RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014237
(428 letters)
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Length = 356
Score = 584 bits (1507), Expect = 0.0
Identities = 185/347 (53%), Positives = 245/347 (70%), Gaps = 3/347 (0%)
Query: 84 VPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTP 143
+ P+ LP+ RPRRNRK+ A+R QE + P++ +YPLF+H+ E P
Sbjct: 1 MTPRGPLDNNNYGEVWLPIQARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVP 60
Query: 144 IGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTI 203
I +MPG RL L++EV +AR G+ + +LFPKV D LKS +E+YN +GL+PR I
Sbjct: 61 IPSMPGQSRLSMED-LLKEVGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAI 119
Query: 204 WLLKDRYPDLVIYTDVALDPYSSDGHDGIVR-EDGVIMNDETVHQLCKQAVSQARAGADV 262
LK+ +PD+++ DVALDPYSS GHDG+V + G I+ND TVHQLCKQA++ ARAGAD+
Sbjct: 120 MALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADM 179
Query: 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG-DKKTY 321
V PSDMMDGRV AIR +LD EG SI++Y+ KYASSFYGPFR+ALDS+ G DKKTY
Sbjct: 180 VCPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTY 239
Query: 322 QMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMI 381
QM+P+N REA EA+AD SEGAD+L+VKPGLPYLDV+ +R+K LP+ AY VSGEY+M+
Sbjct: 240 QMDPSNSREAEREAEADASEGADMLMVKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAML 299
Query: 382 KAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR 428
KA I E+ ++E L RRAGAD + TY+A +AA+ + + +
Sbjct: 300 KAAAEKGYISEKDTVLEVLKSFRRAGADAVATYYAKEAAKWMVEDMK 346
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole
biosynthesis, ALAD, porphyrin biosynt heme biosynthesis,
lyase; 2.6A {Prosthecochloris vibrioformis} SCOP:
c.1.10.3 PDB: 2c1h_A*
Length = 328
Score = 556 bits (1435), Expect = 0.0
Identities = 173/328 (52%), Positives = 228/328 (69%), Gaps = 5/328 (1%)
Query: 97 VPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRLGW 155
+ L + RPRR R++ A+R QE L+ + V+PLF+ G + +MPG +R
Sbjct: 4 LDLLNIVHRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTI 63
Query: 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215
V+E + D+G+ + LF +P+ K+ G EAYNDNG++ + I +K P+L I
Sbjct: 64 DR-AVEECKELYDLGIQGIDLFG-IPE-QKTEDGSEAYNDNGILQQAIRAIKKAVPELCI 120
Query: 216 YTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGA 275
TDVALDP++ GHDG+V +DG+I+NDETV L K AVS A AGAD VSPSDMMDGR+GA
Sbjct: 121 MTDVALDPFTPFGHDGLV-KDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGA 179
Query: 276 IRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEA 335
IR ALD V I+SY AKYASSFYGPFR+AL S P+FGDK TYQMNPAN EA+ E
Sbjct: 180 IREALDETDHSDVGILSYAAKYASSFYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKEV 239
Query: 336 QADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV 395
+ D EGADI++VKPGL YLD++ ++++ +P+A Y VSGEY+M+KA A IDE RV
Sbjct: 240 ELDIVEGADIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRV 299
Query: 396 MMESLMCLRRAGADIILTYFALQAARCL 423
MMESL+C++RAGADII TY+A +AA+ L
Sbjct: 300 MMESLLCMKRAGADIIFTYYAKEAAKKL 327
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution,
metalloenzyