)
50 TIGR00259 thylakoid_BtpA membr 89.7 8.7 0.00019 38.4 13.5 172 144-371 10-205 (257)
51 cd00408 DHDPS-like Dihydrodipi 89.7 4.1 8.8E-05 39.3 11.0 109 234-376 10-133 (281)
52 PTZ00170 D-ribulose-5-phosphat 89.7 7.2 0.00016 37.5 12.5 169 158-413 20-200 (228)
53 cd00954 NAL N-Acetylneuraminic 89.7 4 8.6E-05 40.1 11.0 119 234-386 13-154 (288)
54 cd06557 KPHMT-like Ketopantoat 89.4 4.2 9.2E-05 40.3 11.0 168 147-343 80-252 (254)
55 PRK07259 dihydroorotate dehydr 89.4 23 0.0005 34.8 17.1 41 354-413 222-262 (301)
56 PRK07534 methionine synthase I 88.9 21 0.00045 36.6 15.9 218 158-411 45-275 (336)
57 PRK08444 hypothetical protein; 88.3 0.94 2E-05 46.5 5.8 231 149-424 76-334 (353)
58 TIGR03249 KdgD 5-dehydro-4-deo 88.1 5.7 0.00012 39.2 11.0 108 234-376 18-140 (296)
59 cd02931 ER_like_FMN Enoate red 88.0 11 0.00024 39.0 13.3 109 159-267 152-273 (382)
60 cd00950 DHDPS Dihydrodipicolin 88.0 8 0.00017 37.5 11.7 118 235-386 14-152 (284)
61 PRK11613 folP dihydropteroate 87.7 2 4.4E-05 43.1 7.7 98 309-415 21-141 (282)
62 TIGR02320 PEP_mutase phosphoen 87.6 13 0.00028 37.5 13.2 124 241-413 90-239 (285)
63 PRK14042 pyruvate carboxylase 87.6 4.1 9E-05 45.0 10.5 257 105-411 54-335 (596)
64 PRK00043 thiE thiamine-phospha 87.3 2.4 5.1E-05 38.7 7.3 53 340-412 122-186 (212)
65 TIGR00674 dapA dihydrodipicoli 87.3 6.8 0.00015 38.3 10.9 119 234-386 11-150 (285)
66 cd02933 OYE_like_FMN Old yello 86.5 4.7 0.0001 41.0 9.6 168 159-368 154-334 (338)
67 cd00739 DHPS DHPS subgroup of 86.4 9.9 0.00021 37.4 11.5 95 315-415 14-128 (257)
68 PLN02428 lipoic acid synthase 85.8 27 0.00059 36.4 14.7 188 112-412 65-280 (349)
69 cd00377 ICL_PEPM Members of th 85.4 4.4 9.5E-05 39.4 8.4 116 158-294 85-203 (243)
70 PRK05927 hypothetical protein; 85.4 1.4 3.1E-05 45.1 5.4 114 148-285 71-199 (350)
71 TIGR01303 IMP_DH_rel_1 IMP deh 85.2 6.5 0.00014 42.2 10.2 174 158-362 225-435 (475)
72 COG1060 ThiH Thiamine biosynth 84.9 1.2 2.5E-05 46.4 4.4 228 149-425 86-348 (370)
73 cd08209 RLP_DK-MTP-1-P-enolase 84.7 2.9 6.4E-05 43.9 7.3 136 243-413 137-284 (391)
74 PF13714 PEP_mutase: Phosphoen 84.6 5 0.00011 39.3 8.4 127 113-281 59-191 (238)
75 TIGR03551 F420_cofH 7,8-dideme 84.6 2.4 5.2E-05 42.7 6.4 57 150-217 67-123 (343)
76 cd04740 DHOD_1B_like Dihydroor 84.6 12 0.00026 36.5 11.1 42 354-414 219-260 (296)
77 TIGR00222 panB 3-methyl-2-oxob 84.4 26 0.00056 35.3 13.4 172 146-372 18-201 (263)
78 PRK12999 pyruvate carboxylase; 84.2 2.2 4.7E-05 50.3 6.7 97 159-280 628-733 (1146)
79 PRK09613 thiH thiamine biosynt 83.6 6.1 0.00013 42.4 9.2 209 150-408 112-378 (469)
80 TIGR02082 metH 5-methyltetrahy 83.0 45 0.00097 40.0 16.6 221 158-411 50-294 (1178)
81 PRK12344 putative alpha-isopro 83.0 14 0.0003 40.1 11.7 199 146-411 18-230 (524)
82 cd08207 RLP_NonPhot Ribulose b 82.8 4.8 0.0001 42.6 8.0 135 243-413 156-300 (406)
83 PRK12331 oxaloacetate decarbox 82.3 76 0.0017 34.1 18.3 223 133-409 4-255 (448)
84 TIGR03332 salvage_mtnW 2,3-dik 82.2 4.6 0.0001 42.8 7.6 138 242-413 151-299 (407)
85 PF13714 PEP_mutase: Phosphoen 82.1 7 0.00015 38.3 8.3 180 165-417 24-222 (238)
86 PRK05458 guanosine 5'-monophos 81.4 5 0.00011 41.2 7.4 50 158-220 97-149 (326)
87 PRK07565 dihydroorotate dehydr 81.4 7 0.00015 39.3 8.3 57 341-413 126-196 (334)
88 TIGR01496 DHPS dihydropteroate 81.4 11 0.00025 37.0 9.5 96 314-415 12-126 (257)
89 TIGR01302 IMP_dehydrog inosine 80.8 13 0.00029 39.2 10.4 48 157-217 223-270 (450)
90 PRK12330 oxaloacetate decarbox 80.7 8.2 0.00018 42.0 8.9 260 106-415 56-343 (499)
91 PRK14041 oxaloacetate decarbox 80.6 90 0.0019 33.8 17.8 212 147-409 16-254 (467)
92 cd08556 GDPD Glycerophosphodie 79.9 10 0.00023 33.3 8.0 112 271-414 76-188 (189)
93 cd08148 RuBisCO_large Ribulose 79.7 6.3 0.00014 41.2 7.5 135 243-413 140-286 (366)
94 TIGR03700 mena_SCO4494 putativ 79.3 4.7 0.0001 40.9 6.3 59 148-217 74-132 (351)
95 TIGR01163 rpe ribulose-phospha 79.1 50 0.0011 30.0 17.5 52 148-209 3-54 (210)
96 TIGR03551 F420_cofH 7,8-dideme 78.8 8.3 0.00018 38.9 7.9 85 317-412 64-156 (343)
97 PRK12331 oxaloacetate decarbox 78.8 12 0.00027 39.9 9.5 227 147-416 87-344 (448)
98 TIGR00875 fsa_talC_mipB fructo 78.8 5.7 0.00012 38.4 6.4 77 245-361 108-192 (213)
99 TIGR00222 panB 3-methyl-2-oxob 78.6 2.7 5.8E-05 42.1 4.3 156 158-343 93-254 (263)
100 PRK09549 mtnW 2,3-diketo-5-met 78.5 7.4 0.00016 41.2 7.7 136 243-413 147-294 (407)
101 TIGR00078 nadC nicotinate-nucl 77.8 2.8 6E-05 41.6 4.1 95 303-423 162-259 (265)
102 PRK08508 biotin synthase; Prov 77.7 24 0.00053 34.7 10.6 59 149-216 35-94 (279)
103 TIGR03326 rubisco_III ribulose 77.6 7.5 0.00016 41.2 7.4 136 243-414 157-305 (412)
104 TIGR01108 oadA oxaloacetate de 77.3 10 0.00022 41.7 8.6 217 156-416 90-336 (582)
105 TIGR02320 PEP_mutase phosphoen 76.7 15 0.00032 37.1 8.8 115 158-291 93-215 (285)
106 PRK09282 pyruvate carboxylase 76.6 27 0.00058 38.7 11.5 219 157-416 96-341 (592)
107 cd04732 HisA HisA. Phosphorib 75.9 17 0.00037 33.9 8.6 53 316-371 19-78 (234)
108 TIGR02321 Pphn_pyruv_hyd phosp 75.7 22 0.00049 35.9 9.9 166 146-370 18-209 (290)
109 TIGR03699 mena_SCO4550 menaqui 75.4 9.2 0.0002 38.2 7.0 84 318-412 67-158 (340)
110 PRK07360 FO synthase subunit 2 75.2 5.9 0.00013 40.6 5.8 57 149-215 87-143 (371)
111 PRK09490 metH B12-dependent me 74.8 1E+02 0.0022 37.4 16.2 220 158-411 65-310 (1229)
112 CHL00040 rbcL ribulose-1,5-bis 74.7 11 0.00023 40.9 7.7 135 243-413 180-328 (475)
113 PF01177 Asp_Glu_race: Asp/Glu 74.6 6.2 0.00013 35.9 5.2 156 203-370 13-205 (216)
114 PRK00865 glutamate racemase; P 74.3 29 0.00062 33.9 10.0 57 202-270 20-78 (261)
115 PF12010 DUF3502: Domain of un 74.0 5 0.00011 35.7 4.3 54 374-427 74-134 (134)
116 PRK08072 nicotinate-nucleotide 74.0 6.9 0.00015 39.3 5.7 126 243-415 135-261 (277)
117 cd06556 ICL_KPHMT Members of t 73.9 28 0.00061 34.2 9.8 123 158-311 90-216 (240)
118 PF01487 DHquinase_I: Type I 3 73.7 10 0.00022 35.7 6.5 90 326-415 7-121 (224)
119 cd04730 NPD_like 2-Nitropropan 73.4 61 0.0013 30.2 11.6 55 340-413 120-184 (236)
120 PLN02274 inosine-5'-monophosph 73.3 29 0.00063 37.6 10.6 113 158-289 248-378 (505)
121 COG5016 Pyruvate/oxaloacetate 73.1 19 0.00041 38.9 8.9 205 151-399 92-326 (472)
122 PRK09490 metH B12-dependent me 72.6 54 0.0012 39.6 13.3 170 242-415 288-488 (1229)
123 PRK06512 thiamine-phosphate py 72.2 14 0.0003 35.7 7.1 53 340-412 129-190 (221)
124 PTZ00314 inosine-5'-monophosph 72.2 39 0.00085 36.5 11.2 47 158-217 241-287 (495)
125 PRK09234 fbiC FO synthase; Rev 72.2 8.2 0.00018 44.3 6.4 59 148-217 552-610 (843)
126 cd00956 Transaldolase_FSA Tran 71.8 11 0.00024 36.1 6.3 71 249-362 112-193 (211)
127 cd00502 DHQase_I Type I 3-dehy 71.5 22 0.00048 33.6 8.3 88 327-416 11-122 (225)
128 cd01573 modD_like ModD; Quinol 71.2 11 0.00023 37.7 6.3 78 321-423 186-266 (272)
129 PLN02424 ketopantoate hydroxym 70.5 60 0.0013 34.0 11.6 136 199-372 83-223 (332)
130 PF00072 Response_reg: Respons 70.5 21 0.00046 28.1 6.8 62 326-390 30-95 (112)
131 PRK08645 bifunctional homocyst 70.3 1.7E+02 0.0038 32.3 15.8 148 244-411 248-413 (612)
132 PRK08445 hypothetical protein; 70.3 13 0.00028 38.0 6.9 60 147-217 67-126 (348)
133 cd08206 RuBisCO_large_I_II_III 70.2 11 0.00025 39.9 6.6 135 243-413 145-293 (414)
134 cd08208 RLP_Photo Ribulose bis 70.1 11 0.00024 40.2 6.5 135 243-413 173-317 (424)
135 COG0269 SgbH 3-hexulose-6-phos 70.0 3.6 7.8E-05 40.4 2.7 143 193-413 39-191 (217)
136 PRK12581 oxaloacetate decarbox 69.7 15 0.00033 39.6 7.5 256 106-411 64-347 (468)
137 PRK12656 fructose-6-phosphate 69.7 6.4 0.00014 38.4 4.3 51 243-294 110-168 (222)
138 PRK12653 fructose-6-phosphate 69.6 16 0.00034 35.6 7.0 76 247-362 112-195 (220)
139 PRK04208 rbcL ribulose bisopho 69.6 13 0.00028 40.2 6.9 135 243-413 173-321 (468)
140 cd00564 TMP_TenI Thiamine mono 69.5 22 0.00047 31.4 7.3 55 339-413 112-177 (196)
141 cd08213 RuBisCO_large_III Ribu 69.4 10 0.00022 40.3 6.0 135 243-413 144-291 (412)
142 PLN02877 alpha-amylase/limit d 69.2 87 0.0019 37.1 13.7 155 127-283 339-579 (970)
143 cd00381 IMPDH IMPDH: The catal 69.2 51 0.0011 33.5 10.7 47 158-217 94-140 (325)
144 PF02548 Pantoate_transf: Keto 68.6 13 0.00029 37.4 6.4 149 251-425 28-194 (261)
145 TIGR02319 CPEP_Pphonmut carbox 67.8 69 0.0015 32.7 11.3 128 113-280 67-200 (294)
146 cd00951 KDGDH 5-dehydro-4-deox 67.5 13 0.00027 36.8 5.9 108 234-376 13-135 (289)
147 TIGR01305 GMP_reduct_1 guanosi 67.5 54 0.0012 34.5 10.6 47 159-218 108-156 (343)
148 PRK12655 fructose-6-phosphate 67.4 14 0.0003 36.0 6.1 79 243-361 108-194 (220)
149 PRK14041 oxaloacetate decarbox 67.4 35 0.00076 36.8 9.6 223 155-416 93-340 (467)
150 PRK13111 trpA tryptophan synth 67.2 76 0.0016 31.5 11.2 109 158-295 27-153 (258)
151 cd04725 OMP_decarboxylase_like 67.1 14 0.00031 35.0 6.0 72 323-412 5-81 (216)
152 cd01571 NAPRTase_B Nicotinate 67.0 15 0.00032 37.2 6.3 64 199-291 170-249 (302)
153 TIGR00262 trpA tryptophan synt 66.6 78 0.0017 31.2 11.1 71 339-411 34-144 (256)
154 PRK06552 keto-hydroxyglutarate 66.6 16 0.00036 35.1 6.4 52 141-215 107-158 (213)
155 cd03174 DRE_TIM_metallolyase D 66.4 1.2E+02 0.0025 28.6 18.5 178 147-388 11-215 (265)
156 TIGR01949 AroFGH_arch predicte 66.3 75 0.0016 30.8 10.9 71 338-417 99-179 (258)
157 PRK14040 oxaloacetate decarbox 65.9 1E+02 0.0022 34.3 13.0 223 149-411 90-336 (593)
158 PRK09282 pyruvate carboxylase 65.9 2.2E+02 0.0049 31.7 18.0 203 133-388 4-222 (592)
159 COG1038 PycA Pyruvate carboxyl 65.7 16 0.00035 42.5 6.9 115 157-296 630-758 (1149)
160 PF00016 RuBisCO_large: Ribulo 65.6 13 0.00027 38.2 5.6 136 243-413 27-175 (309)
161 PF02581 TMP-TENI: Thiamine mo 65.6 26 0.00057 32.0 7.2 62 327-412 104-175 (180)
162 PRK05742 nicotinate-nucleotide 65.3 14 0.0003 37.2 5.8 70 321-416 192-263 (277)
163 PRK13125 trpA tryptophan synth 65.1 21 0.00046 34.4 6.8 61 355-415 63-137 (244)
164 PRK11320 prpB 2-methylisocitra 65.1 1.1E+02 0.0025 31.1 12.2 101 158-281 94-199 (292)
165 cd04729 NanE N-acetylmannosami 64.9 1.1E+02 0.0024 28.7 11.4 100 236-371 20-128 (219)
166 TIGR00126 deoC deoxyribose-pho 64.8 84 0.0018 30.4 10.7 130 240-416 15-156 (211)
167 PRK02412 aroD 3-dehydroquinate 64.7 43 0.00094 32.7 8.9 91 325-415 24-143 (253)
168 cd02801 DUS_like_FMN Dihydrour 64.6 43 0.00093 31.0 8.5 78 320-411 58-155 (231)
169 COG3543 Uncharacterized conser 64.4 7.8 0.00017 35.7 3.5 40 201-244 31-74 (135)
170 cd00429 RPE Ribulose-5-phospha 64.1 1.1E+02 0.0024 27.6 17.0 52 148-210 4-56 (211)
171 KOG2335 tRNA-dihydrouridine sy 63.8 8.6 0.00019 40.4 4.1 77 158-243 156-241 (358)
172 PLN02424 ketopantoate hydroxym 63.2 20 0.00042 37.4 6.5 148 251-424 47-213 (332)
173 PRK13306 ulaD 3-keto-L-gulonat 62.9 30 0.00066 33.1 7.4 55 188-267 34-88 (216)
174 PRK03620 5-dehydro-4-deoxygluc 62.8 17 0.00036 36.2 5.8 116 235-385 21-154 (303)
175 TIGR00423 radical SAM domain p 62.7 20 0.00042 35.7 6.3 57 149-216 32-88 (309)
176 COG0646 MetH Methionine syntha 62.7 14 0.00031 38.1 5.4 161 233-411 40-224 (311)
177 PRK07695 transcriptional regul 62.6 32 0.00069 31.9 7.3 56 340-415 113-180 (201)
178 cd04747 OYE_like_5_FMN Old yel 62.5 2E+02 0.0044 30.0 14.6 32 340-371 246-285 (361)
179 PRK12928 lipoyl synthase; Prov 62.2 54 0.0012 33.0 9.3 139 151-304 85-257 (290)
180 PRK07565 dihydroorotate dehydr 62.1 1.2E+02 0.0026 30.6 11.8 117 131-288 166-298 (334)
181 PRK09234 fbiC FO synthase; Rev 62.1 36 0.00079 39.3 9.0 85 317-413 551-644 (843)
182 TIGR00737 nifR3_yhdG putative 61.7 46 0.001 33.2 8.7 82 319-412 65-165 (319)
183 PRK01261 aroD 3-dehydroquinate 61.7 22 0.00047 34.8 6.3 96 322-419 26-131 (229)
184 PF01136 Peptidase_U32: Peptid 61.4 72 0.0016 29.9 9.5 89 158-293 3-92 (233)
185 cd01568 QPRTase_NadC Quinolina 61.4 31 0.00067 34.2 7.3 70 318-413 181-254 (269)
186 PRK07428 nicotinate-nucleotide 61.2 17 0.00037 36.8 5.6 93 300-418 177-275 (288)
187 cd04724 Tryptophan_synthase_al 61.1 45 0.00097 32.3 8.3 60 353-412 63-134 (242)
188 smart00642 Aamy Alpha-amylase 60.9 43 0.00094 30.7 7.7 68 155-226 18-97 (166)
189 cd04739 DHOD_like Dihydroorota 60.8 31 0.00068 34.9 7.4 56 342-413 125-194 (325)
190 COG2513 PrpB PEP phosphonomuta 60.7 34 0.00073 35.2 7.5 129 114-283 69-201 (289)
191 cd02072 Glm_B12_BD B12 binding 60.7 13 0.00029 33.5 4.3 49 241-292 35-86 (128)
192 cd08211 RuBisCO_large_II Ribul 60.5 33 0.00071 37.0 7.8 136 243-414 170-322 (439)
193 PF04131 NanE: Putative N-acet 60.4 50 0.0011 32.1 8.3 48 159-220 53-100 (192)
194 TIGR02151 IPP_isom_2 isopenten 60.2 47 0.001 33.8 8.6 96 297-413 100-209 (333)
195 TIGR03151 enACPred_II putative 60.0 39 0.00084 34.1 7.9 41 327-371 118-166 (307)
196 cd00958 DhnA Class I fructose- 59.8 82 0.0018 29.7 9.6 69 339-417 86-166 (235)
197 TIGR02313 HpaI-NOT-DapA 2,4-di 59.8 22 0.00047 35.4 6.0 110 234-377 13-138 (294)
198 PF00682 HMGL-like: HMGL-like 59.8 6.4 0.00014 36.9 2.2 83 150-266 131-213 (237)
199 PRK05926 hypothetical protein; 59.7 11 0.00025 39.0 4.2 120 147-286 93-222 (370)
200 cd07940 DRE_TIM_IPMS 2-isoprop 59.7 22 0.00048 34.5 6.0 89 148-268 135-223 (268)
201 PRK09240 thiH thiamine biosynt 59.7 19 0.00041 37.0 5.7 53 151-213 102-154 (371)
202 PLN02334 ribulose-phosphate 3- 59.6 98 0.0021 29.4 10.1 138 248-413 22-201 (229)
203 TIGR03572 WbuZ glycosyl amidat 59.5 1.6E+02 0.0034 27.8 18.6 186 158-413 31-226 (232)
204 TIGR01235 pyruv_carbox pyruvat 59.5 33 0.00071 40.9 8.3 229 151-411 619-870 (1143)
205 PRK02615 thiamine-phosphate py 59.2 30 0.00065 36.0 7.1 53 340-412 258-320 (347)
206 cd08602 GDPD_ScGlpQ1_like Glyc 59.2 50 0.0011 33.3 8.5 52 356-415 257-308 (309)
207 PF02219 MTHFR: Methylenetetra 58.8 38 0.00083 33.4 7.5 115 158-291 86-204 (287)
208 cd07945 DRE_TIM_CMS Leptospira 58.6 19 0.00041 35.9 5.4 79 151-263 142-220 (280)
209 PLN02520 bifunctional 3-dehydr 58.5 54 0.0012 35.6 9.1 92 325-416 31-144 (529)
210 TIGR01740 pyrF orotidine 5'-ph 58.2 28 0.0006 32.9 6.2 73 323-413 5-82 (213)
211 cd08212 RuBisCO_large_I Ribulo 58.2 27 0.00058 37.7 6.7 134 243-413 158-305 (450)
212 PRK09140 2-dehydro-3-deoxy-6-p 58.0 88 0.0019 29.9 9.5 61 158-234 23-89 (206)
213 PRK05096 guanosine 5'-monophos 58.0 39 0.00084 35.5 7.6 67 158-263 108-176 (346)
214 TIGR00423 radical SAM domain p 57.6 44 0.00095 33.2 7.7 83 319-412 32-122 (309)
215 cd02801 DUS_like_FMN Dihydrour 57.6 58 0.0012 30.2 8.1 104 111-220 11-131 (231)
216 TIGR00693 thiE thiamine-phosph 57.5 44 0.00094 30.4 7.1 55 339-413 113-179 (196)
217 TIGR00640 acid_CoA_mut_C methy 57.2 16 0.00034 32.7 4.1 48 242-292 39-89 (132)
218 TIGR02990 ectoine_eutA ectoine 57.2 30 0.00065 33.9 6.4 119 255-384 97-224 (239)
219 TIGR00736 nifR3_rel_arch TIM-b 57.1 27 0.00058 34.3 6.0 55 339-412 158-218 (231)
220 cd04740 DHOD_1B_like Dihydroor 57.0 64 0.0014 31.6 8.6 86 158-269 103-189 (296)
221 cd00423 Pterin_binding Pterin 56.7 27 0.00059 33.9 6.0 87 326-414 21-127 (258)
222 cd04739 DHOD_like Dihydroorota 56.7 1.3E+02 0.0027 30.6 10.9 120 131-288 164-296 (325)
223 cd03174 DRE_TIM_metallolyase D 56.5 20 0.00043 33.8 4.9 86 149-268 137-224 (265)
224 cd00952 CHBPH_aldolase Trans-o 56.4 24 0.00053 35.3 5.8 107 236-376 23-145 (309)
225 COG0685 MetF 5,10-methylenetet 56.2 1.8E+02 0.0038 29.4 11.7 130 141-292 78-208 (291)
226 cd00429 RPE Ribulose-5-phospha 56.0 62 0.0014 29.3 7.9 91 321-414 7-112 (211)
227 TIGR02351 thiH thiazole biosyn 55.8 21 0.00045 36.6 5.3 54 151-214 101-154 (366)
228 PRK05458 guanosine 5'-monophos 55.6 42 0.00092 34.6 7.4 47 329-375 96-149 (326)
229 PLN00191 enolase 55.4 55 0.0012 35.2 8.5 125 273-414 246-395 (457)
230 PRK00668 ndk mulitfunctional n 55.4 15 0.00033 32.6 3.8 46 262-307 7-54 (134)
231 TIGR01334 modD putative molybd 55.0 26 0.00055 35.4 5.6 88 304-414 174-263 (277)
232 CHL00148 orf27 Ycf27; Reviewed 54.5 1.4E+02 0.0029 26.6 9.7 62 327-391 38-102 (240)
233 cd04734 OYE_like_3_FMN Old yel 54.5 71 0.0015 32.6 8.8 94 159-266 143-249 (343)
234 cd01572 QPRTase Quinolinate ph 54.5 41 0.00088 33.5 6.9 67 321-413 185-253 (268)
235 PRK02227 hypothetical protein; 54.5 52 0.0011 32.9 7.6 46 322-371 4-57 (238)
236 PRK06015 keto-hydroxyglutarate 54.4 24 0.00051 34.1 5.1 66 130-217 81-149 (201)
237 PRK13813 orotidine 5'-phosphat 54.2 18 0.00039 33.7 4.2 43 323-368 10-57 (215)
238 cd02811 IDI-2_FMN Isopentenyl- 54.0 64 0.0014 32.7 8.3 92 301-412 102-207 (326)
239 cd04731 HisF The cyclase subun 53.8 2E+02 0.0044 27.3 15.4 160 158-371 28-198 (243)
240 PRK05567 inosine 5'-monophosph 53.5 1E+02 0.0022 32.9 10.1 93 160-292 230-336 (486)
241 PRK01362 putative translaldola 53.4 18 0.0004 35.0 4.2 79 244-362 107-193 (214)
242 TIGR00262 trpA tryptophan synt 52.9 2.4E+02 0.0052 27.8 12.3 109 158-295 25-151 (256)
243 PRK12383 putative mutase; Prov 52.8 25 0.00054 37.4 5.4 75 154-233 229-306 (406)
244 PRK13523 NADPH dehydrogenase N 52.8 1.6E+02 0.0036 30.1 11.1 129 242-391 138-300 (337)
245 PF00478 IMPDH: IMP dehydrogen 52.0 33 0.00072 35.9 6.1 54 339-412 117-175 (352)
246 PRK14541 nucleoside diphosphat 51.9 20 0.00043 32.5 3.9 46 262-307 7-54 (140)
247 PRK07475 hypothetical protein; 51.8 1.2E+02 0.0026 29.5 9.6 125 243-373 62-226 (245)
248 cd01942 ribokinase_group_A Rib 51.7 29 0.00063 32.5 5.2 152 212-378 1-160 (279)
249 PRK03170 dihydrodipicolinate s 51.6 35 0.00076 33.4 5.9 106 235-374 15-135 (292)
250 cd00381 IMPDH IMPDH: The catal 51.5 77 0.0017 32.3 8.4 46 329-374 93-143 (325)
251 COG2197 CitB Response regulato 51.4 1.4E+02 0.0031 28.2 9.7 91 326-424 33-133 (211)
252 TIGR03699 mena_SCO4550 menaqui 51.4 24 0.00051 35.4 4.8 56 150-216 69-124 (340)
253 PRK07094 biotin synthase; Prov 51.3 68 0.0015 31.7 7.9 53 150-214 67-119 (323)
254 cd04735 OYE_like_4_FMN Old yel 51.2 63 0.0014 33.0 7.8 96 159-268 146-257 (353)
255 PRK00748 1-(5-phosphoribosyl)- 51.2 2.1E+02 0.0046 26.7 15.1 32 340-371 157-195 (233)
256 TIGR03550 F420_cofG 7,8-dideme 51.0 51 0.0011 33.1 7.0 115 149-285 31-163 (322)
257 cd00408 DHDPS-like Dihydrodipi 51.0 1E+02 0.0023 29.7 8.9 160 152-372 14-180 (281)
258 PF00128 Alpha-amylase: Alpha 51.0 22 0.00048 32.9 4.2 59 158-222 5-75 (316)
259 PRK13306 ulaD 3-keto-L-gulonat 50.8 32 0.00068 33.0 5.3 72 323-414 10-87 (216)
260 PTZ00314 inosine-5'-monophosph 50.7 36 0.00078 36.8 6.2 64 329-412 240-308 (495)
261 cd07938 DRE_TIM_HMGL 3-hydroxy 50.6 29 0.00064 34.3 5.2 94 160-270 76-173 (274)
262 TIGR00674 dapA dihydrodipicoli 50.6 1.1E+02 0.0024 30.1 9.1 108 153-293 16-130 (285)
263 COG0329 DapA Dihydrodipicolina 50.6 37 0.00079 34.1 5.9 107 236-376 19-140 (299)
264 PRK05096 guanosine 5'-monophos 50.6 38 0.00081 35.6 6.1 57 336-412 116-177 (346)
265 PRK13753 dihydropteroate synth 50.4 63 0.0014 32.8 7.6 97 312-415 11-127 (279)
266 COG0800 Eda 2-keto-3-deoxy-6-p 50.4 93 0.002 30.7 8.4 72 150-263 18-89 (211)
267 PF02574 S-methyl_trans: Homoc 50.4 14 0.0003 36.5 2.9 23 392-414 39-61 (305)
268 PRK13352 thiamine biosynthesis 50.3 69 0.0015 34.7 8.1 101 324-428 72-179 (431)
269 PRK05692 hydroxymethylglutaryl 50.3 32 0.00069 34.4 5.4 91 160-270 82-179 (287)
270 COG2040 MHT1 Homocysteine/sele 50.2 13 0.00028 38.3 2.7 26 388-413 37-62 (300)
271 cd08555 PI-PLCc_GDPD_SF Cataly 49.6 97 0.0021 28.1 8.1 41 355-415 139-179 (179)
272 cd02930 DCR_FMN 2,4-dienoyl-Co 49.4 1.1E+02 0.0024 31.1 9.2 169 159-365 139-323 (353)
273 PRK14545 nucleoside diphosphat 49.3 21 0.00047 32.2 3.7 46 262-307 9-56 (139)
274 PRK14542 nucleoside diphosphat 48.7 25 0.00054 31.8 4.1 95 262-402 7-103 (137)
275 cd02803 OYE_like_FMN_family Ol 48.7 2.8E+02 0.006 27.4 13.6 178 195-412 27-246 (327)
276 cd04726 KGPDC_HPS 3-Keto-L-gul 48.7 1.3E+02 0.0027 27.4 8.7 87 323-412 7-108 (202)
277 TIGR00587 nfo apurinic endonuc 48.6 1.2E+02 0.0025 29.7 8.9 96 152-263 6-105 (274)
278 PRK07226 fructose-bisphosphate 48.6 1E+02 0.0022 30.2 8.6 98 158-281 94-193 (267)
279 PRK11815 tRNA-dihydrouridine s 48.6 93 0.002 31.7 8.5 82 318-412 66-169 (333)
280 COG0176 MipB Transaldolase [Ca 48.2 6.9 0.00015 38.9 0.4 100 192-296 72-181 (239)
281 cd02810 DHOD_DHPD_FMN Dihydroo 48.1 68 0.0015 31.1 7.2 59 341-413 123-195 (289)
282 TIGR03128 RuMP_HxlA 3-hexulose 48.0 1.1E+02 0.0025 28.0 8.4 45 323-370 6-56 (206)
283 TIGR01182 eda Entner-Doudoroff 48.0 2.7E+02 0.0058 27.0 18.2 150 158-412 21-174 (204)
284 PRK07455 keto-hydroxyglutarate 47.7 72 0.0016 29.9 7.0 149 158-411 25-177 (187)
285 TIGR00683 nanA N-acetylneurami 46.8 47 0.001 32.9 6.0 109 234-376 13-138 (290)
286 PRK09310 aroDE bifunctional 3- 46.7 68 0.0015 34.3 7.5 87 325-416 8-112 (477)
287 TIGR00510 lipA lipoate synthas 46.6 52 0.0011 33.4 6.4 172 111-294 30-245 (302)
288 PRK10955 DNA-binding transcrip 46.6 1E+02 0.0023 27.2 7.6 61 327-391 33-96 (232)
289 TIGR02317 prpB methylisocitrat 46.3 2.2E+02 0.0048 28.9 10.7 101 158-280 89-196 (285)
290 PRK05926 hypothetical protein; 46.2 73 0.0016 33.2 7.5 85 316-413 92-185 (370)
291 cd04724 Tryptophan_synthase_al 45.9 93 0.002 30.1 7.7 111 158-294 15-139 (242)
292 PRK10766 DNA-binding transcrip 45.9 1.2E+02 0.0026 26.8 7.8 62 327-391 34-98 (221)
293 TIGR01108 oadA oxaloacetate de 45.8 4.7E+02 0.01 29.2 19.9 192 147-388 12-217 (582)
294 cd00959 DeoC 2-deoxyribose-5-p 45.6 2.2E+02 0.0047 26.7 9.9 97 158-281 70-172 (203)
295 TIGR01501 MthylAspMutase methy 45.5 30 0.00066 31.4 4.1 48 241-291 37-87 (134)
296 PF06838 Met_gamma_lyase: Meth 45.2 25 0.00054 37.6 3.9 29 199-227 177-205 (403)
297 PRK07107 inosine 5-monophospha 45.1 1.1E+02 0.0023 33.4 8.7 99 150-263 173-309 (502)
298 PF00701 DHDPS: Dihydrodipicol 44.9 41 0.0009 32.8 5.2 108 234-375 14-136 (289)
299 COG0167 PyrD Dihydroorotate de 44.8 3.7E+02 0.008 27.9 12.1 118 131-288 162-300 (310)
300 PRK09485 mmuM homocysteine met 44.7 18 0.00038 36.3 2.7 24 390-413 42-65 (304)
301 PRK08999 hypothetical protein; 44.6 76 0.0017 31.1 7.0 63 326-412 234-306 (312)
302 PRK10415 tRNA-dihydrouridine s 44.6 94 0.002 31.5 7.8 33 339-371 159-199 (321)
303 PRK15381 pathogenicity island 44.6 41 0.00088 35.8 5.4 60 158-218 262-332 (408)
304 TIGR01769 GGGP geranylgeranylg 44.6 46 0.001 32.2 5.4 50 322-372 4-59 (205)
305 cd02809 alpha_hydroxyacid_oxid 44.5 90 0.0019 31.0 7.6 48 324-374 127-180 (299)
306 PRK10415 tRNA-dihydrouridine s 44.5 1.3E+02 0.0028 30.5 8.8 81 320-412 68-167 (321)
307 cd07939 DRE_TIM_NifV Streptomy 44.5 43 0.00093 32.4 5.2 87 147-268 130-216 (259)
308 TIGR00284 dihydropteroate synt 44.4 3.9E+02 0.0085 29.4 12.8 145 219-405 138-305 (499)
309 PRK06096 molybdenum transport 44.1 36 0.00078 34.5 4.8 88 304-415 175-265 (284)
310 PRK00230 orotidine 5'-phosphat 44.0 38 0.00083 32.6 4.8 39 323-364 9-52 (230)
311 COG0320 LipA Lipoate synthase 43.8 31 0.00067 35.6 4.2 52 348-411 190-245 (306)
312 TIGR02709 branched_ptb branche 43.8 1.7E+02 0.0037 29.7 9.4 182 156-365 10-233 (271)
313 cd00331 IGPS Indole-3-glycerol 43.5 2.2E+02 0.0047 26.6 9.6 33 339-371 41-77 (217)
314 PRK08508 biotin synthase; Prov 43.4 70 0.0015 31.6 6.6 72 319-412 35-117 (279)
315 TIGR03700 mena_SCO4494 putativ 43.4 1.2E+02 0.0026 31.0 8.4 84 318-412 74-165 (351)
316 PRK07114 keto-hydroxyglutarate 43.2 42 0.0009 32.9 4.9 66 129-217 95-163 (222)
317 cd07943 DRE_TIM_HOA 4-hydroxy- 43.2 43 0.00093 32.5 5.0 76 151-263 136-214 (263)
318 PRK10046 dpiA two-component re 43.2 1.2E+02 0.0027 27.9 7.8 63 326-391 37-103 (225)
319 cd00316 Oxidoreductase_nitroge 42.9 93 0.002 31.2 7.5 52 242-293 131-188 (399)
320 cd07941 DRE_TIM_LeuA3 Desulfob 42.5 55 0.0012 32.2 5.7 82 151-266 146-227 (273)
321 PRK13575 3-dehydroquinate dehy 42.4 1.3E+02 0.0029 29.4 8.2 89 328-416 16-134 (238)
322 TIGR01182 eda Entner-Doudoroff 42.3 38 0.00082 32.7 4.4 71 141-233 99-174 (204)
323 cd08562 GDPD_EcUgpQ_like Glyce 42.2 2.1E+02 0.0046 26.4 9.2 116 264-415 109-228 (229)
324 cd07944 DRE_TIM_HOA_like 4-hyd 41.8 1.8E+02 0.004 28.7 9.1 82 146-232 11-99 (266)
325 PRK11517 transcriptional regul 41.5 1.5E+02 0.0032 26.1 7.7 62 327-391 32-96 (223)
326 cd01945 ribokinase_group_B Rib 41.5 1.7E+02 0.0036 27.6 8.5 109 250-368 41-153 (284)
327 PRK10840 transcriptional regul 41.5 2.7E+02 0.0059 25.2 10.2 76 326-404 36-124 (216)
328 cd01846 fatty_acyltransferase_ 41.3 89 0.0019 29.5 6.7 61 158-219 132-205 (270)
329 PLN02540 methylenetetrahydrofo 41.3 4.3E+02 0.0094 29.7 12.7 122 158-290 74-200 (565)
330 PRK06256 biotin synthase; Vali 41.3 1.6E+02 0.0034 29.4 8.8 67 327-412 92-167 (336)
331 cd04723 HisA_HisF Phosphoribos 41.2 1.5E+02 0.0034 28.4 8.4 80 316-417 19-111 (233)
332 PLN02746 hydroxymethylglutaryl 41.0 46 0.001 34.6 5.1 119 160-298 124-261 (347)
333 PF05582 Peptidase_U57: YabG p 40.8 23 0.0005 36.3 2.8 72 141-237 98-171 (287)
334 PLN02808 alpha-galactosidase 40.8 2.9E+02 0.0063 29.4 10.9 99 166-284 63-177 (386)
335 cd01837 SGNH_plant_lipase_like 40.7 63 0.0014 31.8 5.8 61 158-219 165-242 (315)
336 PRK12999 pyruvate carboxylase; 40.7 7.4E+02 0.016 30.0 19.7 207 114-375 522-742 (1146)
337 PRK06852 aldolase; Validated 40.5 4.4E+02 0.0095 27.3 14.5 212 159-413 19-264 (304)
338 PRK10605 N-ethylmaleimide redu 40.4 4.4E+02 0.0095 27.3 15.7 60 329-391 248-316 (362)
339 KOG1579 Homocysteine S-methylt 40.4 22 0.00047 36.9 2.6 62 338-413 11-72 (317)
340 TIGR01235 pyruv_carbox pyruvat 40.4 1.1E+02 0.0024 36.7 8.5 161 158-355 690-879 (1143)
341 PF00215 OMPdecase: Orotidine 40.4 26 0.00056 33.2 3.0 72 323-412 7-90 (226)
342 TIGR00737 nifR3_yhdG putative 40.4 80 0.0017 31.5 6.5 32 340-371 158-197 (319)
343 PRK01130 N-acetylmannosamine-6 40.0 2.5E+02 0.0054 26.3 9.4 95 320-418 13-130 (221)
344 COG5561 Predicted metal-bindin 40.0 31 0.00068 30.3 3.1 35 336-370 50-94 (101)
345 cd04722 TIM_phosphate_binding 40.0 63 0.0014 27.8 5.1 37 339-375 81-123 (200)
346 cd08579 GDPD_memb_like Glycero 39.9 1.4E+02 0.003 27.8 7.7 110 268-415 109-219 (220)
347 PLN02743 nicotinamidase 39.9 89 0.0019 30.7 6.6 83 165-264 145-235 (239)
348 TIGR01037 pyrD_sub1_fam dihydr 39.8 99 0.0021 30.4 7.0 41 355-414 223-263 (300)
349 PRK13475 ribulose bisphosphate 39.8 93 0.002 33.7 7.2 144 243-414 171-323 (443)
350 PRK00912 ribonuclease P protei 39.8 2.8E+02 0.006 26.5 9.8 97 318-417 58-177 (237)
351 cd08563 GDPD_TtGDE_like Glycer 39.7 3E+02 0.0064 25.8 9.9 112 270-415 117-229 (230)
352 TIGR01303 IMP_DH_rel_1 IMP deh 39.7 54 0.0012 35.4 5.5 54 339-412 234-292 (475)
353 TIGR00977 LeuA_rel 2-isopropyl 39.6 2.8E+02 0.0061 30.4 10.9 149 244-411 21-227 (526)
354 PF04898 Glu_syn_central: Glut 39.5 55 0.0012 33.5 5.3 54 241-294 137-201 (287)
355 TIGR02855 spore_yabG sporulati 39.5 25 0.00055 35.9 2.9 67 146-237 102-170 (283)
356 TIGR01163 rpe ribulose-phospha 39.5 2.6E+02 0.0056 25.4 9.2 88 323-413 8-110 (210)
357 PRK07896 nicotinate-nucleotide 39.4 61 0.0013 33.1 5.5 91 300-413 181-273 (289)
358 TIGR00007 phosphoribosylformim 39.4 1.5E+02 0.0033 27.7 7.9 53 316-371 18-77 (230)
359 TIGR00126 deoC deoxyribose-pho 39.0 2.7E+02 0.0059 27.0 9.6 97 158-281 71-173 (211)
360 cd01537 PBP1_Repressors_Sugar_ 38.9 1.1E+02 0.0024 27.1 6.6 134 162-300 71-220 (264)
361 PRK08185 hypothetical protein; 38.9 41 0.00089 34.0 4.3 73 326-403 149-242 (283)
362 PF01791 DeoC: DeoC/LacD famil 38.8 7.4 0.00016 37.0 -0.9 105 151-264 107-226 (236)
363 PRK06843 inosine 5-monophospha 38.5 97 0.0021 33.1 7.1 47 329-375 152-203 (404)
364 PRK09250 fructose-bisphosphate 38.5 2.2E+02 0.0048 30.1 9.5 135 242-413 145-317 (348)
365 PRK05660 HemN family oxidoredu 38.4 1.9E+02 0.0042 29.7 9.1 102 153-296 140-244 (378)
366 PRK06256 biotin synthase; Vali 38.1 1.2E+02 0.0025 30.3 7.2 54 151-214 88-142 (336)
367 TIGR00007 phosphoribosylformim 38.1 3.4E+02 0.0074 25.4 15.6 120 256-413 91-217 (230)
368 PLN02489 homocysteine S-methyl 38.0 26 0.00057 35.8 2.8 24 390-413 51-74 (335)
369 PRK07107 inosine 5-monophospha 37.9 78 0.0017 34.4 6.4 62 330-411 242-309 (502)
370 PRK15424 propionate catabolism 37.8 89 0.0019 34.3 6.9 115 286-414 15-162 (538)
371 cd00959 DeoC 2-deoxyribose-5-p 37.8 2.4E+02 0.0051 26.5 8.9 130 240-416 14-155 (203)
372 PRK08444 hypothetical protein; 37.8 1E+02 0.0022 32.0 6.9 106 289-412 51-166 (353)
373 PRK05481 lipoyl synthase; Prov 37.5 71 0.0015 31.9 5.7 77 129-214 53-133 (289)
374 PRK07534 methionine synthase I 37.4 28 0.0006 35.8 2.8 24 390-413 41-64 (336)
375 cd00439 Transaldolase Transald 37.4 64 0.0014 31.9 5.3 23 243-265 144-166 (252)
376 cd00953 KDG_aldolase KDG (2-ke 37.3 66 0.0014 31.7 5.3 48 326-375 75-130 (279)
377 PLN02361 alpha-amylase 37.3 1.3E+02 0.0029 31.8 7.8 60 157-223 29-100 (401)
378 PRK05718 keto-hydroxyglutarate 37.2 52 0.0011 31.8 4.5 66 141-228 106-176 (212)
379 cd07944 DRE_TIM_HOA_like 4-hyd 37.1 66 0.0014 31.7 5.3 21 252-272 201-221 (266)
380 TIGR01306 GMP_reduct_2 guanosi 37.1 99 0.0021 32.0 6.7 47 328-374 92-145 (321)
381 PRK07379 coproporphyrinogen II 37.0 84 0.0018 32.7 6.3 98 158-294 152-254 (400)
382 PRK05286 dihydroorotate dehydr 36.9 1.3E+02 0.0028 30.7 7.5 68 333-414 160-245 (344)
383 cd07938 DRE_TIM_HMGL 3-hydroxy 36.8 63 0.0014 32.1 5.1 81 152-266 145-225 (274)
384 PRK10529 DNA-binding transcrip 36.7 1.9E+02 0.0041 25.6 7.7 62 327-391 33-97 (225)
385 PRK12330 oxaloacetate decarbox 36.6 6.2E+02 0.013 27.9 18.0 189 147-388 18-225 (499)
386 PRK10200 putative racemase; Pr 36.3 1.2E+02 0.0026 29.3 6.8 68 355-422 20-96 (230)
387 PF05853 DUF849: Prokaryotic p 36.3 32 0.0007 34.2 3.0 57 153-216 23-79 (272)
388 KOG3111 D-ribulose-5-phosphate 36.2 36 0.00077 33.7 3.2 147 243-413 14-196 (224)
389 PTZ00411 transaldolase-like pr 36.0 49 0.0011 34.4 4.3 77 243-364 165-265 (333)
390 cd00957 Transaldolase_TalAB Tr 36.0 42 0.00091 34.5 3.9 81 243-365 153-254 (313)
391 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.0 2.1E+02 0.0046 28.2 8.6 93 147-271 82-174 (275)
392 TIGR01921 DAP-DH diaminopimela 35.7 60 0.0013 33.6 4.9 84 249-336 74-182 (324)
393 PRK12346 transaldolase A; Prov 35.6 51 0.0011 34.1 4.4 21 245-265 156-176 (316)
394 PRK08649 inosine 5-monophospha 35.5 1.5E+02 0.0032 31.1 7.8 44 324-371 139-192 (368)
395 cd03313 enolase Enolase: Enola 35.4 1.6E+02 0.0034 31.1 8.0 130 271-415 214-364 (408)
396 cd03322 rpsA The starvation se 35.3 3.7E+02 0.0081 27.4 10.5 112 158-291 129-269 (361)
397 PRK15108 biotin synthase; Prov 35.3 2E+02 0.0043 29.5 8.6 69 319-410 72-149 (345)
398 PF04309 G3P_antiterm: Glycero 35.2 21 0.00047 33.9 1.5 54 341-414 116-169 (175)
399 TIGR00035 asp_race aspartate r 35.1 44 0.00095 31.8 3.6 62 309-371 39-103 (229)
400 cd08612 GDPD_GDE4 Glycerophosp 35.1 84 0.0018 31.2 5.7 48 356-424 252-299 (300)
401 PRK00077 eno enolase; Provisio 35.0 1.7E+02 0.0037 30.9 8.3 126 271-413 217-362 (425)
402 PRK08195 4-hyroxy-2-oxovalerat 34.9 1.1E+02 0.0023 31.5 6.5 81 151-265 139-220 (337)
403 TIGR01890 N-Ac-Glu-synth amino 34.8 1.1E+02 0.0024 31.9 6.8 104 160-294 150-258 (429)
404 cd06533 Glyco_transf_WecG_TagA 34.8 1.7E+02 0.0037 26.8 7.3 44 159-217 34-77 (171)
405 PRK08255 salicylyl-CoA 5-hydro 34.5 2E+02 0.0044 32.5 9.1 95 159-267 553-659 (765)
406 TIGR00067 glut_race glutamate 34.4 4.5E+02 0.0099 25.7 12.9 51 202-264 13-66 (251)
407 cd02940 DHPD_FMN Dihydropyrimi 34.4 1.8E+02 0.004 28.9 8.0 66 331-412 114-198 (299)
408 cd08565 GDPD_pAtGDE_like Glyce 34.3 76 0.0017 30.3 5.1 55 340-416 175-231 (235)
409 PF04551 GcpE: GcpE protein; 34.3 34 0.00073 36.1 2.9 47 245-292 30-79 (359)
410 PRK15418 transcriptional regul 34.2 30 0.00065 35.1 2.5 137 124-292 166-306 (318)
411 COG3010 NanE Putative N-acetyl 33.9 1.9E+02 0.0041 29.0 7.7 104 231-371 71-185 (229)
412 COG1794 RacX Aspartate racemas 33.7 62 0.0013 32.4 4.4 62 241-302 57-134 (230)
413 PLN02417 dihydrodipicolinate s 33.7 94 0.002 30.6 5.8 107 234-376 14-135 (280)
414 PRK10336 DNA-binding transcrip 33.5 2.4E+02 0.0051 24.6 7.7 62 327-391 32-97 (219)
415 cd08561 GDPD_cytoplasmic_ScUgp 33.3 84 0.0018 29.9 5.2 48 355-423 202-249 (249)
416 cd06268 PBP1_ABC_transporter_L 33.3 1.9E+02 0.0041 26.1 7.2 94 285-381 135-231 (298)
417 PRK10550 tRNA-dihydrouridine s 33.2 1.6E+02 0.0034 30.0 7.3 33 339-371 158-199 (312)
418 TIGR00190 thiC thiamine biosyn 33.2 2.8E+02 0.0061 30.2 9.4 98 324-428 72-176 (423)
419 PRK00694 4-hydroxy-3-methylbut 32.6 46 0.001 37.3 3.7 51 238-293 41-94 (606)
420 PRK13305 sgbH 3-keto-L-gulonat 32.5 74 0.0016 30.9 4.7 46 323-371 10-61 (218)
421 cd08560 GDPD_EcGlpQ_like_1 Gly 32.5 3E+02 0.0066 28.7 9.4 58 354-416 280-347 (356)
422 PRK05848 nicotinate-nucleotide 32.5 2.4E+02 0.0051 28.5 8.4 64 197-290 166-232 (273)
423 TIGR01387 cztR_silR_copR heavy 32.4 2.5E+02 0.0054 24.4 7.6 62 327-391 30-95 (218)
424 PF09370 TIM-br_sig_trns: TIM- 32.3 50 0.0011 33.6 3.6 72 194-265 63-176 (268)
425 PRK06552 keto-hydroxyglutarate 32.2 1.3E+02 0.0029 28.9 6.4 151 158-412 26-181 (213)
426 TIGR00035 asp_race aspartate r 32.1 1.5E+02 0.0033 28.2 6.7 47 366-412 34-80 (229)
427 PRK04147 N-acetylneuraminate l 32.1 3.3E+02 0.0071 26.9 9.2 105 158-294 25-137 (293)
428 TIGR00874 talAB transaldolase. 32.1 61 0.0013 33.5 4.3 23 243-265 153-175 (317)
429 TIGR00676 fadh2 5,10-methylene 32.0 5.1E+02 0.011 25.6 13.0 108 158-285 74-184 (272)
430 TIGR01696 deoB phosphopentomut 32.0 99 0.0021 32.8 5.8 78 153-233 210-290 (381)
431 PRK09432 metF 5,10-methylenete 31.9 5.5E+02 0.012 26.0 11.6 117 144-285 86-203 (296)
432 PRK07729 glyceraldehyde-3-phos 31.9 25 0.00053 36.7 1.4 56 271-327 11-82 (343)
433 cd01979 Pchlide_reductase_N Pc 31.9 4.6E+02 0.0099 27.2 10.6 53 241-293 137-189 (396)
434 PF09505 Dimeth_Pyl: Dimethyla 31.7 27 0.00059 37.0 1.7 73 185-265 210-285 (466)
435 cd06314 PBP1_tmGBP Periplasmic 31.7 4.2E+02 0.0091 24.5 10.2 103 159-285 44-151 (271)
436 PRK10710 DNA-binding transcrip 31.4 2.6E+02 0.0056 24.9 7.7 62 327-391 42-106 (240)
437 cd02810 DHOD_DHPD_FMN Dihydroo 31.4 2.8E+02 0.0061 26.9 8.5 88 158-269 112-199 (289)
438 PF13653 GDPD_2: Glycerophosph 31.2 45 0.00098 23.4 2.2 20 397-416 10-29 (30)
439 PRK14017 galactonate dehydrata 31.2 5.8E+02 0.013 26.2 11.1 128 158-294 127-286 (382)
440 PF01884 PcrB: PcrB family; I 31.2 74 0.0016 31.5 4.5 47 323-372 14-65 (230)
441 PRK05848 nicotinate-nucleotide 31.1 89 0.0019 31.5 5.2 132 241-417 127-260 (273)
442 PRK10161 transcriptional regul 31.1 3.8E+02 0.0082 23.8 9.6 76 327-405 34-121 (229)
443 TIGR01302 IMP_dehydrog inosine 31.0 1.5E+02 0.0032 31.5 7.0 62 330-411 224-290 (450)
444 cd07947 DRE_TIM_Re_CS Clostrid 31.0 1.7E+02 0.0036 29.4 7.0 100 148-270 67-174 (279)
445 PRK10499 PTS system N,N'-diace 30.8 1E+02 0.0022 26.6 4.8 58 340-409 48-106 (106)
446 PRK09441 cytoplasmic alpha-amy 30.6 1.5E+02 0.0032 31.4 7.0 62 158-223 23-105 (479)
447 PRK06245 cofG FO synthase subu 30.6 2E+02 0.0043 28.8 7.6 32 146-178 33-65 (336)
448 cd00950 DHDPS Dihydrodipicolin 30.6 2.8E+02 0.006 27.0 8.3 109 152-293 17-132 (284)
449 PLN02925 4-hydroxy-3-methylbut 30.5 54 0.0012 37.6 3.8 46 246-292 110-158 (733)
450 cd01539 PBP1_GGBP Periplasmic 30.4 4.9E+02 0.011 24.9 11.0 106 159-285 46-170 (303)
451 PRK07360 FO synthase subunit 2 30.4 1.9E+02 0.0042 29.8 7.6 95 300-412 74-178 (371)
452 PRK08195 4-hyroxy-2-oxovalerat 30.4 1.6E+02 0.0035 30.2 7.0 111 160-303 91-214 (337)
453 PRK11475 DNA-binding transcrip 30.2 2.1E+02 0.0046 27.1 7.3 78 325-405 23-111 (207)
454 PRK08318 dihydropyrimidine deh 30.2 1.5E+02 0.0032 30.9 6.8 44 353-412 155-198 (420)
455 PRK08318 dihydropyrimidine deh 30.2 3.6E+02 0.0078 28.1 9.6 105 159-288 182-312 (420)
456 PF01964 ThiC: ThiC family; I 30.1 1.3E+02 0.0027 32.6 6.3 95 327-427 74-174 (420)
457 PHA03386 P10 fibrous body prot 29.9 54 0.0012 28.7 3.0 36 72-110 57-93 (94)
458 TIGR00289 conserved hypothetic 29.7 1.1E+02 0.0023 30.1 5.3 45 355-413 47-91 (222)
459 PRK09140 2-dehydro-3-deoxy-6-p 29.7 1.9E+02 0.004 27.7 6.8 63 326-412 112-177 (206)
460 TIGR02403 trehalose_treC alpha 29.6 1.8E+02 0.0039 31.6 7.5 61 158-224 28-100 (543)
461 PF14681 UPRTase: Uracil phosp 29.6 89 0.0019 29.7 4.7 49 158-224 136-186 (207)
462 PRK05581 ribulose-phosphate 3- 29.6 2.2E+02 0.0048 26.2 7.2 91 321-414 11-116 (220)
463 TIGR01093 aroD 3-dehydroquinat 29.5 3.9E+02 0.0084 25.5 9.0 89 326-415 9-126 (228)
464 PLN02746 hydroxymethylglutaryl 29.5 1E+02 0.0023 32.1 5.5 15 252-266 259-273 (347)
465 TIGR01304 IMP_DH_rel_2 IMP deh 29.5 1.9E+02 0.0042 30.4 7.5 42 326-371 142-193 (369)
466 TIGR01370 cysRS possible cyste 29.5 6.6E+02 0.014 26.1 11.2 123 158-285 148-298 (315)
467 PRK10933 trehalose-6-phosphate 29.4 2E+02 0.0042 31.6 7.8 60 158-223 34-105 (551)
468 cd08573 GDPD_GDE1 Glycerophosp 29.4 94 0.002 30.2 4.9 53 340-414 203-256 (258)
469 PF02679 ComA: (2R)-phospho-3- 29.2 50 0.0011 33.0 3.0 77 158-263 85-164 (244)
470 cd04747 OYE_like_5_FMN Old yel 29.2 3.5E+02 0.0075 28.2 9.2 100 158-267 145-256 (361)
471 PRK12309 transaldolase/EF-hand 29.2 72 0.0016 33.8 4.3 23 243-265 159-181 (391)
472 cd06325 PBP1_ABC_uncharacteriz 29.1 93 0.002 28.6 4.6 38 338-375 180-220 (281)
473 PRK08255 salicylyl-CoA 5-hydro 29.0 4.4E+02 0.0096 29.9 10.6 44 328-371 637-692 (765)
474 PRK11815 tRNA-dihydrouridine s 28.9 1.9E+02 0.004 29.5 7.1 91 158-266 78-171 (333)
475 cd06359 PBP1_Nba_like Type I p 28.8 2.3E+02 0.005 27.4 7.5 103 278-385 127-233 (333)
476 TIGR01091 upp uracil phosphori 28.8 1.6E+02 0.0034 28.0 6.2 49 158-224 137-185 (207)
477 cd04734 OYE_like_3_FMN Old yel 28.8 1.6E+02 0.0034 30.1 6.5 22 242-263 137-158 (343)
478 PRK14042 pyruvate carboxylase 28.7 2.1E+02 0.0046 32.0 8.0 206 151-409 21-255 (596)
479 PRK05437 isopentenyl pyrophosp 28.7 2.4E+02 0.0051 29.2 7.9 88 305-412 114-215 (352)
480 PRK08385 nicotinate-nucleotide 28.7 64 0.0014 32.7 3.7 90 300-413 165-258 (278)
481 cd04727 pdxS PdxS is a subunit 28.6 2E+02 0.0044 29.6 7.2 70 319-411 9-91 (283)
482 PRK02048 4-hydroxy-3-methylbut 28.6 62 0.0013 36.4 3.9 50 238-292 37-89 (611)
483 PF00218 IGPS: Indole-3-glycer 28.5 1.2E+02 0.0026 30.3 5.5 62 333-413 71-137 (254)
484 cd08609 GDPD_GDE3 Glycerophosp 28.5 1.6E+02 0.0034 30.1 6.5 63 341-424 221-283 (315)
485 PRK09542 manB phosphomannomuta 28.3 2.9E+02 0.0064 29.0 8.6 87 168-267 186-277 (445)
486 PLN02389 biotin synthase 28.3 1.6E+02 0.0035 30.8 6.7 85 145-263 108-192 (379)
487 TIGR00284 dihydropteroate synt 28.2 1.5E+02 0.0032 32.5 6.6 84 329-414 165-258 (499)
488 TIGR00109 hemH ferrochelatase. 28.2 59 0.0013 32.9 3.4 30 152-182 100-129 (322)
489 cd06333 PBP1_ABC-type_HAAT_lik 28.2 3E+02 0.0066 26.1 8.0 50 340-389 186-239 (312)
490 TIGR01859 fruc_bis_ald_ fructo 28.0 1.2E+02 0.0025 30.5 5.4 86 160-266 87-173 (282)
491 PRK13307 bifunctional formalde 27.9 1.1E+02 0.0023 32.6 5.3 161 209-412 103-281 (391)
492 KOG2550 IMP dehydrogenase/GMP 27.9 1E+02 0.0022 33.7 5.2 46 159-217 252-297 (503)
493 PRK00748 1-(5-phosphoribosyl)- 27.9 4.2E+02 0.009 24.7 8.8 42 327-371 31-79 (233)
494 PLN03116 ferredoxin--NADP+ red 27.8 6.2E+02 0.013 25.2 10.5 107 159-285 171-287 (307)
495 PRK13585 1-(5-phosphoribosyl)- 27.8 5.2E+02 0.011 24.3 20.3 180 158-413 33-221 (241)
496 PF01081 Aldolase: KDPG and KH 27.7 45 0.00097 32.0 2.3 54 142-217 100-153 (196)
497 PRK09958 DNA-binding transcrip 27.7 4E+02 0.0087 23.0 9.4 78 325-405 31-118 (204)
498 PF01076 Mob_Pre: Plasmid reco 27.7 74 0.0016 30.0 3.7 39 196-234 101-140 (196)
499 TIGR00742 yjbN tRNA dihydrouri 27.7 2.3E+02 0.0049 29.0 7.5 33 339-371 151-200 (318)
500 PRK06843 inosine 5-monophospha 27.6 5.6E+02 0.012 27.5 10.5 116 158-289 153-283 (404)
No 1
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=100.00 E-value=5.2e-160 Score=1166.46 Aligned_cols=325 Identities=55% Similarity=0.906 Sum_probs=317.6
Q ss_pred CCCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEee
Q 014237 100 LPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP 178 (428)
Q Consensus 100 ~~~~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~-~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFg 178 (428)
+.+.+||||+|+++++|+||+||+|+++||||||||.||++ +++|+|||||||||+| .|++++++++++||++|+|||
T Consensus 4 ~~~~~R~RRlRk~~~~R~lv~Et~L~~~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d-~l~~~~~~~~~lGi~av~LFg 82 (330)
T COG0113 4 TFPFRRPRRLRKSPALRRLVRETRLTPNDLIYPIFVVEGENIKEEIPSMPGVYRYSLD-RLVEEAEELVDLGIPAVILFG 82 (330)
T ss_pred cchhhhhhhccCCHHHHHHHHhcCCCHHHeeEeEEEecCCCCccccCCCCCceeccHH-HHHHHHHHHHhcCCCEEEEeC
Confidence 34568999999999999999999999999999999999986 7999999999999997 699999999999999999999
Q ss_pred cCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc
Q 014237 179 KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA 258 (428)
Q Consensus 179 vi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~A 258 (428)
++++++||+.||+|||+||+||||+|.||+.|||++|||||||||||+||||||++++|+|+||+||++|+||||+||+|
T Consensus 83 vp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeA 162 (330)
T COG0113 83 VPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEA 162 (330)
T ss_pred CCcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHc
Confidence 86556899999999999999999999999999999999999999999999999998777999999999999999999999
Q ss_pred CCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhc
Q 014237 259 GADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQAD 338 (428)
Q Consensus 259 GADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lD 338 (428)
|||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|
T Consensus 163 GAdivAPSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD 242 (330)
T COG0113 163 GADIVAPSDMMDGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELD 242 (330)
T ss_pred CCCeecccccccchHHHHHHHHHHcCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHH
Q 014237 339 ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQ 418 (428)
Q Consensus 339 i~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e 418 (428)
++||||||||||||+|||||+++|++|++|++||||||||||||||+++||||++++++|||+||||||||+||||||+|
T Consensus 243 ~~EGAD~lMVKPal~YLDIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTYfA~e 322 (330)
T COG0113 243 IEEGADILMVKPALPYLDIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITYFAKE 322 (330)
T ss_pred HhcCCcEEEEcCCchHHHHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEEEeecHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 014237 419 AARCLCG 425 (428)
Q Consensus 419 ~a~wL~~ 425 (428)
+|+||++
T Consensus 323 ~a~~L~~ 329 (330)
T COG0113 323 VAEWLKE 329 (330)
T ss_pred HHHHhhc
Confidence 9999975
No 2
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=100.00 E-value=6.7e-158 Score=1156.69 Aligned_cols=319 Identities=61% Similarity=0.990 Sum_probs=313.4
Q ss_pred CCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCC
Q 014237 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPD 182 (428)
Q Consensus 104 ~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~-~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~ 182 (428)
+||||||+|+++|+||+||+|+++||||||||+||.+ ++||+|||||||||+| .+++++++++++||++|+|||++|+
T Consensus 1 ~R~RRlR~~~~~R~lv~Et~l~~~dlI~PlFv~e~~~~~~~I~smPg~~r~s~d-~l~~~v~~~~~~Gi~~v~lFgv~~~ 79 (320)
T cd04823 1 TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSID-ELLKEAEEAVDLGIPAVALFPVTPP 79 (320)
T ss_pred CCCcccCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHcCCCEEEEecCCCc
Confidence 5999999999999999999999999999999999985 7899999999999997 6999999999999999999998887
Q ss_pred CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 014237 183 ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV 262 (428)
Q Consensus 183 ~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADi 262 (428)
++||+.||+|||+||+||||||.||++||||+|||||||||||+||||||++ +|.||||+||++|++|||+||+|||||
T Consensus 80 ~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~-~~~idND~Tl~~L~~~Avs~A~AGADi 158 (320)
T cd04823 80 ELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVR-DGGILNDETVEVLCKQALVQAEAGADI 158 (320)
T ss_pred ccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCcCHHHHHHHHHHHHHHHHhCCCE
Confidence 7899999999999999999999999999999999999999999999999996 567999999999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcC
Q 014237 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG 342 (428)
Q Consensus 263 VAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EG 342 (428)
|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|++||
T Consensus 159 VAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EG 238 (320)
T cd04823 159 VAPSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEG 238 (320)
T ss_pred EEcccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHH
Q 014237 343 ADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARC 422 (428)
Q Consensus 343 ADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~a~w 422 (428)
||||||||||+|||||+++|++|++||+||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+|+|
T Consensus 239 AD~lMVKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~ikRAGAd~IiTY~A~~~a~w 318 (320)
T cd04823 239 ADMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYFAKEAAEW 318 (320)
T ss_pred CCEEEEcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEeeccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh
Q 014237 423 LC 424 (428)
Q Consensus 423 L~ 424 (428)
|+
T Consensus 319 l~ 320 (320)
T cd04823 319 LR 320 (320)
T ss_pred hC
Confidence 94
No 3
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=100.00 E-value=3.9e-158 Score=1160.70 Aligned_cols=321 Identities=59% Similarity=0.972 Sum_probs=295.8
Q ss_pred CCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecC
Q 014237 102 LSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKV 180 (428)
Q Consensus 102 ~~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~-~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi 180 (428)
+.+|+||+|+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .+++++++++++||++|+|||+|
T Consensus 2 p~~R~RRlR~~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~~~I~smPg~~r~sid-~l~~~v~~~~~~GI~~v~lFgvi 80 (324)
T PF00490_consen 2 PNTRPRRLRKNPALRDLVRETRLSPSDLIYPLFVVEGENEKEPISSMPGVYRYSID-SLVKEVEEAVDLGIRAVILFGVI 80 (324)
T ss_dssp TSS-GGGGSSSHHHHHHHCST-B-GGGEEEEEEEESSSSSEEEETTSTTEEEEEHH-HHHHHHHHHHHTT--EEEEEEE-
T ss_pred CCccCCCCCCCHHHHHHHhcCCCCHHHeEEEEEEecCCCcceeccCCCCeeeeCHH-HHHHHHHHHHHCCCCEEEEEeeC
Confidence 357999999999999999999999999999999999997 7899999999999997 69999999999999999999999
Q ss_pred CCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceee-cCCCccccHHHHHHHHHHHHHHHHcC
Q 014237 181 PDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIV-REDGVIMNDETVHQLCKQAVSQARAG 259 (428)
Q Consensus 181 ~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil-~~~g~IdND~Tl~~Lak~Als~A~AG 259 (428)
++++||+.||+|||+||++|||||.||++||||+|||||||||||+||||||+ +++|+||||+||++|+||||+||+||
T Consensus 81 ~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~~g~idND~Tl~~Lak~Al~~A~AG 160 (324)
T PF00490_consen 81 DPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCGILDDEDGEIDNDETLERLAKQALSHAEAG 160 (324)
T ss_dssp SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSSEB-CTTSSBEHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccccccCCCceEEEECCCCeEecHHHHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999999999999999999999999999 57999999999999999999999999
Q ss_pred CCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhch
Q 014237 260 ADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADE 339 (428)
Q Consensus 260 ADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi 339 (428)
||||||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|+
T Consensus 161 ADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~ 240 (324)
T PF00490_consen 161 ADIVAPSDMMDGRVGAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDI 240 (324)
T ss_dssp -SEEEE-S--TTHHHHHHHHHHHTTCTTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHH
T ss_pred CCeeccccccCCHHHHHHHHHHhCCCCCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHH
Q 014237 340 SEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQA 419 (428)
Q Consensus 340 ~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~ 419 (428)
+||||||||||||+|||||+++|++|++||+||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+
T Consensus 241 ~EGAD~lMVKPal~YLDIi~~~k~~~~~P~~aYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~ 320 (324)
T PF00490_consen 241 EEGADILMVKPALPYLDIIRRVKERFDLPVAAYQVSGEYAMIKAAAQNGWIDEKRVVLESLLSIKRAGADIIITYFAKEA 320 (324)
T ss_dssp HTT-SEEEEESSGGGHHHHHHHHHHCTS-EEEEETHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHT-SEEEETTHHHH
T ss_pred hhCCCEEEeecchhHHHHHHHHHHhcCCCEEEEEehHHHHHHHHHHHCCCcchhhHHHHHHHHHHHcCCCEEEeecHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 014237 420 ARCL 423 (428)
Q Consensus 420 a~wL 423 (428)
|+||
T Consensus 321 a~~L 324 (324)
T PF00490_consen 321 AKWL 324 (324)
T ss_dssp HHHT
T ss_pred HhhC
Confidence 9998
No 4
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=100.00 E-value=2.1e-156 Score=1148.00 Aligned_cols=320 Identities=58% Similarity=0.925 Sum_probs=313.7
Q ss_pred CCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeec
Q 014237 101 PLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK 179 (428)
Q Consensus 101 ~~~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~-~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgv 179 (428)
.+.+|+||||+|+++|+|++||+|+++||||||||+||.+ ++||+|||||||||+| ++++++++++++||++|+|||+
T Consensus 3 ~~~~R~RRlR~~~~~R~lv~Et~l~~~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d-~l~~~v~~~~~~Gi~av~LFgv 81 (323)
T PRK09283 3 FPFTRPRRLRKTAALRRLVRETRLTPNDLIYPLFVVEGENEREEIPSMPGVYRLSID-LLVKEAEEAVELGIPAVALFGV 81 (323)
T ss_pred CcCcCCcccCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEeCc
Confidence 3568999999999999999999999999999999999986 7999999999999997 6999999999999999999997
Q ss_pred CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC
Q 014237 180 VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG 259 (428)
Q Consensus 180 i~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AG 259 (428)
| +.||+.||+|||+||++|||||.||++|||++|||||||||||+||||||++ +|+||||+||++|++|||+||+||
T Consensus 82 -~-~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~-~g~idND~Tl~~L~~~Al~~A~AG 158 (323)
T PRK09283 82 -P-ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILE-DGYVDNDETLELLAKQALSQAEAG 158 (323)
T ss_pred -C-CCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceeccc-CCcCcCHHHHHHHHHHHHHHHHhC
Confidence 6 5799999999999999999999999999999999999999999999999997 499999999999999999999999
Q ss_pred CCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhch
Q 014237 260 ADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADE 339 (428)
Q Consensus 260 ADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi 339 (428)
||||||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|+
T Consensus 159 aDiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~ 238 (323)
T PRK09283 159 ADIVAPSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDI 238 (323)
T ss_pred CCEEEcccccccHHHHHHHHHHHCCCCCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHH
Q 014237 340 SEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQA 419 (428)
Q Consensus 340 ~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~ 419 (428)
+||||||||||||+|||||+++|++|++||+||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+
T Consensus 239 ~EGAD~lMVKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D~~~~~~Esl~~~kRAGAd~IiTYfA~~~ 318 (323)
T PRK09283 239 EEGADMVMVKPALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEERVVLESLLSIKRAGADGILTYFAKDA 318 (323)
T ss_pred HhCCCEEEEcCCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 014237 420 ARCLC 424 (428)
Q Consensus 420 a~wL~ 424 (428)
|+||+
T Consensus 319 a~~L~ 323 (323)
T PRK09283 319 ARWLR 323 (323)
T ss_pred HHhhC
Confidence 99995
No 5
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=100.00 E-value=2.2e-156 Score=1143.63 Aligned_cols=313 Identities=57% Similarity=0.925 Sum_probs=308.2
Q ss_pred CCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCC
Q 014237 107 RRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALK 185 (428)
Q Consensus 107 RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~-~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~K 185 (428)
||||+|+++|+|++||+|+++||||||||+||.+ ++||+|||||||||+| .|++++++++++||++|+|||+ | ++|
T Consensus 1 RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d-~l~~~~~~~~~~Gi~~v~LFgv-~-~~K 77 (314)
T cd00384 1 RRLRRSPALRDLVRETRLSPDDLIYPLFVVEGIDEKEEISSMPGVYRLSVD-SLVEEAEELADLGIRAVILFGI-P-EHK 77 (314)
T ss_pred CCCCCChHHHHHHHcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEECC-C-CCC
Confidence 8999999999999999999999999999999985 7899999999999997 6999999999999999999996 6 479
Q ss_pred CcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 014237 186 SPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (428)
Q Consensus 186 D~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAP 265 (428)
|+.||+|||+||++|||||.||++||||+|||||||||||+||||||++ +|+||||+||++|++|||+||+||||||||
T Consensus 78 d~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~-~~~idND~Tl~~L~k~Als~A~AGADiVAP 156 (314)
T cd00384 78 DEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILK-DDYVDNDATLELLAKIAVSHAEAGADIVAP 156 (314)
T ss_pred CCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCccHHHHHHHHHHHHHHHHcCCCeeec
Confidence 9999999999999999999999999999999999999999999999996 689999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCce
Q 014237 266 SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345 (428)
Q Consensus 266 SDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADi 345 (428)
||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|++|||||
T Consensus 157 SdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~ 236 (314)
T cd00384 157 SDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADI 236 (314)
T ss_pred ccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHHH
Q 014237 346 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 423 (428)
Q Consensus 346 lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~a~wL 423 (428)
|||||||+|||||+++|++|++||+||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+|+||
T Consensus 237 lMVKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~id~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~~l 314 (314)
T cd00384 237 LMVKPALAYLDIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNGWIDEERVVLESLTSIKRAGADLIITYFAKDAARWL 314 (314)
T ss_pred EEEcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEEeecHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
No 6
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=100.00 E-value=1.2e-155 Score=1140.68 Aligned_cols=315 Identities=46% Similarity=0.769 Sum_probs=309.3
Q ss_pred CCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCC
Q 014237 103 SRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVP 181 (428)
Q Consensus 103 ~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~-~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~ 181 (428)
.+||||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .+++++++++++||++|+|||+ |
T Consensus 7 ~~R~RRlR~~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~~~I~smPg~~r~sid-~l~~~~~~~~~~Gi~~v~lFgv-~ 84 (322)
T PRK13384 7 LRRLRRLRRSEAMRDLVRETEVSLSDLIYPIFIEEHITDAVPISTLPGISRLPES-ALADEIERLYALGIRYVMPFGI-S 84 (322)
T ss_pred CcCCCcCCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCceecCCCCCcceECHH-HHHHHHHHHHHcCCCEEEEeCC-C
Confidence 36999999999999999999999999999999999986 7899999999999997 6999999999999999999996 6
Q ss_pred CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCC
Q 014237 182 DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGAD 261 (428)
Q Consensus 182 ~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGAD 261 (428)
+ +||+.||+|||+||+||||||.||++||||+|||||||||||+||||||++ +|+|+||+||++|++|||+||+||||
T Consensus 85 ~-~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~-~g~i~ND~Tl~~L~~~Als~A~AGAD 162 (322)
T PRK13384 85 H-HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLH-NDEVDNDATVENLVKQSVTAAKAGAD 162 (322)
T ss_pred C-CCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeecc-CCcCccHHHHHHHHHHHHHHHHcCCC
Confidence 4 699999999999999999999999999999999999999999999999996 69999999999999999999999999
Q ss_pred eecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhc
Q 014237 262 VVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESE 341 (428)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~E 341 (428)
||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+ ||||||||||+|++|||||+++|++|
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~-gDrksYQmdp~n~~eAlre~~~D~~E 241 (322)
T PRK13384 163 MLAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELS-GDRKSYQLDYANGRQALLEALLDEAE 241 (322)
T ss_pred eEecccccccHHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHHHHhcCCCC-CCcccccCCCCCHHHHHHHHHhhHhh
Confidence 99999999999999999999999999999999999999999999999999997 99999999999999999999999999
Q ss_pred CCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHH
Q 014237 342 GADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAAR 421 (428)
Q Consensus 342 GADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~a~ 421 (428)
|||||||||||+|||||+++|++|++||+||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+|+
T Consensus 242 GAD~lMVKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~ 321 (322)
T PRK13384 242 GADILMVKPGTPYLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALDERAVVTETLGGLKRAGADLIVSYYAKQYAQ 321 (322)
T ss_pred CCCEEEEcCCchHHHHHHHHHhccCCCEEEEEchHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCCEEeehhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H
Q 014237 422 C 422 (428)
Q Consensus 422 w 422 (428)
|
T Consensus 322 w 322 (322)
T PRK13384 322 W 322 (322)
T ss_pred C
Confidence 8
No 7
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=100.00 E-value=1.3e-153 Score=1125.45 Aligned_cols=312 Identities=43% Similarity=0.732 Sum_probs=305.2
Q ss_pred CChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcc-
Q 014237 111 KSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPT- 188 (428)
Q Consensus 111 ~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~-~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~- 188 (428)
.|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|+|||+.++++||+.
T Consensus 5 ~~~~~R~lv~Et~L~~~dlI~PlFV~eg~~~~~~I~smPG~~r~s~d-~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~ 83 (320)
T cd04824 5 AHPLLRQWQSERTLTKSNLIYPIFITDNPDAKQPIDSLPGINRYGVN-RLEEFLRPLVAKGLRSVILFGVPLKPGKDDRS 83 (320)
T ss_pred CCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEeCCCccccCCcCc
Confidence 589999999999999999999999999986 7899999999999997 6999999999999999999997333469999
Q ss_pred cCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014237 189 GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (428)
Q Consensus 189 Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM 268 (428)
||+|||+||+||||||+||++||||+|||||||||||+||||||++++|+||||+||++|++|||+||+|||||||||||
T Consensus 84 gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdM 163 (320)
T cd04824 84 GSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDM 163 (320)
T ss_pred cccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEecccc
Confidence 99999999999999999999999999999999999999999999977899999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHCCC-CCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEE
Q 014237 269 MDGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILL 347 (428)
Q Consensus 269 MDGRV~aIR~aLD~~Gf-~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilM 347 (428)
|||||++||++||++|| ++|+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|++|||||||
T Consensus 164 MDGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lM 243 (320)
T cd04824 164 MDGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIM 243 (320)
T ss_pred cccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEE
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHHH
Q 014237 348 VKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 423 (428)
Q Consensus 348 VKPal~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~a~wL 423 (428)
||||++|||||+++|++| ++||+||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+|+||
T Consensus 244 VKPal~YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iDe~~~~~Esl~~ikRAGAd~IiTYfA~~~a~wL 320 (320)
T cd04824 244 VKPGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITYFTPELLDWL 320 (320)
T ss_pred EcCCchHHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEEeecHHHHHhhC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999997
No 8
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-140 Score=1019.34 Aligned_cols=337 Identities=64% Similarity=0.968 Sum_probs=324.7
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHH
Q 014237 87 KPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAK 165 (428)
Q Consensus 87 ~~~~p~g~p~~~~~~~~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~-~~~I~SMPGv~r~s~~~~l~~~v~~ 165 (428)
+|++|- +..|+++.+|++|.|.||.+|.|++||.|+|+||||||||+|+++ .+||.||||+|||++++ |+++++.
T Consensus 2 ~~a~~l---~~~P~~~s~~l~~g~~~p~lR~~q~~~~is~~nliyPlFI~e~~dd~~pI~SmPg~~r~G~~r-L~e~l~p 77 (340)
T KOG2794|consen 2 KPATPL---IDQPLQLSRRLHRGYKHPLLRAWQQETNISPANLIYPLFIHEGEDDFTPIDSMPGIYRLGVNR-LKEELAP 77 (340)
T ss_pred CCCcch---hcCcccHHHHhhcCCCCHHHHHHhccCCCChhheeeeEEEecCcccccccccCCchhHHHHHH-HHHHHHH
Confidence 555665 788999999999999999999999999999999999999999996 59999999999999985 9999999
Q ss_pred HHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHH
Q 014237 166 ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETV 245 (428)
Q Consensus 166 ~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl 245 (428)
++++|+++|+|||++|+..||++||+|+|+||+|.+|||.||+.||||+|+|||||||||||||||++.|||.|.||+|+
T Consensus 78 lv~~Gl~sViLfgvv~~~~Kd~~gs~Ads~~gpvi~ai~~lr~~fPdL~i~cDVclc~YsshGHcGll~EdG~i~~~esv 157 (340)
T KOG2794|consen 78 LVAKGLRSVILFGVVPEALKDPTGSEADSDNGPVIRAIRLLRDRFPDLVIACDVCLCEYSSHGHCGLLGEDGVINNDESV 157 (340)
T ss_pred HHHhccceEEEecCCCccccCcccccccCCCCcHHHHHHHHHHhCcceEEEeeeeeccccCCCccceecccccccCHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCC
Q 014237 246 HQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNP 325 (428)
Q Consensus 246 ~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdp 325 (428)
++|+++|++||+||||||||||||||||+|||++|+++||++|+||||||||+|+||||||||++|+|+|||||+|||++
T Consensus 158 ~rlaevAv~yAkAGa~vVapSDmmDgRV~aIk~aL~~~~l~~vsvmSYsaKfas~fyGpFR~aa~saP~fgDrkcYQlP~ 237 (340)
T KOG2794|consen 158 HRLAEVAVSYAKAGADVVAPSDMMDGRVGAIKQALDAEGLQKVSVMSYSAKFASSFYGPFREAACSAPKFGDRKCYQLPA 237 (340)
T ss_pred HHHHHHHHHHHhcCCceecchHhhcchHHHHHHHHHHhcccceEEEeehhhhhhccccchHHHhhcCcccCCcceeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred CChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHH
Q 014237 326 ANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLR 404 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~k 404 (428)
+.++.|+|..++|+.||||||||||++|||||||.+|++++ +|+++|||||||||||||+++|.+|+|++|||+|++|+
T Consensus 238 ~~R~la~rA~erD~aEGAD~lmVKPg~pyLDIir~~kd~~~dlpi~ayqVSGEyaMi~aaa~~g~~Dlk~~vmEsm~~fr 317 (340)
T KOG2794|consen 238 NSRGLALRARERDVAEGADILMVKPGLPYLDIIRLLKDKTPDLPIAAYQVSGEYAMIKAAALAGMFDLKKVVMESMLGFR 317 (340)
T ss_pred chHHHHHHHHHhhhhccCceEEecCCCcHHHHHHHHHhcCCCCceEEEEecchHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 55556666677799999999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred HhcccEeehhcHHHHHHHHhccC
Q 014237 405 RAGADIILTYFALQAARCLCGEK 427 (428)
Q Consensus 405 RAGAd~IiTYfA~e~a~wL~~~~ 427 (428)
|||||+||||||+|+++||++++
T Consensus 318 RAGAdiIlTYfapq~l~~L~~e~ 340 (340)
T KOG2794|consen 318 RAGADIILTYFAPQLLTWLCGEN 340 (340)
T ss_pred hcCCcEEEeeccHHHHHHhhcCC
Confidence 99999999999999999999764
No 9
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.02 E-value=0.016 Score=53.07 Aligned_cols=164 Identities=19% Similarity=0.256 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeeccc-CCCCCCcceeecCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD-PYSSDGHDGIVRED 236 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc-~YTshGHcGil~~~ 236 (428)
+.++.++.+ +-|++.+=+ |+....+.| .+.|+.||+.+|+..+++|+-+. +.+
T Consensus 13 ~a~~~~~~l-~~~v~~iev------------~~~l~~~~g--~~~i~~l~~~~~~~~i~~d~k~~d~~~----------- 66 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEI------------GTPLIKNEG--IEAVKEMKEAFPDRKVLADLKTMDAGE----------- 66 (206)
T ss_pred HHHHHHHHc-ccCeeEEEe------------CCHHHHHhC--HHHHHHHHHHCCCCEEEEEEeeccchH-----------
Confidence 466667766 777765443 222233445 47999999999998899998542 221
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCC
Q 014237 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315 (428)
Q Consensus 237 g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDG-RV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~f 315 (428)
.++-..+++|||+|.-.-...+ .+..+-+...+.|. .+|. .++
T Consensus 67 -------------~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~---~~~~-------~~~------------- 110 (206)
T TIGR03128 67 -------------YEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGK---EVQV-------DLI------------- 110 (206)
T ss_pred -------------HHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCC---EEEE-------Eec-------------
Confidence 1444578999999964333333 45666666666663 3332 111
Q ss_pred CCccccCCCCCChHHHHHHHHhchhcCCceEEecCCC-------chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 014237 316 GDKKTYQMNPANYREALVEAQADESEGADILLVKPGL-------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 388 (428)
Q Consensus 316 gDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal-------~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G 388 (428)
+|....|.++++ .+.|+|+|.+-|+. .+++-|+++++.++.| -..|.|
T Consensus 111 --------~~~t~~~~~~~~---~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~--~i~v~G------------ 165 (206)
T TIGR03128 111 --------NVKDKVKRAKEL---KELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEA--RVAVAG------------ 165 (206)
T ss_pred --------CCCChHHHHHHH---HHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCC--cEEEEC------------
Confidence 222333333433 34499999998863 5889999999887643 244433
Q ss_pred CCchhhHHHHHHHHHHHhcccEeeh
Q 014237 389 MIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 389 ~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
-++ .|.+..+..+|||.++.
T Consensus 166 GI~-----~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 166 GIN-----LDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CcC-----HHHHHHHHHcCCCEEEE
Confidence 343 34455777899997764
No 10
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.94 E-value=0.045 Score=56.51 Aligned_cols=167 Identities=24% Similarity=0.298 Sum_probs=104.8
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceee
Q 014237 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIV 233 (428)
Q Consensus 154 s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil 233 (428)
++. +.++.++++.+.|+..+-+ | .......+ .++|+.|++.+++..|+.|+-+.-.
T Consensus 14 ~~~-~~~~~~~~~~~~Gv~~ie~-g-----------~p~~~~~~--~~~i~~l~~~~~~~~ii~D~kl~d~--------- 69 (430)
T PRK07028 14 ELD-RAVEIAKEAVAGGADWIEA-G-----------TPLIKSEG--MNAIRTLRKNFPDHTIVADMKTMDT--------- 69 (430)
T ss_pred CHH-HHHHHHHHHHhcCCcEEEe-C-----------CHHHHHhh--HHHHHHHHHHCCCCEEEEEeeeccc---------
Confidence 343 5788899999999988732 2 11111122 6899999999998889999765321
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCC
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVA-PSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sa 312 (428)
|.+ ..-..+++|||.|. |...-+..+..+++...+.|. .+.+-.
T Consensus 70 ---g~~-----------~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~-~~~~g~-------------------- 114 (430)
T PRK07028 70 ---GAI-----------EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGV-RLMADL-------------------- 114 (430)
T ss_pred ---hHH-----------HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCC-EEEEEe--------------------
Confidence 211 22235689999777 543223356666666666765 222200
Q ss_pred CCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCC-------CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHH
Q 014237 313 PRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPG-------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 385 (428)
Q Consensus 313 p~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPa-------l~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa 385 (428)
+.|.+..|.++++. +.|+|+|.+-|+ ...++.|+++++.+++|+.+ .|
T Consensus 115 ----------~s~~t~~e~~~~a~---~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a---~G--------- 169 (430)
T PRK07028 115 ----------INVPDPVKRAVELE---ELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAV---AG--------- 169 (430)
T ss_pred ----------cCCCCHHHHHHHHH---hcCCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEE---EC---------
Confidence 11112223344443 469999998886 34579999999998999876 23
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 386 ALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 386 ~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
-|+. |.+..+..+|||.|+
T Consensus 170 ---GI~~-----~n~~~~l~aGAdgv~ 188 (430)
T PRK07028 170 ---GLDA-----ETAAKAVAAGADIVI 188 (430)
T ss_pred ---CCCH-----HHHHHHHHcCCCEEE
Confidence 3343 456677888998766
No 11
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=96.80 E-value=0.002 Score=66.03 Aligned_cols=109 Identities=27% Similarity=0.335 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCC-CCCccccC
Q 014237 244 TVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYQ 322 (428)
Q Consensus 244 Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~-fgDRktYQ 322 (428)
+.+.+++++-.++++|+|.|- |.+++.+-+-|++.-+..- .++|++.+.+ -|.++-|-
T Consensus 144 d~~~la~~~~~l~~gGvD~Ik----------------dde~~ge~~~~~~eER~~~-----v~~av~~a~~~TG~~~~y~ 202 (367)
T cd08205 144 SPEELAELAYELALGGIDLIK----------------DDELLADQPYAPFEERVRA-----CMEAVRRANEETGRKTLYA 202 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeee----------------ccccccCcccCCHHHHHHH-----HHHHHHHHHHhhCCcceEE
Confidence 456788888999999999986 3344455555666555443 3455544432 36788888
Q ss_pred CCC-CChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEE
Q 014237 323 MNP-ANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQ 373 (428)
Q Consensus 323 mdp-aN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaYq 373 (428)
.+. +..+|+++.++.-.+.|||.|||-|-..+++.++.+++..++|+.++-
T Consensus 203 ~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~~~lpi~~H~ 254 (367)
T cd08205 203 PNITGDPDELRRRADRAVEAGANALLINPNLVGLDALRALAEDPDLPIMAHP 254 (367)
T ss_pred EEcCCCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhcCCCeEEEcc
Confidence 887 567999999999999999999999999999999999998899998853
No 12
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.77 E-value=0.016 Score=55.94 Aligned_cols=190 Identities=20% Similarity=0.247 Sum_probs=116.2
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeec
Q 014237 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVA 220 (428)
Q Consensus 146 SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v-----~rAIr~iK~~~Pdl~VitDVc 220 (428)
.|||+|=... .+-+.+.|++.+.+=|.. -..+..+.+.+.+ ...++.|.... ++-|++|.-
T Consensus 12 ~~~~~~D~~s-------A~~~e~~G~~ai~~s~~~------~~~s~G~pD~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~ 77 (243)
T cd00377 12 VLPGAWDALS-------ARLAERAGFKAIYTSGAG------VAASLGLPDGGLLTLDEVLAAVRRIARAV-DLPVIADAD 77 (243)
T ss_pred EecCCCCHHH-------HHHHHHcCCCEEEeccHH------HHHhcCCCCCCcCCHHHHHHHHHHHHhhc-cCCEEEEcC
Confidence 4888864432 223344599998873321 0112233333333 24455554443 344666642
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-------------------CchHHHHHHHHH
Q 014237 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-------------------DGRVGAIRAALD 281 (428)
Q Consensus 221 Lc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM-------------------DGRV~aIR~aLD 281 (428)
. |+= |.+ .+.+.+-.+.++|++.|-..|-. -.+|.++|++.+
T Consensus 78 ~---------------G~g-~~~---~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~ 138 (243)
T cd00377 78 T---------------GYG-NAL---NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD 138 (243)
T ss_pred C---------------CCC-CHH---HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence 2 211 222 23344455677999999885543 134555555555
Q ss_pred HCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHH
Q 014237 282 AEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLL 361 (428)
Q Consensus 282 ~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~v 361 (428)
.. .++.|++-+==|... ....+||++.+..=.+-|||+|||- +..=.|-++++
T Consensus 139 ~~--~~~~IiARTDa~~~~------------------------~~~~~eai~Ra~ay~~AGAD~v~v~-~~~~~~~~~~~ 191 (243)
T cd00377 139 DL--PDFVIIARTDALLAG------------------------EEGLDEAIERAKAYAEAGADGIFVE-GLKDPEEIRAF 191 (243)
T ss_pred cc--CCeEEEEEcCchhcc------------------------CCCHHHHHHHHHHHHHcCCCEEEeC-CCCCHHHHHHH
Confidence 44 678888764333222 3357899999999999999999995 44467888999
Q ss_pred HhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 362 RDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 362 k~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
.+..++|+..|++.|-- +++ +..+.+.|.+.|+.
T Consensus 192 ~~~~~~Pl~~~~~~~~~----------~~~--------~~~l~~lG~~~v~~ 225 (243)
T cd00377 192 AEAPDVPLNVNMTPGGN----------LLT--------VAELAELGVRRVSY 225 (243)
T ss_pred HhcCCCCEEEEecCCCC----------CCC--------HHHHHHCCCeEEEE
Confidence 99999999999876542 233 33677779988765
No 13
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=96.58 E-value=0.011 Score=60.87 Aligned_cols=135 Identities=27% Similarity=0.405 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCC--------CCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCC
Q 014237 242 DETVHQLCKQAVSQARAGADVVSPSD--------MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (428)
Q Consensus 242 D~Tl~~Lak~Als~A~AGADiVAPSD--------MMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap 313 (428)
=-+.+.+++++-.++++|+|+|-... =++=||.++.++++++. +
T Consensus 137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~-------------------------~--- 188 (364)
T cd08210 137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEAN-------------------------A--- 188 (364)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHH-------------------------h---
Confidence 45677889999999999999994322 12334555555544432 1
Q ss_pred CCCCccccCCCC-CChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCC-CCeEEE-EechHHHHHHHHHHCCCC
Q 014237 314 RFGDKKTYQMNP-ANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAY-QVSGEYSMIKAGGALKMI 390 (428)
Q Consensus 314 ~fgDRktYQmdp-aN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~-lPvaaY-qVSGEYaMIkaAa~~G~i 390 (428)
.-|.|+-|-.+- +...|+++.++.=.+.|||.|||=|...++|.++.+++... +|+.++ ..+|-|.- ...+ +
T Consensus 189 eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~----~~~~-i 263 (364)
T cd08210 189 ETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFVS----SGDG-I 263 (364)
T ss_pred hcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEcccccccccc----CCCc-c
Confidence 126678887777 45678888888888899999999999999999999999999 999887 33333320 1112 2
Q ss_pred chhhHHHHHHHHHHHhcccEee
Q 014237 391 DEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 391 D~~~~vlEsL~~~kRAGAd~Ii 412 (428)
+. ..++..| .+-+|||+++
T Consensus 264 s~-~~~~~kl--~RlaGad~~~ 282 (364)
T cd08210 264 SH-ALLFGTL--FRLAGADAVI 282 (364)
T ss_pred cH-HHHHHHH--HHHhCCCEEE
Confidence 22 1233332 2338999984
No 14
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.28 E-value=0.049 Score=53.15 Aligned_cols=210 Identities=17% Similarity=0.205 Sum_probs=131.3
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC-----HHHHHHHHHHHCCCeEEEeeec
Q 014237 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL-----VPRTIWLLKDRYPDLVIYTDVA 220 (428)
Q Consensus 146 SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~-----v~rAIr~iK~~~Pdl~VitDVc 220 (428)
.|||+|=... .+-+.+.|++.+.+=+... ..+..|.+-+. +...++.|.+..|.+-|++|.=
T Consensus 15 ~~~~ayD~~s-------A~i~e~aG~dai~v~~s~~------a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~ 81 (240)
T cd06556 15 ATLTAYDYSM-------AKQFADAGLNVMLVGDSQG------MTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLP 81 (240)
T ss_pred EEecCCCHHH-------HHHHHHcCCCEEEEChHHH------HHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 3888865433 2233455999988733210 01122322233 3466777888888889999962
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--CCchHHHHHHHHHHCCCCCceeechhhhhc
Q 014237 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--MDGRVGAIRAALDAEGFQHVSIMSYTAKYA 298 (428)
Q Consensus 221 Lc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM--MDGRV~aIR~aLD~~Gf~~v~IMSYsaKyA 298 (428)
+ |+=.+ .+...+.+-.+.++||+.|--.|- |-.+|.+||+ +| +.||+..-=+.
T Consensus 82 ---~------------G~g~~---~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~----a~---i~ViaRtd~~p 136 (240)
T cd06556 82 ---F------------GAYGA---PTAAFELAKTFMRAGAAGVKIEGGEWHIETLQMLTA----AA---VPVIAHTGLTP 136 (240)
T ss_pred ---C------------CCCcC---HHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHH----cC---CeEEEEeCCch
Confidence 2 22221 123455666777899999988885 2234444443 34 68887743222
Q ss_pred cccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHH
Q 014237 299 SSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEY 378 (428)
Q Consensus 299 SafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEY 378 (428)
+++ . .+|--|-|.......+|+|+.+..=.+-|||+|.+- +. =.+.++++.+..++|+.. +-+|.
T Consensus 137 q~~--------~---~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e-~~-~~e~~~~i~~~~~~P~~~-~gag~- 201 (240)
T cd06556 137 QSV--------N---TSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME-CV-PVELAKQITEALAIPLAG-IGAGS- 201 (240)
T ss_pred hhh--------h---ccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc-CC-CHHHHHHHHHhCCCCEEE-EecCc-
Confidence 211 0 011113444455567899999998889999999995 66 799999999999999876 55554
Q ss_pred HHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHH
Q 014237 379 SMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARC 422 (428)
Q Consensus 379 aMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~a~w 422 (428)
+.|..-.+++-|+.+.. + -...|+++.+++
T Consensus 202 ----------~~dgq~lv~~d~lg~~~---~-~~p~f~~~~~~~ 231 (240)
T cd06556 202 ----------GTDGQFLVLADAFGITG---G-HIPKFAKNFHAE 231 (240)
T ss_pred ----------CCCceEEeHHhhhcccC---C-CCCchHHHHhhh
Confidence 56777777777777742 1 266777776654
No 15
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.05 E-value=0.18 Score=44.42 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCC-CceeechhhhhccccccchhhhhcCCCCCCCcc
Q 014237 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ-HVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (428)
Q Consensus 241 ND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~-~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRk 319 (428)
|.+.++.+++.++ ++|+|.|.... ..++...+..+ . +++|+.=... .+. +
T Consensus 11 d~~~~~~~~~~~~---~~gv~gi~~~g------~~i~~~~~~~~-~~~~~v~~~v~~-~~~----------------~-- 61 (201)
T cd00945 11 TLEDIAKLCDEAI---EYGFAAVCVNP------GYVRLAADALA-GSDVPVIVVVGF-PTG----------------L-- 61 (201)
T ss_pred CHHHHHHHHHHHH---HhCCcEEEECH------HHHHHHHHHhC-CCCCeEEEEecC-CCC----------------C--
Confidence 5566666666554 58999887664 44444444432 2 5665532110 000 1
Q ss_pred ccCCCCCChHHHHHHHHhchhcCCceEEecCCCch---------HHHHHHHHhh--CCCCeEEEEechH
Q 014237 320 TYQMNPANYREALVEAQADESEGADILLVKPGLPY---------LDVIRLLRDK--YPLPIAAYQVSGE 377 (428)
Q Consensus 320 tYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y---------LDII~~vk~~--~~lPvaaYqVSGE 377 (428)
...++++.+++.=.+-|||.+|+=|-.-| ++.++++.+. .++|+..|+.-+-
T Consensus 62 ------~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~ 124 (201)
T cd00945 62 ------TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRG 124 (201)
T ss_pred ------CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCC
Confidence 23566677666666679999999875433 5888899988 4899999998553
No 16
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.67 E-value=0.66 Score=40.93 Aligned_cols=152 Identities=15% Similarity=0.190 Sum_probs=90.7
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC--eEEEeeecccCCCCCCcce
Q 014237 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDG 231 (428)
Q Consensus 154 s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pd--l~VitDVcLc~YTshGHcG 231 (428)
..+ .+.+.++.+.+.|+..|.+.| +.++.+++..++ +-|++=+. ..|
T Consensus 11 d~~-~~~~~~~~~~~~gv~gi~~~g----------------------~~i~~~~~~~~~~~~~v~~~v~--~~~------ 59 (201)
T cd00945 11 TLE-DIAKLCDEAIEYGFAAVCVNP----------------------GYVRLAADALAGSDVPVIVVVG--FPT------ 59 (201)
T ss_pred CHH-HHHHHHHHHHHhCCcEEEECH----------------------HHHHHHHHHhCCCCCeEEEEec--CCC------
Confidence 443 588899999999999998887 567777776664 55553221 111
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCCC-----CCchHHHHHHHHHHCCCCCceeechhhhhcccccc
Q 014237 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSDM-----MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (428)
Q Consensus 232 il~~~g~IdND~Tl~~Lak~Als~A~AGADiVA---PSDM-----MDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYG 303 (428)
+. .+.+...+.+-...++|||.|. |..- .++-+..+++..++.+ .+.++|-|-.
T Consensus 60 -----~~----~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pv~iy~~-------- 121 (201)
T cd00945 60 -----GL----TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAAD-GGLPLKVILE-------- 121 (201)
T ss_pred -----CC----CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhc-CCceEEEEEE--------
Confidence 11 3345555666666788999875 3211 2555666666666541 2577887753
Q ss_pred chhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCC----chHHHHHHHHhhC--CCCeEEE
Q 014237 304 PFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGL----PYLDVIRLLRDKY--PLPIAAY 372 (428)
Q Consensus 304 PFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal----~YLDII~~vk~~~--~lPvaaY 372 (428)
|.+. +++....++.+.+ .+.|+|+|=+.++. ..++-++++++.+ ++|+.++
T Consensus 122 p~~~---------------~~~~~~~~~~~~~---~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 178 (201)
T cd00945 122 TRGL---------------KTADEIAKAARIA---AEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAA 178 (201)
T ss_pred CCCC---------------CCHHHHHHHHHHH---HHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEE
Confidence 1111 3333344443333 24788876555442 2678888888877 5566543
No 17
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=94.90 E-value=1.2 Score=48.60 Aligned_cols=216 Identities=19% Similarity=0.224 Sum_probs=135.2
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcceee
Q 014237 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGIV 233 (428)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~-Pdl~VitDVcLc~YTshGHcGil 233 (428)
++++++.+ -++.|-.-+.- |+.-+...+ ..|-+ ..-..+..+|++..++.. .+..|..+ +.||...|
T Consensus 43 e~i~~vH~~yl~AGAdvi~TnTy~as~~~l~-~~g~~-~~~~~l~~~av~lAr~a~~~~~~Vags--iGP~g~~~----- 113 (612)
T PRK08645 43 ELILRIHREYIEAGADVIQTNTFGANRIKLK-RYGLE-DKVKEINRAAVRLAREAAGDDVYVAGT--IGPIGGRG----- 113 (612)
T ss_pred HHHHHHHHHHHHhCCCEEecCcccccHHHHH-hcCch-HHHHHHHHHHHHHHHHHhcCCCeEEEe--CCCCCCCC-----
Confidence 35555554 67999773332 553221111 12221 223456778888888876 34667766 45665542
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCce-eechhhhhccccccchhhhhcC
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVS-IMSYTAKYASSFYGPFREALDS 311 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~-IMSYsaKyASafYGPFRdAa~S 311 (428)
..|.++.++-.+....|+-.++++|+|+++=--|.+ -.+.++.+++.+.+ +++ ++|.+.+
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~--~~p~~~Sf~~~--------------- 175 (612)
T PRK08645 114 -PLGDISLEEIRREFREQIDALLEEGVDGLLLETFYDLEELLLALEAAREKT--DLPIIAQVAFH--------------- 175 (612)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhC--CCcEEEEEEEC---------------
Confidence 234466788888899999999999999999988888 44566777776553 222 2333221
Q ss_pred CCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCC-c--hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 014237 312 NPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGL-P--YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 388 (428)
Q Consensus 312 ap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal-~--YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G 388 (428)
....-+|-....+++..+. +.|+|.|++==.. | -+.+|+.++...++|+.+|=-+|+-.- .....-
T Consensus 176 ------~~g~l~~G~~~~~~~~~~~---~~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~--~~~~~~ 244 (612)
T PRK08645 176 ------EDGVTQNGTSLEEALKELV---AAGADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNAGLPEY--VDGRYV 244 (612)
T ss_pred ------CCCeeCCCCCHHHHHHHHH---hCCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECCCCCCC--CCCccc
Confidence 1123345556777777764 3579999986553 2 355666666666899999999999321 111112
Q ss_pred CCchhhHHHHHHHHHHHhcccEe
Q 014237 389 MIDEQRVMMESLMCLRRAGADII 411 (428)
Q Consensus 389 ~iD~~~~vlEsL~~~kRAGAd~I 411 (428)
|-.....+-|....+..+||.+|
T Consensus 245 ~~~~p~~~~~~~~~~~~~Ga~ii 267 (612)
T PRK08645 245 YSANPEYFAEYALEFVEQGVRLI 267 (612)
T ss_pred cCCCHHHHHHHHHHHHHhCCCEE
Confidence 32233568888889999999987
No 18
>PLN02489 homocysteine S-methyltransferase
Probab=94.88 E-value=1 Score=45.77 Aligned_cols=223 Identities=16% Similarity=0.230 Sum_probs=136.4
Q ss_pred hHHHHHHH-HHHcCCCeEEE---eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC---------------------CC
Q 014237 158 GLVQEVAK-ARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY---------------------PD 212 (428)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L---Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~---------------------Pd 212 (428)
++++.+.+ -++.|-. |+. |+.-+...+ ..|-+.-.-+.+..+|++..|++. .+
T Consensus 55 e~V~~vH~~yl~AGAd-vI~TnTy~a~~~~l~-~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 132 (335)
T PLN02489 55 HLIRKVHLDYLEAGAD-IIITASYQATIQGFE-SRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRP 132 (335)
T ss_pred HHHHHHHHHHHHhCCC-EEEecccccCHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCC
Confidence 35555554 6789987 544 443111111 112100011346778888777654 25
Q ss_pred eEEEeeecccCCCCCCcceeecCCC----ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCC
Q 014237 213 LVIYTDVALDPYSSDGHDGIVREDG----VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQH 287 (428)
Q Consensus 213 l~VitDVcLc~YTshGHcGil~~~g----~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~ 287 (428)
.+|..++ -||-..=+.|--. +| .+.-++=.+....|+-.+.++|+|+++=--|.+ -.+.++.+++.+.+-.-
T Consensus 133 ~~VaGsi--GP~g~~l~~g~ey-~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~ 209 (335)
T PLN02489 133 ILVAASI--GSYGAYLADGSEY-SGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKI 209 (335)
T ss_pred cEEEEEc--CCccccccCCccc-CCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCC
Confidence 7788775 4565443433211 11 255677777788888889999999999988888 44667888887765322
Q ss_pred ceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCc--hHHHHHHHHhhC
Q 014237 288 VSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLP--YLDVIRLLRDKY 365 (428)
Q Consensus 288 v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~--YLDII~~vk~~~ 365 (428)
-.++|.+.+ + + ..-++-.+..+++..+.. ..++|.|.+==..| .+.+|+.++...
T Consensus 210 p~~iS~t~~----------~---------~--~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC~~p~~~~~~l~~l~~~~ 266 (335)
T PLN02489 210 PAWISFNSK----------D---------G--VNVVSGDSLLECASIADS--CKKVVAVGINCTPPRFIHGLILSIRKVT 266 (335)
T ss_pred eEEEEEEeC----------C---------C--CccCCCCcHHHHHHHHHh--cCCceEEEecCCCHHHHHHHHHHHHhhc
Confidence 334555332 1 0 112344456777666532 24678887754433 478888888888
Q ss_pred CCCeEEEEechHHHHHHHHHHCCCCch----hhHHHHHHHHHHHhcccEe
Q 014237 366 PLPIAAYQVSGEYSMIKAGGALKMIDE----QRVMMESLMCLRRAGADII 411 (428)
Q Consensus 366 ~lPvaaYqVSGEYaMIkaAa~~G~iD~----~~~vlEsL~~~kRAGAd~I 411 (428)
+.|+.+|=-+|+. .-....+|... ...+.|....++.+||.+|
T Consensus 267 ~~pl~vyPNaG~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iI 313 (335)
T PLN02489 267 SKPIVVYPNSGET---YDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLI 313 (335)
T ss_pred CCcEEEECCCCCC---CCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 9999999999984 22334577522 2357788888999999876
No 19
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=94.85 E-value=1.3 Score=40.21 Aligned_cols=163 Identities=21% Similarity=0.280 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
...+.++.+.+. ++.+-+ |. |- ..++| ...|+.+|+.+|++.|+.|.-+..+
T Consensus 14 ~~~~~~~~l~~~-i~~iei-g~-~~----------~~~~g--~~~i~~i~~~~~~~~i~~~~~v~~~------------- 65 (202)
T cd04726 14 EALELAKKVPDG-VDIIEA-GT-PL----------IKSEG--MEAVRALREAFPDKIIVADLKTADA------------- 65 (202)
T ss_pred HHHHHHHHhhhc-CCEEEc-CC-HH----------HHHhC--HHHHHHHHHHCCCCEEEEEEEeccc-------------
Confidence 477777777777 877655 42 31 12334 5789999999999988877654311
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCC
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM-DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fg 316 (428)
.| .++-..+++|||++.--+.. ......+-+...++|. .+.+ ..
T Consensus 66 --~~--------~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~-~~~v---------~~--------------- 110 (202)
T cd04726 66 --GA--------LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGK-EVQV---------DL--------------- 110 (202)
T ss_pred --cH--------HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCC-eEEE---------EE---------------
Confidence 11 23456789999999833322 1233444444444442 1110 00
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCceEEecCC--------CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGADILLVKPG--------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 388 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPa--------l~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G 388 (428)
+.|.+..|+++ + .+.|+|++.+-|+ ..+++-|+++++..++|+. |.|
T Consensus 111 ------~~~~t~~e~~~-~---~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~---~~G------------ 165 (202)
T cd04726 111 ------IGVEDPEKRAK-L---LKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVA---VAG------------ 165 (202)
T ss_pred ------eCCCCHHHHHH-H---HHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEE---EEC------------
Confidence 23336666654 2 3359999988663 4678889998887678864 443
Q ss_pred CCchhhHHHHHHHHHHHhcccEeeh
Q 014237 389 MIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 389 ~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
-++. |.+..+..+|||.++.
T Consensus 166 GI~~-----~~i~~~~~~Gad~vvv 185 (202)
T cd04726 166 GITP-----DTLPEFKKAGADIVIV 185 (202)
T ss_pred CcCH-----HHHHHHHhcCCCEEEE
Confidence 3443 4567888999998764
No 20
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=94.78 E-value=0.94 Score=44.15 Aligned_cols=70 Identities=23% Similarity=0.247 Sum_probs=47.8
Q ss_pred CCCChHHHHHHHHhchhcCCceEEecCCCc-hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc--hhhHHHHHH
Q 014237 324 NPANYREALVEAQADESEGADILLVKPGLP-YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID--EQRVMMESL 400 (428)
Q Consensus 324 dpaN~~EAlrE~~lDi~EGADilMVKPal~-YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD--~~~~vlEsL 400 (428)
++....++.+.+. +-|||+| |...+ -++.++++.+..++||.+ .|-++ ..+-++|.+
T Consensus 158 ~~~~i~~a~~~a~---e~GAD~v--Kt~~~~~~~~l~~~~~~~~ipV~a---------------~GGi~~~~~~~~l~~v 217 (267)
T PRK07226 158 DPEVVAHAARVAA---ELGADIV--KTNYTGDPESFREVVEGCPVPVVI---------------AGGPKTDTDREFLEMV 217 (267)
T ss_pred cHHHHHHHHHHHH---HHCCCEE--eeCCCCCHHHHHHHHHhCCCCEEE---------------EeCCCCCCHHHHHHHH
Confidence 4445555555554 5799999 55521 168888988888899865 34555 234568888
Q ss_pred HHHHHhcccEeeh
Q 014237 401 MCLRRAGADIILT 413 (428)
Q Consensus 401 ~~~kRAGAd~IiT 413 (428)
....+|||+.|..
T Consensus 218 ~~~~~aGA~Gis~ 230 (267)
T PRK07226 218 RDAMEAGAAGVAV 230 (267)
T ss_pred HHHHHcCCcEEeh
Confidence 7888899987654
No 21
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=94.57 E-value=2.2 Score=43.34 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=93.6
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014237 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (428)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~I 239 (428)
++..+-+-+.|--+||..-.||.+.+-..|-.- -++ ++-|+.||+.. ++=|| |+++ .|+
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R--~~~--~~~I~~Ik~~V-~iPVI--------------Gi~K-~~~- 76 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVAR--MAD--PKMIKEIMDAV-SIPVM--------------AKVR-IGH- 76 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeee--cCC--HHHHHHHHHhC-CCCeE--------------Eeee-hhH-
Confidence 677778889999999999888865443333211 122 35689999887 77777 3443 233
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCC
Q 014237 240 MNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (428)
Q Consensus 240 dND~Tl~~Lak~Als~A~AGADiVAPSDMM---DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fg 316 (428)
.+.|....++|+|||+=|+-- |--+..||. .| ++++|+
T Consensus 77 ---------~~Ea~~L~eaGvDiIDaT~r~rP~~~~~~~iK~-----~~-~~l~MA------------------------ 117 (283)
T cd04727 77 ---------FVEAQILEALGVDMIDESEVLTPADEEHHIDKH-----KF-KVPFVC------------------------ 117 (283)
T ss_pred ---------HHHHHHHHHcCCCEEeccCCCCcHHHHHHHHHH-----Hc-CCcEEc------------------------
Confidence 677888899999999544432 222333322 24 555554
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCceEEecC--------------------------------------CCchHHHH
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGADILLVKP--------------------------------------GLPYLDVI 358 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGADilMVKP--------------------------------------al~YLDII 358 (428)
|-+|.+||++. +++|||||=-|= ..+=+|.|
T Consensus 118 -------D~stleEal~a----~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elL 186 (283)
T cd04727 118 -------GARNLGEALRR----ISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELV 186 (283)
T ss_pred -------cCCCHHHHHHH----HHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHH
Confidence 33477788777 468999987772 22447899
Q ss_pred HHHHhhCCCCeE
Q 014237 359 RLLRDKYPLPIA 370 (428)
Q Consensus 359 ~~vk~~~~lPva 370 (428)
+++++..++||.
T Consensus 187 k~l~~~~~iPVV 198 (283)
T cd04727 187 KETAKLGRLPVV 198 (283)
T ss_pred HHHHHhcCCCeE
Confidence 999999999986
No 22
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.43 E-value=0.87 Score=44.74 Aligned_cols=96 Identities=17% Similarity=0.312 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYS 225 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv---------i~--~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~-Pdl~VitDVcLc~YT 225 (428)
...+.++.+.+.|...|-|-+- -| +...|+.|..--|.--++.+.|+.+++.+ +|+.|..++..+.+.
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC
Confidence 4667777888999999988542 12 24567777665555566788999999998 589999999887663
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014237 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (428)
Q Consensus 226 shGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD 267 (428)
..| . |.+...+.+-...++|+|.|.-|.
T Consensus 222 ~~g----------~----~~~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 222 PGG----------L----TLEEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred CCC----------C----CHHHHHHHHHHHHHcCCCEEEeCC
Confidence 222 2 233344455556788999998654
No 23
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.40 E-value=4.1 Score=37.57 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014237 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (428)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~ 236 (428)
+.+++.++.+++.|++.|-+ . .|++. ....|+.+++.+|++.|-+.
T Consensus 16 ~~~~~~~~~l~~~G~~~vev----~--~~~~~----------~~~~i~~l~~~~~~~~iGag------------------ 61 (190)
T cd00452 16 EDALALAEALIEGGIRAIEI----T--LRTPG----------ALEAIRALRKEFPEALIGAG------------------ 61 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEE----e--CCChh----------HHHHHHHHHHHCCCCEEEEE------------------
Confidence 35889999999999998766 1 23221 44499999999998665432
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCC
Q 014237 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (428)
Q Consensus 237 g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fg 316 (428)
.|.+.+.++. ..++|||.|.-.. .|-.+...++ ..| +
T Consensus 62 -~v~~~~~~~~-------a~~~Ga~~i~~p~-~~~~~~~~~~---~~~---~---------------------------- 98 (190)
T cd00452 62 -TVLTPEQADA-------AIAAGAQFIVSPG-LDPEVVKAAN---RAG---I---------------------------- 98 (190)
T ss_pred -eCCCHHHHHH-------HHHcCCCEEEcCC-CCHHHHHHHH---HcC---C----------------------------
Confidence 2332233332 3468999664211 1211111111 111 0
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhh
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQR 394 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-LDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~ 394 (428)
.+-....|..|+.+.. +.|||+|.+=|+-+. .+.++.++..+ ++|+.| -|-|+.
T Consensus 99 ---~~i~gv~t~~e~~~A~----~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a---------------~GGI~~-- 154 (190)
T cd00452 99 ---PLLPGVATPTEIMQAL----ELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMP---------------TGGVSL-- 154 (190)
T ss_pred ---cEECCcCCHHHHHHHH----HCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEE---------------eCCCCH--
Confidence 1112233667765553 589999999775443 67788888888 488876 455654
Q ss_pred HHHHHHHHHHHhcccEeehhcH
Q 014237 395 VMMESLMCLRRAGADIILTYFA 416 (428)
Q Consensus 395 ~vlEsL~~~kRAGAd~IiTYfA 416 (428)
|.+..+..+|||.|.+-.+
T Consensus 155 ---~n~~~~~~~G~~~v~v~s~ 173 (190)
T cd00452 155 ---DNAAEWLAAGVVAVGGGSL 173 (190)
T ss_pred ---HHHHHHHHCCCEEEEEchh
Confidence 5667889999999765443
No 24
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=94.34 E-value=1.5 Score=44.54 Aligned_cols=140 Identities=20% Similarity=0.311 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014237 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (428)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~I 239 (428)
.+..+-+-+.|--+||-.-.||.+-+-.-|-.--+ + ++-|+.||+.. ++=||.=+- .||
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~--~--p~~I~~I~~~V-~iPVig~~k------igh---------- 78 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADIRASGGVARMS--D--PKMIKEIMDAV-SIPVMAKVR------IGH---------- 78 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhhHhcCCeeecC--C--HHHHHHHHHhC-CCCEEEEee------ccH----------
Confidence 67788889999999999888886433222221111 1 35689999987 777775332 233
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc---hHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCC
Q 014237 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDG---RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (428)
Q Consensus 240 dND~Tl~~Lak~Als~A~AGADiVAPSDMMDG---RV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fg 316 (428)
-+.|-.+.++|+|+|.=|+-.-- .+..+ ++.| ++++|.
T Consensus 79 ---------~~Ea~~L~~~GvDiIDeTe~lrPade~~~~~-----K~~f-~vpfma------------------------ 119 (287)
T TIGR00343 79 ---------FVEAQILEALGVDYIDESEVLTPADWTFHID-----KKKF-KVPFVC------------------------ 119 (287)
T ss_pred ---------HHHHHHHHHcCCCEEEccCCCCcHHHHHHHH-----HHHc-CCCEEc------------------------
Confidence 56777888999999965554322 22222 1223 444442
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCceEEec--CC-------------------------------------CchHHH
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGADILLVK--PG-------------------------------------LPYLDV 357 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGADilMVK--Pa-------------------------------------l~YLDI 357 (428)
|-+|..||+|. ++||||||-.| .+ .+=+|.
T Consensus 120 -------d~~~l~EAlra----i~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~el 188 (287)
T TIGR00343 120 -------GARDLGEALRR----INEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVEL 188 (287)
T ss_pred -------cCCCHHHHHHH----HHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHH
Confidence 34588888887 46999999999 11 133688
Q ss_pred HHHHHhhCCCCeE
Q 014237 358 IRLLRDKYPLPIA 370 (428)
Q Consensus 358 I~~vk~~~~lPva 370 (428)
|+++++..++||.
T Consensus 189 Lkei~~~~~iPVV 201 (287)
T TIGR00343 189 LLEVLKLGKLPVV 201 (287)
T ss_pred HHHHHHhCCCCEE
Confidence 8888888888985
No 25
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.20 E-value=2.6 Score=40.61 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
+.++.++.+.+.||+.+=+ +. . .++ -.++|+.++++||++.|-+|.
T Consensus 28 ~a~~i~~al~~~Gi~~iEi-tl-~-------------~~~-~~~~I~~l~~~~p~~~IGAGT------------------ 73 (212)
T PRK05718 28 DAVPLAKALVAGGLPVLEV-TL-R-------------TPA-ALEAIRLIAKEVPEALIGAGT------------------ 73 (212)
T ss_pred HHHHHHHHHHHcCCCEEEE-ec-C-------------Ccc-HHHHHHHHHHHCCCCEEEEee------------------
Confidence 5899999999999998765 32 1 111 347999999999998886654
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCC
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgD 317 (428)
|.++ +++-...+||||++--..+-+.-+.. +.+ .| +..-|.-
T Consensus 74 -Vl~~-------~~a~~a~~aGA~FivsP~~~~~vi~~---a~~-~~------------------------i~~iPG~-- 115 (212)
T PRK05718 74 -VLNP-------EQLAQAIEAGAQFIVSPGLTPPLLKA---AQE-GP------------------------IPLIPGV-- 115 (212)
T ss_pred -ccCH-------HHHHHHHHcCCCEEECCCCCHHHHHH---HHH-cC------------------------CCEeCCC--
Confidence 3444 34555678999988766666644333 332 11 1111211
Q ss_pred ccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch--HHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhh
Q 014237 318 KKTYQMNPANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQR 394 (428)
Q Consensus 318 RktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y--LDII~~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~iD~~~ 394 (428)
.+..|+ .+ =.+-|||+|=+-|+... ++-|+.+|.-|+ +|+. + .|-++.
T Consensus 116 --------~TptEi-~~---a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~~~~~---p------------tGGV~~-- 166 (212)
T PRK05718 116 --------STPSEL-ML---GMELGLRTFKFFPAEASGGVKMLKALAGPFPDVRFC---P------------TGGISP-- 166 (212)
T ss_pred --------CCHHHH-HH---HHHCCCCEEEEccchhccCHHHHHHHhccCCCCeEE---E------------eCCCCH--
Confidence 133452 22 25789999999999865 799999998884 6665 3 345664
Q ss_pred HHHHHHHHHHHhcccEee
Q 014237 395 VMMESLMCLRRAGADIIL 412 (428)
Q Consensus 395 ~vlEsL~~~kRAGAd~Ii 412 (428)
|.+..+..||+..+.
T Consensus 167 ---~ni~~~l~ag~v~~v 181 (212)
T PRK05718 167 ---ANYRDYLALPNVLCI 181 (212)
T ss_pred ---HHHHHHHhCCCEEEE
Confidence 567778888854443
No 26
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=93.85 E-value=0.54 Score=47.78 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014237 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (428)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~I 239 (428)
.+..+-+.+.|-..|+|-=-+|.+ +=..| .+.--+++ .-|++||+.. ++=||.=+ -.||
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd-~~~~g-g~~Rm~~p--~~I~aIk~~V-~iPVigk~------Righ---------- 85 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD-IRAAG-GVARMADP--KMIEEIMDAV-SIPVMAKA------RIGH---------- 85 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch-HhhcC-CeeecCCH--HHHHHHHHhC-CCCeEEee------hhhH----------
Confidence 566777888888888875446754 33344 33333333 3466888876 66665322 1333
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc---hHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCC
Q 014237 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDG---RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (428)
Q Consensus 240 dND~Tl~~Lak~Als~A~AGADiVAPSDMMDG---RV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fg 316 (428)
.+.|-.+.++|+|+|.=|+-.-- .+..+|. .| ++++|.
T Consensus 86 ---------~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~K~-----~f-~~~fma------------------------ 126 (293)
T PRK04180 86 ---------FVEAQILEALGVDYIDESEVLTPADEEYHIDKW-----DF-TVPFVC------------------------ 126 (293)
T ss_pred ---------HHHHHHHHHcCCCEEeccCCCCchHHHHHHHHH-----Hc-CCCEEc------------------------
Confidence 66788889999999965554322 2333222 23 555553
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCceEEec--------------------------------------CCCchHHHH
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGADILLVK--------------------------------------PGLPYLDVI 358 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGADilMVK--------------------------------------Pal~YLDII 358 (428)
|-+|..||+|. ++||||||-.| .-.+-+|+|
T Consensus 127 -------d~~~l~EAlra----i~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL 195 (293)
T PRK04180 127 -------GARNLGEALRR----IAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELV 195 (293)
T ss_pred -------cCCCHHHHHHH----HHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHH
Confidence 34588888887 56999999999 133567999
Q ss_pred HHHHhhCCCCeE
Q 014237 359 RLLRDKYPLPIA 370 (428)
Q Consensus 359 ~~vk~~~~lPva 370 (428)
+++++..++||.
T Consensus 196 ~ei~~~~~iPVV 207 (293)
T PRK04180 196 KEVAELGRLPVV 207 (293)
T ss_pred HHHHHhCCCCEE
Confidence 999999999985
No 27
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.79 E-value=1.1 Score=42.07 Aligned_cols=163 Identities=21% Similarity=0.255 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
.+.+..+.+.+.|++.+-+ + + ...++.+|+. .++-|+. .|--|- ++.
T Consensus 28 ~i~~~a~~~~~~G~~~~~~-~------------------~--~~~~~~i~~~-~~iPil~-----~~~~~~------~~~ 74 (219)
T cd04729 28 IMAAMALAAVQGGAVGIRA-N------------------G--VEDIRAIRAR-VDLPIIG-----LIKRDY------PDS 74 (219)
T ss_pred HHHHHHHHHHHCCCeEEEc-C------------------C--HHHHHHHHHh-CCCCEEE-----EEecCC------CCC
Confidence 3778888899999976442 1 1 1467777765 4554433 111110 001
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC----c-hHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCC
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD----G-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD----G-RV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sa 312 (428)
.+.-+++.+ +.-..+++|||+|-+..-.. | .+..+-+.+.+.| ++.++.
T Consensus 75 ~~~ig~~~~----~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g--~~~iiv-------------------- 128 (219)
T cd04729 75 EVYITPTIE----EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY--NCLLMA-------------------- 128 (219)
T ss_pred CceeCCCHH----HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh--CCeEEE--------------------
Confidence 111122333 44556789999998843332 2 7777888888887 566652
Q ss_pred CCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCC----------CchHHHHHHHHhhCCCCeEEEEechHHHHHH
Q 014237 313 PRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPG----------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIK 382 (428)
Q Consensus 313 p~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPa----------l~YLDII~~vk~~~~lPvaaYqVSGEYaMIk 382 (428)
++.+.+|+.+. .+.|+|++.+.+. .+=++.++++++.+++|+.+ ++
T Consensus 129 -----------~v~t~~ea~~a----~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia--~G------- 184 (219)
T cd04729 129 -----------DISTLEEALNA----AKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIA--EG------- 184 (219)
T ss_pred -----------ECCCHHHHHHH----HHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEE--eC-------
Confidence 12355665333 3469999987542 24479999999999999875 22
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 383 AGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 383 aAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
|.-+. |.+..+.++|||.|+-
T Consensus 185 -----GI~~~-----~~~~~~l~~GadgV~v 205 (219)
T cd04729 185 -----RINSP-----EQAAKALELGADAVVV 205 (219)
T ss_pred -----CCCCH-----HHHHHHHHCCCCEEEE
Confidence 22233 3344555679998874
No 28
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.44 E-value=0.58 Score=49.98 Aligned_cols=117 Identities=17% Similarity=0.201 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eecccC----CCCCCccee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDP----YSSDGHDGI 232 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit-DVcLc~----YTshGHcGi 232 (428)
+..+.++.+++.|++.|.|-- .+. . +-.+...|+.||++|||+.||+ ||+--+ --.-|.|+|
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~----a~~----~-----~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v 293 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDT----AHG----H-----QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIV 293 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEec----cCC----c-----cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEE
Confidence 467889999999999977622 211 1 3457789999999999999999 776321 113466665
Q ss_pred ecC--CC-----ccccH---HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCcee
Q 014237 233 VRE--DG-----VIMND---ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSI 290 (428)
Q Consensus 233 l~~--~g-----~IdND---~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~I 290 (428)
--. .| .+... ..+..+.+.|-.-.+.|..+||=-.+... +-|.++|. .|-.-|.+
T Consensus 294 ~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~--~~~~~al~-~ga~~v~~ 358 (479)
T PRK07807 294 KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHP--RDVALALA-AGASNVMI 358 (479)
T ss_pred EECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCH--HHHHHHHH-cCCCeeec
Confidence 300 01 11111 22333333333333457777664444332 56777775 56544433
No 29
>PRK15063 isocitrate lyase; Provisional
Probab=92.99 E-value=2.3 Score=45.35 Aligned_cols=107 Identities=20% Similarity=0.228 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCC--CccccCCCCCChHHHHHHHHhchhcCCceEEe
Q 014237 271 GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG--DKKTYQMNPANYREALVEAQADESEGADILLV 348 (428)
Q Consensus 271 GRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fg--DRktYQmdpaN~~EAlrE~~lDi~EGADilMV 348 (428)
.||.|+|.+-|..|- ++-|++-+=--+..+--.==|--+-..-.| .+..|-+--...++||..+..=.+ |||+|.+
T Consensus 206 ~kL~AAr~A~d~~g~-~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~ 283 (428)
T PRK15063 206 RKLVAARLAADVMGV-PTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWC 283 (428)
T ss_pred HHHHHHHHHHHhcCC-CeEEEEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEe
Confidence 467788888888885 477776543222211100000000000012 233322223358999998886555 9999999
Q ss_pred cCCCchHHHHHHHHhhCCC--C--eEEEEechHHH
Q 014237 349 KPGLPYLDVIRLLRDKYPL--P--IAAYQVSGEYS 379 (428)
Q Consensus 349 KPal~YLDII~~vk~~~~l--P--vaaYqVSGEYa 379 (428)
..+++=++-++++.+.... | +.+|+-|--+.
T Consensus 284 Et~~~d~ee~~~fa~~v~~~~P~~~layn~sPsfn 318 (428)
T PRK15063 284 ETSTPDLEEARRFAEAIHAKFPGKLLAYNCSPSFN 318 (428)
T ss_pred CCCCCCHHHHHHHHHhhcccCccceeecCCCCCcc
Confidence 9889999999999988754 8 99999888776
No 30
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=92.92 E-value=0.28 Score=48.26 Aligned_cols=226 Identities=18% Similarity=0.189 Sum_probs=128.2
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC------eEEEeeecccCCCCCC
Q 014237 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD------LVIYTDVALDPYSSDG 228 (428)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pd------l~VitDVcLc~YTshG 228 (428)
+++.++.+ -++.|-.-|.- |+.-+...+ +.|-+...-..+..+|++..|++..+ ..|..++- ||..+=
T Consensus 41 ~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~-~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiG--P~ga~l 117 (305)
T PF02574_consen 41 ELVRQIHRDYLEAGADIITTNTYQASRERLK-EYGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIG--PYGAYL 117 (305)
T ss_dssp HHHHHHHHHHHHHT-SEEEEC-TT-SHHHHG-GGT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE----S---
T ss_pred HHHHHHHHHHHHCCCCeEEecCCcCchhhhh-hcCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEcc--cccccc
Confidence 35555554 67889875554 664222122 22222111146777888888877655 67887765 222111
Q ss_pred ccee-ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCce-eechhhhhccccccch
Q 014237 229 HDGI-VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVS-IMSYTAKYASSFYGPF 305 (428)
Q Consensus 229 HcGi-l~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~-IMSYsaKyASafYGPF 305 (428)
+ |- ...++.+.-|+-.+...+|+-.++++|+|++.=--|.+ -.+.++.+++.+ +.+.+ ++|.+.+=...
T Consensus 118 ~-g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~--~~~~p~~is~~~~~~~~----- 189 (305)
T PF02574_consen 118 S-GSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKE--VTGLPVWISFSCKDSGR----- 189 (305)
T ss_dssp ------CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHH--HHHCCSSEEE-EEEEES-----
T ss_pred h-hhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHh--hhhhhceeccchhhhcc-----
Confidence 1 11 12234455667788888999999999999999887776 567888888888 22222 33555431111
Q ss_pred hhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEec--CCCchHHHHHHHHhhC-CCCeEEEEechHHHHHH
Q 014237 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVK--PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIK 382 (428)
Q Consensus 306 RdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK--Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMIk 382 (428)
+.| .=++...-+.+.+....+..|+|.++|- ........|.+.+..+ ++|+.+|=-||+--..-
T Consensus 190 ---------l~~----g~~~~~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~~~~l~~~~~~~~~~~l~vyPNsG~~~~~~ 256 (305)
T PF02574_consen 190 ---------LRD----GTSLEDAVQVIDELLRALPPGPDAIGVNCTSPPEIMKALLELMSATHDIPLIVYPNSGEPYDVG 256 (305)
T ss_dssp ----------TC----TTBCTTSHHHHHHHHHHHCTT-SEEEEESSS-HHHHHHHHHHHHHHT-SEEEEE--SBS-TTSS
T ss_pred ---------ccC----CCCHHHHHHHHHHHHHHhhhhhheEEcCCCCcHHHHhHHHHHHhccCCceEEEecCCCCCcccc
Confidence 111 1123344445555544557899999997 4444566666666664 89999998899766554
Q ss_pred HHHHCCCCchhhHHHH----HHHHHHHhcccEe
Q 014237 383 AGGALKMIDEQRVMME----SLMCLRRAGADII 411 (428)
Q Consensus 383 aAa~~G~iD~~~~vlE----sL~~~kRAGAd~I 411 (428)
.+|......+-+ .+..+.++|+.+|
T Consensus 257 ----~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 285 (305)
T PF02574_consen 257 ----KVWSETPEDFAPEWAEFVKEWVEAGARII 285 (305)
T ss_dssp ----GGSTTTTTSHGGG-HHHHHHHHHHHHCEE
T ss_pred ----cccccchhhhHHHHHHHHHHHHHhCCEEE
Confidence 667654444433 8888899998665
No 31
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=92.79 E-value=4.2 Score=42.74 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=87.3
Q ss_pred ccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014237 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (428)
Q Consensus 188 ~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD 267 (428)
.|.+-+-..| ...|+.||+.+|+..|.+|.-+. | -..|+ +-..+++|||++.=..
T Consensus 204 vG~~L~~~~G--~~iVk~Lr~~~~~~~I~~DLK~~-----------D------i~~~v------v~~~a~aGAD~vTVH~ 258 (391)
T PRK13307 204 AGTPLIKKFG--LEVISKIREVRPDAFIVADLKTL-----------D------TGNLE------ARMAADATADAVVISG 258 (391)
T ss_pred ECHHHHHHhC--HHHHHHHHHhCCCCeEEEEeccc-----------C------hhhHH------HHHHHhcCCCEEEEec
Confidence 4555555556 47899999999999999998763 1 22333 3346799999887664
Q ss_pred CCC-chHHHHHHHHHHCCCCCcee-echhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCce
Q 014237 268 MMD-GRVGAIRAALDAEGFQHVSI-MSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345 (428)
Q Consensus 268 MMD-GRV~aIR~aLD~~Gf~~v~I-MSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADi 345 (428)
-.. ..+.+..++..+.|. .+.| | ++|.+..|.+++. ..|.|+
T Consensus 259 ea~~~ti~~ai~~akk~Gi-kvgVD~-------------------------------lnp~tp~e~i~~l----~~~vD~ 302 (391)
T PRK13307 259 LAPISTIEKAIHEAQKTGI-YSILDM-------------------------------LNVEDPVKLLESL----KVKPDV 302 (391)
T ss_pred cCCHHHHHHHHHHHHHcCC-EEEEEE-------------------------------cCCCCHHHHHHHh----hCCCCE
Confidence 332 234555555555562 3333 2 2345666666654 557887
Q ss_pred EEecC----C--CchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 346 LLVKP----G--LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 346 lMVKP----a--l~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
|++=. + .+-++-|+++|+.. ++++ .|+ |-|. .|.+..++.+|||++|-
T Consensus 303 Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I---~Vd------------GGI~-----~eti~~l~~aGADivVV 357 (391)
T PRK13307 303 VELHRGIDEEGTEHAWGNIKEIKKAGGKILV---AVA------------GGVR-----VENVEEALKAGADILVV 357 (391)
T ss_pred EEEccccCCCcccchHHHHHHHHHhCCCCcE---EEE------------CCcC-----HHHHHHHHHcCCCEEEE
Confidence 76553 1 12345667777642 3443 233 3444 34566778899998763
No 32
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.71 E-value=2.1 Score=43.20 Aligned_cols=168 Identities=24% Similarity=0.293 Sum_probs=101.6
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeec
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVA 220 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~KD~~Gs~A~~~~g~v-----~rAIr~iK~~~Pdl~VitDVc 220 (428)
+||+| |. + ..+-+.+.|.+++.+=|- +.. .+..+-+-|++ ...++.|.+.. ++=||+|.
T Consensus 21 ~p~~~----Da-~--SAri~e~~Gf~ai~~Sg~~~a~------~~lG~PD~g~l~~~e~~~~~~~I~~~~-~iPviaD~- 85 (292)
T PRK11320 21 IVGTI----NA-Y--HALLAERAGFKAIYLSGGGVAA------ASLGLPDLGITTLDDVLIDVRRITDAC-DLPLLVDI- 85 (292)
T ss_pred ecCCC----CH-H--HHHHHHHcCCCEEEeCHHHHHh------HhcCCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEC-
Confidence 78883 31 2 224455679998877332 110 11122222443 35566666554 34466664
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC--------CCCch--------HHHHHHHHHHCC
Q 014237 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD--------MMDGR--------VGAIRAALDAEG 284 (428)
Q Consensus 221 Lc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD--------MMDGR--------V~aIR~aLD~~G 284 (428)
++|+= |-..+.+.+ -.+.++||--|--.| -+.|+ +..||.+++...
T Consensus 86 --------------d~GyG-~~~~v~r~V---~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~ 147 (292)
T PRK11320 86 --------------DTGFG-GAFNIARTV---KSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART 147 (292)
T ss_pred --------------CCCCC-CHHHHHHHH---HHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc
Confidence 34544 444444443 456788884443333 12232 556666666542
Q ss_pred CCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhh
Q 014237 285 FQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK 364 (428)
Q Consensus 285 f~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~ 364 (428)
=.+.-|++-+--|+. ..-+|||+.+..=.+-|||+|++ |++.-+|-|+++.+.
T Consensus 148 ~~d~~IiARTDa~~~--------------------------~g~deAI~Ra~aY~eAGAD~ifi-~~~~~~~~i~~~~~~ 200 (292)
T PRK11320 148 DPDFVIMARTDALAV--------------------------EGLDAAIERAQAYVEAGADMIFP-EAMTELEMYRRFADA 200 (292)
T ss_pred CCCeEEEEecCcccc--------------------------cCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHHHHHHh
Confidence 256777776443321 12699999999999999999999 789999999999999
Q ss_pred CCCCeEEEEe
Q 014237 365 YPLPIAAYQV 374 (428)
Q Consensus 365 ~~lPvaaYqV 374 (428)
.++|+.+=.+
T Consensus 201 ~~~Pl~~n~~ 210 (292)
T PRK11320 201 VKVPILANIT 210 (292)
T ss_pred cCCCEEEEec
Confidence 9999865333
No 33
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=92.56 E-value=3.1 Score=41.45 Aligned_cols=174 Identities=22% Similarity=0.346 Sum_probs=107.0
Q ss_pred ccCCCCCceeec--hh---hhHHHHHHHHHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE
Q 014237 143 PIGAMPGCYRLG--WR---HGLVQEVAKARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (428)
Q Consensus 143 ~I~SMPGv~r~s--~~---~~l~~~v~~~~~~GI~sv~L--Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~V 215 (428)
..+-|||=.+|+ ++ +..+++++.+.+.|+.+|++ |+-.|= .|+ .+-+-- -.+-+.++.+|+.+ ++
T Consensus 10 HL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py-~~~-~~~etv---aaM~~i~~~v~~~~-~~-- 81 (254)
T PF03437_consen 10 HLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPY-PKR-VGPETV---AAMARIAREVRREV-SV-- 81 (254)
T ss_pred cCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCc-cCC-CCHHHH---HHHHHHHHHHHHhC-CC--
Confidence 346788988876 21 23677788899999999999 443342 222 111111 23446778888876 32
Q ss_pred EeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc-CCCee----------cCCCCCCchHHHHHHHHHHCC
Q 014237 216 YTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA-GADVV----------SPSDMMDGRVGAIRAALDAEG 284 (428)
Q Consensus 216 itDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~A-GADiV----------APSDMMDGRV~aIR~aLD~~G 284 (428)
|| ||--- .-||.+++. .|.| |||.| ++.+.++|+-+.+=+.-..-|
T Consensus 82 -------p~------GVnvL--~nd~~aala--------iA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~ 138 (254)
T PF03437_consen 82 -------PV------GVNVL--RNDPKAALA--------IAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLG 138 (254)
T ss_pred -------CE------Eeeee--cCCCHHHHH--------HHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcC
Confidence 22 43210 114455544 3333 66654 789999998777755555566
Q ss_pred CCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCC----chHHHHHH
Q 014237 285 FQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGL----PYLDVIRL 360 (428)
Q Consensus 285 f~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal----~YLDII~~ 360 (428)
-. |.|+..-.+-+|+ .+......|+.+.+. ...+||-|+|==.. +=++-|++
T Consensus 139 a~-v~ilaDV~~kh~~---------------------~l~~~~~~~~~~~a~--~~~~aDaviVtG~~TG~~~~~~~l~~ 194 (254)
T PF03437_consen 139 AD-VKILADVHVKHSS---------------------PLATRDLEEAAKDAV--ERGGADAVIVTGKATGEPPDPEKLKR 194 (254)
T ss_pred CC-eEEEeeechhhcc---------------------cCCCCCHHHHHHHHH--HhcCCCEEEECCcccCCCCCHHHHHH
Confidence 55 8888765433333 233334556555543 35899999995432 36899999
Q ss_pred HHhhCCCCeEE
Q 014237 361 LRDKYPLPIAA 371 (428)
Q Consensus 361 vk~~~~lPvaa 371 (428)
+|+..++||..
T Consensus 195 vr~~~~~PVlv 205 (254)
T PF03437_consen 195 VREAVPVPVLV 205 (254)
T ss_pred HHhcCCCCEEE
Confidence 99999999985
No 34
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.52 E-value=1.6 Score=44.13 Aligned_cols=164 Identities=19% Similarity=0.251 Sum_probs=97.9
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeee
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDV 219 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~L--Fgvi~~~~KD~~Gs~A~~~~g~v-----~rAIr~iK~~~Pdl~VitDV 219 (428)
+||+| |. + ..+-+.+.|-+++.+ ++..- .+-.+-+-|++ ...++.|.+.. ++=|++|.
T Consensus 20 ~p~v~----Da-~--SArl~e~aGf~ai~~sg~~~~a-------s~lG~pD~g~l~~~e~~~~~~~I~~~~-~lPv~aD~ 84 (294)
T TIGR02319 20 VPSAY----DA-L--SAKVIQQAGFPAVHMTGSGTSA-------SMLGLPDLGFTSVSEQAINAKNIVLAV-DVPVIMDA 84 (294)
T ss_pred eecCc----CH-H--HHHHHHHcCCCEEEecHHHHHH-------HHcCCCCcCCCCHHHHHHHHHHHHhcc-CCCEEEEC
Confidence 78884 31 2 223345669999876 33210 01112222333 35666666665 57777774
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC--------CCCch--------HHHHHHHHHHC
Q 014237 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD--------MMDGR--------VGAIRAALDAE 283 (428)
Q Consensus 220 cLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD--------MMDGR--------V~aIR~aLD~~ 283 (428)
++|+=+... + .+..-.+.+|||--|--.| -++|+ +..||.+.+..
T Consensus 85 ---------------dtGyG~~~~-v---~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~ 145 (294)
T TIGR02319 85 ---------------DAGYGNAMS-V---WRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAR 145 (294)
T ss_pred ---------------CCCCCCcHH-H---HHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhc
Confidence 233322222 3 3334456788884443333 22332 45555555543
Q ss_pred CCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh
Q 014237 284 GFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD 363 (428)
Q Consensus 284 Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~ 363 (428)
.=.++-|++-+=-+. ....+|||+.+..=.+-|||+|+| |++.-+|-|+++.+
T Consensus 146 ~~~d~~I~ARTDa~~--------------------------~~g~deaI~Ra~aY~eAGAD~ifi-~~~~~~~ei~~~~~ 198 (294)
T TIGR02319 146 EDEDFTIIARTDARE--------------------------SFGLDEAIRRSREYVAAGADCIFL-EAMLDVEEMKRVRD 198 (294)
T ss_pred cCCCeEEEEEecccc--------------------------cCCHHHHHHHHHHHHHhCCCEEEe-cCCCCHHHHHHHHH
Confidence 325667766533210 013589999999999999999999 89999999999999
Q ss_pred hCCCCeEE
Q 014237 364 KYPLPIAA 371 (428)
Q Consensus 364 ~~~lPvaa 371 (428)
..+.|+.+
T Consensus 199 ~~~~P~~~ 206 (294)
T TIGR02319 199 EIDAPLLA 206 (294)
T ss_pred hcCCCeeE
Confidence 99999854
No 35
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.40 E-value=1.8 Score=40.55 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
.+.+.++.+.+.|+..+.+ . + ...++.+|+.. ++=|+-=++=+.|. .-++- ++
T Consensus 24 ~~~~~a~a~~~~G~~~~~~----~---------------~--~~~i~~i~~~~-~~Pil~~~~~d~~~----~~~~~-~~ 76 (221)
T PRK01130 24 IMAAMALAAVQGGAVGIRA----N---------------G--VEDIKAIRAVV-DVPIIGIIKRDYPD----SEVYI-TP 76 (221)
T ss_pred HHHHHHHHHHHCCCeEEEc----C---------------C--HHHHHHHHHhC-CCCEEEEEecCCCC----CCceE-CC
Confidence 4677788889999877664 1 0 46778887753 33222111111111 01121 11
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC----C-chHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCC
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM----D-GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM----D-GRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sa 312 (428)
+. +++-...++|||+|.|.-=+ + ..+..+.+.+.+. .++.++.-
T Consensus 77 ------~~----~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~--~~i~vi~~------------------- 125 (221)
T PRK01130 77 ------TL----KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY--PGQLLMAD------------------- 125 (221)
T ss_pred ------CH----HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC--CCCeEEEe-------------------
Confidence 22 23344568999999863322 1 4555666666663 34444421
Q ss_pred CCCCCccccCCCCCChHHHHHHHHhchhcCCceEEec----------CCCchHHHHHHHHhhCCCCeEEEEechHHHHHH
Q 014237 313 PRFGDKKTYQMNPANYREALVEAQADESEGADILLVK----------PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIK 382 (428)
Q Consensus 313 p~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK----------Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMIk 382 (428)
-.+.+|+. .=.+.|+|+|.+- +...-++.++++++.+++|+.+ .+|
T Consensus 126 ------------v~t~ee~~----~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia--~GG------ 181 (221)
T PRK01130 126 ------------CSTLEEGL----AAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIA--EGR------ 181 (221)
T ss_pred ------------CCCHHHHH----HHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEE--ECC------
Confidence 01455553 2256799999773 3445589999999999999875 322
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 383 AGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 383 aAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
|... |.+..+..+|||.|+-
T Consensus 182 -------I~t~----~~~~~~l~~GadgV~i 201 (221)
T PRK01130 182 -------INTP----EQAKKALELGAHAVVV 201 (221)
T ss_pred -------CCCH----HHHHHHHHCCCCEEEE
Confidence 3211 3344556678888763
No 36
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.90 E-value=2.7 Score=40.64 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=43.3
Q ss_pred hhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc--hhhHHHHHHHHHHHhcccEeeh
Q 014237 339 ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID--EQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 339 i~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD--~~~~vlEsL~~~kRAGAd~IiT 413 (428)
.+.|||+|-+.-. .=++.++++.+..++||.+ .|.++ ..+-++|.+..+.++||+.|..
T Consensus 166 ~~~GADyikt~~~-~~~~~l~~~~~~~~iPVva---------------~GGi~~~~~~~~~~~i~~~~~aGa~Gia~ 226 (258)
T TIGR01949 166 AELGADIVKTPYT-GDIDSFRDVVKGCPAPVVV---------------AGGPKTNSDREFLQMIKDAMEAGAAGVAV 226 (258)
T ss_pred HHHCCCEEeccCC-CCHHHHHHHHHhCCCcEEE---------------ecCCCCCCHHHHHHHHHHHHHcCCcEEeh
Confidence 4699999998522 2368999999988999965 35565 3356678888888899987654
No 37
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=91.69 E-value=2.9 Score=41.12 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=75.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 014237 234 REDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~-AGADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGP 304 (428)
++||.|| -+.++.|++. +.+ +|+|-|.+.+.+ +=|...++.+.+..+ .+++||.=..
T Consensus 16 ~~dg~iD-~~~~~~li~~---l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagvg--------- 81 (293)
T PRK04147 16 DEDGQID-EQGLRRLVRF---NIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQVG--------- 81 (293)
T ss_pred CCCCCcC-HHHHHHHHHH---HHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecCC---------
Confidence 4567776 4455555553 445 999998877653 346777777777765 5677765321
Q ss_pred hhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEech
Q 014237 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 376 (428)
Q Consensus 305 FRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 376 (428)
-.+.+|+++.+..=.+-|||.+||=|-..| ++=.+++.+.+++||..||..+
T Consensus 82 --------------------~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~ 140 (293)
T PRK04147 82 --------------------SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPA 140 (293)
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 127888888888778899999999885432 3345567778899999999653
No 38
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=91.48 E-value=2.6 Score=41.78 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=103.5
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC-----HHHHHHHHHHHCCCeEEEeeec
Q 014237 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL-----VPRTIWLLKDRYPDLVIYTDVA 220 (428)
Q Consensus 146 SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~-----v~rAIr~iK~~~Pdl~VitDVc 220 (428)
.||++|=... .+-+.+.|+..++. |- ...-. ...+.+-+. +...++.+.+..+.-+|++|.
T Consensus 15 ~~~~ayD~~s-------A~l~e~aG~d~i~v-Gd--s~~~~---~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~- 80 (254)
T cd06557 15 VMLTAYDYPT-------AKLADEAGVDVILV-GD--SLGMV---VLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADM- 80 (254)
T ss_pred EEEeCCCHHH-------HHHHHHcCCCEEEE-CH--HHHHH---HcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeC-
Confidence 6888864432 23344569998863 41 10000 011222222 335667777777877788999
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCCC---CCceeechhhh
Q 014237 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEGF---QHVSIMSYTAK 296 (428)
Q Consensus 221 Lc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~-AGADiVAPSDMMDGRV~aIR~aLD~~Gf---~~v~IMSYsaK 296 (428)
||.+.+ + |.+...+-++..-+ +||+.|=-.|= +-.+..||.+- ++|. -|+++..=+..
T Consensus 81 --~fg~y~-----------~---~~~~av~~a~r~~~~aGa~aVkiEd~-~~~~~~I~al~-~agipV~gHiGL~pq~~~ 142 (254)
T cd06557 81 --PFGSYQ-----------T---SPEQALRNAARLMKEAGADAVKLEGG-AEVAETIRALV-DAGIPVMGHIGLTPQSVN 142 (254)
T ss_pred --CCCccc-----------C---CHHHHHHHHHHHHHHhCCeEEEEcCc-HHHHHHHHHHH-HcCCCeeccccccceeee
Confidence 663221 1 12333444444444 99999988773 12455555444 5663 45666666554
Q ss_pred hccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEE
Q 014237 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY 372 (428)
Q Consensus 297 yASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaY 372 (428)
+-..|...=|... ..+++++.+..=.+-|||+|.+ |+.+ -++++++.++.++|+...
T Consensus 143 ~~gg~~~~grt~~-----------------~a~~~i~ra~a~~~AGA~~i~l-E~v~-~~~~~~i~~~v~iP~igi 199 (254)
T cd06557 143 QLGGYKVQGKTEE-----------------EAERLLEDALALEEAGAFALVL-ECVP-AELAKEITEALSIPTIGI 199 (254)
T ss_pred ccCCceeccCCHH-----------------HHHHHHHHHHHHHHCCCCEEEE-cCCC-HHHHHHHHHhCCCCEEEe
Confidence 4433322111111 1478888888888899999877 5556 489999999999999854
No 39
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.42 E-value=3.6 Score=41.47 Aligned_cols=168 Identities=24% Similarity=0.299 Sum_probs=99.4
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC-----HHHHHHHHHHHCCCeEEEeeecc
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL-----VPRTIWLLKDRYPDLVIYTDVAL 221 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~-----v~rAIr~iK~~~Pdl~VitDVcL 221 (428)
+||+| |. + ..+-+.+.|.+++.+=|. .-+ ++..+-+-|+ +...++.|-+.. ++=||+|.
T Consensus 17 ~p~~~----Da-~--SAri~e~aGf~Ai~~sg~-~~a-----~~lG~pD~g~lt~~e~~~~~~~I~~~~-~iPviaD~-- 80 (285)
T TIGR02317 17 IPGAI----NA-M--AALLAERAGFEAIYLSGA-AVA-----ASLGLPDLGITTLDEVAEDARRITRVT-DLPLLVDA-- 80 (285)
T ss_pred eCCCC----CH-H--HHHHHHHcCCCEEEEcHH-HHH-----HhCCCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEC--
Confidence 78883 31 2 223455679999888332 000 1112222233 235566666554 45577774
Q ss_pred cCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC--------CCCch--------HHHHHHHHHHCCC
Q 014237 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD--------MMDGR--------VGAIRAALDAEGF 285 (428)
Q Consensus 222 c~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD--------MMDGR--------V~aIR~aLD~~Gf 285 (428)
++|+=+ -..+ .+..-.+.++||.-|--.| -|.|+ +..||.+.+...=
T Consensus 81 -------------d~GyG~-~~~v---~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~ 143 (285)
T TIGR02317 81 -------------DTGFGE-AFNV---ARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRD 143 (285)
T ss_pred -------------CCCCCC-HHHH---HHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccC
Confidence 233322 2222 3344456788884444333 12232 5556656655432
Q ss_pred CCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhC
Q 014237 286 QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY 365 (428)
Q Consensus 286 ~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~ 365 (428)
.++-|++-+--|.. ...+|||+.+..=.+-|||+|+| |++.-+|-|+++.+..
T Consensus 144 ~d~~IiARTDa~~~--------------------------~g~deAI~Ra~ay~~AGAD~vfi-~g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 144 EDFVIIARTDARAV--------------------------EGLDAAIERAKAYVEAGADMIFP-EALTSLEEFRQFAKAV 196 (285)
T ss_pred CCEEEEEEcCcccc--------------------------cCHHHHHHHHHHHHHcCCCEEEe-CCCCCHHHHHHHHHhc
Confidence 56777776543321 12689999999989999999999 7888999999999999
Q ss_pred CCCeEEEEe
Q 014237 366 PLPIAAYQV 374 (428)
Q Consensus 366 ~lPvaaYqV 374 (428)
+.|+.+=-+
T Consensus 197 ~~Pl~~n~~ 205 (285)
T TIGR02317 197 KVPLLANMT 205 (285)
T ss_pred CCCEEEEec
Confidence 999854333
No 40
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=91.35 E-value=7.1 Score=39.05 Aligned_cols=224 Identities=21% Similarity=0.186 Sum_probs=130.4
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC-----eEEEeeecccCCCCCCc
Q 014237 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-----LVIYTDVALDPYSSDGH 229 (428)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pd-----l~VitDVcLc~YTshGH 229 (428)
+++.++.+ -++.|-.-|.- |+.-+...+ ..|-+...-..+..+|++..|+...+ ..|..++ -||...=+
T Consensus 46 e~V~~vH~~yl~AGadiI~TnTy~a~~~~l~-~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsi--GP~g~~l~ 122 (304)
T PRK09485 46 ELIYQVHLDYFRAGADCAITASYQATFQGFA-ARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSV--GPYGAYLA 122 (304)
T ss_pred HHHHHHHHHHHHhCCCEEEeeccccCHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEec--CCcccccC
Confidence 45555544 67889876443 553221111 12211111245777888888877643 6777775 34433222
Q ss_pred ceee-cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceee-chhhhhccccccchh
Q 014237 230 DGIV-REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIM-SYTAKYASSFYGPFR 306 (428)
Q Consensus 230 cGil-~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~IM-SYsaKyASafYGPFR 306 (428)
.|-- ..+..++.++-.+...+|+-.+.++|+|++.=--|.+ -.+.++.+++.+.. .+.+++ |.+ |.
T Consensus 123 ~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~-~~~pv~is~~----------~~ 191 (304)
T PRK09485 123 DGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEF-PGVPAWLSFT----------LR 191 (304)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhc-CCCcEEEEEE----------eC
Confidence 2211 0011256777788889999999999999999887877 33445555555331 233333 222 11
Q ss_pred hhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch--HHHHHHHHhhCCCCeEEEEechHHHHHHHH
Q 014237 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAG 384 (428)
Q Consensus 307 dAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y--LDII~~vk~~~~lPvaaYqVSGEYaMIkaA 384 (428)
+ ...-++-....+++..+. + ..++|.|++==..|. +.+++++++..++|+.+|-=+|+.- ..
T Consensus 192 ~-----------~g~l~~G~~~~~~~~~l~-~-~~~~~~iGiNC~~p~~~~~~l~~~~~~~~~pl~~~PNaG~~~---~~ 255 (304)
T PRK09485 192 D-----------GTHISDGTPLAEAAALLA-A-SPQVVAVGVNCTAPELVTAAIAALRAVTDKPLVVYPNSGEVY---DA 255 (304)
T ss_pred C-----------CCcCCCCCCHHHHHHHHh-c-CCCceEEEecCCCHHHHHHHHHHHHhccCCcEEEECCCCCCC---CC
Confidence 1 123344456778877774 1 235899998655443 5666677666789999998888732 12
Q ss_pred HHCCCCchhh--HHHHHHHHHHHhcccEe
Q 014237 385 GALKMIDEQR--VMMESLMCLRRAGADII 411 (428)
Q Consensus 385 a~~G~iD~~~--~vlEsL~~~kRAGAd~I 411 (428)
....|.+... .+.|.+..+...|+.+|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 284 (304)
T PRK09485 256 VTKTWHGPADDASLGELAPEWYAAGARLI 284 (304)
T ss_pred CCCcccCCCChHHHHHHHHHHHHcCCeEE
Confidence 3445654333 46677777777888765
No 41
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=90.95 E-value=8.9 Score=38.48 Aligned_cols=94 Identities=13% Similarity=0.269 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv-----------i~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YT 225 (428)
...+.++.+.+.|...|-|-+- ..+...|+.|..-.|.--++...++.|++.++ |..|..|+...+|.
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 4667778889999999988531 12345677787767777788899999999994 89999998865542
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 014237 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (428)
Q Consensus 226 shGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAP 265 (428)
. +| .+-++++ +.+-...++|.|+|.=
T Consensus 235 ~---------~g-~~~~e~~----~ia~~Le~~gvd~iev 260 (336)
T cd02932 235 E---------GG-WDLEDSV----ELAKALKELGVDLIDV 260 (336)
T ss_pred C---------CC-CCHHHHH----HHHHHHHHcCCCEEEE
Confidence 1 12 2223333 3333445789998843
No 42
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=90.78 E-value=11 Score=35.37 Aligned_cols=182 Identities=18% Similarity=0.184 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
++.+.++++.+.|..+|.+-+ |.+.++-+.++.. +.+++-.+.| |..|= .
T Consensus 22 d~~~~~~~~~~~g~~av~v~~------------------~~~~~~~~~~~~~-~~~i~~~~~~----~~i~~---p---- 71 (235)
T cd00958 22 DPEETVKLAAEGGADAVALTK------------------GIARAYGREYAGD-IPLIVKLNGS----TSLSP---K---- 71 (235)
T ss_pred CHHHHHHHHHhcCCCEEEeCh------------------HHHHhcccccCCC-CcEEEEECCC----CCCCC---C----
Confidence 589999999999999988843 3333333333211 1233333322 11110 0
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee---cCCCCCC-----chHHHHHHHHHHCCCCCceeechhhhhccccccchhhhh
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVV---SPSDMMD-----GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiV---APSDMMD-----GRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa 309 (428)
..+.+.+..+.-...++|||.| ..-...+ =.+.++++.-++.|.. +.|-.|. +|
T Consensus 72 ----~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~-~iie~~~-------~g------ 133 (235)
T cd00958 72 ----DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLP-LIAWMYP-------RG------ 133 (235)
T ss_pred ----CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCC-EEEEEec-------cC------
Confidence 1122333333344568899865 2211111 1677777776666653 4442332 22
Q ss_pred cCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC
Q 014237 310 DSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 389 (428)
Q Consensus 310 ~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~ 389 (428)
...++. +++....++.+.+ .+.|||+|-+.+- .=++.++++.+..++|+.+ + |.
T Consensus 134 ---~~~~~~----~~~~~i~~~~~~a---~~~GaD~Ik~~~~-~~~~~~~~i~~~~~~pvv~---~------------GG 187 (235)
T cd00958 134 ---PAVKNE----KDPDLIAYAARIG---AELGADIVKTKYT-GDAESFKEVVEGCPVPVVI---A------------GG 187 (235)
T ss_pred ---CcccCc----cCHHHHHHHHHHH---HHHCCCEEEecCC-CCHHHHHHHHhcCCCCEEE---e------------CC
Confidence 222331 2333333333333 3679999999532 2378999999999999743 2 33
Q ss_pred C--chhhHHHHHHHHHHHhcccEeeh
Q 014237 390 I--DEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 390 i--D~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+ +..+-.+|.+..+.++||+.|..
T Consensus 188 ~~~~~~~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 188 PKKDSEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 2 22334588888899999998753
No 43
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=90.76 E-value=1.7 Score=41.36 Aligned_cols=121 Identities=19% Similarity=0.133 Sum_probs=73.2
Q ss_pred CchHHHHHHHHHHCCCC-------CceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCCh----HHHHHHHHhc
Q 014237 270 DGRVGAIRAALDAEGFQ-------HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANY----REALVEAQAD 338 (428)
Q Consensus 270 DGRV~aIR~aLD~~Gf~-------~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~----~EAlrE~~lD 338 (428)
.+-+..+.+.|++.|+. +|.|.|+....-- .+|... |.+ +..|.+...+. ++.+..+
T Consensus 125 ~~~~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~----~~~~~~---p~~--~~~~l~~~~~~~~~~~~~~~~~--- 192 (256)
T cd08601 125 PGMEEKLLATLDKYGLLTDNLKNGQVIIQSFSKESLK----KLHQLN---PNI--PLVQLLWYGEGAETYDKWLDEI--- 192 (256)
T ss_pred CCHHHHHHHHHHHcCCCcccCCCCCEEEecCCHHHHH----HHHHhC---CCC--cEEEEeccCcccccchhHHHHH---
Confidence 45567788888888874 5777776554221 133332 321 23344433322 2333333
Q ss_pred hhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHH
Q 014237 339 ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQ 418 (428)
Q Consensus 339 i~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e 418 (428)
..+++.+-+.-....-+++..+++. +++|.+|-|-. .|.+..+.+.|+|.|||-+-..
T Consensus 193 -~~~~~~~~~~~~~~~~~~v~~~~~~-g~~v~~wTvn~--------------------~~~~~~l~~~Gvd~IiTD~p~~ 250 (256)
T cd08601 193 -KEYAIGIGPSIADADPWMVHLIHKK-GLLVHPYTVNE--------------------KADMIRLINWGVDGMFTNYPDR 250 (256)
T ss_pred -HhcCeEeCCchhhcCHHHHHHHHHC-CCEEEEEecCC--------------------HHHHHHHHhcCCCEEEeCCHHH
Confidence 3367665443333345778888774 79999998832 3455567778999999999988
Q ss_pred HHHHHh
Q 014237 419 AARCLC 424 (428)
Q Consensus 419 ~a~wL~ 424 (428)
+.++|+
T Consensus 251 ~~~~~~ 256 (256)
T cd08601 251 LKEVLK 256 (256)
T ss_pred HHHhhC
Confidence 777763
No 44
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.67 E-value=15 Score=40.73 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=112.6
Q ss_pred EEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC
Q 014237 133 LFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212 (428)
Q Consensus 133 lFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pd 212 (428)
|.|.|..=+.- ...++-.|++.+ +.+..++.+-+.|+.++=..|- ..-|. + .-+-.+.+ ...+|.|++..|+
T Consensus 5 v~i~DtTLRDG-~Qs~~~tr~~~~-d~l~ia~~ld~~G~~siE~~GG---atf~~-~-~~~~~e~p-~e~lr~l~~~~~~ 76 (593)
T PRK14040 5 LAITDVVLRDA-HQSLFATRLRLD-DMLPIAAKLDKVGYWSLESWGG---ATFDA-C-IRFLGEDP-WERLRELKKAMPN 76 (593)
T ss_pred cEEEECCcccc-cccccccccCHH-HHHHHHHHHHHcCCCEEEecCC---cchhh-h-ccccCCCH-HHHHHHHHHhCCC
Confidence 45555431111 234545588886 5999999999999999988542 11111 0 00111122 5789999999998
Q ss_pred eEEE--ee----ecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHC
Q 014237 213 LVIY--TD----VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAE 283 (428)
Q Consensus 213 l~Vi--tD----VcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM---DGRV~aIR~aLD~~ 283 (428)
.-+. +- |..++| -|..++...+.| +++|.|+|--.|-+ +.-..+|+.+-+ .
T Consensus 77 ~~lqml~Rg~n~vg~~~y----------------pddvv~~~v~~a---~~~Gid~~rifd~lnd~~~~~~ai~~ak~-~ 136 (593)
T PRK14040 77 TPQQMLLRGQNLLGYRHY----------------ADDVVERFVERA---VKNGMDVFRVFDAMNDPRNLETALKAVRK-V 136 (593)
T ss_pred CeEEEEecCcceeccccC----------------cHHHHHHHHHHH---HhcCCCEEEEeeeCCcHHHHHHHHHHHHH-c
Confidence 5442 22 222222 133344444443 57899987655443 455556666654 5
Q ss_pred CCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch------HHH
Q 014237 284 GFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY------LDV 357 (428)
Q Consensus 284 Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y------LDI 357 (428)
|+....-++|+. +|.. ++.-..+..+++ .+-|||.|-+|=-.-. -++
T Consensus 137 G~~~~~~i~yt~----------------~p~~--------~~~~~~~~a~~l---~~~Gad~i~i~Dt~G~l~P~~~~~l 189 (593)
T PRK14040 137 GAHAQGTLSYTT----------------SPVH--------TLQTWVDLAKQL---EDMGVDSLCIKDMAGLLKPYAAYEL 189 (593)
T ss_pred CCeEEEEEEEee----------------CCcc--------CHHHHHHHHHHH---HHcCCCEEEECCCCCCcCHHHHHHH
Confidence 764444456642 1110 122223333333 2459999988743322 579
Q ss_pred HHHHHhhCCCCeEEEEechHHHH----HHHHHHCC
Q 014237 358 IRLLRDKYPLPIAAYQVSGEYSM----IKAGGALK 388 (428)
Q Consensus 358 I~~vk~~~~lPvaaYqVSGEYaM----IkaAa~~G 388 (428)
|+.+|+.+++|+. +|----+-| ..+|.++|
T Consensus 190 v~~lk~~~~~pi~-~H~Hnt~GlA~An~laAieAG 223 (593)
T PRK14040 190 VSRIKKRVDVPLH-LHCHATTGLSTATLLKAIEAG 223 (593)
T ss_pred HHHHHHhcCCeEE-EEECCCCchHHHHHHHHHHcC
Confidence 9999999999975 666433322 34466776
No 45
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.32 E-value=5.3 Score=40.16 Aligned_cols=95 Identities=14% Similarity=0.223 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeec--------C-C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPK--------V-P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv--------i-~--~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YT 225 (428)
...+.++.+.+.|...|-|-+- + | +...|+.|-.--|.--++.+-|++||++++ |+.|..|+..++|.
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 3566677788999999987432 1 2 234577775555666677789999999995 79999999876664
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014237 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (428)
Q Consensus 226 shGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPS 266 (428)
.- | .+.+++ .+.+-.+.++|.|+|.-|
T Consensus 230 ~~---------g-~~~eea----~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 230 RG---------G-FTEEDA----LEVVEALEEAGVDLVELS 256 (338)
T ss_pred CC---------C-CCHHHH----HHHHHHHHHcCCCEEEec
Confidence 22 2 233333 344445677899988755
No 46
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=90.30 E-value=1.1 Score=46.40 Aligned_cols=70 Identities=27% Similarity=0.445 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc-CCCe--e---cCCC--
Q 014237 198 LVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA-GADV--V---SPSD-- 267 (428)
Q Consensus 198 ~v~rAIr~iK~~~Pd--l~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~A-GADi--V---APSD-- 267 (428)
-...|+++.++.||+ +++-+|.- || ++ .+|+..|++ |.|+ | +|.|
T Consensus 188 ~~~~A~~a~~~~~Pe~~~ivlVD~~--------------------~d-~~----~~al~~a~~~g~~l~gVRlDs~gdl~ 242 (352)
T PRK07188 188 DVVEACKAYHKTFPEDELIALVDYN--------------------ND-VI----TDSLKVAREFGDKLKGVRVDTSKNMI 242 (352)
T ss_pred cHHHHHHHHHHHCCCCCeEEEEecC--------------------cc-cH----HHHHHHHHHhCCCccEEEeCCcchHh
Confidence 356899999999996 67777621 11 11 456677788 9999 6 3455
Q ss_pred ------------------CCCchHHHHHHHHHHCCCCCceeec
Q 014237 268 ------------------MMDGRVGAIRAALDAEGFQHVSIMS 292 (428)
Q Consensus 268 ------------------MMDGRV~aIR~aLD~~Gf~~v~IMS 292 (428)
|+--.+..+|+.||++||.+|.|+.
T Consensus 243 DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~g~~~vkI~a 285 (352)
T PRK07188 243 DKYFIRHPEVLGTFDPRGVNPELIKALRKALDENGGKHVKIIV 285 (352)
T ss_pred hhhcccccccccccccccccHHHHHHHHHHHhhCCCCCcEEEE
Confidence 4556788999999999999998875
No 47
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.17 E-value=3 Score=41.63 Aligned_cols=166 Identities=22% Similarity=0.284 Sum_probs=107.2
Q ss_pred CC-CceeechhhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 014237 147 MP-GCYRLGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (428)
Q Consensus 147 MP-Gv~r~s~~~~l~~~v~~~~~-~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~Y 224 (428)
|| |-|.-+.+ ..++.+.++++ .|..+|-|=+ | .-...-|+++.++ .+-|+.=+-|-|=
T Consensus 83 ~pfg~y~~~~~-~av~~a~r~~~~aGa~aVkiEd----------g-------~~~~~~I~al~~a--gIpV~gHiGL~pq 142 (264)
T PRK00311 83 MPFGSYQASPE-QALRNAGRLMKEAGAHAVKLEG----------G-------EEVAETIKRLVER--GIPVMGHLGLTPQ 142 (264)
T ss_pred CCCCCccCCHH-HHHHHHHHHHHHhCCeEEEEcC----------c-------HHHHHHHHHHHHC--CCCEeeeecccce
Confidence 67 77777775 46777777666 8988887722 1 1244567777655 3556666667777
Q ss_pred CCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeech-hhhhcccccc
Q 014237 225 SSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFYG 303 (428)
Q Consensus 225 TshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSY-saKyASafYG 303 (428)
|.|--.|..- -| ..|+..+.+.+.|..+.+||||+|-....=.--..+|.+.| ++++.+. |.++++.=.=
T Consensus 143 ~~~~~gg~~i-~g--rt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~~~~~~i~~~l------~iP~igiGaG~~~dgqvl 213 (264)
T PRK00311 143 SVNVLGGYKV-QG--RDEEAAEKLLEDAKALEEAGAFALVLECVPAELAKEITEAL------SIPTIGIGAGPDCDGQVL 213 (264)
T ss_pred eecccCCeee-ec--CCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhC------CCCEEEeccCCCCCceee
Confidence 6664444332 23 35677899999999999999999988777443444555544 4677776 4457776666
Q ss_pred chhhhhcC----CCCCCCccccCCCCCChHHHHHHHHhchhcCC
Q 014237 304 PFREALDS----NPRFGDKKTYQMNPANYREALVEAQADESEGA 343 (428)
Q Consensus 304 PFRdAa~S----ap~fgDRktYQmdpaN~~EAlrE~~lDi~EGA 343 (428)
-+-|.+|= .|+| -|.|----....+|+++-..|+++|.
T Consensus 214 v~~D~lG~~~~~~pkf--~k~~~~~~~~~~~a~~~y~~~V~~~~ 255 (264)
T PRK00311 214 VWHDMLGLFSGFKPKF--VKRYADLAGSIREAVKAYVAEVKSGS 255 (264)
T ss_pred eHHhhcCCCCCCCCCc--hHhHhhhHHHHHHHHHHHHHHHhCCC
Confidence 66677765 4454 23443333345677777777777764
No 48
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.13 E-value=2.5 Score=42.12 Aligned_cols=186 Identities=16% Similarity=0.253 Sum_probs=102.6
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC-----HHHHHHHHHHHCCCeEEEeeec
Q 014237 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL-----VPRTIWLLKDRYPDLVIYTDVA 220 (428)
Q Consensus 146 SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~-----v~rAIr~iK~~~Pdl~VitDVc 220 (428)
.||++|=+.. .+-+.+.|+..++. |- ...-. ...+.+-+. +...++.+.+..+.-.|++|.
T Consensus 18 ~~~tayD~~s-------Arl~e~aG~d~i~v-Gd--s~~~~---~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~- 83 (264)
T PRK00311 18 VMLTAYDYPF-------AKLFDEAGVDVILV-GD--SLGMV---VLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADM- 83 (264)
T ss_pred EEEeCCCHHH-------HHHHHHcCCCEEEE-CH--HHHHH---HcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeC-
Confidence 6888865543 23344569998864 41 10000 112222222 235667777777776788999
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCCC---CCceeechhhh
Q 014237 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEGF---QHVSIMSYTAK 296 (428)
Q Consensus 221 Lc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~-AGADiVAPSDMMDGRV~aIR~aLD~~Gf---~~v~IMSYsaK 296 (428)
||.+.+ .|.+...+.++..-+ +||+.|=-.|= +-.+..||.+- ++|. -|++++.=+..
T Consensus 84 --pfg~y~--------------~~~~~av~~a~r~~~~aGa~aVkiEdg-~~~~~~I~al~-~agIpV~gHiGL~pq~~~ 145 (264)
T PRK00311 84 --PFGSYQ--------------ASPEQALRNAGRLMKEAGAHAVKLEGG-EEVAETIKRLV-ERGIPVMGHLGLTPQSVN 145 (264)
T ss_pred --CCCCcc--------------CCHHHHHHHHHHHHHHhCCeEEEEcCc-HHHHHHHHHHH-HCCCCEeeeecccceeec
Confidence 662111 123333344444444 99999988773 11344455443 4552 23344443332
Q ss_pred hccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEE----
Q 014237 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY---- 372 (428)
Q Consensus 297 yASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaY---- 372 (428)
.- |-|+- . | | +....+|+++.+..=.+-|||+|.+ |+.+- ++++++.++.++|+...
T Consensus 146 ~~----gg~~i-~------g-r-----t~~~a~~~i~ra~a~~eAGA~~i~l-E~v~~-~~~~~i~~~l~iP~igiGaG~ 206 (264)
T PRK00311 146 VL----GGYKV-Q------G-R-----DEEAAEKLLEDAKALEEAGAFALVL-ECVPA-ELAKEITEALSIPTIGIGAGP 206 (264)
T ss_pred cc----CCeee-e------c-C-----CHHHHHHHHHHHHHHHHCCCCEEEE-cCCCH-HHHHHHHHhCCCCEEEeccCC
Confidence 21 22221 1 0 0 0011467888888778899999877 45555 89999999999999754
Q ss_pred EechHHHHHH
Q 014237 373 QVSGEYSMIK 382 (428)
Q Consensus 373 qVSGEYaMIk 382 (428)
..+|-.-.+.
T Consensus 207 ~~dgqvlv~~ 216 (264)
T PRK00311 207 DCDGQVLVWH 216 (264)
T ss_pred CCCceeeeHH
Confidence 3455444433
No 49
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=89.91 E-value=11 Score=38.21 Aligned_cols=188 Identities=18% Similarity=0.160 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHC---CCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----------
Q 014237 196 NGLVPRTIWLLKDRY---PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV---------- 262 (428)
Q Consensus 196 ~g~v~rAIr~iK~~~---Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADi---------- 262 (428)
+++-++-++...+.. --|+|...++.++- ..++-| .-.+.+|+-++.|.+.+-.--+.|+-+
T Consensus 29 ~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~-~~~~~~----~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~ 103 (353)
T cd02930 29 DDGIDRLAAFYAERARGGVGLIVTGGFAPNEA-GKLGPG----GPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRY 103 (353)
T ss_pred CCCCHHHHHHHHHHhcCCceEEEEeeEEeCCc-ccCCCC----CcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCC
Confidence 345677777777655 24777777777654 222211 123677888888888765554555443
Q ss_pred ------ecCCCC------------C--------CchHHHHHHHHHHCCCCCceeec-h--------hh-------hhccc
Q 014237 263 ------VSPSDM------------M--------DGRVGAIRAALDAEGFQHVSIMS-Y--------TA-------KYASS 300 (428)
Q Consensus 263 ------VAPSDM------------M--------DGRV~aIR~aLD~~Gf~~v~IMS-Y--------sa-------KyASa 300 (428)
++||.+ - |.-+.|.+.+ .++||.-|-|.. + |. +|..+
T Consensus 104 ~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a-~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs 182 (353)
T cd02930 104 AYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALA-REAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGS 182 (353)
T ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEEecccchHHHHhcCCccCCCcCccCCC
Confidence 677753 1 2233344443 358999898864 1 11 12222
Q ss_pred cccch----------hhhhcCCCCCCCccc---cCCCCCChHHHHHHHHhchhcCCceEEec------CC---------C
Q 014237 301 FYGPF----------REALDSNPRFGDKKT---YQMNPANYREALVEAQADESEGADILLVK------PG---------L 352 (428)
Q Consensus 301 fYGPF----------RdAa~Sap~fgDRkt---YQmdpaN~~EAlrE~~lDi~EGADilMVK------Pa---------l 352 (428)
+-.-. |++++.--..+=|-+ |.-+--...|++.=+.+=.+.|+|+|=|- |. .
T Consensus 183 lenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~ 262 (353)
T cd02930 183 FENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRG 262 (353)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCch
Confidence 22222 344432111121111 11011134555544443334599999772 21 1
Q ss_pred chHHHHHHHHhhCCCCeEEEEechHH---HHHHHHHHCCCCch
Q 014237 353 PYLDVIRLLRDKYPLPIAAYQVSGEY---SMIKAGGALKMIDE 392 (428)
Q Consensus 353 ~YLDII~~vk~~~~lPvaaYqVSGEY---aMIkaAa~~G~iD~ 392 (428)
.+++..+++|+.+++||++ .|.+ .+...+.+.|+.|.
T Consensus 263 ~~~~~~~~ik~~v~iPVi~---~G~i~~~~~a~~~i~~g~~D~ 302 (353)
T cd02930 263 AFAWATAKLKRAVDIPVIA---SNRINTPEVAERLLADGDADM 302 (353)
T ss_pred hhHHHHHHHHHhCCCCEEE---cCCCCCHHHHHHHHHCCCCCh
Confidence 2689999999999999987 3333 44555555665553
No 50
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=89.74 E-value=8.7 Score=38.40 Aligned_cols=172 Identities=18% Similarity=0.247 Sum_probs=103.9
Q ss_pred cCCCCCceeec-----hhhhHHHHHHHHHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014237 144 IGAMPGCYRLG-----WRHGLVQEVAKARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (428)
Q Consensus 144 I~SMPGv~r~s-----~~~~l~~~v~~~~~~GI~sv~L--Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vi 216 (428)
..-+||=.+|+ +-+..+++++.+.+-|+.+||+ |+-+|- .| ..+-+.- -.+.+.++.+|+.++-
T Consensus 10 l~pLPGsP~~~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~-~~-~~~p~tv---a~m~~i~~~v~~~~~~---- 80 (257)
T TIGR00259 10 LLPLPGSPSFDDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPF-LK-EVDPETV---AAMAVIAGQLKSDVSI---- 80 (257)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCC-cC-CCCHHHH---HHHHHHHHHHHHhcCC----
Confidence 45688888886 2224677788889999999998 444452 22 1111111 2244677788887721
Q ss_pred eeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHHHcCCCe----------ecCCCCCCchHHHHHHHHHHCC
Q 014237 217 TDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQARAGADV----------VSPSDMMDGRVGAIRAALDAEG 284 (428)
Q Consensus 217 tDVcLc~YTshGHcGi--l~~~g~IdND~Tl~~Lak~Als~A~AGADi----------VAPSDMMDGRV~aIR~aLD~~G 284 (428)
| +|| +.. |+.+++..-. .+|||. +++.+.++|+-+.+=+.-.+-|
T Consensus 81 ------p------~GvnvL~n----d~~aal~iA~-------a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~ 137 (257)
T TIGR00259 81 ------P------LGINVLRN----DAVAALAIAM-------AVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG 137 (257)
T ss_pred ------C------eeeeeecC----CCHHHHHHHH-------HhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC
Confidence 1 454 321 3344443322 356664 5788889988887655555555
Q ss_pred CCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCC----chHHHHHH
Q 014237 285 FQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGL----PYLDVIRL 360 (428)
Q Consensus 285 f~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal----~YLDII~~ 360 (428)
.+|.|++---+=+ +..+...+..|+++++. ...+||-|+|==.. +=.+.+++
T Consensus 138 -~~v~i~adV~~kh---------------------~~~l~~~~~~e~a~~~~--~~~~aDavivtG~~TG~~~d~~~l~~ 193 (257)
T TIGR00259 138 -SEVKILADIVVKH---------------------AVHLGNRDLESIALDTV--ERGLADAVILSGKTTGTEVDLELLKL 193 (257)
T ss_pred -CCcEEEeceeecc---------------------cCcCCCCCHHHHHHHHH--HhcCCCEEEECcCCCCCCCCHHHHHH
Confidence 6899987643222 22233346667666654 33459999995422 45899999
Q ss_pred HHhhC-CCCeEE
Q 014237 361 LRDKY-PLPIAA 371 (428)
Q Consensus 361 vk~~~-~lPvaa 371 (428)
+|+.. ++|+..
T Consensus 194 vr~~~~~~Pvll 205 (257)
T TIGR00259 194 AKETVKDTPVLA 205 (257)
T ss_pred HHhccCCCeEEE
Confidence 99855 689753
No 51
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=89.67 E-value=4.1 Score=39.32 Aligned_cols=109 Identities=26% Similarity=0.344 Sum_probs=71.4
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhccccccch
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM--------MDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPF 305 (428)
++||.||=| .++.+++. +.+.|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 10 ~~dg~iD~~-~~~~~i~~---l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~---------- 74 (281)
T cd00408 10 TADGEVDLD-ALRRLVEF---LIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVG---------- 74 (281)
T ss_pred CCCCCcCHH-HHHHHHHH---HHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecC----------
Confidence 345667633 44444443 44569999998776 3456777777777765 4677765421
Q ss_pred hhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEech
Q 014237 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 376 (428)
Q Consensus 306 RdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 376 (428)
..+.+|+++.+..=.+-|||.+||=|-..| ++-.+.+.+..++|+..||.-+
T Consensus 75 -------------------~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~ 133 (281)
T cd00408 75 -------------------ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPG 133 (281)
T ss_pred -------------------CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 013567777766656679999999775333 3455667777899999998754
No 52
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=89.66 E-value=7.2 Score=37.50 Aligned_cols=169 Identities=23% Similarity=0.339 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC-CCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~-g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~ 236 (428)
.+.++++++.+.|+..+=+ = .-| | .|-|| ++=.+.++.||+.+|++.+ |+-|=+.
T Consensus 20 ~l~~~~~~l~~~~~~~~H~-D-----imD--g--~fvpn~~~G~~~v~~lr~~~~~~~l--DvHLm~~------------ 75 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHV-D-----VMD--G--HFVPNLSFGPPVVKSLRKHLPNTFL--DCHLMVS------------ 75 (228)
T ss_pred HHHHHHHHHHHcCCCEEEE-e-----ccc--C--ccCCCcCcCHHHHHHHHhcCCCCCE--EEEECCC------------
Confidence 3889999999999988654 2 222 2 24454 4446899999998888765 6655311
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCC
Q 014237 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315 (428)
Q Consensus 237 g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM-DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~f 315 (428)
| .+..+ -.++++|||+|.-=-=. +-++..+-+.+.+.|. .++|
T Consensus 76 ----~---p~~~i---~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~-~~gv------------------------- 119 (228)
T PTZ00170 76 ----N---PEKWV---DDFAKAGASQFTFHIEATEDDPKAVARKIREAGM-KVGV------------------------- 119 (228)
T ss_pred ----C---HHHHH---HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCC-eEEE-------------------------
Confidence 1 11222 23457899988532111 1114455555556673 3333
Q ss_pred CCccccCCCCCChHHHHHHHHhchhcCCceE---EecCC---Cch----HHHHHHHHhhCCCCeEEEEechHHHHHHHHH
Q 014237 316 GDKKTYQMNPANYREALVEAQADESEGADIL---LVKPG---LPY----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 385 (428)
Q Consensus 316 gDRktYQmdpaN~~EAlrE~~lDi~EGADil---MVKPa---l~Y----LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa 385 (428)
-++|.-..|-+++.. + .+..|+| -|-|| ..+ ++-|+++|+..+ -..-+|
T Consensus 120 ------al~p~t~~e~l~~~l-~-~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~--~~~I~V----------- 178 (228)
T PTZ00170 120 ------AIKPKTPVEVLFPLI-D-TDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYP--HLNIQV----------- 178 (228)
T ss_pred ------EECCCCCHHHHHHHH-c-cchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcc--cCeEEE-----------
Confidence 122333344444331 1 1223433 44444 333 567777777543 112233
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 386 ALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 386 ~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
.|-|++ |++..++.+|||+++.
T Consensus 179 -dGGI~~-----~ti~~~~~aGad~iVv 200 (228)
T PTZ00170 179 -DGGINL-----ETIDIAADAGANVIVA 200 (228)
T ss_pred -CCCCCH-----HHHHHHHHcCCCEEEE
Confidence 344554 6888999999998863
No 53
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=89.66 E-value=4 Score=40.09 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=77.6
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHc-CCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARA-GADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~A-GADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGP 304 (428)
++||.|| .+.++.+++-.+. + |+|-|.+.+.+ +=|...+|.+.+..+ .+++||.=..
T Consensus 13 ~~dg~iD-~~~~~~~i~~l~~---~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~viagv~--------- 78 (288)
T cd00954 13 DENGEIN-EDVLRAIVDYLIE---KQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK-GKVTLIAHVG--------- 78 (288)
T ss_pred CCCCCCC-HHHHHHHHHHHHh---cCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCeEEeccC---------
Confidence 3456665 5666666665544 6 99999877753 236666676666654 3566654211
Q ss_pred hhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhC-CCCeEEEEe--
Q 014237 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKY-PLPIAAYQV-- 374 (428)
Q Consensus 305 FRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~-~lPvaaYqV-- 374 (428)
-.|.+|+++.+..=.+-|||.+|+=|=..| .|-.+.+.+.. ++||..||.
T Consensus 79 --------------------~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 79 --------------------SLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 127788888887778899999998664322 34445667788 899999985
Q ss_pred -ch---HHHHHHHHHH
Q 014237 375 -SG---EYSMIKAGGA 386 (428)
Q Consensus 375 -SG---EYaMIkaAa~ 386 (428)
+| ...+++.-++
T Consensus 139 ~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 139 LTGVNLTLEQFLELFE 154 (288)
T ss_pred ccCCCCCHHHHHHHhc
Confidence 45 5566665443
No 54
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=89.42 E-value=4.2 Score=40.32 Aligned_cols=168 Identities=22% Similarity=0.251 Sum_probs=112.2
Q ss_pred CC-CceeechhhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 014237 147 MP-GCYRLGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (428)
Q Consensus 147 MP-Gv~r~s~~~~l~~~v~~~~~-~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~Y 224 (428)
|| |-|.-|.+ ..++.+.++++ .|..+|-|=+ | .-...-|++++++- +=|+..+-|-|=
T Consensus 80 ~~fg~y~~~~~-~av~~a~r~~~~aGa~aVkiEd----------~-------~~~~~~I~al~~ag--ipV~gHiGL~pq 139 (254)
T cd06557 80 MPFGSYQTSPE-QALRNAARLMKEAGADAVKLEG----------G-------AEVAETIRALVDAG--IPVMGHIGLTPQ 139 (254)
T ss_pred CCCCcccCCHH-HHHHHHHHHHHHhCCeEEEEcC----------c-------HHHHHHHHHHHHcC--CCeeccccccce
Confidence 77 77888775 58888787777 9999988722 1 14556777777653 447777778888
Q ss_pred CCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechh-hhhcccccc
Q 014237 225 SSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT-AKYASSFYG 303 (428)
Q Consensus 225 TshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYs-aKyASafYG 303 (428)
|.|--.|..- .| ..|+..+.+.+.|..+.+||||+|=...+=.--...|.+.| ++++++.- .++++.=.=
T Consensus 140 ~~~~~gg~~~-~g--rt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~~~~~~i~~~v------~iP~igiGaG~~~dgqvl 210 (254)
T cd06557 140 SVNQLGGYKV-QG--KTEEEAERLLEDALALEEAGAFALVLECVPAELAKEITEAL------SIPTIGIGAGPDCDGQVL 210 (254)
T ss_pred eeeccCCcee-cc--CCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhC------CCCEEEeccCCCCCceee
Confidence 7765544432 13 35677899999999999999999988777433444444444 46776663 456666666
Q ss_pred chhhhhcCCCCCC--CccccCCCCCChHHHHHHHHhchhcCC
Q 014237 304 PFREALDSNPRFG--DKKTYQMNPANYREALVEAQADESEGA 343 (428)
Q Consensus 304 PFRdAa~Sap~fg--DRktYQmdpaN~~EAlrE~~lDi~EGA 343 (428)
-+-|.+|-.+.|- --|.|----.-..+|+++-..|+++|.
T Consensus 211 v~~D~lG~~~~~~p~f~k~~~~~~~~~~~a~~~y~~~v~~~~ 252 (254)
T cd06557 211 VWHDMLGLSPGFKPKFVKRYADLGELIREAVKAYVEEVKSGS 252 (254)
T ss_pred hHHhhcCCCCCCCCCcHHHHhhhHHHHHHHHHHHHHHHhcCC
Confidence 6677777654432 134554434456777777777777763
No 55
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=89.36 E-value=23 Score=34.80 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 354 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 354 YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
.++.++++++.+++||.+ .|-|..-+-+.|.| .+|||+|--
T Consensus 222 ~l~~v~~i~~~~~ipvi~---------------~GGI~~~~da~~~l----~aGAd~V~i 262 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIG---------------MGGISSAEDAIEFI----MAGASAVQV 262 (301)
T ss_pred cHHHHHHHHHhCCCCEEE---------------ECCCCCHHHHHHHH----HcCCCceeE
Confidence 589999999999999876 33343333445544 478988753
No 56
>PRK07534 methionine synthase I; Validated
Probab=88.93 E-value=21 Score=36.64 Aligned_cols=218 Identities=17% Similarity=0.134 Sum_probs=130.0
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC----CeEEEeeecccCCCCCCcc
Q 014237 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP----DLVIYTDVALDPYSSDGHD 230 (428)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P----dl~VitDVcLc~YTshGHc 230 (428)
++++++.+ -++.|-.-+.- |+.-+...+ ..|++ ..-..+..+|++..|++.- +.+|..++ .||...-+
T Consensus 45 e~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~-~~~~~-~~~~~l~~~av~lAr~a~~~~~~~~~VaGsI--GP~g~~l~- 119 (336)
T PRK07534 45 DNITALHQGFVDAGSDIILTNSFGGTAARLK-LHDAQ-DRVHELNRAAAEIAREVADKAGRKVIVAGSV--GPTGEIME- 119 (336)
T ss_pred HHHHHHHHHHHHhcCCEEEecCcccCHHHHH-hcCcH-HHHHHHHHHHHHHHHHHHHhcCCccEEEEec--CCCccccC-
Confidence 35555554 67899665543 443111111 11211 1224677788888887752 46777774 56655433
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCcee-echhhhhccccccchhhh
Q 014237 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSI-MSYTAKYASSFYGPFREA 308 (428)
Q Consensus 231 Gil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~I-MSYsaKyASafYGPFRdA 308 (428)
..|.++.++-++....|+-.+.++|+|+++=--|.+ -.+.++.+++.+.| .++ +|.+. ++
T Consensus 120 ----~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~---~Pv~vSft~----------~~- 181 (336)
T PRK07534 120 ----PMGALTHALAVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAG---MPWCGTMSF----------DT- 181 (336)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcC---CeEEEEEEE----------CC-
Confidence 235566677888888999999999999999998888 45666666776543 333 33332 11
Q ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCC-ch--HHHHHHH-HhhCCCCeEEEEechHHHHHHHH
Q 014237 309 LDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGL-PY--LDVIRLL-RDKYPLPIAAYQVSGEYSMIKAG 384 (428)
Q Consensus 309 a~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal-~Y--LDII~~v-k~~~~lPvaaYqVSGEYaMIkaA 384 (428)
...-+|-.+..+++..+. +...++|.|++==.. |. +..+.++ +...+.|+.+|==+|+-....
T Consensus 182 ----------~g~l~~G~~~~~~~~~~~-~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~-- 248 (336)
T PRK07534 182 ----------AGRTMMGLTPADLADLVE-KLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNAGIPKYVD-- 248 (336)
T ss_pred ----------CCeeCCCCcHHHHHHHHH-hcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCCCcccCC--
Confidence 123344445666666653 334466999987774 32 3555444 344478999999888822111
Q ss_pred HHCCCCchhhHHHHHHHHHHHhcccEe
Q 014237 385 GALKMIDEQRVMMESLMCLRRAGADII 411 (428)
Q Consensus 385 a~~G~iD~~~~vlEsL~~~kRAGAd~I 411 (428)
...-|-.....+.|....++.+||.+|
T Consensus 249 ~~~~~~~~p~~~~~~~~~~~~~Ga~iI 275 (336)
T PRK07534 249 GHIHYDGTPELMAEYAVLARDAGARII 275 (336)
T ss_pred CccccCCCHHHHHHHHHHHHHcCCcEE
Confidence 000111123456777778888999886
No 57
>PRK08444 hypothetical protein; Provisional
Probab=88.28 E-value=0.94 Score=46.52 Aligned_cols=231 Identities=13% Similarity=0.140 Sum_probs=124.7
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC
Q 014237 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (428)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshG 228 (428)
.-|.++.+ ++++.++++.+.|++.|.|-|-.. .+. +-..+..++|.||+.+|++-|- -||..=
T Consensus 76 ~~y~ls~e-eI~~~a~~a~~~G~~ei~iv~G~~---p~~-------~~e~y~e~ir~Ik~~~p~i~i~------a~s~~E 138 (353)
T PRK08444 76 NPYTMSHE-EILEIVKNSVKRGIKEVHIVSAHN---PNY-------GYEWYLEIFKKIKEAYPNLHVK------AMTAAE 138 (353)
T ss_pred ccccCCHH-HHHHHHHHHHHCCCCEEEEeccCC---CCC-------CHHHHHHHHHHHHHHCCCceEe------eCCHHH
Confidence 44889986 699999999999999998855211 111 1225788999999999987652 221100
Q ss_pred cceeecCCCccccHHHHHHHHHHHHH-HHHcCCCee--------cCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcc
Q 014237 229 HDGIVREDGVIMNDETVHQLCKQAVS-QARAGADVV--------SPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYAS 299 (428)
Q Consensus 229 HcGil~~~g~IdND~Tl~~Lak~Als-~A~AGADiV--------APSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyAS 299 (428)
=.- +.+.--+..++++.+|.+.-+. +--.||.+. +|.-.-.=|...|.+..-+.|+.-++ .
T Consensus 139 i~~-~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~s---------g 208 (353)
T PRK08444 139 VDF-LSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNA---------T 208 (353)
T ss_pred HHH-HHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccc---------e
Confidence 000 0001123456777777766552 222345444 88887777777777777788873321 2
Q ss_pred ccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEe------------cCCCchHHHHH---HHH--
Q 014237 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLV------------KPGLPYLDVIR---LLR-- 362 (428)
Q Consensus 300 afYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMV------------KPal~YLDII~---~vk-- 362 (428)
-.|| .+.++. || ..--+.||+.+.|- -|--.++. +|..+-.|.++ -.|
T Consensus 209 ~l~G-----~gEt~e--dr-------v~hl~~Lr~Lq~~t-~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~ 273 (353)
T PRK08444 209 MLFG-----HIENRE--HR-------IDHMLRLRDLQDKT-GGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRIL 273 (353)
T ss_pred eEEe-----cCCCHH--HH-------HHHHHHHHHhcccc-CCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHh
Confidence 2344 222222 11 11122233332211 11111111 22233333333 222
Q ss_pred -hhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc-HHHHHHHHh
Q 014237 363 -DKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF-ALQAARCLC 424 (428)
Q Consensus 363 -~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYf-A~e~a~wL~ 424 (428)
++++. +=||.|.---.+.+.|...|.=|..-+++|- .=..-|||.--- +. ..++.+.++
T Consensus 274 L~~i~n-i~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e-~i~~~ag~~~~~-~~~~~~l~~~i~ 334 (353)
T PRK08444 274 LDNIPH-IKAYWATLTLNLALVAQEFGANDLDGTIEKE-SIQSAAGAKSAN-GLSLEDFIFLIK 334 (353)
T ss_pred cCCCCc-cccccccCcHHHHHHHHhcCCccCccccccc-cchhhccCCCCC-CCCHHHHHHHHH
Confidence 33322 3478887777888888888888887776664 234567864321 22 344555554
No 58
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=88.14 E-value=5.7 Score=39.21 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=71.0
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhccccccch
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM--------MDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPF 305 (428)
++||.|| .+.++.|++- +.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-.
T Consensus 18 ~~dg~iD-~~~l~~li~~---l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-g~~pvi~gv----------- 81 (296)
T TIGR03249 18 DADGSFD-EAAYRENIEW---LLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-GKVPVYTGV----------- 81 (296)
T ss_pred CCCCCcC-HHHHHHHHHH---HHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEec-----------
Confidence 4567776 4445555554 44799999887654 3457777777777654 466766431
Q ss_pred hhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEech
Q 014237 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 376 (428)
Q Consensus 306 RdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 376 (428)
- .|.+||++.++.=.+-|||.+|+=|--.| .+=.+.+.+..++|+..||-+|
T Consensus 82 ------------------~-~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g 140 (296)
T TIGR03249 82 ------------------G-GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDN 140 (296)
T ss_pred ------------------C-ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 1 14566666666667789999999774322 3445567777889999998665
No 59
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=88.01 E-value=11 Score=38.97 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCCeEEEee----cC--------CCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014237 159 LVQEVAKARDVGVNSVVLFP----KV--------PDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFg----vi--------~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YT 225 (428)
-.+..+.+.+.|...|-|-+ -+ -+...|+.|..--|.--++.+.|+.||++++ |..|..=++.+.|.
T Consensus 152 f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~ 231 (382)
T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYI 231 (382)
T ss_pred HHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhc
Confidence 34445567789999998864 21 2346788887666667788899999999996 66666666655552
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014237 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (428)
Q Consensus 226 shGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD 267 (428)
.....+-...+...+.-.|++...+.+-...++|+|.|..|.
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 232 KDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 211111000000112223445445556666788999998875
No 60
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.96 E-value=8 Score=37.53 Aligned_cols=118 Identities=22% Similarity=0.292 Sum_probs=72.3
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccchh
Q 014237 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (428)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFR 306 (428)
+||.||- +.+..+++ -+.++|+|-|.+.+.+ |=|...++.+.+..+ .+++|+.=..
T Consensus 14 ~dg~iD~-~~~~~~i~---~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~----------- 77 (284)
T cd00950 14 DDGSVDF-DALERLIE---FQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTG----------- 77 (284)
T ss_pred CCCCcCH-HHHHHHHH---HHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccC-----------
Confidence 4566664 44444444 3446999999887654 345555666665544 3455543211
Q ss_pred hhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEe---ch
Q 014237 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV---SG 376 (428)
Q Consensus 307 dAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqV---SG 376 (428)
..|.+|+++.++.=.+-|||.||+=|-..| ++-.+++.+..++|+.-||. +|
T Consensus 78 ------------------~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g 139 (284)
T cd00950 78 ------------------SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTG 139 (284)
T ss_pred ------------------CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhC
Confidence 115567777777667789999998865433 34455667778899999995 44
Q ss_pred ---HHHHHHHHHH
Q 014237 377 ---EYSMIKAGGA 386 (428)
Q Consensus 377 ---EYaMIkaAa~ 386 (428)
...+++.-++
T Consensus 140 ~~ls~~~~~~L~~ 152 (284)
T cd00950 140 VNIEPETVLRLAE 152 (284)
T ss_pred CCCCHHHHHHHhc
Confidence 3345554443
No 61
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=87.73 E-value=2 Score=43.13 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=68.4
Q ss_pred hcCCC-CCCCccccCCCCCChHHHHHHHHhchhcCCceEEec-----CCCc----------hHHHHHHHHhhCCCCeEEE
Q 014237 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLVK-----PGLP----------YLDVIRLLRDKYPLPIAAY 372 (428)
Q Consensus 309 a~Sap-~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK-----Pal~----------YLDII~~vk~~~~lPvaaY 372 (428)
++-+| +|-|-..|+ +.++|+.++..-++||||||=|= |+.. -+.+|+.+++.+++|+..=
T Consensus 21 lNvTpDSFsdgg~~~----~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISID 96 (282)
T PRK11613 21 LNVTPDSFSDGGTHN----SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVD 96 (282)
T ss_pred EcCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34455 366666663 78899999999999999999998 9887 3558888888888887432
Q ss_pred EechHHHHHHHHHHCCC--Cch-----hhHHHHHHHHHHHhcccEeehhc
Q 014237 373 QVSGEYSMIKAGGALKM--IDE-----QRVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 373 qVSGEYaMIkaAa~~G~--iD~-----~~~vlEsL~~~kRAGAd~IiTYf 415 (428)
|=....+++|.++|. |+. +.-++|. +++.|+-+|+.+.
T Consensus 97 --T~~~~va~~AL~~GadiINDI~g~~d~~~~~~---~a~~~~~vVlmh~ 141 (282)
T PRK11613 97 --TSKPEVIRESAKAGAHIINDIRSLSEPGALEA---AAETGLPVCLMHM 141 (282)
T ss_pred --CCCHHHHHHHHHcCCCEEEECCCCCCHHHHHH---HHHcCCCEEEEcC
Confidence 234567777777762 210 2233443 5788999998653
No 62
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=87.63 E-value=13 Score=37.45 Aligned_cols=124 Identities=23% Similarity=0.313 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCC-------------------CCchHHHHHHHHHH-CCCCCceeechhhhhccc
Q 014237 241 NDETVHQLCKQAVSQARAGADVVSPSDM-------------------MDGRVGAIRAALDA-EGFQHVSIMSYTAKYASS 300 (428)
Q Consensus 241 ND~Tl~~Lak~Als~A~AGADiVAPSDM-------------------MDGRV~aIR~aLD~-~Gf~~v~IMSYsaKyASa 300 (428)
|-..+.++++ .++++|+.-|-..|= +|=++..||.+.+. .| .++.|++-+=-|.+.
T Consensus 90 ~~~~v~r~V~---~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~-~~~~IiARTDa~~~~ 165 (285)
T TIGR02320 90 NFEHFRRLVR---KLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTT-EDFMIIARVESLILG 165 (285)
T ss_pred CHHHHHHHHH---HHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccC-CCeEEEEeccccccc
Confidence 5555555544 456789877766442 22246777777766 34 478888774433211
Q ss_pred cccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCC-CchHHHHHHHHhhC-----CCCeEEEEe
Q 014237 301 FYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPG-LPYLDVIRLLRDKY-----PLPIAAYQV 374 (428)
Q Consensus 301 fYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPa-l~YLDII~~vk~~~-----~lPvaaYqV 374 (428)
...+||++.+..=.+-|||+|+|- + ..-.|-|+++-+.+ ++|+.. +
T Consensus 166 -------------------------~~~~eAi~Ra~ay~eAGAD~ifv~-~~~~~~~ei~~~~~~~~~~~p~~pl~~--~ 217 (285)
T TIGR02320 166 -------------------------KGMEDALKRAEAYAEAGADGIMIH-SRKKDPDEILEFARRFRNHYPRTPLVI--V 217 (285)
T ss_pred -------------------------CCHHHHHHHHHHHHHcCCCEEEec-CCCCCHHHHHHHHHHhhhhCCCCCEEE--e
Confidence 136899999999999999999994 4 35567777776666 468863 2
Q ss_pred chHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 375 SGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 375 SGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
.|+| |++ ++..+..+|.+.|+.
T Consensus 218 ~~~~---------~~~--------~~~eL~~lG~~~v~~ 239 (285)
T TIGR02320 218 PTSY---------YTT--------PTDEFRDAGISVVIY 239 (285)
T ss_pred cCCC---------CCC--------CHHHHHHcCCCEEEE
Confidence 3443 333 244667778888764
No 63
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=87.59 E-value=4.1 Score=45.00 Aligned_cols=257 Identities=18% Similarity=0.181 Sum_probs=149.1
Q ss_pred CCCCCCCChHHHh-hhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCC
Q 014237 105 RPRRNRKSPAMRA-SFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDA 183 (428)
Q Consensus 105 R~RRlR~~~~~R~-lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~ 183 (428)
-.|-++-+||-|= .+++. + |+-.++ ++..|.+ .+|...|+= +-+...++.+.+.||.-+-+|=.
T Consensus 54 ~~rfl~edpwerl~~~r~~-~-pnt~lq--mL~Rg~N------~vGy~~~~d-~vv~~~v~~a~~~Gidv~Rifd~---- 118 (596)
T PRK14042 54 CLRFLKEDPWSRLRQLRQA-L-PNTQLS--MLLRGQN------LLGYRNYAD-DVVRAFVKLAVNNGVDVFRVFDA---- 118 (596)
T ss_pred eecccCCCHHHHHHHHHHh-C-CCCceE--EEecccc------ccccccCCh-HHHHHHHHHHHHcCCCEEEEccc----
Confidence 5788888888651 14443 2 443343 3344666 888888873 34556888899999998888743
Q ss_pred CCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014237 184 LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (428)
Q Consensus 184 ~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiV 263 (428)
+|+-.-+.++|+.+|+.- . ++-.|+|==++|-| |++.+.+.|-...++|||+|
T Consensus 119 ---------lnd~~n~~~~i~~~k~~G--~--~~~~~i~yt~sp~~--------------t~e~~~~~ak~l~~~Gad~I 171 (596)
T PRK14042 119 ---------LNDARNLKVAIDAIKSHK--K--HAQGAICYTTSPVH--------------TLDNFLELGKKLAEMGCDSI 171 (596)
T ss_pred ---------CcchHHHHHHHHHHHHcC--C--EEEEEEEecCCCCC--------------CHHHHHHHHHHHHHcCCCEE
Confidence 444455677999999863 3 44455542234433 67777777777888999999
Q ss_pred cCCCCCC--------chHHHHHHHHHH-CCC--CCceeechhhhhccccccchhhhhcCCCC-CCCccccCCCCCCh-HH
Q 014237 264 SPSDMMD--------GRVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYQMNPANY-RE 330 (428)
Q Consensus 264 APSDMMD--------GRV~aIR~aLD~-~Gf--~~v~IMSYsaKyASafYGPFRdAa~Sap~-fgDRktYQmdpaN~-~E 330 (428)
+=.||.= =.|.+||+.++- -+| +|+.=|+-+.=++..--| =|.++++-. +|-+. +|. -|
T Consensus 172 ~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaG--ad~iD~ai~glGg~t------Gn~~tE 243 (596)
T PRK14042 172 AIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAG--CNHIDTAISSFSGGA------SHPPTE 243 (596)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhC--CCEEEeccccccCCC------CcHhHH
Confidence 9999974 357788887531 122 455556654444443334 133444433 45442 443 23
Q ss_pred HHHHHH--hchhcCCceEEecCCCchHHHHHHHHhhCC-------CCeEEEEec-hHHHHHH-HHHHCCCCchhhHHHHH
Q 014237 331 ALVEAQ--ADESEGADILLVKPGLPYLDVIRLLRDKYP-------LPIAAYQVS-GEYSMIK-AGGALKMIDEQRVMMES 399 (428)
Q Consensus 331 AlrE~~--lDi~EGADilMVKPal~YLDII~~vk~~~~-------lPvaaYqVS-GEYaMIk-aAa~~G~iD~~~~vlEs 399 (428)
.+..+. ...+-|-|+-.+.....|+-=||+.-..|. .=|.-||+= |-|+=++ .+.+.|..|.=.-|+|-
T Consensus 244 ~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~~y~~~~~~~~~~~~~v~~hq~PGG~~snl~~Ql~~~g~~d~~~ev~~e 323 (596)
T PRK14042 244 ALVAALTDTPYDTELDLNILLEIDDYFKAVRKKYSQFESEAQNIDPRVQLYQVPGGMISNLYNQLKEQNALDKMDAVHKE 323 (596)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCccccCCcceeecCCCcchhhHHHHHHHHCCcHhHHHHHHHH
Confidence 333222 234445565555554445444443332221 123334443 4555444 47788998865666666
Q ss_pred HHHHHHhcccEe
Q 014237 400 LMCLRRAGADII 411 (428)
Q Consensus 400 L~~~kRAGAd~I 411 (428)
+-..++-.-+.|
T Consensus 324 ~~~v~~~lG~~~ 335 (596)
T PRK14042 324 IPRVRKDLGYPP 335 (596)
T ss_pred HHHHHHHcCCCC
Confidence 666666555555
No 64
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=87.27 E-value=2.4 Score=38.66 Aligned_cols=53 Identities=32% Similarity=0.352 Sum_probs=40.3
Q ss_pred hcCCceEEe--------cCCCch---HHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc
Q 014237 340 SEGADILLV--------KPGLPY---LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 407 (428)
Q Consensus 340 ~EGADilMV--------KPal~Y---LDII~~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAG 407 (428)
+.|||+|.+ ||+... ++.++++++.++ +||.+ .|-++. |.+..+..+|
T Consensus 122 ~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a---------------~GGI~~-----~~i~~~~~~G 181 (212)
T PRK00043 122 AAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVA---------------IGGITP-----ENAPEVLEAG 181 (212)
T ss_pred HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEE---------------ECCcCH-----HHHHHHHHcC
Confidence 579999995 333233 799999999987 99876 355554 5677888999
Q ss_pred ccEee
Q 014237 408 ADIIL 412 (428)
Q Consensus 408 Ad~Ii 412 (428)
||.|.
T Consensus 182 a~gv~ 186 (212)
T PRK00043 182 ADGVA 186 (212)
T ss_pred CCEEE
Confidence 99987
No 65
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=87.27 E-value=6.8 Score=38.34 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=75.4
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccch
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPF 305 (428)
+++|.||-| .++.+++ -+.++|+|-|.+.+.+ +=|...++.+.+..+ .+++|+.-.
T Consensus 11 ~~~g~iD~~-~~~~~i~---~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv----------- 74 (285)
T TIGR00674 11 KEDGSVDFA-ALEKLID---FQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT----------- 74 (285)
T ss_pred CCCCCcCHH-HHHHHHH---HHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC-----------
Confidence 345777644 4444444 3447999999876542 245666666666544 356665432
Q ss_pred hhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEe---c
Q 014237 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV---S 375 (428)
Q Consensus 306 RdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqV---S 375 (428)
-..|.+|+++.++.=.+-|||.|||=|-..| ++-.+.+.+.+++||..||. +
T Consensus 75 ------------------~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~t 136 (285)
T TIGR00674 75 ------------------GSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRT 136 (285)
T ss_pred ------------------CCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHh
Confidence 1125788888888778899999999875444 23345667778999999985 3
Q ss_pred h---HHHHHHHHHH
Q 014237 376 G---EYSMIKAGGA 386 (428)
Q Consensus 376 G---EYaMIkaAa~ 386 (428)
| ...+++.-++
T Consensus 137 g~~l~~~~l~~L~~ 150 (285)
T TIGR00674 137 GVSLYPETVKRLAE 150 (285)
T ss_pred cCCCCHHHHHHHHc
Confidence 4 3345554443
No 66
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=86.49 E-value=4.7 Score=41.03 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCCCeEEEe-ec----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014237 159 LVQEVAKARDVGVNSVVLF-PK----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LF-gv----------i~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTsh 227 (428)
..+.++.+.+.|...|-|- +. .-+...|+.|-.--|.--++.+.|+.||++.++=.|..=+...+|...
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~ 233 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFND 233 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCC
Confidence 5566677889999999884 32 123567777766666777888999999999864236655665555211
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhh
Q 014237 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (428)
Q Consensus 228 GHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRd 307 (428)
+ ..+.|.+...+.+-..+++|+|+|.-|.- +.. ... -.|...|=..+|+
T Consensus 234 ---------~--~~~~~~ee~~~~~~~l~~~g~d~i~vs~g---~~~------------~~~-----~~~~~~~~~~ik~ 282 (338)
T cd02933 234 ---------M--GDSDPEATFSYLAKELNKRGLAYLHLVEP---RVA------------GNP-----EDQPPDFLDFLRK 282 (338)
T ss_pred ---------C--CCCCCHHHHHHHHHHHHHcCCcEEEEecC---CCC------------Ccc-----cccchHHHHHHHH
Confidence 1 12334444555666678889999987542 110 000 0111112222355
Q ss_pred hhcCCCCCCCccccCCCCCChHHHHHHHHhchhcC-CceEEe-cCCCchHHHHHHHHhhCCCC
Q 014237 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLV-KPGLPYLDVIRLLRDKYPLP 368 (428)
Q Consensus 308 Aa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EG-ADilMV-KPal~YLDII~~vk~~~~lP 368 (428)
++ +.|-++.- . ++|...+++ ++|| ||+||+ +|.+..=|+++++++.-.+|
T Consensus 283 ~~-~ipvi~~G-~--i~~~~a~~~-------l~~g~~D~V~~gR~~ladP~~~~k~~~g~~~~ 334 (338)
T cd02933 283 AF-KGPLIAAG-G--YDAESAEAA-------LADGKADLVAFGRPFIANPDLVERLKNGAPLN 334 (338)
T ss_pred Hc-CCCEEEEC-C--CCHHHHHHH-------HHcCCCCEEEeCHhhhhCcCHHHHHhcCCCCC
Confidence 54 34554311 1 223333332 4445 999976 89999999999999866554
No 67
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=86.44 E-value=9.9 Score=37.44 Aligned_cols=95 Identities=22% Similarity=0.301 Sum_probs=67.2
Q ss_pred CCCccccCCCCCChHHHHHHHHhchhcCCceEEe-----cCCCc----------hHHHHHHHHhhCCCCeEEEEechHHH
Q 014237 315 FGDKKTYQMNPANYREALVEAQADESEGADILLV-----KPGLP----------YLDVIRLLRDKYPLPIAAYQVSGEYS 379 (428)
Q Consensus 315 fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMV-----KPal~----------YLDII~~vk~~~~lPvaaYqVSGEYa 379 (428)
|-|...| .+.++|++.+..-+++|||+|=| .|+.. -+.+|+.+++.+++|+..= |-.+.
T Consensus 14 F~dg~~~----~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSID--T~~~~ 87 (257)
T cd00739 14 FSDGGRF----LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVD--TFRAE 87 (257)
T ss_pred CCCCCCC----CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEe--CCCHH
Confidence 5454444 36799999999999999999999 67765 3557888888889997542 44567
Q ss_pred HHHHHHHCC--CCch---hhHHHHHHHHHHHhcccEeehhc
Q 014237 380 MIKAGGALK--MIDE---QRVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 380 MIkaAa~~G--~iD~---~~~vlEsL~~~kRAGAd~IiTYf 415 (428)
.+++|.+.| +|+- ...=-|.+.-+++.||.+|+.+.
T Consensus 88 v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 88 VARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECC
Confidence 888888877 3331 10002344457788999999764
No 68
>PLN02428 lipoic acid synthase
Probab=85.81 E-value=27 Score=36.41 Aligned_cols=188 Identities=19% Similarity=0.223 Sum_probs=112.4
Q ss_pred ChHHHhhhhcCCCCCC------------------CceeeEEEeeCCC--C----cccCCCCCceeechhhhHHHHHHHHH
Q 014237 112 SPAMRASFQETNLSPA------------------NFVYPLFIHEGEE--D----TPIGAMPGCYRLGWRHGLVQEVAKAR 167 (428)
Q Consensus 112 ~~~~R~lv~Et~L~~~------------------dLI~PlFV~eg~~--~----~~I~SMPGv~r~s~~~~l~~~v~~~~ 167 (428)
...+|+++++..|+.= ...---|+.=|.. . =.++...|-++...+ ++.+.++.+.
T Consensus 65 ~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~~p~~~d~~-Ep~~vA~~v~ 143 (349)
T PLN02428 65 YTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSRTPPPPDPD-EPENVAEAIA 143 (349)
T ss_pred HHHHHHHHHHCCCceeecCCCCCChHHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCCCCCCCChh-hHHHHHHHHH
Confidence 4567888888877641 1223445443432 1 144555555666664 5788888999
Q ss_pred HcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHH
Q 014237 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQ 247 (428)
Q Consensus 168 ~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~ 247 (428)
++|++.|+|-+.--+.+.|. .-.-+.+.|+.||+..|++.|-+ |.| +. .-+++.|+.
T Consensus 144 ~~Glk~vvltSg~rddl~D~-------ga~~~~elir~Ir~~~P~i~Ie~---L~p------------df-~~d~elL~~ 200 (349)
T PLN02428 144 SWGVDYVVLTSVDRDDLPDG-------GSGHFAETVRRLKQLKPEILVEA---LVP------------DF-RGDLGAVET 200 (349)
T ss_pred HcCCCEEEEEEcCCCCCCcc-------cHHHHHHHHHHHHHhCCCcEEEE---eCc------------cc-cCCHHHHHH
Confidence 99999988877511122231 11246689999999999764422 222 11 112555554
Q ss_pred HHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCC
Q 014237 248 LCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPAN 327 (428)
Q Consensus 248 Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN 327 (428)
| ++||.|++. +| +++++.
T Consensus 201 L-------~eAG~d~i~------------------hn------------------------lETv~r------------- 218 (349)
T PLN02428 201 V-------ATSGLDVFA------------------HN------------------------IETVER------------- 218 (349)
T ss_pred H-------HHcCCCEEc------------------cC------------------------ccCcHH-------------
Confidence 4 568888876 11 111111
Q ss_pred hHHHHHHHHhchhcCCceEEecCCCc---hHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHH
Q 014237 328 YREALVEAQADESEGADILLVKPGLP---YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCL 403 (428)
Q Consensus 328 ~~EAlrE~~lDi~EGADilMVKPal~---YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~ 403 (428)
++... -||... +|++|+.+|+.+ ++.+-+|=+ -|+-+.++-+.|.|.-+
T Consensus 219 ----L~~~I-----------r~~~~sye~~Le~L~~ak~~~pGi~tkSg~M------------vGLGET~Edv~e~l~~L 271 (349)
T PLN02428 219 ----LQRIV-----------RDPRAGYKQSLDVLKHAKESKPGLLTKTSIM------------LGLGETDEEVVQTMEDL 271 (349)
T ss_pred ----HHHHh-----------cCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE------------EecCCCHHHHHHHHHHH
Confidence 11111 123333 577788888875 588877766 35546678899999999
Q ss_pred HHhcccEee
Q 014237 404 RRAGADIIL 412 (428)
Q Consensus 404 kRAGAd~Ii 412 (428)
++.|.|++.
T Consensus 272 relgvd~vt 280 (349)
T PLN02428 272 RAAGVDVVT 280 (349)
T ss_pred HHcCCCEEe
Confidence 999999864
No 69
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=85.38 E-value=4.4 Score=39.39 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC---CCeEEEeeecccCCCCCCcceeec
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY---PDLVIYTDVALDPYSSDGHDGIVR 234 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~---Pdl~VitDVcLc~YTshGHcGil~ 234 (428)
.+.+.++++.+.|+..|.+=..+.+..-...|...+-+-.-..+-|++.++.. ++++|++=+. .| .
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTD--a~--------~- 153 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTD--AL--------L- 153 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcC--ch--------h-
Confidence 58888999999999999883322211111112222222222334555555554 4677775321 11 0
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechh
Q 014237 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (428)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYs 294 (428)
.+..+++.-.+.+..|++||||+|-+-..- ....|++.-++ .+.+|+-|.
T Consensus 154 -----~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--~~~~~~~~~~~---~~~Pl~~~~ 203 (243)
T cd00377 154 -----AGEEGLDEAIERAKAYAEAGADGIFVEGLK--DPEEIRAFAEA---PDVPLNVNM 203 (243)
T ss_pred -----ccCCCHHHHHHHHHHHHHcCCCEEEeCCCC--CHHHHHHHHhc---CCCCEEEEe
Confidence 012245566677899999999999865544 44667766655 367888773
No 70
>PRK05927 hypothetical protein; Provisional
Probab=85.37 E-value=1.4 Score=45.06 Aligned_cols=114 Identities=21% Similarity=0.341 Sum_probs=75.1
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE----Eeeec-cc
Q 014237 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI----YTDVA-LD 222 (428)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~V----itDVc-Lc 222 (428)
+.-|+++.+ ++++.++++.+.|++.|.+=|-.. +. .+-..+..+++.||+.+|++.+ .+.++ +|
T Consensus 71 ~~~y~ls~e-ei~~~a~~~~~~G~~~i~i~gG~~-----p~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~ 139 (350)
T PRK05927 71 SDAYLLSFD-EFRSLMQRYVSAGVKTVLLQGGVH-----PQ-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAA 139 (350)
T ss_pred ccccccCHH-HHHHHHHHHHHCCCCEEEEeCCCC-----CC-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHH
Confidence 455899996 699999999999999988643211 11 1234678999999999998866 22222 12
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc-CC--------CeecCCCC-CCchHHHHHHHHHHCCC
Q 014237 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA-GA--------DVVSPSDM-MDGRVGAIRAALDAEGF 285 (428)
Q Consensus 223 ~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~A-GA--------DiVAPSDM-MDGRV~aIR~aLD~~Gf 285 (428)
-..|+. ..+++++|.+.-+..--- |+ ++++|..+ -|-|+..||.|= +.|+
T Consensus 140 -----~~~G~~-------~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~-~lGi 199 (350)
T PRK05927 140 -----QVSGIS-------TEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAH-RLGF 199 (350)
T ss_pred -----HhcCCC-------HHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHH-HcCC
Confidence 011222 467777765544421111 22 78999887 499999999764 7787
No 71
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=85.15 E-value=6.5 Score=42.18 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC-----CCCccee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS-----SDGHDGI 232 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YT-----shGHcGi 232 (428)
+..+.++.+++.|++.|.|=. .+ |.. -.+..+|+.||+.||++.||++-|...=+ ..|=++|
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~----a~----g~~-----~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i 291 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDT----AH----GHQ-----VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANII 291 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeC----CC----CCc-----HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEE
Confidence 467889999999999977722 22 111 35678999999999999999985432211 2344444
Q ss_pred e-c-CCC-----ccccH---HHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceeechhh----
Q 014237 233 V-R-EDG-----VIMND---ETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMSYTA---- 295 (428)
Q Consensus 233 l-~-~~g-----~IdND---~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV---~aIR~aLD~~Gf~~v~IMSYsa---- 295 (428)
- - ..| .+..+ .|+.-+.+.|-...+.|..+|| ||.| +-|-+||. .|-.-|.+=++=|
T Consensus 292 ~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~via-----dGgi~~~~di~kala-~GA~~vm~g~~~ag~~e 365 (475)
T TIGR01303 292 KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWA-----DGGVRHPRDVALALA-AGASNVMVGSWFAGTYE 365 (475)
T ss_pred EECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEE-----eCCCCCHHHHHHHHH-cCCCEEeechhhccccc
Confidence 2 0 011 11222 3455555555555566888887 6655 56777773 6655555544422
Q ss_pred -------hhccccccchh-----hhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCce---EEecCCCchHHHHHH
Q 014237 296 -------KYASSFYGPFR-----EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI---LLVKPGLPYLDVIRL 360 (428)
Q Consensus 296 -------KyASafYGPFR-----dAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADi---lMVKPal~YLDII~~ 360 (428)
+|.-..|--|| +|... ..+..+-|| + + ...-+.||-.. .+|.--.+=.|+|..
T Consensus 366 spg~~~~~~~g~~~k~yrGmgs~~a~~~--~~~~~ry~~-~--~-------~~~~v~eGv~~~~~~~~~~~g~~~~~i~~ 433 (475)
T TIGR01303 366 SPGDLMRDRDGRPYKESFGMASKRAVVA--RTGADNAFD-R--A-------RKALFEEGISTSRMGLDPDRGGVEDLIDH 433 (475)
T ss_pred CCCceEEeECCEEEEEEecccCHHHHhh--ccccchhhh-h--h-------ccccccCceecccccccCCCCCHHHHHHH
Confidence 12233344554 23321 112122334 3 1 12346688773 456666677788776
Q ss_pred HH
Q 014237 361 LR 362 (428)
Q Consensus 361 vk 362 (428)
+.
T Consensus 434 ~~ 435 (475)
T TIGR01303 434 II 435 (475)
T ss_pred HH
Confidence 54
No 72
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=84.91 E-value=1.2 Score=46.42 Aligned_cols=228 Identities=19% Similarity=0.138 Sum_probs=132.4
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014237 149 GCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (428)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTsh 227 (428)
.=|-++.+ ++.++++++++.|++-|++ +|.-|+ .+- . .....++.||+.||++.|.+ ||.-
T Consensus 86 ~~y~Ls~e-eI~~~~~~~~~~G~~Evli~gG~~p~--~~~--~-------y~~~~~~~ik~~~p~~~i~a------~s~~ 147 (370)
T COG1060 86 KAYTLSPE-EILEEVREAVKRGITEVLIVGGEHPE--LSL--E-------YYEELFRTIKEEFPDLHIHA------LSAG 147 (370)
T ss_pred cccccCHH-HHHHHHHHHHHcCCeEEEEecCcCCC--cch--H-------HHHHHHHHHHHhCcchhhcc------cCHH
Confidence 44788886 6999999999999999987 565332 111 1 78899999999999876643 3211
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----------------ec-CCCCCCchHHHHHHHHHHCCCCCcee
Q 014237 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV----------------VS-PSDMMDGRVGAIRAALDAEGFQHVSI 290 (428)
Q Consensus 228 GHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADi----------------VA-PSDMMDGRV~aIR~aLD~~Gf~~v~I 290 (428)
.=.= +...+.....|.++.|- +||.|. ++ |.---+.|+..++.|- +.|...++.
T Consensus 148 ei~~-~~~~~~~s~~E~l~~Lk-------~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah-~lGI~~tat 218 (370)
T COG1060 148 EILF-LAREGGLSYEEVLKRLK-------EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAH-RLGIPTTAT 218 (370)
T ss_pred HhHH-HHhccCCCHHHHHHHHH-------HcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCCccce
Confidence 1000 11346677888888886 555542 23 3333457888888887 688988888
Q ss_pred echhhhhccccccchhhhhcCCCC-------CCCcccc---CCCCCChHHHHHHHHhchhcCCceEEe--cCCCchHHHH
Q 014237 291 MSYTAKYASSFYGPFREALDSNPR-------FGDKKTY---QMNPANYREALVEAQADESEGADILLV--KPGLPYLDVI 358 (428)
Q Consensus 291 MSYsaKyASafYGPFRdAa~Sap~-------fgDRktY---QmdpaN~~EAlrE~~lDi~EGADilMV--KPal~YLDII 358 (428)
|-|--- .+ ..|.+++--. +|-..++ -+-|.|.. + -+.-+ ++..-||-+|
T Consensus 219 ml~Gh~-----E~-~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~-----------~--~~~~~~~~~~~~~l~~i 279 (370)
T COG1060 219 MLLGHV-----ET-REDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGP-----------L--PAEVVPEASLEQDLKAI 279 (370)
T ss_pred eEEEec-----CC-HHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCC-----------c--cccCCCCCCHHHHHHHH
Confidence 887431 22 2222221100 0000000 01111111 0 01111 1223455566
Q ss_pred HHHHhhCC--CC-eEEEEechHHHHHHHHHHCCCCchhhHHHHHHHH-HHHhcccEeehh-cHHHHHHHHhc
Q 014237 359 RLLRDKYP--LP-IAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC-LRRAGADIILTY-FALQAARCLCG 425 (428)
Q Consensus 359 ~~vk~~~~--lP-vaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~-~kRAGAd~IiTY-fA~e~a~wL~~ 425 (428)
+-.|--++ ++ +-+|.|.=+-.+..++-..|.-|..-+++| .. .+.||+.- -.. =..++.+|+++
T Consensus 280 AiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt~~~--E~v~~~a~~~~-~~~~~~eel~~~i~~ 348 (370)
T COG1060 280 ALARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGTGYE--EKVNPAAGAFS-GDWRSVEELAALIKE 348 (370)
T ss_pred HHHHHHccCccccccCcccccchHHHHHHHHhCcccCcCCCcc--ccccccccccc-CCCCCHHHHHHHHHH
Confidence 65555443 66 788999888888899888888888766666 33 45566543 111 12456666653
No 73
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=84.70 E-value=2.9 Score=43.93 Aligned_cols=136 Identities=25% Similarity=0.273 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhh-------hhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRd-------Aa~Sap~- 314 (428)
-|-+.+++++-.++..|.|+|= |.+++.| -=|-||+| |++.+-+
T Consensus 137 lsp~~~a~~~y~~~~GGvD~IK----------------DDE~l~~------------q~~~p~~eRv~a~~~a~~~a~~e 188 (391)
T cd08209 137 LDLDDLAEQLREQALGGVDLIK----------------DDEILFD------------NPLAPALERIRACRPVLQEVYEQ 188 (391)
T ss_pred CCHHHHHHHHHHHHhCCCCccc----------------ccccCCC------------CCCCCHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999873 3333322 22344431 2221111
Q ss_pred CCCccccCCCCC-ChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh--hCCCCeEEE-EechHHHHHHHHHHCCCC
Q 014237 315 FGDKKTYQMNPA-NYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD--KYPLPIAAY-QVSGEYSMIKAGGALKMI 390 (428)
Q Consensus 315 fgDRktYQmdpa-N~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~--~~~lPvaaY-qVSGEYaMIkaAa~~G~i 390 (428)
-|-|+-|-.|.. ..+|.++.+..=.++|++.+||=|...=+|.++.+++ .+++|+.+- ..+|-|. ..-..|+
T Consensus 189 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~lpIhaHra~~ga~~---~~~~~Gi- 264 (391)
T cd08209 189 TGRRTLYAVNLTGPVFTLKEKARRLVEAGANALLFNVFAYGLDVLEALASDPEINVPIFAHPAFAGALY---GSPDYGI- 264 (391)
T ss_pred hCCcceEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHhcCcCCcEEEecCCcccccc---cCCCCCC-
Confidence 266777777764 4577788888888999999999998777999999998 568888742 2333221 0112333
Q ss_pred chhhHHHHHHHHHHHhcccEeeh
Q 014237 391 DEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 391 D~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+. ..++=. -+|=||||.+++
T Consensus 265 s~-~~~l~k--l~RLaGaD~~~~ 284 (391)
T cd08209 265 AA-SVLLGT--LMRLAGADAVLF 284 (391)
T ss_pred cH-HHHHHH--HHHHcCCCcccc
Confidence 11 123333 356699999975
No 74
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=84.59 E-value=5 Score=39.27 Aligned_cols=127 Identities=20% Similarity=0.284 Sum_probs=74.2
Q ss_pred hHHHhhhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCc-ccCc
Q 014237 113 PAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSP-TGDE 191 (428)
Q Consensus 113 ~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~-~Gs~ 191 (428)
..+|++.+-+. .||.|.=+.. ..+ +.. .+.+.|+++.+.|+-.|.| .+ .|.. .+..
T Consensus 59 ~~~~~I~~~~~-------iPv~vD~d~G------yG~----~~~-~v~~tv~~~~~aG~agi~I----ED-q~~~~~~~~ 115 (238)
T PF13714_consen 59 AAVRRIARAVS-------IPVIVDADTG------YGN----DPE-NVARTVRELERAGAAGINI----ED-QRCGHGGKQ 115 (238)
T ss_dssp HHHHHHHHHSS-------SEEEEE-TTT------SSS----SHH-HHHHHHHHHHHCT-SEEEE----ES-BSTTTSTT-
T ss_pred HHHHHHHhhhc-------CcEEEEcccc------cCc----hhH-HHHHHHHHHHHcCCcEEEe----ec-cccCCCCCc
Confidence 34566666554 5998875443 000 122 4888999999999999887 23 2322 2222
Q ss_pred CcCCCCCHHHHHHHHHHHC--CCeEEEe--eecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014237 192 AYNDNGLVPRTIWLLKDRY--PDLVIYT--DVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (428)
Q Consensus 192 A~~~~g~v~rAIr~iK~~~--Pdl~Vit--DVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD 267 (428)
-.+.+ -...=||+++++- ++++|++ |..+. +...++--.+-+..|++||||+|-+-.
T Consensus 116 l~~~e-e~~~kI~Aa~~a~~~~~~~I~ARTDa~~~------------------~~~~~deaI~R~~aY~eAGAD~ifi~~ 176 (238)
T PF13714_consen 116 LVSPE-EMVAKIRAAVDARRDPDFVIIARTDAFLR------------------AEEGLDEAIERAKAYAEAGADMIFIPG 176 (238)
T ss_dssp B--HH-HHHHHHHHHHHHHSSTTSEEEEEECHHCH------------------HHHHHHHHHHHHHHHHHTT-SEEEETT
T ss_pred eeCHH-HHHHHHHHHHHhccCCeEEEEEecccccc------------------CCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 22111 1123345555433 6788875 33322 445555666668899999999999888
Q ss_pred CCC-chHHHHHHHHH
Q 014237 268 MMD-GRVGAIRAALD 281 (428)
Q Consensus 268 MMD-GRV~aIR~aLD 281 (428)
+.+ ..|..+.+.++
T Consensus 177 ~~~~~~i~~~~~~~~ 191 (238)
T PF13714_consen 177 LQSEEEIERIVKAVD 191 (238)
T ss_dssp SSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhcC
Confidence 775 46777777773
No 75
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=84.57 E-value=2.4 Score=42.67 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=42.6
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014237 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (428)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit 217 (428)
.|+++.+ +++++++++.+.|++.|.|-|-..+ ..+...+...++.||+.+|++-+.+
T Consensus 67 ~y~ls~e-eI~e~~~~~~~~G~~~i~l~gG~~p----------~~~~~~~~~i~~~Ik~~~~~i~~~~ 123 (343)
T TIGR03551 67 AYLLSLE-EIAERAAEAWKAGATEVCIQGGIHP----------DLDGDFYLDILRAVKEEVPGMHIHA 123 (343)
T ss_pred cccCCHH-HHHHHHHHHHHCCCCEEEEEeCCCC----------CCCHHHHHHHHHHHHHHCCCceEEe
Confidence 4788996 6999999999999999988642111 1122456889999999999876543
No 76
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=84.56 E-value=12 Score=36.51 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=28.8
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 014237 354 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 354 YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTY 414 (428)
.++.++++++.+++||.+ .|=|..-+-+.|.| ++|||+|--+
T Consensus 219 ~~~~i~~i~~~~~ipii~---------------~GGI~~~~da~~~l----~~GAd~V~ig 260 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIG---------------VGGIASGEDALEFL----MAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHhcCCCEEE---------------ECCCCCHHHHHHHH----HcCCCEEEEc
Confidence 479999999999999876 34443333334443 5899988644
No 77
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=84.37 E-value=26 Score=35.31 Aligned_cols=172 Identities=19% Similarity=0.288 Sum_probs=101.8
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcC-CCCC------HHHHHHHHHHHCCCeEEEee
Q 014237 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN-DNGL------VPRTIWLLKDRYPDLVIYTD 218 (428)
Q Consensus 146 SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~-~~g~------v~rAIr~iK~~~Pdl~VitD 218 (428)
+||+.|=+.. .+-+.+.|+..++. | |.-|...+- +|+. +..-.+.+.+..|+-+|++|
T Consensus 18 ~m~tayD~~s-------A~i~~~aG~d~ilv-G-------dSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~D 82 (263)
T TIGR00222 18 VAITAYDYSF-------AKLFADAGVDVILV-G-------DSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTD 82 (263)
T ss_pred EEEeccCHHH-------HHHHHHcCCCEEEE-C-------ccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeC
Confidence 4777765543 23345789988774 4 223332221 1221 33566777788899999999
Q ss_pred ecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHH-HcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhh
Q 014237 219 VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA-RAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKY 297 (428)
Q Consensus 219 VcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A-~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKy 297 (428)
+=+-.| + +.|+. .+-|...- ++|||.|=-.|= ..+..+=++|.+.|. ++|.+
T Consensus 83 mPf~sy---~-----------~~e~a----~~na~rl~~eaGa~aVkiEgg--~~~~~~i~~l~~~gI---pV~gH---- 135 (263)
T TIGR00222 83 LPFMSY---A-----------TPEQA----LKNAARVMQETGANAVKLEGG--EWLVETVQMLTERGV---PVVGH---- 135 (263)
T ss_pred CCcCCC---C-----------CHHHH----HHHHHHHHHHhCCeEEEEcCc--HhHHHHHHHHHHCCC---CEEEe----
Confidence 844433 1 11222 22233333 499999988862 133333378888874 45543
Q ss_pred ccccccchhhhhcCCCCCCCcc-ccCCCCC---ChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEE
Q 014237 298 ASSFYGPFREALDSNPRFGDKK-TYQMNPA---NYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY 372 (428)
Q Consensus 298 ASafYGPFRdAa~Sap~fgDRk-tYQmdpa---N~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaY 372 (428)
+|=+|+.-..- .|..--. ..+++|+.+..=.+-|||+|.+ |+.+ -++.+++.++.++|+...
T Consensus 136 -----------iGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivl-E~vp-~~~a~~It~~l~iP~iGI 201 (263)
T TIGR00222 136 -----------LGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVL-ECVP-VELAAKITEALAIPVIGI 201 (263)
T ss_pred -----------cCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEE-cCCc-HHHHHHHHHhCCCCEEee
Confidence 23333321111 1322211 2356777777767889999866 6777 799999999999999753
No 78
>PRK12999 pyruvate carboxylase; Reviewed
Probab=84.17 E-value=2.2 Score=50.28 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=67.5
Q ss_pred HHH-HHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 159 LVQ-EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 159 l~~-~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
+++ .++.+.+.|+..|-+|=- ..| ---+.++|+.+|+. .. ++.+|+| ||.+ ++|...
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~----lnd---------~~~~~~~i~~vk~~--g~--~~~~~i~-ytg~----~~d~~~ 685 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDS----LNW---------VENMRVAIDAVRET--GK--IAEAAIC-YTGD----ILDPAR 685 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEecc----CCh---------HHHHHHHHHHHHHc--CC--eEEEEEE-EEec----CCCCCC
Confidence 445 499999999999999832 222 11278899999887 23 7788888 7622 222111
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aL 280 (428)
. --|++.+.+.|-...++|||+|+=.||.= -.|.+||+++
T Consensus 686 ~---~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~ 733 (1146)
T PRK12999 686 A---KYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV 733 (1146)
T ss_pred C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc
Confidence 1 13667777777778899999999999964 4677888875
No 79
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=83.60 E-value=6.1 Score=42.43 Aligned_cols=209 Identities=20% Similarity=0.213 Sum_probs=113.7
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 014237 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (428)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGH 229 (428)
-|+++.+ +++++++.+.+.|++.+.|.+= .... ..+-..+.++|+.||+.+++..-+.-|++.
T Consensus 112 r~~Ls~E-EI~~ea~~~~~~G~~~i~LvsG--e~p~-------~~~~eyi~e~i~~I~~~~~~~g~i~~v~in------- 174 (469)
T PRK09613 112 RKKLTQE-EIREEVKALEDMGHKRLALVAG--EDPP-------NCDIEYILESIKTIYSTKHGNGEIRRVNVN------- 174 (469)
T ss_pred ceECCHH-HHHHHHHHHHHCCCCEEEEEeC--CCCC-------CCCHHHHHHHHHHHHHhccccCcceeeEEE-------
Confidence 3788986 6999999999999999999432 1111 122345778999999876544433333332
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCee------------------cCCCCCCchHHHHHHHHHHCCCCCceee
Q 014237 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVV------------------SPSDMMDGRVGAIRAALDAEGFQHVSIM 291 (428)
Q Consensus 230 cGil~~~g~IdND~Tl~~Lak~Als~A~AGADiV------------------APSDMMDGRV~aIR~aLD~~Gf~~v~IM 291 (428)
.|.+ +.+.++.| .+||+|.+ .|..--|=|+.+++.+. +.|+.+|.+-
T Consensus 175 ig~l-------t~eey~~L-------keaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~-~aGi~~Vg~G 239 (469)
T PRK09613 175 IAPT-------TVENYKKL-------KEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAM-EAGIDDVGIG 239 (469)
T ss_pred eecC-------CHHHHHHH-------HHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHH-HcCCCeeCeE
Confidence 2222 22333333 45555541 35555678999999988 5899765432
Q ss_pred ---------------chhhhhccccc--cc-------hhhhhcCCCCCCCcccc-CCC-CCChHHHHHHHHhchhcCCce
Q 014237 292 ---------------SYTAKYASSFY--GP-------FREALDSNPRFGDKKTY-QMN-PANYREALVEAQADESEGADI 345 (428)
Q Consensus 292 ---------------SYsaKyASafY--GP-------FRdAa~Sap~fgDRktY-Qmd-paN~~EAlrE~~lDi~EGADi 345 (428)
.+.+++=-.-| || ||-+-|+ .+ +.+ +-+-+|.++-+.
T Consensus 240 ~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gt--------pl~~~~~~vsd~e~lriiA--------- 302 (469)
T PRK09613 240 VLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGS--------DLENFPYLVSDEDFKKIVA--------- 302 (469)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCC--------CcccCCCCCCHHHHHHHHH---------
Confidence 11122211113 23 2322222 12 121 234445554433
Q ss_pred EEecCCCchHHHHHHHHhhC-----CCCeEEEEec-------hHHHHH--HHHHHCCCCchhhHHHHHHHHHHHhcc
Q 014237 346 LLVKPGLPYLDVIRLLRDKY-----PLPIAAYQVS-------GEYSMI--KAGGALKMIDEQRVMMESLMCLRRAGA 408 (428)
Q Consensus 346 lMVKPal~YLDII~~vk~~~-----~lPvaaYqVS-------GEYaMI--kaAa~~G~iD~~~~vlEsL~~~kRAGA 408 (428)
+..=.+||..|+-..+|.- -+|+++=|+| |-|+=- ....++=-+...+.+-|....++..|=
T Consensus 303 -~~RL~~P~~~I~lStRE~~~~r~~~~~~gvt~~sags~t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~ 378 (469)
T PRK09613 303 -ILRLAVPYTGMILSTRESAELRREVLELGVSQISAGSRTGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCEMGY 378 (469)
T ss_pred -HHHHHCCCCCceeecCCCHHHHHHHHhhcceeecccccCCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCC
Confidence 1222456777766555432 2889999997 447611 001111123335677788877776663
No 80
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=83.02 E-value=45 Score=39.99 Aligned_cols=221 Identities=14% Similarity=0.126 Sum_probs=129.6
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--------CeEEEeeecccCCCC
Q 014237 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--------DLVIYTDVALDPYSS 226 (428)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P--------dl~VitDVcLc~YTs 226 (428)
++++++.+ -++.|-.-|.- |+.-+...+ ..|-+ ..-..+..+|++..|++.. ...|..+ +.||+.
T Consensus 50 e~I~~IH~~Yl~AGAdII~TNTF~a~~~~L~-~yg~~-~~~~eln~~av~lAr~Aa~~~~~~~~~~~~VAGs--IGP~g~ 125 (1178)
T TIGR02082 50 EVIATIHRAYFEAGADIIETNTFNSTTISQA-DYDLE-DLIYDLNFKGAKLARAVADEFTLTPEKPRFVAGS--MGPTNK 125 (1178)
T ss_pred HHHHHHHHHHHHHhchheecCCccCCHHHHh-hCCHH-HHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEE--eCCCCC
Confidence 46666665 57888663322 664221111 11111 1112345577777776543 3567776 457764
Q ss_pred CCcce-eecCC--CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch-----HHHHHHHHHHCCCCCceeechhhhhc
Q 014237 227 DGHDG-IVRED--GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR-----VGAIRAALDAEGFQHVSIMSYTAKYA 298 (428)
Q Consensus 227 hGHcG-il~~~--g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGR-----V~aIR~aLD~~Gf~~v~IMSYsaKyA 298 (428)
.-..| =.... +.+.-|+-.+...+|+-.+.++|+|++.---|.|-. +.++|+.+.+.| .+++||---
T Consensus 126 ~~~lgp~~~~~~~~~~t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~-~~lPv~vS~---- 200 (1178)
T TIGR02082 126 TATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKG-RELPIMISG---- 200 (1178)
T ss_pred CccCCCccccCccCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcC-CCCeEEEEE----
Confidence 33222 01001 235668888899999999999999999999999943 445555554445 467776320
Q ss_pred cccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCC---chHHHHHHHHhhCCCCeEEEEec
Q 014237 299 SSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGL---PYLDVIRLLRDKYPLPIAAYQVS 375 (428)
Q Consensus 299 SafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal---~YLDII~~vk~~~~lPvaaYqVS 375 (428)
.++. ....-++-.+..+++..+. ..|+|.|.+==++ .-+.+|+.+++..+.|+.+|-=+
T Consensus 201 -~~~d--------------~~Gr~~~G~~~~~~~~~l~---~~~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNA 262 (1178)
T TIGR02082 201 -TIVD--------------TSGRTLSGQTIEAFLTSLE---HAGIDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNA 262 (1178)
T ss_pred -EEEC--------------CCCeeCCCCcHHHHHHHHh---cCCCCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCC
Confidence 1111 0111123334444443332 5799999987774 34778888888889999999877
Q ss_pred hHHHHHHHHHHCCCCch-hhHHHHHHHHHHHh-cccEe
Q 014237 376 GEYSMIKAGGALKMIDE-QRVMMESLMCLRRA-GADII 411 (428)
Q Consensus 376 GEYaMIkaAa~~G~iD~-~~~vlEsL~~~kRA-GAd~I 411 (428)
|+=. ..|..|+ ...+-|.+..|..+ |+.+|
T Consensus 263 GlP~------~~~~yd~~p~~~a~~~~~~~~~ggv~II 294 (1178)
T TIGR02082 263 GLPN------AFGEYDLTPDELAKALADFAAEGGLNIV 294 (1178)
T ss_pred CCCC------CCCcccCCHHHHHHHHHHHHHhCCCcEE
Confidence 7411 0123342 24567788888887 57775
No 81
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=83.00 E-value=14 Score=40.05 Aligned_cols=199 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHH---HCCCeEEEeeecc
Q 014237 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKD---RYPDLVIYTDVAL 221 (428)
Q Consensus 146 SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~---~~Pdl~VitDVcL 221 (428)
..|| .+++.++ -++.++.|.++|++.|=. ||. ...+| .++++.|.+ .-..+...+-..-
T Consensus 18 Q~~g-~~~s~e~-Kl~ia~~L~~~Gvd~IEvG~p~--as~~d-------------~~~~~~i~~~~l~~~~i~~~~~~~~ 80 (524)
T PRK12344 18 QGEG-ISFSVED-KLRIARKLDELGVDYIEGGWPG--SNPKD-------------TEFFKRAKELKLKHAKLAAFGSTRR 80 (524)
T ss_pred cCCC-CCCCHHH-HHHHHHHHHHcCCCEEEEcCCc--CChhH-------------HHHHHHHHHhCCCCcEEEEEeeccc
Q ss_pred cCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----ecCCCCCCchHHHHHHHHHHCCCCCceeechhhhh
Q 014237 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV----VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKY 297 (428)
Q Consensus 222 c~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADi----VAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKy 297 (428)
--+. ..||.+++.+ .++|+++ ++.||+. ++..|...-=..+-.+-=++||
T Consensus 81 ~~i~-------------~~~d~~~e~~-------~~~g~~~i~i~~~~Sd~h------~~~~l~~s~~e~l~~~~~~v~~ 134 (524)
T PRK12344 81 AGVS-------------AEEDPNLQAL-------LDAGTPVVTIFGKSWDLH------VTEALRTTLEENLAMIRDSVAY 134 (524)
T ss_pred cCCC-------------cccHHHHHHH-------HhCCCCEEEEEECCCHHH------HHHHcCCCHHHHHHHHHHHHHH
Q ss_pred ccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch------HHHHHHHHhhCCCCeEE
Q 014237 298 ASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY------LDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 298 ASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y------LDII~~vk~~~~lPvaa 371 (428)
+-.+ .-+..-++..|.| .|--||.-.-|.++++. +.|||.|.++=-.=| -++|+.+++++++|+..
T Consensus 135 ak~~---G~~v~~~~e~~~D--a~r~d~~~l~~~~~~~~---~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~~v~i~~ 206 (524)
T PRK12344 135 LKAH---GREVIFDAEHFFD--GYKANPEYALATLKAAA---EAGADWVVLCDTNGGTLPHEVAEIVAEVRAAPGVPLGI 206 (524)
T ss_pred HHHc---CCeEEEccccccc--cccCCHHHHHHHHHHHH---hCCCCeEEEccCCCCcCHHHHHHHHHHHHHhcCCeEEE
Q ss_pred EEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 014237 372 YQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 411 (428)
Q Consensus 372 YqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~I 411 (428)
.+-=|.--++--+|.++ +||||.|
T Consensus 207 ---------------H~HND~GlA~ANslaAi-~aGa~~V 230 (524)
T PRK12344 207 ---------------HAHNDSGCAVANSLAAV-EAGARQV 230 (524)
T ss_pred ---------------EECCCCChHHHHHHHHH-HhCCCEE
No 82
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=82.83 E-value=4.8 Score=42.57 Aligned_cols=135 Identities=21% Similarity=0.207 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC--------CCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCC
Q 014237 243 ETVHQLCKQAVSQARAGADVVSP--------SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAP--------SDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~ 314 (428)
-|-+.+++++-.++..|.|+|== -.=++-||.++.++++++. +.
T Consensus 156 lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~-------------------------~e--- 207 (406)
T cd08207 156 LTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHA-------------------------QR--- 207 (406)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHH-------------------------Hh---
Confidence 46788999999999999999731 1112334444444443321 11
Q ss_pred CCCccccCCCCC-ChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEE-echHHHHHHHHHHCCCCch
Q 014237 315 FGDKKTYQMNPA-NYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQ-VSGEYSMIKAGGALKMIDE 392 (428)
Q Consensus 315 fgDRktYQmdpa-N~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaYq-VSGEYaMIkaAa~~G~iD~ 392 (428)
-|.++-|-.+-. ..+|.++.+..=++.|++++||=|...=++.++.+++..++|+.+-- -+|-|. ..-+.|+ +.
T Consensus 208 TG~~~~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~l~IhaHra~~ga~~---r~p~~Gi-s~ 283 (406)
T cd08207 208 TGRKVMYAFNITDDIDEMRRNHDLVVEAGGTCVMVSLNSVGLSGLAALRRHSQLPIHGHRNGWGMLT---RSPALGI-SF 283 (406)
T ss_pred hCCcceEEEecCCCHHHHHHHHHHHHHhCCCeEEEeccccchHHHHHHHhcCCceEEECCCcceecc---cCCCCCC-cH
Confidence 256666766653 45777777777788999999999997779999999998899987421 111110 0012232 22
Q ss_pred hhHHHHHHHHHHHhcccEeeh
Q 014237 393 QRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 393 ~~~vlEsL~~~kRAGAd~IiT 413 (428)
.+ + -+-+|=||||.+++
T Consensus 284 -~v-l--~kl~RLaGaD~~~~ 300 (406)
T cd08207 284 -QA-Y--QKLWRLAGVDHLHV 300 (406)
T ss_pred -HH-H--HHHHHHcCCCcccc
Confidence 22 2 34567799999987
No 83
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=82.27 E-value=76 Score=34.05 Aligned_cols=223 Identities=16% Similarity=0.191 Sum_probs=119.2
Q ss_pred EEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcC-cCCCCCHHHHHHHHHHHCC
Q 014237 133 LFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA-YNDNGLVPRTIWLLKDRYP 211 (428)
Q Consensus 133 lFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A-~~~~g~v~rAIr~iK~~~P 211 (428)
+.|.|-.=+. =..-++..|++.+ +.++.++.+.+.|+.++=+.|- ..-|. +.. .+++ --..+|.|++..|
T Consensus 4 V~I~DtTlRD-G~Qs~~~~~~~t~-dkl~ia~~Ld~~Gv~~IE~~gg---atf~~--~~~f~~e~--p~e~l~~l~~~~~ 74 (448)
T PRK12331 4 IKITETVLRD-GQQSLIATRMTTE-EMLPILEKLDNAGYHSLEMWGG---ATFDA--CLRFLNED--PWERLRKIRKAVK 74 (448)
T ss_pred cEEEECCCCc-cccCcCCcccCHH-HHHHHHHHHHHcCCCEEEecCC---ccchh--hhccCCCC--HHHHHHHHHHhCC
Confidence 5566543111 1224555688886 5899999999999999988652 11221 001 1222 2468899999889
Q ss_pred CeEEE--eee-cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCC
Q 014237 212 DLVIY--TDV-ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGF 285 (428)
Q Consensus 212 dl~Vi--tDV-cLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM---DGRV~aIR~aLD~~Gf 285 (428)
+..+. +-. .+..|+.. -|..++.-.+.|+ ++|.|+|--.|-+ +....+|+.+ .++|+
T Consensus 75 ~~~l~~l~r~~N~~G~~~~-------------pddvv~~~v~~A~---~~Gvd~irif~~lnd~~n~~~~v~~a-k~~G~ 137 (448)
T PRK12331 75 KTKLQMLLRGQNLLGYRNY-------------ADDVVESFVQKSV---ENGIDIIRIFDALNDVRNLETAVKAT-KKAGG 137 (448)
T ss_pred CCEEEEEeccccccccccC-------------chhhHHHHHHHHH---HCCCCEEEEEEecCcHHHHHHHHHHH-HHcCC
Confidence 86543 211 12222111 1333444445543 6799987654433 3333344433 45676
Q ss_pred CCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch------HHHHH
Q 014237 286 QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY------LDVIR 359 (428)
Q Consensus 286 ~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y------LDII~ 359 (428)
.-..-++|+- +|+ .++.-..+-.+++ ++-|||.|-+|=-.-+ -++|+
T Consensus 138 ~v~~~i~~t~-------~p~-----------------~~~~~~~~~a~~l---~~~Gad~I~i~Dt~G~l~P~~v~~lv~ 190 (448)
T PRK12331 138 HAQVAISYTT-------SPV-----------------HTIDYFVKLAKEM---QEMGADSICIKDMAGILTPYVAYELVK 190 (448)
T ss_pred eEEEEEEeec-------CCC-----------------CCHHHHHHHHHHH---HHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 3333356652 121 1222222222222 3469999998844332 57999
Q ss_pred HHHhhCCCCeEEEEechHH----HHHHHHHHCC--CCch---------hhHHHHHHHH-HHHhccc
Q 014237 360 LLRDKYPLPIAAYQVSGEY----SMIKAGGALK--MIDE---------QRVMMESLMC-LRRAGAD 409 (428)
Q Consensus 360 ~vk~~~~lPvaaYqVSGEY----aMIkaAa~~G--~iD~---------~~~vlEsL~~-~kRAGAd 409 (428)
.+|+.+++|+. +|--=-+ +-.-+|+++| ++|- -..-+|+|.. +++-|-+
T Consensus 191 alk~~~~~pi~-~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 191 RIKEAVTVPLE-VHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred HHHHhcCCeEE-EEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 99999999874 4543222 3334466777 4442 1244566554 5555655
No 84
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=82.16 E-value=4.6 Score=42.75 Aligned_cols=138 Identities=24% Similarity=0.259 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCeec--------CCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCC
Q 014237 242 DETVHQLCKQAVSQARAGADVVS--------PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (428)
Q Consensus 242 D~Tl~~Lak~Als~A~AGADiVA--------PSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap 313 (428)
=.|.+.+++++-.++..|.|+|= |..=++-||.++.++++++. +.
T Consensus 151 Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~-------------------------~e-- 203 (407)
T TIGR03332 151 GRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVY-------------------------EQ-- 203 (407)
T ss_pred CCCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------------------------HH--
Confidence 45778899999999999999973 22223334444444443321 11
Q ss_pred CCCCccccCCCCCC-hHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh--hCCCCeEEEEechHHHHHHHHHHCCCC
Q 014237 314 RFGDKKTYQMNPAN-YREALVEAQADESEGADILLVKPGLPYLDVIRLLRD--KYPLPIAAYQVSGEYSMIKAGGALKMI 390 (428)
Q Consensus 314 ~fgDRktYQmdpaN-~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~--~~~lPvaaYqVSGEYaMIkaAa~~G~i 390 (428)
-|.|+-|-+|-.. ..|.++.++.=.++|++.+||=|...=++.++.+++ .+++|+. +|=.|-=++.. .-+.|+
T Consensus 204 -TG~~~~y~~NiT~~~~em~~ra~~a~~~G~~~~mv~~~~~G~~~~~~l~~~~~~~lpih-aHra~~ga~~r-~~~~Gi- 279 (407)
T TIGR03332 204 -TGHKTLYAVNLTGRTFDLKDKAKRAAELGADVLLFNVFAYGLDVLQSLAEDDEIPVPIM-AHPAVSGAYTS-SPFYGF- 279 (407)
T ss_pred -HCCcceEeecCCCCHHHHHHHHHHHHHhCCCEEEEeccccChHHHHHHHhcCCCCcEEE-EecCccccccc-CCCCcc-
Confidence 2778888888764 477778888888899999999999888999999998 5688883 33322111110 112232
Q ss_pred chhhHHHHHHHHHHHhcccEeeh
Q 014237 391 DEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 391 D~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+. ..++=. -+|=||||.|++
T Consensus 280 s~-~~~l~k--l~RLaGaD~~~~ 299 (407)
T TIGR03332 280 SH-SLLLGK--LLRYAGADFSLF 299 (407)
T ss_pred cH-HHHHHH--HHHhcCcCcccc
Confidence 11 122322 356699999986
No 85
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=82.06 E-value=7 Score=38.28 Aligned_cols=180 Identities=20% Similarity=0.232 Sum_probs=104.9
Q ss_pred HHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014237 165 KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (428)
Q Consensus 165 ~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v-----~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~I 239 (428)
-+.+.|.+++.+=|- . -..|..+-+-|++ ...++.|-... ++=|++|. ++|+=
T Consensus 24 ~~e~~Gf~ai~~sg~-~-----~a~s~G~pD~~~lt~~e~~~~~~~I~~~~-~iPv~vD~---------------d~GyG 81 (238)
T PF13714_consen 24 LAERAGFDAIATSGA-G-----VAASLGYPDGGLLTLTEMLAAVRRIARAV-SIPVIVDA---------------DTGYG 81 (238)
T ss_dssp HHHHTT-SEEEEHHH-H-----HHHHTTS-SSS-S-HHHHHHHHHHHHHHS-SSEEEEE----------------TTTSS
T ss_pred HHHHcCCCEEEechH-H-----HHHHcCCCCCCCCCHHHHHHHHHHHHhhh-cCcEEEEc---------------ccccC
Confidence 344569999887221 0 0112223222443 36677777776 88898885 34443
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCC--------------CCchHHHHHHHHHHCCCCCceeechhhhhccccccch
Q 014237 240 MNDETVHQLCKQAVSQARAGADVVSPSDM--------------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (428)
Q Consensus 240 dND~Tl~~Lak~Als~A~AGADiVAPSDM--------------MDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPF 305 (428)
++-..+. +..-.+.+||+.-|--.|= |=+||.+++++.++.| .-|++-+--|..
T Consensus 82 ~~~~~v~---~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~---~~I~ARTDa~~~------ 149 (238)
T PF13714_consen 82 NDPENVA---RTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPD---FVIIARTDAFLR------ 149 (238)
T ss_dssp SSHHHHH---HHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTT---SEEEEEECHHCH------
T ss_pred chhHHHH---HHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCe---EEEEEecccccc------
Confidence 3233333 3334556777766555544 3356666666666655 566665433322
Q ss_pred hhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHH
Q 014237 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 385 (428)
Q Consensus 306 RdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa 385 (428)
....-+||++.+..=.+-|||+|++ |++.-.|-|+++.+.++.|+..-. .+..
T Consensus 150 ------------------~~~~~deaI~R~~aY~eAGAD~ifi-~~~~~~~~i~~~~~~~~~Pl~v~~-~~~~------- 202 (238)
T PF13714_consen 150 ------------------AEEGLDEAIERAKAYAEAGADMIFI-PGLQSEEEIERIVKAVDGPLNVNP-GPGT------- 202 (238)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHTT-SEEEE-TTSSSHHHHHHHHHHHSSEEEEET-TSSS-------
T ss_pred ------------------CCCCHHHHHHHHHHHHHcCCCEEEe-CCCCCHHHHHHHHHhcCCCEEEEc-CCCC-------
Confidence 1224578888888889999999997 666777778999888899977655 2211
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEeehhcHH
Q 014237 386 ALKMIDEQRVMMESLMCLRRAGADIILTYFAL 417 (428)
Q Consensus 386 ~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~ 417 (428)
-++..++..|...|+.-...
T Consensus 203 ------------~~~~eL~~lGv~~v~~~~~~ 222 (238)
T PF13714_consen 203 ------------LSAEELAELGVKRVSYGNSL 222 (238)
T ss_dssp ------------S-HHHHHHTTESEEEETSHH
T ss_pred ------------CCHHHHHHCCCcEEEEcHHH
Confidence 23446778898887754443
No 86
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=81.44 E-value=5 Score=41.21 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCC--CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eec
Q 014237 158 GLVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVA 220 (428)
Q Consensus 158 ~l~~~v~~~~~~GI--~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit-DVc 220 (428)
+-.++++++++.|+ ..+.| +-.+ -....++..|+.||+.+|++.||+ ||+
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~i----D~a~---------gh~~~~~e~I~~ir~~~p~~~vi~g~V~ 149 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITI----DIAH---------GHSDSVINMIQHIKKHLPETFVIAGNVG 149 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEE----ECCC---------CchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 35788999999976 65554 2222 233567889999999999988887 655
No 87
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=81.44 E-value=7 Score=39.33 Aligned_cols=57 Identities=28% Similarity=0.458 Sum_probs=40.8
Q ss_pred cCCceEEe-------cCCC-------chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHh
Q 014237 341 EGADILLV-------KPGL-------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 406 (428)
Q Consensus 341 EGADilMV-------KPal-------~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRA 406 (428)
-|||+|.+ +++. .|.++++.+++..++||.+...-+ + + -+.|....+..+
T Consensus 126 agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~------------~-~---~~~~~a~~l~~~ 189 (334)
T PRK07565 126 AGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPY------------F-S---NLANMAKRLDAA 189 (334)
T ss_pred cCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCC------------c-h---hHHHHHHHHHHc
Confidence 48999987 2222 378999999999999999996421 1 1 134556677788
Q ss_pred cccEeeh
Q 014237 407 GADIILT 413 (428)
Q Consensus 407 GAd~IiT 413 (428)
|+|.|+.
T Consensus 190 G~dgI~~ 196 (334)
T PRK07565 190 GADGLVL 196 (334)
T ss_pred CCCeEEE
Confidence 9998753
No 88
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=81.37 E-value=11 Score=36.97 Aligned_cols=96 Identities=25% Similarity=0.332 Sum_probs=65.4
Q ss_pred CCCCccccCCCCCChHHHHHHHHhchhcCCceEEe-----cCCCc----------hHHHHHHHHhhCCCCeEEEEechHH
Q 014237 314 RFGDKKTYQMNPANYREALVEAQADESEGADILLV-----KPGLP----------YLDVIRLLRDKYPLPIAAYQVSGEY 378 (428)
Q Consensus 314 ~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMV-----KPal~----------YLDII~~vk~~~~lPvaaYqVSGEY 378 (428)
+|-|...| ...++++..+..-+++|||+|=| .|+.. -..+|+.+++.+++|+..= |-..
T Consensus 12 SF~dg~~~----~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD--T~~~ 85 (257)
T TIGR01496 12 SFSDGGRF----LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD--TYRA 85 (257)
T ss_pred CCCCCCCC----CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CCCH
Confidence 35555444 24588999999999999999999 46654 3466777888889998653 3455
Q ss_pred HHHHHHHHCC--CCchhhH--HHHHHHHHHHhcccEeehhc
Q 014237 379 SMIKAGGALK--MIDEQRV--MMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 379 aMIkaAa~~G--~iD~~~~--vlEsL~~~kRAGAd~IiTYf 415 (428)
..+++|.+.| +|+.=.. .-|.+.-+++.|+.+|+.+.
T Consensus 86 ~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeC
Confidence 6777788777 2331000 12355558899999999664
No 89
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=80.78 E-value=13 Score=39.15 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014237 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (428)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit 217 (428)
....+.++.+++.|+.-|.+ +..+ |. + --+...|+.||+.||++.||+
T Consensus 223 ~~~~~r~~~L~~aG~d~I~v----d~a~----g~---~--~~~~~~i~~i~~~~~~~~vi~ 270 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVI----DSSH----GH---S--IYVIDSIKEIKKTYPDLDIIA 270 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEE----ECCC----Cc---H--hHHHHHHHHHHHhCCCCCEEE
Confidence 34688999999999998776 2222 21 1 136689999999999988887
No 90
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=80.66 E-value=8.2 Score=41.95 Aligned_cols=260 Identities=17% Similarity=0.134 Sum_probs=142.6
Q ss_pred CCCCCCChHHHh-hhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCC
Q 014237 106 PRRNRKSPAMRA-SFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDAL 184 (428)
Q Consensus 106 ~RRlR~~~~~R~-lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~ 184 (428)
.|-++-+||-|= .+++.- ++-.++ ....|.+ ++|...|. |+-+.+.++.+.+.|+..|-+|--+.+
T Consensus 56 ~rfl~Edpwerlr~lr~~~--~nt~lq--mL~Rg~N------~vGy~~y~-ddvv~~fv~~a~~~Gidi~RIfd~lnd-- 122 (499)
T PRK12330 56 IRFLNEDPWERLRTFRKLM--PNSRLQ--MLLRGQN------LLGYRHYE-DEVVDRFVEKSAENGMDVFRVFDALND-- 122 (499)
T ss_pred hcccCCCHHHHHHHHHHhC--CCCeEE--EEEcccc------cCCccCcc-hhHHHHHHHHHHHcCCCEEEEEecCCh--
Confidence 466677776441 133322 222222 3344556 88877776 445778899999999999999864322
Q ss_pred CCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 014237 185 KSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (428)
Q Consensus 185 KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVA 264 (428)
- --+..+|+.+|+.-- .+..-+|. |.. + +. |++.+.+.|-...++|||.|+
T Consensus 123 --v---------~nl~~ai~~vk~ag~--~~~~~i~y---t~s-p---------~~---t~e~~~~~a~~l~~~Gad~I~ 173 (499)
T PRK12330 123 --P---------RNLEHAMKAVKKVGK--HAQGTICY---TVS-P---------IH---TVEGFVEQAKRLLDMGADSIC 173 (499)
T ss_pred --H---------HHHHHHHHHHHHhCC--eEEEEEEE---ecC-C---------CC---CHHHHHHHHHHHHHcCCCEEE
Confidence 1 456789999988742 33334443 221 1 12 777777778788899999999
Q ss_pred CCCCCC--------chHHHHHHHHH-H--CC--CCCceeechhhhhccccccchhhhhcCCCC-CCCccccCCCCCC-hH
Q 014237 265 PSDMMD--------GRVGAIRAALD-A--EG--FQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYQMNPAN-YR 329 (428)
Q Consensus 265 PSDMMD--------GRV~aIR~aLD-~--~G--f~~v~IMSYsaKyASafYGPFRdAa~Sap~-fgDRktYQmdpaN-~~ 329 (428)
=.||.= =.|.+||+.+. . -+ ++|+.=|+.+.-.+..=-|- |.++++-. +|-+. +| .-
T Consensus 174 IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGa--d~vDtai~Glg~~a------Gn~at 245 (499)
T PRK12330 174 IKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGV--DVVDTAISSMSLGP------GHNPT 245 (499)
T ss_pred eCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCC--CEEEeecccccccc------cchhH
Confidence 999975 35777887762 1 12 25555555554444333331 22333322 23232 22 12
Q ss_pred HHHHHHH--hchhcCCceEEecCCCchHHHHHHHHhh-------CCCCeEEEEechH-HHHHH-HHHHCCCCchhhHHHH
Q 014237 330 EALVEAQ--ADESEGADILLVKPGLPYLDVIRLLRDK-------YPLPIAAYQVSGE-YSMIK-AGGALKMIDEQRVMME 398 (428)
Q Consensus 330 EAlrE~~--lDi~EGADilMVKPal~YLDII~~vk~~-------~~lPvaaYqVSGE-YaMIk-aAa~~G~iD~~~~vlE 398 (428)
|.+..+. ...+-|-|+-.+.....|+-=||..-.. .+.++.-|||=|. |+-++ -+-+.|..|.=.-|+|
T Consensus 246 E~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~~y~~~~~~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~d~~~ev~~ 325 (499)
T PRK12330 246 ESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRPKYKEFESKTTGVETEIFKSQIPGGMLSNMESQLKQQGAGDRMDEVLE 325 (499)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhcccccccCCCCccccCCCCCCchhhHHHHHHHcChhhHHHHHHH
Confidence 3233222 2333456655555555554444432222 2356666766554 43333 3666787775555555
Q ss_pred HHHHHHHhcccEe-ehhc
Q 014237 399 SLMCLRRAGADII-LTYF 415 (428)
Q Consensus 399 sL~~~kRAGAd~I-iTYf 415 (428)
-.-..++..-+.+ +|=+
T Consensus 326 e~~~Vr~~lG~~~~VTP~ 343 (499)
T PRK12330 326 EVPRVRKDAGYPPLVTPS 343 (499)
T ss_pred HHHHHHHHcCCCCeeCCh
Confidence 5555555444444 4433
No 91
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=80.62 E-value=90 Score=33.81 Aligned_cols=212 Identities=18% Similarity=0.210 Sum_probs=117.4
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTs 226 (428)
-++-.|++.+ +.++.++.+.+.|+.++=+.|- +.-|...+-. +++ --..+|.|++..|+..+.+ ||
T Consensus 16 s~~~~~~~t~-dkl~Ia~~Ld~~Gv~~IE~~gg---atfd~~~~Fl-~e~--p~e~l~~l~~~~~~~~l~~---l~---- 81 (467)
T PRK14041 16 SLIATRMRTE-DMLPALEAFDRMGFYSMEVWGG---ATFDVCVRFL-NEN--PWERLKEIRKRLKNTKIQM---LL---- 81 (467)
T ss_pred CcCCccCCHH-HHHHHHHHHHHcCCCEEEecCC---ccchhhhccc-CCC--HHHHHHHHHHhCCCCEEEE---Ee----
Confidence 3444578886 5899999999999999998652 2333322221 222 3568899998888865431 11
Q ss_pred CCcceeecCCCcc-ccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhccccc
Q 014237 227 DGHDGIVREDGVI-MNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (428)
Q Consensus 227 hGHcGil~~~g~I-dND~Tl~~Lak~Als~A~AGADiVAPSDMM---DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafY 302 (428)
.|+.. -|+- -.|.-++...+.|+ ++|.|+|--.|-+ +.-..+|+.+ .++|+.-..-++|+-
T Consensus 82 r~~N~----~G~~~~~dDvv~~fv~~A~---~~Gvd~irif~~lnd~~n~~~~i~~a-k~~G~~v~~~i~~t~------- 146 (467)
T PRK14041 82 RGQNL----VGYRHYADDVVELFVKKVA---EYGLDIIRIFDALNDIRNLEKSIEVA-KKHGAHVQGAISYTV------- 146 (467)
T ss_pred ccccc----cCcccccchhhHHHHHHHH---HCCcCEEEEEEeCCHHHHHHHHHHHH-HHCCCEEEEEEEecc-------
Confidence 11110 0211 12334455555554 6799987544333 2333344333 355664334456652
Q ss_pred cchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchh-cCCceEEecCCCch------HHHHHHHHhhCCCCeEEEEec
Q 014237 303 GPFREALDSNPRFGDKKTYQMNPANYREALVEAQADES-EGADILLVKPGLPY------LDVIRLLRDKYPLPIAAYQVS 375 (428)
Q Consensus 303 GPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~-EGADilMVKPal~Y------LDII~~vk~~~~lPvaaYqVS 375 (428)
+| . ...|-+.+....+. -|||.|-+|=-.=+ -++|+.+|+++++|+. +|--
T Consensus 147 ~p---------~------------~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~-~H~H 204 (467)
T PRK14041 147 SP---------V------------HTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVE-VHSH 204 (467)
T ss_pred CC---------C------------CCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceE-EEec
Confidence 12 1 11344555554544 59999988744333 4689999999999974 5653
Q ss_pred hH----HHHHHHHHHCC--CCch---------hhHHHHHHHH-HHHhccc
Q 014237 376 GE----YSMIKAGGALK--MIDE---------QRVMMESLMC-LRRAGAD 409 (428)
Q Consensus 376 GE----YaMIkaAa~~G--~iD~---------~~~vlEsL~~-~kRAGAd 409 (428)
-. -+-..+|+++| ++|- -..-+|+|.. +++-|-|
T Consensus 205 nt~GlA~AN~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~~g~~ 254 (467)
T PRK14041 205 CTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRENGKE 254 (467)
T ss_pred CCCCcHHHHHHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHhcCCC
Confidence 22 23344566777 3442 1344566554 4444544
No 92
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=79.91 E-value=10 Score=33.30 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHCCC-CCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEec
Q 014237 271 GRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVK 349 (428)
Q Consensus 271 GRV~aIR~aLD~~Gf-~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK 349 (428)
+-+..+-+.+.+.|. .++.|.||.-.... ......|.+ +-.|-.+..+..+. ........|+|.+.+.
T Consensus 76 ~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~-------~~~~~~p~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~ 144 (189)
T cd08556 76 GLEAKVAELLREYGLEERVVVSSFDHEALR-------ALKELDPEV--PTGLLVDKPPLDPL--LAELARALGADAVNPH 144 (189)
T ss_pred hHHHHHHHHHHHcCCcCCEEEEeCCHHHHH-------HHHHhCCCC--cEEEEeecCcccch--hhhHHHhcCCeEEccC
Confidence 346667777777774 66888887543221 112222432 11222221111111 1124466799999887
Q ss_pred CCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 014237 350 PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 350 Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTY 414 (428)
=....-.+++.+++ .++++.+|-|-- .|.+..+.+.|+|.|+|-
T Consensus 145 ~~~~~~~~i~~~~~-~g~~v~~wtvn~--------------------~~~~~~~~~~GVdgI~TD 188 (189)
T cd08556 145 YKLLTPELVRAAHA-AGLKVYVWTVND--------------------PEDARRLLALGVDGIITD 188 (189)
T ss_pred hhhCCHHHHHHHHH-cCCEEEEEcCCC--------------------HHHHHHHHHCCCCEEecC
Confidence 77778899999998 599999998732 445566778899999984
No 93
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=79.67 E-value=6.3 Score=41.19 Aligned_cols=135 Identities=26% Similarity=0.347 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchh-------hhhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR-------EALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFR-------dAa~Sap~- 314 (428)
-|-+.+++++-.++..|.|+|= |.+++.|- =|-||+ +|++.+-+
T Consensus 140 lsp~~~a~~~y~~~~GG~D~IK----------------DDE~l~~q------------~~~p~~eRv~~~~~a~~~a~~e 191 (366)
T cd08148 140 LNPKYTAEAAYAAALGGLDLIK----------------DDETLTDQ------------PFCPLRDRITEVAAALDRVQEE 191 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCccc----------------cccccCCC------------CCCcHHHHHHHHHHHHHHHHHh
Confidence 4667899999999999999873 33333222 233443 12222111
Q ss_pred CCCccccCCCCCCh-HHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhC--CCCeEEE-EechHHHHHHHHHHCCCC
Q 014237 315 FGDKKTYQMNPANY-REALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY--PLPIAAY-QVSGEYSMIKAGGALKMI 390 (428)
Q Consensus 315 fgDRktYQmdpaN~-~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~--~lPvaaY-qVSGEYaMIkaAa~~G~i 390 (428)
-|-++-|-.+.... +|.++.+..=+++|++++||=|...=++.++.+++.+ ++|+.+- ..+|-|. ..-..| +
T Consensus 192 TG~~~~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~l~IhaHrA~~ga~~---~~~~~G-~ 267 (366)
T cd08148 192 TGEKKLYAVNVTAGTFEIIERAERALELGANMLMVDVLTAGFSALQALAEDFEIDLPIHVHRAMHGAVT---RSKFHG-I 267 (366)
T ss_pred hCCcceEEEEccCCHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHHhCcCCcEEEeccccccccc---cCCCCC-c
Confidence 26677887777544 7878888888999999999999988799999999844 7888752 2223221 112345 3
Q ss_pred chhhHHHHHHHHHHHhcccEeeh
Q 014237 391 DEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 391 D~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+. .++=. -+|=||||.+++
T Consensus 268 ~~--~~l~k--l~RLaGaD~~~~ 286 (366)
T cd08148 268 SM--LVLAK--LLRMAGGDFIHT 286 (366)
T ss_pred CH--HHHHH--HHHHcCCCcccc
Confidence 33 33333 356699999986
No 94
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=79.30 E-value=4.7 Score=40.91 Aligned_cols=59 Identities=27% Similarity=0.398 Sum_probs=44.3
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014237 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (428)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit 217 (428)
++-|+++++ +++++++++.+.|++.|.|-+-..+.. +-.-+.+.++.||+.+|++-+.+
T Consensus 74 ~~~y~l~~e-eI~~~a~~~~~~G~~~v~l~~G~~p~~----------~~~~~~e~i~~Ik~~~p~i~i~~ 132 (351)
T TIGR03700 74 PGAYAMSLE-EIVARVKEAYAPGATEVHIVGGLHPNL----------PFEWYLDMIRTLKEAYPDLHVKA 132 (351)
T ss_pred cccCCCCHH-HHHHHHHHHHHCCCcEEEEecCCCCCC----------CHHHHHHHHHHHHHHCCCceEEe
Confidence 457788996 699999999999999998865322111 11247899999999999887653
No 95
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=79.08 E-value=50 Score=30.01 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=31.3
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH
Q 014237 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (428)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~ 209 (428)
|++.-..+. .+.+.++.+.+.|+..+=+ ++.+ |.-.-+- .+-...++.|++.
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~g~d~i~~-~~~D-------g~~~~~~-~~~~~~v~~i~~~ 54 (210)
T TIGR01163 3 PSILSADFA-RLGEEVKAVEEAGADWIHV-DVMD-------GHFVPNL-TFGPPVLEALRKY 54 (210)
T ss_pred chhhcCCHH-HHHHHHHHHHHcCCCEEEE-cCCC-------CCCCCCc-ccCHHHHHHHHhc
Confidence 445444443 4889999999999999877 3211 0000011 1445788888864
No 96
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=78.80 E-value=8.3 Score=38.89 Aligned_cols=85 Identities=26% Similarity=0.387 Sum_probs=56.6
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCc-eEEe---cCCC---chHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCC
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGAD-ILLV---KPGL---PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 388 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGAD-ilMV---KPal---~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G 388 (428)
+.+.|.+++....|.++++. +.|+. +.+| .|.. -|+|+++.+|+.+ ++.+.+| | ..-+...+...|
T Consensus 64 ~~~~y~ls~eeI~e~~~~~~---~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~--t-~~ei~~~~~~~g 137 (343)
T TIGR03551 64 DADAYLLSLEEIAERAAEAW---KAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAF--S-PMEVYYGARNSG 137 (343)
T ss_pred CCCcccCCHHHHHHHHHHHH---HCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEec--C-HHHHHHHHHHcC
Confidence 45678887766655555544 45765 4444 3322 4599999999987 5887777 2 233334456678
Q ss_pred CCchhhHHHHHHHHHHHhcccEee
Q 014237 389 MIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 389 ~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
.++ -|.|..+|.||.|.|.
T Consensus 138 ~~~-----~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 138 LSV-----EEALKRLKEAGLDSMP 156 (343)
T ss_pred CCH-----HHHHHHHHHhCccccc
Confidence 776 4788899999999876
No 97
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=78.77 E-value=12 Score=39.85 Aligned_cols=227 Identities=19% Similarity=0.182 Sum_probs=127.9
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTs 226 (428)
..|..+|+=| -+.+.++.+.+.|+..|-+|-.+.+ .. + +.++|+..|+.- + .+-+|+| ||.
T Consensus 87 ~~G~~~~pdd-vv~~~v~~A~~~Gvd~irif~~lnd----~~--------n-~~~~v~~ak~~G--~--~v~~~i~-~t~ 147 (448)
T PRK12331 87 LLGYRNYADD-VVESFVQKSVENGIDIIRIFDALND----VR--------N-LETAVKATKKAG--G--HAQVAIS-YTT 147 (448)
T ss_pred ccccccCchh-hHHHHHHHHHHCCCCEEEEEEecCc----HH--------H-HHHHHHHHHHcC--C--eEEEEEE-eec
Confidence 7788888743 4678889999999999999864332 11 1 677899888874 2 2234443 332
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH-CCC--CCceeechhh
Q 014237 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA-EGF--QHVSIMSYTA 295 (428)
Q Consensus 227 hGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~-~Gf--~~v~IMSYsa 295 (428)
. .. .|++.+.+.|-...++|||.|+=.||.= -.|.+||+.++- -+| +|+.=|+-+.
T Consensus 148 ~----------p~---~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN 214 (448)
T PRK12331 148 S----------PV---HTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMT 214 (448)
T ss_pred C----------CC---CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHH
Confidence 1 11 3566666667677889999999999975 356677776530 011 4444466555
Q ss_pred hhccccccchhhhhcCCC-CCCCccccCCCCCChH-HHHHHHH--hchhcCCceEEecCCCchHHHHHHHHhhC----CC
Q 014237 296 KYASSFYGPFREALDSNP-RFGDKKTYQMNPANYR-EALVEAQ--ADESEGADILLVKPGLPYLDVIRLLRDKY----PL 367 (428)
Q Consensus 296 KyASafYGPFRdAa~Sap-~fgDRktYQmdpaN~~-EAlrE~~--lDi~EGADilMVKPal~YLDII~~vk~~~----~l 367 (428)
-.+..-.|- |.++++- .||-+ .+|.. |.+..+. ..++-|-|+=.+.... +.++++++.+ .+
T Consensus 215 ~laAieaGa--d~vD~sv~glg~g------aGN~~tE~lv~~L~~~g~~tgidl~~L~~~~---~~~~~~r~~y~~~~~~ 283 (448)
T PRK12331 215 YLKAIEAGA--DIIDTAISPFAGG------TSQPATESMVAALQDLGYDTGLDLEELSEIA---EYFNPIRDHYREEGIL 283 (448)
T ss_pred HHHHHHcCC--CEEEeeccccCCC------cCCHhHHHHHHHHHhcCCCCCCCHHHHHHHH---HHHHHHHHHHHhhccC
Confidence 555555552 2233332 24444 22321 3333222 2333444433333333 3344555544 13
Q ss_pred C---------eEEEEech-HHHHHH-HHHHCCCCchhhHHHHHHHHHHHhcccEe-ehhcH
Q 014237 368 P---------IAAYQVSG-EYSMIK-AGGALKMIDEQRVMMESLMCLRRAGADII-LTYFA 416 (428)
Q Consensus 368 P---------vaaYqVSG-EYaMIk-aAa~~G~iD~~~~vlEsL~~~kRAGAd~I-iTYfA 416 (428)
| |--||+=| -|+=++ .+.+.|..|.=.-|+|-+-..++-.-+.| +|=+.
T Consensus 284 ~~~~~~~~~~v~~~~~PGG~~snl~~ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~S 344 (448)
T PRK12331 284 NPKVKDVEPKTLIYQVPGGMLSNLLSQLKEQGAEDKYEEVLKEVPKVRADLGYPPLVTPLS 344 (448)
T ss_pred CcccccCCcCeeecCCCcchHhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeeCChh
Confidence 3 45566654 555444 47788988865555655555555555555 55443
No 98
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=78.76 E-value=5.7 Score=38.36 Aligned_cols=77 Identities=29% Similarity=0.387 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCCeecCC-----CC-CCc--hHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCC
Q 014237 245 VHQLCKQAVSQARAGADVVSPS-----DM-MDG--RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (428)
Q Consensus 245 l~~Lak~Als~A~AGADiVAPS-----DM-MDG--RV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fg 316 (428)
+-.-..||+.-|+||||.|||= |. -|| .|..|++.++.+|+ ++.||+=|.|
T Consensus 108 ~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~-~tkIlaAS~r-------------------- 166 (213)
T TIGR00875 108 LVFSAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAP-DTEVIAASVR-------------------- 166 (213)
T ss_pred EecCHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCC-CCEEEEeccC--------------------
Confidence 3334679999999999999992 11 132 36677788888876 6778765544
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHH
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLL 361 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~v 361 (428)
|..+.+..+. -|+|.+-+-| ||+.++
T Consensus 167 ----------~~~~v~~~~~----~G~d~vTip~-----~vl~~l 192 (213)
T TIGR00875 167 ----------HPRHVLEAAL----IGADIATMPL-----DVMQQL 192 (213)
T ss_pred ----------CHHHHHHHHH----cCCCEEEcCH-----HHHHHH
Confidence 5666555433 4999998865 566665
No 99
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=78.59 E-value=2.7 Score=42.14 Aligned_cols=156 Identities=21% Similarity=0.316 Sum_probs=90.1
Q ss_pred hHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014237 158 GLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (428)
Q Consensus 158 ~l~~~v~~~~~-~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~ 236 (428)
..++.+.++++ .|..+|-|=| | .-+..-|+.+.+. .+-|+.=+-|-|=+.+=--|..-+
T Consensus 93 ~a~~na~rl~~eaGa~aVkiEg----------g-------~~~~~~i~~l~~~--gIpV~gHiGltPq~a~~~ggy~~q- 152 (263)
T TIGR00222 93 QALKNAARVMQETGANAVKLEG----------G-------EWLVETVQMLTER--GVPVVGHLGLTPQSVNILGGYKVQ- 152 (263)
T ss_pred HHHHHHHHHHHHhCCeEEEEcC----------c-------HhHHHHHHHHHHC--CCCEEEecCCCceeEeecCCeeec-
Confidence 46666666666 7777776622 1 1122334555443 233444444444333211112211
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeech-hhhhccccccchhhhhcCC---
Q 014237 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFYGPFREALDSN--- 312 (428)
Q Consensus 237 g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSY-saKyASafYGPFRdAa~Sa--- 312 (428)
| .+++..+.+.+.|..+.+|||+.|-...+=.--...|.+.| ++++... |-++++.=.=-|-|.++=.
T Consensus 153 g--rt~~~a~~~i~~A~a~e~AGA~~ivlE~vp~~~a~~It~~l------~iP~iGIGaG~~~dGQvlV~~D~lG~~~~~ 224 (263)
T TIGR00222 153 G--KDEEAAKKLLEDALALEEAGAQLLVLECVPVELAAKITEAL------AIPVIGIGAGNVCDGQILVMHDALGITVGH 224 (263)
T ss_pred C--CCHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHhC------CCCEEeeccCCCCCceeeeHHhhcCCCCCC
Confidence 2 34667889999999999999999988777654445555555 3677766 4457776666666777653
Q ss_pred -CCCCCccccCCCCCChHHHHHHHHhchhcCC
Q 014237 313 -PRFGDKKTYQMNPANYREALVEAQADESEGA 343 (428)
Q Consensus 313 -p~fgDRktYQmdpaN~~EAlrE~~lDi~EGA 343 (428)
|+| -|.|----....||+++-..|+++|.
T Consensus 225 ~pkf--~k~y~~~~~~~~~a~~~y~~~V~~g~ 254 (263)
T TIGR00222 225 IPKF--AKNYLAETETIRAAVRQYMAEVRSGV 254 (263)
T ss_pred CCCc--hHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 555 23443333345667777777777664
No 100
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=78.51 E-value=7.4 Score=41.25 Aligned_cols=136 Identities=32% Similarity=0.387 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchh-------hhhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR-------EALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFR-------dAa~Sap~- 314 (428)
-|-+.+++++-.++..|.|+|= |.+++.|-+- -||+ +|++.+-+
T Consensus 147 Lsp~~~a~~~y~~~~GGvD~IK----------------DDE~l~~q~~------------~p~~eRv~~~~~a~~~a~~e 198 (407)
T PRK09549 147 RDLDYLKEQLRDQALGGVDLVK----------------DDEILFENAL------------TPFEKRIVAGKEVLQEVYET 198 (407)
T ss_pred CCHHHHHHHHHHHHhcCCccee----------------cCcCCCCCCC------------cCHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999873 3444433322 2333 12211111
Q ss_pred CCCccccCCCCC-ChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh--hCCCCeEEE-EechHHHHHHHHHHCCCC
Q 014237 315 FGDKKTYQMNPA-NYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD--KYPLPIAAY-QVSGEYSMIKAGGALKMI 390 (428)
Q Consensus 315 fgDRktYQmdpa-N~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~--~~~lPvaaY-qVSGEYaMIkaAa~~G~i 390 (428)
-|-|+-|-+|-. ...|.++.+..=.++|+..+||=|...=++.++.+++ .++||+.+- ..+|-|. . .-+.|+
T Consensus 199 TG~~~~y~~NiT~~~~em~~ra~~a~~~G~~~~m~~~~~~G~~al~~l~~~~~~~lpIhaHra~~ga~~--r-~~~~Gi- 274 (407)
T PRK09549 199 TGHKTLYAVNLTGRTFELKEKAKRAAEAGADALLFNVFAYGLDVLQSLAEDPEIPVPIMAHPAVSGAYT--P-SPLYGI- 274 (407)
T ss_pred hCCcceEEEecCCCHHHHHHHHHHHHHcCCCeEEEeccccchHHHHHHHhcCCCCcEEEecCCcccccc--c-CCCCcC-
Confidence 267888888775 3477777788888899999999998777999999998 557887632 2222221 1 112332
Q ss_pred chhhHHHHHHHHHHHhcccEeeh
Q 014237 391 DEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 391 D~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+. .+++= +-+|=||||.|++
T Consensus 275 s~-~~~l~--kl~RLaGaD~~~~ 294 (407)
T PRK09549 275 SS-PLLLG--KLLRYAGADFSLF 294 (407)
T ss_pred cH-HHHHH--HHHHHcCCCcccc
Confidence 11 12333 3456699999986
No 101
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=77.85 E-value=2.8 Score=41.58 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=60.4
Q ss_pred cchhhhhcCCCC-CCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCC--CCeEEEEechHHH
Q 014237 303 GPFREALDSNPR-FGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP--LPIAAYQVSGEYS 379 (428)
Q Consensus 303 GPFRdAa~Sap~-fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~--lPvaaYqVSGEYa 379 (428)
|-+..++..+-+ +++.+--.+-..|.+||++.. +.|||+||+=| .+.+-++++.+..+ +|+.|
T Consensus 162 G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~----~~gaDyI~ld~--~~~e~lk~~v~~~~~~ipi~A-------- 227 (265)
T TIGR00078 162 GSIEKAVKRARAAAPFALKIEVEVESLEEAEEAA----EAGADIIMLDN--MKPEEIKEAVQLLKGRVLLEA-------- 227 (265)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHH----HcCCCEEEECC--CCHHHHHHHHHHhcCCCcEEE--------
Confidence 545544433322 233333555566888866553 69999999977 57788888877553 78765
Q ss_pred HHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHHH
Q 014237 380 MIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 423 (428)
Q Consensus 380 MIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~a~wL 423 (428)
.|-|+. |.+..+..+|+|.|-+-.--.-++|+
T Consensus 228 -------sGGI~~-----~ni~~~a~~Gvd~Isvgait~sa~~~ 259 (265)
T TIGR00078 228 -------SGGITL-----DNLEEYAETGVDVISSGALTHSVPAL 259 (265)
T ss_pred -------ECCCCH-----HHHHHHHHcCCCEEEeCHHHcCCCcc
Confidence 456664 45567889999999874333334443
No 102
>PRK08508 biotin synthase; Provisional
Probab=77.66 E-value=24 Score=34.73 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=40.7
Q ss_pred Ccee-echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014237 149 GCYR-LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (428)
Q Consensus 149 Gv~r-~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vi 216 (428)
..|+ ++.+ ++++.++++.+.|++.|.+...-. ...+. .--.+...++.||+++|++.+.
T Consensus 35 ~~y~~~s~e-eI~~~a~~a~~~g~~~~~lv~sg~-~~~~~-------~~e~~~ei~~~ik~~~p~l~i~ 94 (279)
T PRK08508 35 KRYKRKDIE-QIVQEAKMAKANGALGFCLVTSGR-GLDDK-------KLEYVAEAAKAVKKEVPGLHLI 94 (279)
T ss_pred ccccCCCHH-HHHHHHHHHHHCCCCEEEEEeccC-CCCcc-------cHHHHHHHHHHHHhhCCCcEEE
Confidence 3566 5886 699999999999999998742101 01110 1135678999999999987653
No 103
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=77.56 E-value=7.5 Score=41.23 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHcCCCeec--------CCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCC
Q 014237 243 ETVHQLCKQAVSQARAGADVVS--------PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVA--------PSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~ 314 (428)
-|-+.+++++..++..|.|+|= |-.=++-||.++.++++++. +.
T Consensus 157 lsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~-------------------------~e--- 208 (412)
T TIGR03326 157 LSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVE-------------------------AE--- 208 (412)
T ss_pred CChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHH-------------------------HH---
Confidence 4678899999999999999973 22223445555555554321 11
Q ss_pred CCCccccCCCCC-ChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh---hCCCCeEEE-EechHHHHHHHHHHCCC
Q 014237 315 FGDKKTYQMNPA-NYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAY-QVSGEYSMIKAGGALKM 389 (428)
Q Consensus 315 fgDRktYQmdpa-N~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~---~~~lPvaaY-qVSGEYaMIkaAa~~G~ 389 (428)
-|.|+-|-.+-. ..+|.++.++.=+++|++.+||=|...=++.++.+++ .+++|+.+- ..+|-|. ..-+.|+
T Consensus 209 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~---~~~~~Gi 285 (412)
T TIGR03326 209 TGERKEYLANITAPVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRELTEDLGLAIHAHRAMHAAFT---RNPKHGI 285 (412)
T ss_pred hCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEEEEeeccchHHHHHHHHhhccCCeEEEEcCCcccccc---cCCCCcC
Confidence 155666665543 3567777777778899999999999888999999997 457998762 1222211 0112343
Q ss_pred CchhhHHHHHHHHHHHhcccEeehh
Q 014237 390 IDEQRVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~IiTY 414 (428)
+- .++ =+-+|=||||.|++-
T Consensus 286 -s~--~vl--~kl~RLaGaD~~~~~ 305 (412)
T TIGR03326 286 -SM--FAL--AKLYRLIGVDQLHTG 305 (412)
T ss_pred -cH--HHH--HHHHHHcCCCeeeeC
Confidence 22 222 234566999999853
No 104
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=77.27 E-value=10 Score=41.72 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=122.7
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec--ccCCCCCCcceee
Q 014237 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA--LDPYSSDGHDGIV 233 (428)
Q Consensus 156 ~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVc--Lc~YTshGHcGil 233 (428)
++-+.+.++.+.+.|+..|-+|-.+.+ . --+.++|+..|+.-- .+..-+| .|||
T Consensus 90 ddvv~~~v~~a~~~Gvd~irif~~lnd----~---------~n~~~~i~~ak~~G~--~v~~~i~~t~~p~--------- 145 (582)
T TIGR01108 90 DDVVERFVKKAVENGMDVFRIFDALND----P---------RNLQAAIQAAKKHGA--HAQGTISYTTSPV--------- 145 (582)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCc----H---------HHHHHHHHHHHHcCC--EEEEEEEeccCCC---------
Confidence 333566789999999999999854332 1 127788899988753 2322232 3443
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHH-CCC--CCceeechhhhhccccc
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDA-EGF--QHVSIMSYTAKYASSFY 302 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDG--------RV~aIR~aLD~-~Gf--~~v~IMSYsaKyASafY 302 (428)
-|++.+.+.+-...++|||.|+-.||.=. .|.+||+.++- -|+ +|+.=|+-+.=.+..-.
T Consensus 146 ---------~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAvea 216 (582)
T TIGR01108 146 ---------HTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEA 216 (582)
T ss_pred ---------CCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHh
Confidence 16667777777778899999999999753 56777777531 122 55555666555555444
Q ss_pred cchhhhhcCCCC-CCCccccCCCCCChH-HHHHHHH--hchhcCCceEEecCCCchHHHHHHHHhhC----------CCC
Q 014237 303 GPFREALDSNPR-FGDKKTYQMNPANYR-EALVEAQ--ADESEGADILLVKPGLPYLDVIRLLRDKY----------PLP 368 (428)
Q Consensus 303 GPFRdAa~Sap~-fgDRktYQmdpaN~~-EAlrE~~--lDi~EGADilMVKPal~YLDII~~vk~~~----------~lP 368 (428)
|- +.++++-. +|-| .+|.. |.+..+. ...+-|-|+=-+...--| ++++++.+ +.=
T Consensus 217 Ga--~~vd~ai~GlG~~------tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~---~~~v~~~Y~~~~~~~~~~~~~ 285 (582)
T TIGR01108 217 GA--DGIDTAISSMSGG------TSHPPTETMVAALRGTGYDTGLDIELLLEIAAY---FREVRKKYSQFEGQLKGPDSR 285 (582)
T ss_pred CC--CEEEecccccccc------ccChhHHHHHHHHHhcCCCcccCHHHHHHHHHH---HHHHHHHhhcCCCcccCCCcc
Confidence 42 22333322 3433 12221 1111111 122222332222222222 33333333 233
Q ss_pred eEEEEechH--HHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe-ehhcH
Q 014237 369 IAAYQVSGE--YSMIKAGGALKMIDEQRVMMESLMCLRRAGADII-LTYFA 416 (428)
Q Consensus 369 vaaYqVSGE--YaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~I-iTYfA 416 (428)
|..||++|= =.+...+-+.|..|.=.-++|-+...++..-+.+ +|=+.
T Consensus 286 v~~~e~pGG~~snl~~ql~~~g~~~~~~~vl~e~~~v~~~lG~~~~VTP~S 336 (582)
T TIGR01108 286 ILVAQVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTS 336 (582)
T ss_pred EEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECCcc
Confidence 677999998 4555668888988766666777766666666666 55443
No 105
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=76.70 E-value=15 Score=37.08 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHcCCCeEEE----eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH--CCCeEEEeeecccCCCCCCcce
Q 014237 158 GLVQEVAKARDVGVNSVVL----FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR--YPDLVIYTDVALDPYSSDGHDG 231 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L----Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~--~Pdl~VitDVcLc~YTshGHcG 231 (428)
.+.+.|+++.+.|+-.|.| ||.- -.+-...|+...-+..-..+-|++.++. -+++.||+=+. .|.. +
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~~pk~-cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTD--a~~~-~--- 165 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKLGLKK-NSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVE--SLIL-G--- 165 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCCcc-ccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecc--cccc-c---
Confidence 4788899999999999988 4431 0111111122222223345667777765 46788875322 1210 0
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CCCc-hHHHHHHHHHHCCCCCceee
Q 014237 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MMDG-RVGAIRAALDAEGFQHVSIM 291 (428)
Q Consensus 232 il~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD-MMDG-RV~aIR~aLD~~Gf~~v~IM 291 (428)
.| =|++++ .|..|++||||+|-+-. +-|. .+..+-+.++. =|.++++|
T Consensus 166 ----~~---~~eAi~----Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~-~~p~~pl~ 215 (285)
T TIGR02320 166 ----KG---MEDALK----RAEAYAEAGADGIMIHSRKKDPDEILEFARRFRN-HYPRTPLV 215 (285)
T ss_pred ----CC---HHHHHH----HHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhh-hCCCCCEE
Confidence 11 144544 47889999999998763 3332 33344444431 02345555
No 106
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=76.57 E-value=27 Score=38.67 Aligned_cols=219 Identities=18% Similarity=0.186 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014237 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (428)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~ 236 (428)
+-+.+.++.+.+.|+..|-+|--+.+ . --+.++++..|+.- +.+- +|+ .||..-
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd-~------------~n~~~~i~~ak~~G--~~v~--~~i-~~t~~p-------- 149 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALND-V------------RNMEVAIKAAKKAG--AHVQ--GTI-SYTTSP-------- 149 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecCh-H------------HHHHHHHHHHHHcC--CEEE--EEE-EeccCC--------
Confidence 34667889999999999999864332 1 13567888888764 3332 444 233210
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHH-CCC--CCceeechhhhhccccccch
Q 014237 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGPF 305 (428)
Q Consensus 237 g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDG--------RV~aIR~aLD~-~Gf--~~v~IMSYsaKyASafYGPF 305 (428)
. -|++.+.+.+-...++|||+|+-.||.=+ .|.+||+.++- -|+ +|+.=|+-+.=.+..-.|-
T Consensus 150 --~---~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGa- 223 (592)
T PRK09282 150 --V---HTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGV- 223 (592)
T ss_pred --C---CCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCC-
Confidence 1 26778888888889999999999999863 46677776531 122 4455566655555544552
Q ss_pred hhhhcCCC-CCCCccccCCCCCChHHHHHHHHh--chhcCCceEEecCCCchHHHHHHHHhhC----------CCCeEEE
Q 014237 306 REALDSNP-RFGDKKTYQMNPANYREALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKY----------PLPIAAY 372 (428)
Q Consensus 306 RdAa~Sap-~fgDRktYQmdpaN~~EAlrE~~l--Di~EGADilMVKPal~YLDII~~vk~~~----------~lPvaaY 372 (428)
|.++++- .||.|.+ |.+ -|.+..... ..+.|-|+=.+...--| ++++++.+ +.=|..+
T Consensus 224 -d~vD~ai~g~g~~ag-n~~----~e~vv~~L~~~g~~~~idl~~l~~~s~~---~~~~~~~y~~~~~~~~~~~~~v~~~ 294 (592)
T PRK09282 224 -DIIDTAISPLAFGTS-QPP----TESMVAALKGTPYDTGLDLELLFEIAEY---FREVRKKYKQFESEFTIVDTRVLIH 294 (592)
T ss_pred -CEEEeeccccCCCcC-CHh----HHHHHHHHHhCCCCCccCHHHHHHHHHH---HHHHHHHhhcCCCccccCCccEEEE
Confidence 2233322 3555543 222 122222221 22234444333333333 34444333 2336789
Q ss_pred EechH--HHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe-ehhcH
Q 014237 373 QVSGE--YSMIKAGGALKMIDEQRVMMESLMCLRRAGADII-LTYFA 416 (428)
Q Consensus 373 qVSGE--YaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~I-iTYfA 416 (428)
|++|- =.+...+.+.|.+|.=.-++|-+...++-.-+.| +|=+.
T Consensus 295 ~~pGg~~snl~~q~~~~g~~d~~~~vl~e~~~v~~~lG~~~~VTP~S 341 (592)
T PRK09282 295 QVPGGMISNLVSQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTS 341 (592)
T ss_pred cCCCcHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCeECChh
Confidence 99998 4566668899998755556666666666666665 55444
No 107
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=75.89 E-value=17 Score=33.88 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=37.4
Q ss_pred CCccccCCCCCChHHHHHHHHhchhcCCceEEec-------CCCchHHHHHHHHhhCCCCeEE
Q 014237 316 GDKKTYQMNPANYREALVEAQADESEGADILLVK-------PGLPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 316 gDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK-------Pal~YLDII~~vk~~~~lPvaa 371 (428)
|+|.+|--...+..|..++.. +.|+|.|-|= .....+|+|+++++.+++|+.+
T Consensus 19 G~~~~~~~~~~dp~~~a~~~~---~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~ 78 (234)
T cd04732 19 GDYDKKTVYSDDPVEVAKKWE---EAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQV 78 (234)
T ss_pred ccCCCCeEECCCHHHHHHHHH---HcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 667666444556666666644 3799988773 3456799999999999999543
No 108
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=75.70 E-value=22 Score=35.91 Aligned_cols=166 Identities=20% Similarity=0.217 Sum_probs=97.7
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeec
Q 014237 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVA 220 (428)
Q Consensus 146 SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v-----~rAIr~iK~~~Pdl~VitDVc 220 (428)
-+||+| | .|- .+-+.+.|.+++.+=|. . -..|..+-+-|++ ...++.|.+.. ++=|++|.
T Consensus 18 ~~pg~~----D-~lS--Ari~e~aGf~ai~~ss~-~-----va~slG~pD~g~l~~~e~~~~~~~I~~~~-~lPv~aD~- 82 (290)
T TIGR02321 18 TAMAAH----N-PLV--AKLAEQAGFGGIWGSGF-E-----LSASYAVPDANILSMSTHLEMMRAIASTV-SIPLIADI- 82 (290)
T ss_pred Eecccc----C-HHH--HHHHHHcCCCEEEECHH-H-----HHHHCCCCCcccCCHHHHHHHHHHHHhcc-CCCEEEEC-
Confidence 377874 2 122 22344569888777321 0 0012223222333 35667777665 56677774
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC---------CCCc---------hHHHHHHHHHH
Q 014237 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD---------MMDG---------RVGAIRAALDA 282 (428)
Q Consensus 221 Lc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD---------MMDG---------RV~aIR~aLD~ 282 (428)
++|+=+ +..+ ++..-.+.+||+--|--.| +++| .+..||.+.+.
T Consensus 83 --------------d~GyG~-~~~v---~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a 144 (290)
T TIGR02321 83 --------------DTGFGN-AVNV---HYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA 144 (290)
T ss_pred --------------CCCCCC-cHHH---HHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh
Confidence 344433 2223 4444556688984443333 2344 15667777665
Q ss_pred CCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCC-CchHHHHHHH
Q 014237 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPG-LPYLDVIRLL 361 (428)
Q Consensus 283 ~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPa-l~YLDII~~v 361 (428)
..=.+.-|++-+=-|... ..-+|||+.+..=.+-|||+|+| |+ +.-.|-|+++
T Consensus 145 ~~~~d~~I~ARTDa~~~~-------------------------~g~deAI~Ra~aY~eAGAD~ifv-~~~~~~~~ei~~~ 198 (290)
T TIGR02321 145 RADRDFVVIARVEALIAG-------------------------LGQQEAVRRGQAYEEAGADAILI-HSRQKTPDEILAF 198 (290)
T ss_pred CCCCCEEEEEEecccccc-------------------------CCHHHHHHHHHHHHHcCCCEEEe-cCCCCCHHHHHHH
Confidence 433567777764422110 01289999999999999999999 76 4779999999
Q ss_pred HhhCC--CCeE
Q 014237 362 RDKYP--LPIA 370 (428)
Q Consensus 362 k~~~~--lPva 370 (428)
.+.++ +|+.
T Consensus 199 ~~~~~~p~pv~ 209 (290)
T TIGR02321 199 VKSWPGKVPLV 209 (290)
T ss_pred HHhcCCCCCeE
Confidence 99886 5775
No 109
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=75.39 E-value=9.2 Score=38.24 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=52.7
Q ss_pred ccccCCCCCChHHHHHHHHhchhcCCceEEe----cCCC---chHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCC
Q 014237 318 KKTYQMNPANYREALVEAQADESEGADILLV----KPGL---PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 389 (428)
Q Consensus 318 RktYQmdpaN~~EAlrE~~lDi~EGADilMV----KPal---~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~ 389 (428)
...|-+++....+.++++ .+.|+.-+-+ -|.+ -|.++++.+|+++ .+.+-+ ...+|-..+. ..+|+
T Consensus 67 ~~~~~ls~eei~~~~~~~---~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-~s~~ei~~~~--~~~g~ 140 (340)
T TIGR03699 67 PEGYVLSVEEILQKIEEL---VAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS-FSPVEIVYIA--KKEGL 140 (340)
T ss_pred ccccCCCHHHHHHHHHHH---HHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-CCHHHHHHHh--ccCCC
Confidence 345667664444444443 4568754444 3332 2578999999987 577666 3455543332 35677
Q ss_pred CchhhHHHHHHHHHHHhcccEee
Q 014237 390 IDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
.+ -|.+..+|+||.|.+-
T Consensus 141 ~~-----~e~l~~Lk~aG~~~~~ 158 (340)
T TIGR03699 141 SL-----REVLERLKEAGLDSIP 158 (340)
T ss_pred CH-----HHHHHHHHHcCCCcCC
Confidence 63 4788899999999764
No 110
>PRK07360 FO synthase subunit 2; Reviewed
Probab=75.18 E-value=5.9 Score=40.61 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=42.6
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE
Q 014237 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (428)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~V 215 (428)
..|+++.+ ++++.++++.+.|++.|.|-|-..+..+ +-..+...++.||+.+|++.+
T Consensus 87 ~~y~ls~e-eI~~~a~~a~~~G~~~i~l~~G~~p~~~---------~~e~~~~~i~~ik~~~~~i~i 143 (371)
T PRK07360 87 GAFWLTIA-EILEKAAEAVKRGATEVCIQGGLHPAAD---------SLEFYLEILEAIKEEFPDIHL 143 (371)
T ss_pred CCeeCCHH-HHHHHHHHHHhCCCCEEEEccCCCCCCC---------cHHHHHHHHHHHHHhCCCcce
Confidence 45788986 6999999999999999998653111111 234577999999999998654
No 111
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=74.76 E-value=1e+02 Score=37.38 Aligned_cols=220 Identities=16% Similarity=0.130 Sum_probs=128.4
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC---------CeEEEeeecccCCC
Q 014237 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP---------DLVIYTDVALDPYS 225 (428)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P---------dl~VitDVcLc~YT 225 (428)
++++.+.+ -++.|-.-|.- |+.-+..++ ..|-+ ..-.-+..+|++..|++.. ...|..+ +.||+
T Consensus 65 e~I~~IH~~Yl~AGADII~TNTF~a~~~~L~-~ygl~-~~~~eln~~av~LAreAa~~~~~~~~~~~~~VAGS--IGP~g 140 (1229)
T PRK09490 65 DVIEAIHRAYLEAGADIIETNTFNATTIAQA-DYGME-SLVYELNFAAARLAREAADEWTAKTPDKPRFVAGV--LGPTN 140 (1229)
T ss_pred HHHHHHHHHHHHHhCceeecCCCCCCHHHHh-hCChH-HHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEe--cCCCC
Confidence 46666655 57888763322 654221111 11211 0012345567777775542 2566666 55777
Q ss_pred CCCcce--eec-CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-----hHHHHHHHHHHCCCCCceee-chhhh
Q 014237 226 SDGHDG--IVR-EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-----RVGAIRAALDAEGFQHVSIM-SYTAK 296 (428)
Q Consensus 226 shGHcG--il~-~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDG-----RV~aIR~aLD~~Gf~~v~IM-SYsaK 296 (428)
...+.+ +-+ .-+.+.-|+-.+...+|+-.+.++|+|++.---|.|- =+.++|+.+++.| .+++|| |.+
T Consensus 141 ~~~sl~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~-~~lPv~vS~T-- 217 (1229)
T PRK09490 141 RTASISPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELG-VRLPVMISGT-- 217 (1229)
T ss_pred cccccCCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcC-CCCeEEEEEE--
Confidence 544321 111 0134677888899999999999999999999999993 4555566555655 466766 222
Q ss_pred hccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCC-c--hHHHHHHHHhhCCCCeEEEE
Q 014237 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGL-P--YLDVIRLLRDKYPLPIAAYQ 373 (428)
Q Consensus 297 yASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal-~--YLDII~~vk~~~~lPvaaYq 373 (428)
|.|.-+ .-++=.+. |++.... ...|+|.|.+==++ | -..+|+.+.+..+.|+.+|-
T Consensus 218 --------~~d~~G----------r~lsG~~~-ea~~~~l--~~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyP 276 (1229)
T PRK09490 218 --------ITDASG----------RTLSGQTT-EAFWNSL--RHAKPLSIGLNCALGADELRPYVEELSRIADTYVSAHP 276 (1229)
T ss_pred --------EECCCC----------ccCCCCcH-HHHHHHH--hcCCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 222111 11121223 3333333 25789999887664 2 36777888888889999998
Q ss_pred echHHHHHHHHHHCCCCch-hhHHHHHHHHHHHhc-ccEe
Q 014237 374 VSGEYSMIKAGGALKMIDE-QRVMMESLMCLRRAG-ADII 411 (428)
Q Consensus 374 VSGEYaMIkaAa~~G~iD~-~~~vlEsL~~~kRAG-Ad~I 411 (428)
=+|.=. ..|..|+ ...+-|.+..|.+.| +.+|
T Consensus 277 NAGlP~------~~~~yd~tPe~~a~~~~~~~~~G~v~II 310 (1229)
T PRK09490 277 NAGLPN------AFGEYDETPEEMAAQIGEFAESGFLNIV 310 (1229)
T ss_pred CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCCCEE
Confidence 777311 0112232 245678888888888 5655
No 112
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=74.68 E-value=11 Score=40.85 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhh-------hhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRd-------Aa~Sap~- 314 (428)
-|-+.+++++-.++..|.|+|= |.+++.| -=|-||+| |++.+-.
T Consensus 180 Lsp~~~A~~~y~~~~GGvD~IK----------------DDE~l~d------------q~~~p~~eRv~~~~~a~~~a~~e 231 (475)
T CHL00040 180 LSAKNYGRAVYECLRGGLDFTK----------------DDENVNS------------QPFMRWRDRFLFCAEAIYKAQAE 231 (475)
T ss_pred CCHHHHHHHHHHHHcCCCcccc----------------cCccCCC------------CCCCCHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999873 3444422 22445542 2222111
Q ss_pred CCCccccCCCCC--ChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh---hCCCCeEEEE-echHHHHHHHHHHCC
Q 014237 315 FGDKKTYQMNPA--NYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAYQ-VSGEYSMIKAGGALK 388 (428)
Q Consensus 315 fgDRktYQmdpa--N~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~---~~~lPvaaYq-VSGEYaMIkaAa~~G 388 (428)
-|-++.|-++-. ..+|.++.+..=.++|++.+||=|...=++.++.+++ ..++|+.+-- .+|-|. ..-..|
T Consensus 232 TG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~ga~~---r~~~~G 308 (475)
T CHL00040 232 TGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVID---RQKNHG 308 (475)
T ss_pred hCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEeccccccchHHHHHHHhhhcCceEEeccccccccc---cCccCC
Confidence 277888888765 5799999999989999999999999877999999985 5789986522 222111 112345
Q ss_pred CCchhhHHHHHHHHHHHhcccEeeh
Q 014237 389 MIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 389 ~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+- . .++=. -+|=||||.|.+
T Consensus 309 is-~--~vl~K--L~RLaGaD~ih~ 328 (475)
T CHL00040 309 IH-F--RVLAK--ALRMSGGDHIHA 328 (475)
T ss_pred Cc-H--HHHHH--HHHHcCCCcccc
Confidence 42 2 22322 346699999843
No 113
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=74.64 E-value=6.2 Score=35.88 Aligned_cols=156 Identities=22% Similarity=0.309 Sum_probs=91.8
Q ss_pred HHHHHHHCCC----eEEEeeecccCCCCCCcceeecCCCcccc-H-HHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHH
Q 014237 203 IWLLKDRYPD----LVIYTDVALDPYSSDGHDGIVREDGVIMN-D-ETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGA 275 (428)
Q Consensus 203 Ir~iK~~~Pd----l~VitDVcLc~YTshGHcGil~~~g~IdN-D-~Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~a 275 (428)
.+.|.+.+|. .+.+.|.+-.| . ... ..++ . +-.+.+.+.+-..+++|+|.|.=...-+ --+..
T Consensus 13 ~~~l~~~~~~~~~~~v~~~~~~~~p---~----~~~---~~~~~~~~~~~~~~~~~~~l~~~g~d~i~i~C~s~~~~~~~ 82 (216)
T PF01177_consen 13 ERELRRMLPAREGQEVYFHDTRGFP---D----RIK---EEDAGMSAILDRLIEAAEKLEKAGVDAIVIACNSAHPFVDE 82 (216)
T ss_dssp HHHHHHHSTTSCCTEEEEEETTTSC---T----SHH---HHHHHHHHHHHHHHHHHHHHHHTTESEEEESSHHHHHHHHH
T ss_pred HHHHHHHhccccCCEEEEEeCCCCC---C----ccH---HHhcchHHHHHHHHHHHHHHHhCCCCEEEEcCCchhhhHHH
Confidence 4667777776 67777776222 0 111 1111 1 1233777777788889999998777666 33444
Q ss_pred HH-H---------------HHHHCCCCCceeec-hhhhhccccccchhhhhcCCCCC--C-Cccc------cCCCCCChH
Q 014237 276 IR-A---------------ALDAEGFQHVSIMS-YTAKYASSFYGPFREALDSNPRF--G-DKKT------YQMNPANYR 329 (428)
Q Consensus 276 IR-~---------------aLD~~Gf~~v~IMS-YsaKyASafYGPFRdAa~Sap~f--g-DRkt------YQmdpaN~~ 329 (428)
+| + ++.. |.++++|++ |...-..-|-.-|++..+-...+ + .+.+ -+.++. ..
T Consensus 83 ~~~~~~~iPv~~~~~a~~~~~~~-~~~ri~vl~t~~~~~~~~~~~~~~~~~gi~~~~~~~i~~~~~~~~e~~~~~~~-~~ 160 (216)
T PF01177_consen 83 LRKERVGIPVVGIVEAALEAAKA-GGKRIGVLTTYTTEKSPLYEEFIEEAAGIDDEVVAGIHNAIYDVIELGDIPPE-QI 160 (216)
T ss_dssp HHHHHHSSEEEESHHHHHHHHHH-TSSEEEEEESHHHHHHTHHHHHHHHCTTEECEEEEEEEEEHTHHHHTTCTTHH-HH
T ss_pred HhhhcCceEEEeccHHHHHHHHh-cCCEEEEEecCcccchHHHHHHHHHhcCCcHHHHHHHHhhcHHHHhhhcCCHH-HH
Confidence 44 2 2334 889999999 86654433333334432310000 0 1111 123333 45
Q ss_pred HHHHHHHhch--hcCCceEEec-CCCchH-HHHHHHHhhCCCCeE
Q 014237 330 EALVEAQADE--SEGADILLVK-PGLPYL-DVIRLLRDKYPLPIA 370 (428)
Q Consensus 330 EAlrE~~lDi--~EGADilMVK-Pal~YL-DII~~vk~~~~lPva 370 (428)
+.+.++...+ +.|+|.|+.= -.|+++ +.+..+.+..++||.
T Consensus 161 ~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVi 205 (216)
T PF01177_consen 161 EILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVI 205 (216)
T ss_dssp HHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEE
T ss_pred HHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEE
Confidence 5566666565 7999988875 567777 999999999999975
No 114
>PRK00865 glutamate racemase; Provisional
Probab=74.27 E-value=29 Score=33.92 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=40.5
Q ss_pred HHHHHHHHCC--CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 014237 202 TIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (428)
Q Consensus 202 AIr~iK~~~P--dl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD 270 (428)
-++.|++.+| +++-++|..-.||. .-..++=.+++.+.+-.+.++|||.|.=..--+
T Consensus 20 vl~~i~~~lp~~~~iY~~D~~~~PYG------------~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa 78 (261)
T PRK00865 20 VLREIRRLLPDEHIIYVGDTARFPYG------------EKSEEEIRERTLEIVEFLLEYGVKMLVIACNTA 78 (261)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCCC------------CCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchH
Confidence 4678888898 48899999999993 223445555566666667788999886554443
No 115
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=74.02 E-value=5 Score=35.70 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=46.3
Q ss_pred echHHHHHH-------HHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHHHhccC
Q 014237 374 VSGEYSMIK-------AGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEK 427 (428)
Q Consensus 374 VSGEYaMIk-------aAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~a~wL~~~~ 427 (428)
|+-|++-+. .+...|.+|.+..+=|.+..+|-||-|=|+.=.-+|+-.||..+|
T Consensus 74 Vk~Eiaa~~~v~~~Y~~~L~~G~vd~e~~~~~~~~kLk~AGidkV~~E~QkQlda~~~~~k 134 (134)
T PF12010_consen 74 VKNEIAACSNVWSEYYPPLETGLVDPEEALPEFNEKLKAAGIDKVIAELQKQLDAFLAANK 134 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcC
Confidence 555665554 367899999999999999999999999999999999999998664
No 116
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.00 E-value=6.9 Score=39.28 Aligned_cols=126 Identities=21% Similarity=0.185 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCC-CCCcccc
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTY 321 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~-fgDRktY 321 (428)
+-+..+.+.|+...-+.-|=..-|||. |-..+| -.|||=+++++..+-+ +++.+--
T Consensus 135 Pg~R~~~k~Av~~GGg~~HR~~L~d~v----------likdnH-------------i~~~g~~~~~v~~aR~~~~~~~~I 191 (277)
T PRK08072 135 PGLRMFDKYAVVCGGGFNHRFGLYDGV----------MIKDNH-------------IAFCGSITKAVTSVREKLGHMVKI 191 (277)
T ss_pred cchhHHHHHHHHhcCCcccCCCCCceE----------EEchhH-------------HHhhCCHHHHHHHHHHhCCCCCEE
Confidence 445667777776665555556666653 111111 0233435544433222 2333334
Q ss_pred CCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHH
Q 014237 322 QMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 401 (428)
Q Consensus 322 QmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~ 401 (428)
-.-..|.+|+.+.. +.|||+||+.+ .-++-++++.+..+.|+... .-|-|+. |.+.
T Consensus 192 gvsv~tleea~~A~----~~gaDyI~lD~--~~~e~l~~~~~~~~~~i~i~-------------AiGGIt~-----~ni~ 247 (277)
T PRK08072 192 EVETETEEQVREAV----AAGADIIMFDN--RTPDEIREFVKLVPSAIVTE-------------ASGGITL-----ENLP 247 (277)
T ss_pred EEEeCCHHHHHHHH----HcCCCEEEECC--CCHHHHHHHHHhcCCCceEE-------------EECCCCH-----HHHH
Confidence 45556777765553 69999999975 45688888888766443311 2466765 4556
Q ss_pred HHHHhcccEeehhc
Q 014237 402 CLRRAGADIILTYF 415 (428)
Q Consensus 402 ~~kRAGAd~IiTYf 415 (428)
.+..+|+|.|-+-.
T Consensus 248 ~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 248 AYGGTGVDYISLGF 261 (277)
T ss_pred HHHHcCCCEEEECh
Confidence 78889999997643
No 117
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=73.87 E-value=28 Score=34.23 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC---CCCCCcceeec
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP---YSSDGHDGIVR 234 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~---YTshGHcGil~ 234 (428)
...+.++++.+.|.-.|-|=+ . . -....|+.+++.. +.||+=+-+-| -|..|+-+..
T Consensus 90 ~~~~~~~~l~~aGa~gv~iED----~------~-------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~- 149 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIEG----G------E-------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQY- 149 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEcC----c------H-------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeec-
Confidence 589999999999999988722 1 0 1334678887764 55655443322 2233443333
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeech-hhhhccccccchhhhhcC
Q 014237 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFYGPFREALDS 311 (428)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSY-saKyASafYGPFRdAa~S 311 (428)
.....++.+.+.|..|++||||+|-+..+ | ...+++.-++ -+++++.. +.+++..=+=.+.|.++-
T Consensus 150 -----~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-~--~e~~~~i~~~---~~~P~~~~gag~~~dgq~lv~~d~lg~ 216 (240)
T cd06556 150 -----RGDEAGEQLIADALAYAPAGADLIVMECV-P--VELAKQITEA---LAIPLAGIGAGSGTDGQFLVLADAFGI 216 (240)
T ss_pred -----cCHHHHHHHHHHHHHHHHcCCCEEEEcCC-C--HHHHHHHHHh---CCCCEEEEecCcCCCceEEeHHhhhcc
Confidence 22456888889999999999999998755 4 4444444443 35677654 333444334445566655
No 118
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=73.73 E-value=10 Score=35.73 Aligned_cols=90 Identities=27% Similarity=0.377 Sum_probs=62.0
Q ss_pred CChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeE-EEEec---h--------HHHHHHHHHH
Q 014237 326 ANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIA-AYQVS---G--------EYSMIKAGGA 386 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPva-aYqVS---G--------EYaMIkaAa~ 386 (428)
.+..|.+.++..=..+|||+|=+-=.+.= .+.++.+++.+++|+. .|--. | -+.+++.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 86 (224)
T PF01487_consen 7 STLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLERAIR 86 (224)
T ss_dssp SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHHHHHH
Confidence 45666666665444459999988766443 4677788888999976 44432 2 3478899999
Q ss_pred CC--CCchhhH-HHH---HHHHHHHhcccEeehhc
Q 014237 387 LK--MIDEQRV-MME---SLMCLRRAGADIILTYF 415 (428)
Q Consensus 387 ~G--~iD~~~~-vlE---sL~~~kRAGAd~IiTYf 415 (428)
.| |+|-+-- .-| .....++.|..+|++|+
T Consensus 87 ~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H 121 (224)
T PF01487_consen 87 LGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYH 121 (224)
T ss_dssp HTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEec
Confidence 98 6666543 222 26677889999999999
No 119
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=73.38 E-value=61 Score=30.17 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=36.5
Q ss_pred hcCCceEEecCC------C----chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhccc
Q 014237 340 SEGADILLVKPG------L----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 409 (428)
Q Consensus 340 ~EGADilMVKPa------l----~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd 409 (428)
+.|||++.+-+. . .=++.|+++++.+++|+.+ .|-|...+-+.|.+ .+|||
T Consensus 120 ~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~---------------~GGI~~~~~v~~~l----~~Gad 180 (236)
T cd04730 120 AAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIA---------------AGGIADGRGIAAAL----ALGAD 180 (236)
T ss_pred HcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEE---------------ECCCCCHHHHHHHH----HcCCc
Confidence 479999987431 1 2377999999999999876 34454433334433 48999
Q ss_pred Eeeh
Q 014237 410 IILT 413 (428)
Q Consensus 410 ~IiT 413 (428)
.|+.
T Consensus 181 gV~v 184 (236)
T cd04730 181 GVQM 184 (236)
T ss_pred EEEE
Confidence 8764
No 120
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=73.34 E-value=29 Score=37.60 Aligned_cols=113 Identities=24% Similarity=0.273 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eecccC----CCCCCccee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDP----YSSDGHDGI 232 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit-DVcLc~----YTshGHcGi 232 (428)
+-.+.+++|++.|+.-|.+=. + ...+--+-..|+.||+.||++.||+ ||+--+ --..|=|+|
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~--~-----------~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i 314 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDS--S-----------QGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGL 314 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeC--C-----------CCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEE
Confidence 468999999999998877611 1 1111224468999999999988764 664211 012344444
Q ss_pred ecC--CC-----c------cccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCce
Q 014237 233 VRE--DG-----V------IMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS 289 (428)
Q Consensus 233 l~~--~g-----~------IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~ 289 (428)
.-. .| . .....++..+++.+ .+.+..|||=..+..+ +-|.+||. .|-.-|.
T Consensus 315 ~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~---~~~~vpVIadGGI~~~--~di~kAla-~GA~~V~ 378 (505)
T PLN02274 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVASIA---AQHGVPVIADGGISNS--GHIVKALT-LGASTVM 378 (505)
T ss_pred EECCCCCccccCccccccCCCcccHHHHHHHHH---HhcCCeEEEeCCCCCH--HHHHHHHH-cCCCEEE
Confidence 210 01 0 11233455555443 2457888887777766 57777884 6754443
No 121
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=73.10 E-value=19 Score=38.93 Aligned_cols=205 Identities=22% Similarity=0.231 Sum_probs=125.5
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHc 230 (428)
||+--|+-+-++|+++.+.||.-|=+|-- .|+..=++.||+++|+.--. +.. ++| ||..=
T Consensus 92 YrhyaDDvVe~Fv~ka~~nGidvfRiFDA-------------lND~RNl~~ai~a~kk~G~h--~q~--~i~-YT~sP-- 151 (472)
T COG5016 92 YRHYADDVVEKFVEKAAENGIDVFRIFDA-------------LNDVRNLKTAIKAAKKHGAH--VQG--TIS-YTTSP-- 151 (472)
T ss_pred ccCCchHHHHHHHHHHHhcCCcEEEechh-------------ccchhHHHHHHHHHHhcCce--eEE--EEE-eccCC--
Confidence 45555655667889999999998888742 55556688999999987542 222 232 43321
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHHC------CCCCceeechhhh
Q 014237 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDAE------GFQHVSIMSYTAK 296 (428)
Q Consensus 231 Gil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~~------Gf~~v~IMSYsaK 296 (428)
--|++...+.|-.+++.|+|-|+--||-- --|.+||+.++-. --+.++.|+|-+-
T Consensus 152 -----------vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkA 220 (472)
T COG5016 152 -----------VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKA 220 (472)
T ss_pred -----------cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHH
Confidence 22788899999999999999999999853 2588888887521 1133566666332
Q ss_pred hccccccc-hhhhhcCCCCCCCccccCCCCCChHHHHHHHHhc--hhcCCceEEecCCCchHHHHHHHHhhC--------
Q 014237 297 YASSFYGP-FREALDSNPRFGDKKTYQMNPANYREALVEAQAD--ESEGADILLVKPGLPYLDVIRLLRDKY-------- 365 (428)
Q Consensus 297 yASafYGP-FRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lD--i~EGADilMVKPal~YLDII~~vk~~~-------- 365 (428)
.- =|- +=|.+-|.-+.| |-.+| -|.+..+..+ -+.|-|+-.++..-.|+ +++|+++
T Consensus 221 vE---AGvD~iDTAisp~S~g----tsqP~---tEtmv~aL~gt~yDtgld~~~l~~~~~yf---~~vrkkY~~~~~~~~ 287 (472)
T COG5016 221 VE---AGVDGIDTAISPLSGG----TSQPA---TETMVAALRGTGYDTGLDLELLEEIAEYF---REVRKKYKGLLEPQA 287 (472)
T ss_pred HH---hCcchhhhhhccccCC----CCCCc---HHHHHHHhcCCCCCccccHHHHHHHHHHH---HHHHHHHhhccCccc
Confidence 11 111 113333333333 22232 4556655554 34677776666665553 4555555
Q ss_pred ---CCCeEEEEechHH--HHHHHHHHCCCCchhhHHHHH
Q 014237 366 ---PLPIAAYQVSGEY--SMIKAGGALKMIDEQRVMMES 399 (428)
Q Consensus 366 ---~lPvaaYqVSGEY--aMIkaAa~~G~iD~~~~vlEs 399 (428)
+--|-.|||-|-- .|+..--++|.+|.=.-|+|-
T Consensus 288 ~~~d~~ili~qvPGGMlSNl~sQLkeqnaldK~~eVLeE 326 (472)
T COG5016 288 KGVDPRILIYQVPGGMLSNLESQLKEQNALDKLEEVLEE 326 (472)
T ss_pred cCCCCcceEeeCChHHHHHHHHHHHHcchhhHHHHHHHH
Confidence 3456789998752 345556678888865444443
No 122
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=72.57 E-value=54 Score=39.60 Aligned_cols=170 Identities=24% Similarity=0.270 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHcC-CCeecCCC-CCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCC-CC--
Q 014237 242 DETVHQLCKQAVSQARAG-ADVVSPSD-MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FG-- 316 (428)
Q Consensus 242 D~Tl~~Lak~Als~A~AG-ADiVAPSD-MMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~-fg-- 316 (428)
|.|-+.+++++..+++.| +.||.=.. ----.|.+|+++|+..--..++ ...-...+|-|.|+.=--++.+- .|
T Consensus 288 d~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p~~~~--~~~~~~~~S~~~~~~~~~~~~~~~IGER 365 (1229)
T PRK09490 288 DETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLP--EIPVACRLSGLEPLNIDDDSLFVNVGER 365 (1229)
T ss_pred CCCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHHHhcCCCCCCC--CcCcceeeecceEEeecCCCcccccccc
Confidence 446688999999999999 89886322 2223899999999754332211 11111244555555322222221 13
Q ss_pred -----CccccC-CCCCChHHHHHHHHhchhcCCceEEecCCCchHH----------HHHHHHhhCCCCeEEEEechHHHH
Q 014237 317 -----DKKTYQ-MNPANYREALVEAQADESEGADILLVKPGLPYLD----------VIRLLRDKYPLPIAAYQVSGEYSM 380 (428)
Q Consensus 317 -----DRktYQ-mdpaN~~EAlrE~~lDi~EGADilMVKPal~YLD----------II~~vk~~~~lPvaaYqVSGEYaM 380 (428)
.|+-.+ +--.|.++|+..+..-+++|||+|=|=++.+.+| +|+..++.+++|+..= |=....
T Consensus 366 ~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn~g~~~id~~eem~rvv~~i~~~~~~~~vPlsID--S~~~~V 443 (1229)
T PRK09490 366 TNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMID--SSKWEV 443 (1229)
T ss_pred cchhccHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCceEEEe--CCcHHH
Confidence 222221 2336788999999999999999999999987754 3444444567887542 556777
Q ss_pred HHHHHHC--C--CCc------hhhHHHHHHHHHHHhcccEeehhc
Q 014237 381 IKAGGAL--K--MID------EQRVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 381 IkaAa~~--G--~iD------~~~~vlEsL~~~kRAGAd~IiTYf 415 (428)
+++|.+. | +|+ .+.-+.|.+.-+++-||.+|+..+
T Consensus 444 iEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~ 488 (1229)
T PRK09490 444 IEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAF 488 (1229)
T ss_pred HHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 8888875 3 221 122345777789999999999887
No 123
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=72.23 E-value=14 Score=35.69 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.8
Q ss_pred hcCCceEEe-------cCCCch--HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 014237 340 SEGADILLV-------KPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 410 (428)
Q Consensus 340 ~EGADilMV-------KPal~Y--LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~ 410 (428)
+.|||.|.+ ||..+- ++.++.+++.+++||+|- |-|+. |.+..++.+||+.
T Consensus 129 ~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAI---------------GGI~~-----~n~~~~~~~GA~g 188 (221)
T PRK06512 129 ELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQ---------------AGSDL-----ASAVEVAETGAEF 188 (221)
T ss_pred hcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEE---------------eCCCH-----HHHHHHHHhCCCE
Confidence 589999999 554322 789999999999999874 44554 4456778889998
Q ss_pred ee
Q 014237 411 IL 412 (428)
Q Consensus 411 Ii 412 (428)
|-
T Consensus 189 iA 190 (221)
T PRK06512 189 VA 190 (221)
T ss_pred EE
Confidence 73
No 124
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=72.15 E-value=39 Score=36.45 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit 217 (428)
+..+.++.+++.|+..|.+ +.. .|... .+...|+.||+.||++.|++
T Consensus 241 ~~~~~~~~l~~ag~d~i~i----d~a----~G~s~-----~~~~~i~~ik~~~~~~~v~a 287 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVV----DSS----QGNSI-----YQIDMIKKLKSNYPHVDIIA 287 (495)
T ss_pred HHHHHHHHHHHCCCCEEEE----ecC----CCCch-----HHHHHHHHHHhhCCCceEEE
Confidence 4589999999999998776 211 12221 23568999999999988887
No 125
>PRK09234 fbiC FO synthase; Reviewed
Probab=72.15 E-value=8.2 Score=44.34 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=45.5
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014237 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (428)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit 217 (428)
++.|+++.+ ++++.++++++.|++.|.+-|-+.++ ++ --.+.+.+|.||+++|++-|.+
T Consensus 552 ~~~y~Ls~e-eI~~~a~ea~~~G~tev~i~gG~~p~---------~~-~~~y~~lir~IK~~~p~i~i~a 610 (843)
T PRK09234 552 ADAYTLSLD-EVADRAWEAWVAGATEVCMQGGIHPE---------LP-GTGYADLVRAVKARVPSMHVHA 610 (843)
T ss_pred CCcccCCHH-HHHHHHHHHHHCCCCEEEEecCCCCC---------cC-HHHHHHHHHHHHHhCCCeeEEe
Confidence 468899996 69999999999999999986533221 11 1256689999999999988743
No 126
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=71.77 E-value=11 Score=36.10 Aligned_cols=71 Identities=35% Similarity=0.529 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCeecCCCCCCch-----------HHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCC
Q 014237 249 CKQAVSQARAGADVVSPSDMMDGR-----------VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (428)
Q Consensus 249 ak~Als~A~AGADiVAPSDMMDGR-----------V~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgD 317 (428)
..||..-++|||++|+|- =|| |..+++.++..|+ ++-||.=|.|
T Consensus 112 ~~Qa~~Aa~AGA~yvsP~---vgR~~~~g~dg~~~i~~i~~~~~~~~~-~tkil~As~r--------------------- 166 (211)
T cd00956 112 AAQALLAAKAGATYVSPF---VGRIDDLGGDGMELIREIRTIFDNYGF-DTKILAASIR--------------------- 166 (211)
T ss_pred HHHHHHHHHcCCCEEEEe---cChHhhcCCCHHHHHHHHHHHHHHcCC-CceEEecccC---------------------
Confidence 578999999999999993 455 5566666666664 4555543332
Q ss_pred ccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHH
Q 014237 318 KKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLR 362 (428)
Q Consensus 318 RktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk 362 (428)
|..|.+.. .+-|||++-|-| ||++++.
T Consensus 167 ---------~~~ei~~a----~~~Gad~vTv~~-----~vl~~l~ 193 (211)
T cd00956 167 ---------NPQHVIEA----ALAGADAITLPP-----DVLEQLL 193 (211)
T ss_pred ---------CHHHHHHH----HHcCCCEEEeCH-----HHHHHHh
Confidence 56665553 347999998866 4555543
No 127
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=71.46 E-value=22 Score=33.60 Aligned_cols=88 Identities=26% Similarity=0.340 Sum_probs=57.7
Q ss_pred ChHHHHHHHHhchhcCCceEEecCCC-------chHHHHHHHHhhCCCCeEE-EE---------ec-hHH-HHHHHHHHC
Q 014237 327 NYREALVEAQADESEGADILLVKPGL-------PYLDVIRLLRDKYPLPIAA-YQ---------VS-GEY-SMIKAGGAL 387 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVKPal-------~YLDII~~vk~~~~lPvaa-Yq---------VS-GEY-aMIkaAa~~ 387 (428)
+..|++..++... |||+|=+-=.+ .-.+.++.+++.+++|+.. |. .+ .+| ..++.+.+.
T Consensus 11 ~~~e~~~~~~~~~--~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 88 (225)
T cd00502 11 LLEEALSLLELLL--GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEYLELLEEALKL 88 (225)
T ss_pred CHHHHHHHHHHhc--CCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHHHHHHHHHHHH
Confidence 6677777666555 99997442111 1245677888878788764 22 11 234 566777776
Q ss_pred C--CCchhh---HHHHHHHHHHHhcccEeehhcH
Q 014237 388 K--MIDEQR---VMMESLMCLRRAGADIILTYFA 416 (428)
Q Consensus 388 G--~iD~~~---~vlEsL~~~kRAGAd~IiTYfA 416 (428)
| |+|-+- .+.|.+...++.|..+|++|+-
T Consensus 89 ~~d~vDiEl~~~~~~~~~~~~~~~~~kiI~S~H~ 122 (225)
T cd00502 89 GPDYVDIELDSALLEELINSRKKGNTKIIGSYHD 122 (225)
T ss_pred CCCEEEEEecchHHHHHHHHHHhCCCEEEEEecc
Confidence 5 667662 3666777777889999999983
No 128
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=71.22 E-value=11 Score=37.66 Aligned_cols=78 Identities=31% Similarity=0.329 Sum_probs=49.0
Q ss_pred cCCCCCChHHHHHHHHhchhcCCceEEecCCCch--HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHH
Q 014237 321 YQMNPANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMM 397 (428)
Q Consensus 321 YQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y--LDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vl 397 (428)
=-+...|.+||.+.+ +.|||+||+-|-.+= -.+++.++..+ ++|+.| -|-|++
T Consensus 186 IgVev~t~eea~~A~----~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~A---------------sGGI~~----- 241 (272)
T cd01573 186 IVVEVDSLEEALAAA----EAGADILQLDKFSPEELAELVPKLRSLAPPVLLAA---------------AGGINI----- 241 (272)
T ss_pred EEEEcCCHHHHHHHH----HcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEE---------------ECCCCH-----
Confidence 355667888877654 689999999764221 12333344433 467654 455665
Q ss_pred HHHHHHHHhcccEeehhcHHHHHHHH
Q 014237 398 ESLMCLRRAGADIILTYFALQAARCL 423 (428)
Q Consensus 398 EsL~~~kRAGAd~IiTYfA~e~a~wL 423 (428)
|.+..+.++|+|.|.+-.--. ++|+
T Consensus 242 ~ni~~~~~~Gvd~I~vsai~~-a~~~ 266 (272)
T cd01573 242 ENAAAYAAAGADILVTSAPYY-AKPA 266 (272)
T ss_pred HHHHHHHHcCCcEEEEChhhc-Cccc
Confidence 566788999999997654433 4444
No 129
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=70.54 E-value=60 Score=33.97 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHH-HHcCCCeecCCCCCCchHHHHH
Q 014237 199 VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQ-ARAGADVVSPSDMMDGRVGAIR 277 (428)
Q Consensus 199 v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~-A~AGADiVAPSDMMDGRV~aIR 277 (428)
+..-.+.+++..|.-+|++|.=+-+|. .|.+...+-|... .++|||.|=-.|=..-++..||
T Consensus 83 mi~H~~aV~Rga~~a~vVaDmPfgSY~-----------------~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~ 145 (332)
T PLN02424 83 MLVHCRAVARGANRPLLVGDLPFGSYE-----------------SSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAK 145 (332)
T ss_pred HHHHHHHHhccCCCCEEEeCCCCCCCC-----------------CCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHH
Confidence 335567777888999999999776661 1233444445555 5799999988864333678888
Q ss_pred HHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCC-ccccCCC---CCChHHHHHHHHhchhcCCceEEecCCCc
Q 014237 278 AALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD-KKTYQMN---PANYREALVEAQADESEGADILLVKPGLP 353 (428)
Q Consensus 278 ~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgD-RktYQmd---paN~~EAlrE~~lDi~EGADilMVKPal~ 353 (428)
..- ++|. ++|.+ +|=+|+.-. -..|..- .....+.++.+..=.+-||+.|.+ |+.+
T Consensus 146 ~l~-~~GI---PV~gH---------------iGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivL-E~Vp 205 (332)
T PLN02424 146 AIV-EAGI---AVMGH---------------VGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVL-ECVP 205 (332)
T ss_pred HHH-HcCC---CEEEe---------------ecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEE-cCCc
Confidence 766 7774 44443 222222100 0112111 112334444444445679998765 6777
Q ss_pred hHHHHHHHHhhCCCCeEEE
Q 014237 354 YLDVIRLLRDKYPLPIAAY 372 (428)
Q Consensus 354 YLDII~~vk~~~~lPvaaY 372 (428)
-- +.+++.++..+|+...
T Consensus 206 ~~-la~~It~~l~IPtIGI 223 (332)
T PLN02424 206 AP-VAAAITSALQIPTIGI 223 (332)
T ss_pred HH-HHHHHHHhCCCCEEee
Confidence 76 9999999999999754
No 130
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=70.53 E-value=21 Score=28.14 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=47.4
Q ss_pred CChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCC
Q 014237 326 ANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 390 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~i 390 (428)
.|..||+.... +...|++++- |...-+++++.+++.. ..|+..+--..+......+.+.|..
T Consensus 30 ~~~~~~~~~~~---~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~ 95 (112)
T PF00072_consen 30 SSGEEALELLK---KHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGAD 95 (112)
T ss_dssp SSHHHHHHHHH---HSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTES
T ss_pred CCHHHHHHHhc---ccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHCCCC
Confidence 36677776664 4449999998 8899999999999988 6999999877666666655555543
No 131
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=70.35 E-value=1.7e+02 Score=32.33 Aligned_cols=148 Identities=11% Similarity=0.167 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceee---c----hhhhhccccccchhhhhcCCCCC
Q 014237 244 TVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIM---S----YTAKYASSFYGPFREALDSNPRF 315 (428)
Q Consensus 244 Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~IM---S----YsaKyASafYGPFRdAa~Sap~f 315 (428)
+-+.+++.+....++||.||.=..=-. -.|.+||++|+. ..-+..- . =-+..+-.-+..|.+.+.+.+
T Consensus 248 ~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-- 323 (612)
T PRK08645 248 NPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMARALKG--LKPVTEKEVKPRPKVVVTEEPLKAKSSLLDKLKKGK-- 323 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHHHHhcc--CCCccccccccccccccccccccccchHHHHHhCCC--
Confidence 456689999999999999996332222 379999999963 3222211 0 112366678889999997633
Q ss_pred CCccccCCCCCCh--HHHHHHHHhchhc-CCceEEe------cCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHH
Q 014237 316 GDKKTYQMNPANY--REALVEAQADESE-GADILLV------KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGA 386 (428)
Q Consensus 316 gDRktYQmdpaN~--~EAlrE~~lDi~E-GADilMV------KPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~ 386 (428)
+-||.+.|--. .|.+.+....+.+ |.|.+-| .+-+.-+.+.+.+++.+++|+..+- +.
T Consensus 324 --~vs~E~~PPk~~~~~~l~~~~~~L~~~~~d~i~Vtd~~~g~~r~~s~~~a~~l~~~~gi~~i~Hl-tc---------- 390 (612)
T PRK08645 324 --TVIVELDPPKGLDTDKFLEGAKALKEAGVDAITLADNPLARVRISNIALASLIKRELGIEPLVHI-TC---------- 390 (612)
T ss_pred --eEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCcccccCHHHHHHHHHHHhCCCeeeEe-cC----------
Confidence 36888877633 4677777777776 5899887 4566679999999999999988744 32
Q ss_pred CCCCchhh-HHHHHHHHHHHhcccEe
Q 014237 387 LKMIDEQR-VMMESLMCLRRAGADII 411 (428)
Q Consensus 387 ~G~iD~~~-~vlEsL~~~kRAGAd~I 411 (428)
.|..+ .+.+.|..++.+|.+-|
T Consensus 391 ---~d~n~~~l~~~L~~~~~~Gv~nI 413 (612)
T PRK08645 391 ---RDRNLIGLQSHLLGLHALGIRNV 413 (612)
T ss_pred ---CCcCHHHHHHHHHHHHHcCCceE
Confidence 24443 34444777888888755
No 132
>PRK08445 hypothetical protein; Provisional
Probab=70.34 E-value=13 Score=38.03 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=45.3
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit 217 (428)
-++.|.++.+ ++++.++++.+.|.+.|.+-|-.++. + +-.-+.+.++.||+++|++-+++
T Consensus 67 ~~~~y~l~~e-eI~~~~~~a~~~g~~~i~~~gg~~~~---------~-~~e~~~~l~~~Ik~~~p~i~~~a 126 (348)
T PRK08445 67 EDDAYILSFE-EIDKKIEELLAIGGTQILFQGGVHPK---------L-KIEWYENLVSHIAQKYPTITIHG 126 (348)
T ss_pred CCCCeeCCHH-HHHHHHHHHHHcCCCEEEEecCCCCC---------C-CHHHHHHHHHHHHHHCCCcEEEE
Confidence 4577888986 69999999999999998776421221 1 11246689999999999998765
No 133
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=70.17 E-value=11 Score=39.94 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhh-------hhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRd-------Aa~Sap~- 314 (428)
-|-+.+++++..++..|.|+|= |.+++.| -=|-||++ |++.+-+
T Consensus 145 lsp~~~a~~~y~~~~GGiD~IK----------------DDE~l~~------------q~~~p~~eRv~~~~~a~~~a~~e 196 (414)
T cd08206 145 LSPKEYARVVYEALRGGLDFVK----------------DDENQNS------------QPFMRFEDRILFVAEAMDKAEAE 196 (414)
T ss_pred CCHHHHHHHHHHHHhcCCcccc----------------cCccCCC------------CCCCcHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999873 3444432 33445542 2222211
Q ss_pred CCCccccCCCCCC--hHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhh---CCCCeEEE-EechHHHHHHHHHHCC
Q 014237 315 FGDKKTYQMNPAN--YREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK---YPLPIAAY-QVSGEYSMIKAGGALK 388 (428)
Q Consensus 315 fgDRktYQmdpaN--~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~---~~lPvaaY-qVSGEYaMIkaAa~~G 388 (428)
-|.++-|-++-.. .+|.++.++.=.++|+.++||=|...=++.++.+++. +++|+-+- ..+|-|. . .-+.|
T Consensus 197 TG~~~~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ih~HrA~~ga~~--~-~~~~G 273 (414)
T cd08206 197 TGEAKGHYLNITADTPEEMIKRAEFAKELGSVIVMVDGVTAGWTAIQSARRWCPDNGLALHAHRAGHAAFT--R-QKNHG 273 (414)
T ss_pred hCCcceEEeccCCCcHHHHHHHHHHHHHhCCcEEEEeeecccHHHHHHHHHhccccCeEEEEccccceecc--c-CCCCc
Confidence 3778889888764 5899999998899999999999998889999999985 45887642 2222221 0 11234
Q ss_pred CCchhhHHHHHHHHHHHhcccEeeh
Q 014237 389 MIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 389 ~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+ +. .+ .-+-+|=||||.|++
T Consensus 274 i-s~--~v--l~kl~RLaGaD~ih~ 293 (414)
T cd08206 274 I-SM--RV--LAKLARLIGVDHIHT 293 (414)
T ss_pred C-cH--HH--HHHHHHHcCCCcccc
Confidence 3 22 22 233456699999986
No 134
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=70.11 E-value=11 Score=40.25 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhh-------hhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRd-------Aa~Sap~- 314 (428)
-|-+.+++++-.++..|.|+|= |.+++.| -=|-||+| |++.+-.
T Consensus 173 Lsp~~~a~~~y~~~~GGvD~IK----------------DDE~l~~------------q~f~p~~eRv~~~~~ai~~a~~e 224 (424)
T cd08208 173 LPPGEFAELGYQSWLGGLDIAK----------------DDEMLAD------------VDWCPLEERAALLGKARRRAEAE 224 (424)
T ss_pred CCHHHHHHHHHHHHcCCccccc----------------ccccccC------------CCCCCHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999862 3344322 23444442 2222211
Q ss_pred CCCccccCCCCC-ChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEE-EechHHHHHHHHHHCCCCch
Q 014237 315 FGDKKTYQMNPA-NYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY-QVSGEYSMIKAGGALKMIDE 392 (428)
Q Consensus 315 fgDRktYQmdpa-N~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaY-qVSGEYaMIkaAa~~G~iD~ 392 (428)
-|.++-|-++.. ..+|.++.+..=.+.|++++||=|...=++.++.+++.+++|+.+- ..+|-|. ..-..|+ +.
T Consensus 225 TG~~~~ya~NiT~~~~em~~ra~~a~~~G~~~vmv~~~~~G~~al~~L~~~~~l~ihaHra~~ga~~---r~~~~Gi-s~ 300 (424)
T cd08208 225 TGVPKIYLANITDEVDRLMELHDVAVRNGANALLINAMPVGLSAVRMLRKHAQVPLIAHFPFIASFS---RLEKYGI-HS 300 (424)
T ss_pred hCCcceEEEEccCCHHHHHHHHHHHHHhCCCEEEEeeecccHHHHHHHHhcCCCeEEeccCcccccc---CCCCCCC-cH
Confidence 267888877765 4467778888888899999999999877999999999999998642 1222111 0112343 22
Q ss_pred hhHHHHHHHHHHHhcccEeeh
Q 014237 393 QRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 393 ~~~vlEsL~~~kRAGAd~IiT 413 (428)
.+ .-+-+|=+|||.|+.
T Consensus 301 --~v--l~Kl~RLaGaD~ih~ 317 (424)
T cd08208 301 --RV--MTKLQRLAGLDVVIM 317 (424)
T ss_pred --HH--HHHHHHHcCCCeeec
Confidence 22 233456699999985
No 135
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=69.97 E-value=3.6 Score=40.44 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=92.5
Q ss_pred cCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch
Q 014237 193 YNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272 (428)
Q Consensus 193 ~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGR 272 (428)
.-..|. ++|+.||+.|||-.|++|.--+ | .|.+ .+++| ++||||++.=|.+.|
T Consensus 39 ik~eG~--~aV~~lr~~~pd~~IvAD~Kt~-----------D-~G~~--------e~~ma---~~aGAd~~tV~g~A~-- 91 (217)
T COG0269 39 IKAEGM--RAVRALRELFPDKIIVADLKTA-----------D-AGAI--------EARMA---FEAGADWVTVLGAAD-- 91 (217)
T ss_pred HHHhhH--HHHHHHHHHCCCCeEEeeeeec-----------c-hhHH--------HHHHH---HHcCCCEEEEEecCC--
Confidence 334466 8999999999999999997532 2 3433 34444 789999999999987
Q ss_pred HHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecC--
Q 014237 273 VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKP-- 350 (428)
Q Consensus 273 V~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKP-- 350 (428)
+..|.+++..+-=.+ +-+|. -+| ...|..++.++... -|.|++.+==
T Consensus 92 ~~TI~~~i~~A~~~~--~~v~i-----Dl~---------------------~~~~~~~~~~~l~~---~gvd~~~~H~g~ 140 (217)
T COG0269 92 DATIKKAIKVAKEYG--KEVQI-----DLI---------------------GVWDPEQRAKWLKE---LGVDQVILHRGR 140 (217)
T ss_pred HHHHHHHHHHHHHcC--CeEEE-----Eee---------------------cCCCHHHHHHHHHH---hCCCEEEEEecc
Confidence 556666665542111 11110 011 12244555555542 7888888732
Q ss_pred -----CCch-HHHHHHHHhhCC--CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 351 -----GLPY-LDVIRLLRDKYP--LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 351 -----al~Y-LDII~~vk~~~~--lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
|... +|.+..+|+.++ ++|+. .|-|+.+ .+.-|+-.|+|++|-
T Consensus 141 D~q~~G~~~~~~~l~~ik~~~~~g~~vAV---------------aGGI~~~-----~i~~~~~~~~~ivIv 191 (217)
T COG0269 141 DAQAAGKSWGEDDLEKIKKLSDLGAKVAV---------------AGGITPE-----DIPLFKGIGADIVIV 191 (217)
T ss_pred cHhhcCCCccHHHHHHHHHhhccCceEEE---------------ecCCCHH-----HHHHHhcCCCCEEEE
Confidence 3344 788888888876 56654 6777754 556788889999884
No 136
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=69.67 E-value=15 Score=39.63 Aligned_cols=256 Identities=18% Similarity=0.174 Sum_probs=136.0
Q ss_pred CCCCCCChHHHh-hhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCC
Q 014237 106 PRRNRKSPAMRA-SFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDAL 184 (428)
Q Consensus 106 ~RRlR~~~~~R~-lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~ 184 (428)
.|-++-+||-|= .+++.- |+-.++=| .. |.+ .=|...|+ |+-+...++.+.+.||.-+-+|=.
T Consensus 64 ~rfl~edpwerlr~~r~~~--~nt~lqmL-lR-G~n------~vgy~~yp-ddvv~~fv~~a~~~Gidi~Rifd~----- 127 (468)
T PRK12581 64 IRFLNEDPWERLRTLKKGL--PNTRLQML-LR-GQN------LLGYRHYA-DDIVDKFISLSAQNGIDVFRIFDA----- 127 (468)
T ss_pred hcccCCCHHHHHHHHHHhC--CCCceeee-ec-ccc------ccCccCCc-chHHHHHHHHHHHCCCCEEEEccc-----
Confidence 566777777551 133322 33344433 33 554 22333343 333555688899999999888752
Q ss_pred CCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 014237 185 KSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (428)
Q Consensus 185 KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVA 264 (428)
+|+--.+.++|+.+|+..-.. . +|+| ||.. -..|++.+.++|-...++|||.|+
T Consensus 128 --------lnd~~n~~~ai~~ak~~G~~~--~--~~i~-yt~s-------------p~~t~~y~~~~a~~l~~~Gad~I~ 181 (468)
T PRK12581 128 --------LNDPRNIQQALRAVKKTGKEA--Q--LCIA-YTTS-------------PVHTLNYYLSLVKELVEMGADSIC 181 (468)
T ss_pred --------CCCHHHHHHHHHHHHHcCCEE--E--EEEE-EEeC-------------CcCcHHHHHHHHHHHHHcCCCEEE
Confidence 445566788999999875322 2 4554 4331 123777788888888899999999
Q ss_pred CCCCCC--------chHHHHHHHHHH-CCC--CCceeechhhhhccccccchhhhhcCCC-CCCCccccCCCCCChHHHH
Q 014237 265 PSDMMD--------GRVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGPFREALDSNP-RFGDKKTYQMNPANYREAL 332 (428)
Q Consensus 265 PSDMMD--------GRV~aIR~aLD~-~Gf--~~v~IMSYsaKyASafYGPFRdAa~Sap-~fgDRktYQmdpaN~~EAl 332 (428)
-.||.= =.|.+||+..+- -|| +|+.=|+.+.=++..--|- +.++++- .||-+.+ |.+-..--.+|
T Consensus 182 IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGa--d~vD~ai~g~g~gag-N~~tE~lv~~L 258 (468)
T PRK12581 182 IKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGA--DRIDTALSPFSEGTS-QPATESMYLAL 258 (468)
T ss_pred ECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCC--CEEEeeccccCCCcC-ChhHHHHHHHH
Confidence 999864 245566654321 122 4555566655444433341 2233322 3555544 22211112233
Q ss_pred HHHHhchhcCCceEEecCCCchHHHHHHHHhhC-------------CCCeEEEEec-hHHHHHH-HHHHCCCCchhhHHH
Q 014237 333 VEAQADESEGADILLVKPGLPYLDVIRLLRDKY-------------PLPIAAYQVS-GEYSMIK-AGGALKMIDEQRVMM 397 (428)
Q Consensus 333 rE~~lDi~EGADilMVKPal~YLDII~~vk~~~-------------~lPvaaYqVS-GEYaMIk-aAa~~G~iD~~~~vl 397 (428)
++ .+.+-|-|+-.+...--|+ +++++.+ +.=|--||+= |-|+=++ .+.+.|..|.=.-|+
T Consensus 259 ~~--~g~~tgiDl~~L~~~a~~~---~~vr~~y~~~~~~~~~~~~~d~~v~~hqiPGGm~snl~~Ql~~~g~~dr~~ev~ 333 (468)
T PRK12581 259 KE--AGYDITLDETLLEQAANHL---RQARQKYLADGILDPSLLFPDPRTLQYQVPGGMLSNMLSQLKQANAESKLEEVL 333 (468)
T ss_pred Hh--cCCCCCcCHHHHHHHHHHH---HHHHHHhcccccCCCccCCCCcceeeCCCCcchHHHHHHHHHHCCcHhhHHHHH
Confidence 32 2444566654444444443 3343333 1223445554 4455444 477888888654555
Q ss_pred HHHHHHHHhcccEe
Q 014237 398 ESLMCLRRAGADII 411 (428)
Q Consensus 398 EsL~~~kRAGAd~I 411 (428)
|-.-..++..-+.|
T Consensus 334 ~e~~~V~~~lG~p~ 347 (468)
T PRK12581 334 AEVPRVRKDLGYPP 347 (468)
T ss_pred HHHHHHHHHcCCCC
Confidence 54444444444433
No 137
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=69.66 E-value=6.4 Score=38.43 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC-----CC-CCc--hHHHHHHHHHHCCCCCceeechh
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPS-----DM-MDG--RVGAIRAALDAEGFQHVSIMSYT 294 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPS-----DM-MDG--RV~aIR~aLD~~Gf~~v~IMSYs 294 (428)
.|+=.-..||+.-|+|||+.|||= |+ .|| .|..|++.++..|+ ++-||+=|
T Consensus 110 ~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~-~tkILaAS 168 (222)
T PRK12656 110 ATAIYTVFQGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENS-DSKILAAS 168 (222)
T ss_pred EeeeCCHHHHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 444455789999999999999992 22 233 47788889988886 67777643
No 138
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=69.56 E-value=16 Score=35.57 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCCeecCC-CCC-----Cc--hHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCc
Q 014237 247 QLCKQAVSQARAGADVVSPS-DMM-----DG--RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (428)
Q Consensus 247 ~Lak~Als~A~AGADiVAPS-DMM-----DG--RV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDR 318 (428)
.-..||+.-|+|||+.|||= +-| || .|..|++.++..|+ ++-||+=|.|
T Consensus 112 fs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~-~tkILaAS~r---------------------- 168 (220)
T PRK12653 112 YGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAP-QAKVLAASFK---------------------- 168 (220)
T ss_pred cCHHHHHHHHhcCCcEEEeecChHhhcCCChHHHHHHHHHHHHhcCC-CcEEEEEecC----------------------
Confidence 34678888999999999993 111 21 36677777776665 6677754443
Q ss_pred cccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHH
Q 014237 319 KTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLR 362 (428)
Q Consensus 319 ktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk 362 (428)
|.++.+..+. -|+|++-+=| ||+.++.
T Consensus 169 --------~~~~v~~~~~----~G~d~vTip~-----~vl~~l~ 195 (220)
T PRK12653 169 --------TPRQALDCLL----AGCESITLPL-----DVAQQMI 195 (220)
T ss_pred --------CHHHHHHHHH----cCCCEEECCH-----HHHHHHH
Confidence 7777765444 7999998755 5666653
No 139
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=69.56 E-value=13 Score=40.17 Aligned_cols=135 Identities=19% Similarity=0.266 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchh-------hhhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR-------EALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFR-------dAa~Sap~- 314 (428)
-|.+.+++++-.++..|.|+|= |.+++.|- =|-||+ +|++.+-+
T Consensus 173 Lsp~~~a~~~y~~~~GGvD~IK----------------DDE~l~~q------------~f~p~~~Rv~~~~~a~~~a~~e 224 (468)
T PRK04208 173 LSAKNYGRVVYEALRGGLDFTK----------------DDENLNSQ------------PFNRWRDRFLFVMEAIDKAEAE 224 (468)
T ss_pred CCHHHHHHHHHHHHhcCCceee----------------CCCCCCCC------------CCccHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999973 33343222 233443 22222111
Q ss_pred CCCccccCCCCC-C-hHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh---hCCCCeEEEE-echHHHHHHHHHHCC
Q 014237 315 FGDKKTYQMNPA-N-YREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAYQ-VSGEYSMIKAGGALK 388 (428)
Q Consensus 315 fgDRktYQmdpa-N-~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~---~~~lPvaaYq-VSGEYaMIkaAa~~G 388 (428)
-|.++-|-++-. . .+|.++.+..=+++|++++||=|...=++.++.+++ .+++|+-+-- .+|-|. ..-+.|
T Consensus 225 TG~~k~y~~NiT~~~~~em~~ra~~~~e~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~IhaHrA~~ga~~---r~~~~G 301 (468)
T PRK04208 225 TGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIVMIDVVTAGWTALQSLREWCRDNGLALHAHRAMHAAFT---RNPNHG 301 (468)
T ss_pred hCCcceEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeccccccHHHHHHHHhhhcCCcEEEecCCcccccc---cCcCCC
Confidence 267778887744 3 588888888888999999999999888999999997 5589986432 112111 111234
Q ss_pred CCchhhHHHHHHHHHHHhcccEeeh
Q 014237 389 MIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 389 ~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+ +- .++=. -+|=||||.|++
T Consensus 302 i-s~--~vl~K--l~RLaGaD~ih~ 321 (468)
T PRK04208 302 I-SF--RVLAK--LLRLIGVDHLHT 321 (468)
T ss_pred C-CH--HHHHH--HHHHcCCCcccc
Confidence 3 22 22322 356699999986
No 140
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=69.46 E-value=22 Score=31.38 Aligned_cols=55 Identities=31% Similarity=0.392 Sum_probs=39.2
Q ss_pred hhcCCceEEe--------cCC---CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc
Q 014237 339 ESEGADILLV--------KPG---LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 407 (428)
Q Consensus 339 i~EGADilMV--------KPa---l~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAG 407 (428)
.+.|+|.|++ ||+ ..-++.++++++..++|+.+ .|-++. |.+..++++|
T Consensus 112 ~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a---------------~GGi~~-----~~i~~~~~~G 171 (196)
T cd00564 112 EELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVA---------------IGGITP-----ENAAEVLAAG 171 (196)
T ss_pred hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------ECCCCH-----HHHHHHHHcC
Confidence 3469999986 333 13378999999888899876 355654 4566778899
Q ss_pred ccEeeh
Q 014237 408 ADIILT 413 (428)
Q Consensus 408 Ad~IiT 413 (428)
||.|..
T Consensus 172 a~~i~~ 177 (196)
T cd00564 172 ADGVAV 177 (196)
T ss_pred CCEEEE
Confidence 998753
No 141
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=69.36 E-value=10 Score=40.34 Aligned_cols=135 Identities=20% Similarity=0.290 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchh-------hhhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR-------EALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFR-------dAa~Sap~- 314 (428)
-|.+.+++++..++..|.|+|= |.+++.|-+ |-||+ +|++.+-+
T Consensus 144 lsp~~~a~~~y~~~~GGvD~iK----------------DDE~l~~q~------------~~p~~~Rv~~~~~a~~~a~~e 195 (412)
T cd08213 144 LSPEEHAEVAYEALVGGVDLVK----------------DDENLTSQP------------FNRFEERAKESLKARDKAEAE 195 (412)
T ss_pred CCHHHHHHHHHHHHhcCCcccc----------------cCccCCCCC------------CCCHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999873 344443322 33443 22222111
Q ss_pred CCCccccCCCCCC-hHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh---hCCCCeEEE-EechHHHHHHHHHHCCC
Q 014237 315 FGDKKTYQMNPAN-YREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAY-QVSGEYSMIKAGGALKM 389 (428)
Q Consensus 315 fgDRktYQmdpaN-~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~---~~~lPvaaY-qVSGEYaMIkaAa~~G~ 389 (428)
-|.++-|-+|-.. .+|.++.+..=.+.|++++||=+...=++.++.+++ .+++|+-+- ..+|-|. . .-..|+
T Consensus 196 TG~~~~y~~NiT~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ihaHra~~ga~~--r-~~~~Gi 272 (412)
T cd08213 196 TGERKAYLANITAPVREMERRAELVADLGGKYVMIDVVVAGWSALQYLRDLAEDYGLAIHAHRAMHAAFT--R-NPRHGI 272 (412)
T ss_pred hCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEEeeccccChHHHHHHHHhccccCeEEEECCCcceecc--c-CCcCcC
Confidence 2677888877653 478888888888999999999999887999999998 456888652 1222111 0 112343
Q ss_pred CchhhHHHHHHHHHHHhcccEeeh
Q 014237 390 IDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+- . ++= +-+|=||||.|++
T Consensus 273 -s~-~-~l~--kl~RLaGaD~ih~ 291 (412)
T cd08213 273 -SM-L-VLA--KLYRLIGVDQLHI 291 (412)
T ss_pred -cH-H-HHH--HHHHHcCCCcccc
Confidence 22 1 222 2356699999985
No 142
>PLN02877 alpha-amylase/limit dextrinase
Probab=69.22 E-value=87 Score=37.07 Aligned_cols=155 Identities=21% Similarity=0.242 Sum_probs=90.1
Q ss_pred CCceeeEEEeeCCC-Cccc-CCCCCceeechh--hhHHHHHHHHHHcCCCeEEEeecC-----CCCC-------------
Q 014237 127 ANFVYPLFIHEGEE-DTPI-GAMPGCYRLGWR--HGLVQEVAKARDVGVNSVVLFPKV-----PDAL------------- 184 (428)
Q Consensus 127 ~dLI~PlFV~eg~~-~~~I-~SMPGv~r~s~~--~~l~~~v~~~~~~GI~sv~LFgvi-----~~~~------------- 184 (428)
+-.||=+.|.+=.. ...+ ...+|-|.==.+ ...++++++|.++||++|-|-|+- ++..
T Consensus 339 D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~ 418 (970)
T PLN02877 339 DISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEK 418 (970)
T ss_pred ccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhcc
Confidence 44678888886542 2211 335565531111 125788999999999999997752 2100
Q ss_pred -----------------C-------------CcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 014237 185 -----------------K-------------SPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (428)
Q Consensus 185 -----------------K-------------D~~Gs~A~~~~g~v-----~rAIr~iK~~~Pdl~VitDVcLc~YTshGH 229 (428)
. -++||++-||+|.. .+.|+.+.++ .|-||-||-.-.....|+
T Consensus 419 ~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~--GI~VImDVVyNHt~~~g~ 496 (970)
T PLN02877 419 LPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRI--GLRVVLDVVYNHLHSSGP 496 (970)
T ss_pred ccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHC--CCEEEEEECCccccCCCC
Confidence 1 15678888888863 2333333332 599999998766654444
Q ss_pred ce---ee-----------cCCCcccc-----------HHHHHHHHHHHHHHHH-cCCC---eecCCCCCCchHHHHHHHH
Q 014237 230 DG---IV-----------REDGVIMN-----------DETVHQLCKQAVSQAR-AGAD---VVSPSDMMDGRVGAIRAAL 280 (428)
Q Consensus 230 cG---il-----------~~~g~IdN-----------D~Tl~~Lak~Als~A~-AGAD---iVAPSDMMDGRV~aIR~aL 280 (428)
.+ .+ +.+|.+.| -..-+.+.....-.++ -|.| +=.-..+++..+..||++|
T Consensus 497 ~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L 576 (970)
T PLN02877 497 FDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDAL 576 (970)
T ss_pred cchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHH
Confidence 22 12 12343332 1222344444555553 5555 4456667778889999999
Q ss_pred HHC
Q 014237 281 DAE 283 (428)
Q Consensus 281 D~~ 283 (428)
++-
T Consensus 577 ~~i 579 (970)
T PLN02877 577 QSL 579 (970)
T ss_pred HHH
Confidence 885
No 143
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=69.17 E-value=51 Score=33.50 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit 217 (428)
+..+.++.+++.|++.|.+-- .+ |.. .-+.+.|+.||+.+|++.||+
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~----~~----G~~-----~~~~~~i~~ik~~~p~v~Vi~ 140 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDS----AH----GHS-----VYVIEMIKFIKKKYPNVDVIA 140 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEEC----CC----CCc-----HHHHHHHHHHHHHCCCceEEE
Confidence 357889999999998877622 11 211 234678999999999888875
No 144
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=68.56 E-value=13 Score=37.35 Aligned_cols=149 Identities=23% Similarity=0.293 Sum_probs=87.1
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCce-----eechhhhhccccccchhhhhcCCCCCCC--ccccCC
Q 014237 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS-----IMSYTAKYASSFYGPFREALDSNPRFGD--KKTYQM 323 (428)
Q Consensus 251 ~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~-----IMSYsaKyASafYGPFRdAa~Sap~fgD--RktYQm 323 (428)
.|....+||+|+|-=-|.+ +.--.||.+|. -|-|=+| -.|.++..+.--+| =-|||
T Consensus 28 ~A~~~d~agvD~iLVGDSl---------gmv~~G~~sT~~vtld~mi~h~~-------aV~Rga~~~~vv~DmPf~sy~- 90 (261)
T PF02548_consen 28 SARIADEAGVDIILVGDSL---------GMVVLGYDSTLPVTLDEMIYHTK-------AVRRGAPNAFVVADMPFGSYQ- 90 (261)
T ss_dssp HHHHHHHTT-SEEEE-TTH---------HHHTT--SSSTT--HHHHHHHHH-------HHHHH-TSSEEEEE--TTSST-
T ss_pred HHHHHHHcCCCEEEeCCcH---------HHheeCCCCCcCcCHHHHHHHHH-------HHHhcCCCceEEecCCccccc-
Confidence 3455567888888877764 22234554322 2334332 23444443332122 12777
Q ss_pred CCCChHHHHHHHHhchh-cCCceEEecCCCchHHHHHHHHhhCCCCeEEEE--------echHHHHHHHHHHCCC-Cchh
Q 014237 324 NPANYREALVEAQADES-EGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQ--------VSGEYSMIKAGGALKM-IDEQ 393 (428)
Q Consensus 324 dpaN~~EAlrE~~lDi~-EGADilMVKPal~YLDII~~vk~~~~lPvaaYq--------VSGEYaMIkaAa~~G~-iD~~ 393 (428)
.+.++|++.+.+=++ -|||+|-+.-+.-..|+|+.+.+ -.+||.+-= --|-|.. .|= -++.
T Consensus 91 --~s~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~-~GIPV~gHiGLtPQ~~~~~GGyr~------qGk~~~~a 161 (261)
T PF02548_consen 91 --ASPEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVD-AGIPVMGHIGLTPQSVHQLGGYRV------QGKTAEEA 161 (261)
T ss_dssp --SSHHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHH-TT--EEEEEES-GGGHHHHTSS--------CSTSHHHH
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHH-CCCcEEEEecCchhheeccCCceE------EecCHHHH
Confidence 688999999998888 89999999999989999999876 579988631 1222221 111 1344
Q ss_pred hHHHHHHHHHHHhcccEeeh-hcHHHHHHHHhc
Q 014237 394 RVMMESLMCLRRAGADIILT-YFALQAARCLCG 425 (428)
Q Consensus 394 ~~vlEsL~~~kRAGAd~IiT-YfA~e~a~wL~~ 425 (428)
+-++|--..+-.|||-.|+- ---.++|+++.+
T Consensus 162 ~~l~~~A~ale~AGaf~ivlE~vp~~la~~It~ 194 (261)
T PF02548_consen 162 EKLLEDAKALEEAGAFAIVLECVPAELAKAITE 194 (261)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESBBHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccEEeeecCHHHHHHHHHH
Confidence 67889999999999988753 333456666643
No 145
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=67.82 E-value=69 Score=32.67 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=69.9
Q ss_pred hHHHhhhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcC
Q 014237 113 PAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA 192 (428)
Q Consensus 113 ~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A 192 (428)
..+|++.+-+.| ||.|.=+.. |+-...+...|+++.+.|+-.|.|==.+.+ | .+|...
T Consensus 67 ~~~~~I~~~~~l-------Pv~aD~dtG------------yG~~~~v~r~V~~~~~aGaagi~IEDq~~p--K-~cg~~~ 124 (294)
T TIGR02319 67 INAKNIVLAVDV-------PVIMDADAG------------YGNAMSVWRATREFERVGIVGYHLEDQVNP--K-RCGHLE 124 (294)
T ss_pred HHHHHHHhccCC-------CEEEECCCC------------CCCcHHHHHHHHHHHHcCCeEEEEECCCCc--c-ccCCCC
Confidence 355666666653 988864333 111123677889999999999887111100 1 122111
Q ss_pred ---cCCCCCHHHHHHHHHHHC--CCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014237 193 ---YNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (428)
Q Consensus 193 ---~~~~g~v~rAIr~iK~~~--Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD 267 (428)
.-+-.-..+-||+.++.- ||++|++=+-- +. + .| =|+++++ +..|++||||+|-+-.
T Consensus 125 ~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa--~~--~-------~g---~deaI~R----a~aY~eAGAD~ifi~~ 186 (294)
T TIGR02319 125 GKRLISTEEMTGKIEAAVEAREDEDFTIIARTDA--RE--S-------FG---LDEAIRR----SREYVAAGADCIFLEA 186 (294)
T ss_pred CccccCHHHHHHHHHHHHHhccCCCeEEEEEecc--cc--c-------CC---HHHHHHH----HHHHHHhCCCEEEecC
Confidence 111112345566666543 67888753221 21 1 12 2566655 7889999999998866
Q ss_pred CCC-chHHHHHHHH
Q 014237 268 MMD-GRVGAIRAAL 280 (428)
Q Consensus 268 MMD-GRV~aIR~aL 280 (428)
+-| -.|..+.+.+
T Consensus 187 ~~~~~ei~~~~~~~ 200 (294)
T TIGR02319 187 MLDVEEMKRVRDEI 200 (294)
T ss_pred CCCHHHHHHHHHhc
Confidence 554 2344444444
No 146
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=67.53 E-value=13 Score=36.78 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=68.6
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhccccccch
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM--------MDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPF 305 (428)
++||.|| -+.++.|++- +.+.|+|-|.+-+- .+=|...++...+..+ .+++|+.-..
T Consensus 13 ~~dg~iD-~~~l~~l~~~---l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-~~~pvi~gv~---------- 77 (289)
T cd00951 13 DADGSFD-EDAYRAHVEW---LLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-GRVPVLAGAG---------- 77 (289)
T ss_pred CCCCCcC-HHHHHHHHHH---HHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCCEEEecC----------
Confidence 3456676 3445555544 45689998876553 3456777777777654 4677763211
Q ss_pred hhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEech
Q 014237 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 376 (428)
Q Consensus 306 RdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 376 (428)
. |.+|+++.+..=.+-|||.+|+=|-..+ .+-.+.+.+.+++|+..||-+|
T Consensus 78 -------------------~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g 135 (289)
T cd00951 78 -------------------Y-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRAN 135 (289)
T ss_pred -------------------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 1 3455555555556679999999765332 3344567777889999999777
No 147
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=67.53 E-value=54 Score=34.47 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcC--CCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEee
Q 014237 159 LVQEVAKARDVG--VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218 (428)
Q Consensus 159 l~~~v~~~~~~G--I~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitD 218 (428)
-.+.++.+++.| +..|.| +.+ .|. .-.+...|+.||+.||++.||+=
T Consensus 108 d~er~~~L~~a~~~~d~ivi----D~A----hGh-----s~~~i~~ik~ir~~~p~~~viaG 156 (343)
T TIGR01305 108 DLEKMTSILEAVPQLKFICL----DVA----NGY-----SEHFVEFVKLVREAFPEHTIMAG 156 (343)
T ss_pred HHHHHHHHHhcCCCCCEEEE----ECC----CCc-----HHHHHHHHHHHHhhCCCCeEEEe
Confidence 467778888875 554443 222 121 23466789999999999888753
No 148
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=67.41 E-value=14 Score=35.99 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC-CCC-----Cc--hHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCC
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPS-DMM-----DG--RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPS-DMM-----DG--RV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~ 314 (428)
.|+=.-..||+.-|+|||+.|||= +-| || .|..|++.++..|+ ++-||+=|.|
T Consensus 108 ~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~-~tkILaAS~r------------------ 168 (220)
T PRK12655 108 GTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAP-ESMVLAASFK------------------ 168 (220)
T ss_pred EeEecCHHHHHHHHHcCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCC-CcEEEEEecC------------------
Confidence 344444678999999999999993 111 22 25566677776665 5666654443
Q ss_pred CCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHH
Q 014237 315 FGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLL 361 (428)
Q Consensus 315 fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~v 361 (428)
|.++.+..+. -|+|++-+=| ||++++
T Consensus 169 ------------~~~~v~~~~~----~G~d~vTip~-----~vl~~l 194 (220)
T PRK12655 169 ------------TPRQALDCLL----AGCQSITLPL-----DVAQQM 194 (220)
T ss_pred ------------CHHHHHHHHH----cCCCEEECCH-----HHHHHH
Confidence 5566665443 6999998765 566554
No 149
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=67.40 E-value=35 Score=36.84 Aligned_cols=223 Identities=18% Similarity=0.174 Sum_probs=126.6
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 014237 155 WRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (428)
Q Consensus 155 ~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~ 234 (428)
.++-+...++.+.+.|+..|-+|--+.+ . --+.++|+..|+.-- .|. .|+| ||..-
T Consensus 93 ~dDvv~~fv~~A~~~Gvd~irif~~lnd-~------------~n~~~~i~~ak~~G~--~v~--~~i~-~t~~p------ 148 (467)
T PRK14041 93 ADDVVELFVKKVAEYGLDIIRIFDALND-I------------RNLEKSIEVAKKHGA--HVQ--GAIS-YTVSP------ 148 (467)
T ss_pred cchhhHHHHHHHHHCCcCEEEEEEeCCH-H------------HHHHHHHHHHHHCCC--EEE--EEEE-eccCC------
Confidence 3432444589999999999999864332 1 126778888887643 333 4442 32210
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH-CCC--CCceeechhhhhcccccc
Q 014237 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYG 303 (428)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~-~Gf--~~v~IMSYsaKyASafYG 303 (428)
.. |++.+.+.|-...++|||.|+=.||.= -.|.+||+.++- -+| +|+.=|+-+.-.+..-.|
T Consensus 149 ----~~---t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaG 221 (467)
T PRK14041 149 ----VH---TLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAG 221 (467)
T ss_pred ----CC---CHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhC
Confidence 11 467777777778889999999999974 356777777530 122 555556666656555555
Q ss_pred chhhhhcCCC-CCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhC-CCC---------eEEE
Q 014237 304 PFREALDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY-PLP---------IAAY 372 (428)
Q Consensus 304 PFRdAa~Sap-~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~-~lP---------vaaY 372 (428)
- |.++++- .||-+.+ |.+-..--.+|+. ...+-|-|+-.+...--| ++++++++ .+| |.-|
T Consensus 222 a--d~vD~sv~~~g~gag-N~atE~lv~~L~~--~g~~tgiDl~~L~~~~~~---~~~vr~~y~~~~~~~~~~~~~v~~~ 293 (467)
T PRK14041 222 A--DMFDTAISPFSMGTS-QPPFESMYYAFRE--NGKETDFDRKALKFLVEY---FTKVREKYSEYDVGMKSPDSRILVS 293 (467)
T ss_pred C--CEEEeeccccCCCCC-ChhHHHHHHHHHh--cCCCCCcCHHHHHHHHHH---HHHHHHHHhhcCCCCCCCCcCeeeC
Confidence 2 2234333 3666655 3322222223332 234456665444433333 44444444 233 3345
Q ss_pred Eec-hHHHHHH-HHHHCCCCchhhHHHHHHHHHHHhcccEe-ehhcH
Q 014237 373 QVS-GEYSMIK-AGGALKMIDEQRVMMESLMCLRRAGADII-LTYFA 416 (428)
Q Consensus 373 qVS-GEYaMIk-aAa~~G~iD~~~~vlEsL~~~kRAGAd~I-iTYfA 416 (428)
|+= |-|+=++ .+.+.|..|.=.-|+|-+-..++..-+.| +|=+.
T Consensus 294 q~PGG~~snl~~Ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~S 340 (467)
T PRK14041 294 QIPGGMYSNLVKQLKEQKMLHKLDKVLEEVPRVRKDLGYPPLVTPTS 340 (467)
T ss_pred CCCcchHHHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCcCCChh
Confidence 554 4565444 47788998866666666666666666666 55443
No 150
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=67.21 E-value=76 Score=31.51 Aligned_cols=109 Identities=18% Similarity=0.299 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHH------------------HHHHHHHCCCeEEEeee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRT------------------IWLLKDRYPDLVIYTDV 219 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rA------------------Ir~iK~~~Pdl~VitDV 219 (428)
...+.++.+.+.|+.-+=| |+ | .-|+.+ ||++.|. ++.+++..+++=++.-.
T Consensus 27 ~~~~~~~~l~~~Gad~iEl-Gi-P--fSDP~a------DGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~ 96 (258)
T PRK13111 27 TSLEIIKALVEAGADIIEL-GI-P--FSDPVA------DGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMT 96 (258)
T ss_pred HHHHHHHHHHHCCCCEEEE-CC-C--CCCCcc------cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4788889999999988777 74 6 345543 4554432 34444455664333211
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhh
Q 014237 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (428)
Q Consensus 220 cLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsa 295 (428)
..-+.-.. .++...+ ..+++|+|-|---|+-=......+++++++|+.-|.++|.++
T Consensus 97 Y~N~i~~~----------------G~e~f~~---~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 97 YYNPIFQY----------------GVERFAA---DAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred cccHHhhc----------------CHHHHHH---HHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 11111111 1222322 346789987777788778999999999999999998888776
No 151
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=67.14 E-value=14 Score=35.04 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCCCChHHHHHHHHhchhcCCceEEecCCCch-----HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHH
Q 014237 323 MNPANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMM 397 (428)
Q Consensus 323 mdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-----LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vl 397 (428)
+|+.+.++|++=+. .+.+-. .++|+++++ .++|+.+++.. .||++ ....-|--.++.
T Consensus 5 LD~~~~~~a~~i~~-~~~~~v--~~iKvg~~l~~~~g~~~i~~l~~~~-~~i~~--------------DlK~~DIg~tv~ 66 (216)
T cd04725 5 LDPPDEEFALALID-ALGPYV--CAVKVGLELFEAAGPEIVKELRELG-FLVFL--------------DLKLGDIPNTVA 66 (216)
T ss_pred eCCCCHHHHHHHHH-hcCCcc--cEEEECHHHHHhcCHHHHHHHHHCC-CcEEE--------------EeecCchHHHHH
Confidence 58888888877554 355544 479999976 68899999977 77774 334445555666
Q ss_pred HHHHHHHHhcccEee
Q 014237 398 ESLMCLRRAGADIIL 412 (428)
Q Consensus 398 EsL~~~kRAGAd~Ii 412 (428)
.....+..+|||++.
T Consensus 67 ~~~~~~~~~gad~~T 81 (216)
T cd04725 67 AAAEALLGLGADAVT 81 (216)
T ss_pred HHHHHHHhcCCCEEE
Confidence 666666666777653
No 152
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=67.03 E-value=15 Score=37.16 Aligned_cols=64 Identities=28% Similarity=0.390 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCC-C--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC---CCeecCCCCCCch
Q 014237 199 VPRTIWLLKDRYP-D--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG---ADVVSPSDMMDGR 272 (428)
Q Consensus 199 v~rAIr~iK~~~P-d--l~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AG---ADiVAPSDMMDGR 272 (428)
+.+|++..|+.+| + +.|-+| +-++ .+++|+..+++| +|+| |.|..
T Consensus 170 ~~~A~~~~~~~~p~~~~i~vevd----------------------t~~~---~v~eal~~~~~~~~~~d~I----~lDn~ 220 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIALID----------------------TFND---EKEEALKAAKALGDKLDGV----RLDTP 220 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEEEEe----------------------ecCc---chHHHHHHHHHhCCCCcEE----EECCC
Confidence 6789999999998 3 223222 1111 235677777775 8888 55554
Q ss_pred ----------HHHHHHHHHHCCCCCceee
Q 014237 273 ----------VGAIRAALDAEGFQHVSIM 291 (428)
Q Consensus 273 ----------V~aIR~aLD~~Gf~~v~IM 291 (428)
+..+|++|++.|+.++.|.
T Consensus 221 ~~~~G~~~~~~~~~~~~l~~~g~~~~~ie 249 (302)
T cd01571 221 SSRRGVFRYLIREVRWALDIRGYKHVKIF 249 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9999999999998776554
No 153
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=66.59 E-value=78 Score=31.17 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=51.5
Q ss_pred hhcCCceEEecCCCch---------------------------HHHHHHHHhh-CCCCeEEEEec------hHHHHHHHH
Q 014237 339 ESEGADILLVKPGLPY---------------------------LDVIRLLRDK-YPLPIAAYQVS------GEYSMIKAG 384 (428)
Q Consensus 339 i~EGADilMVKPal~Y---------------------------LDII~~vk~~-~~lPvaaYqVS------GEYaMIkaA 384 (428)
++.|||+|=+ |.|| |++++.+|+. +++|+.-.-+. |.-..++.+
T Consensus 34 ~~~Gad~iEl--GiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~ 111 (256)
T TIGR00262 34 IEAGADALEL--GVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKC 111 (256)
T ss_pred HHcCCCEEEE--CCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHH
Confidence 4679999866 6666 8889999876 68886544443 667788888
Q ss_pred HHCCCC-----chh-hHHHHHHHHHHHhcccEe
Q 014237 385 GALKMI-----DEQ-RVMMESLMCLRRAGADII 411 (428)
Q Consensus 385 a~~G~i-----D~~-~~vlEsL~~~kRAGAd~I 411 (428)
+++|.- |+- +-..|.+..++..|.+.|
T Consensus 112 ~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 112 KEVGVDGVLVADLPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred HHcCCCEEEECCCChHHHHHHHHHHHHCCCcEE
Confidence 888862 221 345677888899999976
No 154
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.57 E-value=16 Score=35.10 Aligned_cols=52 Identities=33% Similarity=0.534 Sum_probs=39.8
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE
Q 014237 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (428)
Q Consensus 141 ~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~V 215 (428)
...|..+||++ -..++..+.+.|..-|-|||. + .-| ...|+.+|..||++-+
T Consensus 107 ~~~i~~iPG~~-------T~~E~~~A~~~Gad~vklFPa-~-------------~~G--~~~ik~l~~~~p~ip~ 158 (213)
T PRK06552 107 LYQIPYLPGCM-------TVTEIVTALEAGSEIVKLFPG-S-------------TLG--PSFIKAIKGPLPQVNV 158 (213)
T ss_pred HcCCCEECCcC-------CHHHHHHHHHcCCCEEEECCc-c-------------cCC--HHHHHHHhhhCCCCEE
Confidence 35899999993 256788889999999999983 1 124 4569999999997543
No 155
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=66.38 E-value=1.2e+02 Score=28.61 Aligned_cols=178 Identities=16% Similarity=0.185 Sum_probs=97.5
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTs 226 (428)
.+|.. ++.+ ..++.++.+.++|+..|-+-+-.+. .+.+ ..++ ..+.++.+++..|++.+.+.+ .
T Consensus 11 ~~~~~-~s~e-~~~~i~~~L~~~GV~~IEvg~~~~~-~~~p-----~~~~--~~~~i~~l~~~~~~~~~~~l~---~--- 74 (265)
T cd03174 11 SEGAT-FSTE-DKLEIAEALDEAGVDSIEVGSGASP-KAVP-----QMED--DWEVLRAIRKLVPNVKLQALV---R--- 74 (265)
T ss_pred CCCCC-CCHH-HHHHHHHHHHHcCCCEEEeccCcCc-cccc-----cCCC--HHHHHHHHHhccCCcEEEEEc---c---
Confidence 34443 3775 5889999999999999887442221 1211 1121 356889999988766554332 1
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-------------chHHHHHH---HHHHCCCCCcee
Q 014237 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-------------GRVGAIRA---ALDAEGFQHVSI 290 (428)
Q Consensus 227 hGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD-------------GRV~aIR~---aLD~~Gf~~v~I 290 (428)
+| .+.+-...++|+|.|--++-.. +.+..+.+ .+.+.|+.-..-
T Consensus 75 ---------~~-----------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 134 (265)
T cd03174 75 ---------NR-----------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS 134 (265)
T ss_pred ---------Cc-----------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 11 2223334467888877665443 12222222 234456521111
Q ss_pred echhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCc------hHHHHHHHHhh
Q 014237 291 MSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLP------YLDVIRLLRDK 364 (428)
Q Consensus 291 MSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~------YLDII~~vk~~ 364 (428)
+.++ ++| ..|.++-..-+..=.+.|+|.|.++...- +.++++.+++.
T Consensus 135 ~~~~-------~~~--------------------~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 135 LEDA-------FGC--------------------KTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred EEee-------cCC--------------------CCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHh
Confidence 1111 111 22333332222222467999999987653 36888999999
Q ss_pred CC-CCeEEEEechHH----HHHHHHHHCC
Q 014237 365 YP-LPIAAYQVSGEY----SMIKAGGALK 388 (428)
Q Consensus 365 ~~-lPvaaYqVSGEY----aMIkaAa~~G 388 (428)
++ +|+. +|.---+ +-..+|.++|
T Consensus 188 ~~~~~~~-~H~Hn~~gla~an~laA~~aG 215 (265)
T cd03174 188 LPDVPLG-LHTHNTLGLAVANSLAALEAG 215 (265)
T ss_pred CCCCeEE-EEeCCCCChHHHHHHHHHHcC
Confidence 87 7766 6764443 3344466666
No 156
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=66.33 E-value=75 Score=30.84 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=41.8
Q ss_pred chhcCCceE--EecCCC----chHHHHHHHHhh---CCCCeEEEE-echHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc
Q 014237 338 DESEGADIL--LVKPGL----PYLDVIRLLRDK---YPLPIAAYQ-VSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 407 (428)
Q Consensus 338 Di~EGADil--MVKPal----~YLDII~~vk~~---~~lPvaaYq-VSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAG 407 (428)
=++-|||.| .+|.+. -|+..++++++. +++|+.+-- .-|.. .|..+. ..+.+.......+|
T Consensus 99 al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh--------~~~~~~-~~~~~~~~~a~~~G 169 (258)
T TIGR01949 99 AIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPH--------IDDRDP-ELVAHAARLGAELG 169 (258)
T ss_pred HHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcc--------cccccH-HHHHHHHHHHHHHC
Confidence 356799844 456442 367788888764 579988711 11211 122332 23333334555799
Q ss_pred ccEeehhcHH
Q 014237 408 ADIILTYFAL 417 (428)
Q Consensus 408 Ad~IiTYfA~ 417 (428)
||+|-|.|..
T Consensus 170 ADyikt~~~~ 179 (258)
T TIGR01949 170 ADIVKTPYTG 179 (258)
T ss_pred CCEEeccCCC
Confidence 9999999873
No 157
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=65.93 E-value=1e+02 Score=34.31 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=125.2
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC
Q 014237 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (428)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshG 228 (428)
|..+|+ |+-+.+.++.+.+.|+..|-+|-.+. | -.-+..+|+..|+..- .+.. |+ .||...
T Consensus 90 g~~~yp-ddvv~~~v~~a~~~Gid~~rifd~ln----d---------~~~~~~ai~~ak~~G~--~~~~--~i-~yt~~p 150 (593)
T PRK14040 90 GYRHYA-DDVVERFVERAVKNGMDVFRVFDAMN----D---------PRNLETALKAVRKVGA--HAQG--TL-SYTTSP 150 (593)
T ss_pred ccccCc-HHHHHHHHHHHHhcCCCEEEEeeeCC----c---------HHHHHHHHHHHHHcCC--eEEE--EE-EEeeCC
Confidence 344454 33467788999999999999984221 1 1246678888888653 2222 33 243211
Q ss_pred cceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHH-CCC--CCceeechhhhh
Q 014237 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDA-EGF--QHVSIMSYTAKY 297 (428)
Q Consensus 229 HcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDG--------RV~aIR~aLD~-~Gf--~~v~IMSYsaKy 297 (428)
.+ |++.+.+.+-...++|||+|+-.||.=+ .|.+||+.++- -|| +|+.=|+-+.=.
T Consensus 151 ----------~~---~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~l 217 (593)
T PRK14040 151 ----------VH---TLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLL 217 (593)
T ss_pred ----------cc---CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHH
Confidence 12 4666666666677899999999999753 57788877631 122 455556665544
Q ss_pred ccccccchhhhhcCCCC-CCCccccCCCCCChH-HHHHHHH--hchhcCCceEEecCCCchHHHHHHHHhhC-------C
Q 014237 298 ASSFYGPFREALDSNPR-FGDKKTYQMNPANYR-EALVEAQ--ADESEGADILLVKPGLPYLDVIRLLRDKY-------P 366 (428)
Q Consensus 298 ASafYGPFRdAa~Sap~-fgDRktYQmdpaN~~-EAlrE~~--lDi~EGADilMVKPal~YLDII~~vk~~~-------~ 366 (428)
+..--|- +.++++-. +|-|. +|.. |.+..+. .+.+-|-|+-.+....-|+.=|++.-+.| +
T Consensus 218 aAieAGa--~~vD~ai~glG~~~------Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~~~Y~~~~~~~~~~~ 289 (593)
T PRK14040 218 KAIEAGI--DGVDTAISSMSMTY------GHSATETLVATLEGTERDTGLDILKLEEIAAYFREVRKKYAKFEGQLKGVD 289 (593)
T ss_pred HHHHcCC--CEEEeccccccccc------cchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHHhccCCcccccCc
Confidence 4444441 23444332 45442 3432 2222222 23444555544444444443333222222 1
Q ss_pred CCeEEEEechH--HHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 014237 367 LPIAAYQVSGE--YSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 411 (428)
Q Consensus 367 lPvaaYqVSGE--YaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~I 411 (428)
.=|-.||++|= =.+...+.+.|..|.=.-++|-+...++-.-++|
T Consensus 290 ~~v~~~e~PGG~~Snl~~ql~~~g~~~~~~evl~e~~~v~~~lG~~~ 336 (593)
T PRK14040 290 SRILVAQVPGGMLTNMESQLKEQGAADKLDEVLAEIPRVREDLGFIP 336 (593)
T ss_pred ccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 23678999998 4455568888988755555666555555555554
No 158
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=65.92 E-value=2.2e+02 Score=31.67 Aligned_cols=203 Identities=19% Similarity=0.188 Sum_probs=113.5
Q ss_pred EEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC
Q 014237 133 LFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212 (428)
Q Consensus 133 lFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pd 212 (428)
++|+|-.=+.- ...++..|++.+ +.+..++.+.+.|+.++=+.|- +.-|. +.-|-...+ -..+|.|++..|+
T Consensus 4 v~i~DtTlRDG-~Qs~~atr~~t~-d~l~ia~~l~~~G~~~iE~~gg---atfd~--~~rfl~edp-~e~l~~l~~~~~~ 75 (592)
T PRK09282 4 VKITDTTLRDA-HQSLLATRMRTE-DMLPIAEKLDKVGFWSLEVWGG---ATFDV--CIRYLNEDP-WERLRKLKKALPN 75 (592)
T ss_pred cEEEECCCCcc-ccccCCccCCHH-HHHHHHHHHHHcCCCEEEecCC---ccchh--hcccCCccH-HHHHHHHHHhCCC
Confidence 55665431111 234555688886 5899999999999999988652 11111 011222233 4578999999998
Q ss_pred eEEEeee---cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCC
Q 014237 213 LVIYTDV---ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQ 286 (428)
Q Consensus 213 l~VitDV---cLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM---DGRV~aIR~aLD~~Gf~ 286 (428)
..+.+=. .+.-|+. --|..++..++.|. ++|.|++--.|-+ +....+|+.+- ++|+.
T Consensus 76 ~~l~~l~Rg~N~~gy~~-------------ypd~vv~~~v~~A~---~~Gvd~irif~~lnd~~n~~~~i~~ak-~~G~~ 138 (592)
T PRK09282 76 TPLQMLLRGQNLVGYRH-------------YPDDVVEKFVEKAA---ENGIDIFRIFDALNDVRNMEVAIKAAK-KAGAH 138 (592)
T ss_pred CEEEEEecccccccccc-------------ccchhhHHHHHHHH---HCCCCEEEEEEecChHHHHHHHHHHHH-HcCCE
Confidence 6654321 1222211 12444555566654 6699976443332 34455555444 56774
Q ss_pred CceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCc------hHHHHHH
Q 014237 287 HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLP------YLDVIRL 360 (428)
Q Consensus 287 ~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~------YLDII~~ 360 (428)
-..-++|+. +|+ .++...-+-.+++ .+-|||.|-+|=-.- .-++++.
T Consensus 139 v~~~i~~t~-------~p~-----------------~t~~~~~~~a~~l---~~~Gad~I~i~Dt~G~~~P~~~~~lv~~ 191 (592)
T PRK09282 139 VQGTISYTT-------SPV-----------------HTIEKYVELAKEL---EEMGCDSICIKDMAGLLTPYAAYELVKA 191 (592)
T ss_pred EEEEEEecc-------CCC-----------------CCHHHHHHHHHHH---HHcCCCEEEECCcCCCcCHHHHHHHHHH
Confidence 445567753 221 1222222323333 345999998874322 3589999
Q ss_pred HHhhCCCCeEEEEech----HHHHHHHHHHCC
Q 014237 361 LRDKYPLPIAAYQVSG----EYSMIKAGGALK 388 (428)
Q Consensus 361 vk~~~~lPvaaYqVSG----EYaMIkaAa~~G 388 (428)
+|+++++|+. +|--- -.+-..+|.++|
T Consensus 192 lk~~~~~pi~-~H~Hnt~Gla~An~laAv~aG 222 (592)
T PRK09282 192 LKEEVDLPVQ-LHSHCTSGLAPMTYLKAVEAG 222 (592)
T ss_pred HHHhCCCeEE-EEEcCCCCcHHHHHHHHHHhC
Confidence 9999998874 45432 234445567777
No 159
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=65.74 E-value=16 Score=42.49 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014237 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (428)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~ 236 (428)
.-+.+.|+++.+.||.-+-+|-.+ |-=.=+..||.+++++- =++.+|+| ||.+ |++.
T Consensus 630 nVi~~Fvkqaa~~GIDvFRiFDsL-------------Nwv~~M~vaidAV~e~g----kv~EatiC-YTGD----ildp- 686 (1149)
T COG1038 630 NVIREFVKQAAKSGIDVFRIFDSL-------------NWVEQMRVAIDAVREAG----KVAEATIC-YTGD----ILDP- 686 (1149)
T ss_pred HHHHHHHHHHHhcCccEEEeehhh-------------cchhhhhhHHHHHHhcC----CeEEEEEE-eccc----cCCC-
Confidence 346788999999999977777532 11122456888888764 56788887 6543 4432
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHHC------CCCCceeechhhh
Q 014237 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDAE------GFQHVSIMSYTAK 296 (428)
Q Consensus 237 g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~~------Gf~~v~IMSYsaK 296 (428)
++- -=||+.+.+.|-..-++||||+|--||-- ==|+++|+..|-- .=+-.+|-+|++-
T Consensus 687 ~r~--kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHlHTHDTsG~~~at~~aA 758 (1149)
T COG1038 687 GRK--KYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVDLPIHLHTHDTSGNGVATYLAA 758 (1149)
T ss_pred Ccc--cccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhcCCceEEeccCCCccHHHHHHHH
Confidence 211 11899999999999999999999999853 2367777765421 1122456666553
No 160
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=65.65 E-value=13 Score=38.24 Aligned_cols=136 Identities=24% Similarity=0.317 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchh-------hhhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR-------EALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFR-------dAa~Sap~- 314 (428)
-|.+.+++++-.++..|.|+|= |.+++.|- =|-||+ +|++.+-.
T Consensus 27 lsp~~~a~~~y~~a~GG~D~IK----------------DDE~l~~q------------~f~p~~eRv~~~~~a~~~a~~e 78 (309)
T PF00016_consen 27 LSPEELAELAYEFALGGVDFIK----------------DDENLANQ------------PFCPFEERVPACMEAVDRAEEE 78 (309)
T ss_dssp S-HHHHHHHHHHHHHTTSSEEE----------------E-TT-SSB------------TTBEHHHHHHHHHHHHHHHHHH
T ss_pred ecccchhhHHHhhhhcccceec----------------ccccccCc------------ccccHhHhHHhhhhhhhccccc
Confidence 4788999999999999999984 33443221 123443 12221111
Q ss_pred CCCccccCCCCC--ChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh---hCCCCeEEEEechHHHHHHHHHHCCC
Q 014237 315 FGDKKTYQMNPA--NYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAYQVSGEYSMIKAGGALKM 389 (428)
Q Consensus 315 fgDRktYQmdpa--N~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~---~~~lPvaaYqVSGEYaMIkaAa~~G~ 389 (428)
-|-|+-|-.+-- ...|-++.++.=++.|++.|||=+...=++.++.+.+ ...+|+. +|-.|-=++.. .-..|+
T Consensus 79 TG~~~ly~~NiT~~~~~em~~ra~~a~~~G~~~vmv~~~~~G~~~~~~l~~~~~~~~~~ih-~H~A~~ga~~r-~~~~Gi 156 (309)
T PF00016_consen 79 TGEKKLYAANITADTPDEMIERAEYAKEAGANAVMVNVLTAGFSALQSLAEDARDNGLPIH-AHRAGHGAFTR-SPDHGI 156 (309)
T ss_dssp HSS--EEEEEE-SSSHHHHHHHHHHHHHHTGSEEEEEHHHHCHHHHHHHHHHHHHHTSEEE-EETTTHHHHHS-SSSSEE
T ss_pred cceecceecccccccHHHHHHhhhhhhhhccchhhcccccccccccchhhhhhcccceeee-eccccchhhcc-cccCcc
Confidence 266788888863 3589999999999999999999765443666665543 3346654 35443222222 122454
Q ss_pred CchhhHHHHHHHHHHHhcccEeeh
Q 014237 390 IDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+. .++=. -+|=||||.|++
T Consensus 157 -s~--~vl~k--l~RLaGaD~vh~ 175 (309)
T PF00016_consen 157 -SF--RVLGK--LMRLAGADHVHF 175 (309)
T ss_dssp -HH--HHHHH--HHHHHT-SEEEE
T ss_pred -ce--eeecc--ceecceeeeecc
Confidence 32 33433 346699999983
No 161
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=65.60 E-value=26 Score=31.96 Aligned_cols=62 Identities=35% Similarity=0.470 Sum_probs=42.9
Q ss_pred ChHHHHHHHHhchhcCCceEEecCC--------Cc--hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHH
Q 014237 327 NYREALVEAQADESEGADILLVKPG--------LP--YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVM 396 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVKPa--------l~--YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~v 396 (428)
|.+| ++++. +.|+|.+.+=|- .+ =+|-++++++.+++||.| -|-|+.+++
T Consensus 104 ~~~e-~~~a~---~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~A---------------lGGI~~~~i- 163 (180)
T PF02581_consen 104 SLEE-AREAE---ELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYA---------------LGGITPENI- 163 (180)
T ss_dssp SHHH-HHHHH---HCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEE---------------ESS--TTTH-
T ss_pred cHHH-HHHhh---hcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEE---------------EcCCCHHHH-
Confidence 5555 33333 799999998654 22 289999999999999988 477787653
Q ss_pred HHHHHHHHHhcccEee
Q 014237 397 MESLMCLRRAGADIIL 412 (428)
Q Consensus 397 lEsL~~~kRAGAd~Ii 412 (428)
..++++||+.|-
T Consensus 164 ----~~l~~~Ga~gvA 175 (180)
T PF02581_consen 164 ----PELREAGADGVA 175 (180)
T ss_dssp ----HHHHHTT-SEEE
T ss_pred ----HHHHHcCCCEEE
Confidence 467789999874
No 162
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.27 E-value=14 Score=37.20 Aligned_cols=70 Identities=21% Similarity=0.190 Sum_probs=48.0
Q ss_pred cCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCCchhhHHHH
Q 014237 321 YQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMME 398 (428)
Q Consensus 321 YQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~--~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlE 398 (428)
-..-..|.+|+...+ +.|||+||. .. .=++-++++.+.. ++|+.| .|-|++ |
T Consensus 192 I~VEv~tleea~eA~----~~gaD~I~L-D~-~~~e~l~~~v~~~~~~i~leA---------------sGGIt~-----~ 245 (277)
T PRK05742 192 VEVEVESLDELRQAL----AAGADIVML-DE-LSLDDMREAVRLTAGRAKLEA---------------SGGINE-----S 245 (277)
T ss_pred EEEEeCCHHHHHHHH----HcCCCEEEE-CC-CCHHHHHHHHHHhCCCCcEEE---------------ECCCCH-----H
Confidence 566667877765543 789999999 33 3556677666655 577665 456664 4
Q ss_pred HHHHHHHhcccEeehhcH
Q 014237 399 SLMCLRRAGADIILTYFA 416 (428)
Q Consensus 399 sL~~~kRAGAd~IiTYfA 416 (428)
.+..+..+|+|.|-|-.-
T Consensus 246 ni~~~a~tGvD~Isvg~l 263 (277)
T PRK05742 246 TLRVIAETGVDYISIGAM 263 (277)
T ss_pred HHHHHHHcCCCEEEEChh
Confidence 556788899999976543
No 163
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.07 E-value=21 Score=34.39 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=48.1
Q ss_pred HHHHHHHHhhCCCCeE--EEE---echHHHHHHHHHHCCC---------CchhhHHHHHHHHHHHhcccEeehhc
Q 014237 355 LDVIRLLRDKYPLPIA--AYQ---VSGEYSMIKAGGALKM---------IDEQRVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 355 LDII~~vk~~~~lPva--aYq---VSGEYaMIkaAa~~G~---------iD~~~~vlEsL~~~kRAGAd~IiTYf 415 (428)
+++++.+|+.+++|+. +|- ++|....++.+.+.|+ ++-.+-..|.+..+++.|.+.|+.--
T Consensus 63 ~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~ 137 (244)
T PRK13125 63 WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTS 137 (244)
T ss_pred HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEEC
Confidence 9999999988899984 332 8999999999999997 22123457888899999999987543
No 164
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=65.06 E-value=1.1e+02 Score=31.07 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcC---cCCCCCHHHHHHHHHHH--CCCeEEEeeecccCCCCCCccee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA---YNDNGLVPRTIWLLKDR--YPDLVIYTDVALDPYSSDGHDGI 232 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A---~~~~g~v~rAIr~iK~~--~Pdl~VitDVcLc~YTshGHcGi 232 (428)
.+.+.|+++.+.|+-.|.|==.+.+ +| +|... .-+-.-..+=|++.++. -+|++||+=+. .|..+
T Consensus 94 ~v~r~V~~~~~aGaagi~IEDq~~p-K~--cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD--a~~~~----- 163 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHIEDQVGA-KR--CGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTD--ALAVE----- 163 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCc-cc--cCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecC--ccccc-----
Confidence 4788899999999999887111111 11 23211 11222234455655554 36888886332 22222
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHH
Q 014237 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281 (428)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD 281 (428)
| =|+++++ |..|++||||+|-+-.+-| ...||+.-.
T Consensus 164 ----g---~deAI~R----a~aY~eAGAD~ifi~~~~~--~~~i~~~~~ 199 (292)
T PRK11320 164 ----G---LDAAIER----AQAYVEAGADMIFPEAMTE--LEMYRRFAD 199 (292)
T ss_pred ----C---HHHHHHH----HHHHHHcCCCEEEecCCCC--HHHHHHHHH
Confidence 2 2555555 8899999999998876554 555555443
No 165
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=64.85 E-value=1.1e+02 Score=28.68 Aligned_cols=100 Identities=21% Similarity=0.361 Sum_probs=56.3
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--chHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCC
Q 014237 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (428)
Q Consensus 236 ~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD--GRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap 313 (428)
.|-+.+.+++..+ |..+.++|+..+. |+ .-+..||+. .+++|+. +||.-.+.
T Consensus 20 ~~~~~~~~~i~~~---a~~~~~~G~~~~~----~~~~~~~~~i~~~------~~iPil~-----------~~~~~~~~-- 73 (219)
T cd04729 20 GEPLHSPEIMAAM---ALAAVQGGAVGIR----ANGVEDIRAIRAR------VDLPIIG-----------LIKRDYPD-- 73 (219)
T ss_pred CCCcCcHHHHHHH---HHHHHHCCCeEEE----cCCHHHHHHHHHh------CCCCEEE-----------EEecCCCC--
Confidence 4666666665554 5556789998875 21 234444432 4777765 44322110
Q ss_pred CCCCccccCCCCCChHHHHHHHHhchhcCCceEEec------CC-CchHHHHHHHHhhCCCCeEE
Q 014237 314 RFGDKKTYQMNPANYREALVEAQADESEGADILLVK------PG-LPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 314 ~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK------Pa-l~YLDII~~vk~~~~lPvaa 371 (428)
...-+++ +. + +++.=.+.|||+|.+- |. ..-.++++.+++..++|+.+
T Consensus 74 -----~~~~ig~-~~-~---~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv 128 (219)
T cd04729 74 -----SEVYITP-TI-E---EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA 128 (219)
T ss_pred -----CCceeCC-CH-H---HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE
Confidence 0011222 11 1 2233357899998883 43 35678999999887788765
No 166
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=64.76 E-value=84 Score=30.44 Aligned_cols=130 Identities=21% Similarity=0.295 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCcc
Q 014237 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (428)
Q Consensus 240 dND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRk 319 (428)
..++.++.|+++|..| .-.+=+|.|+ .|...|+.|...+..=..+.+| || |.
T Consensus 15 ~t~~~i~~lc~~A~~~-~~~avcv~p~-----~v~~a~~~l~~~~v~v~tVigF----------P~----------G~-- 66 (211)
T TIGR00126 15 TTEEDIITLCAQAKTY-KFAAVCVNPS-----YVPLAKELLKGTEVRICTVVGF----------PL----------GA-- 66 (211)
T ss_pred CCHHHHHHHHHHHHhh-CCcEEEeCHH-----HHHHHHHHcCCCCCeEEEEeCC----------CC----------CC--
Confidence 5788889999999877 2333344443 5666666664222111111111 21 31
Q ss_pred ccCCCCCChHHHHHHHHhchhcCCceEEecCCCc------h---HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCC
Q 014237 320 TYQMNPANYREALVEAQADESEGADILLVKPGLP------Y---LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 389 (428)
Q Consensus 320 tYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~------Y---LDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~ 389 (428)
....--+.|++.=++.|||-|-+=+-.. | .+=|+++++.. ++|+-+ + .+.|.
T Consensus 67 ------~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKv--I----------lE~~~ 128 (211)
T TIGR00126 67 ------STTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKV--I----------IETGL 128 (211)
T ss_pred ------CcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEE--E----------EecCC
Confidence 1233335666666778998775544332 2 33455566655 567655 2 45666
Q ss_pred CchhhHHHHHHHHHHHhcccEeehh--cH
Q 014237 390 IDEQRVMMESLMCLRRAGADIILTY--FA 416 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~IiTY--fA 416 (428)
++.++.. ..-.....+|||+|=|. |.
T Consensus 129 L~~~ei~-~a~~ia~eaGADfvKTsTGf~ 156 (211)
T TIGR00126 129 LTDEEIR-KACEICIDAGADFVKTSTGFG 156 (211)
T ss_pred CCHHHHH-HHHHHHHHhCCCEEEeCCCCC
Confidence 7665443 56666788999999998 87
No 167
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=64.71 E-value=43 Score=32.72 Aligned_cols=91 Identities=27% Similarity=0.352 Sum_probs=58.9
Q ss_pred CCChHHHHHHHHhchhcCCceEEecCCCc--------hHHHHHHHHhhC-CCCeEE----------EEec-hHH-HHHHH
Q 014237 325 PANYREALVEAQADESEGADILLVKPGLP--------YLDVIRLLRDKY-PLPIAA----------YQVS-GEY-SMIKA 383 (428)
Q Consensus 325 paN~~EAlrE~~lDi~EGADilMVKPal~--------YLDII~~vk~~~-~lPvaa----------YqVS-GEY-aMIka 383 (428)
..+.+|.++++..=..+|||+|=..-.+. -+++++.+++.+ ++|+.. |..| .|| ..++.
T Consensus 24 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 103 (253)
T PRK02412 24 GKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALIKA 103 (253)
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHHHH
Confidence 34677877777655568999997665522 124566777776 589665 2233 234 46677
Q ss_pred HHHCC---CCchh-----hHHHHHHHHHHHhcccEeehhc
Q 014237 384 GGALK---MIDEQ-----RVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 384 Aa~~G---~iD~~-----~~vlEsL~~~kRAGAd~IiTYf 415 (428)
+...| |+|-+ +.+-+.+...++.|..+|++|+
T Consensus 104 ~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H 143 (253)
T PRK02412 104 VIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYH 143 (253)
T ss_pred HHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeC
Confidence 88776 44543 3444555666788999999998
No 168
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=64.61 E-value=43 Score=31.02 Aligned_cols=78 Identities=29% Similarity=0.396 Sum_probs=52.9
Q ss_pred ccCCCCCChHHHHHHHHhchhc-CCceEEecCCCc-------------------hHHHHHHHHhhCCCCeEEEEechHHH
Q 014237 320 TYQMNPANYREALVEAQADESE-GADILLVKPGLP-------------------YLDVIRLLRDKYPLPIAAYQVSGEYS 379 (428)
Q Consensus 320 tYQmdpaN~~EAlrE~~lDi~E-GADilMVKPal~-------------------YLDII~~vk~~~~lPvaaYqVSGEYa 379 (428)
..|+-- |.-|.+.++..-+.+ |+|.|=++=+-| -.+||+.+++...+|+.+-- +
T Consensus 58 ~~qi~g-~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~-r---- 131 (231)
T cd02801 58 IVQLGG-SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKI-R---- 131 (231)
T ss_pred EEEEcC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEE-e----
Confidence 455553 334455666666777 999998874443 36999999998888887632 1
Q ss_pred HHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 014237 380 MIKAGGALKMIDEQRVMMESLMCLRRAGADII 411 (428)
Q Consensus 380 MIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~I 411 (428)
.||-++ .-..|.+..+..+|+|.|
T Consensus 132 -------~~~~~~-~~~~~~~~~l~~~Gvd~i 155 (231)
T cd02801 132 -------LGWDDE-EETLELAKALEDAGASAL 155 (231)
T ss_pred -------eccCCc-hHHHHHHHHHHHhCCCEE
Confidence 355443 345677777788899888
No 169
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=64.36 E-value=7.8 Score=35.71 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCeEEEe---eec-ccCCCCCCcceeecCCCccccHHH
Q 014237 201 RTIWLLKDRYPDLVIYT---DVA-LDPYSSDGHDGIVREDGVIMNDET 244 (428)
Q Consensus 201 rAIr~iK~~~Pdl~Vit---DVc-Lc~YTshGHcGil~~~g~IdND~T 244 (428)
+-++-|| ++|++.|+. |+| =|||-+|+||| + ++.+++|.+
T Consensus 31 ~I~~rL~-~ge~i~lV~g~DDIC~~cp~~~~~~C~--~-e~~~~r~r~ 74 (135)
T COG3543 31 AIAERLK-AGEDIKLVDGPDDICVSCPCKIDNHCG--D-ESSVERDRI 74 (135)
T ss_pred HHHHHhh-cCCCeEEEecccchhhcCcCCCCCccc--c-chhHHHHHH
Confidence 3444454 479977765 888 79999999999 3 356666653
No 170
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=64.10 E-value=1.1e+02 Score=27.61 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCC-CHHHHHHHHHHHC
Q 014237 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG-LVPRTIWLLKDRY 210 (428)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g-~v~rAIr~iK~~~ 210 (428)
|+++-..+. .+.+.++.+.+.|++.|-| +. ||.. +.++- +-...++.|++.+
T Consensus 4 ~~~~~~d~~-~~~~~~~~~~~~G~~~i~l-~~-----~d~~----~~~~~~~~~~~~~~i~~~~ 56 (211)
T cd00429 4 PSILSADFA-NLGEELKRLEEAGADWIHI-DV-----MDGH----FVPNLTFGPPVVKALRKHT 56 (211)
T ss_pred eeeecCCHH-HHHHHHHHHHHcCCCEEEE-ec-----ccCC----CCCccccCHHHHHHHHhhC
Confidence 455555554 4889999999999987665 42 3321 11111 2246788888765
No 171
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=63.84 E-value=8.6 Score=40.38 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-HHHHHHHHHCCCeEEEe--------eecccCCCCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-RTIWLLKDRYPDLVIYT--------DVALDPYSSDG 228 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~-rAIr~iK~~~Pdl~Vit--------DVcLc~YTshG 228 (428)
.-+++++.+.+.|.+-+.+.|... ..|+. .-|++. .+|++||+.+|++-||+ |++.|-= -+|
T Consensus 156 kTvd~ak~~e~aG~~~ltVHGRtr-~~kg~-------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~-~tG 226 (358)
T KOG2335|consen 156 KTVDYAKMLEDAGVSLLTVHGRTR-EQKGL-------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLK-YTG 226 (358)
T ss_pred HHHHHHHHHHhCCCcEEEEecccH-HhcCC-------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHH-HhC
Confidence 478888899999999999999854 34433 223443 79999999999987776 7776632 368
Q ss_pred cceeecCCCccccHH
Q 014237 229 HDGIVREDGVIMNDE 243 (428)
Q Consensus 229 HcGil~~~g~IdND~ 243 (428)
=+||+...|-+.|-.
T Consensus 227 ~dGVM~arglL~NPa 241 (358)
T KOG2335|consen 227 ADGVMSARGLLYNPA 241 (358)
T ss_pred CceEEecchhhcCch
Confidence 899997678777754
No 172
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=63.18 E-value=20 Score=37.42 Aligned_cols=148 Identities=17% Similarity=0.192 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCce-----eechhhhhccccccchhhhhcCCCCCCC--ccccCC
Q 014237 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS-----IMSYTAKYASSFYGPFREALDSNPRFGD--KKTYQM 323 (428)
Q Consensus 251 ~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~-----IMSYsaKyASafYGPFRdAa~Sap~fgD--RktYQm 323 (428)
.|....+||+|+|.=.|-. ..-..||.++- -|-|-+| --+.++..+-.-+| --|||-
T Consensus 47 sA~i~d~aGvD~ILVGDSl---------gmv~lG~~~T~~Vtld~mi~H~~-------aV~Rga~~a~vVaDmPfgSY~~ 110 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDSA---------AMVVHGHDTTLPITLDEMLVHCR-------AVARGANRPLLVGDLPFGSYES 110 (332)
T ss_pred HHHHHHHcCCCEEEECCcH---------HHHhcCCCCCCCcCHHHHHHHHH-------HHhccCCCCEEEeCCCCCCCCC
Confidence 3445567899999877753 22345665542 1333332 01122222111112 126765
Q ss_pred CCCChHHHHHHHHhchh-cCCceEEecCC-CchHHHHHHHHhhCCCCeEE--------EEechHHHHHHHHHHCCCC-ch
Q 014237 324 NPANYREALVEAQADES-EGADILLVKPG-LPYLDVIRLLRDKYPLPIAA--------YQVSGEYSMIKAGGALKMI-DE 392 (428)
Q Consensus 324 dpaN~~EAlrE~~lDi~-EGADilMVKPa-l~YLDII~~vk~~~~lPvaa--------YqVSGEYaMIkaAa~~G~i-D~ 392 (428)
+.++|++-+.+=+. -|||.|=+.-+ -..+++|+.+. .-.+||++ .+.-|-|.. .|-- ++
T Consensus 111 ---s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykv------qGr~~~~ 180 (332)
T PLN02424 111 ---STDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRP------QGRTAES 180 (332)
T ss_pred ---CHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccc------cCCCHHH
Confidence 44788888777654 68999888887 45789999998 67899982 223344432 1211 23
Q ss_pred hhHHHHHHHHHHHhcccEeehhcHH-HHHHHHh
Q 014237 393 QRVMMESLMCLRRAGADIILTYFAL-QAARCLC 424 (428)
Q Consensus 393 ~~~vlEsL~~~kRAGAd~IiTYfA~-e~a~wL~ 424 (428)
-+-++|-..++..|||+.|+-=.-+ ++|+++.
T Consensus 181 a~~li~dA~ale~AGAf~ivLE~Vp~~la~~It 213 (332)
T PLN02424 181 AVKVVETALALQEAGCFAVVLECVPAPVAAAIT 213 (332)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHH
Confidence 4578899999999999998754433 3555554
No 173
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=62.88 E-value=30 Score=33.11 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=40.3
Q ss_pred ccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014237 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (428)
Q Consensus 188 ~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD 267 (428)
.|.+-+-..| .+.|+.||+.||+..|++|.-+. |.+.|+... .+++|||++.-..
T Consensus 34 vG~~l~~~~G--~~~i~~lk~~~~~~~v~~DLK~~-----------------Di~~~v~~~------~~~~Gad~vTvH~ 88 (216)
T PRK13306 34 VGTILLLAEG--MKAVRVLRALYPDKIIVADTKIA-----------------DAGKILAKM------AFEAGADWVTVIC 88 (216)
T ss_pred EChHHHHHhC--HHHHHHHHHHCCCCEEEEEEeec-----------------CCcHHHHHH------HHHCCCCEEEEeC
Confidence 4666666667 47899999999999999998873 233454433 5688999887665
No 174
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=62.79 E-value=17 Score=36.25 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=72.6
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccchh
Q 014237 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (428)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFR 306 (428)
+||.|| -+.++.+++ -+.++|+|-|.+.+.. +=|...++...+..+ .+++||.-.
T Consensus 21 ~dg~iD-~~~l~~li~---~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv------------ 83 (303)
T PRK03620 21 ADGSFD-EAAYREHLE---WLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA-GRVPVIAGA------------ 83 (303)
T ss_pred CCCCcC-HHHHHHHHH---HHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEec------------
Confidence 567776 334555554 4556899998876642 346777777777654 467776421
Q ss_pred hhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEech---
Q 014237 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG--- 376 (428)
Q Consensus 307 dAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG--- 376 (428)
.. |.+|+++.+..=.+-|||.+|+=|-..| .+-.+.+.+.+++||..||-+|
T Consensus 84 -----------------~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l 145 (303)
T PRK03620 84 -----------------GG-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVL 145 (303)
T ss_pred -----------------CC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Confidence 11 4555566555555679999999775322 3445567788889999999777
Q ss_pred HHHHHHHHH
Q 014237 377 EYSMIKAGG 385 (428)
Q Consensus 377 EYaMIkaAa 385 (428)
....++.-+
T Consensus 146 ~~~~l~~L~ 154 (303)
T PRK03620 146 TADTLARLA 154 (303)
T ss_pred CHHHHHHHH
Confidence 334444433
No 175
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=62.68 E-value=20 Score=35.66 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=42.0
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014237 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (428)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vi 216 (428)
..|+++.+ +++++++++.+.|++.|.|-|-..+. . +...+...++.||+.+|++-+.
T Consensus 32 ~~~~ls~e-eI~~~~~~~~~~G~~~i~l~gg~~~~-~---------~~~~~~~i~~~Ik~~~~~i~~~ 88 (309)
T TIGR00423 32 DAYVLSLE-EILEKVKEAVAKGATEVCIQGGLNPQ-L---------DIEYYEELFRAIKQEFPDVHIH 88 (309)
T ss_pred CcccCCHH-HHHHHHHHHHHCCCCEEEEecCCCCC-C---------CHHHHHHHHHHHHHHCCCceEE
Confidence 35788996 69999999999999999986421111 1 1134778999999999876643
No 176
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=62.68 E-value=14 Score=38.12 Aligned_cols=161 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHH----CCCCCceeechhhhhcc--------c
Q 014237 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA----EGFQHVSIMSYTAKYAS--------S 300 (428)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~----~Gf~~v~IMSYsaKyAS--------a 300 (428)
+..+.++.|.--=+.+.++=-+|.+||||||-..-----+|.-=+--|+. -++.-+.|===+|+-+| .
T Consensus 40 ~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaG 119 (311)
T COG0646 40 LKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAG 119 (311)
T ss_pred ccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEE
Q ss_pred cccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchh-cCCceEEecCCCchHHHHH------HHHhhCC-----CC
Q 014237 301 FYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADES-EGADILLVKPGLPYLDVIR------LLRDKYP-----LP 368 (428)
Q Consensus 301 fYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~-EGADilMVKPal~YLDII~------~vk~~~~-----lP 368 (428)
=-||.+..+..+| | |-+......||.+|...=+- +|||++++. .|-|++. .+++.|. ||
T Consensus 120 siGPt~k~~~~~~---~---~~v~fd~l~~ay~eq~~~Li~gG~D~iLiE---T~~D~l~~KaA~~a~~~~~~~~~~~LP 190 (311)
T COG0646 120 SIGPTNKTLSISP---D---FAVTFDELVEAYREQVEGLIDGGADLILIE---TIFDTLNAKAAVFAAREVFEELGVRLP 190 (311)
T ss_pred eccCcCCcCCcCC---c---ccccHHHHHHHHHHHHHHHHhCCCcEEEEe---hhccHHHHHHHHHHHHHHHHhcCCccc
Q ss_pred eEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 014237 369 IAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 411 (428)
Q Consensus 369 vaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~I 411 (428)
+.+=.- ....|-.=.-+.+-+.+.+++.+|+|++
T Consensus 191 v~~s~T---------i~~sG~tl~Gq~~~a~~~~l~~~~~~~v 224 (311)
T COG0646 191 VMISGT---------ITDSGRTLSGQTIEAFLNSLEHLGPDAV 224 (311)
T ss_pred EEEEEE---------EecCceecCCCcHHHHHHHhhccCCcEE
No 177
>PRK07695 transcriptional regulator TenI; Provisional
Probab=62.59 E-value=32 Score=31.85 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=39.5
Q ss_pred hcCCceEEec--------CC--CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhccc
Q 014237 340 SEGADILLVK--------PG--LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 409 (428)
Q Consensus 340 ~EGADilMVK--------Pa--l~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd 409 (428)
+.|||+|+.= |+ ...++.++++++.+++|+.| .|-|+. |.+..+..+|||
T Consensus 113 ~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia---------------~GGI~~-----~~~~~~~~~Ga~ 172 (201)
T PRK07695 113 KNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIA---------------IGGITP-----ENTRDVLAAGVS 172 (201)
T ss_pred HcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------EcCCCH-----HHHHHHHHcCCC
Confidence 5799999752 22 23578999999999999986 455665 345556679999
Q ss_pred Ee--ehhc
Q 014237 410 II--LTYF 415 (428)
Q Consensus 410 ~I--iTYf 415 (428)
.| .+.+
T Consensus 173 gvav~s~i 180 (201)
T PRK07695 173 GIAVMSGI 180 (201)
T ss_pred EEEEEHHH
Confidence 76 4444
No 178
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.52 E-value=2e+02 Score=29.96 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=24.2
Q ss_pred hcCCceEEecCC--------CchHHHHHHHHhhCCCCeEE
Q 014237 340 SEGADILLVKPG--------LPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 340 ~EGADilMVKPa--------l~YLDII~~vk~~~~lPvaa 371 (428)
+.|.|+|=|-=+ ...+++.+.+|+.+++||.+
T Consensus 246 ~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~ 285 (361)
T cd04747 246 DAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTIT 285 (361)
T ss_pred HcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEE
Confidence 469999977322 12578999999999999885
No 179
>PRK12928 lipoyl synthase; Provisional
Probab=62.22 E-value=54 Score=32.98 Aligned_cols=139 Identities=21% Similarity=0.216 Sum_probs=82.6
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHc 230 (428)
+.++.+ ++++.++++.++|++-|.|=|..-++..| + ...-+...|+.||+.+|++-| ++ |.|. +.
T Consensus 85 ~~~~~e-ei~~~a~~~~~~G~keivitg~~~dDl~d--~-----g~~~~~ell~~Ik~~~p~~~I--~~-ltp~----~~ 149 (290)
T PRK12928 85 MPLDPD-EPERVAEAVAALGLRYVVLTSVARDDLPD--G-----GAAHFVATIAAIRARNPGTGI--EV-LTPD----FW 149 (290)
T ss_pred CCCCHH-HHHHHHHHHHHCCCCEEEEEEEeCCcccc--c-----CHHHHHHHHHHHHhcCCCCEE--EE-eccc----cc
Confidence 557776 69999999999999998887751111111 0 001377899999999998755 22 2221 11
Q ss_pred e----ee---cCCC-cccc------HHH---------HHHHHHHHHHHHHcCCCeecCCCCCCch------HHHHHHHHH
Q 014237 231 G----IV---REDG-VIMN------DET---------VHQLCKQAVSQARAGADVVSPSDMMDGR------VGAIRAALD 281 (428)
Q Consensus 231 G----il---~~~g-~IdN------D~T---------l~~Lak~Als~A~AGADiVAPSDMMDGR------V~aIR~aLD 281 (428)
| .+ .+.| +|-| |.- .+...+.--...+.|-++..-|+||=|- +...=+.|.
T Consensus 150 ~~~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lr 229 (290)
T PRK12928 150 GGQRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLR 229 (290)
T ss_pred cCCHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHH
Confidence 1 00 0111 1222 222 2222222233445788899999999885 223334567
Q ss_pred HCCCCCceeechhh--h---hccccccc
Q 014237 282 AEGFQHVSIMSYTA--K---YASSFYGP 304 (428)
Q Consensus 282 ~~Gf~~v~IMSYsa--K---yASafYGP 304 (428)
+.|+..+.|..|.- | .-..|+-|
T Consensus 230 el~~d~v~i~~Yl~p~~~~~~v~~~~~~ 257 (290)
T PRK12928 230 AVGCDRLTIGQYLRPSLAHLPVQRYWTP 257 (290)
T ss_pred hcCCCEEEEEcCCCCCccCCceeeccCH
Confidence 78999999999976 3 23456655
No 180
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=62.15 E-value=1.2e+02 Score=30.62 Aligned_cols=117 Identities=14% Similarity=0.213 Sum_probs=66.6
Q ss_pred eeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCccc-----CcCcCCCCCHHHHHH-
Q 014237 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTG-----DEAYNDNGLVPRTIW- 204 (428)
Q Consensus 131 ~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~G-----s~A~~~~g~v~rAIr- 204 (428)
.||+|....+ ++ ++.+.++.+.+.|+..|.+++.+.....|... ...+.-..+.+.+++
T Consensus 166 iPV~vKl~p~--------------~~-~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~ 230 (334)
T PRK07565 166 IPVAVKLSPY--------------FS-NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRW 230 (334)
T ss_pred CcEEEEeCCC--------------ch-hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHH
Confidence 5999996432 12 36677788889999999999875432233211 111222233444444
Q ss_pred --HHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCc------hHH
Q 014237 205 --LLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDG------RVG 274 (428)
Q Consensus 205 --~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPS--DMMDG------RV~ 274 (428)
.+++.. ++-||+ .|-|.|= +.|+.+-.+|||.|.=. =|.+| -+.
T Consensus 231 v~~~~~~~-~ipIig------------------~GGI~s~-------~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~ 284 (334)
T PRK07565 231 IAILSGRV-GADLAA------------------TTGVHDA-------EDVIKMLLAGADVVMIASALLRHGPDYIGTILR 284 (334)
T ss_pred HHHHHhhc-CCCEEE------------------ECCCCCH-------HHHHHHHHcCCCceeeehHHhhhCcHHHHHHHH
Confidence 444433 232331 2444442 34455556899987543 34444 445
Q ss_pred HHHHHHHHCCCCCc
Q 014237 275 AIRAALDAEGFQHV 288 (428)
Q Consensus 275 aIR~aLD~~Gf~~v 288 (428)
.|++.|+..||.++
T Consensus 285 ~L~~~l~~~g~~~i 298 (334)
T PRK07565 285 GLEDWMERHGYESL 298 (334)
T ss_pred HHHHHHHHcCCCCH
Confidence 67788889999764
No 181
>PRK09234 fbiC FO synthase; Reviewed
Probab=62.07 E-value=36 Score=39.29 Aligned_cols=85 Identities=24% Similarity=0.373 Sum_probs=58.6
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCc-eEEecCCC-------chHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHC
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGAD-ILLVKPGL-------PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGAL 387 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGAD-ilMVKPal-------~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~ 387 (428)
+-..|.|++ +|.+.++..-.+.|+. +.|| -|. .|+|+++.+|+++ ++.+-||.=. -....|...
T Consensus 551 ~~~~y~Ls~---eeI~~~a~ea~~~G~tev~i~-gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~---Ei~~~a~~~ 623 (843)
T PRK09234 551 DADAYTLSL---DEVADRAWEAWVAGATEVCMQ-GGIHPELPGTGYADLVRAVKARVPSMHVHAFSPM---EIVNGAARL 623 (843)
T ss_pred CCCcccCCH---HHHHHHHHHHHHCCCCEEEEe-cCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChH---HHHHHHHHc
Confidence 445888855 5555555555567776 4555 333 5899999999998 4888777421 223456777
Q ss_pred CCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 388 KMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 388 G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
|+..+ |.|..+|.||.|.+--
T Consensus 624 Gl~~~-----e~l~~LkeAGLds~pg 644 (843)
T PRK09234 624 GLSIR-----EWLTALREAGLDTIPG 644 (843)
T ss_pred CCCHH-----HHHHHHHHhCcCccCC
Confidence 87544 8899999999998754
No 182
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=61.74 E-value=46 Score=33.20 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=55.6
Q ss_pred cccCCCCCChHHHHHHHHhchhcCCceEEe-----------cCCCch--------HHHHHHHHhhCCCCeEEEEechHHH
Q 014237 319 KTYQMNPANYREALVEAQADESEGADILLV-----------KPGLPY--------LDVIRLLRDKYPLPIAAYQVSGEYS 379 (428)
Q Consensus 319 ktYQmdpaN~~EAlrE~~lDi~EGADilMV-----------KPal~Y--------LDII~~vk~~~~lPvaaYqVSGEYa 379 (428)
-.-|+--.|.++..+.+.+=.+-|+|.|=+ |=+..+ .+|++.+++.+++||.+.- +
T Consensus 65 ~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKi-r---- 139 (319)
T TIGR00737 65 ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKI-R---- 139 (319)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEE-E----
Confidence 347887777777666665444569998843 222333 4899999999999998773 2
Q ss_pred HHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 380 MIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 380 MIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
.||-+...-..|....+..+|+|.|.
T Consensus 140 -------~g~~~~~~~~~~~a~~l~~~G~d~i~ 165 (319)
T TIGR00737 140 -------IGWDDAHINAVEAARIAEDAGAQAVT 165 (319)
T ss_pred -------cccCCCcchHHHHHHHHHHhCCCEEE
Confidence 25544333456777778889999884
No 183
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=61.71 E-value=22 Score=34.79 Aligned_cols=96 Identities=10% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCCCCChHHHHHHHHhchhcCCceEEecCCC-------chHHHHHHHHhhCCCC-eEEEEechHHHHHHHHHHC--CCCc
Q 014237 322 QMNPANYREALVEAQADESEGADILLVKPGL-------PYLDVIRLLRDKYPLP-IAAYQVSGEYSMIKAGGAL--KMID 391 (428)
Q Consensus 322 QmdpaN~~EAlrE~~lDi~EGADilMVKPal-------~YLDII~~vk~~~~lP-vaaYqVSGEYaMIkaAa~~--G~iD 391 (428)
.+-..|.+|.+.++..=..+|||+|=.-=.. .-.++++.+++. ++| +++|--..|..+++.|.+. .++|
T Consensus 26 pi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~-~~p~I~T~R~~~~~~~l~~a~~~~~d~vD 104 (229)
T PRK01261 26 SIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEM-DIDYIFTYRGVDARKYYETAIDKMPPAVD 104 (229)
T ss_pred EeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhc-CCCEEEEEcCCCHHHHHHHHHhhCCCEEE
Confidence 3456788999988877677999997432221 135666667665 555 5778766677888888864 4556
Q ss_pred hhhHHHHHHHHHHHhcccEeehhcHHHH
Q 014237 392 EQRVMMESLMCLRRAGADIILTYFALQA 419 (428)
Q Consensus 392 ~~~~vlEsL~~~kRAGAd~IiTYfA~e~ 419 (428)
-+--.+..+ ..++.|..+|++||++..
T Consensus 105 IEl~~~~~~-~~~~~~~kvIvS~Htp~~ 131 (229)
T PRK01261 105 LDINLIGKL-EFRPRNTMLMVSYHTNNS 131 (229)
T ss_pred EEcccchhh-hhhcCCCeEEEEeCCCCH
Confidence 542211223 346789999999998743
No 184
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=61.45 E-value=72 Score=29.86 Aligned_cols=89 Identities=25% Similarity=0.417 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
.+.+.++.+.+.|+.+|++ +. + -.++.+|+.+|++-|++|+.+
T Consensus 3 ~~~~~l~~l~~~g~dgi~v-~~-~-------------------g~~~~~k~~~~~~~i~~~~~~---------------- 45 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILV-SN-P-------------------GLLELLKELGPDLKIIADYSL---------------- 45 (233)
T ss_pred HHHHHHHHHHhCCCCEEEE-cC-H-------------------HHHHHHHHhCCCCcEEEecCc----------------
Confidence 4788899999999999776 32 1 278999999999999999876
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC-CCCCceeech
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE-GFQHVSIMSY 293 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~-Gf~~v~IMSY 293 (428)
.|-|..|+..+.+. |++-|-.|-=+ ....|++..... +. .+-|+.|
T Consensus 46 nv~N~~s~~~~~~~-------G~~~i~ls~EL--~~~ei~~i~~~~~~~-~~Ev~v~ 92 (233)
T PF01136_consen 46 NVFNSESARFLKEL-------GASRITLSPEL--SLEEIKEIAENSPGV-PLEVIVH 92 (233)
T ss_pred cCCCHHHHHHHHHc-------CCCEEEECccC--CHHHHHHHHHhCCCC-eEEEEEe
Confidence 25688888887654 88766555444 556666655555 43 3444444
No 185
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=61.40 E-value=31 Score=34.20 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=49.2
Q ss_pred ccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhC----CCCeEEEEechHHHHHHHHHHCCCCchh
Q 014237 318 KKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY----PLPIAAYQVSGEYSMIKAGGALKMIDEQ 393 (428)
Q Consensus 318 RktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~----~lPvaaYqVSGEYaMIkaAa~~G~iD~~ 393 (428)
.+--.+.+.|..|+.... +.|||+||+=| .+.+-++++.+.. ++|+.| -|-|+
T Consensus 181 ~~~I~vev~t~eea~~A~----~~gaD~I~ld~--~~~e~l~~~v~~i~~~~~i~i~a---------------sGGIt-- 237 (269)
T cd01568 181 EKKIEVEVETLEEAEEAL----EAGADIIMLDN--MSPEELKEAVKLLKGLPRVLLEA---------------SGGIT-- 237 (269)
T ss_pred CCeEEEecCCHHHHHHHH----HcCCCEEEECC--CCHHHHHHHHHHhccCCCeEEEE---------------ECCCC--
Confidence 344667778888877664 57999999966 4557777655544 456543 45566
Q ss_pred hHHHHHHHHHHHhcccEeeh
Q 014237 394 RVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 394 ~~vlEsL~~~kRAGAd~IiT 413 (428)
.|.+..+..+|||.|-+
T Consensus 238 ---~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 238 ---LENIRAYAETGVDVIST 254 (269)
T ss_pred ---HHHHHHHHHcCCCEEEE
Confidence 45567888999999976
No 186
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.21 E-value=17 Score=36.80 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=60.4
Q ss_pred ccccchhhhhcCCCC-CCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh----hC-CCCeEEEE
Q 014237 300 SFYGPFREALDSNPR-FGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD----KY-PLPIAAYQ 373 (428)
Q Consensus 300 afYGPFRdAa~Sap~-fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~----~~-~lPvaaYq 373 (428)
.|||-+.+|+...-+ ++..+.-.+...|.+||...+ +.|||+||+=+-.+ +-++++-+ .. ++|+.|
T Consensus 177 ~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~----~~GaD~I~LDn~~~--e~l~~av~~~~~~~~~i~leA-- 248 (288)
T PRK07428 177 QAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEAL----EYGADIIMLDNMPV--DLMQQAVQLIRQQNPRVKIEA-- 248 (288)
T ss_pred HHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHH----HcCCCEEEECCCCH--HHHHHHHHHHHhcCCCeEEEE--
Confidence 466778888766443 233344677788999987665 58999999985433 44444332 22 456543
Q ss_pred echHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHH
Q 014237 374 VSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQ 418 (428)
Q Consensus 374 VSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e 418 (428)
.|-|++ |.+..+..+|+|.|-+-..-.
T Consensus 249 -------------sGGIt~-----~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 249 -------------SGNITL-----ETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred -------------ECCCCH-----HHHHHHHHcCCCEEEEchhhh
Confidence 456764 456677899999998765443
No 187
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=61.12 E-value=45 Score=32.29 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=40.5
Q ss_pred chHHHHHHHHhhCCCCeEE--E-Ee---chHHHHHHHHHHCCCC-----c-hhhHHHHHHHHHHHhcccEee
Q 014237 353 PYLDVIRLLRDKYPLPIAA--Y-QV---SGEYSMIKAGGALKMI-----D-EQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 353 ~YLDII~~vk~~~~lPvaa--Y-qV---SGEYaMIkaAa~~G~i-----D-~~~~vlEsL~~~kRAGAd~Ii 412 (428)
.++++++++|+..++|+.. | +. .|.=.+++.++++|.= | .-+-..+.+..+|+.|.+.|+
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 3699999999988889655 5 43 2444567777777751 1 112345677788888888775
No 188
>smart00642 Aamy Alpha-amylase domain.
Probab=60.92 E-value=43 Score=30.74 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeeccc
Q 014237 155 WRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALD 222 (428)
Q Consensus 155 ~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~------------v~rAIr~iK~~~Pdl~VitDVcLc 222 (428)
+. .+.+++..+.++|+++|-|=|+.+. .....+...|++-.. +++.|+.++++ .+-||.|+-+.
T Consensus 18 ~~-gi~~~l~yl~~lG~~~I~l~Pi~~~-~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~--Gi~vilD~V~N 93 (166)
T smart00642 18 LQ-GIIEKLDYLKDLGVTAIWLSPIFES-PQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHAR--GIKVILDVVIN 93 (166)
T ss_pred HH-HHHHHHHHHHHCCCCEEEECcceeC-CCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHC--CCEEEEEECCC
Confidence 54 6889999999999999999775322 111012233333222 45666666664 79999999986
Q ss_pred CCCC
Q 014237 223 PYSS 226 (428)
Q Consensus 223 ~YTs 226 (428)
....
T Consensus 94 H~~~ 97 (166)
T smart00642 94 HTSD 97 (166)
T ss_pred CCCC
Confidence 5544
No 189
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=60.81 E-value=31 Score=34.87 Aligned_cols=56 Identities=30% Similarity=0.528 Sum_probs=38.6
Q ss_pred CCceEE-------ecCCCc-------hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc
Q 014237 342 GADILL-------VKPGLP-------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 407 (428)
Q Consensus 342 GADilM-------VKPal~-------YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAG 407 (428)
|||.|- ++|.+. +.+|++.+++..++||.+= .++ .++ -+.|....+.++|
T Consensus 125 gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vK-l~p------------~~~---~~~~~a~~l~~~G 188 (325)
T cd04739 125 GADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVK-LSP------------FFS---ALAHMAKQLDAAG 188 (325)
T ss_pred CCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEE-cCC------------Ccc---CHHHHHHHHHHcC
Confidence 677773 355542 4799999999999999875 232 122 2566667778889
Q ss_pred ccEeeh
Q 014237 408 ADIILT 413 (428)
Q Consensus 408 Ad~IiT 413 (428)
||.|+.
T Consensus 189 adgi~~ 194 (325)
T cd04739 189 ADGLVL 194 (325)
T ss_pred CCeEEE
Confidence 998864
No 190
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=60.70 E-value=34 Score=35.17 Aligned_cols=129 Identities=20% Similarity=0.289 Sum_probs=75.2
Q ss_pred HHHhhhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCc--ccCc
Q 014237 114 AMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSP--TGDE 191 (428)
Q Consensus 114 ~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~--~Gs~ 191 (428)
..|++.+-+.| ||.|.=+..--. . ..+...|+++.+.|+-.+-+=-.+-+ +|-. .|.+
T Consensus 69 ~vrrI~~a~~l-------Pv~vD~dtGfG~-----------~-~nvartV~~~~~aG~agi~iEDq~~p-k~cgh~~gk~ 128 (289)
T COG2513 69 DARRITDAVDL-------PVLVDIDTGFGE-----------A-LNVARTVRELEQAGAAGIHIEDQVGP-KRCGHLPGKE 128 (289)
T ss_pred HHHHHHhhcCC-------ceEEeccCCCCc-----------H-HHHHHHHHHHHHcCcceeeeeecccc-hhcCCCCCCC
Confidence 44666666654 888764433100 1 13788999999999998766111000 0100 2333
Q ss_pred CcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 014237 192 AYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (428)
Q Consensus 192 A~~~~g~v~rAIr~iK~~~P--dl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM 269 (428)
-++.+-.+ +=|++++++-+ +++|++=+ + ..+. +| -|+++ +-|..|.+||||+|-|-.|-
T Consensus 129 l~~~~e~v-~rIkAa~~a~~~~~fvi~ART------d----a~~~-~~---ld~AI----~Ra~AY~eAGAD~if~~al~ 189 (289)
T COG2513 129 LVSIDEMV-DRIKAAVEARRDPDFVIIART------D----ALLV-EG---LDDAI----ERAQAYVEAGADAIFPEALT 189 (289)
T ss_pred cCCHHHHH-HHHHHHHHhccCCCeEEEeeh------H----HHHh-cc---HHHHH----HHHHHHHHcCCcEEccccCC
Confidence 33333333 34677777665 77777532 1 0111 12 24555 45789999999999999999
Q ss_pred CchHHHHHHHHHHC
Q 014237 270 DGRVGAIRAALDAE 283 (428)
Q Consensus 270 DGRV~aIR~aLD~~ 283 (428)
| ...||+-.+.-
T Consensus 190 ~--~e~i~~f~~av 201 (289)
T COG2513 190 D--LEEIRAFAEAV 201 (289)
T ss_pred C--HHHHHHHHHhc
Confidence 9 77777665443
No 191
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=60.69 E-value=13 Score=33.52 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceeec
Q 014237 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMS 292 (428)
Q Consensus 241 ND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV---~aIR~aLD~~Gf~~v~IMS 292 (428)
.|-|.+.+++.|..+ +||+|+=|.||-... ..+.+.|.++|+.++.||-
T Consensus 35 ~~v~~e~~v~aa~~~---~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~viv 86 (128)
T cd02072 35 VLSPQEEFIDAAIET---DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV 86 (128)
T ss_pred CCCCHHHHHHHHHHc---CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEE
Confidence 577888898888755 999999999998875 5566788899997887763
No 192
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=60.47 E-value=33 Score=36.97 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhh-------hhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRd-------Aa~Sap~- 314 (428)
-|-+.+++++..++..| |+|= |.+++.|- =|-||+| |++.+-+
T Consensus 170 lsp~~~a~~~y~~~~GG-D~IK----------------DDE~l~dq------------~~~p~~eRv~~~~~a~~~a~~e 220 (439)
T cd08211 170 LRPKPFAEACYAFWLGG-DFIK----------------NDEPQANQ------------PFCPLKKVIPLVADAMRRAQDE 220 (439)
T ss_pred CCHHHHHHHHHHHHhcC-Cccc----------------cccccCCC------------CCCCHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999 9973 33443222 2334431 2211111
Q ss_pred CCCccccCCCCC--ChHHHHHHHHhchhcCC-----ceEEecCCCchHHHHHHHHhh-CCCCeEEE-EechHHHHHHHHH
Q 014237 315 FGDKKTYQMNPA--NYREALVEAQADESEGA-----DILLVKPGLPYLDVIRLLRDK-YPLPIAAY-QVSGEYSMIKAGG 385 (428)
Q Consensus 315 fgDRktYQmdpa--N~~EAlrE~~lDi~EGA-----DilMVKPal~YLDII~~vk~~-~~lPvaaY-qVSGEYaMIkaAa 385 (428)
-|-|+.|-.+-. ..+|.++.++.=.++|+ ..|||=+...=++.++.+++. .++|+-+- ..+|-| ....-
T Consensus 221 TG~~~~ya~NiTa~~~~em~~ra~~a~~~gg~~~G~~~vMv~~~~~G~~al~~lr~~~~~l~IhaHrA~~ga~--~r~~~ 298 (439)
T cd08211 221 TGEAKLFSANITADDPDEMIARGEYILEAFGPNAGHVAFLVDGYVAGPAAVTTARRRFPDQFLHYHRAGHGAV--TSPQS 298 (439)
T ss_pred hCCcceEEecCCCCCHHHHHHHHHHHHHhcCcccCceEEEECcccchHHHHHHHHhhCCCcEEEecccccccc--ccccc
Confidence 277889988877 57999999988888877 999999998779999999985 47987732 122221 11011
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEeehh
Q 014237 386 ALKMIDEQRVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 386 ~~G~iD~~~~vlEsL~~~kRAGAd~IiTY 414 (428)
+.|+ +. . ++= +-+|=||||.+.+-
T Consensus 299 ~~Gi-s~-~-vl~--kl~RLaGaD~~h~g 322 (439)
T cd08211 299 KRGY-TA-F-VLS--KMARLQGASGIHTG 322 (439)
T ss_pred CCCc-cH-H-HHH--HHHHhcCCCccccC
Confidence 2344 22 2 332 23556999999853
No 193
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=60.36 E-value=50 Score=32.12 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec
Q 014237 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVc 220 (428)
-.++++++++.|..=|.|=+. . --.| -.+..-++.||++| .++|+|+.
T Consensus 53 T~~ev~~l~~aGadIIAlDaT-~----------R~Rp-~~l~~li~~i~~~~--~l~MADis 100 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDAT-D----------RPRP-ETLEELIREIKEKY--QLVMADIS 100 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-S-S----------SS-S-S-HHHHHHHHHHCT--SEEEEE-S
T ss_pred CHHHHHHHHHcCCCEEEEecC-C----------CCCC-cCHHHHHHHHHHhC--cEEeeecC
Confidence 478999999999999888553 1 1333 56788999999999 99999964
No 194
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=60.23 E-value=47 Score=33.76 Aligned_cols=96 Identities=24% Similarity=0.276 Sum_probs=57.8
Q ss_pred hccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEec---------CCC--c---hHHHHHHHH
Q 014237 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVK---------PGL--P---YLDVIRLLR 362 (428)
Q Consensus 297 yASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK---------Pal--~---YLDII~~vk 362 (428)
+.++| --.|+-.-+-|-+++--..|....+ .+-++++...+ +||.+-+- |.. . ++|+|+.++
T Consensus 100 ~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~-~~~~~~~i~~i--~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~ 175 (333)
T TIGR02151 100 TADTF-EVVREEAPNGPLIANIGAPQLVEGG-PEEAQEAIDMI--EADALAIHLNVLQELVQPEGDRNFKGWLEKIAEIC 175 (333)
T ss_pred hHhHH-HHHHHhCCCCcEEeecCchhhcccc-HHHHHHHHHHh--cCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHH
Confidence 44555 4466655566666555555554333 34445555455 35554332 221 1 469999999
Q ss_pred hhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 363 DKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 363 ~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+..++||.+=.| | .| ...|....+..+|+|+|..
T Consensus 176 ~~~~vPVivK~~-g----------~g------~~~~~a~~L~~aGvd~I~V 209 (333)
T TIGR02151 176 SQLSVPVIVKEV-G----------FG------ISKEVAKLLADAGVSAIDV 209 (333)
T ss_pred HhcCCCEEEEec-C----------CC------CCHHHHHHHHHcCCCEEEE
Confidence 999999996544 3 12 1256677788889998864
No 195
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=60.05 E-value=39 Score=34.08 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=29.4
Q ss_pred ChHHHHHHHHhchhcCCceEEecC---C-----CchHHHHHHHHhhCCCCeEE
Q 014237 327 NYREALVEAQADESEGADILLVKP---G-----LPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVKP---a-----l~YLDII~~vk~~~~lPvaa 371 (428)
+.++|.+.. +.|+|+|.+.. + .+-++++.++++.+++||.+
T Consensus 118 s~~~a~~a~----~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPvia 166 (307)
T TIGR03151 118 SVALAKRME----KAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIA 166 (307)
T ss_pred CHHHHHHHH----HcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEE
Confidence 445554333 45999999843 1 23589999999999999876
No 196
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=59.83 E-value=82 Score=29.68 Aligned_cols=69 Identities=25% Similarity=0.258 Sum_probs=36.6
Q ss_pred hhcCCceE--Ee--cCCCch---HHHHHHHHh---hCCCCeEEEEec--hHHHHHHHHHHCCCCchhhHHHHHHHHHHHh
Q 014237 339 ESEGADIL--LV--KPGLPY---LDVIRLLRD---KYPLPIAAYQVS--GEYSMIKAGGALKMIDEQRVMMESLMCLRRA 406 (428)
Q Consensus 339 i~EGADil--MV--KPal~Y---LDII~~vk~---~~~lPvaaYqVS--GEYaMIkaAa~~G~iD~~~~vlEsL~~~kRA 406 (428)
++-|||.| ++ |.. .+ ++.++++++ +.++|+.. ++- |.. + ... ++. ..+-++......+
T Consensus 86 ~~~Ga~~v~~~~~~~~~-~~~~~~~~i~~v~~~~~~~g~~~ii-e~~~~g~~-~-----~~~-~~~-~~i~~~~~~a~~~ 155 (235)
T cd00958 86 VRLGADAVGVTVYVGSE-EEREMLEELARVAAEAHKYGLPLIA-WMYPRGPA-V-----KNE-KDP-DLIAYAARIGAEL 155 (235)
T ss_pred HHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEE-EEeccCCc-c-----cCc-cCH-HHHHHHHHHHHHH
Confidence 46799866 33 422 23 334555543 56899876 221 100 0 000 122 2333335556678
Q ss_pred cccEeehhcHH
Q 014237 407 GADIILTYFAL 417 (428)
Q Consensus 407 GAd~IiTYfA~ 417 (428)
|||+|-|+|..
T Consensus 156 GaD~Ik~~~~~ 166 (235)
T cd00958 156 GADIVKTKYTG 166 (235)
T ss_pred CCCEEEecCCC
Confidence 99999999853
No 197
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=59.79 E-value=22 Score=35.38 Aligned_cols=110 Identities=24% Similarity=0.328 Sum_probs=73.9
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhccccccch
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM--------MDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPF 305 (428)
++||.|| -+.++.|.+.. .+.|+|-|.+.+. .|=|...+|.+.+... .+++||.-..
T Consensus 13 ~~dg~iD-~~~l~~lv~~~---~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~---------- 77 (294)
T TIGR02313 13 KRNGDID-EEALRELIEFQ---IEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGTG---------- 77 (294)
T ss_pred CCCCCcC-HHHHHHHHHHH---HHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEECC----------
Confidence 4567776 44555555544 4589998876654 2457777777777665 4677774321
Q ss_pred hhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhC-CCCeEEEEechH
Q 014237 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKY-PLPIAAYQVSGE 377 (428)
Q Consensus 306 RdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~-~lPvaaYqVSGE 377 (428)
..|.+|+++.++.=.+-|||.+||=|=..| ++=.+.+.+.+ ++|+..||.-+-
T Consensus 78 -------------------~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~ 138 (294)
T TIGR02313 78 -------------------ALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGR 138 (294)
T ss_pred -------------------cchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchh
Confidence 125677777776656779999999884322 45556777888 899999997654
No 198
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=59.76 E-value=6.4 Score=36.92 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=52.0
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 014237 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (428)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGH 229 (428)
..|++.+ .+.+.++.+.++|+..|.|= |..|. ..|+. +..-++.+|+.+|++ +..-|+|
T Consensus 131 ~~~~~~~-~~~~~~~~~~~~g~~~i~l~--------Dt~G~--~~P~~-v~~lv~~~~~~~~~~---------~l~~H~H 189 (237)
T PF00682_consen 131 ASRTDPE-ELLELAEALAEAGADIIYLA--------DTVGI--MTPED-VAELVRALREALPDI---------PLGFHAH 189 (237)
T ss_dssp TGGSSHH-HHHHHHHHHHHHT-SEEEEE--------ETTS---S-HHH-HHHHHHHHHHHSTTS---------EEEEEEB
T ss_pred cccccHH-HHHHHHHHHHHcCCeEEEee--------CccCC--cCHHH-HHHHHHHHHHhccCC---------eEEEEec
Confidence 4577775 59999999999999887661 22232 22322 567899999999982 3345888
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014237 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (428)
Q Consensus 230 cGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPS 266 (428)
+- -|- -...++.-.+||||+|--|
T Consensus 190 nd----~Gl---------a~An~laA~~aGa~~id~t 213 (237)
T PF00682_consen 190 ND----LGL---------AVANALAALEAGADRIDGT 213 (237)
T ss_dssp BT----TS----------HHHHHHHHHHTT-SEEEEB
T ss_pred CC----ccc---------hhHHHHHHHHcCCCEEEcc
Confidence 52 231 1334677789999998443
No 199
>PRK05926 hypothetical protein; Provisional
Probab=59.73 E-value=11 Score=38.97 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=69.5
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTs 226 (428)
-+.-|.++.+ ++++.++++ +.|++.|.|-+-..+. + +-..+...++.||+.||++-+-+ +|.
T Consensus 93 ~~~~~~ls~e-eI~~~a~~a-~~G~~ei~iv~G~~p~---------~-~~e~~~e~i~~Ik~~~p~i~i~a------~s~ 154 (370)
T PRK05926 93 DPKGWFYTPD-QLVQSIKEN-PSPITETHIVAGCFPS---------C-NLAYYEELFSKIKQNFPDLHIKA------LTA 154 (370)
T ss_pred CcccccCCHH-HHHHHHHHH-hcCCCEEEEEeCcCCC---------C-CHHHHHHHHHHHHHhCCCeeEEE------CCH
Confidence 3456788886 699999999 7999999885421111 1 11345678999999999886432 110
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHH-cCC--------CeecCCCCC-CchHHHHHHHHHHCCCC
Q 014237 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGA--------DVVSPSDMM-DGRVGAIRAALDAEGFQ 286 (428)
Q Consensus 227 hGHcGil~~~g~IdND~Tl~~Lak~Als~A~-AGA--------DiVAPSDMM-DGRV~aIR~aLD~~Gf~ 286 (428)
.=-|.+ .....+..+++++.|.+.-+..-- .|+ +.+.|.... |-++..+|. +.+.|+.
T Consensus 155 ~Ei~~~-~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~-a~~~Gi~ 222 (370)
T PRK05926 155 IEYAYL-SKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKT-AHSLGIP 222 (370)
T ss_pred HHHHHH-HhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCc
Confidence 000111 112234556777776665442222 133 335565554 567777664 4577773
No 200
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=59.73 E-value=22 Score=34.54 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=55.2
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014237 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (428)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTsh 227 (428)
|...|++.+ .+.+.++++.+.|+..|.| +|..|. ..|+ -+.+-++.||+.+|+. |+. ..-|
T Consensus 135 ~~~~~~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~--~~P~-~v~~lv~~l~~~~~~~----~i~---l~~H 195 (268)
T cd07940 135 EDATRTDLD-FLIEVVEAAIEAGATTINI--------PDTVGY--LTPE-EFGELIKKLKENVPNI----KVP---ISVH 195 (268)
T ss_pred ecCCCCCHH-HHHHHHHHHHHcCCCEEEE--------CCCCCC--CCHH-HHHHHHHHHHHhCCCC----cee---EEEE
Confidence 344567775 5888999999999887654 344554 2232 2446788999999874 333 3568
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014237 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (428)
Q Consensus 228 GHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM 268 (428)
+|+-. | + =..-++.-.++||++|=-|-.
T Consensus 196 ~Hn~~----G-------l--A~An~laAi~aG~~~iD~s~~ 223 (268)
T cd07940 196 CHNDL----G-------L--AVANSLAAVEAGARQVECTIN 223 (268)
T ss_pred ecCCc----c-------h--HHHHHHHHHHhCCCEEEEEee
Confidence 88532 1 1 112344445789999855543
No 201
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=59.67 E-value=19 Score=37.04 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=39.7
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCe
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDL 213 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl 213 (428)
+.++.+ +++++++.+.+.|++.|.|.|=-++.. .+-.-+.++++.||+.+|++
T Consensus 102 ~~ls~e-EI~~~a~~~~~~Gv~~i~lvgGe~p~~---------~~~e~l~~~i~~Ik~~~p~i 154 (371)
T PRK09240 102 KTLDEE-EIEREMAAIKKLGFEHILLLTGEHEAK---------VGVDYIRRALPIAREYFSSV 154 (371)
T ss_pred ccCCHH-HHHHHHHHHHhCCCCEEEEeeCCCCCC---------CCHHHHHHHHHHHHHhCCCc
Confidence 677886 699999999999999997754222211 12246788999999999865
No 202
>PLN02334 ribulose-phosphate 3-epimerase
Probab=59.62 E-value=98 Score=29.43 Aligned_cols=138 Identities=29% Similarity=0.379 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCCeecCCCCCCc-----------hHHHHHHHHHHCCCC-Cceeec----------hhhh--hcccccc
Q 014237 248 LCKQAVSQARAGADVVSPSDMMDG-----------RVGAIRAALDAEGFQ-HVSIMS----------YTAK--YASSFYG 303 (428)
Q Consensus 248 Lak~Als~A~AGADiVAPSDMMDG-----------RV~aIR~aLD~~Gf~-~v~IMS----------YsaK--yASafYG 303 (428)
|.++.-...++|+++|== |+||| .+.+||+. .... ++.+|- +.+. +-+--+|
T Consensus 22 l~~~l~~~~~~g~~~ihl-d~~d~~f~~~~~~g~~~~~~l~~~---~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~ 97 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHV-DVMDGHFVPNLTIGPPVVKALRKH---TDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIE 97 (229)
T ss_pred HHHHHHHHHHcCCCEEEE-ecccCCcCCccccCHHHHHHHHhc---CCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeec
Confidence 455555566789998876 89999 35555544 3333 666665 1211 1111344
Q ss_pred ------chhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcC-CceEEe---cCCC-------chHHHHHHHHhhC-
Q 014237 304 ------PFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLV---KPGL-------PYLDVIRLLRDKY- 365 (428)
Q Consensus 304 ------PFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EG-ADilMV---KPal-------~YLDII~~vk~~~- 365 (428)
|.+ .+...-..|=+-..-..|.+..|.+++.. ++| +|.|++ -|+. .-++-|+++++..
T Consensus 98 q~~~d~~~~-~~~~i~~~g~~iGls~~~~t~~~~~~~~~---~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~ 173 (229)
T PLN02334 98 QASTIHLHR-LIQQIKSAGMKAGVVLNPGTPVEAVEPVV---EKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYP 173 (229)
T ss_pred cccchhHHH-HHHHHHHCCCeEEEEECCCCCHHHHHHHH---hccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCC
Confidence 111 11111112223334445666677666543 443 999954 3321 1367788888764
Q ss_pred CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 366 PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 366 ~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+.|+.+ -|-|+ .|.+..++.+|||.|+.
T Consensus 174 ~~~I~a---------------~GGI~-----~e~i~~l~~aGad~vvv 201 (229)
T PLN02334 174 ELDIEV---------------DGGVG-----PSTIDKAAEAGANVIVA 201 (229)
T ss_pred CCcEEE---------------eCCCC-----HHHHHHHHHcCCCEEEE
Confidence 467544 34454 45777889999998753
No 203
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=59.54 E-value=1.6e+02 Score=27.78 Aligned_cols=186 Identities=22% Similarity=0.244 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
+.++.++.+.+.|+..+++..+ . .+..++ |+-...++.|.+..+ +-|+ + +|
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl-~---~~~~~~------~~n~~~~~~i~~~~~-~pv~----------------~--~g 81 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDI-D---ASKRGR------EPLFELISNLAEECF-MPLT----------------V--GG 81 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeC-C---CcccCC------CCCHHHHHHHHHhCC-CCEE----------------E--EC
Confidence 3788888999999999999774 3 222222 333566777777632 1111 2 35
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecC-CCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccc-hhhhhcCCCCC
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSP-SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP-FREALDSNPRF 315 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAP-SDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGP-FRdAa~Sap~f 315 (428)
-|.+-+.++.+.+ +|||.|-= +-.++ ....++++.+..| .+..+.|.-+| -...++ ++-+..
T Consensus 82 gi~~~~d~~~~~~-------~G~~~vilg~~~l~-~~~~~~~~~~~~~-~~~i~vsld~~--~~~~~~~~~v~~~----- 145 (232)
T TIGR03572 82 GIRSLEDAKKLLS-------LGADKVSINTAALE-NPDLIEEAARRFG-SQCVVVSIDVK--KELDGSDYKVYSD----- 145 (232)
T ss_pred CCCCHHHHHHHHH-------cCCCEEEEChhHhc-CHHHHHHHHHHcC-CceEEEEEEec--cCCCCCcEEEEEC-----
Confidence 5666666655433 58886543 33333 2356666665544 22233444332 221122 221111
Q ss_pred CCccccCCCCCChHHHHHHHHhchhcCCceEEecC-------CCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 014237 316 GDKKTYQMNPANYREALVEAQADESEGADILLVKP-------GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 388 (428)
Q Consensus 316 gDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKP-------al~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G 388 (428)
|-.+.- ..+..|..++. .+.|+|.|.+-. ..+.+++++++++..++||.+ .|
T Consensus 146 ~~~~~~---~~~~~~~~~~~---~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia---------------~G 204 (232)
T TIGR03572 146 NGRRAT---GRDPVEWAREA---EQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIA---------------LG 204 (232)
T ss_pred CCcccC---CCCHHHHHHHH---HHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEE---------------EC
Confidence 111111 22334444444 367999888755 235799999999999999876 45
Q ss_pred CCchhhHHHHHHHH-HHHhcccEeeh
Q 014237 389 MIDEQRVMMESLMC-LRRAGADIILT 413 (428)
Q Consensus 389 ~iD~~~~vlEsL~~-~kRAGAd~IiT 413 (428)
.+.. .|-+.. ++++|||.|+.
T Consensus 205 Gi~s----~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 205 GAGS----LDDLVEVALEAGASAVAA 226 (232)
T ss_pred CCCC----HHHHHHHHHHcCCCEEEE
Confidence 5543 233334 77889998874
No 204
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=59.50 E-value=33 Score=40.89 Aligned_cols=229 Identities=17% Similarity=0.168 Sum_probs=125.7
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHc 230 (428)
|+.--|+-+...++++.+.||.-+-+|=- +|.=-=+..+|+.+|+.- .++-.|+| ||.+
T Consensus 619 y~~ypd~vv~~f~~~~~~~GidifrifD~-------------lN~~~n~~~~~~~~~~~g----~~~~~~i~-yt~~--- 677 (1143)
T TIGR01235 619 YTNYPDNVVKYFVKQAAQGGIDIFRVFDS-------------LNWVENMRVGMDAVAEAG----KVVEAAIC-YTGD--- 677 (1143)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEECcc-------------CcCHHHHHHHHHHHHHcC----CEEEEEEE-Eecc---
Confidence 33333544666788889999998888743 333334667888888863 36667777 7632
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHHC-C--CCCceeechhhhhcc
Q 014237 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDAE-G--FQHVSIMSYTAKYAS 299 (428)
Q Consensus 231 Gil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~~-G--f~~v~IMSYsaKyAS 299 (428)
+++....+. |++.+.+.|-...++|||+|+=.||.= -.|.+||+.++-- + ++|+.=|+-+.-.+.
T Consensus 678 -~~d~~~~~~---~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA 753 (1143)
T TIGR01235 678 -ILDPARPKY---DLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAA 753 (1143)
T ss_pred -CCCcCCCCC---CHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHH
Confidence 333222233 466666666667889999999999974 3567777765210 1 144444444443333
Q ss_pred ccccchhhhhcCCCC-CCCccccCCCCCChHHHHHHHHh--chhcCCceEEecCCCchHHHHHHHHhhCCC-------Ce
Q 014237 300 SFYGPFREALDSNPR-FGDKKTYQMNPANYREALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKYPL-------PI 369 (428)
Q Consensus 300 afYGPFRdAa~Sap~-fgDRktYQmdpaN~~EAlrE~~l--Di~EGADilMVKPal~YLDII~~vk~~~~l-------Pv 369 (428)
.--| =|.+++|-. +| -.+.|=+ -|.+..+.. +.+-|-|+=.+...-.|+-=+|..-..|.. =|
T Consensus 754 ~eaG--ad~vD~ai~gl~-G~ts~p~----~e~~v~~L~~~~~~tgidl~~l~~is~~~~~vr~~y~~~~~~~~~~~~~v 826 (1143)
T TIGR01235 754 VEAG--VDVVDVAVDSMS-GLTSQPS----LGAIVAALEGSERDPGLNVAWIRELSAYWEAVRNLYAAFESDLKGPASEV 826 (1143)
T ss_pred HHhC--CCEEEecchhhc-CCCCCHh----HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCcCCCcCe
Confidence 3333 133444332 22 2333332 234444333 345567766666655555444443333321 13
Q ss_pred EEEEec-hHHHHHHH-HHHCCCCchhhHHHHHHHHHHHhcccEe
Q 014237 370 AAYQVS-GEYSMIKA-GGALKMIDEQRVMMESLMCLRRAGADII 411 (428)
Q Consensus 370 aaYqVS-GEYaMIka-Aa~~G~iD~~~~vlEsL~~~kRAGAd~I 411 (428)
--||+= |-|+=++. +.+.|..|.=.-|+|.....++-.-|+|
T Consensus 827 ~~~~~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~lG~~~ 870 (1143)
T TIGR01235 827 YLHEMPGGQYTNLQFQARSLGLGDRWHEVKQAYREANQMFGDIV 870 (1143)
T ss_pred EEecCCCcccchHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCc
Confidence 334443 45665544 6778888765555555555555444554
No 205
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=59.24 E-value=30 Score=35.96 Aligned_cols=53 Identities=32% Similarity=0.458 Sum_probs=39.9
Q ss_pred hcCCceEEe--------cCCCch--HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhccc
Q 014237 340 SEGADILLV--------KPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 409 (428)
Q Consensus 340 ~EGADilMV--------KPal~Y--LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd 409 (428)
++|||.|.+ ||+.+- ++.++.+++.+++|++|. |-|+.+ .+..++.+||+
T Consensus 258 ~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~Ai---------------GGI~~~-----ni~~l~~~Ga~ 317 (347)
T PRK02615 258 AEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAI---------------GGIDKS-----NIPEVLQAGAK 317 (347)
T ss_pred HcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE---------------CCCCHH-----HHHHHHHcCCc
Confidence 689999987 665433 799999999999999874 566754 34566788888
Q ss_pred Eee
Q 014237 410 IIL 412 (428)
Q Consensus 410 ~Ii 412 (428)
.|-
T Consensus 318 gVA 320 (347)
T PRK02615 318 RVA 320 (347)
T ss_pred EEE
Confidence 763
No 206
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=59.24 E-value=50 Score=33.26 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=33.8
Q ss_pred HHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 014237 356 DVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 356 DII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYf 415 (428)
++++++++ .+++|.+|-|..|+.-+- +|...-..|.+..+.+.|.|.|||-|
T Consensus 257 ~~v~~a~~-~gl~v~~wTvn~~~~~~~-------~~~~~~~~~~~~~l~~~GVdgiiTD~ 308 (309)
T cd08602 257 DLVEDAHA-AGLQVHPYTFRNENTFLP-------PDFFGDPYAEYRAFLDAGVDGLFTDF 308 (309)
T ss_pred HHHHHHHH-cCCEEEEEEecCCCcccC-------cccCCCHHHHHHHHHHhCCCEEeCCC
Confidence 77887665 589999999986642211 22222223445555668999999965
No 207
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=58.76 E-value=38 Score=33.40 Aligned_cols=115 Identities=23% Similarity=0.348 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCc--ccCcCcCCCCCHHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeec
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSP--TGDEAYNDNGLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVR 234 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~--~Gs~A~~~~g~v~rAIr~iK~~~Pd-l~VitDVcLc~YTshGHcGil~ 234 (428)
.|...+..+.++||+.|++..= +..+.. ....-++-+ -...-|+.|++.+.+ ..+- |+..| .||...-
T Consensus 86 ~l~~~L~~~~~~Gi~niL~l~G--D~~~~g~~~~~~~~~~~-~~~~Li~~i~~~~~~~~~i~--va~~P---~~hp~~~- 156 (287)
T PF02219_consen 86 ALQSDLLGAHALGIRNILALTG--DPPKGGDHFAKPVFDFD-YALDLIRLIRQEYGDDFSIG--VAGYP---EGHPEAP- 156 (287)
T ss_dssp HHHHHHHHHHHTT--EEEEESS---TSTTSSS----TTS-S-SHHHHHHHHHHHHGGGSEEE--EEE-T---THHTTCS-
T ss_pred HHHHHHHHHHHcCCCeEEEecC--CCCCCCccccCCCchhH-HHHHHHHHHHHhcCcccccc--cccCC---CCCcccc-
Confidence 5888899999999999998653 222221 111122211 245677888876665 3332 33344 5665211
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceee
Q 014237 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIM 291 (428)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~IM 291 (428)
+-+.-+++|.+ -.+||||.+=.-=--| ..+....+.+.+.|. +++|+
T Consensus 157 -----~~~~~~~~l~~----Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~-~~pIi 204 (287)
T PF02219_consen 157 -----DFEAELKRLKK----KIDAGADFIITQPFFDAEAFERFLDRLREAGI-DVPII 204 (287)
T ss_dssp -----SHHHHHHHHHH----HHHTTESEEEEEE-SSHHHHHHHHHHHHHTTH-TSEEE
T ss_pred -----CHHHHHHHHHH----HHHCCCCEEeccccCCHHHHHHHHHHHHHcCC-CCcEE
Confidence 12333444433 3589999988777777 566778888888986 55443
No 208
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=58.64 E-value=19 Score=35.88 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHc 230 (428)
||.+.+ .+.+.++++.+.|+..|-| +|..|..-=.. +.+-++.+|+.+|++ +..-|+|+
T Consensus 142 ~r~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~~~P~~---v~~l~~~l~~~~~~~---------~i~~H~Hn 200 (280)
T cd07945 142 MRDSPD-YVFQLVDFLSDLPIKRIML--------PDTLGILSPFE---TYTYISDMVKRYPNL---------HFDFHAHN 200 (280)
T ss_pred CcCCHH-HHHHHHHHHHHcCCCEEEe--------cCCCCCCCHHH---HHHHHHHHHhhCCCC---------eEEEEeCC
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014237 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (428)
Q Consensus 231 Gil~~~g~IdND~Tl~~Lak~Als~A~AGADiV 263 (428)
|.-.=..-++.-.++||++|
T Consensus 201 -------------d~Gla~AN~laA~~aGa~~v 220 (280)
T cd07945 201 -------------DYDLAVANVLAAVKAGIKGL 220 (280)
T ss_pred -------------CCCHHHHHHHHHHHhCCCEE
No 209
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=58.54 E-value=54 Score=35.56 Aligned_cols=92 Identities=15% Similarity=0.269 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHhchhcCCceEEecCCC----chHHHHHHHHhhCCCCeE-EEEech----------H-HHHHHHHHHCC
Q 014237 325 PANYREALVEAQADESEGADILLVKPGL----PYLDVIRLLRDKYPLPIA-AYQVSG----------E-YSMIKAGGALK 388 (428)
Q Consensus 325 paN~~EAlrE~~lDi~EGADilMVKPal----~YLDII~~vk~~~~lPva-aYqVSG----------E-YaMIkaAa~~G 388 (428)
..+.+|.+.++.....+|+|+|=.-=.+ .=.+.+.++.+.+++|+. .|.-.. | ..+++.+++.|
T Consensus 31 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 110 (529)
T PLN02520 31 ADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKWEGGQYEGDENKRQDALRLAMELG 110 (529)
T ss_pred CCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHHHCCCCCCCHHHHHHHHHHHHHhC
Confidence 4568888899988888999998322110 112445566666777864 333221 1 36778888776
Q ss_pred --CCchh----hHHHHHHHHHHHhcccEeehhcH
Q 014237 389 --MIDEQ----RVMMESLMCLRRAGADIILTYFA 416 (428)
Q Consensus 389 --~iD~~----~~vlEsL~~~kRAGAd~IiTYfA 416 (428)
|+|-+ +.+.+.+...++.|..+|++|+.
T Consensus 111 ~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~ 144 (529)
T PLN02520 111 ADYVDVELKVAHEFINSISGKKPEKCKVIVSSHN 144 (529)
T ss_pred CCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecC
Confidence 44543 35667788888899999999984
No 210
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=58.25 E-value=28 Score=32.87 Aligned_cols=73 Identities=21% Similarity=0.194 Sum_probs=46.0
Q ss_pred CCCCChHHHHHHHHhchhcCCceEEecCCCch-----HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHH
Q 014237 323 MNPANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMM 397 (428)
Q Consensus 323 mdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-----LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vl 397 (428)
+|..|..||++-+.. +.+-.| ++|+++++ +++|+.+|+... |+++ ....-|--..+-
T Consensus 5 lD~~~~~~a~~~~~~-~~~~v~--~iKig~~l~~~~G~~~v~~l~~~~~-~v~l--------------D~K~~Dig~t~~ 66 (213)
T TIGR01740 5 LDVTTKDEALDLADS-LGPEIE--VIKVGIDLLLDGGDKIIDELAKLNK-LIFL--------------DLKFADIPNTVK 66 (213)
T ss_pred CCCCCHHHHHHHHHh-cCCcCc--EEEECHHHHHhcCHHHHHHHHHcCC-CEEE--------------EEeecchHHHHH
Confidence 578889999886653 444455 69999987 577888888764 3431 122223334444
Q ss_pred HHHHHHHHhcccEeeh
Q 014237 398 ESLMCLRRAGADIILT 413 (428)
Q Consensus 398 EsL~~~kRAGAd~IiT 413 (428)
.....+.++|||++.-
T Consensus 67 ~~~~~~~~~gad~vTv 82 (213)
T TIGR01740 67 LQYESKIKQGADMVNV 82 (213)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 4555566788887643
No 211
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=58.24 E-value=27 Score=37.70 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhh-------hhcCCCC-
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNPR- 314 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRd-------Aa~Sap~- 314 (428)
-|.+.+++++-.++..|.|+|= |.+++.|- =|-||++ |++.+-.
T Consensus 158 lsp~~~A~~~~~~~~GGvD~IK----------------DDE~l~~~------------~~~p~~~Rv~~~~~a~~~a~~e 209 (450)
T cd08212 158 LSAKNYGRVVYECLRGGLDFTK----------------DDENINSQ------------PFMRWRDRFLFVAEAVNKAQAE 209 (450)
T ss_pred CCHHHHHHHHHHHHccCCcccc----------------cCccCCCC------------CCCCHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999873 34444332 2344432 2222111
Q ss_pred CCCccccCCCCC-C-hHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh---hCCCCeEEE-EechHHHHHHHHHHCC
Q 014237 315 FGDKKTYQMNPA-N-YREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAY-QVSGEYSMIKAGGALK 388 (428)
Q Consensus 315 fgDRktYQmdpa-N-~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~---~~~lPvaaY-qVSGEYaMIkaAa~~G 388 (428)
-|-|+-|-.+-. . ..|.++.+..=+++|++.+||=- +.=++.++.+++ ..++|+.+- ..+|-|. ..-..|
T Consensus 210 TG~~~~y~~NiTa~~~~em~~ra~~a~~~G~~~~mv~~-~~G~~~l~~l~~~a~~~~l~IhaHrA~~ga~~---r~~~~G 285 (450)
T cd08212 210 TGEVKGHYLNVTAGTMEEMYKRAEFAKELGSPIIMHDL-LTGFTAIQSLAKWCRDNGMLLHLHRAGHATYD---RQKNHG 285 (450)
T ss_pred hCCcceeeccccCCCHHHHHHHHHHHHHhCCCeEeeec-ccccchHHHHHHHhhhcCceEEeccccceecc---cCccCC
Confidence 277888988865 4 78999999999999999999983 336788888887 779998753 2222221 111234
Q ss_pred CCchhhHHHHHHHHHHHhcccEeeh
Q 014237 389 MIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 389 ~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+ +. .++ -+-+|=||||.|++
T Consensus 286 i-s~--~vl--~kl~RLaGaD~ih~ 305 (450)
T cd08212 286 I-HF--RVL--AKWLRLSGVDHIHA 305 (450)
T ss_pred c-CH--HHH--HHHHHHcCCCcccc
Confidence 3 22 334 33457799999885
No 212
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=58.02 E-value=88 Score=29.89 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC-eE-----EEeeecccCCCCCCcce
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LV-----IYTDVALDPYSSDGHDG 231 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pd-l~-----VitDVcLc~YTshGHcG 231 (428)
.+.+.++.+++-||+.+=+ . .|++.+ .++|+.|+++||+ ++ |++.=-+...-..|=++
T Consensus 23 ~~~~~~~a~~~gGi~~iEv----t--~~~~~~----------~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~f 86 (206)
T PRK09140 23 EALAHVGALIEAGFRAIEI----P--LNSPDP----------FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRL 86 (206)
T ss_pred HHHHHHHHHHHCCCCEEEE----e--CCCccH----------HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCE
Confidence 5899999999999997665 1 344422 2399999999995 44 33322344445667777
Q ss_pred eec
Q 014237 232 IVR 234 (428)
Q Consensus 232 il~ 234 (428)
++.
T Consensus 87 ivs 89 (206)
T PRK09140 87 IVT 89 (206)
T ss_pred EEC
Confidence 774
No 213
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=57.99 E-value=39 Score=35.52 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHc--CCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 014237 158 GLVQEVAKARDV--GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (428)
Q Consensus 158 ~l~~~v~~~~~~--GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~ 235 (428)
+-.+.+++++++ |+..|.| +.+ .| .+-.+.++|+.||+.||++.||+
T Consensus 108 ~d~er~~~L~~~~~g~D~ivi----D~A----hG-----hs~~~i~~ik~ik~~~P~~~vIa------------------ 156 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICI----DVA----NG-----YSEHFVQFVAKAREAWPDKTICA------------------ 156 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEE----ECC----CC-----cHHHHHHHHHHHHHhCCCCcEEE------------------
Confidence 346778888884 7776655 222 12 22347789999999999988874
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCee
Q 014237 236 DGVIMNDETVHQLCKQAVSQARAGADVV 263 (428)
Q Consensus 236 ~g~IdND~Tl~~Lak~Als~A~AGADiV 263 (428)
|.|-. .++|..+.+||||+|
T Consensus 157 -GNV~T-------~e~a~~Li~aGAD~v 176 (346)
T PRK05096 157 -GNVVT-------GEMVEELILSGADIV 176 (346)
T ss_pred -ecccC-------HHHHHHHHHcCCCEE
Confidence 32222 235566778999998
No 214
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=57.59 E-value=44 Score=33.22 Aligned_cols=83 Identities=24% Similarity=0.391 Sum_probs=51.9
Q ss_pred cccCCCCCChHHHHHHHHhchhcCCc-eEEe---cCCC---chHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCC
Q 014237 319 KTYQMNPANYREALVEAQADESEGAD-ILLV---KPGL---PYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMI 390 (428)
Q Consensus 319 ktYQmdpaN~~EAlrE~~lDi~EGAD-ilMV---KPal---~YLDII~~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~i 390 (428)
+.|.|++....|.++++ .+.|++ +.+| .|.. -|+++++.+|+.+. +.+.++ ..+|...+ +...|+.
T Consensus 32 ~~~~ls~eeI~~~~~~~---~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~-s~~e~~~~--~~~~g~~ 105 (309)
T TIGR00423 32 DAYVLSLEEILEKVKEA---VAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAF-SPMEVYFL--AKNEGLS 105 (309)
T ss_pred CcccCCHHHHHHHHHHH---HHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEec-CHHHHHHH--HHHcCCC
Confidence 45888776555555544 345754 3444 2321 26899999999873 666555 23454333 3356766
Q ss_pred chhhHHHHHHHHHHHhcccEee
Q 014237 391 DEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 391 D~~~~vlEsL~~~kRAGAd~Ii 412 (428)
+ -|.|..+|+||+|.+.
T Consensus 106 ~-----~e~l~~LkeAGl~~i~ 122 (309)
T TIGR00423 106 I-----EEVLKRLKKAGLDSMP 122 (309)
T ss_pred H-----HHHHHHHHHcCCCcCC
Confidence 5 3778889999999874
No 215
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=57.56 E-value=58 Score=30.17 Aligned_cols=104 Identities=16% Similarity=0.266 Sum_probs=68.7
Q ss_pred CChHHHhhhhcCCCCCCCcee-eEEEeeCC-C--Cc---c----cCCCCCceeec---hhhhHHHHHHHHHHcCCCeEEE
Q 014237 111 KSPAMRASFQETNLSPANFVY-PLFIHEGE-E--DT---P----IGAMPGCYRLG---WRHGLVQEVAKARDVGVNSVVL 176 (428)
Q Consensus 111 ~~~~~R~lv~Et~L~~~dLI~-PlFV~eg~-~--~~---~----I~SMPGv~r~s---~~~~l~~~v~~~~~~GI~sv~L 176 (428)
.+..+|.|++... .|+.| |.++.+.. . .. . =...|=+.+++ .+ +..+.++.+.+.|...|-|
T Consensus 11 ~~~~fR~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~-~~~~aa~~~~~aG~d~iel 86 (231)
T cd02801 11 TDLPFRLLCRRYG---ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPE-TLAEAAKIVEELGADGIDL 86 (231)
T ss_pred cCHHHHHHHHHHC---CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHH-HHHHHHHHHHhcCCCEEEE
Confidence 4678888888865 34444 65555443 1 11 0 02223233442 33 5778888888899999988
Q ss_pred -eecCCC--CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec
Q 014237 177 -FPKVPD--ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (428)
Q Consensus 177 -Fgvi~~--~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVc 220 (428)
+|. |. ..+|+.|+...+.-.++...++.+++..+ +-|..++.
T Consensus 87 n~g~-p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r 131 (231)
T cd02801 87 NMGC-PSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIR 131 (231)
T ss_pred eCCC-CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEe
Confidence 454 42 35788999888888889999999999887 55666654
No 216
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=57.47 E-value=44 Score=30.40 Aligned_cols=55 Identities=29% Similarity=0.337 Sum_probs=38.5
Q ss_pred hhcCCceEEe--------cCCCc---hHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHh
Q 014237 339 ESEGADILLV--------KPGLP---YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 406 (428)
Q Consensus 339 i~EGADilMV--------KPal~---YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRA 406 (428)
.+.|||++++ ||+.. =++.++.+++.+ ++||.| .|-|++ |.+..++.+
T Consensus 113 ~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a---------------~GGI~~-----~~~~~~~~~ 172 (196)
T TIGR00693 113 EAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVA---------------IGGITL-----ENAAEVLAA 172 (196)
T ss_pred hHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEE---------------ECCcCH-----HHHHHHHHc
Confidence 3579999985 44421 378899988876 499876 355654 556677788
Q ss_pred cccEeeh
Q 014237 407 GADIILT 413 (428)
Q Consensus 407 GAd~IiT 413 (428)
|+|.|..
T Consensus 173 G~~gva~ 179 (196)
T TIGR00693 173 GADGVAV 179 (196)
T ss_pred CCCEEEE
Confidence 9998763
No 217
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=57.24 E-value=16 Score=32.68 Aligned_cols=48 Identities=29% Similarity=0.410 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceeec
Q 014237 242 DETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMS 292 (428)
Q Consensus 242 D~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV---~aIR~aLD~~Gf~~v~IMS 292 (428)
|.|.+..++.|+ +.+||+|.=|.+|.... ..+.++|.+.|..++.||.
T Consensus 39 ~~s~e~~v~aa~---e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 39 FQTPEEIARQAV---EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVV 89 (132)
T ss_pred CCCHHHHHHHHH---HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 566777777775 67999999999998654 5666778888987777775
No 218
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=57.18 E-value=30 Score=33.92 Aligned_cols=119 Identities=22% Similarity=0.342 Sum_probs=80.5
Q ss_pred HHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeec-hhhhhccccccchh----hhhcCCCCCC---CccccCCCCC
Q 014237 255 QARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMS-YTAKYASSFYGPFR----EALDSNPRFG---DKKTYQMNPA 326 (428)
Q Consensus 255 ~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMS-YsaKyASafYGPFR----dAa~Sap~fg---DRktYQmdpa 326 (428)
.+..|+.++.|+ .|+.++|..-|.++++|++ |..--.-.+..=|. +.+... .|| |.+=.+++|.
T Consensus 97 ~~~~g~p~tt~~-------~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~-~~~~~~~~~ia~i~p~ 168 (239)
T TIGR02990 97 AAKPGTPVVTPS-------SAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT-CLGLTDDREMARISPD 168 (239)
T ss_pred hcCCCCCeeCHH-------HHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee-ccCCCCCceeeecCHH
Confidence 355689999885 6999999999999999886 43322222222222 111111 134 3456678999
Q ss_pred ChHHHHHHHHhchhcCCceEEe-cCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHH
Q 014237 327 NYREALVEAQADESEGADILLV-KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAG 384 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMV-KPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaA 384 (428)
...++++++. ..+||.|.+ ==+|.-+|||.++.+.++.||..=|.--=+.|++.+
T Consensus 169 ~i~~~~~~~~---~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~W~~Lr~~ 224 (239)
T TIGR02990 169 CIVEAALAAF---DPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATAWRCLRLC 224 (239)
T ss_pred HHHHHHHHhc---CCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHHHHHHHHc
Confidence 9889888883 468997665 456788999999999999999665554444444443
No 219
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=57.09 E-value=27 Score=34.29 Aligned_cols=55 Identities=27% Similarity=0.410 Sum_probs=38.8
Q ss_pred hhcCCceEEecC---CC--chHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 339 ESEGADILLVKP---GL--PYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 339 i~EGADilMVKP---al--~YLDII~~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
++.|||.|.|.. +. +=++.|+++++.++ +||.+ +|=+..-+-+.|.|. +|||.+-
T Consensus 158 ~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg---------------NGgI~s~eda~e~l~----~GAd~Vm 218 (231)
T TIGR00736 158 VDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG---------------NNSIDDIESAKEMLK----AGADFVS 218 (231)
T ss_pred HHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE---------------ECCcCCHHHHHHHHH----hCCCeEE
Confidence 578999999853 33 23899999999985 99876 444443344455553 6999874
No 220
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=57.04 E-value=64 Score=31.56 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014237 158 GLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L-Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~ 236 (428)
+..+.++.+.+.|...|-| |+. |. .+ ..|.+-...-.++.+-++.+|+.. ++-|+.-+- +.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~c-P~-~~-~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~--~~------------ 164 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISC-PN-VK-GGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLT--PN------------ 164 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCC-CC-CC-CCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeC--CC------------
Confidence 5888888889999999977 774 53 22 223333344467778899998876 444544432 10
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 014237 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (428)
Q Consensus 237 g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM 269 (428)
-+ .+.+.|-...++|||.|.-+.-.
T Consensus 165 ----~~----~~~~~a~~~~~~G~d~i~~~nt~ 189 (296)
T cd04740 165 ----VT----DIVEIARAAEEAGADGLTLINTL 189 (296)
T ss_pred ----ch----hHHHHHHHHHHcCCCEEEEECCC
Confidence 01 13344444568999987655433
No 221
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=56.75 E-value=27 Score=33.95 Aligned_cols=87 Identities=22% Similarity=0.185 Sum_probs=58.2
Q ss_pred CChHHHHHHHHhchhcCCceEEecCCCc---------------hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC--
Q 014237 326 ANYREALVEAQADESEGADILLVKPGLP---------------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK-- 388 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMVKPal~---------------YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G-- 388 (428)
.+.++++..+..-+++|||||=|=.... ...+|+.+++.+++|+..= |-....+++|.+.|
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSID--T~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVD--TFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CCcHHHHHHHHHhCCC
Confidence 3678999999999999999998765444 6788899998888887432 34456677777766
Q ss_pred CCchhhH--H-HHHHHHHHHhcccEeehh
Q 014237 389 MIDEQRV--M-MESLMCLRRAGADIILTY 414 (428)
Q Consensus 389 ~iD~~~~--v-lEsL~~~kRAGAd~IiTY 414 (428)
+|+.=.. . -|.+.-+++.|+-+|+..
T Consensus 99 iINdis~~~~~~~~~~l~~~~~~~vV~m~ 127 (258)
T cd00423 99 IINDVSGGRGDPEMAPLAAEYGAPVVLMH 127 (258)
T ss_pred EEEeCCCCCCChHHHHHHHHcCCCEEEEC
Confidence 1111000 0 223334566788887765
No 222
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=56.71 E-value=1.3e+02 Score=30.58 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=65.9
Q ss_pred eeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcc-----cCcCcCCCCCHHHHHHH
Q 014237 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPT-----GDEAYNDNGLVPRTIWL 205 (428)
Q Consensus 131 ~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~-----Gs~A~~~~g~v~rAIr~ 205 (428)
.||+|.-..+ ++ ++.+.++.+.+.|+..|.+++.++...-|-. ....+.-..+.+.+++.
T Consensus 164 iPv~vKl~p~--------------~~-~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~ 228 (325)
T cd04739 164 IPVAVKLSPF--------------FS-ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRW 228 (325)
T ss_pred CCEEEEcCCC--------------cc-CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHH
Confidence 4999996421 12 3677888889999999999987532111210 11123333444556665
Q ss_pred HHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCc------hHHHHH
Q 014237 206 LKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDG------RVGAIR 277 (428)
Q Consensus 206 iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPS--DMMDG------RV~aIR 277 (428)
+++..-.+ ++ -|+ -.|-|.| .+.|+.+-.+|||.|.=. =|.+| -+..|.
T Consensus 229 v~~v~~~~----~i-----------pIi-g~GGI~s-------~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~ 285 (325)
T cd04739 229 IAILSGRV----KA-----------SLA-ASGGVHD-------AEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLE 285 (325)
T ss_pred HHHHHccc----CC-----------CEE-EECCCCC-------HHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHH
Confidence 55443111 11 122 1244443 234555556899987432 23333 244566
Q ss_pred HHHHHCCCCCc
Q 014237 278 AALDAEGFQHV 288 (428)
Q Consensus 278 ~aLD~~Gf~~v 288 (428)
+.|+++||.++
T Consensus 286 ~~l~~~g~~~i 296 (325)
T cd04739 286 AWMEEHGYESV 296 (325)
T ss_pred HHHHHcCCCCH
Confidence 77888998663
No 223
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=56.52 E-value=20 Score=33.77 Aligned_cols=86 Identities=19% Similarity=0.277 Sum_probs=55.0
Q ss_pred Ccee--echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014237 149 GCYR--LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (428)
Q Consensus 149 Gv~r--~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTs 226 (428)
.++| ++.+ .+.+.++.+.+.|+..|.|.. ..|. ..|+. +.+-++.+++.+|++ +..-
T Consensus 137 ~~~~~~~~~~-~l~~~~~~~~~~g~~~i~l~D--------t~G~--~~P~~-v~~li~~l~~~~~~~---------~~~~ 195 (265)
T cd03174 137 DAFGCKTDPE-YVLEVAKALEEAGADEISLKD--------TVGL--ATPEE-VAELVKALREALPDV---------PLGL 195 (265)
T ss_pred eecCCCCCHH-HHHHHHHHHHHcCCCEEEech--------hcCC--cCHHH-HHHHHHHHHHhCCCC---------eEEE
Confidence 4556 7775 588888889999988877632 2332 33333 456788999999872 4456
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014237 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (428)
Q Consensus 227 hGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM 268 (428)
|+|+-. | .=..-++.-.++||++|--|=.
T Consensus 196 H~Hn~~----g---------la~an~laA~~aG~~~id~s~~ 224 (265)
T cd03174 196 HTHNTL----G---------LAVANSLAALEAGADRVDGSVN 224 (265)
T ss_pred EeCCCC----C---------hHHHHHHHHHHcCCCEEEeccc
Confidence 888521 2 1123456667899998855543
No 224
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=56.38 E-value=24 Score=35.29 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=72.1
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccchhh
Q 014237 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (428)
Q Consensus 236 ~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRd 307 (428)
+|.|| -+.++.|++ .+.++|+|-|-+.+-+ +=|...++.+.+..+ .+++||.-..
T Consensus 23 ~g~iD-~~~l~~lv~---~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-grvpvi~Gv~------------ 85 (309)
T cd00952 23 TDTVD-LDETARLVE---RLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA-GRVPVFVGAT------------ 85 (309)
T ss_pred CCCcC-HHHHHHHHH---HHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC-CCCCEEEEec------------
Confidence 46776 444444444 3455899988776542 346677777777765 5777775421
Q ss_pred hhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhC-CCCeEEEEech
Q 014237 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKY-PLPIAAYQVSG 376 (428)
Q Consensus 308 Aa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~-~lPvaaYqVSG 376 (428)
+ .|.+|+++.++.=.+-|||.+||=|=..| .|-.+.+.+.+ ++||..||.-+
T Consensus 86 ---~--------------~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 86 ---T--------------LNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred ---c--------------CCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 1 26778888777767779999999875322 44456777888 69999998854
No 225
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=56.18 E-value=1.8e+02 Score=29.38 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=82.5
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec
Q 014237 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (428)
Q Consensus 141 ~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVc 220 (428)
.++|.-++.+.+ +.. ++.+.++.+.++||+.|++-.==|+ .-|..+.. +.--...|+.||+...+. .-.=++
T Consensus 78 ~~~i~Hltc~d~-n~~-~i~~~l~~~~~~Gi~~ilaLrGDpp-~g~~~~~~----~~~s~dLv~lik~~~~~~-f~i~~A 149 (291)
T COG0685 78 IEPIPHLTCRDR-NRI-EIISILKGAAALGIRNILALRGDPP-AGDKPGGK----DLYSVDLVELIKKMRGGI-FDIGVA 149 (291)
T ss_pred CccceeecccCC-CHH-HHHHHHHHHHHhCCceEEEecCCCC-CCCCCCcc----ccCHHHHHHHHHHhcCCe-EEEEEE
Confidence 346677777777 664 6999999999999999988653121 12222221 445667999999887774 222345
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeec
Q 014237 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (428)
Q Consensus 221 Lc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~IMS 292 (428)
++|+ ||.- .++. +.-+..|.+ -.+||||.+=--=+-| -++..+++.+...|- +++|..
T Consensus 150 ~~Pe---~h~~--s~~~----~~d~~~lkr----Kv~aGAd~~iTQ~~fd~e~~~~~~~~~~~~g~-~~pI~~ 208 (291)
T COG0685 150 AYPE---GHPE--SKDV----KEDIKRLKR----KVDAGADFFITQFFFDVEAFERFAERVRAAGI-DIPIIP 208 (291)
T ss_pred eCCC---CCcc--chhh----HHHHHHHHH----HHhcchHHHHHHHccCHHHHHHHHHHHHhcCC-CCCeee
Confidence 6666 3432 2111 222333332 2349999888777777 467889999999885 655444
No 226
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=56.04 E-value=62 Score=29.28 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=55.7
Q ss_pred cCCCCCChHHHHHHHHhchhcCCceEEe-------cCCCch-HHHHHHHHhhCCCC----eEEEEechHHHHHHHHHHCC
Q 014237 321 YQMNPANYREALVEAQADESEGADILLV-------KPGLPY-LDVIRLLRDKYPLP----IAAYQVSGEYSMIKAGGALK 388 (428)
Q Consensus 321 YQmdpaN~~EAlrE~~lDi~EGADilMV-------KPal~Y-LDII~~vk~~~~lP----vaaYqVSGEYaMIkaAa~~G 388 (428)
+-+|+.+..++++++. +-|+|.|-+ -|..++ +++++++++.++.| +..|+......++..+...|
T Consensus 7 ~~~d~~~~~~~~~~~~---~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dg 83 (211)
T cd00429 7 LSADFANLGEELKRLE---EAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADI 83 (211)
T ss_pred ecCCHHHHHHHHHHHH---HcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCE
Confidence 5578888888777765 568999865 344544 68999999876444 44444323333333222233
Q ss_pred --CCch-hhHHHHHHHHHHHhcccEeehh
Q 014237 389 --MIDE-QRVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 389 --~iD~-~~~vlEsL~~~kRAGAd~IiTY 414 (428)
.-++ .....|.+..++..|..++++-
T Consensus 84 v~vh~~~~~~~~~~~~~~~~~~~~~g~~~ 112 (211)
T cd00429 84 ITFHAEATDHLHRTIQLIKELGMKAGVAL 112 (211)
T ss_pred EEECccchhhHHHHHHHHHHCCCeEEEEe
Confidence 1232 2355677778888888877755
No 227
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=55.81 E-value=21 Score=36.64 Aligned_cols=54 Identities=13% Similarity=0.272 Sum_probs=40.7
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeE
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~ 214 (428)
+.++.+ ++.++++.+.+.|++.|.|.|--++..+ +-.-+.++++.||+.||++.
T Consensus 101 ~~Ls~e-EI~~~a~~~~~~Gv~~i~lvgGe~p~~~---------~~e~l~eii~~Ik~~~p~i~ 154 (366)
T TIGR02351 101 KKLNEE-EIEREIEAIKKSGFKEILLVTGESEKAA---------GVEYIAEAIKLAREYFSSLA 154 (366)
T ss_pred CcCCHH-HHHHHHHHHHhCCCCEEEEeeCCCCCCC---------CHHHHHHHHHHHHHhCCccc
Confidence 677886 6999999999999999998742222111 11357889999999999765
No 228
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=55.65 E-value=42 Score=34.63 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=36.2
Q ss_pred HHHHHHHHhchhcCC--ceEEecCCCch----HHHHHHHHhhCC-CCeEEEEec
Q 014237 329 REALVEAQADESEGA--DILLVKPGLPY----LDVIRLLRDKYP-LPIAAYQVS 375 (428)
Q Consensus 329 ~EAlrE~~lDi~EGA--DilMVKPal~Y----LDII~~vk~~~~-lPvaaYqVS 375 (428)
.|.+.++..=++.|+ |+|-+=.+..+ .++|+.+|++++ +||.+=+|.
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~ 149 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG 149 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 345666766677755 99999777665 678999999996 999987764
No 229
>PLN00191 enolase
Probab=55.45 E-value=55 Score=35.24 Aligned_cols=125 Identities=14% Similarity=0.188 Sum_probs=80.2
Q ss_pred HHHHHHHHHHCCCC-Cceeechhhhh-ccccccchhhhhcCCCCCCCccccCCCC----------CChHHHHHHHHhchh
Q 014237 273 VGAIRAALDAEGFQ-HVSIMSYTAKY-ASSFYGPFREALDSNPRFGDKKTYQMNP----------ANYREALVEAQADES 340 (428)
Q Consensus 273 V~aIR~aLD~~Gf~-~v~IMSYsaKy-ASafYGPFRdAa~Sap~fgDRktYQmdp----------aN~~EAlrE~~lDi~ 340 (428)
+..|++|.++.||+ +|.| +--. ||.||.. ...|.++. -+.+|+ .+...++.
T Consensus 246 l~ll~eAi~~ag~~~~i~i---~lD~Aase~~~~-------------~~~Y~~~~~~~~~~~~~~~s~~e~-i~~~~~L~ 308 (457)
T PLN00191 246 LELLKEAIEKAGYTGKIKI---GMDVAASEFYTK-------------DKKYDLDFKEENNDGSNKKSGDEL-IDLYKEFV 308 (457)
T ss_pred HHHHHHHHHHcCCCCceEE---Eeehhhhhhccc-------------CCceEeeccccCCCcccccCHHHH-HHHHHHHh
Confidence 46678888889996 4443 3333 4567731 12354431 255554 45666777
Q ss_pred cCCceEEecCCCch--HHHHHHHHhhCCCCeEEEEec-hHHHHHHHHHHCCCCch-------hhHHHHHHHH---HHHhc
Q 014237 341 EGADILLVKPGLPY--LDVIRLLRDKYPLPIAAYQVS-GEYSMIKAGGALKMIDE-------QRVMMESLMC---LRRAG 407 (428)
Q Consensus 341 EGADilMVKPal~Y--LDII~~vk~~~~lPvaaYqVS-GEYaMIkaAa~~G~iD~-------~~~vlEsL~~---~kRAG 407 (428)
|.-+++.+.=-++. +|=.++++++.++|++.-... -....++.+.+.|+.|- --.+.|++.. .+.+|
T Consensus 309 ~~y~I~~IEDPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G 388 (457)
T PLN00191 309 SDYPIVSIEDPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAG 388 (457)
T ss_pred hcCCcEEEECCCCcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCC
Confidence 77888777766655 556788989999999996654 44566777777777763 1235555554 47778
Q ss_pred ccEeehh
Q 014237 408 ADIILTY 414 (428)
Q Consensus 408 Ad~IiTY 414 (428)
-.+++..
T Consensus 389 ~~~~ish 395 (457)
T PLN00191 389 WGVMTSH 395 (457)
T ss_pred CEEEeCC
Confidence 8888753
No 230
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=55.42 E-value=15 Score=32.58 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=38.3
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--CCceeechhhhhccccccchhh
Q 014237 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFRE 307 (428)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf--~~v~IMSYsaKyASafYGPFRd 307 (428)
+|=|..+..|+++.|-+.|.++|| ...-.+.-+...|..||..+++
T Consensus 7 iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~ 54 (134)
T PRK00668 7 IIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKE 54 (134)
T ss_pred EECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcC
Confidence 466777888999999999999999 5667788888899999975553
No 231
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=54.97 E-value=26 Score=35.42 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=56.6
Q ss_pred chhhhhcCCCCC-CCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhC-CCCeEEEEechHHHHH
Q 014237 304 PFREALDSNPRF-GDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMI 381 (428)
Q Consensus 304 PFRdAa~Sap~f-gDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~-~lPvaaYqVSGEYaMI 381 (428)
-+++|+..+-++ ..++ -++...|.+||... ++.|||+||.- .+..=|+.+.++..- .-|=+.-.+|
T Consensus 174 ~i~~av~~~r~~~~~~k-IeVEv~tleea~ea----~~~GaDiI~lD-n~~~e~l~~~v~~l~~~~~~~~leas------ 241 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERK-ITVEADTIEQALTV----LQASPDILQLD-KFTPQQLHHLHERLKFFDHIPTLAAA------ 241 (277)
T ss_pred cHHHHHHHHHHhCCCCC-EEEECCCHHHHHHH----HHcCcCEEEEC-CCCHHHHHHHHHHHhccCCCEEEEEE------
Confidence 566666554332 2333 77788788887654 36899999998 577767666655421 1232334444
Q ss_pred HHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 014237 382 KAGGALKMIDEQRVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 382 kaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTY 414 (428)
|-|+ .|.+..+...|+|+|+|-
T Consensus 242 ------GGI~-----~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 242 ------GGIN-----PENIADYIEAGIDLFITS 263 (277)
T ss_pred ------CCCC-----HHHHHHHHhcCCCEEEeC
Confidence 4566 456678899999999874
No 232
>CHL00148 orf27 Ycf27; Reviewed
Probab=54.52 E-value=1.4e+02 Score=26.63 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=48.0
Q ss_pred ChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 014237 327 NYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
+..+++.... .+..|++++- |.+.-+++++.+++...+|+....-.+++.....+.+.|..|
T Consensus 38 ~~~~~l~~~~---~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~ 102 (240)
T CHL00148 38 DGEEALKLFR---KEQPDLVILDVMMPKLDGYGVCQEIRKESDVPIIMLTALGDVSDRITGLELGADD 102 (240)
T ss_pred CHHHHHHHHH---hcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEECCCCHHhHHHHHHCCCCE
Confidence 5566665443 3457999985 566778999999987789999988888888888888888765
No 233
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=54.51 E-value=71 Score=32.57 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCC
Q 014237 159 LVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgv---------i~--~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YTs 226 (428)
.++.++.+.+.|...|-|-+- -| +..+|+.|..--|.--++...++.||++.+ ++.|..=+..++|-.
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 445566778899999988661 13 234588887655666778889999999984 777777776665522
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcC-CCeecCC
Q 014237 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAG-ADVVSPS 266 (428)
Q Consensus 227 hGHcGil~~~g~IdND~Tl~~Lak~Als~A~AG-ADiVAPS 266 (428)
+| ++-|+++ +.+-.+.++| +|+|.-|
T Consensus 223 ---------~G-~~~~e~~----~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 223 ---------GG-LSPDEAL----EIAARLAAEGLIDYVNVS 249 (343)
T ss_pred ---------CC-CCHHHHH----HHHHHHHhcCCCCEEEeC
Confidence 22 3345665 3355567898 8998765
No 234
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=54.51 E-value=41 Score=33.50 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=49.4
Q ss_pred cCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCCchhhHHHH
Q 014237 321 YQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMME 398 (428)
Q Consensus 321 YQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~--~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlE 398 (428)
-..-..|.+|+.... +.|||+||+=|- ++|-++++.+.. ++|+.| .|-|+.+
T Consensus 185 Igvev~s~eea~~A~----~~gaDyI~ld~~--~~e~l~~~~~~~~~~ipi~A---------------iGGI~~~----- 238 (268)
T cd01572 185 IEVEVETLEQLKEAL----EAGADIIMLDNM--SPEELREAVALLKGRVLLEA---------------SGGITLE----- 238 (268)
T ss_pred EEEEECCHHHHHHHH----HcCCCEEEECCc--CHHHHHHHHHHcCCCCcEEE---------------ECCCCHH-----
Confidence 445556777765553 689999999774 789999988866 488765 5667754
Q ss_pred HHHHHHHhcccEeeh
Q 014237 399 SLMCLRRAGADIILT 413 (428)
Q Consensus 399 sL~~~kRAGAd~IiT 413 (428)
.+..+..+|+|.|-+
T Consensus 239 ni~~~a~~Gvd~Iav 253 (268)
T cd01572 239 NIRAYAETGVDYISV 253 (268)
T ss_pred HHHHHHHcCCCEEEE
Confidence 456778899999865
No 235
>PRK02227 hypothetical protein; Provisional
Probab=54.47 E-value=52 Score=32.90 Aligned_cols=46 Identities=37% Similarity=0.446 Sum_probs=36.7
Q ss_pred CCCCCChHHHHHHHHhchhcCCceEEec-CC-----CchHHHHHHHHhhCC--CCeEE
Q 014237 322 QMNPANYREALVEAQADESEGADILLVK-PG-----LPYLDVIRLLRDKYP--LPIAA 371 (428)
Q Consensus 322 QmdpaN~~EAlrE~~lDi~EGADilMVK-Pa-----l~YLDII~~vk~~~~--lPvaa 371 (428)
.+.|.|.+||+.. ++.|||||=|| |. -.+.++|+++++..+ .||.|
T Consensus 4 LvSvr~~eEA~~A----l~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSA 57 (238)
T PRK02227 4 LVSVRNLEEALEA----LAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSA 57 (238)
T ss_pred eeccCCHHHHHHH----HhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCcee
Confidence 4568899998766 46999999998 43 368999999999885 77765
No 236
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.43 E-value=24 Score=34.07 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=46.6
Q ss_pred eeeEEEeeCCC---CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHH
Q 014237 130 VYPLFIHEGEE---DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLL 206 (428)
Q Consensus 130 I~PlFV~eg~~---~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~i 206 (428)
+-|-|..|-.+ ...|..+||++ -..|+..++++|.+.|-|||. .. .|. +.-|+.|
T Consensus 81 vSP~~~~~vi~~a~~~~i~~iPG~~-------TptEi~~A~~~Ga~~vK~FPa-~~-----~GG---------~~yikal 138 (201)
T PRK06015 81 VSPGTTQELLAAANDSDVPLLPGAA-------TPSEVMALREEGYTVLKFFPA-EQ-----AGG---------AAFLKAL 138 (201)
T ss_pred ECCCCCHHHHHHHHHcCCCEeCCCC-------CHHHHHHHHHCCCCEEEECCc-hh-----hCC---------HHHHHHH
Confidence 44554443222 45899999992 477899999999999999994 11 111 3568999
Q ss_pred HHHCCCeEEEe
Q 014237 207 KDRYPDLVIYT 217 (428)
Q Consensus 207 K~~~Pdl~Vit 217 (428)
|.-||++-+|.
T Consensus 139 ~~plp~~~l~p 149 (201)
T PRK06015 139 SSPLAGTFFCP 149 (201)
T ss_pred HhhCCCCcEEe
Confidence 99999876653
No 237
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=54.21 E-value=18 Score=33.66 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCCCChHHHHHHHHhchhcCCceEEecCCCch-----HHHHHHHHhhCCCC
Q 014237 323 MNPANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKYPLP 368 (428)
Q Consensus 323 mdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-----LDII~~vk~~~~lP 368 (428)
+|..+.+||++=++ .+ .+- +..|||+++. +++|+.+|+.+.+|
T Consensus 10 lD~~~~~~~~~~~~-~~-~~~-~~~vk~g~~l~~~~G~~~v~~ir~~~~i~ 57 (215)
T PRK13813 10 LDVTDRERALKIAE-EL-DDY-VDAIKVGWPLVLASGLGIIEELKRYAPVI 57 (215)
T ss_pred eCCCCHHHHHHHHH-hc-ccc-CCEEEEcHHHHHhhCHHHHHHHHhcCCEE
Confidence 57788888877443 22 222 2489999865 68899999877444
No 238
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=54.03 E-value=64 Score=32.74 Aligned_cols=92 Identities=24% Similarity=0.256 Sum_probs=56.6
Q ss_pred cccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEec---------CCC-----chHHHHHHHHhhCC
Q 014237 301 FYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVK---------PGL-----PYLDVIRLLRDKYP 366 (428)
Q Consensus 301 fYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK---------Pal-----~YLDII~~vk~~~~ 366 (428)
-|...|+...+.|-+++--..|..+.+.++ ++++...+ +||.+=+. |.. -|+|.|+.+++.++
T Consensus 102 ~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~-~~~~i~~~--~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~ 178 (326)
T cd02811 102 SFTVVREAPPNGPLIANLGAVQLNGYGVEE-ARRAVEMI--EADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALS 178 (326)
T ss_pred HHHHHHHhCCCceEEeecCccccCCCCHHH-HHHHHHhc--CCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 344556666566666665566665434333 44444444 46665443 221 25699999999999
Q ss_pred CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 367 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 367 lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
+||.+=. +| .|. ..|....+.++|+|.|.
T Consensus 179 vPVivK~-~g----------~g~------s~~~a~~l~~~Gvd~I~ 207 (326)
T cd02811 179 VPVIVKE-VG----------FGI------SRETAKRLADAGVKAID 207 (326)
T ss_pred CCEEEEe-cC----------CCC------CHHHHHHHHHcCCCEEE
Confidence 9999543 23 121 14667788889999998
No 239
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=53.79 E-value=2e+02 Score=27.26 Aligned_cols=160 Identities=21% Similarity=0.196 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
+..+.++.+.+.|+..+.++.. .. +..+ .+.-...++.|++... +-|+ -+|
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~-~~---~~~~------~~~~~~~i~~i~~~~~-~pv~------------------~~G 78 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDI-TA---SSEG------RETMLDVVERVAEEVF-IPLT------------------VGG 78 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcC-Cc---cccc------CcccHHHHHHHHHhCC-CCEE------------------EeC
Confidence 3788899999999999999885 32 2111 2555678888888752 2222 136
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccch---hhhhcCCCC
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF---REALDSNPR 314 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPF---RdAa~Sap~ 314 (428)
-|.+-+.++.+.+ .|||.|.=.-..-..-..+++.++.-| ++-.+.|=.+| .++. +=+.
T Consensus 79 GI~s~~d~~~~l~-------~G~~~v~ig~~~~~~p~~~~~i~~~~~-~~~i~~~ld~k-----~~~~~~~~v~~----- 140 (243)
T cd04731 79 GIRSLEDARRLLR-------AGADKVSINSAAVENPELIREIAKRFG-SQCVVVSIDAK-----RRGDGGYEVYT----- 140 (243)
T ss_pred CCCCHHHHHHHHH-------cCCceEEECchhhhChHHHHHHHHHcC-CCCEEEEEEee-----ecCCCceEEEE-----
Confidence 6666666666544 588866544333223345555555432 22233333332 0100 0001
Q ss_pred CCCccccCCCCCChHHHHHHHHhchhcCCceEEe--------cCCCchHHHHHHHHhhCCCCeEE
Q 014237 315 FGDKKTYQMNPANYREALVEAQADESEGADILLV--------KPGLPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 315 fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMV--------KPal~YLDII~~vk~~~~lPvaa 371 (428)
|-.+....-+..+-.+++ .+.|+|.|.| +++ ..++.++++++..++||.+
T Consensus 141 ---~~~~~~~~~~~~~~~~~l---~~~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~~~pvia 198 (243)
T cd04731 141 ---HGGRKPTGLDAVEWAKEV---EELGAGEILLTSMDRDGTKKG-YDLELIRAVSSAVNIPVIA 198 (243)
T ss_pred ---cCCceecCCCHHHHHHHH---HHCCCCEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCCEEE
Confidence 111222222333333333 4679998888 333 5799999999999999876
No 240
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=53.51 E-value=1e+02 Score=32.94 Aligned_cols=93 Identities=27% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014237 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (428)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~I 239 (428)
.+.++.+++.|+. ++. ++..+-...+ +...|+.||+.+|++.||+ |.|
T Consensus 230 ~e~a~~L~~agvd-viv---vD~a~g~~~~---------vl~~i~~i~~~~p~~~vi~-------------------g~v 277 (486)
T PRK05567 230 EERAEALVEAGVD-VLV---VDTAHGHSEG---------VLDRVREIKAKYPDVQIIA-------------------GNV 277 (486)
T ss_pred HHHHHHHHHhCCC-EEE---EECCCCcchh---------HHHHHHHHHhhCCCCCEEE-------------------ecc
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------------hHHHHHHHHHHCCCCCceeec
Q 014237 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------------RVGAIRAALDAEGFQHVSIMS 292 (428)
Q Consensus 240 dND~Tl~~Lak~Als~A~AGADiVAPSDMMDG--------------RV~aIR~aLD~~Gf~~v~IMS 292 (428)
.+-++...|. ++|||+|- ..+--| +..+|.+..+...-.+++|++
T Consensus 278 ~t~e~a~~l~-------~aGad~i~-vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~via 336 (486)
T PRK05567 278 ATAEAARALI-------EAGADAVK-VGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIA 336 (486)
T ss_pred CCHHHHHHHH-------HcCCCEEE-ECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEE
No 241
>PRK01362 putative translaldolase; Provisional
Probab=53.39 E-value=18 Score=35.00 Aligned_cols=79 Identities=34% Similarity=0.417 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHcCCCeecCC-CCC-----Cc--hHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCC
Q 014237 244 TVHQLCKQAVSQARAGADVVSPS-DMM-----DG--RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315 (428)
Q Consensus 244 Tl~~Lak~Als~A~AGADiVAPS-DMM-----DG--RV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~f 315 (428)
|+-.-.+||+.-|+|||+.|||= +-| || .|..|++.++.+|+ ++-||+=|.|
T Consensus 107 T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~-~tkilaAS~r------------------- 166 (214)
T PRK01362 107 TLIFSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGF-DTEIIAASVR------------------- 166 (214)
T ss_pred eeecCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCC-CcEEEEeecC-------------------
Confidence 33334679999999999999992 111 22 36678888888885 6777765544
Q ss_pred CCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHH
Q 014237 316 GDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLR 362 (428)
Q Consensus 316 gDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk 362 (428)
|..+.+..+ ..|+|.+-+-| ||++++.
T Consensus 167 -----------~~~~v~~~~----~~G~d~iTi~~-----~vl~~l~ 193 (214)
T PRK01362 167 -----------HPMHVLEAA----LAGADIATIPY-----KVIKQLF 193 (214)
T ss_pred -----------CHHHHHHHH----HcCCCEEecCH-----HHHHHHH
Confidence 555555443 35999888764 5666653
No 242
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=52.94 E-value=2.4e+02 Score=27.84 Aligned_cols=109 Identities=18% Similarity=0.300 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-----HH-------------HHHHHHHCCCeEEEeee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-----RT-------------IWLLKDRYPDLVIYTDV 219 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~-----rA-------------Ir~iK~~~Pdl~VitDV 219 (428)
...+.++.+.+.|+.-+=| |+ | ..|+.+ ||++. || ++.||+..+++-++
T Consensus 25 ~~~~~~~~l~~~Gad~iEl-Gi-P--fsDP~a------DGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv--- 91 (256)
T TIGR00262 25 TSLEIIKTLIEAGADALEL-GV-P--FSDPLA------DGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG--- 91 (256)
T ss_pred HHHHHHHHHHHcCCCEEEE-CC-C--CCCCCC------cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE---
Confidence 4678888999999988877 74 6 356543 46654 22 45555443443222
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhh
Q 014237 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (428)
Q Consensus 220 cLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsa 295 (428)
+-.| .+ -|- .--++.. .-..+++|+|.|---|.-.-....+++.+.++|+.-+.+++-.+
T Consensus 92 -~m~Y--------~N---pi~-~~G~e~f---~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 92 -LLTY--------YN---LIF-RKGVEEF---YAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred -EEEe--------cc---HHh-hhhHHHH---HHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 1112 11 000 0111222 33457899997666677767888888888888887777776544
No 243
>PRK12383 putative mutase; Provisional
Probab=52.78 E-value=25 Score=37.41 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=51.3
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc---CcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014237 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE---AYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (428)
Q Consensus 154 s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~---A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHc 230 (428)
+++.. ......+.+.|++.+.+ |.+-+-..-+.++. +.+.+..+.++++++|+..++++.+==+.+| ..||.
T Consensus 229 ~~~p~-~~v~~~l~~~G~~v~~V-GKi~Di~s~~G~t~~~~~~~t~~~~~~~l~aL~~~~~dlvfvnl~~~D---~~GH~ 303 (406)
T PRK12383 229 GVDPK-VQVPQKLYEAGVPVVLV-GKVADIVNNPYGVSWQNLVDTQRVMDITLDEFNTHPTAFICTNIQETD---LAGHA 303 (406)
T ss_pred CCCCc-chhhhHHHHcCCCEEEE-EEhHHeeccCCcccccccCCHHHHHHHHHHHHhcCCCCEEEEeccCCc---ccccc
Confidence 56554 55666788899998888 76543222333444 4566788999999999887887766555566 45887
Q ss_pred eee
Q 014237 231 GIV 233 (428)
Q Consensus 231 Gil 233 (428)
+-+
T Consensus 304 ~d~ 306 (406)
T PRK12383 304 EDV 306 (406)
T ss_pred CCH
Confidence 755
No 244
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=52.78 E-value=1.6e+02 Score=30.11 Aligned_cols=129 Identities=20% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCee--------------cC---------CCCCCchHHHHHHHHHHCCCCCceeechhhhhc
Q 014237 242 DETVHQLCKQAVSQARAGADVV--------------SP---------SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYA 298 (428)
Q Consensus 242 D~Tl~~Lak~Als~A~AGADiV--------------AP---------SDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyA 298 (428)
++.++..++.|....+||.|.| +| -+-.++|..-+++.+++-- ..+ =..-..|..
T Consensus 138 ~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir-~~~-~~~v~vRis 215 (337)
T PRK13523 138 KETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVK-EVW-DGPLFVRIS 215 (337)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHH-Hhc-CCCeEEEec
Q ss_pred cccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-----------HHHHHHHHhhCCC
Q 014237 299 SSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-----------LDVIRLLRDKYPL 367 (428)
Q Consensus 299 SafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-----------LDII~~vk~~~~l 367 (428)
..-|.+ +--..+|++.=+..=.+.|.|+|-|--+..+ ++.++.+|+..++
T Consensus 216 ~~d~~~-------------------~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~i 276 (337)
T PRK13523 216 ASDYHP-------------------GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANI 276 (337)
T ss_pred ccccCC-------------------CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCC
Q ss_pred CeEEEEechHHHHHHHHHHCCCCc
Q 014237 368 PIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 368 PvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
||.+=.==-...+...+.+.|+.|
T Consensus 277 pVi~~G~i~~~~~a~~~l~~g~~D 300 (337)
T PRK13523 277 ATGAVGLITSGAQAEEILQNNRAD 300 (337)
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCC
No 245
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=52.01 E-value=33 Score=35.86 Aligned_cols=54 Identities=28% Similarity=0.524 Sum_probs=39.6
Q ss_pred hhcCCceEEecCCCch----HHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 339 ESEGADILLVKPGLPY----LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 339 i~EGADilMVKPal~Y----LDII~~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
++.|+|+|.+-=+--| +|.|+.+|+.++ +||.+=|| .+ .|....+.+||||.|.
T Consensus 117 ~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV---------------~T-----~e~a~~L~~aGad~vk 175 (352)
T PF00478_consen 117 VEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNV---------------VT-----YEGAKDLIDAGADAVK 175 (352)
T ss_dssp HHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE----------------S-----HHHHHHHHHTT-SEEE
T ss_pred HHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEeccc---------------CC-----HHHHHHHHHcCCCEEE
Confidence 4579999999877665 779999999996 99999998 12 3344457788999875
No 246
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=51.90 E-value=20 Score=32.49 Aligned_cols=46 Identities=24% Similarity=0.438 Sum_probs=36.1
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--CCceeechhhhhccccccchhh
Q 014237 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFRE 307 (428)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf--~~v~IMSYsaKyASafYGPFRd 307 (428)
+|=|..+..|.+|.|-+.+.++|| ...-.+-.+...|+.||..+++
T Consensus 7 iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~ 54 (140)
T PRK14541 7 ILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRE 54 (140)
T ss_pred EECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcC
Confidence 456777778999999999999999 4555677777888899965443
No 247
>PRK07475 hypothetical protein; Provisional
Probab=51.76 E-value=1.2e+02 Score=29.50 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCC--------------------CCCchHHHHHHHHHHCCCCCceeechhhhhccccc
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSD--------------------MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSD--------------------MMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafY 302 (428)
.-++.+.+.+-.+.++|||.|+=+. |..-.|.++++.+ .+.++|+|++..+ +.+|
T Consensus 62 ~~~~~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~--~~~~kIGILtt~~---t~l~ 136 (245)
T PRK07475 62 SLLDAFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVATSSLLQVPLIQALL--PAGQKVGILTADA---SSLT 136 (245)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhc--cCCCeEEEEeCCc---hhhh
Confidence 3577888889999999999887654 1111233333222 2457899998744 4688
Q ss_pred cchhhhhcCC------CCCCCcc-------ccC----CCCCChHHHHHHHHhch---hcCCceEEecCCCchHHHHHHHH
Q 014237 303 GPFREALDSN------PRFGDKK-------TYQ----MNPANYREALVEAQADE---SEGADILLVKPGLPYLDVIRLLR 362 (428)
Q Consensus 303 GPFRdAa~Sa------p~fgDRk-------tYQ----mdpaN~~EAlrE~~lDi---~EGADilMVKPal~YLDII~~vk 362 (428)
.-|=++++-. ...|... -|. .|....++.+.++...+ ..|+|.|+.-=. -.-.+...+.
T Consensus 137 ~~~l~~~Gi~~~~~~~~~~g~e~~~~~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~daIvL~CT-eLp~~~~~le 215 (245)
T PRK07475 137 PAHLLAVGVPPDTSSLPIAGLEEGGEFRRNILENRGELDNEAAEQEVVAAARALLERHPDIGAIVLECT-NMPPYAAAIQ 215 (245)
T ss_pred HHHHHhCCCCCCCccccccCcccchHHHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCCCEEEEcCc-ChHHHHHHHH
Confidence 7776666643 1222111 110 12222244566666655 349999887522 2224456666
Q ss_pred hhCCCCeEEEE
Q 014237 363 DKYPLPIAAYQ 373 (428)
Q Consensus 363 ~~~~lPvaaYq 373 (428)
+.+++||+-.+
T Consensus 216 ~~~glPViDs~ 226 (245)
T PRK07475 216 RATGLPVFDIV 226 (245)
T ss_pred HhcCCCEEeHH
Confidence 77889986543
No 248
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=51.75 E-value=29 Score=32.49 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=80.1
Q ss_pred CeEEEeeecccCCCCCCcceeecCCCccccHHHHH-----HHHHHHHHHHHcCCCeecCCCCCCchHH-HHHHHHHHCCC
Q 014237 212 DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVH-----QLCKQAVSQARAGADVVSPSDMMDGRVG-AIRAALDAEGF 285 (428)
Q Consensus 212 dl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~-----~Lak~Als~A~AGADiVAPSDMMDGRV~-aIR~aLD~~Gf 285 (428)
|++++-++++|.+..--| +-..|...+-.+.. --...|+..++-|.++.-=+-+-|..-+ .|++.|.++|-
T Consensus 1 ~v~~iG~~~~D~~~~v~~---~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi 77 (279)
T cd01942 1 DVAVVGHLNYDIILKVES---FPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGV 77 (279)
T ss_pred CEEEEecceeeeEeeccc---CCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCC
Confidence 688999999998742111 00011111111111 1234677778889988776667777775 89999999997
Q ss_pred CCceee-chhhhhccccccchhhhhcCCCCCCCccccCCCCCChHH-HHHHHHhchhcCCceEEecCCCchHHHHHHHHh
Q 014237 286 QHVSIM-SYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYRE-ALVEAQADESEGADILLVKPGLPYLDVIRLLRD 363 (428)
Q Consensus 286 ~~v~IM-SYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~E-AlrE~~lDi~EGADilMVKPal~YLDII~~vk~ 363 (428)
.-..|- .-..+...+++- .+. -|.|..| .+++...+ -..+ ..+.-+.+|++.+=-...++.+++..++
T Consensus 78 ~~~~~~~~~~~~t~~~~~~--~~~------~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (279)
T cd01942 78 DTSHVRVVDEDSTGVAFIL--TDG------DDNQIAY-FYPGAMDELEPND-EADPDGLADIVHLSSGPGLIELARELAA 147 (279)
T ss_pred CccceEEcCCCCcceEEEE--EcC------CCCEEEE-ecCCcccccccCC-chhhhcccCEEEeCCchHHHHHHHHHHH
Confidence 332231 111222223332 221 1333333 23322111 1111 2344588999988655456777777765
Q ss_pred hCCCCeEEEEechHH
Q 014237 364 KYPLPIAAYQVSGEY 378 (428)
Q Consensus 364 ~~~lPvaaYqVSGEY 378 (428)
+ +.|++ +.+++.+
T Consensus 148 ~-g~~v~-~D~~~~~ 160 (279)
T cd01942 148 G-GITVS-FDPGQEL 160 (279)
T ss_pred c-CCeEE-Ecchhhh
Confidence 3 56654 5676654
No 249
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=51.57 E-value=35 Score=33.40 Aligned_cols=106 Identities=24% Similarity=0.270 Sum_probs=63.4
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccchh
Q 014237 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (428)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFR 306 (428)
+||.|| -+.++.+++ -+.+.|+|-|.+.+-+ +=|...++.+.+..+ .+++|+.-..
T Consensus 15 ~dg~iD-~~~l~~~i~---~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~-~~~~vi~gv~----------- 78 (292)
T PRK03170 15 EDGSVD-FAALRKLVD---YLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN-GRVPVIAGTG----------- 78 (292)
T ss_pred CCCCcC-HHHHHHHHH---HHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC-CCCcEEeecC-----------
Confidence 445665 333444433 4556899988765443 235555555555543 3455553211
Q ss_pred hhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEe
Q 014237 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 374 (428)
Q Consensus 307 dAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 374 (428)
..|.+|+++.+..=.+=|||.+|+=|-..| .+-.+++.+.+++|+.-||.
T Consensus 79 ------------------~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~ 135 (292)
T PRK03170 79 ------------------SNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNV 135 (292)
T ss_pred ------------------CchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 125577777776666679999999665322 23344566778899999984
No 250
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=51.48 E-value=77 Score=32.26 Aligned_cols=46 Identities=22% Similarity=0.490 Sum_probs=33.3
Q ss_pred HHHHHHHHhchhcCCceEEecCC----CchHHHHHHHHhhCC-CCeEEEEe
Q 014237 329 REALVEAQADESEGADILLVKPG----LPYLDVIRLLRDKYP-LPIAAYQV 374 (428)
Q Consensus 329 ~EAlrE~~lDi~EGADilMVKPa----l~YLDII~~vk~~~~-lPvaaYqV 374 (428)
.+....+..-+++|+|+|.|=-+ -..+|+|+.+|+.++ +||.+=+|
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v 143 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNV 143 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCC
Confidence 34455666667899999987432 235899999999985 99987333
No 251
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=51.43 E-value=1.4e+02 Score=28.19 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=66.0
Q ss_pred CChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc---h---hhH
Q 014237 326 ANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID---E---QRV 395 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD---~---~~~ 395 (428)
.|..|++..+ .+...|+++.= |++.-+|+++.+++++ +.++..+-...+.+.+..|.+.|.-- . ...
T Consensus 33 ~~~~~~l~~~---~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~ 109 (211)
T COG2197 33 SNGEEALDLA---RELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEE 109 (211)
T ss_pred CCHHHHHHHh---hhcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHH
Confidence 3567776652 45677888776 8888999999999877 58999999999999999988887532 1 234
Q ss_pred HHHHHHHHHHhcccEeehhcHHHHHHHHh
Q 014237 396 MMESLMCLRRAGADIILTYFALQAARCLC 424 (428)
Q Consensus 396 vlEsL~~~kRAGAd~IiTYfA~e~a~wL~ 424 (428)
+.|++.+...-| +||.+++++-+.
T Consensus 110 l~~ai~~v~~G~-----~~~~~~~~~~~~ 133 (211)
T COG2197 110 LVEAIRAVAAGG-----TYLPPDIARKLA 133 (211)
T ss_pred HHHHHHHHHCCC-----eEeCHHHHHHHH
Confidence 555555554433 788887776543
No 252
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=51.41 E-value=24 Score=35.37 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=41.2
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014237 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (428)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vi 216 (428)
-|+++.+ +++++++++.+.|++.|.|-|-.++. -+...+...++.||+.+|++-+.
T Consensus 69 ~~~ls~e-ei~~~~~~~~~~G~~~i~l~gG~~p~----------~~~~~~~~li~~Ik~~~~~i~~~ 124 (340)
T TIGR03699 69 GYVLSVE-EILQKIEELVAYGGTQILLQGGVNPD----------LGLDYYEDLFRAIKARFPHIHIH 124 (340)
T ss_pred ccCCCHH-HHHHHHHHHHHcCCcEEEEecCCCCC----------CCHHHHHHHHHHHHHHCCCcCCC
Confidence 4678986 69999999999999999886531111 12345667899999999887543
No 253
>PRK07094 biotin synthase; Provisional
Probab=51.27 E-value=68 Score=31.70 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=36.5
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeE
Q 014237 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (428)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~ 214 (428)
-|+++.+ +++++++.+.+.|++.|.|-|--++. ++ ..-+...++.||+. +++-
T Consensus 67 r~~ls~e-ei~~~~~~~~~~g~~~i~l~gG~~~~---------~~-~~~l~~l~~~i~~~-~~l~ 119 (323)
T PRK07094 67 RYRLSPE-EILECAKKAYELGYRTIVLQSGEDPY---------YT-DEKIADIIKEIKKE-LDVA 119 (323)
T ss_pred CcCCCHH-HHHHHHHHHHHCCCCEEEEecCCCCC---------CC-HHHHHHHHHHHHcc-CCce
Confidence 4566886 69999999999999998875421110 11 12466788999887 6653
No 254
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.21 E-value=63 Score=32.96 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCCeEEEee----------c-CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-----CeEEEeeeccc
Q 014237 159 LVQEVAKARDVGVNSVVLFP----------K-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-----DLVIYTDVALD 222 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFg----------v-i~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-----dl~VitDVcLc 222 (428)
..+.++.+.+.|...|-|-+ . ..+...|+.|-.--|---++.+.|+.||++++ ++.|..-+..+
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 45556678889999998853 1 12345788776655666677889999999984 78888877765
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014237 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (428)
Q Consensus 223 ~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM 268 (428)
+|.. |-++-++++ +.+-.+.++|+|.|.-|..
T Consensus 226 ~~~~----------~g~~~ee~~----~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 226 EPEE----------PGIRMEDTL----ALVDKLADKGLDYLHISLW 257 (353)
T ss_pred cccC----------CCCCHHHHH----HHHHHHHHcCCCEEEeccC
Confidence 5421 222334443 4444457899999998764
No 255
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=51.18 E-value=2.1e+02 Score=26.70 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=23.3
Q ss_pred hcCCceEE---ecCC----CchHHHHHHHHhhCCCCeEE
Q 014237 340 SEGADILL---VKPG----LPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 340 ~EGADilM---VKPa----l~YLDII~~vk~~~~lPvaa 371 (428)
+-|+|.|. ++.. .+-+++|+++++..++|+.+
T Consensus 157 ~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia 195 (233)
T PRK00748 157 DAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIA 195 (233)
T ss_pred hcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 34899444 3332 25589999999999999877
No 256
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=51.01 E-value=51 Score=33.14 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=63.0
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEe-ecCCCCCC-C----cccCcCcCC-CCCHHHHHHHHHHHCCCeEEEeeecc
Q 014237 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLF-PKVPDALK-S----PTGDEAYND-NGLVPRTIWLLKDRYPDLVIYTDVAL 221 (428)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LF-gvi~~~~K-D----~~Gs~A~~~-~g~v~rAIr~iK~~~Pdl~VitDVcL 221 (428)
.-|+++.+ +++++++++.+.|++.++|= |.-|+ .+ + ..++.+++. -..+.+.++.||++. ++.+
T Consensus 31 ~~~~l~~e-eI~~~a~~~~~~G~~ei~l~~G~~p~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~-~~~~------ 101 (322)
T TIGR03550 31 EAALLSPE-EVLEILRKGAAAGCTEALFTFGEKPE-ERYPEAREWLAEMGYDSTLEYLRELCELALEET-GLLP------ 101 (322)
T ss_pred ccccCCHH-HHHHHHHHHHHCCCCEEEEecCCCcc-ccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhc-CCcc------
Confidence 34678886 69999999999999987764 54222 11 0 112223331 244567778887663 2211
Q ss_pred cCCCCCCcceeecCCCccccHHHHHHHHHHHHH---HHHc--------CCCeecCCCCCCchHHHHHHHHHHCCC
Q 014237 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVS---QARA--------GADVVSPSDMMDGRVGAIRAALDAEGF 285 (428)
Q Consensus 222 c~YTshGHcGil~~~g~IdND~Tl~~Lak~Als---~A~A--------GADiVAPSDMMDGRV~aIR~aLD~~Gf 285 (428)
+-+-|. .+++.++.|.+..+. ..+. +.+.++|....+-|+..||.+- +.|+
T Consensus 102 -----~~~~g~-------lt~e~l~~Lk~aG~~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~-~~Gi 163 (322)
T TIGR03550 102 -----HTNPGV-------MSRDELARLKPVNASMGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG-RLKI 163 (322)
T ss_pred -----ccCCCC-------CCHHHHHHHHhhCCCCCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH-HcCC
Confidence 112222 356667766653210 0111 3445666555566777766664 5665
No 257
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=51.00 E-value=1e+02 Score=29.73 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=85.3
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 014237 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (428)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YTshGHc 230 (428)
.+-++ .+.+.++.+++.|++.|.++|..- +...=...=-.+.++...+... ++-||+=|.
T Consensus 14 ~iD~~-~~~~~i~~l~~~Gv~gi~~~GstG--------E~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------- 74 (281)
T cd00408 14 EVDLD-ALRRLVEFLIEAGVDGLVVLGTTG--------EAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------- 74 (281)
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEECCCCc--------ccccCCHHHHHHHHHHHHHHhCCCCeEEEecC----------
Confidence 34454 589999999999999999999632 1111111112334444444433 455554321
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCCC---CCchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 014237 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSDM---MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (428)
Q Consensus 231 Gil~~~g~IdND~Tl~~Lak~Als~A~AGADiVA---PSDM---MDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGP 304 (428)
. .+.+...++|-...++|||.|. |.-- -+|-+...++..+. .+.+||=|-.
T Consensus 75 -------~----~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~---~~~pi~iYn~--------- 131 (281)
T cd00408 75 -------A----NSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA---SDLPVILYNI--------- 131 (281)
T ss_pred -------C----ccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc---CCCCEEEEEC---------
Confidence 1 1122344555566788999542 2111 15666666666554 4677777732
Q ss_pred hhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEE
Q 014237 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY 372 (428)
Q Consensus 305 FRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaY 372 (428)
|. +..+.++| |.+++.. +.-.++.+|=+..-++-+.++.+..+-.+..|
T Consensus 132 --------P~---~tg~~l~~----~~~~~L~----~~~~v~giK~s~~d~~~~~~~~~~~~~~~~v~ 180 (281)
T cd00408 132 --------PG---RTGVDLSP----ETIARLA----EHPNIVGIKDSSGDLDRLTRLIALLGPDFAVL 180 (281)
T ss_pred --------cc---ccCCCCCH----HHHHHHh----cCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEE
Confidence 11 23345554 2333333 34578888877665555666665553233333
No 258
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=50.99 E-value=22 Score=32.95 Aligned_cols=59 Identities=22% Similarity=0.440 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeeccc
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALD 222 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~------------v~rAIr~iK~~~Pdl~VitDVcLc 222 (428)
+|.+.+..+.++||++|-|=|+.+. +.+...|++... +.+.|++++++ +|-||-|+.+-
T Consensus 5 gi~~kLdyl~~lGv~~I~l~Pi~~~----~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~--gi~VilD~V~N 75 (316)
T PF00128_consen 5 GIIDKLDYLKDLGVNAIWLSPIFES----PNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKR--GIKVILDVVPN 75 (316)
T ss_dssp HHHHTHHHHHHHTESEEEESS-EES----SSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHT--TCEEEEEEETS
T ss_pred HHHHhhHHHHHcCCCceeccccccc----ccccccccceeeeccccccchhhhhhhhhhccccc--cceEEEeeecc
Confidence 6899999999999999999886442 224444544332 34555555555 79999999885
No 259
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=50.77 E-value=32 Score=33.00 Aligned_cols=72 Identities=24% Similarity=0.371 Sum_probs=49.3
Q ss_pred CCCCChHHHHHHHHhchhcCCceEEecCCCch-----HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHH
Q 014237 323 MNPANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVM 396 (428)
Q Consensus 323 mdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-----LDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~v 396 (428)
+|.-|.+||++ ....+.+.-|+ +|=|++- +++|+++|+.+ +.|+++ ...+.|-.+.+
T Consensus 10 LD~~~~~~a~~-l~~~l~~~v~~--~kvG~~l~~~~G~~~i~~lk~~~~~~~v~~--------------DLK~~Di~~~v 72 (216)
T PRK13306 10 LDNQDLESAIE-DAKKVAEEVDI--IEVGTILLLAEGMKAVRVLRALYPDKIIVA--------------DTKIADAGKIL 72 (216)
T ss_pred ecCCCHHHHHH-HHHHccccCCE--EEEChHHHHHhCHHHHHHHHHHCCCCEEEE--------------EEeecCCcHHH
Confidence 57778899987 44557766555 7877754 79999999985 688875 23344665555
Q ss_pred HHHHHHHHHhcccEeehh
Q 014237 397 MESLMCLRRAGADIILTY 414 (428)
Q Consensus 397 lEsL~~~kRAGAd~IiTY 414 (428)
.+. +.++|||++.-.
T Consensus 73 ~~~---~~~~Gad~vTvH 87 (216)
T PRK13306 73 AKM---AFEAGADWVTVI 87 (216)
T ss_pred HHH---HHHCCCCEEEEe
Confidence 555 557777776443
No 260
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=50.70 E-value=36 Score=36.76 Aligned_cols=64 Identities=31% Similarity=0.415 Sum_probs=45.9
Q ss_pred HHHHHHHHhchhcCCceEEecCC---Cch-HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHH
Q 014237 329 REALVEAQADESEGADILLVKPG---LPY-LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCL 403 (428)
Q Consensus 329 ~EAlrE~~lDi~EGADilMVKPa---l~Y-LDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~ 403 (428)
.+.+..+..=++.|+|+|-|=++ ..+ +|.|+++|+.+ ++||.|=+| .+ .|....+
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V---------------~t-----~~~a~~~ 299 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV---------------VT-----ADQAKNL 299 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCc---------------CC-----HHHHHHH
Confidence 34466666667889999999883 334 89999999998 599988333 22 2333456
Q ss_pred HHhcccEee
Q 014237 404 RRAGADIIL 412 (428)
Q Consensus 404 kRAGAd~Ii 412 (428)
..||||.|.
T Consensus 300 ~~aGad~I~ 308 (495)
T PTZ00314 300 IDAGADGLR 308 (495)
T ss_pred HHcCCCEEE
Confidence 678999994
No 261
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=50.65 E-value=29 Score=34.33 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec---ccCCCCCCcceeecC
Q 014237 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGIVRE 235 (428)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVc---Lc~YTshGHcGil~~ 235 (428)
.+.++.+++.|+..|-+|-.+.+. .+...+..--..-..+.++++..|+.. +.|..-+| -|||.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G--~~v~~~i~~~f~~~~~---------- 143 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAG--LRVRGYVSTAFGCPYE---------- 143 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEeEecCCCC----------
Confidence 567899999999999887644421 122222111111122334555555553 33433333 35541
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 014237 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (428)
Q Consensus 236 ~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD 270 (428)
|.+ +.+.+.+.+-...++|||.|.-.|+.=
T Consensus 144 -~~~----~~~~~~~~~~~~~~~Ga~~i~l~DT~G 173 (274)
T cd07938 144 -GEV----PPERVAEVAERLLDLGCDEISLGDTIG 173 (274)
T ss_pred -CCC----CHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 333 244444555555679999999999864
No 262
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=50.64 E-value=1.1e+02 Score=30.05 Aligned_cols=108 Identities=13% Similarity=0.175 Sum_probs=58.9
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcce
Q 014237 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDG 231 (428)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~-Pdl~VitDVcLc~YTshGHcG 231 (428)
+..+ .+.+.++.+.+.|++.+.+.|.. |+..+=.+-=-.+.++...+.. .++-||+=|
T Consensus 16 iD~~-~~~~~i~~l~~~Gv~Gi~~~Gst--------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv------------ 74 (285)
T TIGR00674 16 VDFA-ALEKLIDFQIENGTDAIVVVGTT--------GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT------------ 74 (285)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECccC--------cccccCCHHHHHHHHHHHHHHhCCCCeEEEeC------------
Confidence 4454 58899999999999999999852 2221111111223344333332 234454322
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCCCC---CchHHHHHHHHHHCCCCCceeech
Q 014237 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSDMM---DGRVGAIRAALDAEGFQHVSIMSY 293 (428)
Q Consensus 232 il~~~g~IdND~Tl~~Lak~Als~A~AGADiVA---PSDMM---DGRV~aIR~aLD~~Gf~~v~IMSY 293 (428)
...|.+...++|-..+++|||.|. |.=-- |+-+...++..|.. +++|+=|
T Consensus 75 ---------~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~---~~pi~lY 130 (285)
T TIGR00674 75 ---------GSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV---DLPIILY 130 (285)
T ss_pred ---------CCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC---CCCEEEE
Confidence 122234455566666789999542 32111 55555556555543 5677766
No 263
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=50.61 E-value=37 Score=34.15 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=70.3
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccchhh
Q 014237 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (428)
Q Consensus 236 ~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRd 307 (428)
||.||=++ +.+..-.+.++|.|-|-+-+.. |=|...++.+.+..+ .+++|.+=
T Consensus 19 dg~vD~~a----~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~-grvpviaG-------------- 79 (299)
T COG0329 19 DGSVDEEA----LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVG-GRVPVIAG-------------- 79 (299)
T ss_pred CCCcCHHH----HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHC-CCCcEEEe--------------
Confidence 57766443 3333445778999866554432 335555666666665 35555432
Q ss_pred hhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEech
Q 014237 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 376 (428)
Q Consensus 308 Aa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 376 (428)
++ -.|.+||+.-+..=.+-|||-+||=|=--| .+=.+.+.+..++|+.-||+-+
T Consensus 80 -~g--------------~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~ 140 (299)
T COG0329 80 -VG--------------SNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPS 140 (299)
T ss_pred -cC--------------CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 11 127899999999888999999999664322 4445677788899999999754
No 264
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=50.56 E-value=38 Score=35.62 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=42.4
Q ss_pred HhchhcCCceEEecCCCch----HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 014237 336 QADESEGADILLVKPGLPY----LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 410 (428)
Q Consensus 336 ~lDi~EGADilMVKPal~Y----LDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~ 410 (428)
..+...|+|+|.|=-+--| +|.|+.+|++| +++|.|=|| .. -|....+..||||.
T Consensus 116 L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV---------------~T-----~e~a~~Li~aGAD~ 175 (346)
T PRK05096 116 ILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNV---------------VT-----GEMVEELILSGADI 175 (346)
T ss_pred HHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecc---------------cC-----HHHHHHHHHcCCCE
Confidence 3333469999999998776 88999999999 599998887 12 22333466689998
Q ss_pred ee
Q 014237 411 IL 412 (428)
Q Consensus 411 Ii 412 (428)
|.
T Consensus 176 vK 177 (346)
T PRK05096 176 VK 177 (346)
T ss_pred EE
Confidence 73
No 265
>PRK13753 dihydropteroate synthase; Provisional
Probab=50.43 E-value=63 Score=32.80 Aligned_cols=97 Identities=14% Similarity=0.030 Sum_probs=59.9
Q ss_pred CC-CCCCccccCCCCCChHHHHHHHHhchhcCCceEEe-----cCCCch----------HHHHHHHHhhCCCCeEEEEec
Q 014237 312 NP-RFGDKKTYQMNPANYREALVEAQADESEGADILLV-----KPGLPY----------LDVIRLLRDKYPLPIAAYQVS 375 (428)
Q Consensus 312 ap-~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMV-----KPal~Y----------LDII~~vk~~~~lPvaaYqVS 375 (428)
+| +|-|-..|+ +.+.|+..+..-+++|||||=| .|+-.. +.+|+.+++. ..|+..= +
T Consensus 11 TPDSFsDGg~~~----~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-~~~ISID--T 83 (279)
T PRK13753 11 TEDSFFDESRRL----DPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ-MHRVSID--S 83 (279)
T ss_pred CCCCCCCCCCCC----CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-CCcEEEE--C
Confidence 44 366655553 6789999999999999999976 455432 2577777765 4665431 2
Q ss_pred hHHHHHHHHHHCCC---CchhhH-HHHHHHHHHHhcccEeehhc
Q 014237 376 GEYSMIKAGGALKM---IDEQRV-MMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 376 GEYaMIkaAa~~G~---iD~~~~-vlEsL~~~kRAGAd~IiTYf 415 (428)
-....+++|.++|. -|-... --+.+.-+...|+-+||.+.
T Consensus 84 ~~~~va~~al~aGadiINDVsg~~d~~~~~vva~~~~~vVlmH~ 127 (279)
T PRK13753 84 FQPETQRYALKRGVGYLNDIQGFPDPALYPDIAEADCRLVVMHS 127 (279)
T ss_pred CCHHHHHHHHHcCCCEEEeCCCCCchHHHHHHHHcCCCEEEEec
Confidence 34567778887772 111111 11222335567888888664
No 266
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=50.43 E-value=93 Score=30.69 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 014237 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (428)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGH 229 (428)
|.|..--++.+..++-+.+-||+.|=+ + |+-....+ +||.++++||+++|=+
T Consensus 18 Vlr~~~~e~a~~~a~Ali~gGi~~IEI----T-----------l~sp~a~e-~I~~l~~~~p~~lIGA------------ 69 (211)
T COG0800 18 VIRGDDVEEALPLAKALIEGGIPAIEI----T-----------LRTPAALE-AIRALAKEFPEALIGA------------ 69 (211)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeEEE----e-----------cCCCCHHH-HHHHHHHhCcccEEcc------------
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014237 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (428)
Q Consensus 230 cGil~~~g~IdND~Tl~~Lak~Als~A~AGADiV 263 (428)
|+|.|.++++++ ++|||+.+
T Consensus 70 -------GTVL~~~q~~~a-------~~aGa~fi 89 (211)
T COG0800 70 -------GTVLNPEQARQA-------IAAGAQFI 89 (211)
T ss_pred -------ccccCHHHHHHH-------HHcCCCEE
No 267
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=50.41 E-value=14 Score=36.51 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHhcccEeehh
Q 014237 392 EQRVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 392 ~~~~vlEsL~~~kRAGAd~IiTY 414 (428)
..+.|.+.+..+.+||||+|.|.
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~Tn 61 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITTN 61 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEC
T ss_pred CHHHHHHHHHHHHHCCCCeEEec
Confidence 47899999999999999999863
No 268
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=50.33 E-value=69 Score=34.66 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=70.1
Q ss_pred CCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHH-HHhhCCCCeEE---EEechHHHHHHHHHHCCCCch-hhHHHH
Q 014237 324 NPANYREALVEAQADESEGADILLVKPGLPYLDVIRL-LRDKYPLPIAA---YQVSGEYSMIKAGGALKMIDE-QRVMME 398 (428)
Q Consensus 324 dpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~-vk~~~~lPvaa---YqVSGEYaMIkaAa~~G~iD~-~~~vlE 398 (428)
|-.|.++=++.+..=++-|||-||==--.--||=||+ +-+++++||+. ||+-.|+..= ..+..|. .+-+++
T Consensus 72 ~~~d~~~E~~K~~~A~~~GADtiMDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k----~~~~~~mt~d~~~~ 147 (431)
T PRK13352 72 DISDIEEELEKAKVAVKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARK----YGSVVDMTEDDLFD 147 (431)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhc----CCChhhCCHHHHHH
Confidence 3457778889999889999999997776677888875 66788899886 7766655110 1122222 357788
Q ss_pred HHHHHHHhcccEeehh--cHHHHHHHHhccCC
Q 014237 399 SLMCLRRAGADIILTY--FALQAARCLCGEKR 428 (428)
Q Consensus 399 sL~~~kRAGAd~IiTY--fA~e~a~wL~~~~~ 428 (428)
.+..=-+-|.|++--. ...+.+++|++.+|
T Consensus 148 ~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R 179 (431)
T PRK13352 148 VIEKQAKDGVDFMTIHCGVTRETLERLKKSGR 179 (431)
T ss_pred HHHHHHHhCCCEEEEccchhHHHHHHHHhcCC
Confidence 8888889999986333 24677777765443
No 269
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=50.27 E-value=32 Score=34.41 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCC---CHHHHHHHHHHHCCCeEEEeeec---ccCCCCCCccee
Q 014237 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNG---LVPRTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGI 232 (428)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~KD~~Gs~A~~~~g---~v~rAIr~iK~~~Pdl~VitDVc---Lc~YTshGHcGi 232 (428)
.+.++.+++.|+..|-+|--+.+. .+...| .+.+- -+.++|+..|+.. +.|.+-+| -|||
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~---~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~-------- 148 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASEAFSQKNIN---CSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPY-------- 148 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCC--------
Confidence 456688899999999998543321 111111 11112 2345666666653 55544444 4555
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 014237 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (428)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD 270 (428)
+|.. +.+.+.+.+-...++|||.|.=.|+.=
T Consensus 149 ---~~~~----~~~~~~~~~~~~~~~G~d~i~l~DT~G 179 (287)
T PRK05692 149 ---EGEV----PPEAVADVAERLFALGCYEISLGDTIG 179 (287)
T ss_pred ---CCCC----CHHHHHHHHHHHHHcCCcEEEeccccC
Confidence 2332 345566666666789999999888764
No 270
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=50.20 E-value=13 Score=38.26 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=23.8
Q ss_pred CCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 388 KMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 388 G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
=++|+.++|-|....|.|||||+|+|
T Consensus 37 ~l~~~peiv~~vh~df~~aGa~ii~T 62 (300)
T COG2040 37 ALVDEPEIVRNVHADFLRAGADIITT 62 (300)
T ss_pred hcccCHHHHHHHHHHHHHhcCcEEee
Confidence 36788999999999999999999986
No 271
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=49.63 E-value=97 Score=28.14 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=31.1
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 014237 355 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 355 LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYf 415 (428)
-++|.++++ .+++|.+|-|-- ..+.+..+.+.|+|.|+|-|
T Consensus 139 ~~~v~~~~~-~g~~v~~wtvn~-------------------~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 139 TELIASANK-LGLLSRIWTVND-------------------NNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred HHHHHHHHH-CCCEEEEEeeCC-------------------hHHHHHHHHHcCCCEEeCCC
Confidence 456777776 689999999843 25566677888999999954
No 272
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=49.40 E-value=1.1e+02 Score=31.11 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCCeEEEee----------c-CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCC
Q 014237 159 LVQEVAKARDVGVNSVVLFP----------K-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFg----------v-i~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YTs 226 (428)
..+.++.+.+.|...|-|.+ . ..+...|+.|-.-.|.--++...++.|+++++ ++.|..=+....|
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~-- 216 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL-- 216 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc--
Confidence 55666677899999999987 1 12346788887666677788899999999995 6776643333222
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeechhhh-hccccccc
Q 014237 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMSYTAK-YASSFYGP 304 (428)
Q Consensus 227 hGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~IMSYsaK-yASafYGP 304 (428)
| + |-.+.++++ +.+-.+.++|+|.|.-|-.+. +++..+. .|.-+ +.-.++..
T Consensus 217 --~-----~-~g~~~~e~~----~i~~~Le~~G~d~i~vs~g~~e~~~~~~~--------------~~~~~~~~~~~~~~ 270 (353)
T cd02930 217 --V-----E-GGSTWEEVV----ALAKALEAAGADILNTGIGWHEARVPTIA--------------TSVPRGAFAWATAK 270 (353)
T ss_pred --C-----C-CCCCHHHHH----HHHHHHHHcCCCEEEeCCCcCCCCCcccc--------------ccCCchhhHHHHHH
Confidence 1 1 112345554 344445689999998765431 2221000 01100 11123445
Q ss_pred hhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcC-CceEEe-cCCCchHHHHHHHHhhC
Q 014237 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLV-KPGLPYLDVIRLLRDKY 365 (428)
Q Consensus 305 FRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EG-ADilMV-KPal~YLDII~~vk~~~ 365 (428)
+|+++ +.|-.+.-.- -+| .+ +.++ +++| +|+||+ .|.+.-=|+++++++.-
T Consensus 271 ik~~v-~iPVi~~G~i--~~~---~~-a~~~---i~~g~~D~V~~gR~~l~dP~~~~k~~~g~ 323 (353)
T cd02930 271 LKRAV-DIPVIASNRI--NTP---EV-AERL---LADGDADMVSMARPFLADPDFVAKAAAGR 323 (353)
T ss_pred HHHhC-CCCEEEcCCC--CCH---HH-HHHH---HHCCCCChhHhhHHHHHCccHHHHHHhCC
Confidence 66665 3455432110 012 22 2222 4555 999976 67777778999988754
No 273
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=49.34 E-value=21 Score=32.20 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=36.3
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--CCceeechhhhhccccccchhh
Q 014237 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFRE 307 (428)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf--~~v~IMSYsaKyASafYGPFRd 307 (428)
+|=|..+..|.+|.|-+.+.++|| ...-.+-.+-..|..||.-+++
T Consensus 9 iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~ 56 (139)
T PRK14545 9 MIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAE 56 (139)
T ss_pred EECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCC
Confidence 566888778999999999999999 3445667777788899965544
No 274
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=48.71 E-value=25 Score=31.79 Aligned_cols=95 Identities=18% Similarity=0.352 Sum_probs=62.6
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--CCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhch
Q 014237 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADE 339 (428)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf--~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi 339 (428)
+|=|..+-.|.+|.|-+.+.++|| ...-.+-.+-..|..||..++
T Consensus 7 iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~--------------------------------- 53 (137)
T PRK14542 7 MIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHS--------------------------------- 53 (137)
T ss_pred EECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhc---------------------------------
Confidence 466777889999999999999999 445556666677788885432
Q ss_pred hcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHH
Q 014237 340 SEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 402 (428)
Q Consensus 340 ~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~ 402 (428)
.|| .|-|++..+. .=|+.|+.++||=+.-+-=.-.|..|.+.+--+||.+
T Consensus 54 --------~k~--f~~~Lv~~m~---sGp~va~~l~g~nav~~~R~l~Gpt~p~~A~p~siR~ 103 (137)
T PRK14542 54 --------ARP--FYNDLCNYMS---SGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRA 103 (137)
T ss_pred --------CCc--cHHHHHHHHh---cCCeEEEEEeCCCHHHHHHHHhCCCCchhCCCCCchH
Confidence 155 4666665543 3488888888875554444555666655443344433
No 275
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.70 E-value=2.8e+02 Score=27.38 Aligned_cols=178 Identities=20% Similarity=0.243 Sum_probs=98.1
Q ss_pred CCC-CHHHHHHHHHHHC---CCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 014237 195 DNG-LVPRTIWLLKDRY---PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (428)
Q Consensus 195 ~~g-~v~rAIr~iK~~~---Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD 270 (428)
+|| +-.+-+....++. --|+|.--+..++- ..++.+ .-.+.||+.++.+.+.+-.--+.|+-+++
T Consensus 27 ~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~vh~~g~~~~~------ 95 (327)
T cd02803 27 EDGTPTDELIEYYEERAKGGVGLIITEAAYVDPE-GKGYPG----QLGIYDDEQIPGLRKLTEAVHAHGAKIFA------ 95 (327)
T ss_pred CCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCc-ccCCCC----CcCcCCHHHHHHHHHHHHHHHhCCCHhhH------
Confidence 455 4556677776654 23544433444433 222111 12467889999999988777778876542
Q ss_pred chHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhc--------hhcC
Q 014237 271 GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQAD--------ESEG 342 (428)
Q Consensus 271 GRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lD--------i~EG 342 (428)
-|-..|.. +.........++| |+.. ....++++-+-..|-|.++..| .+-|
T Consensus 96 --------Ql~h~G~~-----~~~~~~~~~~~~~------s~~~--~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aG 154 (327)
T cd02803 96 --------QLAHAGRQ-----AQPNLTGGPPPAP------SAIP--SPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAG 154 (327)
T ss_pred --------HhhCCCcC-----CCCcCCCCCccCC------CCCC--CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 22222321 1000000011111 1111 1233444444444545544443 3459
Q ss_pred CceEEecCCCch----------------------------HHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCCch
Q 014237 343 ADILLVKPGLPY----------------------------LDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDE 392 (428)
Q Consensus 343 ADilMVKPal~Y----------------------------LDII~~vk~~~--~lPvaaYqVSGEYaMIkaAa~~G~iD~ 392 (428)
+|.|=+.-+-.| ++||+.+|+.+ ++||.. -+|.+... ..| ++.
T Consensus 155 fDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~v-ris~~~~~-----~~g-~~~ 227 (327)
T cd02803 155 FDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGV-RLSADDFV-----PGG-LTL 227 (327)
T ss_pred CCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEE-EechhccC-----CCC-CCH
Confidence 999999999777 69999999998 577764 45543211 123 344
Q ss_pred hhHHHHHHHHHHHhcccEee
Q 014237 393 QRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 393 ~~~vlEsL~~~kRAGAd~Ii 412 (428)
+ -.+|.+..+..+|+|+|-
T Consensus 228 ~-e~~~la~~l~~~G~d~i~ 246 (327)
T cd02803 228 E-EAIEIAKALEEAGVDALH 246 (327)
T ss_pred H-HHHHHHHHHHHcCCCEEE
Confidence 3 457788888889999984
No 276
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=48.67 E-value=1.3e+02 Score=27.38 Aligned_cols=87 Identities=16% Similarity=0.297 Sum_probs=53.0
Q ss_pred CCCCChHHHHHHHHhchhcCCceEEecCCCch-----HHHHHHHHhhC-CCCeEE--EEechHHHHHHHHHHCCC-----
Q 014237 323 MNPANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAA--YQVSGEYSMIKAGGALKM----- 389 (428)
Q Consensus 323 mdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-----LDII~~vk~~~-~lPvaa--YqVSGEYaMIkaAa~~G~----- 389 (428)
+|.-|.++++. ....+.++.|+ +|=+.++ ++.|+.+|+.+ ++|+.+ +-...+-..++.+++.|.
T Consensus 7 ~d~~~~~~~~~-~~~~l~~~i~~--ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~ 83 (202)
T cd04726 7 LDLLDLEEALE-LAKKVPDGVDI--IEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTV 83 (202)
T ss_pred EcCCCHHHHHH-HHHHhhhcCCE--EEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEE
Confidence 35556666655 55567777666 5668888 79999999985 799887 323332224455666664
Q ss_pred Cch--hhHHHHHHHHHHHhcccEee
Q 014237 390 IDE--QRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 390 iD~--~~~vlEsL~~~kRAGAd~Ii 412 (428)
-++ ...+-|.+..+++.|..+++
T Consensus 84 h~~~~~~~~~~~i~~~~~~g~~~~v 108 (202)
T cd04726 84 LGAAPLSTIKKAVKAAKKYGKEVQV 108 (202)
T ss_pred EeeCCHHHHHHHHHHHHHcCCeEEE
Confidence 011 12344555666666777763
No 277
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.63 E-value=1.2e+02 Score=29.67 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=55.4
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCH---HHHHHHHHHHC-CCeEEEeeecccCCCCC
Q 014237 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLV---PRTIWLLKDRY-PDLVIYTDVALDPYSSD 227 (428)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v---~rAIr~iK~~~-Pdl~VitDVcLc~YTsh 227 (428)
+.|+...+.+.++++.++|..+|-||..=|.. |...-+- .+.++...+++ ..+..+ +..+||.
T Consensus 6 h~s~~g~~~~a~~~~~~~G~~~~qif~~~P~~---------w~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~Hapy~-- 72 (274)
T TIGR00587 6 HVSAAGGLQAAYNRAAEIGATAFMFFLKSPRW---------WRRPMLEEEVIDWFKAALETNKNLSQIV--LVHAPYL-- 72 (274)
T ss_pred EEeccCCHHHHHHHHHHhCCCEEEEEecCccc---------cCCCCCCHHHHHHHHHHHHHcCCCCcce--eccCCee--
Confidence 44565678999999999999999999873332 2222221 23443332232 221111 3356664
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014237 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (428)
Q Consensus 228 GHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiV 263 (428)
-.+...|..+ -+.|++.+.+..-.-++-||+.|
T Consensus 73 --iNlas~~~~~-r~~sv~~~~~~i~~A~~lga~~v 105 (274)
T TIGR00587 73 --INLASPDEEK-EEKSLDVLDEELKRCELLGIMLY 105 (274)
T ss_pred --eecCCCCHHH-HHHHHHHHHHHHHHHHHcCCCEE
Confidence 1122112222 25788888888777788899844
No 278
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=48.56 E-value=1e+02 Score=30.15 Aligned_cols=98 Identities=17% Similarity=0.279 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCcceeecC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVRE 235 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P--dl~VitDVcLc~YTshGHcGil~~ 235 (428)
..+.+++++++.|...|.+--.+.. .+ ++-+.+-++.+++..- ++.++.-+ |..-.| + +
T Consensus 94 ~~~~~ve~A~~~Gad~v~~~~~~g~-~~----------~~~~~~~~~~v~~~~~~~g~pl~vi~----~~~g~~---~-e 154 (267)
T PRK07226 94 VLVGTVEEAIKLGADAVSVHVNVGS-ET----------EAEMLEDLGEVAEECEEWGMPLLAMM----YPRGPG---I-K 154 (267)
T ss_pred eeeecHHHHHHcCCCEEEEEEecCC-hh----------HHHHHHHHHHHHHHHHHcCCcEEEEE----ecCCCc---c-C
Confidence 3678899999999998877332111 11 1224555666665431 33333211 322112 2 2
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHH
Q 014237 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281 (428)
Q Consensus 236 ~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD 281 (428)
++ .+++.+...++ ..+++|||+|-+| .-|.+..+|+...
T Consensus 155 ~~--~~~~~i~~a~~---~a~e~GAD~vKt~--~~~~~~~l~~~~~ 193 (267)
T PRK07226 155 NE--YDPEVVAHAAR---VAAELGADIVKTN--YTGDPESFREVVE 193 (267)
T ss_pred CC--ccHHHHHHHHH---HHHHHCCCEEeeC--CCCCHHHHHHHHH
Confidence 23 13333443444 4457999999887 3455666666654
No 279
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=48.55 E-value=93 Score=31.66 Aligned_cols=82 Identities=18% Similarity=0.362 Sum_probs=54.0
Q ss_pred ccccCCCCCChHHHHHHHHhchhc-CCceEEecCCCch-------------------HHHHHHHHhhCCCCeEEEEechH
Q 014237 318 KKTYQMNPANYREALVEAQADESE-GADILLVKPGLPY-------------------LDVIRLLRDKYPLPIAAYQVSGE 377 (428)
Q Consensus 318 RktYQmdpaN~~EAlrE~~lDi~E-GADilMVKPal~Y-------------------LDII~~vk~~~~lPvaaYqVSGE 377 (428)
.-..|+--.|.++ +.++...++| |+|+|=+-=|-|. .+|++.+++..++||.+.- .
T Consensus 66 p~~vQl~g~~p~~-~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKi-R-- 141 (333)
T PRK11815 66 PVALQLGGSDPAD-LAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKH-R-- 141 (333)
T ss_pred cEEEEEeCCCHHH-HHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEE-E--
Confidence 3457777666655 4455555555 8999854333222 5899999999999999863 1
Q ss_pred HHHHHHHHHCCCCchh--hHHHHHHHHHHHhcccEee
Q 014237 378 YSMIKAGGALKMIDEQ--RVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 378 YaMIkaAa~~G~iD~~--~~vlEsL~~~kRAGAd~Ii 412 (428)
-||-+++ .-+.|.+..+..+|+|.|+
T Consensus 142 ---------~g~~~~~t~~~~~~~~~~l~~aG~d~i~ 169 (333)
T PRK11815 142 ---------IGIDDQDSYEFLCDFVDTVAEAGCDTFI 169 (333)
T ss_pred ---------eeeCCCcCHHHHHHHHHHHHHhCCCEEE
Confidence 1333221 2356777788889999985
No 280
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=48.17 E-value=6.9 Score=38.95 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=66.0
Q ss_pred CcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHHHcCCCeecC--CC
Q 014237 192 AYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQARAGADVVSP--SD 267 (428)
Q Consensus 192 A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGi--l~~~g~IdND~Tl~~Lak~Als~A~AGADiVAP--SD 267 (428)
++|-++.+.+|.++.| .+|+..|+-=+ |-|..|-.-+ |..+| |.-.-|+=-=..||+.-|+|||++|+| +-
T Consensus 72 s~d~e~mi~eA~~L~~-~~~~~~i~IKI---P~T~eGl~Ai~~L~~eG-I~~NvTLiFS~~QAl~aa~aga~~iSpFvgR 146 (239)
T COG0176 72 SFDAEAMIEEARRLAK-LIDNVGIVIKI---PATWEGLKAIKALEAEG-IKTNVTLIFSAAQALLAAEAGATYISPFVGR 146 (239)
T ss_pred cccHHHHHHHHHHHHH-hcCcCCeEEEe---CCCHHHHHHHHHHHHCC-CeeeEEEEecHHHHHHHHHhCCeEEEeecch
Confidence 3677889999987775 46777544443 6676664332 33456 555567777788999999999999999 33
Q ss_pred CCC------chHHHHHHHHHHCCCCCceeechhhh
Q 014237 268 MMD------GRVGAIRAALDAEGFQHVSIMSYTAK 296 (428)
Q Consensus 268 MMD------GRV~aIR~aLD~~Gf~~v~IMSYsaK 296 (428)
|.| +-|..+|++++..+.....++.=|++
T Consensus 147 i~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas~~ 181 (239)
T COG0176 147 IDDWGIDGMLGIAEAREIYDYYKQHGAKTLVASAR 181 (239)
T ss_pred HHhhccCchHHHHHHHHHHHHhccccceEEEecCc
Confidence 333 24677788888777654444433333
No 281
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=48.11 E-value=68 Score=31.12 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=41.2
Q ss_pred cCCceEEecCC--------------CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHh
Q 014237 341 EGADILLVKPG--------------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 406 (428)
Q Consensus 341 EGADilMVKPa--------------l~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRA 406 (428)
.|+|+|-+==+ -...+||+.+|+.+++||.+ -+++. ++.+ -+.|....+..+
T Consensus 123 ~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~v-Kl~~~------------~~~~-~~~~~a~~l~~~ 188 (289)
T cd02810 123 AGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLV-KLSPY------------FDLE-DIVELAKAAERA 188 (289)
T ss_pred hCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEE-EeCCC------------CCHH-HHHHHHHHHHHc
Confidence 47888876211 13468999999998999874 45532 3433 356778888899
Q ss_pred cccEeeh
Q 014237 407 GADIILT 413 (428)
Q Consensus 407 GAd~IiT 413 (428)
|||.|..
T Consensus 189 Gad~i~~ 195 (289)
T cd02810 189 GADGLTA 195 (289)
T ss_pred CCCEEEE
Confidence 9999885
No 282
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=47.98 E-value=1.1e+02 Score=27.96 Aligned_cols=45 Identities=18% Similarity=0.398 Sum_probs=31.8
Q ss_pred CCCCChHHHHHHHHhchhcCCceEEecCCCch-----HHHHHHHHhhC-CCCeE
Q 014237 323 MNPANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIA 370 (428)
Q Consensus 323 mdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-----LDII~~vk~~~-~lPva 370 (428)
+|--|.++|++=++. ++.|.|+ +|=++++ +++|+.+|+.+ +.++.
T Consensus 6 lD~~~~~~a~~~~~~-l~~~v~~--iev~~~l~~~~g~~~i~~l~~~~~~~~i~ 56 (206)
T TIGR03128 6 LDLLDIEEALELAEK-VADYVDI--IEIGTPLIKNEGIEAVKEMKEAFPDRKVL 56 (206)
T ss_pred ecCCCHHHHHHHHHH-cccCeeE--EEeCCHHHHHhCHHHHHHHHHHCCCCEEE
Confidence 567788888876654 4777776 4556555 79999999986 44454
No 283
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=47.95 E-value=2.7e+02 Score=27.00 Aligned_cols=150 Identities=18% Similarity=0.232 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
...+.++.+++.||+.+=+ + ++..+ ...+|+.++++||++.|-+ |
T Consensus 21 ~a~~~~~al~~~Gi~~iEi----t-----------~~t~~-a~~~i~~l~~~~~~~~vGA-------------------G 65 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEV----T-----------LRTPV-ALDAIRLLRKEVPDALIGA-------------------G 65 (204)
T ss_pred HHHHHHHHHHHcCCCEEEE----e-----------CCCcc-HHHHHHHHHHHCCCCEEEE-------------------E
Confidence 5889999999999998765 1 11112 3458999999999866643 6
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee-cCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCC
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVV-SPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiV-APSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fg 316 (428)
.|.+-++++ ...+|||+.+ +|. +-+ .+=+...+.|. +.+ | .
T Consensus 66 TVl~~~~a~-------~a~~aGA~FivsP~-~~~----~v~~~~~~~~i---~~i------------P---------G-- 107 (204)
T TIGR01182 66 TVLNPEQLR-------QAVDAGAQFIVSPG-LTP----ELAKHAQDHGI---PII------------P---------G-- 107 (204)
T ss_pred eCCCHHHHH-------HHHHcCCCEEECCC-CCH----HHHHHHHHcCC---cEE------------C---------C--
Confidence 666655544 4567999976 443 322 22223334443 221 1 1
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch--HHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchh
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQ 393 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y--LDII~~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~iD~~ 393 (428)
-....| +..=.+-|||+|=+=|+..+ .+-|+.+|.=|+ +|+.+ -|-++.
T Consensus 108 --------~~TptE----i~~A~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~p---------------tGGV~~- 159 (204)
T TIGR01182 108 --------VATPSE----IMLALELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCP---------------TGGINL- 159 (204)
T ss_pred --------CCCHHH----HHHHHHCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEe---------------cCCCCH-
Confidence 013334 44446789999999999877 589999998774 66653 344554
Q ss_pred hHHHHHHHHHHHhcccEee
Q 014237 394 RVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 394 ~~vlEsL~~~kRAGAd~Ii 412 (428)
+.+..+..||+..+-
T Consensus 160 ----~N~~~~l~aGa~~vg 174 (204)
T TIGR01182 160 ----ANVRDYLAAPNVACG 174 (204)
T ss_pred ----HHHHHHHhCCCEEEE
Confidence 677788889998754
No 284
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.70 E-value=72 Score=29.88 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
.+.+.++.+++.|++.|=| . .|+..+ .+.++.+++.+|.+. .|+..++
T Consensus 25 ~~~~~~~~~~~~Gv~~vql--r----~k~~~~----------~e~~~~~~~~~~~~~------------~g~gtvl---- 72 (187)
T PRK07455 25 LGLQMAEAVAAGGMRLIEI--T----WNSDQP----------AELISQLREKLPECI------------IGTGTIL---- 72 (187)
T ss_pred HHHHHHHHHHHCCCCEEEE--e----CCCCCH----------HHHHHHHHHhCCCcE------------EeEEEEE----
Confidence 5899999999999998877 1 344422 356777887776422 2233333
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCe-ecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCC
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADV-VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADi-VAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fg 316 (428)
.| +.++. | .++|||. +.|.. |=.+...++.+ |. . + -.|
T Consensus 73 --~~-d~~~~----A---~~~gAdgv~~p~~--~~~~~~~~~~~---~~-~-------------~------------i~G 111 (187)
T PRK07455 73 --TL-EDLEE----A---IAAGAQFCFTPHV--DPELIEAAVAQ---DI-P-------------I------------IPG 111 (187)
T ss_pred --cH-HHHHH----H---HHcCCCEEECCCC--CHHHHHHHHHc---CC-C-------------E------------EcC
Confidence 23 23322 2 4689994 46653 22233333332 21 0 0 012
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch--HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchh
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQ 393 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y--LDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~ 393 (428)
-.|..|+.+. .+.|||.|=+=|+-+. +|.|+.++..+ ++|+.+ -|-|+.
T Consensus 112 --------~~t~~e~~~A----~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~~ipvva---------------iGGI~~- 163 (187)
T PRK07455 112 --------ALTPTEIVTA----WQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLIP---------------TGGVTL- 163 (187)
T ss_pred --------cCCHHHHHHH----HHCCCCEEEECcCCcccCHHHHHHHHhhCCCCcEEE---------------eCCCCH-
Confidence 2244554333 3589999999888665 79999999999 599887 466665
Q ss_pred hHHHHHHHHHHHhcccEe
Q 014237 394 RVMMESLMCLRRAGADII 411 (428)
Q Consensus 394 ~~vlEsL~~~kRAGAd~I 411 (428)
|-+..+..|||+.+
T Consensus 164 ----~n~~~~l~aGa~~v 177 (187)
T PRK07455 164 ----ENAQAFIQAGAIAV 177 (187)
T ss_pred ----HHHHHHHHCCCeEE
Confidence 55667888999985
No 285
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=46.82 E-value=47 Score=32.95 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=68.7
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcC-CCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAG-ADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AG-ADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGP 304 (428)
++||.|| .+.+..+.+. +.++| +|-|.+.+.+ +=|..-++.+.+..+ .+++||.-..
T Consensus 13 ~~dg~iD-~~~~~~~i~~---~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~--------- 78 (290)
T TIGR00683 13 NEDGTIN-EKGLRQIIRH---NIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVG--------- 78 (290)
T ss_pred CCCCCcC-HHHHHHHHHH---HHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEecC---------
Confidence 3456665 5555555554 56689 9999777543 235666676776654 3566664311
Q ss_pred hhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhC-CCCeEEEEech
Q 014237 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKY-PLPIAAYQVSG 376 (428)
Q Consensus 305 FRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~-~lPvaaYqVSG 376 (428)
-.+.+|++..+..=.+=|||.|||=|-..| ++=.+++.+.. ++|+..||.-+
T Consensus 79 --------------------~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~ 138 (290)
T TIGR00683 79 --------------------SVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPF 138 (290)
T ss_pred --------------------CCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCcc
Confidence 125667777666666779999999553211 34445665666 79999999654
No 286
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=46.73 E-value=68 Score=34.33 Aligned_cols=87 Identities=17% Similarity=0.296 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHhchhcCCceEEecCCCchH------HHHHHHHhhCCCCeEEEEech-----HH-HHHHHHHHCC--CC
Q 014237 325 PANYREALVEAQADESEGADILLVKPGLPYL------DVIRLLRDKYPLPIAAYQVSG-----EY-SMIKAGGALK--MI 390 (428)
Q Consensus 325 paN~~EAlrE~~lDi~EGADilMVKPal~YL------DII~~vk~~~~lPvaaYqVSG-----EY-aMIkaAa~~G--~i 390 (428)
..+.+|++.++.... ++||+|=.-=. |+ + ++.+++....|++.|--+. || .+++.+++.| ++
T Consensus 8 ~~~~~e~~~~~~~~~-~~~D~vE~R~D--~~~~~~~~~-~~~l~~~~~~pilT~R~~~~~~~~~~~~~l~~~~~~~~d~v 83 (477)
T PRK09310 8 GPSFLEAKQQILRSL-KLVDCIELRVD--LLLSLSDLE-LKKLIELAPIPILTWKKHESCSQAAWIDKMQSLAKLNPNYL 83 (477)
T ss_pred CCCHHHHHHHHHHhc-ccCCEEEEEeh--hhccCCHHH-HHHHHhcCCCceEEeccCccCCHHHHHHHHHHHHHhCCCEE
Confidence 458889999988888 88999743322 22 3 4666665578999988555 34 6778888776 44
Q ss_pred chh----hHHHHHHHHHHHhcccEeehhcH
Q 014237 391 DEQ----RVMMESLMCLRRAGADIILTYFA 416 (428)
Q Consensus 391 D~~----~~vlEsL~~~kRAGAd~IiTYfA 416 (428)
|-+ +-.++.+...+ .|..+|++|+-
T Consensus 84 DiEl~~~~~~~~~l~~~~-~~~kvI~S~Hd 112 (477)
T PRK09310 84 DIDKDFPKEALIRIRKLH-PKIKIILSYHT 112 (477)
T ss_pred EEEecCCHHHHHHHHHhC-CCCEEEEEcCC
Confidence 543 22333343322 38889999974
No 287
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=46.58 E-value=52 Score=33.44 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=95.5
Q ss_pred CChHHHhhhhcCCCCCC---------------CceeeEEEeeCCCC--c--ccCCCCCceeechhhhHHHHHHHHHHcCC
Q 014237 111 KSPAMRASFQETNLSPA---------------NFVYPLFIHEGEED--T--PIGAMPGCYRLGWRHGLVQEVAKARDVGV 171 (428)
Q Consensus 111 ~~~~~R~lv~Et~L~~~---------------dLI~PlFV~eg~~~--~--~I~SMPGv~r~s~~~~l~~~v~~~~~~GI 171 (428)
....+|+++++..|+.= .-..=+-+.++=+. . .|+..-|-.+...+ ++.++++.+.+.|+
T Consensus 30 ~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~~~e-ei~~~a~~~~~~Gl 108 (302)
T TIGR00510 30 VIAQIKNTMKNKGLHTVCEEASCPNLTECWNHGTATFMILGDICTRRCPFCDVAHGRNPLPPDPE-EPAKLAETIKDMGL 108 (302)
T ss_pred hHHHHHHHHHHCCCceeecCCCCCCcccccCCCEEEEEecCcCcCCCCCcCCccCCCCCCCCCHH-HHHHHHHHHHHCCC
Confidence 34567888999877641 12222223333221 1 34443333344554 69999999999999
Q ss_pred CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceee---cCCC---ccccHHHH
Q 014237 172 NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIV---REDG---VIMNDETV 245 (428)
Q Consensus 172 ~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil---~~~g---~IdND~Tl 245 (428)
+.|.|=++--++..| .| ..-+...|+.||+..|++.|=+ |.+. -.|-+..+ .+.| .--|-+|+
T Consensus 109 kevvLTsv~~ddl~d-~g------~~~l~~li~~I~~~~p~i~Iev---l~~d-~~g~~e~l~~l~~aG~dv~~hnlEt~ 177 (302)
T TIGR00510 109 KYVVITSVDRDDLED-GG------ASHLAECIEAIREKLPNIKIET---LVPD-FRGNIAALDILLDAPPDVYNHNLETV 177 (302)
T ss_pred CEEEEEeecCCCccc-cc------HHHHHHHHHHHHhcCCCCEEEE---eCCc-ccCCHHHHHHHHHcCchhhcccccch
Confidence 999998751111222 11 1247889999999999865422 1111 11212221 1111 11233444
Q ss_pred HHHHH------------HHHHHH-HcCCCeecCCCCCCch------HHHHHHHHHHCCCCCceeechh
Q 014237 246 HQLCK------------QAVSQA-RAGADVVSPSDMMDGR------VGAIRAALDAEGFQHVSIMSYT 294 (428)
Q Consensus 246 ~~Lak------------~Als~A-~AGADiVAPSDMMDGR------V~aIR~aLD~~Gf~~v~IMSYs 294 (428)
+.|.+ ..+..| +++-++..=||||=|- +...=+.|.+.|+..+.|--|-
T Consensus 178 ~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl 245 (302)
T TIGR00510 178 ERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYL 245 (302)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeeccc
Confidence 44432 233333 3445788889999874 3344456778899989988874
No 288
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=46.56 E-value=1e+02 Score=27.20 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=46.8
Q ss_pred ChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 014237 327 NYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
+..+++.... +..|++++= |++.-+++++.+++...+|+....-..+......|.+.|..|
T Consensus 33 ~~~~~~~~~~----~~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~ 96 (232)
T PRK10955 33 DGEQALDLLD----DSIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLTARGSELDRVLGLELGADD 96 (232)
T ss_pred CHHHHHHHhh----cCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHcCCCE
Confidence 5667766442 357998885 566678899999988789999988777888888888888754
No 289
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=46.33 E-value=2.2e+02 Score=28.91 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc----CcCCCCCHHHHHHHHHHHC--CCeEEEeeecccCCCCCCcce
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE----AYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDG 231 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~----A~~~~g~v~rAIr~iK~~~--Pdl~VitDVcLc~YTshGHcG 231 (428)
.+...|+++.+.|+-.|.|==.+.+ +| +|.. -.+.+ -...-|++.++.. +|++|++=+. .|..
T Consensus 89 ~v~~tv~~~~~aG~agi~IEDq~~p-K~--cgh~~g~~lv~~e-e~~~kI~Aa~~a~~~~d~~IiARTD--a~~~----- 157 (285)
T TIGR02317 89 NVARTVREMEDAGAAAVHIEDQVLP-KR--CGHLPGKELVSRE-EMVDKIAAAVDAKRDEDFVIIARTD--ARAV----- 157 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCc-cc--cCCCCCccccCHH-HHHHHHHHHHHhccCCCEEEEEEcC--cccc-----
Confidence 4788899999999999887111100 01 2221 12222 2234456666543 5788876332 2211
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 014237 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (428)
Q Consensus 232 il~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aL 280 (428)
.| =|+++++ +..|++||||+|-+-.+-+ -.+..+.+.+
T Consensus 158 ----~g---~deAI~R----a~ay~~AGAD~vfi~g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 158 ----EG---LDAAIER----AKAYVEAGADMIFPEALTSLEEFRQFAKAV 196 (285)
T ss_pred ----cC---HHHHHHH----HHHHHHcCCCEEEeCCCCCHHHHHHHHHhc
Confidence 12 2556555 7889999999998766554 3344444444
No 290
>PRK05926 hypothetical protein; Provisional
Probab=46.22 E-value=73 Score=33.17 Aligned_cols=85 Identities=25% Similarity=0.405 Sum_probs=55.5
Q ss_pred CCccccCCCCCChHHHHHHHHhchhcCCc-eEEe---cCCC---chHHHHHHHHhhCC-CCeEEEEech-HHHHHHHHHH
Q 014237 316 GDKKTYQMNPANYREALVEAQADESEGAD-ILLV---KPGL---PYLDVIRLLRDKYP-LPIAAYQVSG-EYSMIKAGGA 386 (428)
Q Consensus 316 gDRktYQmdpaN~~EAlrE~~lDi~EGAD-ilMV---KPal---~YLDII~~vk~~~~-lPvaaYqVSG-EYaMIkaAa~ 386 (428)
++.+.|-|++.-..+..+++ +.|+. +.|| .|.+ -|+|+++.+|+.++ +-+.+ .|| ||..++. -
T Consensus 92 ~~~~~~~ls~eeI~~~a~~a----~~G~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a--~s~~Ei~~~~~--~ 163 (370)
T PRK05926 92 GDPKGWFYTPDQLVQSIKEN----PSPITETHIVAGCFPSCNLAYYEELFSKIKQNFPDLHIKA--LTAIEYAYLSK--L 163 (370)
T ss_pred CCcccccCCHHHHHHHHHHH----hcCCCEEEEEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEE--CCHHHHHHHHh--h
Confidence 45667888776555555554 35664 6666 2322 36899999999874 55444 555 7877753 2
Q ss_pred CCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 387 LKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 387 ~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
.|+ ..-|.|..+|.||.|.+-.
T Consensus 164 ~~~-----~~~e~l~~LkeAGl~~~~g 185 (370)
T PRK05926 164 DNL-----PVKEVLQTLKIAGLDSIPG 185 (370)
T ss_pred cCC-----CHHHHHHHHHHcCcCccCC
Confidence 333 3456788999999987664
No 291
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=45.93 E-value=93 Score=30.12 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC--------C----CHHHHHHHHHHH--CCCeEEEeeecccC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN--------G----LVPRTIWLLKDR--YPDLVIYTDVALDP 223 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~--------g----~v~rAIr~iK~~--~Pdl~VitDVcLc~ 223 (428)
.+.+.++.+.+.|+..+=| |+ |- .|+..+.-+-++ | ....-++.+|+. .| +.+|+-. .|
T Consensus 15 ~~~~~~~~l~~~Gad~iel-~i-Pf--sdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p-v~lm~y~--n~ 87 (242)
T cd04724 15 TTLEILKALVEAGADIIEL-GI-PF--SDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP-IVLMGYY--NP 87 (242)
T ss_pred HHHHHHHHHHHCCCCEEEE-CC-CC--CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC-EEEEEec--CH
Confidence 4888999999999998776 74 63 455443322221 1 223355555553 34 3333211 11
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechh
Q 014237 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (428)
Q Consensus 224 YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYs 294 (428)
+-.. | ++ +-.-..+++|+|.|.--|.-=-....+++.+.++|..-+.+++-+
T Consensus 88 ~~~~---------G-------~~---~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~ 139 (242)
T cd04724 88 ILQY---------G-------LE---RFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPT 139 (242)
T ss_pred HHHh---------C-------HH---HHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 1000 0 12 223345788999444333322377778888888888777766643
No 292
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=45.93 E-value=1.2e+02 Score=26.81 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=44.2
Q ss_pred ChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 014237 327 NYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
|..+++.... ++..|+|++- |.+..+++++.+++...+|+....-.++......+.+.|..|
T Consensus 34 ~~~~~~~~~~---~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~~~~~~~~~~~~l~~Ga~d 98 (221)
T PRK10766 34 SGAGMREIMQ---NQHVDLILLDINLPGEDGLMLTRELRSRSTVGIILVTGRTDSIDRIVGLEMGADD 98 (221)
T ss_pred CHHHHHHHHh---cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEECCCcHHHHHHHHHcCCCc
Confidence 4556665443 3468999886 677788999999987789998876555555555667777654
No 293
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=45.83 E-value=4.7e+02 Score=29.19 Aligned_cols=192 Identities=21% Similarity=0.229 Sum_probs=104.9
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTs 226 (428)
.++..|++.+ +.++.++.+.+.|+.++=..|- ..-|..-+ -.+++ --+.+|.|++..|+.-+.+ ||-
T Consensus 12 s~~~~~~~t~-dkl~ia~~L~~~Gv~~IE~~GG---atfd~~~~-f~~e~--~~e~l~~l~~~~~~~~l~~---L~R--- 78 (582)
T TIGR01108 12 SLFATRMRTE-DMLPIAEKLDDVGYWSLEVWGG---ATFDACIR-FLNED--PWERLRELKKALPNTPLQM---LLR--- 78 (582)
T ss_pred ccCCccCCHH-HHHHHHHHHHHcCCCEEEecCC---cccccccc-cCCCC--HHHHHHHHHHhCCCCEEEE---EEc---
Confidence 4556688886 5899999999999999988531 11221100 01122 2468899999889855542 210
Q ss_pred CCcceeecCCCcc-ccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhccccc
Q 014237 227 DGHDGIVREDGVI-MNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (428)
Q Consensus 227 hGHcGil~~~g~I-dND~Tl~~Lak~Als~A~AGADiVAPSDMM---DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafY 302 (428)
|... -|+. --|.-++.-.+.|+ ++|.|+|--.|-+ +.-..+|+.+ .++|+.-..-++|+.
T Consensus 79 -g~N~----~G~~~ypddvv~~~v~~a~---~~Gvd~irif~~lnd~~n~~~~i~~a-k~~G~~v~~~i~~t~------- 142 (582)
T TIGR01108 79 -GQNL----LGYRHYADDVVERFVKKAV---ENGMDVFRIFDALNDPRNLQAAIQAA-KKHGAHAQGTISYTT------- 142 (582)
T ss_pred -cccc----cccccCchhhHHHHHHHHH---HCCCCEEEEEEecCcHHHHHHHHHHH-HHcCCEEEEEEEecc-------
Confidence 1100 0111 12334444555554 5699986433322 3334444333 356764333356643
Q ss_pred cchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch------HHHHHHHHhhCCCCeEEEEech
Q 014237 303 GPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY------LDVIRLLRDKYPLPIAAYQVSG 376 (428)
Q Consensus 303 GPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y------LDII~~vk~~~~lPvaaYqVSG 376 (428)
.|+ .++.-.-+.++++ ++-|||.|-+|=-.-+ -++++.+|+.+++|+. +|--=
T Consensus 143 ~p~-----------------~~~~~~~~~~~~~---~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~-~H~Hn 201 (582)
T TIGR01108 143 SPV-----------------HTLETYLDLAEEL---LEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVH-LHSHA 201 (582)
T ss_pred CCC-----------------CCHHHHHHHHHHH---HHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceE-EEecC
Confidence 121 1222233333333 3459999988743322 4799999999999975 56542
Q ss_pred HH----HHHHHHHHCC
Q 014237 377 EY----SMIKAGGALK 388 (428)
Q Consensus 377 EY----aMIkaAa~~G 388 (428)
-+ +-..+|.++|
T Consensus 202 t~Gla~An~laAveaG 217 (582)
T TIGR01108 202 TTGMAEMALLKAIEAG 217 (582)
T ss_pred CCCcHHHHHHHHHHhC
Confidence 22 3344466766
No 294
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=45.56 E-value=2.2e+02 Score=26.73 Aligned_cols=97 Identities=25% Similarity=0.311 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
..+.++++++++|...|.+-..+. ..|+. ...-+.+=|..+++...++.+.. |+ +.+
T Consensus 70 ~k~~eve~A~~~GAdevdvv~~~g-~~~~~-------~~~~~~~ei~~v~~~~~g~~lkv--------------I~-e~~ 126 (203)
T cd00959 70 VKVAEAREAIADGADEIDMVINIG-ALKSG-------DYEAVYEEIAAVVEACGGAPLKV--------------IL-ETG 126 (203)
T ss_pred HHHHHHHHHHHcCCCEEEEeecHH-HHhCC-------CHHHHHHHHHHHHHhcCCCeEEE--------------EE-ecC
Confidence 578899999999999998843322 11211 11334455666666654433222 11 223
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC------chHHHHHHHHH
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD------GRVGAIRAALD 281 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD------GRV~aIR~aLD 281 (428)
.. +|+.+...++ .-.++|||+|--|-=-- +.|..+++.+.
T Consensus 127 ~l-~~~~i~~a~r---ia~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 127 LL-TDEEIIKACE---IAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred CC-CHHHHHHHHH---HHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC
Confidence 22 2554555555 45789999998872112 44566666654
No 295
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.51 E-value=30 Score=31.39 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceee
Q 014237 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIM 291 (428)
Q Consensus 241 ND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV---~aIR~aLD~~Gf~~v~IM 291 (428)
.|-|.+.+++.|..+ +||+|+=|.||-... ..+.+.|.++|..++.|+
T Consensus 37 ~~v~~e~~v~aa~~~---~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vi 87 (134)
T TIGR01501 37 VLSPQEEFIKAAIET---KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLY 87 (134)
T ss_pred CCCCHHHHHHHHHHc---CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEE
Confidence 578889999888654 999999999997665 556678899999776654
No 296
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=45.17 E-value=25 Score=37.56 Aligned_cols=29 Identities=21% Similarity=0.483 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014237 199 VPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (428)
Q Consensus 199 v~rAIr~iK~~~Pdl~VitDVcLc~YTsh 227 (428)
+.++|+.+|+..||++|+.|-|--|||..
T Consensus 177 I~~~i~~vk~~~p~~iifVDNCYGEFvE~ 205 (403)
T PF06838_consen 177 IKEIIKFVKEINPDVIIFVDNCYGEFVET 205 (403)
T ss_dssp HHHHHHHHHHH-TTSEEEEE-TTTTTTSS
T ss_pred HHHHHHHHHhhCCCeEEEEeCCcceeccc
Confidence 45899999999999999999999999754
No 297
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=45.12 E-value=1.1e+02 Score=33.44 Aligned_cols=99 Identities=21% Similarity=0.169 Sum_probs=56.9
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEe-------ecC-----------CCCCCCcccCc----CcCCCCCHHHHHHHHH
Q 014237 150 CYRLGWRHGLVQEVAKARDVGVNSVVLF-------PKV-----------PDALKSPTGDE----AYNDNGLVPRTIWLLK 207 (428)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LF-------gvi-----------~~~~KD~~Gs~----A~~~~g~v~rAIr~iK 207 (428)
+.....+..+.+.++.+.+.++..+.+- |+| |...||+.|.- +.+.+....|+-.+++
T Consensus 173 ~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~~~~ra~~Lv~ 252 (502)
T PRK07107 173 LVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRDYAERVPALVE 252 (502)
T ss_pred eEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccChhhHHHHHHHHHH
Confidence 3333444457777777888888876442 111 22356767765 5555444555555444
Q ss_pred HHCCCeEEEeeecccCCCCCCcceeec----------------CCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014237 208 DRYPDLVIYTDVALDPYSSDGHDGIVR----------------EDGVIMNDETVHQLCKQAVSQARAGADVV 263 (428)
Q Consensus 208 ~~~Pdl~VitDVcLc~YTshGHcGil~----------------~~g~IdND~Tl~~Lak~Als~A~AGADiV 263 (428)
+--|+++| + ++|||.-.+- .-|.|.. .++|....+||||.|
T Consensus 253 -aGvd~i~v-----d--~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t-------~e~a~~li~aGAd~I 309 (502)
T PRK07107 253 -AGADVLCI-----D--SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVD-------REGFRYLAEAGADFV 309 (502)
T ss_pred -hCCCeEee-----c--CcccccHHHHHHHHHHHHhCCCCceEEeccccC-------HHHHHHHHHcCCCEE
Confidence 55677664 3 8999953221 0122222 345666678999997
No 298
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=44.92 E-value=41 Score=32.81 Aligned_cols=108 Identities=24% Similarity=0.357 Sum_probs=69.8
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccch
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPF 305 (428)
++||.||- +.++.+.+ .+.++|+|-+...+.+ +=|..-++.+.+..+ .+++|+.=..
T Consensus 14 ~~dg~id~-~~~~~~i~---~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------- 78 (289)
T PF00701_consen 14 NADGSIDE-DALKRLID---FLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGVG---------- 78 (289)
T ss_dssp ETTSSB-H-HHHHHHHH---HHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEEE----------
T ss_pred CCCcCcCH-HHHHHHHH---HHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecCc----------
Confidence 45677763 33333333 4457899988776653 345666667777665 4677765322
Q ss_pred hhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEec
Q 014237 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVS 375 (428)
Q Consensus 306 RdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqVS 375 (428)
..+.+|++..++.=.+-|||.+||=|-..| .|=.+++.+..++|++.||--
T Consensus 79 -------------------~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 79 -------------------ANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp -------------------SSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred -------------------chhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 115777777777767789999998753222 566677888899999999963
No 299
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=44.83 E-value=3.7e+02 Score=27.87 Aligned_cols=118 Identities=17% Similarity=0.305 Sum_probs=77.4
Q ss_pred eeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCC---------CCcccCcCcCCCCCHHH
Q 014237 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDAL---------KSPTGDEAYNDNGLVPR 201 (428)
Q Consensus 131 ~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~---------KD~~Gs~A~~~~g~v~r 201 (428)
.||||.=.+ .++ ++.+.++.+.+.|...|+++-.+-+.. +-..+.-.++---+-++
T Consensus 162 ~Pv~vKl~P--------------~~~-di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~ 226 (310)
T COG0167 162 VPVFVKLAP--------------NIT-DIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPI 226 (310)
T ss_pred CceEEEeCC--------------CHH-HHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHH
Confidence 799998543 244 588999999999999999976433111 11234555666667788
Q ss_pred HHHHHHHHC----CCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC-CCCCC-c----
Q 014237 202 TIWLLKDRY----PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP-SDMMD-G---- 271 (428)
Q Consensus 202 AIr~iK~~~----Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAP-SDMMD-G---- 271 (428)
|+|.|++-+ +++-||. = |=|.+ ++-|+.+-.|||++|-= |.+|- |
T Consensus 227 al~~v~~l~~~~~~~ipIIG-----------v-------GGI~s-------~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~ 281 (310)
T COG0167 227 ALRVVAELYKRLGGDIPIIG-----------V-------GGIET-------GEDALEFILAGASAVQVGTALIYKGPGIV 281 (310)
T ss_pred HHHHHHHHHHhcCCCCcEEE-----------e-------cCcCc-------HHHHHHHHHcCCchheeeeeeeeeCchHH
Confidence 888888554 2354542 2 22332 45688899999998742 22332 2
Q ss_pred --hHHHHHHHHHHCCCCCc
Q 014237 272 --RVGAIRAALDAEGFQHV 288 (428)
Q Consensus 272 --RV~aIR~aLD~~Gf~~v 288 (428)
-+..|.+.|+++||+++
T Consensus 282 ~~I~~~l~~~l~~~g~~si 300 (310)
T COG0167 282 KEIIKGLARWLEEKGFESI 300 (310)
T ss_pred HHHHHHHHHHHHHcCCCCH
Confidence 35667888999999764
No 300
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=44.73 E-value=18 Score=36.26 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.5
Q ss_pred CchhhHHHHHHHHHHHhcccEeeh
Q 014237 390 IDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
++..+.|.+.+..+.+||||+|.|
T Consensus 42 ~~~Pe~V~~vH~~yl~AGadiI~T 65 (304)
T PRK09485 42 LENPELIYQVHLDYFRAGADCAIT 65 (304)
T ss_pred ccChHHHHHHHHHHHHhCCCEEEe
Confidence 677789999999999999999865
No 301
>PRK08999 hypothetical protein; Provisional
Probab=44.62 E-value=76 Score=31.13 Aligned_cols=63 Identities=27% Similarity=0.301 Sum_probs=44.5
Q ss_pred CChHHHHHHHHhchhcCCceEEe--------cCCCch--HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhH
Q 014237 326 ANYREALVEAQADESEGADILLV--------KPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV 395 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMV--------KPal~Y--LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~ 395 (428)
.|.+|+.+ + .++|||.+.+ ||+.+- +|.++++++.+++||+| -|-|+.+
T Consensus 234 h~~~~~~~-a---~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~A---------------iGGI~~~-- 292 (312)
T PRK08999 234 HDAEELAR-A---QRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYA---------------LGGLGPG-- 292 (312)
T ss_pred CCHHHHHH-H---HhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------ECCCCHH--
Confidence 46666433 3 2579999986 544333 68899999999999988 4666654
Q ss_pred HHHHHHHHHHhcccEee
Q 014237 396 MMESLMCLRRAGADIIL 412 (428)
Q Consensus 396 vlEsL~~~kRAGAd~Ii 412 (428)
.+..++.+||+.|-
T Consensus 293 ---~~~~~~~~g~~gva 306 (312)
T PRK08999 293 ---DLEEAREHGAQGIA 306 (312)
T ss_pred ---HHHHHHHhCCCEEE
Confidence 44567888998863
No 302
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=44.62 E-value=94 Score=31.47 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=26.8
Q ss_pred hhcCCceEEecCC--------CchHHHHHHHHhhCCCCeEE
Q 014237 339 ESEGADILLVKPG--------LPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 339 i~EGADilMVKPa--------l~YLDII~~vk~~~~lPvaa 371 (428)
.+.|+|.|.|=+. .+.+|.|+++|+.+++||.+
T Consensus 159 e~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~ 199 (321)
T PRK10415 159 EDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIA 199 (321)
T ss_pred HHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEE
Confidence 3679999976542 26789999999999999876
No 303
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=44.58 E-value=41 Score=35.76 Aligned_cols=60 Identities=28% Similarity=0.501 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc-----CcC-----CCCCHHHHHHHHHHHCCCeEE-Eee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE-----AYN-----DNGLVPRTIWLLKDRYPDLVI-YTD 218 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~-----A~~-----~~g~v~rAIr~iK~~~Pdl~V-itD 218 (428)
.+...+++|.++|.+.|+++++ |+--.-+.... .+| -|..+++.+..+++++|++.| +.|
T Consensus 262 ~~~~~l~~Ly~lGARk~vV~nl-pPlGC~P~~~~~~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D 332 (408)
T PRK15381 262 QQIDDIEKIISGGVNNVLVMGI-PDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYE 332 (408)
T ss_pred HHHHHHHHHHHcCCcEEEEeCC-CCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4777889999999999999995 54333332211 111 355777888999999998644 444
No 304
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=44.57 E-value=46 Score=32.18 Aligned_cols=50 Identities=14% Similarity=0.368 Sum_probs=37.7
Q ss_pred CCCCCChHHHHHHHHhchh-cCCceEEecCCCc-----hHHHHHHHHhhCCCCeEEE
Q 014237 322 QMNPANYREALVEAQADES-EGADILLVKPGLP-----YLDVIRLLRDKYPLPIAAY 372 (428)
Q Consensus 322 QmdpaN~~EAlrE~~lDi~-EGADilMVKPal~-----YLDII~~vk~~~~lPvaaY 372 (428)
.+||.-. |.+.+....+. -|+|.+||=-..- -.++++.+|+.+++|++-.
T Consensus 4 ~iDP~k~-e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilf 59 (205)
T TIGR01769 4 LIDPEKS-DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILF 59 (205)
T ss_pred ccCCCcH-HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEE
Confidence 4788877 77776666666 4599999976641 2557899999999999864
No 305
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=44.52 E-value=90 Score=31.02 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=33.0
Q ss_pred CCCChHHHHHHHHhchhcCCceEEecCCCch------HHHHHHHHhhCCCCeEEEEe
Q 014237 324 NPANYREALVEAQADESEGADILLVKPGLPY------LDVIRLLRDKYPLPIAAYQV 374 (428)
Q Consensus 324 dpaN~~EAlrE~~lDi~EGADilMVKPal~Y------LDII~~vk~~~~lPvaaYqV 374 (428)
||....++++++. +.|+|.|.+==+-+- .++|+++++.+++||.+=.|
T Consensus 127 ~~~~~~~~i~~~~---~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v 180 (299)
T cd02809 127 DREITEDLLRRAE---AAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGI 180 (299)
T ss_pred CHHHHHHHHHHHH---HcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeec
Confidence 3444455554443 479998876433333 69999999999999987655
No 306
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=44.52 E-value=1.3e+02 Score=30.48 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=53.2
Q ss_pred ccCCCCCChHHHHHHHHhchhcCCceEE----------ecCCC---------chHHHHHHHHhhCCCCeEEEEechHHHH
Q 014237 320 TYQMNPANYREALVEAQADESEGADILL----------VKPGL---------PYLDVIRLLRDKYPLPIAAYQVSGEYSM 380 (428)
Q Consensus 320 tYQmdpaN~~EAlrE~~lDi~EGADilM----------VKPal---------~YLDII~~vk~~~~lPvaaYqVSGEYaM 380 (428)
.-|+--.+.++..+.+..=.+.|+|+|= +|.+. .=.+|++.+++..++||.+.--
T Consensus 68 ~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR------ 141 (321)
T PRK10415 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR------ 141 (321)
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE------
Confidence 3566444555544444332457898874 33321 1257888899988999886654
Q ss_pred HHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 381 IKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 381 IkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
.||-+...-..|....+..+|+|.|.
T Consensus 142 ------~G~~~~~~~~~~~a~~le~~G~d~i~ 167 (321)
T PRK10415 142 ------TGWAPEHRNCVEIAQLAEDCGIQALT 167 (321)
T ss_pred ------ccccCCcchHHHHHHHHHHhCCCEEE
Confidence 57866554567888888999999873
No 307
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=44.46 E-value=43 Score=32.43 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=50.5
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTs 226 (428)
.+...|++.+ .+.+.++++.+.|+..|.| +|..|. ..|+. +.+-++.+|+.+| + +..-
T Consensus 130 ~~~~~~~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~--~~P~~-v~~lv~~l~~~~~-~---------~l~~ 187 (259)
T cd07939 130 AEDASRADPD-FLIEFAEVAQEAGADRLRF--------ADTVGI--LDPFT-TYELIRRLRAATD-L---------PLEF 187 (259)
T ss_pred eccCCCCCHH-HHHHHHHHHHHCCCCEEEe--------CCCCCC--CCHHH-HHHHHHHHHHhcC-C---------eEEE
Confidence 3455566765 5788888888888776544 234442 22222 4456777777776 2 3345
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014237 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (428)
Q Consensus 227 hGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM 268 (428)
|+|+-. | +. ..-++.-.++||++|=-|=.
T Consensus 188 H~Hn~~----G-------la--~An~laAi~aG~~~vd~s~~ 216 (259)
T cd07939 188 HAHNDL----G-------LA--TANTLAAVRAGATHVSVTVN 216 (259)
T ss_pred EecCCC----C-------hH--HHHHHHHHHhCCCEEEEecc
Confidence 888421 2 11 12345556899998855544
No 308
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=44.39 E-value=3.9e+02 Score=29.37 Aligned_cols=145 Identities=14% Similarity=0.043 Sum_probs=78.9
Q ss_pred ecccCCCCCCcc--e-eecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCCCCCc--hHHHHHHHHHHCCCCCcee
Q 014237 219 VALDPYSSDGHD--G-IVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSDMMDG--RVGAIRAALDAEGFQHVSI 290 (428)
Q Consensus 219 VcLc~YTshGHc--G-il~~~g~IdND~Tl~~Lak~Als~A~AGADiVA---PSDMMDG--RV~aIR~aLD~~Gf~~v~I 290 (428)
..+|..---+|. = |+ ++|.+-..++.+.++|..+.++|||||= .|. -+| ||.-+=++|.+. + ++
T Consensus 138 ~~i~~~~i~~~~p~~~v~---aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st-~p~~~~v~~~V~~l~~~-~-~~-- 209 (499)
T TIGR00284 138 FRIGSLKIPLKPPPLRVV---AEIPPTVAEDGIEGLAARMERDGADMVALGTGSF-DDDPDVVKEKVKTALDA-L-DS-- 209 (499)
T ss_pred hhccCcCCCCCCCCeEEE---EEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcC-CCcHHHHHHHHHHHHhh-C-CC--
Confidence 345555555664 2 44 5787777888899999999999999983 332 122 121111122111 0 11
Q ss_pred echhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeE
Q 014237 291 MSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIA 370 (428)
Q Consensus 291 MSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPva 370 (428)
.-.+|-.|..++...+ +.|||||.===+. -+|-+-.+...++.|++
T Consensus 210 -----------------------------pISIDT~~~~v~eaAL----~aGAdiINsVs~~-~~d~~~~l~a~~g~~vV 255 (499)
T TIGR00284 210 -----------------------------PVIADTPTLDELYEAL----KAGASGVIMPDVE-NAVELASEKKLPEDAFV 255 (499)
T ss_pred -----------------------------cEEEeCCCHHHHHHHH----HcCCCEEEECCcc-chhHHHHHHHHcCCeEE
Confidence 1223334555443333 3399988732222 35655565666777777
Q ss_pred EEE--echHH----HHHHHHHHCCC--------Cch-hhHHHHHHHHHHH
Q 014237 371 AYQ--VSGEY----SMIKAGGALKM--------IDE-QRVMMESLMCLRR 405 (428)
Q Consensus 371 aYq--VSGEY----aMIkaAa~~G~--------iD~-~~~vlEsL~~~kR 405 (428)
.-+ ....| ..++.|.++|. ++. ..-++++|..|++
T Consensus 256 lm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~~~~l~~sL~~l~~ 305 (499)
T TIGR00284 256 VVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSPPLLGLLESIIRFRR 305 (499)
T ss_pred EEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCcchHHHHHHHHHHHH
Confidence 755 23333 34555677776 111 1236777777763
No 309
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=44.08 E-value=36 Score=34.53 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=54.0
Q ss_pred chhhhhcCCCCC-CCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCC--CCeEEEEechHHHH
Q 014237 304 PFREALDSNPRF-GDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP--LPIAAYQVSGEYSM 380 (428)
Q Consensus 304 PFRdAa~Sap~f-gDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~--lPvaaYqVSGEYaM 380 (428)
.+++|+..+-++ +.++ =++...|.+||...+ +-|||+||.- -.-.+-++++.+..+ -|=..-.+||
T Consensus 175 ~i~~av~~~r~~~~~~k-IeVEv~tleqa~ea~----~agaDiI~LD--n~~~e~l~~av~~~~~~~~~~~leaSG---- 243 (284)
T PRK06096 175 DWSGAINQLRRHAPEKK-IVVEADTPKEAIAAL----RAQPDVLQLD--KFSPQQATEIAQIAPSLAPHCTLSLAG---- 243 (284)
T ss_pred cHHHHHHHHHHhCCCCC-EEEECCCHHHHHHHH----HcCCCEEEEC--CCCHHHHHHHHHHhhccCCCeEEEEEC----
Confidence 566555443332 2344 777888888876664 6899999994 333444444443321 1223344544
Q ss_pred HHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 014237 381 IKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 381 IkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYf 415 (428)
-|+ +|.+..+...|.|+|.|-+
T Consensus 244 --------GI~-----~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 244 --------GIN-----LNTLKNYADCGIRLFITSA 265 (284)
T ss_pred --------CCC-----HHHHHHHHhcCCCEEEECc
Confidence 455 5677889999999998754
No 310
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=44.04 E-value=38 Score=32.56 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=31.4
Q ss_pred CCCCChHHHHHHHHhchhcCCceEEecCCCch-----HHHHHHHHhh
Q 014237 323 MNPANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDK 364 (428)
Q Consensus 323 mdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-----LDII~~vk~~ 364 (428)
+|+.|..|+++.+. +-|.+++.+|-+.+. +++|+.+|+.
T Consensus 9 lD~~~~~~~l~~~~---~~~~~~~~ikvg~~~f~~~G~~~i~~l~~~ 52 (230)
T PRK00230 9 LDFPSKEEALAFLD---QLDPAVLFVKVGMELFTAGGPQFVRELKQR 52 (230)
T ss_pred cCCCCHHHHHHHHH---hcCCcccEEEEcHHHHHhcCHHHHHHHHhc
Confidence 68889999998775 357788889988754 7889999986
No 311
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=43.84 E-value=31 Score=35.63 Aligned_cols=52 Identities=29% Similarity=0.518 Sum_probs=42.6
Q ss_pred ecCCCch---HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 014237 348 VKPGLPY---LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 411 (428)
Q Consensus 348 VKPal~Y---LDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~I 411 (428)
|.|+--| |++++.+|+.. .+|+ |.+...|+=..+.-++|+|.-++.+|.|++
T Consensus 190 VRp~A~Y~~SL~~L~~~k~~~P~i~T------------KSgiMlGLGEt~~Ev~e~m~DLr~~gvdil 245 (306)
T COG0320 190 VRPGATYERSLSLLERAKELGPDIPT------------KSGLMVGLGETDEEVIEVMDDLRSAGVDIL 245 (306)
T ss_pred cCCCCcHHHHHHHHHHHHHhCCCccc------------ccceeeecCCcHHHHHHHHHHHHHcCCCEE
Confidence 4455555 99999999987 4664 666778888888999999999999999986
No 312
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=43.81 E-value=1.7e+02 Score=29.74 Aligned_cols=182 Identities=14% Similarity=0.145 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHHHcC--CCeEEEeecCCCCCCCcccC-c---CcCCCCCHHHHHHHHH----------------------
Q 014237 156 RHGLVQEVAKARDVG--VNSVVLFPKVPDALKSPTGD-E---AYNDNGLVPRTIWLLK---------------------- 207 (428)
Q Consensus 156 ~~~l~~~v~~~~~~G--I~sv~LFgvi~~~~KD~~Gs-~---A~~~~g~v~rAIr~iK---------------------- 207 (428)
|...++.+.++.+.| +-..+|||. +...|..+. + +-++.--.++|+..+|
T Consensus 10 d~~~l~av~~a~~~g~~~~~~ilvg~--~~~~~~~~~~~ii~~~~~~~aa~~av~lv~~G~aD~lmkG~i~T~~~lravl 87 (271)
T TIGR02709 10 QPEILQLVKKALKEAEQPLQFIVFDT--NENLDTENLWKYVHCSDEAAVAQEAVSLVATGQAQILLKGIIQTHTLLKEML 87 (271)
T ss_pred CHHHHHHHHHHHHcCCceeEEEEEcC--cccCCcccCeeEEECCChHHHHHHHHHHHHCCCCCEEEcCCcCcHHHHHHHH
Confidence 456889999999999 577888884 333333211 1 1111112222222222
Q ss_pred ---HHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCC
Q 014237 208 ---DRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEG 284 (428)
Q Consensus 208 ---~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~G 284 (428)
.-.|.--+++-+++.+-.. |--++-.|.-|+-+.|++++++++..-++ ..| .-|
T Consensus 88 ~~~~gl~~~~~~S~v~i~~~p~--~~~l~~tD~~vn~~P~~eqk~~I~~nA~~-----------------~ar----~lG 144 (271)
T TIGR02709 88 KSEHQLKNKPILSHVAMVELPA--GKTFLLTDCAMNIAPTQATLIEIVENAKE-----------------VAQ----KLG 144 (271)
T ss_pred HHHcCCCCCCeeEEEEEEEecC--CCEEEEECCCccCCcCHHHHHHHHHHHHH-----------------HHH----HcC
Confidence 1234445677776655433 22333346788889999999999776544 223 238
Q ss_pred C--CCceeechhhhhccccccch-hhhh------cCCCCCCCccccCCCCCChHHHHHHH--HhchhcCCceEEecCCCc
Q 014237 285 F--QHVSIMSYTAKYASSFYGPF-REAL------DSNPRFGDKKTYQMNPANYREALVEA--QADESEGADILLVKPGLP 353 (428)
Q Consensus 285 f--~~v~IMSYsaKyASafYGPF-RdAa------~Sap~fgDRktYQmdpaN~~EAlrE~--~lDi~EGADilMVKPal~ 353 (428)
+ -+|+++|||.++... +|- .++. +..|.+-----.|+|-+=..|+.+.- .-.+...||+|++ |.+-
T Consensus 145 ie~PkVAlLS~se~~s~~--~~st~~a~~l~~~~~~~~~~~vdGpl~~D~Al~~e~a~~K~~~s~vaG~AniLI~-Pnle 221 (271)
T TIGR02709 145 LHHPKIALLSAAENFNPK--MPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVV-PTID 221 (271)
T ss_pred CCCCeEEEEecccCCCCC--CchHHHHHHHHHHHHhCCCCEEEecCchhhhcCHHHHHhhCCCCCCCCcCCEEEc-CChH
Confidence 7 679999999887443 232 2221 11132211234666766455544422 2235577888776 7777
Q ss_pred hHHHHHHHHhhC
Q 014237 354 YLDVIRLLRDKY 365 (428)
Q Consensus 354 YLDII~~vk~~~ 365 (428)
-=.|+.+.-..+
T Consensus 222 aGNi~yK~l~~~ 233 (271)
T TIGR02709 222 VGNCLYKSLTLF 233 (271)
T ss_pred HHHHHHHHHHHh
Confidence 667777654444
No 313
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=43.50 E-value=2.2e+02 Score=26.56 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=23.1
Q ss_pred hhcCCceEEec--CCCc--hHHHHHHHHhhCCCCeEE
Q 014237 339 ESEGADILLVK--PGLP--YLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 339 i~EGADilMVK--Pal~--YLDII~~vk~~~~lPvaa 371 (428)
.+.|||.|-|= ++.. =++.++.+|+..++||..
T Consensus 41 ~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~ 77 (217)
T cd00331 41 EKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLR 77 (217)
T ss_pred HHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEE
Confidence 45799999762 1111 347888888888999984
No 314
>PRK08508 biotin synthase; Provisional
Probab=43.45 E-value=70 Score=31.57 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=44.4
Q ss_pred cccC-CCCCChHHHHHHHHhchhcCCceE-Ee----cC---C-CchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHC
Q 014237 319 KTYQ-MNPANYREALVEAQADESEGADIL-LV----KP---G-LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGAL 387 (428)
Q Consensus 319 ktYQ-mdpaN~~EAlrE~~lDi~EGADil-MV----KP---a-l~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~ 387 (428)
+.|. ++|....|.++++ .+.|+.=+ +| .+ . --|+|+++.+|+.+ .+.+.+- .
T Consensus 35 ~~y~~~s~eeI~~~a~~a---~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s--------------~ 97 (279)
T PRK08508 35 KRYKRKDIEQIVQEAKMA---KANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIAC--------------N 97 (279)
T ss_pred ccccCCCHHHHHHHHHHH---HHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEec--------------C
Confidence 3565 4554444444443 34687544 54 11 1 24689999999987 5655432 5
Q ss_pred CCCchhhHHHHHHHHHHHhcccEee
Q 014237 388 KMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 388 G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
|+++ .|.|..+|.||+|.+-
T Consensus 98 G~~~-----~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 98 GTAS-----VEQLKELKKAGIFSYN 117 (279)
T ss_pred CCCC-----HHHHHHHHHcCCCEEc
Confidence 6665 5677788888887764
No 315
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=43.40 E-value=1.2e+02 Score=30.96 Aligned_cols=84 Identities=29% Similarity=0.394 Sum_probs=52.9
Q ss_pred ccccCCCCCChHHHHHHHHhchhcCCceEEe----cCCC---chHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCC
Q 014237 318 KKTYQMNPANYREALVEAQADESEGADILLV----KPGL---PYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKM 389 (428)
Q Consensus 318 RktYQmdpaN~~EAlrE~~lDi~EGADilMV----KPal---~YLDII~~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~ 389 (428)
...|.|++ +|.+.++..-.+.|+.-+.. .|.+ -|+++++.+|+.++ +.+.+ ....|+..+.. -.|.
T Consensus 74 ~~~y~l~~---eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~-~~~~ei~~~~~--~~g~ 147 (351)
T TIGR03700 74 PGAYAMSL---EEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKA-FTAVEIHHFSK--ISGL 147 (351)
T ss_pred cccCCCCH---HHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEe-CCHHHHHHHHH--HcCC
Confidence 34777766 55555554444577754432 3433 46899999999984 66665 34556665542 3465
Q ss_pred CchhhHHHHHHHHHHHhcccEee
Q 014237 390 IDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
.+ -|.|..+|.||.|.+.
T Consensus 148 ~~-----~e~l~~LkeAGld~~~ 165 (351)
T TIGR03700 148 PT-----EEVLDELKEAGLDSMP 165 (351)
T ss_pred CH-----HHHHHHHHHcCCCcCC
Confidence 54 3567889999999775
No 316
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.24 E-value=42 Score=32.87 Aligned_cols=66 Identities=30% Similarity=0.497 Sum_probs=48.0
Q ss_pred ceeeEEEeeCCC---CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHH
Q 014237 129 FVYPLFIHEGEE---DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWL 205 (428)
Q Consensus 129 LI~PlFV~eg~~---~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~ 205 (428)
+|-|-|..+-.+ ...|..+||++ -..|+..++++|.+-|-|||. . . . | ..-|+.
T Consensus 95 iVsP~~~~~v~~~~~~~~i~~iPG~~-------TpsEi~~A~~~Ga~~vKlFPA-~-~---------~---G--~~~ika 151 (222)
T PRK07114 95 IVTPLFNPDIAKVCNRRKVPYSPGCG-------SLSEIGYAEELGCEIVKLFPG-S-V---------Y---G--PGFVKA 151 (222)
T ss_pred EECCCCCHHHHHHHHHcCCCEeCCCC-------CHHHHHHHHHCCCCEEEECcc-c-c---------c---C--HHHHHH
Confidence 344554443322 45899999992 467899999999999999994 1 1 1 3 567999
Q ss_pred HHHHCCCeEEEe
Q 014237 206 LKDRYPDLVIYT 217 (428)
Q Consensus 206 iK~~~Pdl~Vit 217 (428)
||.-||++-+|.
T Consensus 152 l~~p~p~i~~~p 163 (222)
T PRK07114 152 IKGPMPWTKIMP 163 (222)
T ss_pred HhccCCCCeEEe
Confidence 999999877664
No 317
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=43.24 E-value=43 Score=32.49 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEE---eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~L---Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTsh 227 (428)
++++.+ .+.+.++++.+.|+..|.| +|...+ .-+.+-++.+|+.+|.+ +..-|
T Consensus 136 ~~~~~~-~~~~~~~~~~~~G~d~i~l~DT~G~~~P--------------~~v~~lv~~l~~~~~~~---------~l~~H 191 (263)
T cd07943 136 HMASPE-ELAEQAKLMESYGADCVYVTDSAGAMLP--------------DDVRERVRALREALDPT---------PVGFH 191 (263)
T ss_pred cCCCHH-HHHHHHHHHHHcCCCEEEEcCCCCCcCH--------------HHHHHHHHHHHHhCCCc---------eEEEE
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014237 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (428)
Q Consensus 228 GHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiV 263 (428)
+|+ |+..=..-++.-.+||||+|
T Consensus 192 ~Hn-------------~~GlA~AN~laAi~aGa~~v 214 (263)
T cd07943 192 GHN-------------NLGLAVANSLAAVEAGATRI 214 (263)
T ss_pred ecC-------------CcchHHHHHHHHHHhCCCEE
No 318
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=43.24 E-value=1.2e+02 Score=27.88 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=48.5
Q ss_pred CChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 014237 326 ANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
.|..||+..+. +...|+|++= |++.-+++++.+++.. +.|+....-..+...+..+.+.|..+
T Consensus 37 ~~~~~al~~~~---~~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~iivls~~~~~~~~~~al~~Ga~~ 103 (225)
T PRK10046 37 GNLAQARMMIE---RFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFD 103 (225)
T ss_pred CCHHHHHHHHH---hcCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCccE
Confidence 47778877664 4678999875 7777889999998854 68898887777777888888888653
No 319
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=42.93 E-value=93 Score=31.23 Aligned_cols=52 Identities=12% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHH------HHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeech
Q 014237 242 DETVHQLCKQAVSQ------ARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY 293 (428)
Q Consensus 242 D~Tl~~Lak~Als~------A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSY 293 (428)
+.++..+.++..-. .+--..++.++-..+|-+..||+.|...|++-+.+..+
T Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~ 188 (399)
T cd00316 131 DAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDG 188 (399)
T ss_pred HHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCC
Confidence 45555555554421 01124455555555556666666666666655555554
No 320
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=42.52 E-value=55 Score=32.19 Aligned_cols=82 Identities=18% Similarity=0.320 Sum_probs=52.6
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHc 230 (428)
+|+..+ .+++.++++.+.|+..|.| +|..|. ..|.. +.+-++.+|+++|++ +..-|+|+
T Consensus 146 ~~~~~~-~~~~~~~~~~~~g~~~i~l--------~DT~G~--~~P~~-v~~lv~~l~~~~~~~---------~l~~H~Hn 204 (273)
T cd07941 146 YKANPE-YALATLKAAAEAGADWLVL--------CDTNGG--TLPHE-IAEIVKEVRERLPGV---------PLGIHAHN 204 (273)
T ss_pred CCCCHH-HHHHHHHHHHhCCCCEEEE--------ecCCCC--CCHHH-HHHHHHHHHHhCCCC---------eeEEEecC
Confidence 466665 5888899999999987654 334552 23333 567888999999873 23458885
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014237 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (428)
Q Consensus 231 Gil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPS 266 (428)
-. | .=..-++.-.++||+.|=-|
T Consensus 205 d~----G---------la~An~laA~~aGa~~id~s 227 (273)
T cd07941 205 DS----G---------LAVANSLAAVEAGATQVQGT 227 (273)
T ss_pred CC----C---------cHHHHHHHHHHcCCCEEEEe
Confidence 32 1 11223455568999988544
No 321
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=42.43 E-value=1.3e+02 Score=29.44 Aligned_cols=89 Identities=13% Similarity=0.230 Sum_probs=52.0
Q ss_pred hHHHHHHHHhchhcCCceE------EecCCCc-hHHHHHHHHhh-CCCCeEE----------EEech-HH-HHHHHHHHC
Q 014237 328 YREALVEAQADESEGADIL------LVKPGLP-YLDVIRLLRDK-YPLPIAA----------YQVSG-EY-SMIKAGGAL 387 (428)
Q Consensus 328 ~~EAlrE~~lDi~EGADil------MVKPal~-YLDII~~vk~~-~~lPvaa----------YqVSG-EY-aMIkaAa~~ 387 (428)
..|.+......-.++||+| +-++... ..++++.+++. .++|+.. |+.|- || ..++.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~ 95 (238)
T PRK13575 16 IEETLIQKINHRIDAIDIIELRIDQWENVTVDQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFTNDLYLNLLSDLANI 95 (238)
T ss_pred cchhHHHHHHhcCCCCCEEEEEeccccCCCHHHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCCCHHHHHHHHHHHHHh
Confidence 4555444444446788887 2222222 23477777775 4677643 33432 23 455666655
Q ss_pred C---CCchh-------hHHHHHHHHHHHhcccEeehhcH
Q 014237 388 K---MIDEQ-------RVMMESLMCLRRAGADIILTYFA 416 (428)
Q Consensus 388 G---~iD~~-------~~vlEsL~~~kRAGAd~IiTYfA 416 (428)
+ |+|-+ +.+-|.+..+++.|..+|++|+-
T Consensus 96 ~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~ 134 (238)
T PRK13575 96 NGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHN 134 (238)
T ss_pred CCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCC
Confidence 4 55554 33455566778899999999993
No 322
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=42.33 E-value=38 Score=32.73 Aligned_cols=71 Identities=20% Similarity=0.378 Sum_probs=50.0
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe--e
Q 014237 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT--D 218 (428)
Q Consensus 141 ~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit--D 218 (428)
+..|..+||+. -..|+..+++.|.+.|-|||. . . .|- +.-|+.||.-||++-+|. -
T Consensus 99 ~~~i~~iPG~~-------TptEi~~A~~~Ga~~vKlFPA-~-~----~GG---------~~yikal~~plp~i~~~ptGG 156 (204)
T TIGR01182 99 DHGIPIIPGVA-------TPSEIMLALELGITALKLFPA-E-V----SGG---------VKMLKALAGPFPQVRFCPTGG 156 (204)
T ss_pred HcCCcEECCCC-------CHHHHHHHHHCCCCEEEECCc-h-h----cCC---------HHHHHHHhccCCCCcEEecCC
Confidence 35789999992 467899999999999999994 2 1 110 356899999999877664 1
Q ss_pred e---cccCCCCCCcceee
Q 014237 219 V---ALDPYSSDGHDGIV 233 (428)
Q Consensus 219 V---cLc~YTshGHcGil 233 (428)
| .+-+|-..|..++.
T Consensus 157 V~~~N~~~~l~aGa~~vg 174 (204)
T TIGR01182 157 INLANVRDYLAAPNVACG 174 (204)
T ss_pred CCHHHHHHHHhCCCEEEE
Confidence 2 34455555665554
No 323
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=42.21 E-value=2.1e+02 Score=26.42 Aligned_cols=116 Identities=19% Similarity=0.151 Sum_probs=63.5
Q ss_pred cCCCCCCchHHHHHHHHHHCCC--CCceeechhhhhccccccchhhhhcCCCCCCCccccCC--CCCChHHHHHHHHhch
Q 014237 264 SPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQM--NPANYREALVEAQADE 339 (428)
Q Consensus 264 APSDMMDGRV~aIR~aLD~~Gf--~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQm--dpaN~~EAlrE~~lDi 339 (428)
.+.++-++-+..+-+.|.+.|. ..+.+.||.-..... +|+. .|.+ +..|-. .+....+.++
T Consensus 109 ~~~~~~~~~~~~v~~~l~~~~~~~~~v~~~Sf~~~~l~~----~~~~---~p~~--~~~~l~~~~~~~~~~~~~------ 173 (229)
T cd08562 109 PDPGDEALTARVVAAALRELWPHASKLLLSSFSLEALRA----ARRA---APEL--PLGLLFDTLPADWLELLA------ 173 (229)
T ss_pred CCCCccHHHHHHHHHHHHHhcCCcCCEEEECCCHHHHHH----HHHh---CCCC--cEEEEecCCCcCHHHHHH------
Confidence 4454433445567777777776 557787775543322 2332 2332 111111 1212222222
Q ss_pred hcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 014237 340 SEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 340 ~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYf 415 (428)
+-|++.+-+.-....-+.|+.+++. +++|.+|-|-.+ |.+.-+.+.|.|.|||-|
T Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~-g~~v~~wTvn~~--------------------~~~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 174 ALGAVSIHLNYRGLTEEQVKALKDA-GYKLLVYTVNDP--------------------ARAAELLEWGVDAIFTDR 228 (229)
T ss_pred HcCCeEEecChhhCCHHHHHHHHHC-CCEEEEEeCCCH--------------------HHHHHHHHCCCCEEEcCC
Confidence 2356655443333345778887774 899999987322 345566778999999954
No 324
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=41.76 E-value=1.8e+02 Score=28.65 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=54.3
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec----
Q 014237 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA---- 220 (428)
Q Consensus 146 SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVc---- 220 (428)
..||+ +++.+ ..++.++.|.+.||..|=+ ||. ....+..|+.++.+.-.+.+..+..| .-..+.++++.-
T Consensus 11 q~~~~-~f~~~-~~~~ia~~L~~~GVd~IEvG~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~ 85 (266)
T cd07944 11 YVNNW-DFGDE-FVKAIYRALAAAGIDYVEIGYRS--SPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDI 85 (266)
T ss_pred cccCc-cCCHH-HHHHHHHHHHHCCCCEEEeecCC--CCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCH
Confidence 46766 78886 5889999999999999877 443 12245667777777555555544443 124577776664
Q ss_pred --ccCCCCCCccee
Q 014237 221 --LDPYSSDGHDGI 232 (428)
Q Consensus 221 --Lc~YTshGHcGi 232 (428)
+.+...+|.+.|
T Consensus 86 ~~l~~a~~~gv~~i 99 (266)
T cd07944 86 DLLEPASGSVVDMI 99 (266)
T ss_pred HHHHHHhcCCcCEE
Confidence 456777787764
No 325
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=41.53 E-value=1.5e+02 Score=26.10 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=45.1
Q ss_pred ChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 014237 327 NYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
|..+++.... .+..|++++- |.+.-+++++.+++...+|+....-.........+.+.|..|
T Consensus 32 ~~~~~l~~~~---~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~ 96 (223)
T PRK11517 32 DGRDGLYLAL---KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGAND 96 (223)
T ss_pred CHHHHHHHHh---cCCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHhcCCCE
Confidence 5566665543 3568999985 666778899999987789998876555566667777888654
No 326
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=41.52 E-value=1.7e+02 Score=27.62 Aligned_cols=109 Identities=25% Similarity=0.223 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCCeecCCCCCCchHH-HHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCcccc-CCCCCC
Q 014237 250 KQAVSQARAGADVVSPSDMMDGRVG-AIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTY-QMNPAN 327 (428)
Q Consensus 250 k~Als~A~AGADiVAPSDMMDGRV~-aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktY-QmdpaN 327 (428)
.+|+..++-|.++..=|-+-+...+ .|++.|.+.|.. +...-+.....+.+|--.+ .- |+|+.. .....+
T Consensus 41 NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~-~~~~~~~~~~~t~~~~~~~-~~------~~~~~~~~~~~~~ 112 (284)
T cd01945 41 NAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVD-TSFIVVAPGARSPISSITD-IT------GDRATISITAIDT 112 (284)
T ss_pred HHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCCC-ccceeecCCCCCccEEEEc-cC------CCceEEEecCCCC
Confidence 3667778889888766666666665 489999999973 3322232222222221111 11 222111 111100
Q ss_pred hHHHHHHHHhchhcCCceEEecCCC--chHHHHHHHHhhCCCC
Q 014237 328 YREALVEAQADESEGADILLVKPGL--PYLDVIRLLRDKYPLP 368 (428)
Q Consensus 328 ~~EAlrE~~lDi~EGADilMVKPal--~YLDII~~vk~~~~lP 368 (428)
. --..+...+.-+.+|++.+-+.. .++++++..|++ +.|
T Consensus 113 ~-~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~-g~~ 153 (284)
T cd01945 113 Q-AAPDSLPDAILGGADAVLVDGRQPEAALHLAQEARAR-GIP 153 (284)
T ss_pred C-CCcccCCHHHhCcCCEEEEcCCCHHHHHHHHHHHHHc-CCC
Confidence 0 00011112235899999998865 367788887763 344
No 327
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=41.50 E-value=2.7e+02 Score=25.18 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=53.2
Q ss_pred CChHHHHHHHHhchhcCCceEEec---CCC---chHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCch------
Q 014237 326 ANYREALVEAQADESEGADILLVK---PGL---PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------ 392 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMVK---Pal---~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~------ 392 (428)
.|..+++.... +...|+|++- |+. .=+|.++++++.+ ..|+..+--..+...+..|.+.|..+.
T Consensus 36 ~~~~~~~~~~~---~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~ 112 (216)
T PRK10840 36 EDSTALINNLP---KLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGA 112 (216)
T ss_pred CCHHHHHHHHH---hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCC
Confidence 46677776543 2458999885 442 4588999998876 589999988888889999888886432
Q ss_pred hhHHHHHHHHHH
Q 014237 393 QRVMMESLMCLR 404 (428)
Q Consensus 393 ~~~vlEsL~~~k 404 (428)
...+.+++..+.
T Consensus 113 ~~~l~~ai~~v~ 124 (216)
T PRK10840 113 PTDLPKALAALQ 124 (216)
T ss_pred HHHHHHHHHHHH
Confidence 234455555443
No 328
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=41.32 E-value=89 Score=29.49 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCC------------CCCHHHHHHHHHHHCCC-eEEEeee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYND------------NGLVPRTIWLLKDRYPD-LVIYTDV 219 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~------------~g~v~rAIr~iK~~~Pd-l~VitDV 219 (428)
.+.+.++++.++|.+.|++.+. |+-...+........ |..+++.+..+++.+|+ -+++.|+
T Consensus 132 ~~~~~i~~l~~~g~~~i~v~~~-p~~~~~P~~~~~~~~~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~ 205 (270)
T cd01846 132 NLFQALQRLYAAGARNFLVLNL-PDLGLTPAFQAQGDAVAARATALTAAYNAKLAEKLAELKAQHPGVNILLFDT 205 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC-CCCCCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEh
Confidence 4788889999999999998884 654444433332222 33556667777788887 3445554
No 329
>PLN02540 methylenetetrahydrofolate reductase
Probab=41.30 E-value=4.3e+02 Score=29.65 Aligned_cols=122 Identities=13% Similarity=0.260 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcc----cCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPT----GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIV 233 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~----Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil 233 (428)
.|.+.+..+.++||+.|+...==|+ ++.. ....++ -...-|+.||+.+.|- -++++--|- .||.-..
T Consensus 74 ~L~~~L~~a~~~GIrNILALrGDpp--~~~d~~~~~~g~F~---~A~dLV~~Ir~~~gd~---f~IgVAGYP-EgHpe~~ 144 (565)
T PLN02540 74 KIDHALETIKSNGIQNILALRGDPP--HGQDKFVQVEGGFA---CALDLVKHIRSKYGDY---FGITVAGYP-EAHPDVI 144 (565)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCC--CCCCCcCCCCCCcc---cHHHHHHHHHHhCCCC---ceEEEeCCC-CCCCccc
Confidence 4778888899999999977643122 2211 011111 1445677888877651 123344553 5886543
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH-HHHHHHHHHCCCCCcee
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRV-GAIRAALDAEGFQHVSI 290 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV-~aIR~aLD~~Gf~~v~I 290 (428)
..++ ..|....+...+--..-.+||||.+---=.-|-.. ....+.+.+.|. +++|
T Consensus 145 ~~~~-~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi-~vPI 200 (565)
T PLN02540 145 GGDG-LATPEAYQKDLAYLKEKVDAGADLIITQLFYDTDIFLKFVNDCRQIGI-TCPI 200 (565)
T ss_pred cccc-ccCCCChHHHHHHHHHHHHcCCCEEeeccccCHHHHHHHHHHHHhcCC-CCCE
Confidence 2211 11222222222222245678999998887888655 566667777785 4443
No 330
>PRK06256 biotin synthase; Validated
Probab=41.28 E-value=1.6e+02 Score=29.39 Aligned_cols=67 Identities=25% Similarity=0.388 Sum_probs=43.1
Q ss_pred ChHHHHHHHHhchhcCCc-eEEe----cCCC----chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHH
Q 014237 327 NYREALVEAQADESEGAD-ILLV----KPGL----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMM 397 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGAD-ilMV----KPal----~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vl 397 (428)
+.+|.+.++..=.+.|+. +++| .|.. -++++++.+|+.+++.+.+ | .|.+++
T Consensus 92 s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~---~-----------~g~l~~----- 152 (336)
T PRK06256 92 DIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICA---C-----------LGLLTE----- 152 (336)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEe---c-----------CCcCCH-----
Confidence 456666666655667875 5554 2443 4689999999886665433 2 455554
Q ss_pred HHHHHHHHhcccEee
Q 014237 398 ESLMCLRRAGADIIL 412 (428)
Q Consensus 398 EsL~~~kRAGAd~Ii 412 (428)
|.+..+|+||++.|.
T Consensus 153 e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 153 EQAERLKEAGVDRYN 167 (336)
T ss_pred HHHHHHHHhCCCEEe
Confidence 455678888888764
No 331
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=41.16 E-value=1.5e+02 Score=28.41 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=51.7
Q ss_pred CCccccC------CCCCChHHHHHHHHhchhcCCceEEe------cCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHH
Q 014237 316 GDKKTYQ------MNPANYREALVEAQADESEGADILLV------KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKA 383 (428)
Q Consensus 316 gDRktYQ------mdpaN~~EAlrE~~lDi~EGADilMV------KPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIka 383 (428)
|||.+|+ ....|.-|..+.-. +.|||.|-| +-....+++|+++.+.+.+|+ ||-|
T Consensus 19 G~~~~~~p~~~~~~~~~dp~~~a~~~~---~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v---~vgG------- 85 (233)
T cd04723 19 GDRDNYRPITSNLCSTSDPLDVARAYK---ELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGL---WVDG------- 85 (233)
T ss_pred cChhhccccccCcccCCCHHHHHHHHH---HCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCE---EEec-------
Confidence 6777776 43445555444443 448866543 345578999999999988996 4554
Q ss_pred HHHCCCCchhhHHHHHHHHHHHhccc-EeehhcHH
Q 014237 384 GGALKMIDEQRVMMESLMCLRRAGAD-IILTYFAL 417 (428)
Q Consensus 384 Aa~~G~iD~~~~vlEsL~~~kRAGAd-~IiTYfA~ 417 (428)
|+=+ +|....+..+||+ +||..-+.
T Consensus 86 ----Gir~-----~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 86 ----GIRS-----LENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred ----CcCC-----HHHHHHHHHcCCCeEEEcceec
Confidence 3322 6667777788988 44555443
No 332
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=41.03 E-value=46 Score=34.60 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCCHH---HHHHHHHHHCCCeEEEeeec---ccCCCCCCccee
Q 014237 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLVP---RTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGI 232 (428)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~KD~~Gs~A~~~~g~v~---rAIr~iK~~~Pdl~VitDVc---Lc~YTshGHcGi 232 (428)
.+.++.+++.|+..|.+|--+.+. .|-..+ ...+-.+. ++|+..|+.. +.|..-++ =|||.
T Consensus 124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~---~t~~e~l~~~~~~v~~Ak~~G--l~v~~~is~~fg~p~~------- 191 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASASESFSKSNIN---CSIEESLVRYREVALAAKKHS--IPVRGYVSCVVGCPIE------- 191 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcC--CeEEEEEEeeecCCcc-------
Confidence 567888999999999998644431 111111 12223333 5666666653 44432232 36662
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH--CCC--CCceeechhhhhc
Q 014237 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA--EGF--QHVSIMSYTAKYA 298 (428)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~--~Gf--~~v~IMSYsaKyA 298 (428)
|.+ +.+.|.+.+-...++|||.|.-.|+.= -.|.+||+.++. -+| +|..=|+.+.=++
T Consensus 192 ----~r~----~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lA 261 (347)
T PLN02746 192 ----GPV----PPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILV 261 (347)
T ss_pred ----CCC----CHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHH
Confidence 333 356666777777889999999999864 245566666542 122 4555455544433
No 333
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=40.80 E-value=23 Score=36.28 Aligned_cols=72 Identities=25% Similarity=0.438 Sum_probs=45.2
Q ss_pred CcccCCCCCce-eechhhhHHHHHHH-HHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEee
Q 014237 141 DTPIGAMPGCY-RLGWRHGLVQEVAK-ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218 (428)
Q Consensus 141 ~~~I~SMPGv~-r~s~~~~l~~~v~~-~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitD 218 (428)
....-.|||=- ++-=|.+-++.+-. -.++||+++=.+ +++ | ..-.+-.++|++.-||++|||
T Consensus 98 ~~~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~--~~E--~-----------eqp~~i~~Ll~~~~PDIlViT- 161 (287)
T PF05582_consen 98 KEEYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIH--VPE--K-----------EQPEKIYRLLEEYRPDILVIT- 161 (287)
T ss_pred cccccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEE--ech--H-----------HhhHHHHHHHHHcCCCEEEEe-
Confidence 44566799954 33333333333333 457899987664 343 1 122356677777789999997
Q ss_pred ecccCCCCCCcceeecCCC
Q 014237 219 VALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 219 VcLc~YTshGHcGil~~~g 237 (428)
||||++.+.+
T Consensus 162 ---------GHD~~~K~~~ 171 (287)
T PF05582_consen 162 ---------GHDGYLKNKK 171 (287)
T ss_pred ---------CchhhhcCCC
Confidence 9999996444
No 334
>PLN02808 alpha-galactosidase
Probab=40.78 E-value=2.9e+02 Score=29.43 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=64.3
Q ss_pred HHHcCCCeEEEeecCCC----CCCCcccCcCcCC----CCCHHHHHHHHHHHCCCeEEEeeec--ccCCCCCCcceeecC
Q 014237 166 ARDVGVNSVVLFPKVPD----ALKSPTGDEAYND----NGLVPRTIWLLKDRYPDLVIYTDVA--LDPYSSDGHDGIVRE 235 (428)
Q Consensus 166 ~~~~GI~sv~LFgvi~~----~~KD~~Gs~A~~~----~g~v~rAIr~iK~~~Pdl~VitDVc--Lc~YTshGHcGil~~ 235 (428)
+.++|.+-|.| ++ ...|+.|.--.|+ +| +..-...|+++-=...|.+|.- -|. .+|-|-
T Consensus 63 l~~~Gy~yv~i----Dd~W~~~~rd~~G~~~~d~~rFP~G-~~~lad~iH~~GlkfGiy~~~G~~tC~---~~~pGs--- 131 (386)
T PLN02808 63 LAALGYKYINL----DDCWAELKRDSQGNLVPKASTFPSG-IKALADYVHSKGLKLGIYSDAGTLTCS---KTMPGS--- 131 (386)
T ss_pred hHHhCCEEEEE----cCCcCCCCcCCCCCEeeChhhcCcc-HHHHHHHHHHCCCceEEEecCCccccC---CCCCcc---
Confidence 46677777766 32 1356667655554 44 3445566666665678877752 221 123333
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCee------cCCCCCCchHHHHHHHHHHCC
Q 014237 236 DGVIMNDETVHQLCKQAVSQARAGADVV------SPSDMMDGRVGAIRAALDAEG 284 (428)
Q Consensus 236 ~g~IdND~Tl~~Lak~Als~A~AGADiV------APSDMMDGRV~aIR~aLD~~G 284 (428)
+.....-|-.+|+=|.|.| .|+..+..|+.++++||+..|
T Consensus 132 ---------~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tG 177 (386)
T PLN02808 132 ---------LGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSG 177 (386)
T ss_pred ---------hHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhC
Confidence 3444555777999999987 366678899999999999987
No 335
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.72 E-value=63 Score=31.76 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc-----------C-----cCCCCCHHHHHHHHHHHCCCe-EEEeee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE-----------A-----YNDNGLVPRTIWLLKDRYPDL-VIYTDV 219 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~-----------A-----~~~~g~v~rAIr~iK~~~Pdl-~VitDV 219 (428)
.+.+.|++|.++|.+.|++++. |+--.-+.... . -.-|..+++.++.+++.+|++ +++.|+
T Consensus 165 ~i~~~v~~L~~~GAr~~~v~~l-pplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~ 242 (315)
T cd01837 165 NISSAIKRLYDLGARKFVVPGL-GPLGCLPSQRTLFGGDGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVYADI 242 (315)
T ss_pred HHHHHHHHHHhCCCcEEEecCC-CCcCccHHHHhhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeh
Confidence 4778899999999999999995 65322221110 0 112345667788888888885 444553
No 336
>PRK12999 pyruvate carboxylase; Reviewed
Probab=40.66 E-value=7.4e+02 Score=30.01 Aligned_cols=207 Identities=18% Similarity=0.235 Sum_probs=108.7
Q ss_pred HHHhhhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHc--CCCeEEEeecCCCCCCCcccCc
Q 014237 114 AMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDV--GVNSVVLFPKVPDALKSPTGDE 191 (428)
Q Consensus 114 ~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~--GI~sv~LFgvi~~~~KD~~Gs~ 191 (428)
.+-+|+++.. +|.|+|..=+.-=.| ++=.|++.+ +.+..++.+-+. |+.++=..|- ..-|. ..
T Consensus 522 ~~~~~~~~~~--------~v~i~DtTlRDg~Qs-~~atr~~~~-d~l~ia~~l~~~~~g~~siE~~gg---atfd~--~~ 586 (1146)
T PRK12999 522 GFADWLRDQK--------RVLLTDTTFRDAHQS-LLATRVRTK-DLLRIAPATARLLPNLFSLEMWGG---ATFDV--AY 586 (1146)
T ss_pred HHHHHHhccC--------CcEEEECCcchhhhc-cccccCCHH-HHHHHHHHHHHHhCCCCEEEeeCC---cchhh--hc
Confidence 4455666642 477777652221122 223478886 599999999999 9999888652 12221 12
Q ss_pred CcCCCCCHHHHHHHHHHHCCCeEEEe--e-ecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014237 192 AYNDNGLVPRTIWLLKDRYPDLVIYT--D-VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (428)
Q Consensus 192 A~~~~g~v~rAIr~iK~~~Pdl~Vit--D-VcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDM 268 (428)
.+..+.+- ..+|.|++..|+..+.. - ..++.|+.. - |.-++..++.| +++|.|++--.|-
T Consensus 587 r~l~e~p~-erl~~~r~~~~~~~~q~l~Rg~n~vgy~~y-----------p--~~v~~~~i~~a---~~~Gid~~rifd~ 649 (1146)
T PRK12999 587 RFLKEDPW-ERLAELREAAPNVLFQMLLRGSNAVGYTNY-----------P--DNVVRAFVREA---AAAGIDVFRIFDS 649 (1146)
T ss_pred cccCCCHH-HHHHHHHHhCCCCeEEEEecccccccccCC-----------C--chHHHHHHHHH---HHcCCCEEEEecc
Confidence 22223332 57899999999844331 1 224455332 1 11222233433 4669998754432
Q ss_pred C---CchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCce
Q 014237 269 M---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345 (428)
Q Consensus 269 M---DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADi 345 (428)
+ +..-.+|+.+.+. |...-.-++|.. ..--|+| ..| ++.-.-+-.+++ ++-|||+
T Consensus 650 lnd~~~~~~~i~~vk~~-g~~~~~~i~ytg----~~~d~~~------------~~~--~~~~~~~~a~~l---~~~Ga~~ 707 (1146)
T PRK12999 650 LNWVENMRVAIDAVRET-GKIAEAAICYTG----DILDPAR------------AKY--DLDYYVDLAKEL---EKAGAHI 707 (1146)
T ss_pred CChHHHHHHHHHHHHHc-CCeEEEEEEEEe----cCCCCCC------------CCC--CHHHHHHHHHHH---HHcCCCE
Confidence 2 3444444444433 543333344431 0111111 111 111112222222 3469999
Q ss_pred EEecCCCc------hHHHHHHHHhhCCCCeEEEEec
Q 014237 346 LLVKPGLP------YLDVIRLLRDKYPLPIAAYQVS 375 (428)
Q Consensus 346 lMVKPal~------YLDII~~vk~~~~lPvaaYqVS 375 (428)
|-+|=-.- .-++|+.+|+++++|+. +|--
T Consensus 708 i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~-~H~H 742 (1146)
T PRK12999 708 LAIKDMAGLLKPAAAYELVSALKEEVDLPIH-LHTH 742 (1146)
T ss_pred EEECCccCCCCHHHHHHHHHHHHHHcCCeEE-EEeC
Confidence 98874332 24899999999999974 5543
No 337
>PRK06852 aldolase; Validated
Probab=40.48 E-value=4.4e+02 Score=27.28 Aligned_cols=212 Identities=14% Similarity=0.108 Sum_probs=114.7
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------HHHHHHHHHHHCCCeEEEeeecc----cCCCCCC
Q 014237 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------VPRTIWLLKDRYPDLVIYTDVAL----DPYSSDG 228 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~------v~rAIr~iK~~~Pdl~VitDVcL----c~YTshG 228 (428)
.+..+.++.. |=...++|+. + +.=+.|-..+...|+ ....++.+.+.-+|-++++==-+ ..|.+-+
T Consensus 19 ~~~~~~~~~~-~sGr~~ivp~-D--HG~~~Gp~~~~~~~~~~gl~dp~~~i~~~~~~g~dav~~~~G~l~~~~~~~~~~~ 94 (304)
T PRK06852 19 YIENYLEITK-GTGRLMLFAG-D--QKIEHLNDDFYGEGIAKDDADPEHLFRIASKAKIGVFATQLGLIARYGMDYPDVP 94 (304)
T ss_pred HHHHHHHhhC-CCCCEEEEec-c--CCcccCCcccccccCCcccCCHHHHHHHHHhcCCCEEEeCHHHHHhhccccCCCc
Confidence 3444444433 3345556675 3 555556544444444 55677777776678777652212 2333222
Q ss_pred cceeecCCC--cccc----HH--HHHHHHHHHHHHH---HcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCce
Q 014237 229 HDGIVREDG--VIMN----DE--TVHQLCKQAVSQA---RAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVS 289 (428)
Q Consensus 229 HcGil~~~g--~IdN----D~--Tl~~Lak~Als~A---~AGADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~ 289 (428)
=|++=++ .+-. |. ++-.-.+.|+.+- ..|||.|+=.=.+ =-.++.|.+.-++.|+- +.
T Consensus 95 --lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlP-ll 171 (304)
T PRK06852 95 --YLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLI-AV 171 (304)
T ss_pred --EEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc-EE
Confidence 1332122 1111 22 4444567888764 3568888763222 23577777888888875 66
Q ss_pred eechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCC----chHHHHHHHHhhC
Q 014237 290 IMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGL----PYLDVIRLLRDKY 365 (428)
Q Consensus 290 IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal----~YLDII~~vk~~~ 365 (428)
+|.|.- |+. ..|.. ||....-|.| .=.+=|||||=||+-. -=.|-.+++-+..
T Consensus 172 ~~~ypr-------G~~---------i~~~~----~~~~ia~aaR---iaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~ 228 (304)
T PRK06852 172 LWIYPR-------GKA---------VKDEK----DPHLIAGAAG---VAACLGADFVKVNYPKKEGANPAELFKEAVLAA 228 (304)
T ss_pred EEeecc-------Ccc---------cCCCc----cHHHHHHHHH---HHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC
Confidence 677843 221 11111 4544554444 3457899999999742 1236666777767
Q ss_pred -CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 366 -PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 366 -~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
++||.. +| ..+. +.++++-+.-.+++++||..|++
T Consensus 229 g~vpVvi---aG--------G~k~--~~~e~L~~v~~ai~~aGa~Gv~~ 264 (304)
T PRK06852 229 GRTKVVC---AG--------GSST--DPEEFLKQLYEQIHISGASGNAT 264 (304)
T ss_pred CCCcEEE---eC--------CCCC--CHHHHHHHHHHHHHHcCCceeee
Confidence 889764 33 2222 44444333444555688877653
No 338
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=40.43 E-value=4.4e+02 Score=27.31 Aligned_cols=60 Identities=18% Similarity=0.126 Sum_probs=34.8
Q ss_pred HH-HHHHHHhchhcCCceEEec-CC-----CchHHHHHHHHhhCCCCeEEEEechHH--HHHHHHHHCCCCc
Q 014237 329 RE-ALVEAQADESEGADILLVK-PG-----LPYLDVIRLLRDKYPLPIAAYQVSGEY--SMIKAGGALKMID 391 (428)
Q Consensus 329 ~E-AlrE~~lDi~EGADilMVK-Pa-----l~YLDII~~vk~~~~lPvaaYqVSGEY--aMIkaAa~~G~iD 391 (428)
+| ++.-+.+=.+.|.|+|=|. |. ..+++..+++|+.+++||.+- |-+ .+...+.+.|+.|
T Consensus 248 ~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~---G~~~~~~ae~~i~~G~~D 316 (362)
T PRK10605 248 EADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGA---GAYTAEKAETLIGKGLID 316 (362)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEe---CCCCHHHHHHHHHcCCCC
Confidence 45 4443333334689999765 21 224567788999999998753 323 3344445555544
No 339
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=40.41 E-value=22 Score=36.93 Aligned_cols=62 Identities=27% Similarity=0.170 Sum_probs=40.8
Q ss_pred chhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 338 DESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 338 Di~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
|+-|-.-.+||+=|..=--+-++.-++.+-|+-.- +=.++..++|.+....|.|||||+|.|
T Consensus 11 ~~~~~~~~vlvlDGG~~t~Ler~g~~~~~~PlWs~--------------~~~~s~Pe~V~~~H~efL~aGadIi~T 72 (317)
T KOG1579|consen 11 DILENTGRVLVLDGGFGTQLERRGYDKVDSPLWSA--------------EALASNPEAVEQVHKEFLRAGADIIST 72 (317)
T ss_pred HHHhccCcEEEEeChHHHHHHhhcccccCCCCCCc--------------hhhccChHHHHHHHHHHHHccCcEEEE
Confidence 33334447888888766655555545444454321 112344789999999999999999975
No 340
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=40.41 E-value=1.1e+02 Score=36.73 Aligned_cols=161 Identities=22% Similarity=0.263 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
-+++.++++.+.|+..+.| ||-.|.- .|. -+..-++.||+++ ++ |.--|.||- .|
T Consensus 690 y~~~~ak~l~~~Gad~I~i--------kDt~Gll--~P~-~~~~Lv~~lk~~~-~~---------pi~~H~Hdt----~G 744 (1143)
T TIGR01235 690 YYTNLAVELEKAGAHILGI--------KDMAGLL--KPA-AAKLLIKALREKT-DL---------PIHFHTHDT----SG 744 (1143)
T ss_pred HHHHHHHHHHHcCCCEEEE--------CCCcCCc--CHH-HHHHHHHHHHHhc-CC---------eEEEEECCC----CC
Confidence 3666677777777765433 3344431 111 1345566666665 32 334577742 12
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCCch----HHHHHHHHHHCCCC-Cc---eeechhhhhcc---ccccc
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVV--SPSDMMDGR----VGAIRAALDAEGFQ-HV---SIMSYTAKYAS---SFYGP 304 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiV--APSDMMDGR----V~aIR~aLD~~Gf~-~v---~IMSYsaKyAS---afYGP 304 (428)
- =....+.-++||||+| |=+.|--|. +..+=.+|...|+. ++ .|... +.|.. .+|.|
T Consensus 745 l---------a~an~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~tgidl~~l~~i-s~~~~~vr~~y~~ 814 (1143)
T TIGR01235 745 I---------AVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERDPGLNVAWIREL-SAYWEAVRNLYAA 814 (1143)
T ss_pred c---------HHHHHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCCCCcCHHHHHHH-HHHHHHHHHHhhc
Confidence 0 0112455679999998 344453332 46666778777763 22 33333 33544 58999
Q ss_pred hhhhhcCCCCCCCccccCCCCC---ChHHHHH-------------HHHhchhcCCceEEecCCCchH
Q 014237 305 FREALDSNPRFGDKKTYQMNPA---NYREALV-------------EAQADESEGADILLVKPGLPYL 355 (428)
Q Consensus 305 FRdAa~Sap~fgDRktYQmdpa---N~~EAlr-------------E~~lDi~EGADilMVKPal~YL 355 (428)
|-.-. .+|. .+--.|||+=+ |-..-++ |...=-++.-|+++|=|..-+.
T Consensus 815 ~~~~~-~~~~-~~v~~~~~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~lG~~~~VTP~Sq~v 879 (1143)
T TIGR01235 815 FESDL-KGPA-SEVYLHEMPGGQYTNLQFQARSLGLGDRWHEVKQAYREANQMFGDIVKVTPSSKVV 879 (1143)
T ss_pred CCCCC-cCCC-cCeEEecCCCcccchHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCceECChhHhH
Confidence 95333 2222 24556777754 3332222 2222122345888888876543
No 341
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=40.39 E-value=26 Score=33.19 Aligned_cols=72 Identities=26% Similarity=0.365 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHhchhcCCceEEecCCCch---------HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchh
Q 014237 323 MNPANYREALVEAQADESEGADILLVKPGLPY---------LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQ 393 (428)
Q Consensus 323 mdpaN~~EAlrE~~lDi~EGADilMVKPal~Y---------LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~ 393 (428)
+|+.+.+||+ +....+....|++ |+++++ ..+++.+|+.+ .||+ +.....|--
T Consensus 7 LD~~~~~~a~-~i~~~~~~~v~~i--KvG~~l~~~~G~~~l~~~i~~l~~~~-~~I~--------------~D~K~~Dig 68 (226)
T PF00215_consen 7 LDPTDLEEAL-RIADELGDYVDII--KVGTPLFLAYGLEALPEIIEELKERG-KPIF--------------LDLKLGDIG 68 (226)
T ss_dssp E-SSSHHHHH-HHHHHHGGGSSEE--EEEHHHHHHHCHHHHHHHHHHHHHTT-SEEE--------------EEEEE-SSH
T ss_pred eCCCCHHHHH-HHHHHhcCcceEE--EEChHHHhcCChhhHHHHHHHHHHhc-CCEe--------------eeeeecccc
Q ss_pred hHHHHHHH---HHHHhcccEee
Q 014237 394 RVMMESLM---CLRRAGADIIL 412 (428)
Q Consensus 394 ~~vlEsL~---~~kRAGAd~Ii 412 (428)
..+-.... .+..+|||++.
T Consensus 69 ~t~~~~~~~~~~~~~~gaD~vT 90 (226)
T PF00215_consen 69 NTVARYAEAGFAAFELGADAVT 90 (226)
T ss_dssp HHHHHHHHSCHHHHTTTESEEE
T ss_pred hHHHHHHHHhhhhhcCCCcEEE
No 342
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=40.39 E-value=80 Score=31.54 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=25.4
Q ss_pred hcCCceEEecC--------CCchHHHHHHHHhhCCCCeEE
Q 014237 340 SEGADILLVKP--------GLPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 340 ~EGADilMVKP--------al~YLDII~~vk~~~~lPvaa 371 (428)
+-|+|.|-|-+ +.+.+|.++++|+..++||.+
T Consensus 158 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 197 (319)
T TIGR00737 158 DAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIG 197 (319)
T ss_pred HhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEE
Confidence 45899997732 235799999999999999875
No 343
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=39.99 E-value=2.5e+02 Score=26.34 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=55.6
Q ss_pred ccCCCCCChHHHHHHHHhchh-cCCceEEecCCCchHHHHHHHHhhCCCCeE--EE----E----echHHHHHHHHHHCC
Q 014237 320 TYQMNPANYREALVEAQADES-EGADILLVKPGLPYLDVIRLLRDKYPLPIA--AY----Q----VSGEYSMIKAGGALK 388 (428)
Q Consensus 320 tYQmdpaN~~EAlrE~~lDi~-EGADilMVKPal~YLDII~~vk~~~~lPva--aY----q----VSGEYaMIkaAa~~G 388 (428)
+|-=+|-+..|-..+...-.. .||..+-+- . ++.|+.+|+.+++|+. .| + +-|.+.-++.+.+.|
T Consensus 13 ~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~---~-~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aG 88 (221)
T PRK01130 13 ALPGEPLHSPEIMAAMALAAVQGGAVGIRAN---G-VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAG 88 (221)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC---C-HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcC
Confidence 344567777777777776655 568766652 1 7999999999999985 23 2 223334566666666
Q ss_pred C----Cchh-------hHHHHHHHHHHH-hcccEeehhcHHH
Q 014237 389 M----IDEQ-------RVMMESLMCLRR-AGADIILTYFALQ 418 (428)
Q Consensus 389 ~----iD~~-------~~vlEsL~~~kR-AGAd~IiTYfA~e 418 (428)
. +|.. ..+.|.+..+++ .|..++......+
T Consensus 89 ad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~e 130 (221)
T PRK01130 89 ADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLE 130 (221)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHH
Confidence 3 1110 233455555555 5555555544433
No 344
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=39.98 E-value=31 Score=30.33 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=28.4
Q ss_pred HhchhcCCc-------eEEecCCCchH--HHH-HHHHhhCCCCeE
Q 014237 336 QADESEGAD-------ILLVKPGLPYL--DVI-RLLRDKYPLPIA 370 (428)
Q Consensus 336 ~lDi~EGAD-------ilMVKPal~YL--DII-~~vk~~~~lPva 370 (428)
++-..|||| |+|-||.-||+ |=| +.+-+.+.+||.
T Consensus 50 ~lk~~egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv 94 (101)
T COG5561 50 QLKGKEGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVV 94 (101)
T ss_pred HHhhccccceeeeeeeeeccCCCCCccCHHHHHHHHHHHhCCcEE
Confidence 344668888 67889999999 877 888889999985
No 345
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=39.97 E-value=63 Score=27.79 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=31.1
Q ss_pred hhcCCceEEecCCCch-----HHHHHHHHhhC-CCCeEEEEec
Q 014237 339 ESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAAYQVS 375 (428)
Q Consensus 339 i~EGADilMVKPal~Y-----LDII~~vk~~~-~lPvaaYqVS 375 (428)
.+-|+|+|.|-...+| .++++.+|+.+ ++|+...-..
T Consensus 81 ~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 81 RAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred HHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 5669999999999885 77999999998 7998887653
No 346
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=39.95 E-value=1.4e+02 Score=27.75 Aligned_cols=110 Identities=13% Similarity=0.154 Sum_probs=64.7
Q ss_pred CCCchHHHHHHHHHHCCC-CCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceE
Q 014237 268 MMDGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADIL 346 (428)
Q Consensus 268 MMDGRV~aIR~aLD~~Gf-~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADil 346 (428)
...+-+..+.+.|.+.|+ .+|.|.|+...... -+|+. .|.+ +..|-++.. ... + .+.|+|.+
T Consensus 109 ~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~----~~~~~---~p~~--~~~~~~~~~-~~~-~------~~~~~~~~ 171 (220)
T cd08579 109 DSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIE----KVKKL---DPKI--KTGYILPFN-IGN-L------PKTNVDFY 171 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHH----HHHHH---CCCC--eEEEEEecc-cCc-c------cccCceEE
Confidence 455667788888998988 56777665433221 12222 3432 122222111 000 1 23688888
Q ss_pred EecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 014237 347 LVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 347 MVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYf 415 (428)
-+.-....-+.|+.+++ .+++|.+|-|- .. +.+..+...|+|.|+|-+
T Consensus 172 ~~~~~~~~~~~v~~~~~-~G~~v~~wtvn----------------~~----~~~~~~~~~Gvd~i~TD~ 219 (220)
T cd08579 172 SIEYSTLNKEFIRQAHQ-NGKKVYVWTVN----------------DP----DDMQRYLAMGVDGIITDY 219 (220)
T ss_pred eeehhhcCHHHHHHHHH-CCCEEEEEcCC----------------CH----HHHHHHHHcCCCEEeCCC
Confidence 76554444578888887 58999999763 22 234566677999999964
No 347
>PLN02743 nicotinamidase
Probab=39.86 E-value=89 Score=30.69 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=55.1
Q ss_pred HHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH---HHHHHHHHH-C--C--CeEEEeeecccCCCCCCcceeecCC
Q 014237 165 KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP---RTIWLLKDR-Y--P--DLVIYTDVALDPYSSDGHDGIVRED 236 (428)
Q Consensus 165 ~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~---rAIr~iK~~-~--P--dl~VitDVcLc~YTshGHcGil~~~ 236 (428)
.|.++||+.+++.|+..+ .-|. -++|...+. | | +++|++|.|- .|+...|.+-.-++
T Consensus 145 ~Lr~~gI~~liv~Gv~T~--------------~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~a-t~d~~~h~~~~~~~ 209 (239)
T PLN02743 145 WVNNNKIKVILVVGICTD--------------ICVLDFVASALSARNHGILPPLEDVVVYSRGCA-TYDLPLHVAKTIKG 209 (239)
T ss_pred HHHHCCCCEEEEEEeCcc--------------hhccChHHHHHHHHHcCCCCCCceEEEeCCccc-cCChhhhhhhhhcc
Confidence 467899999999997332 3332 344444444 5 2 7999999997 46788888755456
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeec
Q 014237 237 GVIMNDETVHQLCKQAVSQARAGADVVS 264 (428)
Q Consensus 237 g~IdND~Tl~~Lak~Als~A~AGADiVA 264 (428)
|..-..+++..++--.+ +..||.||.
T Consensus 210 ~~~~~~~~~~~~~~~~~--~~~~~~v~~ 235 (239)
T PLN02743 210 ALAHPQELMHHMGLYMA--KGRGAKVVS 235 (239)
T ss_pred ccCCCHHHHHHHHHHHH--HhCCcEeee
Confidence 77777777776654322 345777763
No 348
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=39.79 E-value=99 Score=30.38 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 014237 355 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 355 LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTY 414 (428)
++.++++++..++||.+ +|-|..-+-+.|.| ++|||+|--+
T Consensus 223 l~~v~~i~~~~~ipvi~---------------~GGI~s~~da~~~l----~~GAd~V~ig 263 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIG---------------VGGITSFEDALEFL----MAGASAVQVG 263 (300)
T ss_pred HHHHHHHHhcCCCCEEE---------------ECCCCCHHHHHHHH----HcCCCceeec
Confidence 68889999988899875 34443333444443 5789886543
No 349
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=39.79 E-value=93 Score=33.68 Aligned_cols=144 Identities=13% Similarity=0.086 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCC-CCCcccc
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTY 321 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~-fgDRktY 321 (428)
-|-+.+++++-.++..| |+|= |.+++.|-+-+.|.-.+.-+ .+|++.+-+ -|-++-|
T Consensus 171 Lsp~~~a~~~ye~~~Gg-D~IK----------------DDE~l~~q~f~p~~eRv~~~-----~~ai~~a~~eTG~~~~y 228 (443)
T PRK13475 171 LRPEPFAEACYDFWLGG-DFIK----------------NDEPQGNQVFAPLKKTVPLV-----ADAMKRAQDETGEAKLF 228 (443)
T ss_pred CCHHHHHHHHHHHHhcC-Cccc----------------ccccccCCCCCCHHHHHHHH-----HHHHHHHHHhhCCceeE
Confidence 46778899999999987 9873 34454333322222111100 022222221 2778889
Q ss_pred CCCCC-C-hHHHHHHHHhchhc-CCc----eEEecCCCchHHHHHHHHhh-CCCCeEEEEechHHHHHHHHHHCCCCchh
Q 014237 322 QMNPA-N-YREALVEAQADESE-GAD----ILLVKPGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAGGALKMIDEQ 393 (428)
Q Consensus 322 Qmdpa-N-~~EAlrE~~lDi~E-GAD----ilMVKPal~YLDII~~vk~~-~~lPvaaYqVSGEYaMIkaAa~~G~iD~~ 393 (428)
-++-. . .+|.++.+..=.++ |++ .+||=+-..=++.++.+++. .++|+-+ |=.|-=++....-..|+ ..
T Consensus 229 ~~NiTa~~~~em~~ra~~a~e~~G~~~~~~~vmv~~~~~G~~al~~lr~~~~~l~iha-HrA~~ga~~r~~~~~Gi-s~- 305 (443)
T PRK13475 229 SANITADDHYEMIARGEYILETFGENADHVAFLVDGYVAGPGAVTTARRQYPDQYLHY-HRAGHGAVTSPSSKRGY-TA- 305 (443)
T ss_pred eccCCCCCHHHHHHHHHHHHHhcCCCccceEEEEcCccchHHHHHHHHhcCCCcEEEe-ccccchhhhcCCCCCCE-eH-
Confidence 88876 4 78999999888887 999 89999988889999999985 4799874 22111011000001233 22
Q ss_pred hHHHHHHHHHHHhcccEeehh
Q 014237 394 RVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 394 ~~vlEsL~~~kRAGAd~IiTY 414 (428)
.++ -+-+|=||||.|.+-
T Consensus 306 -~vl--~Kl~RLaGaD~ih~g 323 (443)
T PRK13475 306 -FVL--SKMARLQGASGIHTG 323 (443)
T ss_pred -HHH--HHHHHHcCCCccccC
Confidence 333 234566999999743
No 350
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=39.77 E-value=2.8e+02 Score=26.47 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=62.2
Q ss_pred ccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEec-----hH-HHHHHHHHHCCCCc
Q 014237 318 KKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVS-----GE-YSMIKAGGALKMID 391 (428)
Q Consensus 318 RktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVS-----GE-YaMIkaAa~~G~iD 391 (428)
....-+++.+..+ +.+...+..++.|+|.|.|+. .-+.+.+-+...+-+.+---. |- ...+++|+++|..=
T Consensus 58 l~GiEi~~~~~~~-~~~~~~~~~~~~d~v~v~~~~--~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~l 134 (237)
T PRK00912 58 FRGVEIVASNPSK-LRGLVGKFRKKVDVLAVHGGD--EKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAI 134 (237)
T ss_pred EeeEEEecCCHHH-HHHHHHhccCcccEEEEeCCC--HHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEE
Confidence 4445556655544 666666778899999999886 344455666555555444322 22 26678888877642
Q ss_pred h---hhH-----------H---HHHHHHHHHhcccEeehhcHH
Q 014237 392 E---QRV-----------M---MESLMCLRRAGADIILTYFAL 417 (428)
Q Consensus 392 ~---~~~-----------v---lEsL~~~kRAGAd~IiTYfA~ 417 (428)
| ... + .+.+...++.|+-+||+..|.
T Consensus 135 EIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh 177 (237)
T PRK00912 135 EFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAM 177 (237)
T ss_pred EEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Confidence 2 111 1 467788888999999988764
No 351
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=39.71 E-value=3e+02 Score=25.80 Aligned_cols=112 Identities=19% Similarity=0.289 Sum_probs=62.3
Q ss_pred CchHHHHHHHHHHCCC-CCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEe
Q 014237 270 DGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLV 348 (428)
Q Consensus 270 DGRV~aIR~aLD~~Gf-~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMV 348 (428)
.+-+..+-+.|.+.|. .++.+.||..+....+ | .-.|.+ +..|-... ...++.. ... .-+++.+-+
T Consensus 117 ~~~~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~----~---~~~p~~--~~~~l~~~-~~~~~~~-~~~--~~~~~~v~~ 183 (230)
T cd08563 117 PGIEKKVLELVKEYNLEDRVIFSSFNHESLKRL----K---KLDPKI--KLALLYET-GLQDPKD-YAK--KIGADSLHP 183 (230)
T ss_pred hhHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHH----H---HHCCCC--cEEEEecC-cccCHHH-HHH--HhCCEEEcc
Confidence 4556778888888876 5688888866543322 2 222432 12221111 1111111 111 134666655
Q ss_pred cCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 014237 349 KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 349 KPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYf 415 (428)
.-....-++|+.+++. ++++.+|-| +.. |.+.-+.+.|+|.|+|=+
T Consensus 184 ~~~~~~~~~i~~~~~~-g~~v~~Wtv----------------n~~----~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 184 DFKLLTEEVVEELKKR-GIPVRLWTV----------------NEE----EDMKRLKDLGVDGIITNY 229 (230)
T ss_pred CchhcCHHHHHHHHHC-CCEEEEEec----------------CCH----HHHHHHHHCCCCEEeCCC
Confidence 4333344677887775 899999977 221 444566677999999853
No 352
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=39.70 E-value=54 Score=35.39 Aligned_cols=54 Identities=30% Similarity=0.425 Sum_probs=40.9
Q ss_pred hhcCCceEEecCCCc----hHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 339 ESEGADILLVKPGLP----YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 339 i~EGADilMVKPal~----YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
+++|+|+|.+=.+-. .+|.|+.+|+.| ++||.+=+| .+ .|....+..||||+|-
T Consensus 234 v~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~---------------~t-----~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 234 LDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNV---------------VS-----AEGVRDLLEAGANIIK 292 (475)
T ss_pred HHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEecc---------------CC-----HHHHHHHHHhCCCEEE
Confidence 568999999987765 599999999998 699998222 12 3444556678999985
No 353
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=39.60 E-value=2.8e+02 Score=30.42 Aligned_cols=149 Identities=17% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCee--cCCCCCCchHHHHHHHHHHCCCCCceeechh-hhhc--------------------cc
Q 014237 244 TVHQLCKQAVSQARAGADVV--SPSDMMDGRVGAIRAALDAEGFQHVSIMSYT-AKYA--------------------SS 300 (428)
Q Consensus 244 Tl~~Lak~Als~A~AGADiV--APSDMMDGRV~aIR~aLD~~Gf~~v~IMSYs-aKyA--------------------Sa 300 (428)
|++.=.++|-.+.++|.|.| .=+-+-.+-..++|+..+ .++.++-|++.+ ++-. -.
T Consensus 21 s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~-~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v~ 99 (526)
T TIGR00977 21 SLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKE-MNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVVT 99 (526)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHH-hCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEEE
Q ss_pred cccch--------------------hhhhcCCCCCCCc---------cccCCCCCChHHHHHHHHhchhcCCceEEec--
Q 014237 301 FYGPF--------------------REALDSNPRFGDK---------KTYQMNPANYREALVEAQADESEGADILLVK-- 349 (428)
Q Consensus 301 fYGPF--------------------RdAa~Sap~fgDR---------ktYQmdpaN~~EAlrE~~lDi~EGADilMVK-- 349 (428)
+|.|- ++++.-+-..|.+ ..|--||.-..|.++++. +-|||.|.+.
T Consensus 100 i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~---~aGad~i~i~DT 176 (526)
T TIGR00977 100 IFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQ---QAGADWLVLCDT 176 (526)
T ss_pred EEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHH---hCCCCeEEEecC
Q ss_pred ----CCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 014237 350 ----PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 411 (428)
Q Consensus 350 ----Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~I 411 (428)
-=.-+-++|+.++++++.|...+|- -=|.--++--+|.++ +|||+.|
T Consensus 177 vG~~~P~~v~~li~~l~~~~~~~~i~vH~--------------HND~GlAvANslaAv-~AGA~~V 227 (526)
T TIGR00977 177 NGGTLPHEISEITTKVKRSLKQPQLGIHA--------------HNDSGTAVANSLLAV-EAGATMV 227 (526)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCCEEEEEE--------------CCCCChHHHHHHHHH-HhCCCEE
No 354
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=39.53 E-value=55 Score=33.48 Aligned_cols=54 Identities=31% Similarity=0.503 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--h--------HHHHHHHHHHCCC-CCceeechh
Q 014237 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDG--R--------VGAIRAALDAEGF-QHVSIMSYT 294 (428)
Q Consensus 241 ND~Tl~~Lak~Als~A~AGADiVAPSDMMDG--R--------V~aIR~aLD~~Gf-~~v~IMSYs 294 (428)
=.+.|++|+++|....+.|+.|+--||---+ | |+++.+.|-++|. .+++|+-=|
T Consensus 137 L~~aL~~l~~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIves 201 (287)
T PF04898_consen 137 LEEALDRLCEEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVES 201 (287)
T ss_dssp HHHHHHHHHHHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEec
Confidence 4688999999999999999999999987543 3 8999999999999 889987544
No 355
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=39.52 E-value=25 Score=35.95 Aligned_cols=67 Identities=22% Similarity=0.420 Sum_probs=42.3
Q ss_pred CCCCceee-chhhhHHHHHHH-HHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 014237 146 AMPGCYRL-GWRHGLVQEVAK-ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (428)
Q Consensus 146 SMPGv~r~-s~~~~l~~~v~~-~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~ 223 (428)
.|||=--| -=|.+-++.+-. -.++||+++=.+ +++. ..-.+-.++|++.-||++|||
T Consensus 102 ~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~--~~E~-------------eqp~~i~~Ll~~~~PDIlViT------ 160 (283)
T TIGR02855 102 GMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIH--CKEK-------------EMPEKVLDLIEEVRPDILVIT------ 160 (283)
T ss_pred CCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEE--ecch-------------hchHHHHHHHHHhCCCEEEEe------
Confidence 68885433 223333333333 357899987554 3421 223467778888889999997
Q ss_pred CCCCCcceeecCCC
Q 014237 224 YSSDGHDGIVREDG 237 (428)
Q Consensus 224 YTshGHcGil~~~g 237 (428)
||||++.+.|
T Consensus 161 ----GHD~~~K~~~ 170 (283)
T TIGR02855 161 ----GHDAYSKNKG 170 (283)
T ss_pred ----CchhhhcCCC
Confidence 9999996434
No 356
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=39.51 E-value=2.6e+02 Score=25.39 Aligned_cols=88 Identities=23% Similarity=0.214 Sum_probs=49.3
Q ss_pred CCCCChHHHHHHHHhchhcCCceEEec-------CCC-chHHHHHHHHhhCCCCeEE-EEechHHHHHHHHHHCCC----
Q 014237 323 MNPANYREALVEAQADESEGADILLVK-------PGL-PYLDVIRLLRDKYPLPIAA-YQVSGEYSMIKAGGALKM---- 389 (428)
Q Consensus 323 mdpaN~~EAlrE~~lDi~EGADilMVK-------Pal-~YLDII~~vk~~~~lPvaa-YqVSGEYaMIkaAa~~G~---- 389 (428)
+|+.+..|.++.+. +-|||.|=+= |.+ .-+++++.+++..+.|+-+ .-|-+.-..++.+.+.|.
T Consensus 8 ~~~~~~~~~~~~~~---~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 8 ADFARLGEEVKAVE---EAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CCHHHHHHHHHHHH---HcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEE
Confidence 45556666666654 4578875441 222 4588999998877777522 333222223555555552
Q ss_pred -Cch-hhHHHHHHHHHHHhcccEeeh
Q 014237 390 -IDE-QRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 390 -iD~-~~~vlEsL~~~kRAGAd~IiT 413 (428)
-++ .....+.+..++..|...+++
T Consensus 85 vh~~~~~~~~~~~~~~~~~g~~~~~~ 110 (210)
T TIGR01163 85 VHPEASEHIHRLLQLIKDLGAKAGIV 110 (210)
T ss_pred EccCCchhHHHHHHHHHHcCCcEEEE
Confidence 112 233455566667778777665
No 357
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.40 E-value=61 Score=33.06 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred ccccchhhhhcCCCC-CCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHh-hCCCCeEEEEechH
Q 014237 300 SFYGPFREALDSNPR-FGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD-KYPLPIAAYQVSGE 377 (428)
Q Consensus 300 afYGPFRdAa~Sap~-fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~-~~~lPvaaYqVSGE 377 (428)
.|||.+.+|+..+-+ ...++ -.+-..|.+||... ++.|||+||.= -|..=++-+.++. +..-|-..-.+||
T Consensus 181 ~~~G~i~~ai~~~r~~~~~~k-IeVEv~tl~ea~ea----l~~gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ieaSG- 253 (289)
T PRK07896 181 AAAGSVVAALRAVRAAAPDLP-CEVEVDSLEQLDEV----LAEGAELVLLD-NFPVWQTQEAVQRRDARAPTVLLESSG- 253 (289)
T ss_pred HHhCcHHHHHHHHHHhCCCCC-EEEEcCCHHHHHHH----HHcCCCEEEeC-CCCHHHHHHHHHHHhccCCCEEEEEEC-
Q ss_pred HHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 378 YSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 378 YaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
.+-+|.+..+-..|+|+|-|
T Consensus 254 ----------------GI~~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 254 ----------------GLTLDTAAAYAETGVDYLAV 273 (289)
T ss_pred ----------------CCCHHHHHHHHhcCCCEEEe
No 358
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=39.39 E-value=1.5e+02 Score=27.73 Aligned_cols=53 Identities=26% Similarity=0.278 Sum_probs=34.7
Q ss_pred CCccccCCCCCChHHHHHHHHhchhcCCceEEec-------CCCchHHHHHHHHhhCCCCeEE
Q 014237 316 GDKKTYQMNPANYREALVEAQADESEGADILLVK-------PGLPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 316 gDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK-------Pal~YLDII~~vk~~~~lPvaa 371 (428)
|+|.+|+-...+..|..++- .+.|||-|-|= -...-+++|+++++.+++|+..
T Consensus 18 G~~~~~~~~~~dp~~~a~~~---~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ 77 (230)
T TIGR00007 18 GDYDKETVYGDDPVEAAKKW---EEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQV 77 (230)
T ss_pred cccCcceEecCCHHHHHHHH---HHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEE
Confidence 66777754444556655554 46788877662 1112479999999999999643
No 359
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=39.01 E-value=2.7e+02 Score=27.00 Aligned_cols=97 Identities=24% Similarity=0.307 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
.-+.|+++++++|...|-+--.+. ..|+. . ...+.+-|+.|++...++.+.. |+ |.|
T Consensus 71 ~K~~E~~~Av~~GAdEiDvv~n~g-~l~~g--~-----~~~v~~ei~~i~~~~~g~~lKv--------------Il-E~~ 127 (211)
T TIGR00126 71 VKLYETKEAIKYGADEVDMVINIG-ALKDG--N-----EEVVYDDIRAVVEACAGVLLKV--------------II-ETG 127 (211)
T ss_pred HHHHHHHHHHHcCCCEEEeecchH-hhhCC--c-----HHHHHHHHHHHHHHcCCCeEEE--------------EE-ecC
Confidence 357889999999999988733222 22321 1 1345566777777654322221 33 456
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC------chHHHHHHHHH
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD------GRVGAIRAALD 281 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD------GRV~aIR~aLD 281 (428)
... |+ .+.+.+-.-.++|||+|=-|-=-- +.|..+|+.+.
T Consensus 128 ~L~-~~---ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 128 LLT-DE---EIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred CCC-HH---HHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc
Confidence 633 43 344555556789999997763222 55666666653
No 360
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=38.92 E-value=1.1e+02 Score=27.10 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=63.8
Q ss_pred HHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH-CCCeEEEeeecccCCCCCC---------cce
Q 014237 162 EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR-YPDLVIYTDVALDPYSSDG---------HDG 231 (428)
Q Consensus 162 ~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~-~Pdl~VitDVcLc~YTshG---------HcG 231 (428)
.++.+.+.|++-|.+-.. ++ ..+....-..|.......+.+.+++. +-.+.+|.+.--..++... .+|
T Consensus 71 ~~~~l~~~~ip~v~~~~~-~~-~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 148 (264)
T cd01537 71 IVKLARKAGIPVVLVDRD-IP-DGDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAG 148 (264)
T ss_pred HHHHhhhcCCCEEEeccC-CC-CCcccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcC
Confidence 466667777776655332 21 11222333344445555666666654 3456666542211121100 011
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcC--CC-eecCCCCCCchHHHHHHHHHHCCC---CCceeechhhhhccc
Q 014237 232 IVREDGVIMNDETVHQLCKQAVSQARAG--AD-VVSPSDMMDGRVGAIRAALDAEGF---QHVSIMSYTAKYASS 300 (428)
Q Consensus 232 il~~~g~IdND~Tl~~Lak~Als~A~AG--AD-iVAPSDMMDGRV~aIR~aLD~~Gf---~~v~IMSYsaKyASa 300 (428)
.+.....+..+.+.+...+.....-++| +| +++++|.+.- .+-+++.+.|. .++.|+++-..-.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~---~~~~~~~~~g~~i~~~i~i~~~d~~~~~~ 220 (264)
T cd01537 149 PIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAANDDMAL---GALRALREAGLRVPDDISVIGFDGTPEAL 220 (264)
T ss_pred CcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH---HHHHHHHHhCCCCCCCeEEEeecCccHHH
Confidence 0000011111222222333333444556 56 7777776532 23457888898 589999987654443
No 361
>PRK08185 hypothetical protein; Provisional
Probab=38.85 E-value=41 Score=34.03 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=52.4
Q ss_pred CChHHHHHHHHhchhc-CCceEEe-------------cCCCchHHHHHHHHhhCCCCeEEEEechH-HHHHHHHHHCCCC
Q 014237 326 ANYREALVEAQADESE-GADILLV-------------KPGLPYLDVIRLLRDKYPLPIAAYQVSGE-YSMIKAGGALKMI 390 (428)
Q Consensus 326 aN~~EAlrE~~lDi~E-GADilMV-------------KPal~YLDII~~vk~~~~lPvaaYqVSGE-YaMIkaAa~~G~i 390 (428)
.+.+||.+-+ ++ |+|.|-| ||.+. +|+|+++++..++|++.-==||- -..++.|.+.|.-
T Consensus 149 t~peea~~f~----~~TgvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~ 223 (283)
T PRK08185 149 TDPEQAEDFV----SRTGVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVG 223 (283)
T ss_pred CCHHHHHHHH----HhhCCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCe
Confidence 3556654433 23 9999999 89987 99999999999999987766652 4568889999963
Q ss_pred ------chhhHHHHHHHHH
Q 014237 391 ------DEQRVMMESLMCL 403 (428)
Q Consensus 391 ------D~~~~vlEsL~~~ 403 (428)
|.+....+.+..+
T Consensus 224 KiNi~T~l~~a~~~~~~~~ 242 (283)
T PRK08185 224 KINISSDMKYAFFKKVREI 242 (283)
T ss_pred EEEeChHHHHHHHHHHHHH
Confidence 3344555554443
No 362
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=38.84 E-value=7.4 Score=36.97 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=66.1
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE----------eeec
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY----------TDVA 220 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vi----------tDVc 220 (428)
+.+-+. ++.+.++++.+.|++-|+- +. + +++...... ....+.+|.|..-+.-.|++=. .|+.
T Consensus 107 ~~~~~~-~i~~v~~~~~~~gl~vIlE-~~-l---~~~~~~~~~-~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~ 179 (236)
T PF01791_consen 107 EDEVIE-EIAAVVEECHKYGLKVILE-PY-L---RGEEVADEK-KPDLIARAARIAAELGADFVKTSTGKPVGATPEDVE 179 (236)
T ss_dssp HHHHHH-HHHHHHHHHHTSEEEEEEE-EC-E---CHHHBSSTT-HHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhcCCcEEEEE-Ee-c---Cchhhcccc-cHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHH
Confidence 334343 4666677777889986666 64 3 222211111 2335677888877766676554 2333
Q ss_pred ccCCCCC-----CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 014237 221 LDPYSSD-----GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (428)
Q Consensus 221 Lc~YTsh-----GHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVA 264 (428)
+..-... |++||+-..|. |.+++..-.++|+.+-++|||.+.
T Consensus 180 ~~~~~~~~~~~p~~~~Vk~sGGi--~~~~~~~~l~~a~~~i~aGa~~~G 226 (236)
T PF01791_consen 180 LMRKAVEAAPVPGKVGVKASGGI--DAEDFLRTLEDALEFIEAGADRIG 226 (236)
T ss_dssp HHHHHHHTHSSTTTSEEEEESSS--SHHHHHHSHHHHHHHHHTTHSEEE
T ss_pred HHHHHHHhcCCCcceEEEEeCCC--ChHHHHHHHHHHHHHHHcCChhHH
Confidence 2211222 89999865554 899999999999999999998853
No 363
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.53 E-value=97 Score=33.06 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=35.3
Q ss_pred HHHHHHHHhchhcCCceEEecCC----CchHHHHHHHHhhC-CCCeEEEEec
Q 014237 329 REALVEAQADESEGADILLVKPG----LPYLDVIRLLRDKY-PLPIAAYQVS 375 (428)
Q Consensus 329 ~EAlrE~~lDi~EGADilMVKPa----l~YLDII~~vk~~~-~lPvaaYqVS 375 (428)
.+.+.++..=++.|+|+|.+=-+ ....++|+.+|+++ ++++.+=+|+
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~ 203 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV 203 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecC
Confidence 45566666667899999996543 34569999999999 6998776663
No 364
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=38.50 E-value=2.2e+02 Score=30.06 Aligned_cols=135 Identities=22% Similarity=0.262 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCC
Q 014237 242 DETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (428)
Q Consensus 242 D~Tl~~Lak~Als~A~AGADiVAPSDM--------MDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap 313 (428)
+.++-.-.+.|+ +.|||.|+=.=. |=-.+++|.+.-++.|+- +.+|+|.- .+
T Consensus 145 ~~~l~~sVedAl---rLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlP-lv~~~YpR----------------G~ 204 (348)
T PRK09250 145 DQALTASVEDAL---RLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLA-TVLWSYLR----------------NS 204 (348)
T ss_pred cccceecHHHHH---HCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCC-EEEEeccc----------------Cc
Confidence 444444456665 579998875222 223567777777778875 66678843 23
Q ss_pred CCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCC---chHHH---------------------HHHHHhhC---C
Q 014237 314 RFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGL---PYLDV---------------------IRLLRDKY---P 366 (428)
Q Consensus 314 ~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal---~YLDI---------------------I~~vk~~~---~ 366 (428)
.+.|...|-.+|....-|-|-+ .+=|||||=||+-. .|-.| ++.+-+.+ +
T Consensus 205 ~i~~~~d~~~~~d~Ia~AaRia---aELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~ 281 (348)
T PRK09250 205 AFKKDGDYHTAADLTGQANHLA---ATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGR 281 (348)
T ss_pred ccCCcccccccHHHHHHHHHHH---HHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCC
Confidence 3345557788887776666655 47899999999753 33333 44444544 5
Q ss_pred CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHH---HHhcccEeeh
Q 014237 367 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCL---RRAGADIILT 413 (428)
Q Consensus 367 lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~---kRAGAd~IiT 413 (428)
+||.. || ..+. ++ +-++|..... +++||..|+.
T Consensus 282 vpVvi---AG--------G~k~--~~-~e~L~~v~~a~~~i~aGa~Gv~i 317 (348)
T PRK09250 282 RGLIN---SG--------GASK--GE-DDLLDAVRTAVINKRAGGMGLII 317 (348)
T ss_pred ceEEE---eC--------CCCC--CH-HHHHHHHHHHHHhhhcCCcchhh
Confidence 67653 33 2332 43 3468888888 8899988764
No 365
>PRK05660 HemN family oxidoreductase; Provisional
Probab=38.44 E-value=1.9e+02 Score=29.75 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=65.6
Q ss_pred echhhhHHHHHHHHHHcCCCeE---EEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 014237 153 LGWRHGLVQEVAKARDVGVNSV---VLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (428)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv---~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGH 229 (428)
++.. .+.+.++.+.+.|++.| ++||. |....+ -+.+.++.+.+.-|+-+-+-...+-|-|.-.|
T Consensus 140 ~~~~-~~~~ai~~~~~~G~~~v~~dli~Gl-pgqt~~-----------~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~ 206 (378)
T PRK05660 140 HGPD-EAKRAAKLAQGLGLRSFNLDLMHGL-PDQSLE-----------EALDDLRQAIALNPPHLSWYQLTIEPNTLFGS 206 (378)
T ss_pred CCHH-HHHHHHHHHHHcCCCeEEEEeecCC-CCCCHH-----------HHHHHHHHHHhcCCCeEEeeccEeccCCcccc
Confidence 3443 47778888999999754 78994 753222 26678888888889877777776666665554
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhh
Q 014237 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 296 (428)
Q Consensus 230 cGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaK 296 (428)
- .....+.|+..+ .-..+.+.|.++||.+..|=.||-+
T Consensus 207 ~----~~~~~~~~~~~~-------------------------~~~~~~~~L~~~Gy~~yei~~fa~~ 244 (378)
T PRK05660 207 R----PPVLPDDDALWD-------------------------IFEQGHQLLTAAGYQQYETSAYAKP 244 (378)
T ss_pred c----CCCCcCHHHHHH-------------------------HHHHHHHHHHHcCCcEeecccccCC
Confidence 1 111112222211 2345677888899988888888654
No 366
>PRK06256 biotin synthase; Validated
Probab=38.15 E-value=1.2e+02 Score=30.35 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=34.8
Q ss_pred ee-echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeE
Q 014237 151 YR-LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (428)
Q Consensus 151 ~r-~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~ 214 (428)
|+ ++.+ +++++++++.+.|++.+.+..--- .+.+. +---+.+.++.||+. +++-
T Consensus 88 ~~~~s~e-eI~~~~~~~~~~g~~~~~l~~~g~----~p~~~----~~~~~~e~i~~i~~~-~~i~ 142 (336)
T PRK06256 88 YAWLDIE-ELIEAAKEAIEEGAGTFCIVASGR----GPSGK----EVDQVVEAVKAIKEE-TDLE 142 (336)
T ss_pred ecCCCHH-HHHHHHHHHHHCCCCEEEEEecCC----CCCch----HHHHHHHHHHHHHhc-CCCc
Confidence 55 5886 699999999999998887753100 01000 001366789999887 5553
No 367
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=38.13 E-value=3.4e+02 Score=25.38 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=62.3
Q ss_pred HHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHH
Q 014237 256 ARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEA 335 (428)
Q Consensus 256 A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~ 335 (428)
.++|||.|-=...+-.....+++..++.|-+.+ +.|--.|-- . +.. .|.+.+- +.+..+.+++.
T Consensus 91 ~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i-~~sid~~~~--------~-v~~---~g~~~~~---~~~~~~~~~~~ 154 (230)
T TIGR00007 91 LDLGVDRVIIGTAAVENPDLVKELLKEYGPERI-VVSLDARGG--------E-VAV---KGWLEKS---EVSLEELAKRL 154 (230)
T ss_pred HHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcE-EEEEEEECC--------E-EEE---cCCcccC---CCCHHHHHHHH
Confidence 347888443333333445667777777764433 333222210 0 000 1222211 13444444444
Q ss_pred HhchhcCCceEEec---C----CCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcc
Q 014237 336 QADESEGADILLVK---P----GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 408 (428)
Q Consensus 336 ~lDi~EGADilMVK---P----al~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGA 408 (428)
.+.|+|-+++= . ..+-+|.++++++..++|+.+ +| |.-+. |-+..++..||
T Consensus 155 ---~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia---~G-----------Gi~~~-----~di~~~~~~Ga 212 (230)
T TIGR00007 155 ---EELGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIA---SG-----------GVSSI-----DDLIALKKLGV 212 (230)
T ss_pred ---HhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEE---eC-----------CCCCH-----HHHHHHHHCCC
Confidence 36799965532 1 124589999999999999765 22 23332 22334456899
Q ss_pred cEeeh
Q 014237 409 DIILT 413 (428)
Q Consensus 409 d~IiT 413 (428)
|.++-
T Consensus 213 dgv~i 217 (230)
T TIGR00007 213 YGVIV 217 (230)
T ss_pred CEEEE
Confidence 98763
No 368
>PLN02489 homocysteine S-methyltransferase
Probab=38.00 E-value=26 Score=35.80 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.2
Q ss_pred CchhhHHHHHHHHHHHhcccEeeh
Q 014237 390 IDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
++..+.|.+.+..+.+||||+|.|
T Consensus 51 l~~Pe~V~~vH~~yl~AGAdvI~T 74 (335)
T PLN02489 51 ITSPHLIRKVHLDYLEAGADIIIT 74 (335)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEe
Confidence 567789999999999999998865
No 369
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.90 E-value=78 Score=34.44 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=43.2
Q ss_pred HHHHHHHhchhcCCceEEecCCCch----HHHHHHHHhhCC--CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHH
Q 014237 330 EALVEAQADESEGADILLVKPGLPY----LDVIRLLRDKYP--LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCL 403 (428)
Q Consensus 330 EAlrE~~lDi~EGADilMVKPal~Y----LDII~~vk~~~~--lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~ 403 (428)
+++..+..=++.|+|+|-|=-+--+ ++.|+.+|+.++ ++|.|=+| .+ .|....+
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV---------------~t-----~e~a~~l 301 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV---------------VD-----REGFRYL 301 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc---------------cC-----HHHHHHH
Confidence 4444454446789999988666566 999999999985 67777555 22 2333345
Q ss_pred HHhcccEe
Q 014237 404 RRAGADII 411 (428)
Q Consensus 404 kRAGAd~I 411 (428)
..||||.|
T Consensus 302 i~aGAd~I 309 (502)
T PRK07107 302 AEAGADFV 309 (502)
T ss_pred HHcCCCEE
Confidence 57899997
No 370
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=37.85 E-value=89 Score=34.34 Aligned_cols=115 Identities=11% Similarity=0.189 Sum_probs=71.5
Q ss_pred CCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHh-chhcCCceEEecCCCchHHHHHHHHhh
Q 014237 286 QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQA-DESEGADILLVKPGLPYLDVIRLLRDK 364 (428)
Q Consensus 286 ~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~l-Di~EGADilMVKPal~YLDII~~vk~~ 364 (428)
..+-.+|||- +..=||+.+ |.|.++...-.=-..-++++..+.. =..+|+|+|+--=+ --..| |+.
T Consensus 15 p~~~~~~~~~-----l~~~~~~i~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsrG~--ta~~i---~~~ 81 (538)
T PRK15424 15 PVIWTVSVSR-----LFELFRDIS---LEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAAGS--NGAYL---KSR 81 (538)
T ss_pred CeEEEeeHHH-----HHHHHHHHH---HhcCCCceEEehhhhHHHHHHHHHHHHhhCCCcEEEECch--HHHHH---Hhh
Confidence 4456677754 667777776 5555555443334567888888843 44679999987544 33444 446
Q ss_pred CCCCeEEEEechHHHHHHHHHHCCC--------------------------------CchhhHHHHHHHHHHHhcccEee
Q 014237 365 YPLPIAAYQVSGEYSMIKAGGALKM--------------------------------IDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 365 ~~lPvaaYqVSGEYaMIkaAa~~G~--------------------------------iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
+++||.--+||| |-++++-..+.- +...+-+-+.+..+|+.|+++||
T Consensus 82 ~~iPVv~i~~s~-~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~G~~~vv 160 (538)
T PRK15424 82 LSVPVILIKPSG-FDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGIEAVV 160 (538)
T ss_pred CCCCEEEecCCH-hHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEE
Confidence 788888888888 444444211110 12233456777888888888887
Q ss_pred hh
Q 014237 413 TY 414 (428)
Q Consensus 413 TY 414 (428)
.-
T Consensus 161 G~ 162 (538)
T PRK15424 161 GA 162 (538)
T ss_pred cC
Confidence 53
No 371
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=37.79 E-value=2.4e+02 Score=26.48 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCcc
Q 014237 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (428)
Q Consensus 240 dND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRk 319 (428)
+..+.++.++++|.. .|+|-|.-+ -|.+...|+.|...+ +. .++. .+-|. |.
T Consensus 14 ~t~~~i~~~~~~a~~---~~~~av~v~---p~~v~~~~~~l~~~~-----~~-----v~~~---------~~fp~-g~-- 65 (203)
T cd00959 14 ATEEDIRKLCDEAKE---YGFAAVCVN---PCFVPLAREALKGSG-----VK-----VCTV---------IGFPL-GA-- 65 (203)
T ss_pred CCHHHHHHHHHHHHH---cCCCEEEEc---HHHHHHHHHHcCCCC-----cE-----EEEE---------EecCC-CC--
Confidence 466777778888776 467777633 477777777774322 11 1111 11111 21
Q ss_pred ccCCCCCChHHHHHHHHhchhcCCceEEecCCCc---------hHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCC
Q 014237 320 TYQMNPANYREALVEAQADESEGADILLVKPGLP---------YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 389 (428)
Q Consensus 320 tYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~---------YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~ 389 (428)
...+.-+.|++.=++.|||-|.+=+-.. .++-|.++++.. ++|+-+- .+.|.
T Consensus 66 ------~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI------------~e~~~ 127 (203)
T cd00959 66 ------TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVI------------LETGL 127 (203)
T ss_pred ------CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEE------------EecCC
Confidence 1234455666666778999987744433 345566666665 4776552 23344
Q ss_pred CchhhHHHHHHHHHHHhcccEeehh--cH
Q 014237 390 IDEQRVMMESLMCLRRAGADIILTY--FA 416 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~IiTY--fA 416 (428)
++. +.+.-.-.....+|||+|=|+ |.
T Consensus 128 l~~-~~i~~a~ria~e~GaD~IKTsTG~~ 155 (203)
T cd00959 128 LTD-EEIIKACEIAIEAGADFIKTSTGFG 155 (203)
T ss_pred CCH-HHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 443 345555566778999999998 87
No 372
>PRK08444 hypothetical protein; Provisional
Probab=37.76 E-value=1e+02 Score=31.99 Aligned_cols=106 Identities=18% Similarity=0.273 Sum_probs=66.0
Q ss_pred eeechhhhhcc--ccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEE-e---cCCC---chHHHHH
Q 014237 289 SIMSYTAKYAS--SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILL-V---KPGL---PYLDVIR 359 (428)
Q Consensus 289 ~IMSYsaKyAS--afYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilM-V---KPal---~YLDII~ 359 (428)
.++.| +.+++ |-|--|+.-- ++...|-|+ .+|.+.++..-.+.|+.=+. | .|.. -|+|+|+
T Consensus 51 ~~In~-TN~C~~~C~FCaf~~~~------~~~~~y~ls---~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir 120 (353)
T PRK08444 51 RHINP-TNICADVCKFCAFSAHR------KNPNPYTMS---HEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFK 120 (353)
T ss_pred CCccc-ccccccCCccCCCccCC------CCCccccCC---HHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHH
Confidence 45566 44443 5555554311 233458774 46666666666678887544 3 3443 5799999
Q ss_pred HHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 360 LLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 360 ~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
.+|+.++ +-+.|+.. +|..- .|-..|+.. -|.|..+|.||.|-+-
T Consensus 121 ~Ik~~~p~i~i~a~s~-~Ei~~--~a~~~g~~~-----~e~l~~LkeAGl~~~~ 166 (353)
T PRK08444 121 KIKEAYPNLHVKAMTA-AEVDF--LSRKFGKSY-----EEVLEDMLEYGVDSMP 166 (353)
T ss_pred HHHHHCCCceEeeCCH-HHHHH--HHHHcCCCH-----HHHHHHHHHhCcccCC
Confidence 9999884 88888765 33222 223466543 4788899999999654
No 373
>PRK05481 lipoyl synthase; Provisional
Probab=37.47 E-value=71 Score=31.90 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=48.3
Q ss_pred ceeeEEEeeCCC-C-c--ccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHH
Q 014237 129 FVYPLFIHEGEE-D-T--PIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIW 204 (428)
Q Consensus 129 LI~PlFV~eg~~-~-~--~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr 204 (428)
-..-|.+.+|=+ . . .|+.-.| ..++.+ +++++++++.+.|++-|.|-|..-++..| .| ..-+.+.++
T Consensus 53 ~~~fi~is~GC~~~C~FC~i~~~r~-~s~~~e-eI~~ea~~l~~~G~kEI~L~gg~~~d~~~-~~------~~~l~~Ll~ 123 (289)
T PRK05481 53 TATFMILGDICTRRCPFCDVATGRP-LPLDPD-EPERVAEAVARMGLKYVVITSVDRDDLPD-GG------AQHFAETIR 123 (289)
T ss_pred eEEEEEecccccCCCCCceeCCCCC-CCCCHH-HHHHHHHHHHHCCCCEEEEEEeeCCCccc-cc------HHHHHHHHH
Confidence 334445666632 1 1 3333334 336786 69999999999999999998851110111 01 014678899
Q ss_pred HHHHHCCCeE
Q 014237 205 LLKDRYPDLV 214 (428)
Q Consensus 205 ~iK~~~Pdl~ 214 (428)
.||+.+|++-
T Consensus 124 ~I~~~~p~ir 133 (289)
T PRK05481 124 AIRELNPGTT 133 (289)
T ss_pred HHHhhCCCcE
Confidence 9999999774
No 374
>PRK07534 methionine synthase I; Validated
Probab=37.41 E-value=28 Score=35.78 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=22.0
Q ss_pred CchhhHHHHHHHHHHHhcccEeeh
Q 014237 390 IDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
++..+.|.+.+..+.+||||+|+|
T Consensus 41 i~~Pe~V~~vH~~Yl~AGAdiI~T 64 (336)
T PRK07534 41 EDHPDNITALHQGFVDAGSDIILT 64 (336)
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEe
Confidence 577789999999999999999986
No 375
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=37.41 E-value=64 Score=31.88 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC
Q 014237 243 ETVHQLCKQAVSQARAGADVVSP 265 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAP 265 (428)
.|+-.-.+||+.-|+|||++|+|
T Consensus 144 ~T~vfs~~Qa~~aa~Aga~~isp 166 (252)
T cd00439 144 VTLIFSIAQYEAVADAGTSVASP 166 (252)
T ss_pred eeeecCHHHHHHHHHcCCCEEEE
Confidence 45555578999999999999999
No 376
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=37.35 E-value=66 Score=31.69 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=34.6
Q ss_pred CChHHHHHHHHhchhcCCceEEecCCCchH-----HHH---HHHHhhCCCCeEEEEec
Q 014237 326 ANYREALVEAQADESEGADILLVKPGLPYL-----DVI---RLLRDKYPLPIAAYQVS 375 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMVKPal~YL-----DII---~~vk~~~~lPvaaYqVS 375 (428)
.|.+|+++.++.=.+-|||.+||=|-..|. .|+ +.+.+ ++|+..||.-
T Consensus 75 ~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P 130 (279)
T cd00953 75 LNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYP 130 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCc
Confidence 367888888888888999999996643332 233 34445 8999999853
No 377
>PLN02361 alpha-amylase
Probab=37.30 E-value=1.3e+02 Score=31.81 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccC
Q 014237 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDP 223 (428)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~------------v~rAIr~iK~~~Pdl~VitDVcLc~ 223 (428)
+.|.+.+..+.++|+.+|-|-|+.. .. +.+.|++..+ +.+.|++++++ .+-||.|+.+-.
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P~~~--~~---~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~--gi~vi~D~V~NH 100 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPPPSQ--SL---APEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQY--NVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCc--CC---CCCCCCcccccccCcccCCHHHHHHHHHHHHHc--CCEEEEEEcccc
Confidence 3699999999999999999977521 11 2244544322 45566666655 699999998854
No 378
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.18 E-value=52 Score=31.80 Aligned_cols=66 Identities=21% Similarity=0.414 Sum_probs=46.1
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe--e
Q 014237 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT--D 218 (428)
Q Consensus 141 ~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit--D 218 (428)
+..|..+||+. -..|+.+++++|..-|.|||. . . .| =..-++.||.-||++-++. -
T Consensus 106 ~~~i~~iPG~~-------TptEi~~a~~~Ga~~vKlFPa-~-~----~g---------g~~~lk~l~~p~p~~~~~ptGG 163 (212)
T PRK05718 106 EGPIPLIPGVS-------TPSELMLGMELGLRTFKFFPA-E-A----SG---------GVKMLKALAGPFPDVRFCPTGG 163 (212)
T ss_pred HcCCCEeCCCC-------CHHHHHHHHHCCCCEEEEccc-h-h----cc---------CHHHHHHHhccCCCCeEEEeCC
Confidence 35889999992 255689999999999999984 1 1 11 1356889999999865553 2
Q ss_pred e---cccCCCCCC
Q 014237 219 V---ALDPYSSDG 228 (428)
Q Consensus 219 V---cLc~YTshG 228 (428)
| .+-+|-..|
T Consensus 164 V~~~ni~~~l~ag 176 (212)
T PRK05718 164 ISPANYRDYLALP 176 (212)
T ss_pred CCHHHHHHHHhCC
Confidence 2 355666666
No 379
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.14 E-value=66 Score=31.70 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHcCCCeecCCCCCCch
Q 014237 252 AVSQARAGADVVSPSDMMDGR 272 (428)
Q Consensus 252 Als~A~AGADiVAPSDMMDGR 272 (428)
++.-.+|||++|--|=.-=|+
T Consensus 201 ~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 201 TLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred HHHHHHcCCCEEEEecccCCC
Confidence 455568999988766554454
No 380
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=37.08 E-value=99 Score=32.02 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=35.9
Q ss_pred hHHHHHHHHhchhcC--CceEEecCCCc----hHHHHHHHHhhCCCC-eEEEEe
Q 014237 328 YREALVEAQADESEG--ADILLVKPGLP----YLDVIRLLRDKYPLP-IAAYQV 374 (428)
Q Consensus 328 ~~EAlrE~~lDi~EG--ADilMVKPal~----YLDII~~vk~~~~lP-vaaYqV 374 (428)
..|.+..+..-++.| +|+|.+=++-- -+|.|+.+|+.++.| +.+=+|
T Consensus 92 t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV 145 (321)
T TIGR01306 92 KACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV 145 (321)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC
Confidence 345556666668888 89999999654 489999999999877 666555
No 381
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=37.00 E-value=84 Score=32.66 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHcCCCeE---EEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 014237 158 GLVQEVAKARDVGVNSV---VLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv---~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~ 234 (428)
++.+.++.+.+.|++.| ++|| +|....+ -+.+.++.+.+.-|+-+-+.-..+-|-|.-.+. +
T Consensus 152 ~~~~ai~~l~~~G~~~v~~dlI~G-lPgqt~e-----------~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~--~- 216 (400)
T PRK07379 152 DIFAAVDLIHQAGIENFSLDLISG-LPHQTLE-----------DWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQ--Y- 216 (400)
T ss_pred HHHHHHHHHHHcCCCeEEEEeecC-CCCCCHH-----------HHHHHHHHHHcCCCCEEEEecceecCCchhHHH--h-
Confidence 37778888999999854 6789 4743111 255678888777787666655555555543321 1
Q ss_pred CCCcc--ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechh
Q 014237 235 EDGVI--MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (428)
Q Consensus 235 ~~g~I--dND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYs 294 (428)
+.|.. .+++. .--....+++.|.++||.+..|-.||
T Consensus 217 ~~g~~~~~~~~~------------------------~~~~~~~~~~~L~~~Gy~~yeisnfa 254 (400)
T PRK07379 217 QPGKAPLPSDET------------------------TAAMYRLAQEILTQAGYEHYEISNYA 254 (400)
T ss_pred hcCCCCCCCHHH------------------------HHHHHHHHHHHHHHcCCceeeeeheE
Confidence 11211 11211 11233457788999999999999887
No 382
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=36.89 E-value=1.3e+02 Score=30.74 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=43.8
Q ss_pred HHHHhchhcCCceEEecCCC-------------chHHHHHHHHhhCC-----CCeEEEEechHHHHHHHHHHCCCCchhh
Q 014237 333 VEAQADESEGADILLVKPGL-------------PYLDVIRLLRDKYP-----LPIAAYQVSGEYSMIKAGGALKMIDEQR 394 (428)
Q Consensus 333 rE~~lDi~EGADilMVKPal-------------~YLDII~~vk~~~~-----lPvaaYqVSGEYaMIkaAa~~G~iD~~~ 394 (428)
.+....++++||.|.+==+- .+.+|++.+|+..+ +||.+ -+|- ++ +.+
T Consensus 160 ~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~v-Klsp-----------~~-~~~- 225 (344)
T PRK05286 160 LICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLV-KIAP-----------DL-SDE- 225 (344)
T ss_pred HHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEE-EeCC-----------CC-CHH-
Confidence 33344456678887763111 35699999999886 99885 3321 12 222
Q ss_pred HHHHHHHHHHHhcccEeehh
Q 014237 395 VMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 395 ~vlEsL~~~kRAGAd~IiTY 414 (428)
-+.|....+..+|||.|+..
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~ 245 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIAT 245 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEe
Confidence 36778888889999988753
No 383
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=36.78 E-value=63 Score=32.05 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=52.1
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcce
Q 014237 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (428)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcG 231 (428)
|++.+ .+++.++++.+.|+..|-| +|..|. ..|. -+.+-++.||+++|++ +..-|+|+-
T Consensus 145 ~~~~~-~~~~~~~~~~~~Ga~~i~l--------~DT~G~--~~P~-~v~~lv~~l~~~~~~~---------~i~~H~Hnd 203 (274)
T cd07938 145 EVPPE-RVAEVAERLLDLGCDEISL--------GDTIGV--ATPA-QVRRLLEAVLERFPDE---------KLALHFHDT 203 (274)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEE--------CCCCCc--cCHH-HHHHHHHHHHHHCCCC---------eEEEEECCC
Confidence 35565 5889999999999887554 344454 2232 2456788999999873 445688853
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014237 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (428)
Q Consensus 232 il~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPS 266 (428)
. | .=..-++.-.+||||+|=-|
T Consensus 204 ~----G---------lA~AN~laA~~aGa~~id~t 225 (274)
T cd07938 204 R----G---------QALANILAALEAGVRRFDSS 225 (274)
T ss_pred C----C---------hHHHHHHHHHHhCCCEEEEe
Confidence 2 2 01122566679999987544
No 384
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=36.75 E-value=1.9e+02 Score=25.62 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 014237 327 NYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
+..+++.... .+..|+|++= |.+.-+++++.+++...+|+....-..+-.....+.+.|..|
T Consensus 33 ~~~~~~~~~~---~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt~~~~~~~~~~~~~~ga~~ 97 (225)
T PRK10529 33 TLQRGLLEAA---TRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADD 97 (225)
T ss_pred CHHHHHHHHh---cCCCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHcCCCE
Confidence 4556655442 3457999884 677788999999987789998876555555566677788654
No 385
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=36.61 E-value=6.2e+02 Score=27.94 Aligned_cols=189 Identities=17% Similarity=0.188 Sum_probs=110.4
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeee---cccC
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV---ALDP 223 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDV---cLc~ 223 (428)
-+|=.|++.+ +.+..++.+-+.|+.++=..|- +.-|. ..-|-.+.+ -..+|.|++..|+.-+..=. .+--
T Consensus 18 Sl~atr~~t~-d~l~ia~~ld~~G~~siE~~GG---atfd~--~~rfl~Edp-werlr~lr~~~~nt~lqmL~Rg~N~vG 90 (499)
T PRK12330 18 SLMATRMAME-DMVGACEDIDNAGYWSVECWGG---ATFDA--CIRFLNEDP-WERLRTFRKLMPNSRLQMLLRGQNLLG 90 (499)
T ss_pred cccCccCCHH-HHHHHHHHHHhcCCCEEEecCC---cchhh--hhcccCCCH-HHHHHHHHHhCCCCeEEEEEcccccCC
Confidence 3455688886 5999999999999999988753 22332 111222333 35799999999985544211 1333
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhccc
Q 014237 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASS 300 (428)
Q Consensus 224 YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM---DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASa 300 (428)
|+. --|..++.-++.|. ++|.|++--.|=+ +..-.+|+.+ .++|..-..-++|.. |
T Consensus 91 y~~-------------y~ddvv~~fv~~a~---~~Gidi~RIfd~lndv~nl~~ai~~v-k~ag~~~~~~i~yt~---s- 149 (499)
T PRK12330 91 YRH-------------YEDEVVDRFVEKSA---ENGMDVFRVFDALNDPRNLEHAMKAV-KKVGKHAQGTICYTV---S- 149 (499)
T ss_pred ccC-------------cchhHHHHHHHHHH---HcCCCEEEEEecCChHHHHHHHHHHH-HHhCCeEEEEEEEec---C-
Confidence 421 13455566666654 5699986544333 4555555544 455654336667743 1
Q ss_pred cccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhc-hhcCCceEEecCCCch------HHHHHHHHhhC--CCCeEE
Q 014237 301 FYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQAD-ESEGADILLVKPGLPY------LDVIRLLRDKY--PLPIAA 371 (428)
Q Consensus 301 fYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lD-i~EGADilMVKPal~Y------LDII~~vk~~~--~lPvaa 371 (428)
|. .++ |-+.+.... ++-|||.|-+|=-.-. -++|+.+|+.+ ++|+.
T Consensus 150 ------------p~--------~t~----e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~- 204 (499)
T PRK12330 150 ------------PI--------HTV----EGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRIN- 204 (499)
T ss_pred ------------CC--------CCH----HHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEE-
Confidence 11 022 222232222 4579999988754333 47999999999 69975
Q ss_pred EEechH----HHHHHHHHHCC
Q 014237 372 YQVSGE----YSMIKAGGALK 388 (428)
Q Consensus 372 YqVSGE----YaMIkaAa~~G 388 (428)
+|---. .+-..+|+++|
T Consensus 205 ~H~Hnt~GlA~An~laAieAG 225 (499)
T PRK12330 205 LHCHSTTGVTLVSLMKAIEAG 225 (499)
T ss_pred EEeCCCCCcHHHHHHHHHHcC
Confidence 565322 33445567777
No 386
>PRK10200 putative racemase; Provisional
Probab=36.33 E-value=1.2e+02 Score=29.30 Aligned_cols=68 Identities=12% Similarity=0.018 Sum_probs=47.1
Q ss_pred HHHHHHHHhhC---CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee------hhcHHHHHHH
Q 014237 355 LDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL------TYFALQAARC 422 (428)
Q Consensus 355 LDII~~vk~~~---~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii------TYfA~e~a~w 422 (428)
--|++....+. ..|...++..---....+-.+.+|-+....+.|.+..+.++|||+|+ +||..++.++
T Consensus 20 ~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~ 96 (230)
T PRK10200 20 RLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESR 96 (230)
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHh
Confidence 33444444433 36777777666555544445578888899999999999999999997 5666655544
No 387
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=36.31 E-value=32 Score=34.16 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=42.3
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014237 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (428)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vi 216 (428)
++.+ ++++.+.++.+.|-..|=+... .|++|...+++ ....++++.|++++||++|-
T Consensus 23 ~tpe-Eia~~A~~c~~AGAa~vH~H~R-----~~~~G~~s~d~-~~~~e~~~~IR~~~pd~iv~ 79 (272)
T PF05853_consen 23 ITPE-EIAADAVACYEAGAAIVHIHAR-----DDEDGRPSLDP-ELYAEVVEAIRAACPDLIVQ 79 (272)
T ss_dssp -SHH-HHHHHHHHHHHHTESEEEE-EE------TTTS-EE--H-HHHHHHHHHHHHHSTTSEEE
T ss_pred CCHH-HHHHHHHHHHHcCCcEEEeecC-----CCCCCCcCCCH-HHHHHHHHHHHHHCCCeEEE
Confidence 4565 6999999999999998888653 26678877666 46778999999999998764
No 388
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=36.16 E-value=36 Score=33.72 Aligned_cols=147 Identities=29% Similarity=0.385 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCch-----------HHHHHHHHHHCCCCCceeechh--------hhhcccccc
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGR-----------VGAIRAALDAEGFQHVSIMSYT--------AKYASSFYG 303 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGR-----------V~aIR~aLD~~Gf~~v~IMSYs--------aKyASafYG 303 (428)
.-+..|+++....-.+|||.+= =|.|||+ |.++|+-++...|-||-.|--. +|---+.|-
T Consensus 14 ~dfanL~~e~~~~l~~GadwlH-lDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~t 92 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLH-LDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFT 92 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEE-EeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEE
Confidence 4467899999999999999986 5999997 8899999999999888777421 222222333
Q ss_pred chhhhhcC-------CCCCCCccccCCCCCChHHHHHHHHhchhcCCceEE---ecCCCc-------hHHHHHHHHhhCC
Q 014237 304 PFREALDS-------NPRFGDKKTYQMNPANYREALVEAQADESEGADILL---VKPGLP-------YLDVIRLLRDKYP 366 (428)
Q Consensus 304 PFRdAa~S-------ap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilM---VKPal~-------YLDII~~vk~~~~ 366 (428)
=.-|+.++ --+.|=|-.--+.|+-.-|.+.... +=.||++ |+||.- -++=++.+|++++
T Consensus 93 fH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~----~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp 168 (224)
T KOG3111|consen 93 FHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLA----EHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYP 168 (224)
T ss_pred EEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhh----ccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCC
Confidence 22344333 1112556677788888877766544 3556654 689842 2666777887775
Q ss_pred CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 367 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 367 lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
-+. -||-|- +=.++.-..-.|||++|+.
T Consensus 169 ~l~--ievDGG-----------------v~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 169 NLD--IEVDGG-----------------VGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred Cce--EEecCC-----------------cCcchHHHHHHcCCCEEEe
Confidence 443 455432 3345666777889998875
No 389
>PTZ00411 transaldolase-like protein; Provisional
Probab=36.04 E-value=49 Score=34.41 Aligned_cols=77 Identities=30% Similarity=0.408 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCch------------------------HHHHHHHHHHCCCCCceeechhhhhc
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGR------------------------VGAIRAALDAEGFQHVSIMSYTAKYA 298 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSDMMDGR------------------------V~aIR~aLD~~Gf~~v~IMSYsaKyA 298 (428)
.|+=.=..||+.-|+|||++|+| +=|| |..|.+.++.+|| ++-||+=|-|
T Consensus 165 ~TlvFS~~QA~aaaeAGa~~ISP---fVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~-~T~Im~ASfR-- 238 (333)
T PTZ00411 165 LTLLFSFAQAVACAQAGVTLISP---FVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGY-KTIVMGASFR-- 238 (333)
T ss_pred EeEecCHHHHHHHHHcCCCEEEe---ecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCC-CeEEEecccC--
Confidence 34444467999999999999999 2233 3456666666665 4566653322
Q ss_pred cccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhh
Q 014237 299 SSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK 364 (428)
Q Consensus 299 SafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~ 364 (428)
|..|.+. .-|+|.+-+=| +++.++.+.
T Consensus 239 ----------------------------n~~qi~~------laG~D~lTi~p-----~ll~~L~~~ 265 (333)
T PTZ00411 239 ----------------------------NTGEILE------LAGCDKLTISP-----KLLEELANT 265 (333)
T ss_pred ----------------------------CHHHHHH------HHCCCEEeCCH-----HHHHHHHhC
Confidence 6666554 26999998766 466666543
No 390
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=36.03 E-value=42 Score=34.50 Aligned_cols=81 Identities=26% Similarity=0.365 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC--CCC-----------------Cc--hHHHHHHHHHHCCCCCceeechhhhhcccc
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPS--DMM-----------------DG--RVGAIRAALDAEGFQHVSIMSYTAKYASSF 301 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPS--DMM-----------------DG--RV~aIR~aLD~~Gf~~v~IMSYsaKyASaf 301 (428)
.|+=.=..||+.-|+|||++|+|= -|. || .|..|.+.++..|+ ++-||+=|-
T Consensus 153 ~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~-~T~vmaASf------ 225 (313)
T cd00957 153 LTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGY-KTKVMGASF------ 225 (313)
T ss_pred eeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCC-CcEEEeccc------
Confidence 344445689999999999999992 111 11 24555555656665 455553221
Q ss_pred ccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhC
Q 014237 302 YGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY 365 (428)
Q Consensus 302 YGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~ 365 (428)
+|..|.+. .-|+|.+.+=| +++.++.+..
T Consensus 226 ------------------------Rn~~~v~~------laG~d~~Ti~p-----~ll~~L~~~~ 254 (313)
T cd00957 226 ------------------------RNIGQILA------LAGCDYLTISP-----ALLEELKNST 254 (313)
T ss_pred ------------------------CCHHHHHH------HhCCCeEEcCH-----HHHHHHHhCC
Confidence 26677653 36999999877 5677776543
No 391
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.01 E-value=2.1e+02 Score=28.22 Aligned_cols=93 Identities=20% Similarity=0.135 Sum_probs=55.1
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014237 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (428)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTs 226 (428)
.||+-.+.-+ -..+.++.+.+.|+..|-+|-.+. | =..+.++++..|+.. +.+.. |+| |+.
T Consensus 82 ~~~~~~~p~~-~~~~di~~~~~~g~~~iri~~~~~----~---------~~~~~~~i~~ak~~G--~~v~~--~i~-~~~ 142 (275)
T cd07937 82 LVGYRHYPDD-VVELFVEKAAKNGIDIFRIFDALN----D---------VRNLEVAIKAVKKAG--KHVEG--AIC-YTG 142 (275)
T ss_pred ccCccCCCcH-HHHHHHHHHHHcCCCEEEEeecCC----h---------HHHHHHHHHHHHHCC--CeEEE--EEE-ecC
Confidence 4554445443 357788889999999998875322 1 023445667777664 33333 332 111
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc
Q 014237 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG 271 (428)
Q Consensus 227 hGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDG 271 (428)
. +. - |.+.+.+.+-...++|||.|.=.|++=.
T Consensus 143 ~---------~~-~---~~~~~~~~~~~~~~~Ga~~i~l~DT~G~ 174 (275)
T cd07937 143 S---------PV-H---TLEYYVKLAKELEDMGADSICIKDMAGL 174 (275)
T ss_pred C---------CC-C---CHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 1 11 1 3445555555567889999999998764
No 392
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=35.74 E-value=60 Score=33.59 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCC--CCceeec-------------hhhhh-----ccccccc----
Q 014237 249 CKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF--QHVSIMS-------------YTAKY-----ASSFYGP---- 304 (428)
Q Consensus 249 ak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf--~~v~IMS-------------YsaKy-----ASafYGP---- 304 (428)
..++....++|.++|...|+ ..++-..++.||++-- .+++|.+ |.-.. .=.|+||
T Consensus 74 ~~~~~~~L~aG~NVV~s~~~-h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~g~s~ 152 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDSFDN-HRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGPGLSQ 152 (324)
T ss_pred HHHHHHHHHcCCCEEECCCc-ccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCCCcCc
Confidence 35667778999999999884 7777788888887654 3688876 22211 1258887
Q ss_pred -hhhhhcCCCCCCCccccCCCCCChHHHHHHHH
Q 014237 305 -FREALDSNPRFGDKKTYQMNPANYREALVEAQ 336 (428)
Q Consensus 305 -FRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~ 336 (428)
+.+|+..-+.-.|-..|.++ ..+||..+.
T Consensus 153 ghs~a~~~~~Gv~~a~~~tip---~~dal~~v~ 182 (324)
T TIGR01921 153 GHSDAVRRIDGVKKAVQYTLP---SEDALEKAR 182 (324)
T ss_pred hhhhhhcccCCcccceEEEEe---hHHHHHHHH
Confidence 66777777766678899998 778887776
No 393
>PRK12346 transaldolase A; Provisional
Probab=35.62 E-value=51 Score=34.08 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCCeecC
Q 014237 245 VHQLCKQAVSQARAGADVVSP 265 (428)
Q Consensus 245 l~~Lak~Als~A~AGADiVAP 265 (428)
+=.=..||+.-|+|||+.|+|
T Consensus 156 liFS~~Qa~~aa~AGa~~ISP 176 (316)
T PRK12346 156 LLFSFAQARACAEAGVFLISP 176 (316)
T ss_pred EecCHHHHHHHHHcCCCEEEe
Confidence 333467999999999999999
No 394
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.47 E-value=1.5e+02 Score=31.10 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=29.4
Q ss_pred CCCChHHHHHHHHhchhcCCceEEecC----------CCchHHHHHHHHhhCCCCeEE
Q 014237 324 NPANYREALVEAQADESEGADILLVKP----------GLPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 324 dpaN~~EAlrE~~lDi~EGADilMVKP----------al~YLDII~~vk~~~~lPvaa 371 (428)
+|.|..|-.+.+ +++|+|+|.|=. +--+.++++.+++ .++||.+
T Consensus 139 ~~~~~~e~a~~l---~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa 192 (368)
T PRK08649 139 SPQRAQELAPTV---VEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV 192 (368)
T ss_pred CCcCHHHHHHHH---HHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE
Confidence 455555544444 589999999932 2247887666665 7999976
No 395
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=35.43 E-value=1.6e+02 Score=31.05 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHCCCC---CceeechhhhhccccccchhhhhcCCCCCCCccccC--CCC-CChHHHHHHHHhchhcCCc
Q 014237 271 GRVGAIRAALDAEGFQ---HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQ--MNP-ANYREALVEAQADESEGAD 344 (428)
Q Consensus 271 GRV~aIR~aLD~~Gf~---~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQ--mdp-aN~~EAlrE~~lDi~EGAD 344 (428)
=+|..||+++++.||+ ++.|+-=++ ||.||.. .+-.|. .+- -+.+||++ ...++.|--+
T Consensus 214 ~~l~~i~eAi~~~g~~~G~dv~i~lD~a--as~~~~~------------~~y~~~~~~~~~~t~~eai~-~~~~l~e~~~ 278 (408)
T cd03313 214 EALDLLVEAIEKAGYEPGKKIAIALDVA--ASEFYDE------------GKYVYDSDEGKKLTSEELID-YYKELVKKYP 278 (408)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEehh--hhhhccc------------CcceeccCCCcccCHHHHHH-HHHHHHHhCC
Confidence 3577899999999885 578876554 4677731 122221 010 24466554 3334444467
Q ss_pred eEEecCCCch--HHHHHHHHhhC--CCCeEEEEec-hHHHHHHHHHHCCCCch-----hh--HHHHHHHHH---HHhccc
Q 014237 345 ILLVKPGLPY--LDVIRLLRDKY--PLPIAAYQVS-GEYSMIKAGGALKMIDE-----QR--VMMESLMCL---RRAGAD 409 (428)
Q Consensus 345 ilMVKPal~Y--LDII~~vk~~~--~lPvaaYqVS-GEYaMIkaAa~~G~iD~-----~~--~vlEsL~~~---kRAGAd 409 (428)
+..+.=-++. ++=.+++++++ .+|+++-..+ -...-++.+.+.|+.|- .+ .+.|++... +.+|-.
T Consensus 279 i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~ 358 (408)
T cd03313 279 IVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYG 358 (408)
T ss_pred cEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCe
Confidence 8777744443 56788999997 8999887633 13455666777777664 22 255555544 677888
Q ss_pred Eeehhc
Q 014237 410 IILTYF 415 (428)
Q Consensus 410 ~IiTYf 415 (428)
++++..
T Consensus 359 ~~~sh~ 364 (408)
T cd03313 359 VVVSHR 364 (408)
T ss_pred EEccCC
Confidence 887543
No 396
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=35.34 E-value=3.7e+02 Score=27.41 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCC---------
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSD--------- 227 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~-Pdl~VitDVcLc~YTsh--------- 227 (428)
++.++++++++.|.+++-+ .| .+-|+++++.+ |++.++.|.+ .-||..
T Consensus 129 ~~~~~a~~~~~~Gf~~~Ki--Kv-------------------~~~v~avre~~G~~~~l~vDaN-~~w~~~~A~~~~~~l 186 (361)
T cd03322 129 ELLEAVERHLAQGYRAIRV--QL-------------------PKLFEAVREKFGFEFHLLHDVH-HRLTPNQAARFGKDV 186 (361)
T ss_pred HHHHHHHHHHHcCCCeEee--CH-------------------HHHHHHHHhccCCCceEEEECC-CCCCHHHHHHHHHHh
Confidence 5889999999999999886 11 34566666666 4566777765 445432
Q ss_pred Cccee--ecCCCccccHHHHHHHHH----------------HHHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCCCCCc
Q 014237 228 GHDGI--VREDGVIMNDETVHQLCK----------------QAVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288 (428)
Q Consensus 228 GHcGi--l~~~g~IdND~Tl~~Lak----------------~Als~A~-AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v 288 (428)
-..++ +.|--..++-+.+..|.+ ......+ -.+|++-|-=+--|=|...++..+-+--.++
T Consensus 187 ~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi 266 (361)
T cd03322 187 EPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGV 266 (361)
T ss_pred hhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCC
Confidence 11122 211111122233333332 2222233 3599999988887866666665554332334
Q ss_pred eee
Q 014237 289 SIM 291 (428)
Q Consensus 289 ~IM 291 (428)
.+|
T Consensus 267 ~~~ 269 (361)
T cd03322 267 RTG 269 (361)
T ss_pred eee
Confidence 443
No 397
>PRK15108 biotin synthase; Provisional
Probab=35.30 E-value=2e+02 Score=29.51 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=41.5
Q ss_pred cccCCCCCChHHHHHHHHhchhcCCceE-Ee----cCCC----chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC
Q 014237 319 KTYQMNPANYREALVEAQADESEGADIL-LV----KPGL----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 389 (428)
Q Consensus 319 ktYQmdpaN~~EAlrE~~lDi~EGADil-MV----KPal----~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~ 389 (428)
+.|.|+| +|.+..+..-.+.|+.=+ +| -|.. -|+|+|+.+|+ ..+++.+. +|.
T Consensus 72 ~~~~ls~---eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~-~~i~v~~s--------------~G~ 133 (345)
T PRK15108 72 AERLMEV---EQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKA-MGLETCMT--------------LGT 133 (345)
T ss_pred cccCCCH---HHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHh-CCCEEEEe--------------CCc
Confidence 3456766 676666666566677644 44 4532 25799999995 45554422 343
Q ss_pred CchhhHHHHHHHHHHHhcccE
Q 014237 390 IDEQRVMMESLMCLRRAGADI 410 (428)
Q Consensus 390 iD~~~~vlEsL~~~kRAGAd~ 410 (428)
++ -|.+..+|.||+|.
T Consensus 134 ls-----~e~l~~LkeAGld~ 149 (345)
T PRK15108 134 LS-----ESQAQRLANAGLDY 149 (345)
T ss_pred CC-----HHHHHHHHHcCCCE
Confidence 33 35566677777773
No 398
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=35.16 E-value=21 Score=33.86 Aligned_cols=54 Identities=30% Similarity=0.420 Sum_probs=41.7
Q ss_pred cCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 014237 341 EGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 341 EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTY 414 (428)
-..|+|=+=|| ....+|++++++++.|+.| -|+++.++-+.|. .+|||+.|=|.
T Consensus 116 ~~PD~vEilPg-~~p~vi~~i~~~~~~PiIA---------------GGLI~~~e~v~~a----l~aGa~aVSTS 169 (175)
T PF04309_consen 116 SKPDAVEILPG-VMPKVIKKIREETNIPIIA---------------GGLIRTKEDVEEA----LKAGADAVSTS 169 (175)
T ss_dssp HT-SEEEEESC-CHHHHHCCCCCCCSS-EEE---------------ESS--SHHHHHHH----CCTTCEEEEE-
T ss_pred cCCCEEEEchH-HHHHHHHHHHHhcCCCEEe---------------ecccCCHHHHHHH----HHcCCEEEEcC
Confidence 57899999999 6668999999999999976 6999998777765 47899998774
No 399
>TIGR00035 asp_race aspartate racemase.
Probab=35.09 E-value=44 Score=31.78 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=40.7
Q ss_pred hcCCCCCCCccccCCC--CCChHHHHHHHHhchh-cCCceEEecCCCchHHHHHHHHhhCCCCeEE
Q 014237 309 LDSNPRFGDKKTYQMN--PANYREALVEAQADES-EGADILLVKPGLPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 309 a~Sap~fgDRktYQmd--paN~~EAlrE~~lDi~-EGADilMVKPal~YLDII~~vk~~~~lPvaa 371 (428)
+-+.|.+.||..|+.+ +.+..+.+.++...++ .|+|++.+==..+.. .+.++++.+++|+..
T Consensus 39 ~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaCNTah~-~~~~l~~~~~iPii~ 103 (229)
T TIGR00035 39 LFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFIIMPCNTAHK-FAEDIQKAIGIPLIS 103 (229)
T ss_pred eeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEEECCccHHH-HHHHHHHhCCCCEec
Confidence 4456777888888873 4467778888877766 799999874322211 134666677777653
No 400
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=35.08 E-value=84 Score=31.18 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHHHh
Q 014237 356 DVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLC 424 (428)
Q Consensus 356 DII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~a~wL~ 424 (428)
+.++.+++ .+++|.+|-| |.. |.+..+.+.|+|.|||-+-..+.++|.
T Consensus 252 ~~v~~~~~-~G~~v~vWTV----------------Nd~----~~~~~l~~~GVdgIiTD~P~~l~~~l~ 299 (300)
T cd08612 252 SLFRHLQK-RGIQVYGWVL----------------NDE----EEFERAFELGADGVMTDYPTKLREFLD 299 (300)
T ss_pred HHHHHHHH-CCCEEEEeec----------------CCH----HHHHHHHhcCCCEEEeCCHHHHHHHHh
Confidence 56777665 4888999987 432 455667778999999999988888874
No 401
>PRK00077 eno enolase; Provisional
Probab=34.99 E-value=1.7e+02 Score=30.88 Aligned_cols=126 Identities=18% Similarity=0.279 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHCCCC---CceeechhhhhccccccchhhhhcCCCCCCCccccCCC--CCChHHHHHHHHhchhcCCce
Q 014237 271 GRVGAIRAALDAEGFQ---HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMN--PANYREALVEAQADESEGADI 345 (428)
Q Consensus 271 GRV~aIR~aLD~~Gf~---~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmd--paN~~EAlrE~~lDi~EGADi 345 (428)
=++.+||+++++.||+ ++.||==++ ||.||. + ..|..+ --+.+|+++.... +.|--++
T Consensus 217 e~l~~lreAi~~ag~~~G~di~l~lD~a--as~~~~---~-----------~~y~~~~~~~s~~e~~~~~~~-l~e~y~i 279 (425)
T PRK00077 217 EALDLILEAIEKAGYKPGEDIALALDCA--ASEFYK---D-----------GKYVLEGEGLTSEEMIDYLAE-LVDKYPI 279 (425)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEehh--hhhccc---C-----------CeeeccCCcCCHHHHHHHHHH-HHhhCCc
Confidence 4688899999999985 577775443 577881 1 123221 0255565554433 3344667
Q ss_pred EEecCCCch--HHHHHHHHhhC--CCCeEEEEec-hHHHHHHHHHHCCCCchh-------hHHHHHHHHH---HHhcccE
Q 014237 346 LLVKPGLPY--LDVIRLLRDKY--PLPIAAYQVS-GEYSMIKAGGALKMIDEQ-------RVMMESLMCL---RRAGADI 410 (428)
Q Consensus 346 lMVKPal~Y--LDII~~vk~~~--~lPvaaYqVS-GEYaMIkaAa~~G~iD~~-------~~vlEsL~~~---kRAGAd~ 410 (428)
..+.=-++- +|=.+++++++ .+|++.-..+ -...-++.+.+.|+.|-= -.+.|++... +.+|-..
T Consensus 280 ~~iEdPl~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~ 359 (425)
T PRK00077 280 VSIEDGLDENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTA 359 (425)
T ss_pred EEEEcCCCCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeE
Confidence 777733433 56788899998 6999887743 235666677777776641 1255555544 5556666
Q ss_pred eeh
Q 014237 411 ILT 413 (428)
Q Consensus 411 IiT 413 (428)
+++
T Consensus 360 ~vs 362 (425)
T PRK00077 360 VVS 362 (425)
T ss_pred EEe
Confidence 663
No 402
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=34.93 E-value=1.1e+02 Score=31.53 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=47.1
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCc
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGH 229 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~-Pdl~VitDVcLc~YTshGH 229 (428)
++++.+ .+++.++.+.+.|...|.| +|..|. ..|+ -+.+-++.||+++ |++- ..-|+|
T Consensus 139 ~~~~~e-~l~~~a~~~~~~Ga~~i~i--------~DT~G~--~~P~-~v~~~v~~l~~~l~~~i~---------ig~H~H 197 (337)
T PRK08195 139 HMAPPE-KLAEQAKLMESYGAQCVYV--------VDSAGA--LLPE-DVRDRVRALRAALKPDTQ---------VGFHGH 197 (337)
T ss_pred cCCCHH-HHHHHHHHHHhCCCCEEEe--------CCCCCC--CCHH-HHHHHHHHHHHhcCCCCe---------EEEEeC
Confidence 356664 5788888888888877554 233442 2232 2556778888877 4543 345888
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 014237 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (428)
Q Consensus 230 cGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAP 265 (428)
+-.= +. ..-++.-.+|||++|==
T Consensus 198 nnlG-----------la--~ANslaAi~aGa~~iD~ 220 (337)
T PRK08195 198 NNLG-----------LG--VANSLAAVEAGATRIDG 220 (337)
T ss_pred CCcc-----------hH--HHHHHHHHHhCCCEEEe
Confidence 5321 11 12244556799996633
No 403
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=34.79 E-value=1.1e+02 Score=31.90 Aligned_cols=104 Identities=25% Similarity=0.387 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCc--CCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAY--NDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~--~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
.+.++.+++.|. +-+++ +---|+.| +.+ |.|-+...--.+|+. ..|+++|||. |+++++|
T Consensus 150 ~~~l~~ll~~g~--ipvi~---pi~~~~~g-~~~nvnaD~~A~~lA~al~a--~kli~ltdv~----------Gv~~~~g 211 (429)
T TIGR01890 150 TEGIRRQLDAGS--IVLLS---PLGHSPTG-ETFNLDMEDVATSVAISLKA--DKLIYFTLSP----------GISDPDG 211 (429)
T ss_pred HHHHHHHHHCCC--eEEEC---CcccCCCC-CEEEeCHHHHHHHHHHHcCC--CEEEEEeCCC----------cccCCCC
Confidence 577888999998 43433 32344455 344 444444444444432 1599999985 3343234
Q ss_pred ccccHH---HHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechh
Q 014237 238 VIMNDE---TVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (428)
Q Consensus 238 ~IdND~---Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYs 294 (428)
.+...- .++.|.+. + -++||=+.|.+..++| ++|-..+-|++..
T Consensus 212 ~~i~~i~~~~~~~l~~~-----------~-~~~~~~~kl~~a~~a~-~~gv~~v~i~~g~ 258 (429)
T TIGR01890 212 TLAAELSPQEVESLAER-----------L-GSETTRRLLSAAVKAC-RGGVHRSHIVSYA 258 (429)
T ss_pred CCcccCCHHHHHHHHHh-----------c-cCCCcHHHHHHHHHHH-HcCCCeEEEECCC
Confidence 332222 33333332 1 2467777788777777 4677788888874
No 404
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=34.76 E-value=1.7e+02 Score=26.81 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014237 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit 217 (428)
+...+-+..+..=.+|.|+|--+ +.+.++.+.|++.||++.|+.
T Consensus 34 l~~~ll~~~~~~~~~v~llG~~~---------------~~~~~~~~~l~~~yp~l~i~g 77 (171)
T cd06533 34 LMPALLELAAQKGLRVFLLGAKP---------------EVLEKAAERLRARYPGLKIVG 77 (171)
T ss_pred HHHHHHHHHHHcCCeEEEECCCH---------------HHHHHHHHHHHHHCCCcEEEE
Confidence 55555554443336777878522 568889999999999999876
No 405
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=34.47 E-value=2e+02 Score=32.48 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCC
Q 014237 159 LVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgv-----------i~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YTs 226 (428)
..+.++.+.+.|...|-|-+- +.+..+|+.|-+--|---++...+++||+++| |+.|..=+....|..
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 344556678899999988432 12346788886554556677789999999985 676766666555421
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014237 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (428)
Q Consensus 227 hGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD 267 (428)
+| .+-++++ +.|-...++|+|+|.-|.
T Consensus 633 ---------~g-~~~~~~~----~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 633 ---------GG-NTPDDAV----EIARAFKAAGADLIDVSS 659 (765)
T ss_pred ---------CC-CCHHHHH----HHHHHHHhcCCcEEEeCC
Confidence 12 2334444 334445788999998773
No 406
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=34.45 E-value=4.5e+02 Score=25.73 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=37.4
Q ss_pred HHHHHHHHCC--CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHH-HcCCCeec
Q 014237 202 TIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA-RAGADVVS 264 (428)
Q Consensus 202 AIr~iK~~~P--dl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A-~AGADiVA 264 (428)
.++.|++..| +++-++|..--|| |.=.-++=.+.+.+.+-.+. +.|||++.
T Consensus 13 v~~~l~~~~p~~~~iy~~D~~~~PY------------G~ks~~~i~~~~~~~~~~L~~~~g~d~iv 66 (251)
T TIGR00067 13 VLKEIRKQLPKEHYIYVGDTKRFPY------------GEKSPEFILEYVLELLTFLKERHNIKLLV 66 (251)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCC------------CCCCHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4678888898 4889999999999 32234555566666667777 88998753
No 407
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=34.42 E-value=1.8e+02 Score=28.86 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=43.4
Q ss_pred HHHHHHhchhc-CCceEEe---cC------CC---------chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 014237 331 ALVEAQADESE-GADILLV---KP------GL---------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 331 AlrE~~lDi~E-GADilMV---KP------al---------~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
-+.++...++| |||+|=+ =| +. .+.+|++.+|+..++||.+= .+ .|
T Consensus 114 ~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vK-l~--------------~~ 178 (299)
T cd02940 114 DWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAK-LT--------------PN 178 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEE-CC--------------CC
Confidence 34445455554 8888765 11 11 36789999999999998853 22 12
Q ss_pred hhhHHHHHHHHHHHhcccEee
Q 014237 392 EQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 392 ~~~~vlEsL~~~kRAGAd~Ii 412 (428)
.. -+.|....+..+|||.|+
T Consensus 179 ~~-~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 179 IT-DIREIARAAKEGGADGVS 198 (299)
T ss_pred ch-hHHHHHHHHHHcCCCEEE
Confidence 22 356777778899999986
No 408
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.34 E-value=76 Score=30.34 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=39.5
Q ss_pred hcCCceEEecCCC--chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcH
Q 014237 340 SEGADILLVKPGL--PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFA 416 (428)
Q Consensus 340 ~EGADilMVKPal--~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA 416 (428)
+.+|+.+-+=+.. ..-+.++.++. +++|.+|-|-. . |.+..+.+.|+|.|||-+-
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~v~~~~~--g~~v~~WTVn~----------------~----~~~~~l~~~GVdgIiTD~P 231 (235)
T cd08565 175 ALKAHIVAVEQSLLAATWELVRAAVP--GLRLGVWTVND----------------D----SLIRYWLACGVRQLTTDRP 231 (235)
T ss_pred hccCcEEccCcccccCCHHHHHHHhC--CCEEEEEccCC----------------H----HHHHHHHHcCCCEEEeCCc
Confidence 3577777766653 44667777753 89999999832 1 4456778889999999764
No 409
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=34.30 E-value=34 Score=36.14 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCee---cCCCCCCchHHHHHHHHHHCCCCCceeec
Q 014237 245 VHQLCKQAVSQARAGADVV---SPSDMMDGRVGAIRAALDAEGFQHVSIMS 292 (428)
Q Consensus 245 l~~Lak~Als~A~AGADiV---APSDMMDGRV~aIR~aLD~~Gf~~v~IMS 292 (428)
++...+|-..+++||||+| .|+.==---++.|++.|++.|. ++++++
T Consensus 30 v~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~-~iPlVA 79 (359)
T PF04551_consen 30 VEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGS-PIPLVA 79 (359)
T ss_dssp HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT--SS-EEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCC-CCCeee
No 410
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=34.18 E-value=30 Score=35.10 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=74.4
Q ss_pred CCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHH
Q 014237 124 LSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTI 203 (428)
Q Consensus 124 L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAI 203 (428)
.....|=-|+||.+.+..+.+-+.| .+.+.++.+.++ .++|||+ -....+. .+..+...-+-..-+
T Consensus 166 ~~~~~l~aP~~v~s~e~~~~l~~e~---------~i~~vl~~~~~~---Dial~GI-G~~~~~~-~s~~~~~g~l~~~~~ 231 (318)
T PRK15418 166 CSVSIIPAPLRASSAEIARTLRNEN---------SVRDVMLAAQAA---DVAIVGI-GAVNQKD-DATILRSGYISQGEQ 231 (318)
T ss_pred CCeEEeccCeecCCHHHHHHHHhCh---------HHHHHHHHHHhC---CEEEEEe-cCCCCCC-CCceeecCCCCHHHH
Confidence 3455666788887665555555543 233444445554 5889995 4321111 122232222445667
Q ss_pred HHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHH----HHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHH
Q 014237 204 WLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDE----TVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAA 279 (428)
Q Consensus 204 r~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~----Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~a 279 (428)
+.+++ -..+.|+|..-|..+|-- +. + .-.||. +++.|.+.- .+|+=. =-...+.||+.+
T Consensus 232 ~~L~~----~gAVGdi~g~f~D~~G~~--v~-~-~~~~~r~igi~le~Lk~ip--------~~I~vA-~G~~K~~Ai~aA 294 (318)
T PRK15418 232 LMIGR----KGAVGDILGYFFDADGEL--VP-D-IKIHNELIGLPLSSLKTIP--------TVIGVA-GGEEKAEAIIAA 294 (318)
T ss_pred HHHHH----CCceEEEeeeEECCCCCC--cC-C-cccccceecCCHHHHcCCC--------CEEEEe-cCHHHHHHHHHH
Confidence 77776 458999998877555531 10 0 001222 344554432 222221 124679999999
Q ss_pred HHHCCCCCceeec
Q 014237 280 LDAEGFQHVSIMS 292 (428)
Q Consensus 280 LD~~Gf~~v~IMS 292 (428)
| ..||-|+-|.-
T Consensus 295 L-rgg~i~~LITD 306 (318)
T PRK15418 295 L-KGGYINALVTD 306 (318)
T ss_pred H-hcCCCCEEEEC
Confidence 9 46788887754
No 411
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=33.91 E-value=1.9e+02 Score=29.03 Aligned_cols=104 Identities=20% Similarity=0.270 Sum_probs=0.0
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHH-HHHHHHHHCCCCCceeechhhhhccccccchhhhh
Q 014237 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVG-AIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (428)
Q Consensus 231 Gil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~-aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa 309 (428)
||+ +.++-+.|-=+.-..+.--.++++||+|||=-.----|=. .+-+.+...-+.+..+|+
T Consensus 71 GIi-Krd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MA----------------- 132 (229)
T COG3010 71 GII-KRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMA----------------- 132 (229)
T ss_pred EEE-ecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEe-----------------
Q ss_pred cCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceE----------EecCCCchHHHHHHHHhhCCCCeEE
Q 014237 310 DSNPRFGDKKTYQMNPANYREALVEAQADESEGADIL----------LVKPGLPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 310 ~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADil----------MVKPal~YLDII~~vk~~~~lPvaa 371 (428)
|-+|.+|++-.-.+ |+|+| =.||.-|=++.++++.+ .+.+|.|
T Consensus 133 --------------D~St~ee~l~a~~~----G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIA 185 (229)
T COG3010 133 --------------DCSTFEEGLNAHKL----GFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIA 185 (229)
T ss_pred --------------ccCCHHHHHHHHHc----CCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEe
No 412
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=33.70 E-value=62 Score=32.37 Aligned_cols=62 Identities=29% Similarity=0.423 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHH---------------HHHHHCCCCCceeechhhhhccccc
Q 014237 241 NDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIR---------------AALDAEGFQHVSIMSYTAKYASSFY 302 (428)
Q Consensus 241 ND~Tl~~Lak~Als~A~AGADiVA-PSDMMDGRV~aIR---------------~aLD~~Gf~~v~IMSYsaKyASafY 302 (428)
-|+.=+.|...|..+.++|||+++ |..-|-=-.-.|+ +++...|+++|+++.=-.--.+.||
T Consensus 57 w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY 134 (230)
T COG1794 57 WDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFY 134 (230)
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhcCCceeEEeeccchHHhHHH
Confidence 356678899999999999999876 4444433222333 3445569999999986656678888
No 413
>PLN02417 dihydrodipicolinate synthase
Probab=33.68 E-value=94 Score=30.65 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=64.4
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccch
Q 014237 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (428)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM--------DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPF 305 (428)
++||.|| -+.+..+++. +.+.|+|-|.+.+-. +=|...++.+.+..+ .+++|+.=
T Consensus 14 ~~~g~iD-~~~~~~~i~~---l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~-~~~pvi~g------------ 76 (280)
T PLN02417 14 LPDGRFD-LEAYDSLVNM---QIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-GKIKVIGN------------ 76 (280)
T ss_pred CCCCCcC-HHHHHHHHHH---HHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEEE------------
Confidence 3456666 4445555443 355899988776543 234455555555433 34554422
Q ss_pred hhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------HHHHHHHHhhCCCCeEEEEech
Q 014237 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 376 (428)
Q Consensus 306 RdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 376 (428)
.--.|.+|+++.++.=.+-|||.||+=|-..| .+-.+.+.+.. |+..||.-+
T Consensus 77 -----------------v~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~--pi~lYn~P~ 135 (280)
T PLN02417 77 -----------------TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG--PTIIYNVPG 135 (280)
T ss_pred -----------------CCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC--CEEEEEChh
Confidence 11237888888888778899999999775322 22333455544 999997754
No 414
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=33.46 E-value=2.4e+02 Score=24.62 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 014237 327 NYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
+..+++.... +...|++++- |++.-+++++.+++.. ..|+....-..+......+.+.|..|
T Consensus 32 ~~~~~~~~~~---~~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~ 97 (219)
T PRK10336 32 QGRQGKEALY---SAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADD 97 (219)
T ss_pred CHHHHHHHHh---hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhCCCCe
Confidence 4555555432 3457999886 5566789999999865 68999988778888888888888765
No 415
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.31 E-value=84 Score=29.88 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHHH
Q 014237 355 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 423 (428)
Q Consensus 355 LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~a~wL 423 (428)
-++|+.++++ ++++.+|-|.-+ |.+.-+.+.|.|.|+|-+...+.+||
T Consensus 202 ~~~v~~~~~~-G~~v~vWTVN~~--------------------~~~~~l~~~gVdgIiTD~p~~~~~~~ 249 (249)
T cd08561 202 PRFVRAAHAA-GLEVHVWTVNDP--------------------AEMRRLLDLGVDGIITDRPDLLLEVL 249 (249)
T ss_pred HHHHHHHHHC-CCEEEEEecCCH--------------------HHHHHHHhcCCCEEEcCCHHHHHhhC
Confidence 4788888875 899999998432 44456677799999999988777664
No 416
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=33.28 E-value=1.9e+02 Score=26.06 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=51.2
Q ss_pred CCCceeechhhhhccccccchhhhhcCCCC-CCCccccCCCCCChHHHHHHHHhchhcCCceEEecCC-CchHHHHHHHH
Q 014237 285 FQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYQMNPANYREALVEAQADESEGADILLVKPG-LPYLDVIRLLR 362 (428)
Q Consensus 285 f~~v~IMSYsaKyASafYGPFRdAa~Sap~-fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPa-l~YLDII~~vk 362 (428)
.+++.|+.....|...+..-|++++..... .-....|..+..+....+.++.. .++|.|++=-. .....+++.++
T Consensus 135 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~---~~~~~vi~~~~~~~~~~~~~~~~ 211 (298)
T cd06268 135 VKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKA---AGPDAVFLAGYGGDAALFLKQAR 211 (298)
T ss_pred CCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHh---cCCCEEEEccccchHHHHHHHHH
Confidence 455555554444444555555555533210 00112233333455566666543 47888887544 56678888887
Q ss_pred hhC-CCCeEEEEechHHHHH
Q 014237 363 DKY-PLPIAAYQVSGEYSMI 381 (428)
Q Consensus 363 ~~~-~lPvaaYqVSGEYaMI 381 (428)
+.- ++++.....+.+-..+
T Consensus 212 ~~g~~~~~~~~~~~~~~~~~ 231 (298)
T cd06268 212 EAGLKVPIVGGDGAAAPALL 231 (298)
T ss_pred HcCCCCcEEecCccCCHHHH
Confidence 643 6888877666554443
No 417
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=33.23 E-value=1.6e+02 Score=30.02 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=26.3
Q ss_pred hhcCCceEEecCCC---------chHHHHHHHHhhCCCCeEE
Q 014237 339 ESEGADILLVKPGL---------PYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 339 i~EGADilMVKPal---------~YLDII~~vk~~~~lPvaa 371 (428)
.+.|+|+|.|=+.. ...|.|+++|+..++||.+
T Consensus 158 ~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~ 199 (312)
T PRK10550 158 QQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIA 199 (312)
T ss_pred HhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEE
Confidence 35799999995432 1579999999999999876
No 418
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=33.17 E-value=2.8e+02 Score=30.17 Aligned_cols=98 Identities=21% Similarity=0.254 Sum_probs=70.0
Q ss_pred CCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHH-HHhhCCCCeEE---EEechHHHHHHHHHHCCCCch-hhHHHH
Q 014237 324 NPANYREALVEAQADESEGADILLVKPGLPYLDVIRL-LRDKYPLPIAA---YQVSGEYSMIKAGGALKMIDE-QRVMME 398 (428)
Q Consensus 324 dpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~-vk~~~~lPvaa---YqVSGEYaMIkaAa~~G~iD~-~~~vlE 398 (428)
|-.|.++=++.+..=++-|||-||==--.--||=||+ +-+.+++||+. ||+-.|+.- ...|. .+-+++
T Consensus 72 ~~~d~~~E~~K~~~A~~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~-------~~~~mt~d~~~~ 144 (423)
T TIGR00190 72 DTSDIEEEVEKALIAIKYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHG-------AVEDMDEDDMFR 144 (423)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcC-------ChhhCCHHHHHH
Confidence 4457778889999999999999998777777888875 55778999884 777666531 23222 257788
Q ss_pred HHHHHHHhcccEeehh--cHHHHHHHHhccCC
Q 014237 399 SLMCLRRAGADIILTY--FALQAARCLCGEKR 428 (428)
Q Consensus 399 sL~~~kRAGAd~IiTY--fA~e~a~wL~~~~~ 428 (428)
.+..=-+-|.|++--. ...+.++.|++.+|
T Consensus 145 ~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R 176 (423)
T TIGR00190 145 AIEKQAKDGVDFMTIHAGVLLEYVERLKRSGR 176 (423)
T ss_pred HHHHHHHhCCCEEEEccchhHHHHHHHHhCCC
Confidence 8888888899986332 34677777765443
No 419
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=32.64 E-value=46 Score=37.31 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=36.7
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCCCceeech
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMSY 293 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiV--APSDMMD-GRV~aIR~aLD~~Gf~~v~IMSY 293 (428)
.-|-++|| +|....++|||||| +=-+|=| --+..||+.|.+.|+ ++++++=
T Consensus 41 T~D~~atv----~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~-~iPLVAD 94 (606)
T PRK00694 41 TTDVDGTV----RQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGI-SIPLVAD 94 (606)
T ss_pred cccHHHHH----HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCC-CCCEEee
Confidence 33445554 56678899999997 3333333 457899999999997 6999874
No 420
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=32.53 E-value=74 Score=30.92 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=33.6
Q ss_pred CCCCChHHHHHHHHhchhcCCceEEecCCCch-----HHHHHHHHhhC-CCCeEE
Q 014237 323 MNPANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAA 371 (428)
Q Consensus 323 mdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-----LDII~~vk~~~-~lPvaa 371 (428)
+|..|.+||+.=+ ..+.+..|+ +|=|++- +++|+++|+.| +.+|++
T Consensus 10 LD~~~~~~A~~l~-~~l~~~v~~--iKVG~~L~~~~G~~~i~~lk~~~~~~~Ifl 61 (218)
T PRK13305 10 LDHTSLEAAQRDV-TLLKDHVDI--VEAGTILCLNEGLGAVKALREQCPDKIIVA 61 (218)
T ss_pred eCCCCHHHHHHHH-HHccccCCE--EEECHHHHHHhCHHHHHHHHHhCCCCEEEE
Confidence 5778889998844 457666666 6766543 79999999987 467763
No 421
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.51 E-value=3e+02 Score=28.69 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhCCCCeEEEEe--chHHH-------HHHHHHHCCCCchhhHHHHHHHH-HHHhcccEeehhcH
Q 014237 354 YLDVIRLLRDKYPLPIAAYQV--SGEYS-------MIKAGGALKMIDEQRVMMESLMC-LRRAGADIILTYFA 416 (428)
Q Consensus 354 YLDII~~vk~~~~lPvaaYqV--SGEYa-------MIkaAa~~G~iD~~~~vlEsL~~-~kRAGAd~IiTYfA 416 (428)
.-+.|+++++ .++.|.+|-| +|-|. -.-.... +...-+.+-+.. ++++|.|.|+|=|-
T Consensus 280 ~~~~v~~Ah~-~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~GvDGvftD~p 347 (356)
T cd08560 280 PSEYAKAAKA-AGLDIITWTLERSGPLASGGGWYYQTIEDVI----NNDGDMYNVLDVLARDVGILGIFSDWP 347 (356)
T ss_pred CHHHHHHHHH-cCCEEEEEEeecCcccccCcccccccccccc----cccccHHHHHHHHHHhcCCCEEEccCC
Confidence 4577777776 5899999999 32221 1101111 112223333333 45999999998664
No 422
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.49 E-value=2.4e+02 Score=28.53 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHH
Q 014237 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGA 275 (428)
Q Consensus 197 g~v~rAIr~iK~~~Pd-l~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~a 275 (428)
|-+..+++.+|+++|+ ..|+++| +| .+||+..+++|||+|-=..| ....
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VEv--------------------~t-------leea~~A~~~GaDiI~LDn~---~~e~ 215 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIEC--------------------ES-------LEEAKNAMNAGADIVMCDNM---SVEE 215 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEe--------------------CC-------HHHHHHHHHcCCCEEEECCC---CHHH
Confidence 4578899999999994 7677654 21 34677788999999985444 4555
Q ss_pred HHHHHHH--CCCCCcee
Q 014237 276 IRAALDA--EGFQHVSI 290 (428)
Q Consensus 276 IR~aLD~--~Gf~~v~I 290 (428)
|+++... .++.++.|
T Consensus 216 l~~~v~~~~~~~~~~~i 232 (273)
T PRK05848 216 IKEVVAYRNANYPHVLL 232 (273)
T ss_pred HHHHHHHhhccCCCeEE
Confidence 6666554 44444433
No 423
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=32.36 E-value=2.5e+02 Score=24.37 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 014237 327 NYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
+..+++..+. +...|+|++= |.+..+++++.+++.. .+|+....-...-.....+.+.|+.|
T Consensus 30 ~~~~~~~~~~---~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~~~~~~~~~~~~~~Ga~~ 95 (218)
T TIGR01387 30 NGRDGLHLAL---KDDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTARDSVADKVKGLDLGADD 95 (218)
T ss_pred CHHHHHHHHh---cCCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEcCCCHHHHHHHHHcCCCe
Confidence 5566665442 3457888875 6667889999999754 69999987777777888888888754
No 424
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=32.31 E-value=50 Score=33.64 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHCCCeEEEeeec-ccCCCCC----------CcceeecCCCccccHHHHHHHHH------------
Q 014237 194 NDNGLVPRTIWLLKDRYPDLVIYTDVA-LDPYSSD----------GHDGIVREDGVIMNDETVHQLCK------------ 250 (428)
Q Consensus 194 ~~~g~v~rAIr~iK~~~Pdl~VitDVc-Lc~YTsh----------GHcGil~~~g~IdND~Tl~~Lak------------ 250 (428)
|.|.+|..--+.|--..+|.=|++=|| -|||.+. |-.||.+=--.-..|-+...-.+
T Consensus 63 naN~iv~em~~eiLp~v~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVem 142 (268)
T PF09370_consen 63 NANEIVMEMAREILPVVKDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEM 142 (268)
T ss_dssp EHHHHHHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHH
T ss_pred CHhHHHHHHHHhhhhhccCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHH
Q ss_pred -------------------HHHHHHHcCCCeecC
Q 014237 251 -------------------QAVSQARAGADVVSP 265 (428)
Q Consensus 251 -------------------~Als~A~AGADiVAP 265 (428)
||...++|||||+.+
T Consensus 143 i~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~ 176 (268)
T PF09370_consen 143 IRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVA 176 (268)
T ss_dssp HHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEe
No 425
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.19 E-value=1.3e+02 Score=28.95 Aligned_cols=151 Identities=15% Similarity=0.216 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC---CeEEEeeecccCCCCCCcceeec
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP---DLVIYTDVALDPYSSDGHDGIVR 234 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P---dl~VitDVcLc~YTshGHcGil~ 234 (428)
.+++.++.+++.||+.+=+ . ..++ + .-.+|+.|+++|| +++|=
T Consensus 26 ~a~~~~~al~~~Gi~~iEi----t--~~~~---------~-a~~~i~~l~~~~~~~p~~~vG------------------ 71 (213)
T PRK06552 26 EALKISLAVIKGGIKAIEV----T--YTNP---------F-ASEVIKELVELYKDDPEVLIG------------------ 71 (213)
T ss_pred HHHHHHHHHHHCCCCEEEE----E--CCCc---------c-HHHHHHHHHHHcCCCCCeEEe------------------
Confidence 5899999999999998766 1 1111 1 2368999999984 55542
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCC
Q 014237 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (428)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~ 314 (428)
-|.|.|-+ |+-...+|||+++---.+-+ .+-+...++|. +++. .
T Consensus 72 -aGTV~~~~-------~~~~a~~aGA~FivsP~~~~----~v~~~~~~~~i---~~iP---------------------G 115 (213)
T PRK06552 72 -AGTVLDAV-------TARLAILAGAQFIVSPSFNR----ETAKICNLYQI---PYLP---------------------G 115 (213)
T ss_pred -eeeCCCHH-------HHHHHHHcCCCEEECCCCCH----HHHHHHHHcCC---CEEC---------------------C
Confidence 26666655 44455689999764333332 22223434443 2221 1
Q ss_pred CCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-HHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCch
Q 014237 315 FGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPY-LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDE 392 (428)
Q Consensus 315 fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-LDII~~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~iD~ 392 (428)
-.+..|+++. .+.|||+|-+=|+..+ ++-|+.++..++ +|+.+ -|-++
T Consensus 116 ----------~~T~~E~~~A----~~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---------------tGGI~- 165 (213)
T PRK06552 116 ----------CMTVTEIVTA----LEAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---------------TGGVN- 165 (213)
T ss_pred ----------cCCHHHHHHH----HHcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---------------ECCCC-
Confidence 1245565544 3699999999665432 677899999886 88765 45566
Q ss_pred hhHHHHHHHHHHHhcccEee
Q 014237 393 QRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 393 ~~~vlEsL~~~kRAGAd~Ii 412 (428)
.|.+..+..+||+.+-
T Consensus 166 ----~~N~~~~l~aGa~~va 181 (213)
T PRK06552 166 ----LDNVKDWFAAGADAVG 181 (213)
T ss_pred ----HHHHHHHHHCCCcEEE
Confidence 3677788999999854
No 426
>TIGR00035 asp_race aspartate racemase.
Probab=32.12 E-value=1.5e+02 Score=28.18 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=40.0
Q ss_pred CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 366 PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 366 ~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
.+|+..++-.--..+.++-...+|-+....+++++..+.++|||+|+
T Consensus 34 ~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iv 80 (229)
T TIGR00035 34 HPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFII 80 (229)
T ss_pred CCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEE
Confidence 48888888886666767666688988899999999999999999986
No 427
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=32.12 E-value=3.3e+02 Score=26.91 Aligned_cols=105 Identities=14% Similarity=0.195 Sum_probs=59.4
Q ss_pred hHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeecC
Q 014237 158 GLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVRE 235 (428)
Q Consensus 158 ~l~~~v~~~~~-~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YTshGHcGil~~ 235 (428)
.+.+.++.+.+ .|++.|++.|.. |+...=...=-.+.++...+... .+-||+=|
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~Gst--------GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagv---------------- 80 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGST--------GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQV---------------- 80 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc--------cccccCCHHHHHHHHHHHHHHhCCCCCEEecC----------------
Confidence 58899999999 999999999952 22111111112234444444443 24444421
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeec---CCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 014237 236 DGVIMNDETVHQLCKQAVSQARAGADVVS---PSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (428)
Q Consensus 236 ~g~IdND~Tl~~Lak~Als~A~AGADiVA---PSD---MMDGRV~aIR~aLD~~Gf~~v~IMSYs 294 (428)
|. .+.+.-.++|-...++|||.|. |.- .-|+-+...++..+.. +.+||-|-
T Consensus 81 -g~----~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~---~lPv~iYn 137 (293)
T PRK04147 81 -GS----VNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSA---DNPMIVYN 137 (293)
T ss_pred -CC----CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhC---CCCEEEEe
Confidence 11 1233334455555788998653 321 1267777777777653 56888773
No 428
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=32.08 E-value=61 Score=33.49 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC
Q 014237 243 ETVHQLCKQAVSQARAGADVVSP 265 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAP 265 (428)
.|+=-=..||+.-|+|||+.|+|
T Consensus 153 ~TliFS~~Qa~aaa~AGa~~ISP 175 (317)
T TIGR00874 153 LTLLFSFVQAIACAEAKVTLISP 175 (317)
T ss_pred eeeecCHHHHHHHHHcCCCEEEe
Confidence 34444467999999999999999
No 429
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=31.98 E-value=5.1e+02 Score=25.56 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcc--cCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPT--GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~--Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~ 235 (428)
.+.+.+..+.++||+.|++..= +..++.. -..-++ -...-|+.||+.++++.|- ++. | ..||.-.-
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~G--D~~~~~~~~~~~~f~---~a~~Li~~i~~~~~~f~ig--~a~--~-Peghp~~~-- 141 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRG--DPPKGEGTPTPGGFN---YASELVEFIRNEFGDFDIG--VAA--Y-PEKHPEAP-- 141 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC--CCCCCCCCCCCCCCC---CHHHHHHHHHHhcCCeeEE--EEe--C-CCCCCCCC--
Confidence 4888889999999999996543 2122211 111122 2445668888877754332 122 2 33453221
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch-HHHHHHHHHHCCC
Q 014237 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR-VGAIRAALDAEGF 285 (428)
Q Consensus 236 ~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGR-V~aIR~aLD~~Gf 285 (428)
+.++-++.|. .-.+||||.+=--=--|-. +...++.+.+.|.
T Consensus 142 ----~~~~~~~~L~----~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi 184 (272)
T TIGR00676 142 ----NLEEDIENLK----RKVDAGADYAITQLFFDNDDYYRFVDRCRAAGI 184 (272)
T ss_pred ----CHHHHHHHHH----HHHHcCCCeEeeccccCHHHHHHHHHHHHHcCC
Confidence 1234455554 3457999988777777744 5567777888886
No 430
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=31.95 E-value=99 Score=32.84 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=47.9
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcC---cCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 014237 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA---YNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (428)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A---~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGH 229 (428)
|+++..-...++.+.+.|++.+.+ |.+.+..-..-.+++ -+.+..+.+++.++|+.+++++.+-=+.+|- ..||
T Consensus 210 y~~~p~~pTvld~l~~aG~~V~~V-Gki~DiF~g~Glt~a~~~~~~~~~~~~~l~aL~~~~~~lif~nl~d~D~--~~GH 286 (381)
T TIGR01696 210 YALKPFAPTVLQKLKDEGHDVISI-GKIADIYDGEGITKKVRTTSNMDGMDATIKEMKEDFTGISFTNLVDFDA--LWGH 286 (381)
T ss_pred CCCCCCCCCHHHHHHHCCCeEEEE-ccHHhEecCCCcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEeCCCcc--ccCC
Confidence 455432345778899999987766 654332222223332 2334567899999998888877665555653 2388
Q ss_pred ceee
Q 014237 230 DGIV 233 (428)
Q Consensus 230 cGil 233 (428)
.+-.
T Consensus 287 ~~d~ 290 (381)
T TIGR01696 287 RRDV 290 (381)
T ss_pred CCCH
Confidence 7733
No 431
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=31.94 E-value=5.5e+02 Score=25.96 Aligned_cols=117 Identities=19% Similarity=0.142 Sum_probs=67.8
Q ss_pred cCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 014237 144 IGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (428)
Q Consensus 144 I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~ 223 (428)
|.-|.-.-+ +-. .|.+.+..+.++||+.|+...= +..++......| -...|+.||+. .++.|- |+..|
T Consensus 86 i~Hltcr~~-n~~-~l~~~L~~~~~~GI~niLaLrG--D~p~~~~~~~~~-----a~dLv~li~~~-~~~~i~--va~yP 153 (296)
T PRK09432 86 APHLTCIDA-TPD-ELRTIAKDYWNNGIRHIVALRG--DLPPGSGKPEMY-----ASDLVTLLKSV-ADFDIS--VAAYP 153 (296)
T ss_pred eeecccCCC-CHH-HHHHHHHHHHHCCCCEEEEeCC--CCCCCCCCCCcC-----HHHHHHHHHHh-CCCccc--eeeCC
Confidence 344444433 443 5888889999999999998764 223432222111 23566677764 444331 33333
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHHHHCCC
Q 014237 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAALDAEGF 285 (428)
Q Consensus 224 YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDG-RV~aIR~aLD~~Gf 285 (428)
.||...- +-+..++.|.+ -.+||||.+---=-.|. .+....+.+.+.|.
T Consensus 154 ---eghp~~~------~~~~dl~~Lk~----K~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi 203 (296)
T PRK09432 154 ---EVHPEAK------SAQADLINLKR----KVDAGANRAITQFFFDVESYLRFRDRCVSAGI 203 (296)
T ss_pred ---CCCCCCC------CHHHHHHHHHH----HHHcCCCeeecccccchHHHHHHHHHHHHcCC
Confidence 5664422 12344444433 35799998777777774 45678888888885
No 432
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=31.88 E-value=25 Score=36.67 Aligned_cols=56 Identities=25% Similarity=0.496 Sum_probs=35.7
Q ss_pred chHHH--HHHHHHHCCCCCce--------eechhhhhccccccchhhhhc---CCCCCCCccccCC---CCCC
Q 014237 271 GRVGA--IRAALDAEGFQHVS--------IMSYTAKYASSFYGPFREALD---SNPRFGDKKTYQM---NPAN 327 (428)
Q Consensus 271 GRV~a--IR~aLD~~Gf~~v~--------IMSYsaKyASafYGPFRdAa~---Sap~fgDRktYQm---dpaN 327 (428)
||||. +|.+|+..+++=|. .|+|--||-|.+ |+|..-+. ..-.|++++-... ||.+
T Consensus 11 GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~h-G~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~ 82 (343)
T PRK07729 11 GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVH-GKFDGTVEAFEDHLLVDGKKIRLLNNRDPKE 82 (343)
T ss_pred ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCC-CCCCCcEEecCCEEEECCEEEEEEEcCChhh
Confidence 77774 46666544443333 589999999975 99985553 2334666665555 5643
No 433
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=31.87 E-value=4.6e+02 Score=27.15 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeech
Q 014237 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY 293 (428)
Q Consensus 241 ND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSY 293 (428)
+|..++.|.+.........-+++-+..+-++-+..|++.|++.|++-+.++..
T Consensus 137 ~~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d 189 (396)
T cd01979 137 EDTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPP 189 (396)
T ss_pred HHHHHHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCC
Confidence 67788888764321111223344444466677999999999999966655553
No 434
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=31.70 E-value=27 Score=36.96 Aligned_cols=73 Identities=26% Similarity=0.331 Sum_probs=42.0
Q ss_pred CCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec-ccCCCCCCcceeecCCCccccHHHHHHH--HHHHHHHHHcCCC
Q 014237 185 KSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA-LDPYSSDGHDGIVREDGVIMNDETVHQL--CKQAVSQARAGAD 261 (428)
Q Consensus 185 KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVc-Lc~YTshGHcGil~~~g~IdND~Tl~~L--ak~Als~A~AGAD 261 (428)
-|.+|.....+-=-.-+|+..||++|||+.|=.-.+ =|-.--||. +.=|| .||.-| -+||--.++|||+
T Consensus 210 FDttgaaGd~Df~atL~AvE~Lr~~fP~m~IE~GMAgE~vLGMHG~---leYdg-----~~LAGL~PHqQa~l~~kAGan 281 (466)
T PF09505_consen 210 FDTTGAAGDGDFYATLKAVEALRKKFPNMYIEMGMAGEFVLGMHGE---LEYDG-----VTLAGLWPHQQAPLAEKAGAN 281 (466)
T ss_pred ccccccCCChhHHHHHHHHHHHHHhCcceeEecccccceeeecccc---eeECC-----EeeeccCcccccchHHhcCcc
Confidence 345554443222223489999999999999855444 122222321 21122 222222 2577778899999
Q ss_pred eecC
Q 014237 262 VVSP 265 (428)
Q Consensus 262 iVAP 265 (428)
+..|
T Consensus 282 vFGP 285 (466)
T PF09505_consen 282 VFGP 285 (466)
T ss_pred eecc
Confidence 9988
No 435
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=31.66 E-value=4.2e+02 Score=24.46 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014237 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~ 238 (428)
..+.++.+.+.++.++++++. ... .....++.+++..| +|..|-. +.++.++.-+.
T Consensus 44 ~~~~i~~l~~~~vDgiIi~~~-~~~--------------~~~~~l~~~~~~ip--vV~~~~~---~~~~~~~~~V~---- 99 (271)
T cd06314 44 QLRMLEDLIAEGVDGIAISPI-DPK--------------AVIPALNKAAAGIK--LITTDSD---APDSGRYVYIG---- 99 (271)
T ss_pred HHHHHHHHHhcCCCEEEEecC-Chh--------------HhHHHHHHHhcCCC--EEEecCC---CCccceeEEEc----
Confidence 567788889999999999874 210 01244555544444 4444533 22344444442
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeec---CCC--CCCchHHHHHHHHHHCCC
Q 014237 239 IMNDETVHQLCKQAVSQARAGADVVS---PSD--MMDGRVGAIRAALDAEGF 285 (428)
Q Consensus 239 IdND~Tl~~Lak~Als~A~AGADiVA---PSD--MMDGRV~aIR~aLD~~Gf 285 (428)
.||...-..+++..+..-..|.+++. +.. -..-|...+|++|.+.|.
T Consensus 100 ~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~ 151 (271)
T cd06314 100 TDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKDAIKDSKI 151 (271)
T ss_pred cChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHHHHhcCCc
Confidence 36666666555555443334666643 222 123588899999988875
No 436
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=31.40 E-value=2.6e+02 Score=24.86 Aligned_cols=62 Identities=23% Similarity=0.196 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 014237 327 NYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 391 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD 391 (428)
+..+++.... .+..|++++- |.+.-+|++..++....+|+....-.++......+.+.|+.|
T Consensus 42 ~~~~~~~~~~---~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~~~~~~~~~~~~~~~ga~~ 106 (240)
T PRK10710 42 HGDEVLPYVR---QTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADD 106 (240)
T ss_pred CHHHHHHHHh---hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEEcCCCHHHHHHHHhcCCCe
Confidence 4556665443 3558999986 555678999999976679999887666777777777888654
No 437
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=31.39 E-value=2.8e+02 Score=26.90 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
++.+.++.+.+.|+..|-|----|.. + .+....+....+.+.++.+|+.+ ++-|+.-+-. +
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~-~--~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~------------- 172 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNV-G--GGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSP--Y------------- 172 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCC-C--CCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCC--C-------------
Confidence 57888888888999999883223432 1 12223333456677888998876 5545554442 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM 269 (428)
++ .+.+.+.|-...++|||.|.-+...
T Consensus 173 -~~----~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 173 -FD----LEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred -CC----HHHHHHHHHHHHHcCCCEEEEEccc
Confidence 12 2223444445578999999866543
No 438
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=31.25 E-value=45 Score=23.37 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcccEeehhcH
Q 014237 397 MESLMCLRRAGADIILTYFA 416 (428)
Q Consensus 397 lEsL~~~kRAGAd~IiTYfA 416 (428)
-+++..+.++|+|.|+|-+.
T Consensus 10 ~~~~~~~l~~GVDgI~Td~p 29 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTDYP 29 (30)
T ss_dssp HHHHHHHHHHT-SEEEES-H
T ss_pred HHHHHHHHHcCCCEeeCCCC
Confidence 35667888999999999653
No 439
>PRK14017 galactonate dehydratase; Provisional
Probab=31.23 E-value=5.8e+02 Score=26.20 Aligned_cols=128 Identities=12% Similarity=0.124 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCC-CCC--HHHHHHHHHHHC-CCeEEEeeecccCCCCCC-----
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYND-NGL--VPRTIWLLKDRY-PDLVIYTDVALDPYSSDG----- 228 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~-~g~--v~rAIr~iK~~~-Pdl~VitDVcLc~YTshG----- 228 (428)
+++++++++++.|.+.+-+= +. .|+. . .+. .++ -.+-|+++++.+ ||+.++.|.+ ..||-+.
T Consensus 127 ~~~~~a~~~~~~Gf~~~KiK--v~--~~~~--~--~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN-~~w~~~~A~~~~ 197 (382)
T PRK14017 127 DVAEAARARVERGFTAVKMN--GT--EELQ--Y--IDSPRKVDAAVARVAAVREAVGPEIGIGVDFH-GRVHKPMAKVLA 197 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEc--Cc--CCcc--c--cccHHHHHHHHHHHHHHHHHhCCCCeEEEECC-CCCCHHHHHHHH
Confidence 58899999999999999882 11 1111 0 000 011 145688888998 6899999997 6676431
Q ss_pred ------cceeecCCCccccHHHHHHHHHH----------------HHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCCC
Q 014237 229 ------HDGIVREDGVIMNDETVHQLCKQ----------------AVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEGF 285 (428)
Q Consensus 229 ------HcGil~~~g~IdND~Tl~~Lak~----------------Als~A~-AGADiVAPSDMMDGRV~aIR~aLD~~Gf 285 (428)
..-.+.+-=..+|-+.+..|.++ .....+ .++|+|-|-=+.-|=|...++..+-+--
T Consensus 198 ~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~ 277 (382)
T PRK14017 198 KELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEA 277 (382)
T ss_pred HhhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHH
Confidence 11122211112344455555541 122223 3599999998888877777776665544
Q ss_pred CCceeechh
Q 014237 286 QHVSIMSYT 294 (428)
Q Consensus 286 ~~v~IMSYs 294 (428)
.++.+|.++
T Consensus 278 ~gi~~~~h~ 286 (382)
T PRK14017 278 YDVALAPHC 286 (382)
T ss_pred cCCeEeecC
Confidence 566676654
No 440
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=31.21 E-value=74 Score=31.54 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=31.9
Q ss_pred CCCC--ChHHHHHHHHhchhcCCceEEecCCC---chHHHHHHHHhhCCCCeEEE
Q 014237 323 MNPA--NYREALVEAQADESEGADILLVKPGL---PYLDVIRLLRDKYPLPIAAY 372 (428)
Q Consensus 323 mdpa--N~~EAlrE~~lDi~EGADilMVKPal---~YLDII~~vk~~~~lPvaaY 372 (428)
+||. +.++++..+ .+.|+|.+||==.. .+=.++..+|+.+++|+.-.
T Consensus 14 iDPdK~~~~~~~~~~---~~~gtDai~VGGS~~~~~~d~vv~~ik~~~~lPvilf 65 (230)
T PF01884_consen 14 IDPDKPNPEEALEAA---CESGTDAIIVGGSDTGVTLDNVVALIKRVTDLPVILF 65 (230)
T ss_dssp E-TTSS-HHHHHHHH---HCTT-SEEEEE-STHCHHHHHHHHHHHHHSSS-EEEE
T ss_pred ECCCCCCcHHHHHHH---HhcCCCEEEECCCCCccchHHHHHHHHhcCCCCEEEe
Confidence 5665 566766555 89999999997665 44567788888899998755
No 441
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.10 E-value=89 Score=31.49 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCC-CCCcc
Q 014237 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKK 319 (428)
Q Consensus 241 ND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~-fgDRk 319 (428)
.-.-+..+.+-|+.-.=+.-|-..-|||.- -..+| + .|||-+.+++..... +.+-+
T Consensus 127 t~Pg~r~~~k~Av~~GGg~~HR~gL~d~vl----------ikdnH--i-----------~~~g~i~~~v~~~k~~~p~~~ 183 (273)
T PRK05848 127 TRPLLRIFEKYSVRNGGASNHRLGLDDCLM----------LKDTH--L-----------KHIKDLKEFIQHARKNIPFTA 183 (273)
T ss_pred CCcchhHHHHHHHHhCCCccccCCchhhhC----------cCHHH--H-----------HHHCcHHHHHHHHHHhCCCCc
Confidence 445677788888876655556677776642 11111 1 144666666655433 22223
Q ss_pred ccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhh-CCCCeEEEEechHHHHHHHHHHCCCCchhhHHHH
Q 014237 320 TYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMME 398 (428)
Q Consensus 320 tYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~-~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlE 398 (428)
--..+..|.+||+..+ +-|||+||.- .+.+=++-+.++.. ...|=..-.+| |-|++ |
T Consensus 184 ~I~VEv~tleea~~A~----~~GaDiI~LD-n~~~e~l~~~v~~~~~~~~~~~ieAs------------GgIt~-----~ 241 (273)
T PRK05848 184 KIEIECESLEEAKNAM----NAGADIVMCD-NMSVEEIKEVVAYRNANYPHVLLEAS------------GNITL-----E 241 (273)
T ss_pred eEEEEeCCHHHHHHHH----HcCCCEEEEC-CCCHHHHHHHHHHhhccCCCeEEEEE------------CCCCH-----H
Confidence 4667888999987765 5899999973 34555555555531 22343334444 44554 4
Q ss_pred HHHHHHHhcccEeehhcHH
Q 014237 399 SLMCLRRAGADIILTYFAL 417 (428)
Q Consensus 399 sL~~~kRAGAd~IiTYfA~ 417 (428)
.+..+...|+|+|.+-..-
T Consensus 242 ni~~ya~~GvD~IsvG~l~ 260 (273)
T PRK05848 242 NINAYAKSGVDAISSGSLI 260 (273)
T ss_pred HHHHHHHcCCCEEEeChhh
Confidence 5567888999999875543
No 442
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=31.08 E-value=3.8e+02 Score=23.81 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=51.1
Q ss_pred ChHHHHHHHHhchhcCCceEEec---CCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCCCch------hh
Q 014237 327 NYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMIDE------QR 394 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMIkaAa~~G~iD~------~~ 394 (428)
+..+++.... .+..|+|++- |.+.-+++++.+++. ..+|+....-..+......+.+.|..|. ..
T Consensus 34 ~~~~~~~~~~---~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~ 110 (229)
T PRK10161 34 DYDSAVNQLN---EPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPK 110 (229)
T ss_pred CHHHHHHHHh---ccCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHH
Confidence 4566666543 3457999885 455678899999875 3689998876677777777888887542 24
Q ss_pred HHHHHHHHHHH
Q 014237 395 VMMESLMCLRR 405 (428)
Q Consensus 395 ~vlEsL~~~kR 405 (428)
.+.+.+..+.|
T Consensus 111 ~L~~~i~~~~~ 121 (229)
T PRK10161 111 ELVARIKAVMR 121 (229)
T ss_pred HHHHHHHHHHh
Confidence 45555555433
No 443
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=31.04 E-value=1.5e+02 Score=31.55 Aligned_cols=62 Identities=27% Similarity=0.326 Sum_probs=43.6
Q ss_pred HHHHHHHhchhcCCceEEecCCCc----hHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHH
Q 014237 330 EALVEAQADESEGADILLVKPGLP----YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLR 404 (428)
Q Consensus 330 EAlrE~~lDi~EGADilMVKPal~----YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~k 404 (428)
+.+.++..=++-|+|+|.|=-+.. -+|.|+.+|++| ++||.+=+| .+ .|....+.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v---------------~t-----~~~a~~l~ 283 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV---------------AT-----AEQAKALI 283 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC---------------CC-----HHHHHHHH
Confidence 444555544667999999977433 588999999997 699998333 22 23344566
Q ss_pred HhcccEe
Q 014237 405 RAGADII 411 (428)
Q Consensus 405 RAGAd~I 411 (428)
.||||.|
T Consensus 284 ~aGad~i 290 (450)
T TIGR01302 284 DAGADGL 290 (450)
T ss_pred HhCCCEE
Confidence 7899999
No 444
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=31.04 E-value=1.7e+02 Score=29.44 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCCHH---HHHHHHHHHCCCeEEEeeecccC
Q 014237 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLVP---RTIWLLKDRYPDLVIYTDVALDP 223 (428)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~-~KD~~Gs~A~~~~g~v~---rAIr~iK~~~Pdl~VitDVcLc~ 223 (428)
|++.-|.. -..+-++.+++.|++.|.+|.-+++. .+...+ .+.+..+. ++++..|+.. +-..+++
T Consensus 67 ~~v~~~~r--~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~---~t~~e~l~~~~~~v~~a~~~g----~~v~~~~-- 135 (279)
T cd07947 67 PEVTGWIR--ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLK---MTREEAMEKYLEIVEEALDHG----IKPRCHL-- 135 (279)
T ss_pred CEEEEEec--CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC---cCHHHHHHHHHHHHHHHHHCC----CeEEEEE--
Confidence 66666632 35788899999999999998754431 122222 22233333 3444444432 2233333
Q ss_pred CCCCCcceeecCCCcccc---HHHHHHHHHHHHHHHHcCCC-eecCCCCCC
Q 014237 224 YSSDGHDGIVREDGVIMN---DETVHQLCKQAVSQARAGAD-VVSPSDMMD 270 (428)
Q Consensus 224 YTshGHcGil~~~g~IdN---D~Tl~~Lak~Als~A~AGAD-iVAPSDMMD 270 (428)
+ |.+.. |..++.+.+.+-.-.++||| .|.=.|+.=
T Consensus 136 -----------e-d~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG 174 (279)
T cd07947 136 -----------E-DITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLG 174 (279)
T ss_pred -----------E-cccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 1 22222 33334444444444579999 688777764
No 445
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=30.76 E-value=1e+02 Score=26.63 Aligned_cols=58 Identities=19% Similarity=0.428 Sum_probs=44.2
Q ss_pred hcCCceEEecCCCchHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhccc
Q 014237 340 SEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 409 (428)
Q Consensus 340 ~EGADilMVKPal~YLDII~~vk~~~~-lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd 409 (428)
.+.+|++++=|-..| -+.++++... .||..=.- ..=|++|.++++-..+..++.||+.
T Consensus 48 ~~~~DviLl~Pqi~~--~~~~i~~~~~~~pV~~I~~----------~~Yg~~dg~~vl~~a~~~~~~~~~~ 106 (106)
T PRK10499 48 GQNADVVLLGPQIAY--MLPEIQRLLPNKPVEVIDS----------LLYGKVDGLGVLKAAVAAIKKAAAN 106 (106)
T ss_pred ccCCCEEEECHHHHH--HHHHHHhhcCCCCEEEECh----------HhhhcCCHHHHHHHHHHHHHHhccC
Confidence 346799999999888 5667776653 68776332 3347789999999999999999874
No 446
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=30.64 E-value=1.5e+02 Score=31.45 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC---------------------HHHHHHHHHHHCCCeEEE
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL---------------------VPRTIWLLKDRYPDLVIY 216 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~---------------------v~rAIr~iK~~~Pdl~Vi 216 (428)
.|.+.+.-+.++|+.+|-|=|+... .+...+..|++... ..+.|.+++++ .|-||
T Consensus 23 ~I~~kldyl~~LGvtaIwl~P~~~~--~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~--Gi~vi 98 (479)
T PRK09441 23 RLAERAPELAEAGITAVWLPPAYKG--TSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHEN--GIKVY 98 (479)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCccC--CCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHC--CCEEE
Confidence 5899999999999999999775321 22223445544433 44556666655 79999
Q ss_pred eeecccC
Q 014237 217 TDVALDP 223 (428)
Q Consensus 217 tDVcLc~ 223 (428)
.|+.+-.
T Consensus 99 ~D~V~NH 105 (479)
T PRK09441 99 ADVVLNH 105 (479)
T ss_pred EEECccc
Confidence 9998654
No 447
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=30.62 E-value=2e+02 Score=28.80 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=24.3
Q ss_pred CCCCcee-echhhhHHHHHHHHHHcCCCeEEEee
Q 014237 146 AMPGCYR-LGWRHGLVQEVAKARDVGVNSVVLFP 178 (428)
Q Consensus 146 SMPGv~r-~s~~~~l~~~v~~~~~~GI~sv~LFg 178 (428)
.-+|.++ ++.+ +++++++++.+.|++.|++-|
T Consensus 33 ~~~~~~~~ls~e-ei~~~~~~~~~~G~~ei~l~g 65 (336)
T PRK06245 33 RDPGQPSLLSPE-EVKEILRRGADAGCTEALFTF 65 (336)
T ss_pred CCCCccCcCCHH-HHHHHHHHHHHCCCCEEEEec
Confidence 3344333 5775 699999999999999988864
No 448
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=30.62 E-value=2.8e+02 Score=27.01 Aligned_cols=109 Identities=11% Similarity=0.165 Sum_probs=61.7
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 014237 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (428)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YTshGHc 230 (428)
++-.+ .+.+.++.+++.|++.+++.|..- +...=..-=-.+.++...+... ++.||+=|+
T Consensus 17 ~iD~~-~~~~~i~~l~~~Gv~gl~v~GstG--------E~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------- 77 (284)
T cd00950 17 SVDFD-ALERLIEFQIENGTDGLVVCGTTG--------ESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG---------- 77 (284)
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEECCCCc--------chhhCCHHHHHHHHHHHHHHhCCCCcEEeccC----------
Confidence 34454 589999999999999999998632 2111111112344555555443 344442111
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee--cCCCCC----CchHHHHHHHHHHCCCCCceeech
Q 014237 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV--SPSDMM----DGRVGAIRAALDAEGFQHVSIMSY 293 (428)
Q Consensus 231 Gil~~~g~IdND~Tl~~Lak~Als~A~AGADiV--APSDMM----DGRV~aIR~aLD~~Gf~~v~IMSY 293 (428)
..|.+...++|-...++|||.| .|-.+- |+-+...|+..+. .+.+|+=|
T Consensus 78 -----------~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~---~~~pi~lY 132 (284)
T cd00950 78 -----------SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA---TDLPVILY 132 (284)
T ss_pred -----------CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc---CCCCEEEE
Confidence 1133344556666688899933 333222 4566666666664 36788866
No 449
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=30.50 E-value=54 Score=37.58 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCCCceeec
Q 014237 246 HQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (428)
Q Consensus 246 ~~Lak~Als~A~AGADiV--APSDMMD-GRV~aIR~aLD~~Gf~~v~IMS 292 (428)
+.-.+|....++||||+| +=-+|=| --+..||+.|.+.|+ ++++++
T Consensus 110 eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~-~iPLVA 158 (733)
T PLN02925 110 EATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY-NIPLVA 158 (733)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC-CCCEEE
Confidence 334567788999999998 2223333 457889999999997 699986
No 450
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.41 E-value=4.9e+02 Score=24.91 Aligned_cols=106 Identities=15% Similarity=0.059 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHH-HCCCeEEEeeecccC--CCCCCcceeecC
Q 014237 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKD-RYPDLVIYTDVALDP--YSSDGHDGIVRE 235 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~-~~Pdl~VitDVcLc~--YTshGHcGil~~ 235 (428)
..+.++.+.+.++..+++++. .. ..+..+++.+++ ..| +|+.|...++ ...-+.+..+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~-~~--------------~~~~~~~~~~~~~giP--vV~~~~~~~~~~~~~~~~~~~V-- 106 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLV-DP--------------TAAQTVINKAKQKNIP--VIFFNREPEEEDIKSYDKAYYV-- 106 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecC-ch--------------hhHHHHHHHHHHCCCC--EEEeCCCCccccccccccccee--
Confidence 456788899999999999873 21 124557777765 345 5555544321 1111122223
Q ss_pred CCccccHHHHHHHHHHHHHHHHc-------CCC----e--e-cCCCCC--CchHHHHHHHHHHCCC
Q 014237 236 DGVIMNDETVHQLCKQAVSQARA-------GAD----V--V-SPSDMM--DGRVGAIRAALDAEGF 285 (428)
Q Consensus 236 ~g~IdND~Tl~~Lak~Als~A~A-------GAD----i--V-APSDMM--DGRV~aIR~aLD~~Gf 285 (428)
..||...-+.+++....+... |.+ + + .+.+.. .-|....|++|.++|.
T Consensus 107 --~~d~~~~g~~~a~~l~~~~~~~~~~~~~~~~g~~~i~~~~g~~~~~~~~~R~~gf~~~l~~~~~ 170 (303)
T cd01539 107 --GTDAEQSGILQGKLIADYWNANKDALDKNGDGIIQYVMLKGEPGHPDAIARTKYSIETLNDAGI 170 (303)
T ss_pred --eecHHHHHHHHHHHHHHHhhccccccccCCCCceEEEEEEcCCCCchhhhhhhhHHHHHHhcCC
Confidence 246777777777777665422 111 1 2 233333 3478888889988875
No 451
>PRK07360 FO synthase subunit 2; Reviewed
Probab=30.40 E-value=1.9e+02 Score=29.77 Aligned_cols=95 Identities=23% Similarity=0.389 Sum_probs=60.1
Q ss_pred ccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEE-e---cCCCc----hHHHHHHHHhhCC-CCeE
Q 014237 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILL-V---KPGLP----YLDVIRLLRDKYP-LPIA 370 (428)
Q Consensus 300 afYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilM-V---KPal~----YLDII~~vk~~~~-lPva 370 (428)
|.|-.|+.- + ++.+.|.|++ +|.+..+..=.+.|+.-+. | .|... |+|+|+.+|+.++ +-+.
T Consensus 74 C~fC~~~~~----~--~~~~~y~ls~---eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~ 144 (371)
T PRK07360 74 CGFCAFRRD----E--GDHGAFWLTI---AEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLH 144 (371)
T ss_pred CccCCcccC----C--CCCCCeeCCH---HHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCccee
Confidence 566656531 1 3567788865 5555555544566876544 3 56565 8999999999873 5555
Q ss_pred EEEech-HHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 371 AYQVSG-EYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 371 aYqVSG-EYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
++ |. |+..+ +-..|..+ -|.+..+|.||.|.+.
T Consensus 145 a~--s~~ei~~~--~~~~G~~~-----~e~l~~LkeAGld~~~ 178 (371)
T PRK07360 145 AF--SPMEVYFA--AREDGLSY-----EEVLKALKDAGLDSMP 178 (371)
T ss_pred eC--CHHHHHHH--HhhcCCCH-----HHHHHHHHHcCCCcCC
Confidence 55 44 44442 23455433 5788899999999985
No 452
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=30.35 E-value=1.6e+02 Score=30.22 Aligned_cols=111 Identities=26% Similarity=0.221 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014237 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (428)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~I 239 (428)
.+.++.+.+.|+..|-+|-... + ...+.+.|+.+|+.--++.+ -++ .+|.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~-----e--------~~~~~~~i~~ak~~G~~v~~--~l~----~a~~----------- 140 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCT-----E--------ADVSEQHIGLARELGMDTVG--FLM----MSHM----------- 140 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecc-----h--------HHHHHHHHHHHHHCCCeEEE--EEE----eccC-----------
Confidence 4668999999999988764211 1 12468899999987543222 122 1221
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH---CCC--CCceeechhhhhcccccc
Q 014237 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA---EGF--QHVSIMSYTAKYASSFYG 303 (428)
Q Consensus 240 dND~Tl~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~---~Gf--~~v~IMSYsaKyASafYG 303 (428)
.|.+.|++++-...++|||.|.-.|+.= -+|.++|+.|+. -|| +|..=|++|--.+.--.|
T Consensus 141 ---~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG 214 (337)
T PRK08195 141 ---APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG 214 (337)
T ss_pred ---CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC
Confidence 1446666677777789999999888753 568889988831 244 555557776544443333
No 453
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=30.19 E-value=2.1e+02 Score=27.09 Aligned_cols=78 Identities=6% Similarity=-0.104 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHhchhcCCceEE---ec---CCCchHHHHHHHHhhC-CCCeEEEEechHHH-HHHH---HHHCCCCchh
Q 014237 325 PANYREALVEAQADESEGADILL---VK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYS-MIKA---GGALKMIDEQ 393 (428)
Q Consensus 325 paN~~EAlrE~~lDi~EGADilM---VK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYa-MIka---Aa~~G~iD~~ 393 (428)
..|..|++..... .-.|+++ .- |++.=||+++++++.+ ++|+..+-...+=. .+++ +...|++...
T Consensus 23 ~~~~~~~l~~~~~---~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~ 99 (207)
T PRK11475 23 FSSQSSFQDAMSR---ISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKA 99 (207)
T ss_pred eCCHHHHHHHhcc---CCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecC
Confidence 4466777765432 2358876 44 6777789999999887 59999885433222 3332 3346666543
Q ss_pred hHHHHHHHHHHH
Q 014237 394 RVMMESLMCLRR 405 (428)
Q Consensus 394 ~~vlEsL~~~kR 405 (428)
.-.-|.+.++++
T Consensus 100 ~~~~eL~~aI~~ 111 (207)
T PRK11475 100 STLEILQQELFL 111 (207)
T ss_pred CCHHHHHHHHHH
Confidence 333444444444
No 454
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=30.18 E-value=1.5e+02 Score=30.86 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=32.1
Q ss_pred chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 353 PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 353 ~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
.+.+|++.+|+..++||.+= .| -|... +.|....+..+|||.|+
T Consensus 155 ~~~~i~~~v~~~~~~Pv~vK-l~--------------p~~~~-~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 155 LVEMYTRWVKRGSRLPVIVK-LT--------------PNITD-IREPARAAKRGGADAVS 198 (420)
T ss_pred HHHHHHHHHHhccCCcEEEE-cC--------------CCccc-HHHHHHHHHHCCCCEEE
Confidence 46899999999999998752 22 12222 56677778899999987
No 455
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=30.17 E-value=3.6e+02 Score=28.07 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCC-CCCC------------cccCcCcCCCCCHH---HHHHHHHHHCC--CeEEEeeec
Q 014237 159 LVQEVAKARDVGVNSVVLFPKVPD-ALKS------------PTGDEAYNDNGLVP---RTIWLLKDRYP--DLVIYTDVA 220 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~-~~KD------------~~Gs~A~~~~g~v~---rAIr~iK~~~P--dl~VitDVc 220 (428)
+.+.++.+.+.|+..|.+|-.+.. ..-| ..+...|.-..+-+ +.|+.++++.+ ++-||.
T Consensus 182 ~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig--- 258 (420)
T PRK08318 182 IREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISG--- 258 (420)
T ss_pred HHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEe---
Confidence 566777788999999998776543 1111 12344455444433 55555655542 444443
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec--CCCCCCch------HHHHHHHHHHCCCCCc
Q 014237 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS--PSDMMDGR------VGAIRAALDAEGFQHV 288 (428)
Q Consensus 221 Lc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVA--PSDMMDGR------V~aIR~aLD~~Gf~~v 288 (428)
.|-|.+ ++.|+.+-+||||.|- -.-|.+|- +.-+++.|++.||.++
T Consensus 259 ---------------~GGI~s-------~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~si 312 (420)
T PRK08318 259 ---------------IGGIET-------WRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFASL 312 (420)
T ss_pred ---------------ecCcCC-------HHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCcchH
Confidence 344444 3455666679999774 33333332 3445566778888554
No 456
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=30.12 E-value=1.3e+02 Score=32.64 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=56.0
Q ss_pred ChHHHHHHHHhchhcCCceEEecCCCchHHHHHH-HHhhCCCCeEEEEechHHHHHHHHHHCCC--Cch-hhHHHHHHHH
Q 014237 327 NYREALVEAQADESEGADILLVKPGLPYLDVIRL-LRDKYPLPIAAYQVSGEYSMIKAGGALKM--IDE-QRVMMESLMC 402 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMVKPal~YLDII~~-vk~~~~lPvaaYqVSGEYaMIkaAa~~G~--iD~-~~~vlEsL~~ 402 (428)
|.++=++.+..=++-|||-||==--.-=||=||+ +-+++++||+.--+ |... .+++. .|. .+.++|.+.-
T Consensus 74 d~~~E~~K~~~A~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPi---Yqa~---~~~~~~~~~~t~d~~~~~ie~ 147 (420)
T PF01964_consen 74 DIEEELEKLKIAEKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPI---YQAA---IRKGGSIVDMTEDDFFDVIEK 147 (420)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HH---HHHH---HHTTT-GGG--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchH---HHHH---HHhCCChhhCCHHHHHHHHHH
Confidence 6677788888889999999998777777888875 56788999987322 2222 23322 222 2578899888
Q ss_pred HHHhcccEeehhc--HHHHHHHHhccC
Q 014237 403 LRRAGADIILTYF--ALQAARCLCGEK 427 (428)
Q Consensus 403 ~kRAGAd~IiTYf--A~e~a~wL~~~~ 427 (428)
=-+.|.|++--+. ..+.+++|++++
T Consensus 148 qa~~GVDfmtiH~git~~~~~~~~~~~ 174 (420)
T PF01964_consen 148 QAKDGVDFMTIHCGITRETLERLKKSG 174 (420)
T ss_dssp HHHHT--EEEE-TT--GGGGGGGT--T
T ss_pred HHHcCCCEEEEccchhHHHHHHHhhhc
Confidence 8899999976554 345555555443
No 457
>PHA03386 P10 fibrous body protein; Provisional
Probab=29.89 E-value=54 Score=28.74 Aligned_cols=36 Identities=33% Similarity=0.637 Sum_probs=19.7
Q ss_pred hhhccC-CCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCC
Q 014237 72 AVVAGN-IPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNR 110 (428)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~p~g~p~~~~~~~~~R~RRlR 110 (428)
.+..|. .|+ +|.|+.|..|.- .++.-+-..|.||.|
T Consensus 57 ~iLn~d~iPd-~P~p~~p~~~~~--~~~~~~~~~~~rrs~ 93 (94)
T PHA03386 57 SILTGDEVPD-PPDPPLPLLPEP--EFELDSDIPRGRRSR 93 (94)
T ss_pred HhcCcccCCC-CCCCCCCCCccc--cccccccchhccccc
Confidence 456666 666 577777766653 332223334556555
No 458
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=29.74 E-value=1.1e+02 Score=30.08 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 355 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 355 LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+.+++...+..++|+...+.+|+| ++-+-+.+..+++.|++.|++
T Consensus 47 ~~~~~~qA~algiPl~~~~~~~~~--------------e~~~~~l~~~l~~~gv~~vv~ 91 (222)
T TIGR00289 47 LHLTDLVAEAVGIPLIKLYTSGEE--------------EKEVEDLAGQLGELDVEALCI 91 (222)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCch--------------hHHHHHHHHHHHHcCCCEEEE
Confidence 578888889999999999999976 223333334457779998876
No 459
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=29.65 E-value=1.9e+02 Score=27.72 Aligned_cols=63 Identities=29% Similarity=0.241 Sum_probs=43.7
Q ss_pred CChHHHHHHHHhchhcCCceEEecCCC-chHHHHHHHHhhCC--CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHH
Q 014237 326 ANYREALVEAQADESEGADILLVKPGL-PYLDVIRLLRDKYP--LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 402 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMVKPal-~YLDII~~vk~~~~--lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~ 402 (428)
.+..|+.+. .+.|||+|.+=|+- .=++-|+.++..++ +|+.+ -|-|+. |.+..
T Consensus 112 ~t~~E~~~A----~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvva---------------iGGI~~-----~n~~~ 167 (206)
T PRK09140 112 ATPTEAFAA----LRAGAQALKLFPASQLGPAGIKALRAVLPPDVPVFA---------------VGGVTP-----ENLAP 167 (206)
T ss_pred CCHHHHHHH----HHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEEE---------------ECCCCH-----HHHHH
Confidence 455564443 35899999984422 12788999999883 99866 455665 55667
Q ss_pred HHHhcccEee
Q 014237 403 LRRAGADIIL 412 (428)
Q Consensus 403 ~kRAGAd~Ii 412 (428)
+..+|||.|-
T Consensus 168 ~~~aGa~~va 177 (206)
T PRK09140 168 YLAAGAAGFG 177 (206)
T ss_pred HHHCCCeEEE
Confidence 8889999875
No 460
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=29.64 E-value=1.8e+02 Score=31.61 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCC---------C---HHHHHHHHHHHCCCeEEEeeecccCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG---------L---VPRTIWLLKDRYPDLVIYTDVALDPY 224 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g---------~---v~rAIr~iK~~~Pdl~VitDVcLc~Y 224 (428)
++.+.++.+.++||++|.|=|+.+.... ...|+... - +.+.|++++++ +|-||.|+.+-.-
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~----~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~--gi~vilD~v~NH~ 100 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK----DNGYDVSDYYAINPLFGTMADFEELVSEAKKR--NIKIMLDMVFNHT 100 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC----CCCCCccccCccCcccCCHHHHHHHHHHHHHC--CCEEEEEECcccc
Confidence 6888999999999999999886432111 12333222 2 34445555444 7999999988544
No 461
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=29.63 E-value=89 Score=29.65 Aligned_cols=49 Identities=24% Similarity=0.546 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHcCC--CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 014237 158 GLVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (428)
Q Consensus 158 ~l~~~v~~~~~~GI--~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~Y 224 (428)
++...++.+.+.|+ +.|++..+|-. +++|+.|.++||++-|+| .|+|+-
T Consensus 136 s~~~ai~~L~~~G~~~~~I~~v~~ias-----------------~~Gl~~l~~~~P~v~I~t-a~iD~~ 186 (207)
T PF14681_consen 136 SAIAAIEILKEHGVPEENIIIVSVIAS-----------------PEGLERLLKAFPDVRIYT-AAIDPE 186 (207)
T ss_dssp HHHHHHHHHHHTTG-GGEEEEEEEEEE-----------------HHHHHHHHHHSTTSEEEE-EEEESE
T ss_pred hHHHHHHHHHHcCCCcceEEEEEEEec-----------------HHHHHHHHHhCCCeEEEE-EEEccc
Confidence 58999999999998 68888776542 469999999999999887 455543
No 462
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=29.56 E-value=2.2e+02 Score=26.17 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=53.3
Q ss_pred cCCCCCChHHHHHHHHhchhcCCceEEe-------cCCCc-hHHHHHHHHhhCCCCe-EEEEechHHHHHHHHHHCCC--
Q 014237 321 YQMNPANYREALVEAQADESEGADILLV-------KPGLP-YLDVIRLLRDKYPLPI-AAYQVSGEYSMIKAGGALKM-- 389 (428)
Q Consensus 321 YQmdpaN~~EAlrE~~lDi~EGADilMV-------KPal~-YLDII~~vk~~~~lPv-aaYqVSGEYaMIkaAa~~G~-- 389 (428)
|-+|+.+..|.++++. +-|+|.|=+ -|..+ .++.++++++.++.|+ +-.-|.+...-+..+.+.|.
T Consensus 11 ~~~~~~~~~~~~~~~~---~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~ 87 (220)
T PRK05581 11 LSADFARLGEEVKAVE---AAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADI 87 (220)
T ss_pred hcCCHHHHHHHHHHHH---HcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCE
Confidence 4466666666666654 678988766 24444 4899999998765443 22334342222233334442
Q ss_pred ---Cch-hhHHHHHHHHHHHhcccEeehh
Q 014237 390 ---IDE-QRVMMESLMCLRRAGADIILTY 414 (428)
Q Consensus 390 ---iD~-~~~vlEsL~~~kRAGAd~IiTY 414 (428)
-++ .....+.+..++..|..++++-
T Consensus 88 v~vh~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (220)
T PRK05581 88 ITFHVEASEHIHRLLQLIKSAGIKAGLVL 116 (220)
T ss_pred EEEeeccchhHHHHHHHHHHcCCEEEEEE
Confidence 222 2345666778888888877654
No 463
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=29.52 E-value=3.9e+02 Score=25.52 Aligned_cols=89 Identities=22% Similarity=0.317 Sum_probs=50.7
Q ss_pred CChHHHHHHHHhchhcCCceEEecCCCc--------hHHHHHHHHhh-CCCCeEE-EE---------ec-hH-HHHHHHH
Q 014237 326 ANYREALVEAQADESEGADILLVKPGLP--------YLDVIRLLRDK-YPLPIAA-YQ---------VS-GE-YSMIKAG 384 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMVKPal~--------YLDII~~vk~~-~~lPvaa-Yq---------VS-GE-YaMIkaA 384 (428)
.+..|++.+++. ++.|||+|=..=.+. -.++++.++.. ..+|+.. +- .+ -+ +..++.+
T Consensus 9 ~~~~~~~~~~~~-~~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~ 87 (228)
T TIGR01093 9 PDLEEALATAEK-ICKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEELKRA 87 (228)
T ss_pred CCHHHHHHHHHH-hccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHHHHH
Confidence 456676665554 488999986532211 12345554432 3588544 33 22 12 3556666
Q ss_pred HHCC---CCchh-----hHHHHHHHHHHHhcccEeehhc
Q 014237 385 GALK---MIDEQ-----RVMMESLMCLRRAGADIILTYF 415 (428)
Q Consensus 385 a~~G---~iD~~-----~~vlEsL~~~kRAGAd~IiTYf 415 (428)
+..+ |+|-+ +.+.|.+...++.|..+|++|+
T Consensus 88 ~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H 126 (228)
T TIGR01093 88 ADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYH 126 (228)
T ss_pred HHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEecc
Confidence 4433 44543 3344445567889999999998
No 464
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=29.51 E-value=1e+02 Score=32.07 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=10.6
Q ss_pred HHHHHHcCCCeecCC
Q 014237 252 AVSQARAGADVVSPS 266 (428)
Q Consensus 252 Als~A~AGADiVAPS 266 (428)
++.-.+|||++|--|
T Consensus 259 ~lAA~~aGa~~vd~s 273 (347)
T PLN02746 259 ILVSLQMGISTVDSS 273 (347)
T ss_pred HHHHHHhCCCEEEEe
Confidence 556678999977443
No 465
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=29.50 E-value=1.9e+02 Score=30.39 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=28.1
Q ss_pred CChHHHHHHHHhchhcCCceEEe----------cCCCchHHHHHHHHhhCCCCeEE
Q 014237 326 ANYREALVEAQADESEGADILLV----------KPGLPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 326 aN~~EAlrE~~lDi~EGADilMV----------KPal~YLDII~~vk~~~~lPvaa 371 (428)
.|..|-.+.+ +++|||+|.+ ......+||.+. ++..++||.+
T Consensus 142 ~~~~e~a~~l---~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~-i~~~~IPVI~ 193 (369)
T TIGR01304 142 QNAREIAPIV---VKAGADLLVIQGTLVSAEHVSTSGEPLNLKEF-IGELDVPVIA 193 (369)
T ss_pred cCHHHHHHHH---HHCCCCEEEEeccchhhhccCCCCCHHHHHHH-HHHCCCCEEE
Confidence 3555544444 5899999996 444567775554 5567999975
No 466
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=29.50 E-value=6.6e+02 Score=26.05 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCC--CcccC-cCcCCCCCHHHHHHHH----HHHCCCeEEEe---eecccCCC--
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALK--SPTGD-EAYNDNGLVPRTIWLL----KDRYPDLVIYT---DVALDPYS-- 225 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~K--D~~Gs-~A~~~~g~v~rAIr~i----K~~~Pdl~Vit---DVcLc~YT-- 225 (428)
-+.+.++.++++|...|.|=. ++ ... .+.|+ .....++++ +.|+.| |+++|++.||. +--| ++.
T Consensus 148 il~~rl~~l~~kGfDGvfLD~-lD-sy~~~~~~~~~~~~~~~~m~-~~i~~Ia~~ar~~~P~~~II~NnG~eil-~~~~g 223 (315)
T TIGR01370 148 IAFSYLDRVIAQGFDGVYLDL-ID-AFEYWAENGDNRPGAAAEMI-AFVCEIAAYARAQNPQFVIIPQNGEELL-RDDHG 223 (315)
T ss_pred HHHHHHHHHHHcCCCeEeecc-ch-hhhhhcccCCcchhhHHHHH-HHHHHHHHHHHHHCCCEEEEecCchhhh-hcccc
Confidence 367778999999999987733 22 211 11111 011112222 355555 99999998872 2222 221
Q ss_pred -CCC-cceeecCC------CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHHCCC
Q 014237 226 -SDG-HDGIVRED------GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDAEGF 285 (428)
Q Consensus 226 -shG-HcGil~~~------g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~~Gf 285 (428)
-++ =+||..|+ +.+...+ .+.+.++.-..-++|-.|++-.=.=+ .++..+.+...++||
T Consensus 224 ~~~~~idgV~~Eslf~~~~~~~~e~d-r~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf 298 (315)
T TIGR01370 224 GLAATVSGWAVEELFYYAANRPTEAE-RQRRLLALYRLWQQGKFVLTVDYVDDGTKTNENPARMKDAAEKARAAGL 298 (315)
T ss_pred chhhhceEEEecceEEcCCCCCCHHH-HHHHHHHHHHHHHCCCcEEEEEecCCcccchhhHHHHHHHHHHHHHcCC
Confidence 111 24554332 3443333 44444555555566988876544443 367788888889998
No 467
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=29.45 E-value=2e+02 Score=31.55 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDP 223 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~------------v~rAIr~iK~~~Pdl~VitDVcLc~ 223 (428)
++.+.+..+.++||++|-|=|+.+. +.....|+.... +.+.|++++++ ++-||.|+-+-.
T Consensus 34 gi~~~ldyl~~lGv~~i~l~P~~~~----~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~--gi~vilD~V~NH 105 (551)
T PRK10933 34 GVTQRLDYLQKLGVDAIWLTPFYVS----PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSR--GIRIILDMVFNH 105 (551)
T ss_pred HHHHhhHHHHhCCCCEEEECCCCCC----CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHC--CCEEEEEECCCC
Confidence 6889999999999999999886321 111123333222 44555555554 799999998764
No 468
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=29.36 E-value=94 Score=30.23 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=39.0
Q ss_pred hcCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHH-hcccEeehh
Q 014237 340 SEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR-AGADIILTY 414 (428)
Q Consensus 340 ~EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kR-AGAd~IiTY 414 (428)
..|+|++.+--.+.--++++++++. +++|.+|-| |.. +.+..+.+ .|.| |||-
T Consensus 203 ~~~~~~v~~~~~~~~~~~v~~~~~~-G~~v~vWTV----------------n~~----~~~~~l~~~~GVd-iiTD 256 (258)
T cd08573 203 FLGVSALLIHKDDISSAYVRYWRAR-GIRVIAWTV----------------NTP----TEKQYFAKTLNVP-YITD 256 (258)
T ss_pred hcCeeEEEechHhcCHHHHHHHHHC-CCEEEEEec----------------CCH----HHHHHHHHHhCCC-eecC
Confidence 3589999887666666888888775 999999999 332 22335566 7999 8884
No 469
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=29.23 E-value=50 Score=32.99 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCeEEE---eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 014237 158 GLVQEVAKARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L---Fgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~ 234 (428)
.+.+.++++.++|...|=+ |-.+|. .--++.|+.+|+. .+.|++-|- .
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~--------------~~r~~~I~~~~~~--Gf~v~~EvG-------------~ 135 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPE--------------EERLRLIRKAKEE--GFKVLSEVG-------------K 135 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---H--------------HHHHHHHHHHCCT--TSEEEEEES--------------
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCH--------------HHHHHHHHHHHHC--CCEEeeccc-------------C
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014237 235 EDGVIMNDETVHQLCKQAVSQARAGADVV 263 (428)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Als~A~AGADiV 263 (428)
++..-+-..|++.+.+++...-+||||+|
T Consensus 136 K~~~~~~~~~~~~~i~~~~~dLeAGA~~V 164 (244)
T PF02679_consen 136 KDPESDFSLDPEELIEQAKRDLEAGADKV 164 (244)
T ss_dssp SSHHHHTT--CCHHHHHHHHHHHHTECEE
T ss_pred CCchhcccCCHHHHHHHHHHHHHCCCCEE
No 470
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.18 E-value=3.5e+02 Score=28.25 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYS 225 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv-----------i~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~-Pdl~VitDVcLc~YT 225 (428)
...+.++.+.+.|...|-|-+- ..+.-+|+.|..--|---++.+.|++||+++ ||..|..=+. +|.
T Consensus 145 ~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis--~~~ 222 (361)
T cd04747 145 AFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFS--QWK 222 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEC--ccc
Confidence 3556667788899999988632 1334678888777777788889999999998 5776766554 443
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014237 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (428)
Q Consensus 226 shGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSD 267 (428)
. .+. ..+.| .+-++++ +.+-.+.++|+|+|--|.
T Consensus 223 ~-~~~--~~~~g-~~~~e~~----~~~~~l~~~gvd~i~vs~ 256 (361)
T cd04747 223 Q-QDY--TARLA-DTPDELE----ALLAPLVDAGVDIFHCST 256 (361)
T ss_pred c-ccc--ccCCC-CCHHHHH----HHHHHHHHcCCCEEEecC
Confidence 2 111 11112 2334443 333334678999986654
No 471
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=29.16 E-value=72 Score=33.75 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC
Q 014237 243 ETVHQLCKQAVSQARAGADVVSP 265 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAP 265 (428)
.|+--=..||+.-|+|||++|+|
T Consensus 159 ~TlvFS~~QA~aaaeAGa~~ISP 181 (391)
T PRK12309 159 LTLLFGFHQAIACAEAGVTLISP 181 (391)
T ss_pred eeeecCHHHHHHHHHcCCCEEEe
Confidence 34444568999999999999999
No 472
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=29.14 E-value=93 Score=28.58 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=25.2
Q ss_pred chhcCCceEEecCCCchHHHHHHHHhh---CCCCeEEEEec
Q 014237 338 DESEGADILLVKPGLPYLDVIRLLRDK---YPLPIAAYQVS 375 (428)
Q Consensus 338 Di~EGADilMVKPal~YLDII~~vk~~---~~lPvaaYqVS 375 (428)
.+.+..|.|++--....+.+++.+++. .++|++.|.-+
T Consensus 180 ~~~~~~dai~~~~d~~a~~~~~~~~~~~~~~~ipvig~d~~ 220 (281)
T cd06325 180 SLAGKVDAIYVPTDNTVASAMEAVVKVANEAKIPVIASDDD 220 (281)
T ss_pred HhcccCCEEEEcCchhHHhHHHHHHHHHHHcCCCEEEcCHH
Confidence 333446888876555555677777664 47999988754
No 473
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=28.96 E-value=4.4e+02 Score=29.86 Aligned_cols=44 Identities=23% Similarity=0.247 Sum_probs=30.9
Q ss_pred hHHHHHHHHhchhcCCceEEec---------C---CCchHHHHHHHHhhCCCCeEE
Q 014237 328 YREALVEAQADESEGADILLVK---------P---GLPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 328 ~~EAlrE~~lDi~EGADilMVK---------P---al~YLDII~~vk~~~~lPvaa 371 (428)
.+|++.-+..=.+.|+|+|-|- | ...+++..+++|+.+++||.+
T Consensus 637 ~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~ 692 (765)
T PRK08255 637 PDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIA 692 (765)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEE
Confidence 3555544444355799999883 1 134588999999999999876
No 474
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=28.90 E-value=1.9e+02 Score=29.54 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHcCCCeEEE-eecCCC--CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 014237 158 GLVQEVAKARDVGVNSVVL-FPKVPD--ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L-Fgvi~~--~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~ 234 (428)
.+.+.++.+.+.|...|-| +|- |. ..+|..|+...+.-.++...++.++++.. +- .+|=+ --| +
T Consensus 78 ~~~~aA~~~~~~g~d~IdlN~gC-P~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~-~p--VsvKi----R~g----~- 144 (333)
T PRK11815 78 DLAEAAKLAEDWGYDEINLNVGC-PSDRVQNGRFGACLMAEPELVADCVKAMKDAVS-IP--VTVKH----RIG----I- 144 (333)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCC-CHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC-Cc--eEEEE----Eee----e-
Confidence 3666677778889999966 564 43 35788899988888899999999998752 11 11111 001 1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014237 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (428)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Als~A~AGADiVAPS 266 (428)
+.+.|.+.+.+.+-...++|+|.+.-.
T Consensus 145 -----~~~~t~~~~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 145 -----DDQDSYEFLCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred -----CCCcCHHHHHHHHHHHHHhCCCEEEEc
Confidence 112244445566666679999999855
No 475
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=28.83 E-value=2.3e+02 Score=27.39 Aligned_cols=103 Identities=14% Similarity=0.244 Sum_probs=59.7
Q ss_pred HHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEec-CCCchHH
Q 014237 278 AALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVK-PGLPYLD 356 (428)
Q Consensus 278 ~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK-Pal~YLD 356 (428)
+.+.+.|.+++.|+.--.-|...+.--|+++++ ....+...|+..-.+-...+.++ .+.++|+|++= ++-....
T Consensus 127 ~~~~~~g~~~vail~~~~~~g~~~~~~~~~~~~--~~v~~~~~~~~~~~d~~~~i~~l---~~~~pd~v~~~~~~~~~~~ 201 (333)
T cd06359 127 KYAQDKGYKRVFLIAPNYQAGKDALAGFKRTFK--GEVVGEVYTKLGQLDFSAELAQI---RAAKPDAVFVFLPGGMGVN 201 (333)
T ss_pred HHHHHhCCCeEEEEecCchhhHHHHHHHHHHhC--ceeeeeecCCCCCcchHHHHHHH---HhCCCCEEEEEccCccHHH
Confidence 344455677777774333344455555666553 12223445554444555555554 36899999982 2334677
Q ss_pred HHHHHHhh-C--CCCeEEEEechHHHHHHHHH
Q 014237 357 VIRLLRDK-Y--PLPIAAYQVSGEYSMIKAGG 385 (428)
Q Consensus 357 II~~vk~~-~--~lPvaaYqVSGEYaMIkaAa 385 (428)
+++.+++. + ++|+....-.++...++.+.
T Consensus 202 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g 233 (333)
T cd06359 202 FVKQYRQAGLKKDIPLYSPGFSDEEDTLPAVG 233 (333)
T ss_pred HHHHHHHcCcccCCeeeccCcccCHHHHHhcc
Confidence 88888875 3 46766555556666776643
No 476
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=28.80 E-value=1.6e+02 Score=28.03 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~Y 224 (428)
.+...++.+.+.|.++|.+.-.+.. +.+++.|.++||++-|+| .|+|+-
T Consensus 137 Tl~~ai~~L~~~G~~~I~v~~ll~~-----------------~~gl~~l~~~~p~v~i~~-~~id~~ 185 (207)
T TIGR01091 137 TMIAALDLLKKRGAKKIKVLSIVAA-----------------PEGIEAVEKAHPDVDIYT-AAIDEK 185 (207)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecC-----------------HHHHHHHHHHCCCCEEEE-EEECCC
Confidence 4788999999999999877654321 358899999999988875 456663
No 477
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=28.77 E-value=1.6e+02 Score=30.15 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCee
Q 014237 242 DETVHQLCKQAVSQARAGADVV 263 (428)
Q Consensus 242 D~Tl~~Lak~Als~A~AGADiV 263 (428)
++.++..++.|....+||.|.|
T Consensus 137 ~~ii~~f~~AA~ra~~aGfDgV 158 (343)
T cd04734 137 EEIIAAFADAARRCQAGGLDGV 158 (343)
T ss_pred HHHHHHHHHHHHHHHHcCCCEE
Confidence 4777778888888888999887
No 478
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=28.72 E-value=2.1e+02 Score=32.04 Aligned_cols=206 Identities=18% Similarity=0.185 Sum_probs=122.9
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe---eecccCCCCC
Q 014237 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT---DVALDPYSSD 227 (428)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit---DVcLc~YTsh 227 (428)
.|+..+ ++...++.+-+.|+.++=..|= ..-|. ..-|..+.+-. -+|.+|+..|+.-+-. =..+=-|+.
T Consensus 21 tr~~t~-d~~~ia~~~d~~g~~siE~~gG---atfd~--~~rfl~edpwe-rl~~~r~~~pnt~lqmL~Rg~N~vGy~~- 92 (596)
T PRK14042 21 TRMRTE-DMLPICNKMDDVGFWAMEVWGG---ATFDA--CLRFLKEDPWS-RLRQLRQALPNTQLSMLLRGQNLLGYRN- 92 (596)
T ss_pred cCCCHH-HHHHHHHHHHhcCCCEEEeeCC---cccce--eecccCCCHHH-HHHHHHHhCCCCceEEEecccccccccc-
Confidence 367775 5899999999999999999873 23333 44455566655 5899999999844332 111223311
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 014237 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (428)
Q Consensus 228 GHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMM---DGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGP 304 (428)
--|.-++..+++| ++.|.|++=--|-+ |.-..+|+.+. +.|..-.+-++|+.
T Consensus 93 ------------~~d~vv~~~v~~a---~~~Gidv~Rifd~lnd~~n~~~~i~~~k-~~G~~~~~~i~yt~--------- 147 (596)
T PRK14042 93 ------------YADDVVRAFVKLA---VNNGVDVFRVFDALNDARNLKVAIDAIK-SHKKHAQGAICYTT--------- 147 (596)
T ss_pred ------------CChHHHHHHHHHH---HHcCCCEEEEcccCcchHHHHHHHHHHH-HcCCEEEEEEEecC---------
Confidence 1233445555554 57899998655543 34445666665 46776777788864
Q ss_pred hhhhhcCCCCCCCccccCCCCCChHHHHHHHHhch-hcCCceEEecCCCch------HHHHHHHHhhCCCCeEEEEechH
Q 014237 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADE-SEGADILLVKPGLPY------LDVIRLLRDKYPLPIAAYQVSGE 377 (428)
Q Consensus 305 FRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi-~EGADilMVKPal~Y------LDII~~vk~~~~lPvaaYqVSGE 377 (428)
+| --.-|-+.+....+ +-|||.|.+|=-.-. -++++.+|+.+++|+ .+|---.
T Consensus 148 -------sp------------~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi-~~H~Hnt 207 (596)
T PRK14042 148 -------SP------------VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPV-HLHSHST 207 (596)
T ss_pred -------CC------------CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEE-EEEeCCC
Confidence 12 12233344444443 359999999844322 478999999999997 4555422
Q ss_pred H----HHHHHHHHCC--CCch---------hhHHHHHHH-HHHHhccc
Q 014237 378 Y----SMIKAGGALK--MIDE---------QRVMMESLM-CLRRAGAD 409 (428)
Q Consensus 378 Y----aMIkaAa~~G--~iD~---------~~~vlEsL~-~~kRAGAd 409 (428)
+ +-..+|+++| ++|- -..-+|++. ++++-|-+
T Consensus 208 ~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 208 SGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred CCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 2 3334567777 3332 134455544 45555554
No 479
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=28.71 E-value=2.4e+02 Score=29.18 Aligned_cols=88 Identities=24% Similarity=0.268 Sum_probs=52.8
Q ss_pred hhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEec---------CCC--c---hHHHHHHHHhhCCCCeE
Q 014237 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVK---------PGL--P---YLDVIRLLRDKYPLPIA 370 (428)
Q Consensus 305 FRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVK---------Pal--~---YLDII~~vk~~~~lPva 370 (428)
.|+...+.|-+++=-..|..+.+.++ ++++...+ +||.+-+. |.. . ++|+|+.+++..++||.
T Consensus 114 vr~~~p~~p~~aNl~~~~~~~~~~~~-~~~~~~~~--~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVi 190 (352)
T PRK05437 114 VRKVAPDGLLFANLGAVQLYGYGVEE-AQRAVEMI--EADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVI 190 (352)
T ss_pred HHHHCCCceEEeecCccccCCCCHHH-HHHHHHhc--CCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEE
Confidence 34444455554444455665433444 44444444 46665443 221 1 46999999999999999
Q ss_pred EEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 014237 371 AYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 371 aYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~Ii 412 (428)
+=.+ | .|. -.|....+.++|+|.|.
T Consensus 191 vK~~-g----------~g~------s~~~a~~l~~~Gvd~I~ 215 (352)
T PRK05437 191 VKEV-G----------FGI------SKETAKRLADAGVKAID 215 (352)
T ss_pred EEeC-C----------CCC------cHHHHHHHHHcCCCEEE
Confidence 5443 3 121 14666778889999987
No 480
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.67 E-value=64 Score=32.65 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=0.0
Q ss_pred ccccchhhhhcCCCCCCCccccCCCCCChHHHHHHHHhchhcCCceEEecCCCchHHHHHHHHhhCCC----CeEEEEec
Q 014237 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPL----PIAAYQVS 375 (428)
Q Consensus 300 afYGPFRdAa~Sap~fgDRktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~YLDII~~vk~~~~l----PvaaYqVS 375 (428)
+||| |.+|+...-++.--+.-++-..|.+||...+ +-|||+||. .-...+-++++.+...- |-..=.+|
T Consensus 165 ~~~~-i~~av~~~r~~~~~~kIeVEv~~leea~~a~----~agaDiI~L--Dn~~~e~l~~~v~~l~~~~~~~~~~leaS 237 (278)
T PRK08385 165 ALVP-LEEAIRRAKEFSVYKVVEVEVESLEDALKAA----KAGADIIML--DNMTPEEIREVIEALKREGLRERVKIEVS 237 (278)
T ss_pred HHHH-HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH----HcCcCEEEE--CCCCHHHHHHHHHHHHhcCcCCCEEEEEE
Q ss_pred hHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 014237 376 GEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 376 GEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiT 413 (428)
| .+=+|.+..+...|+|+|.|
T Consensus 238 G-----------------GI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 238 G-----------------GITPENIEEYAKLDVDVISL 258 (278)
T ss_pred C-----------------CCCHHHHHHHHHcCCCEEEe
No 481
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=28.58 E-value=2e+02 Score=29.63 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=50.2
Q ss_pred cccCCCCCChHHHHHHHHhchhcCCceEEecCCCch-------------HHHHHHHHhhCCCCeEEEEechHHHHHHHHH
Q 014237 319 KTYQMNPANYREALVEAQADESEGADILLVKPGLPY-------------LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 385 (428)
Q Consensus 319 ktYQmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-------------LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa 385 (428)
-.--||.-|.+.|-- -++-||=-|||=--+|+ .+-|+.+|+..++||.+=-=
T Consensus 9 ~g~~~~v~~~~qa~~----ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K----------- 73 (283)
T cd04727 9 GGVIMDVTNAEQARI----AEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVR----------- 73 (283)
T ss_pred CCeEEEeCCHHHHHH----HHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeee-----------
Confidence 344588888887643 25689999999544444 88899999999999987421
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEe
Q 014237 386 ALKMIDEQRVMMESLMCLRRAGADII 411 (428)
Q Consensus 386 ~~G~iD~~~~vlEsL~~~kRAGAd~I 411 (428)
.|+ ++-...+-.+|+|+|
T Consensus 74 -~~~-------~~Ea~~L~eaGvDiI 91 (283)
T cd04727 74 -IGH-------FVEAQILEALGVDMI 91 (283)
T ss_pred -hhH-------HHHHHHHHHcCCCEE
Confidence 222 444456677899998
No 482
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=28.55 E-value=62 Score=36.42 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=36.2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCCCceeec
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiV--APSDMMD-GRV~aIR~aLD~~Gf~~v~IMS 292 (428)
.-|-++|| +|....++||||+| +=-||=| --+..||+.|.+.|+ ++++++
T Consensus 37 T~D~~atv----~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~-~iPLVA 89 (611)
T PRK02048 37 TMDTEACV----AQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGY-MVPLVA 89 (611)
T ss_pred cccHHHHH----HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC-CCCEEE
Confidence 33445555 56677899999997 3334433 347889999999998 699986
No 483
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=28.50 E-value=1.2e+02 Score=30.30 Aligned_cols=62 Identities=27% Similarity=0.379 Sum_probs=36.5
Q ss_pred HHHHhchh-cCCceEEecCCCch----HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc
Q 014237 333 VEAQADES-EGADILLVKPGLPY----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 407 (428)
Q Consensus 333 rE~~lDi~-EGADilMVKPal~Y----LDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAG 407 (428)
.+.....+ -||+.|-|==.-.| ++-++.+++.+++|+-. +-||=.+--+.|+ +.+|
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~---------------KDFIid~~QI~eA----~~~G 131 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLR---------------KDFIIDPYQIYEA----RAAG 131 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEE---------------ES---SHHHHHHH----HHTT
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCccc---------------ccCCCCHHHHHHH----HHcC
Confidence 33444444 56999877544433 88899999999999988 4444333344554 6789
Q ss_pred ccEeeh
Q 014237 408 ADIILT 413 (428)
Q Consensus 408 Ad~IiT 413 (428)
||.|+-
T Consensus 132 ADaVLL 137 (254)
T PF00218_consen 132 ADAVLL 137 (254)
T ss_dssp -SEEEE
T ss_pred CCEeeh
Confidence 998753
No 484
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=28.47 E-value=1.6e+02 Score=30.12 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=41.4
Q ss_pred cCCceEEecCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHH
Q 014237 341 EGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAA 420 (428)
Q Consensus 341 EGADilMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~iD~~~~vlEsL~~~kRAGAd~IiTYfA~e~a 420 (428)
.|++.+-.--....-..++++++ .+++|.+|-| |.. +.+..+.+.|+|.|||-+-..+.
T Consensus 221 ~~~~~i~~~~~~l~~~~v~~~~~-~G~~v~vWTV----------------Nd~----~~~~~l~~~GVDgIiTD~P~~l~ 279 (315)
T cd08609 221 DGGNFMNLPYQDLSALEIKELRK-DNVSVNLWVV----------------NEP----WLFSLLWCSGVSSVTTNACQLLK 279 (315)
T ss_pred cCCeEEecccccCCHHHHHHHHH-CCCEEEEECC----------------CCH----HHHHHHHhcCCCEEEcCCHHHHH
Confidence 36776543223334456777766 4899999998 332 23445666799999999976666
Q ss_pred HHHh
Q 014237 421 RCLC 424 (428)
Q Consensus 421 ~wL~ 424 (428)
++++
T Consensus 280 ~~~~ 283 (315)
T cd08609 280 DMSK 283 (315)
T ss_pred Hhhh
Confidence 6554
No 485
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=28.35 E-value=2.9e+02 Score=28.99 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=54.5
Q ss_pred HcCCCeEEEeecCCCCCCCcccCcCcCCCCC----HHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc-ccH
Q 014237 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGL----VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI-MND 242 (428)
Q Consensus 168 ~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~----v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g~I-dND 242 (428)
++|+.-+.+... |+... +. ..||-. ++...+.+|+.--|+.|+.|=--| -+++++++|.+ ..|
T Consensus 186 ~lg~~vv~~~~~-~d~~F---p~--~~p~P~~~~~l~~l~~~v~~~~adlGia~DgD~D------R~~ivd~~G~~l~~d 253 (445)
T PRK09542 186 GLPITLLPLYFE-LDGTF---PN--HEANPLDPANLVDLQAFVRETGADIGLAFDGDAD------RCFVVDERGQPVSPS 253 (445)
T ss_pred hCCCEEEEEecC-cCCCC---CC--CCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCc------eEEEECCCCCCccHH
Confidence 678877766554 22111 11 233332 345555566666799999885433 45899887754 558
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCC
Q 014237 243 ETVHQLCKQAVSQARAGADVVSPSD 267 (428)
Q Consensus 243 ~Tl~~Lak~Als~A~AGADiVAPSD 267 (428)
.++..+++.-+.. ..|..||.|-.
T Consensus 254 ~~~~l~~~~~l~~-~~~~~vv~~v~ 277 (445)
T PRK09542 254 AVTALVAARELAR-EPGATIIHNLI 277 (445)
T ss_pred HHHHHHHHHHHHH-CCCCeEEEeec
Confidence 8888888777765 45677876643
No 486
>PLN02389 biotin synthase
Probab=28.34 E-value=1.6e+02 Score=30.84 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 014237 145 GAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (428)
Q Consensus 145 ~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~Y 224 (428)
+..+..+.++.+ ++++.++++.+.|++.|.+ +. ..++..+....- .-+.++++.||+..+++.
T Consensus 108 ~~~~~~~~Ls~E-eIl~~a~~~~~~G~~~~~i-vt---s~rg~~~e~~~~--e~i~eiir~ik~~~l~i~---------- 170 (379)
T PLN02389 108 TGVKAQKLMSKD-DVLEAAKRAKEAGSTRFCM-GA---AWRDTVGRKTNF--NQILEYVKEIRGMGMEVC---------- 170 (379)
T ss_pred CCCcccccCCHH-HHHHHHHHHHHcCCCEEEE-Ee---cccCCCCChhHH--HHHHHHHHHHhcCCcEEE----------
Q ss_pred CCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014237 225 SSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (428)
Q Consensus 225 TshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiV 263 (428)
-..|+++ -++.-.+.+||+|.+
T Consensus 171 ---~s~G~l~--------------~E~l~~LkeAGld~~ 192 (379)
T PLN02389 171 ---CTLGMLE--------------KEQAAQLKEAGLTAY 192 (379)
T ss_pred ---ECCCCCC--------------HHHHHHHHHcCCCEE
No 487
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=28.21 E-value=1.5e+02 Score=32.53 Aligned_cols=84 Identities=13% Similarity=0.032 Sum_probs=52.9
Q ss_pred HHHHHHHHhchhcCCceEEecCCC--c----hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC---CchhhHHH-H
Q 014237 329 REALVEAQADESEGADILLVKPGL--P----YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM---IDEQRVMM-E 398 (428)
Q Consensus 329 ~EAlrE~~lDi~EGADilMVKPal--~----YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~---iD~~~~vl-E 398 (428)
++.+..+..=+++|||||=|==.. + =..+|+.+++.+++|+..= |-....+++|.++|. .|-..--+ |
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISID--T~~~~v~eaAL~aGAdiINsVs~~~~d~ 242 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALDSPVIAD--TPTLDELYEALKAGASGVIMPDVENAVE 242 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEe--CCCHHHHHHHHHcCCCEEEECCccchhH
Confidence 455666777789999999774322 2 4578888888888997653 334456777777762 12111112 3
Q ss_pred HHHHHHHhcccEeehh
Q 014237 399 SLMCLRRAGADIILTY 414 (428)
Q Consensus 399 sL~~~kRAGAd~IiTY 414 (428)
.+.-+++.|+-+|+..
T Consensus 243 ~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 243 LASEKKLPEDAFVVVP 258 (499)
T ss_pred HHHHHHHcCCeEEEEc
Confidence 3334677788888843
No 488
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=28.21 E-value=59 Score=32.95 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=25.8
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCC
Q 014237 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPD 182 (428)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~ 182 (428)
||+- ..+.+.++++++.|++.+++||.-|-
T Consensus 100 ry~~-P~i~~~l~~l~~~G~~~iv~lPL~Pq 129 (322)
T TIGR00109 100 RYGE-PFTEEAVKELLKDGVERAVVLPLYPH 129 (322)
T ss_pred ccCC-CCHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 7775 46889999999999999999998664
No 489
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=28.21 E-value=3e+02 Score=26.12 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=30.0
Q ss_pred hcCCceEEecCC-CchHHHHHHHHhh-CCCCeEEEEechHHHHHHHH--HHCCC
Q 014237 340 SEGADILLVKPG-LPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAG--GALKM 389 (428)
Q Consensus 340 ~EGADilMVKPa-l~YLDII~~vk~~-~~lPvaaYqVSGEYaMIkaA--a~~G~ 389 (428)
++++|.|++=-. ..-.-+++.+++. .+.|+..-.....=.+++.+ +..|+
T Consensus 186 ~~~pdaIi~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~~~~~~~~~g~~~~g~ 239 (312)
T cd06333 186 AARPDAVLIWGSGTPAALPAKNLRERGYKGPIYQTHGVASPDFLRLAGKAAEGA 239 (312)
T ss_pred hCCCCEEEEecCCcHHHHHHHHHHHcCCCCCEEeecCcCcHHHHHHhhHhhcCc
Confidence 568999988542 2345688888874 46777654333333455552 34565
No 490
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=27.99 E-value=1.2e+02 Score=30.53 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeecCCCc
Q 014237 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDGV 238 (428)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YTshGHcGil~~~g~ 238 (428)
.+.++++++.|..+|++=+. . ++.+-.+.++.+..+-..+ ++-|-..+ ||.| -.+|+.
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s--~----------l~~~eni~~t~~v~~~a~~~gv~Ve~El--------G~~g-g~ed~~ 145 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGS--H----------LPFEENLALTKKVVEIAHAKGVSVEAEL--------GTLG-GIEDGV 145 (282)
T ss_pred HHHHHHHHHcCCCEEEECCC--C----------CCHHHHHHHHHHHHHHHHHcCCEEEEee--------CCCc-Cccccc
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014237 239 IMNDETVHQLCKQAVSQARAGADVVSPS 266 (428)
Q Consensus 239 IdND~Tl~~Lak~Als~A~AGADiVAPS 266 (428)
+.++.+...+-+..-...+.|+|.+|+|
T Consensus 146 ~g~~~~~t~~eea~~f~~~tgvD~Lavs 173 (282)
T TIGR01859 146 DEKEAELADPDEAEQFVKETGVDYLAAA 173 (282)
T ss_pred cccccccCCHHHHHHHHHHHCcCEEeec
No 491
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=27.92 E-value=1.1e+02 Score=32.60 Aligned_cols=161 Identities=21% Similarity=0.242 Sum_probs=85.5
Q ss_pred HCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCc
Q 014237 209 RYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288 (428)
Q Consensus 209 ~~Pdl~VitDVcLc~YTshGHcGil~~~g~IdND~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v 288 (428)
..-|++|++=|-+.|= =++|.-+.+.--.|..+ ||+.|+ +|+-.+
T Consensus 103 ~~~~~~i~~~v~~~~~--------------~~d~~~~~~~ny~at~~-------------------ai~~a~--~~~p~~ 147 (391)
T PRK13307 103 KAEDLVIVASVFIHPT--------------AKDYNKIYQYNYGATKL-------------------AIKRAL--EGFPDV 147 (391)
T ss_pred hcCcEEEEEEEEcCch--------------hccHHHHHHHHHHHHHH-------------------HHHHHH--hCCCCH
Confidence 4568999999998871 13566666665555554 355555 344333
Q ss_pred eeechhhhhccccccchhhhhcCCCCCCCcccc--CCCCCChHHHHHHHHhchhcCCceEEecCCCch-----HHHHHHH
Q 014237 289 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTY--QMNPANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLL 361 (428)
Q Consensus 289 ~IMSYsaKyASafYGPFRdAa~Sap~fgDRktY--QmdpaN~~EAlrE~~lDi~EGADilMVKPal~Y-----LDII~~v 361 (428)
-=+=+--+-++.=+..||.-= .-|+--- =+|.-+.+||++=+. .+.+ .|..++|=|++. +++|+++
T Consensus 148 ~~~~~~~~~~~h~~~~~~~~~-----~~~~p~L~vALD~~~~~~A~~i~~-~l~~-~~~~~iKvG~~L~~~~G~~iVk~L 220 (391)
T PRK13307 148 DKVLYEKDRALHPIMGFKVTR-----LWDPPYLQVALDLPDLEEVERVLS-QLPK-SDHIIIEAGTPLIKKFGLEVISKI 220 (391)
T ss_pred HHHHhhhhcccCCccccchhh-----hcccceEEEecCCCCHHHHHHHHH-hccc-ccceEEEECHHHHHHhCHHHHHHH
Confidence 322222222222223344221 1122222 257778889887443 4433 334478888765 8999999
Q ss_pred HhhC-CCCeEEE---EechHHHHHHHHHHCCCC-------chhhHHHHHHHHHHHhcccEee
Q 014237 362 RDKY-PLPIAAY---QVSGEYSMIKAGGALKMI-------DEQRVMMESLMCLRRAGADIIL 412 (428)
Q Consensus 362 k~~~-~lPvaaY---qVSGEYaMIkaAa~~G~i-------D~~~~vlEsL~~~kRAGAd~Ii 412 (428)
|+.+ +.|+++= +=-|+|- ++.+++.|.= -....+.+.+..+|..|...++
T Consensus 221 r~~~~~~~I~~DLK~~Di~~~v-v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 221 REVRPDAFIVADLKTLDTGNLE-ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred HHhCCCCeEEEEecccChhhHH-HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE
Confidence 9984 6777652 1112332 4444444420 1123455555666666666655
No 492
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=27.89 E-value=1e+02 Score=33.72 Aligned_cols=46 Identities=28% Similarity=0.458 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014237 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (428)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit 217 (428)
=...++-+++.|++-|+| +. ..|.+-| -..-|+.||++||++-||+
T Consensus 252 dK~rl~ll~~aGvdvviL----DS----SqGnS~~-----qiemik~iK~~yP~l~Via 297 (503)
T KOG2550|consen 252 DKERLDLLVQAGVDVVIL----DS----SQGNSIY-----QLEMIKYIKETYPDLQIIA 297 (503)
T ss_pred hhHHHHHhhhcCCcEEEE----ec----CCCcchh-----HHHHHHHHHhhCCCceeec
Confidence 367788899999999988 22 2344333 2378999999999999886
No 493
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=27.87 E-value=4.2e+02 Score=24.74 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=27.8
Q ss_pred ChHHHHHHHHhchhcCCceEEe-------cCCCchHHHHHHHHhhCCCCeEE
Q 014237 327 NYREALVEAQADESEGADILLV-------KPGLPYLDVIRLLRDKYPLPIAA 371 (428)
Q Consensus 327 N~~EAlrE~~lDi~EGADilMV-------KPal~YLDII~~vk~~~~lPvaa 371 (428)
|..|..+.-. +.|+|.+.| +.....+++|+++++.+++|+.+
T Consensus 31 ~~~~~a~~~~---~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~ 79 (233)
T PRK00748 31 DPVAQAKAWE---DQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQV 79 (233)
T ss_pred CHHHHHHHHH---HcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEE
Confidence 4444444432 257776654 23347899999999999999643
No 494
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=27.80 E-value=6.2e+02 Score=25.19 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcC-------CCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 014237 159 LVQEVAKARDVG-------VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (428)
Q Consensus 159 l~~~v~~~~~~G-------I~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~P-dl~VitDVcLc~YTshGHc 230 (428)
+...++++.+.+ -+-+++||. -. . .+=+...-++.+.+.+| ++.+..-+.-++=...|+.
T Consensus 171 ~~sml~~~l~~~~~~~~~~~~v~L~~g~-R~----~-------~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~ 238 (307)
T PLN03116 171 FRGFLRRMFMEDVPAFKFGGLAWLFLGV-AN----S-------DSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGK 238 (307)
T ss_pred HHHHHHHHHhhccccccCCCcEEEEEec-CC----c-------ccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCc
Confidence 555555555444 245678885 21 1 12345667888888898 5655433322221223444
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCC--eecCCCCCCchHHHHHHHHHHCCC
Q 014237 231 GIVREDGVIMNDETVHQLCKQAVSQARAGAD--VVSPSDMMDGRVGAIRAALDAEGF 285 (428)
Q Consensus 231 Gil~~~g~IdND~Tl~~Lak~Als~A~AGAD--iVAPSDMMDGRV~aIR~aLD~~Gf 285 (428)
|.+. +.+.+ +.+..+.....+++ +-.|..||+.-..++++.|.+.|.
T Consensus 239 g~v~--~~l~~------~~~~~~~~~~~~~~vYiCGp~~mv~~v~~~L~~~~~~~g~ 287 (307)
T PLN03116 239 MYVQ--DKIEE------YSDEIFKLLDNGAHIYFCGLKGMMPGIQDTLKRVAEERGE 287 (307)
T ss_pred cchh--hHHHH------HHHHHHhhhcCCcEEEEeCCHHHHHHHHHHHHHHHHHcCc
Confidence 5442 22222 11111122224544 346999999999999999998884
No 495
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.77 E-value=5.2e+02 Score=24.34 Aligned_cols=180 Identities=19% Similarity=0.189 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~VitDVcLc~YTshGHcGil~~~g 237 (428)
..++.++.+.+.|++.+.+.= ||. +.+........|+.|.+.++ +-+ ++ +|
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~d------l~~----~~~~~~~~~~~i~~i~~~~~-~~l----------------~v--~G 83 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVD------LDG----AFEGERKNAEAIEKIIEAVG-VPV----------------QL--GG 83 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEe------chh----hhcCCcccHHHHHHHHHHcC-CcE----------------EE--cC
Confidence 379999999999999987642 221 11122233456676666542 111 23 36
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccchhhhhcCCCCCC
Q 014237 238 VIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (428)
Q Consensus 238 ~IdND~Tl~~Lak~Als~A~AGADiVA-PSDMMDGRV~aIR~aLD~~Gf~~v~IMSYsaKyASafYGPFRdAa~Sap~fg 316 (428)
-|...+.++.+.+ +|||.|. -+.++. ....+++..+.-|-+. .+.|-++|- |+.. + .|
T Consensus 84 Gi~~~~~~~~~~~-------~Ga~~v~iGs~~~~-~~~~~~~i~~~~g~~~-i~~sid~~~-----~~v~--~-----~g 142 (241)
T PRK13585 84 GIRSAEDAASLLD-------LGVDRVILGTAAVE-NPEIVRELSEEFGSER-VMVSLDAKD-----GEVV--I-----KG 142 (241)
T ss_pred CcCCHHHHHHHHH-------cCCCEEEEChHHhh-ChHHHHHHHHHhCCCc-EEEEEEeeC-----CEEE--E-----CC
Confidence 6666666655543 8998543 333331 2334566665555433 334444431 1111 0 02
Q ss_pred CccccCCCCCChHHHHHHHHhchhcCCceEEe---cCC----CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC
Q 014237 317 DKKTYQMNPANYREALVEAQADESEGADILLV---KPG----LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 389 (428)
Q Consensus 317 DRktYQmdpaN~~EAlrE~~lDi~EGADilMV---KPa----l~YLDII~~vk~~~~lPvaaYqVSGEYaMIkaAa~~G~ 389 (428)
.+.. .-.+..|..++. .+.|+|.|.+ ++. .+-+++|+++++.+++|+.+ .|-
T Consensus 143 ~~~~---~~~~~~~~~~~~---~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia---------------~GG 201 (241)
T PRK13585 143 WTEK---TGYTPVEAAKRF---EELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIA---------------SGG 201 (241)
T ss_pred Cccc---CCCCHHHHHHHH---HHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEE---------------eCC
Confidence 1111 012445555555 4689998886 432 35689999999999999765 233
Q ss_pred Cc-hhhHHHHHHHHHHHhcccEeeh
Q 014237 390 ID-EQRVMMESLMCLRRAGADIILT 413 (428)
Q Consensus 390 iD-~~~~vlEsL~~~kRAGAd~IiT 413 (428)
+. .++ +..++++||+.++.
T Consensus 202 I~~~~d-----i~~~~~~Ga~gv~v 221 (241)
T PRK13585 202 VTTLDD-----LRALKEAGAAGVVV 221 (241)
T ss_pred CCCHHH-----HHHHHHcCCCEEEE
Confidence 33 333 33457789997653
No 496
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=27.73 E-value=45 Score=32.05 Aligned_cols=54 Identities=31% Similarity=0.488 Sum_probs=40.0
Q ss_pred cccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014237 142 TPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (428)
Q Consensus 142 ~~I~SMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit 217 (428)
..|..+||++ -..|+..++++|.+-|-|||. .. .| =..-|+.|+.-||++-+|.
T Consensus 100 ~~i~~iPG~~-------TptEi~~A~~~G~~~vK~FPA-~~-----~G---------G~~~ik~l~~p~p~~~~~p 153 (196)
T PF01081_consen 100 YGIPYIPGVM-------TPTEIMQALEAGADIVKLFPA-GA-----LG---------GPSYIKALRGPFPDLPFMP 153 (196)
T ss_dssp HTSEEEEEES-------SHHHHHHHHHTT-SEEEETTT-TT-----TT---------HHHHHHHHHTTTTT-EEEE
T ss_pred cCCcccCCcC-------CHHHHHHHHHCCCCEEEEecc-hh-----cC---------cHHHHHHHhccCCCCeEEE
Confidence 4788999992 467899999999999999995 21 11 0357889998899977653
No 497
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=27.72 E-value=4e+02 Score=23.03 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHhchhcCCceEEe---cCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCch------hh
Q 014237 325 PANYREALVEAQADESEGADILLV---KPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------QR 394 (428)
Q Consensus 325 paN~~EAlrE~~lDi~EGADilMV---KPal~YLDII~~vk~~~-~lPvaaYqVSGEYaMIkaAa~~G~iD~------~~ 394 (428)
..|..+++.... +...|+|++ -|.+.-+++++.+++.. ..|+..+.-.++-.....+.+.|..+. ..
T Consensus 31 ~~~~~~~~~~~~---~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~ 107 (204)
T PRK09958 31 LTEGGSAVQRVE---TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMN 107 (204)
T ss_pred eCCHHHHHHHHH---ccCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHH
Confidence 457778876654 346899988 46667789999999865 588888877777777778888886543 33
Q ss_pred HHHHHHHHHHH
Q 014237 395 VMMESLMCLRR 405 (428)
Q Consensus 395 ~vlEsL~~~kR 405 (428)
.+.+.+..+.+
T Consensus 108 ~l~~~i~~~~~ 118 (204)
T PRK09958 108 NIIAAIEAAKN 118 (204)
T ss_pred HHHHHHHHHHc
Confidence 45555555554
No 498
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=27.69 E-value=74 Score=29.96 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeec
Q 014237 196 NGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVR 234 (428)
Q Consensus 196 ~g~v~rAIr~iK~~~P-dl~VitDVcLc~YTshGHcGil~ 234 (428)
+-....++..++++|| +-++-+-|-+||=|-|=|..++-
T Consensus 101 ~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~~vP 140 (196)
T PF01076_consen 101 KRWFEDSLEWLQERYGNENIVSAVVHLDETTPHMHFDVVP 140 (196)
T ss_pred HHHHHHHHHHHHHHCCchhEEEEEEECCCCCcceEEEEee
Confidence 3456788999999999 78888899999999999999983
No 499
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=27.65 E-value=2.3e+02 Score=28.97 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=27.3
Q ss_pred hhcCCceEEecCCCc----------------hHHHHHHHHhhC-CCCeEE
Q 014237 339 ESEGADILLVKPGLP----------------YLDVIRLLRDKY-PLPIAA 371 (428)
Q Consensus 339 i~EGADilMVKPal~----------------YLDII~~vk~~~-~lPvaa 371 (428)
.+.|+|+|.|-+... .++.|+++|+.+ .+||.+
T Consensus 151 ~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~ 200 (318)
T TIGR00742 151 SGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEI 200 (318)
T ss_pred HHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEE
Confidence 369999999988753 468899999988 799875
No 500
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.62 E-value=5.6e+02 Score=27.54 Aligned_cols=116 Identities=16% Similarity=0.258 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eecccC----CCCCCccee
Q 014237 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDP----YSSDGHDGI 232 (428)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~KD~~Gs~A~~~~g~v~rAIr~iK~~~Pdl~Vit-DVcLc~----YTshGHcGi 232 (428)
+..++++.+++.|+.-|.| +..+ |. .--+...|+.||+.||++.||+ ||+-=+ --..|-|+|
T Consensus 153 ~~~~~v~~lv~aGvDvI~i----D~a~----g~-----~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I 219 (404)
T PRK06843 153 DTIERVEELVKAHVDILVI----DSAH----GH-----STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCL 219 (404)
T ss_pred HHHHHHHHHHhcCCCEEEE----ECCC----CC-----ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEE
Confidence 4679999999999998777 2111 11 2346678999999999986654 664111 112355555
Q ss_pred ecC--CCc------ccc--HHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCce
Q 014237 233 VRE--DGV------IMN--DETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS 289 (428)
Q Consensus 233 l~~--~g~------IdN--D~Tl~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~ 289 (428)
.-. .|. ++. ..++..+...+-...+-|..|||=..+..+ +-|.++|. .|=.-|.
T Consensus 220 ~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~--~Di~KALa-lGA~aVm 283 (404)
T PRK06843 220 KVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFS--GDVVKAIA-AGADSVM 283 (404)
T ss_pred EECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCH--HHHHHHHH-cCCCEEE
Confidence 311 111 111 123333333333223557888764444433 56778884 6643343
Done!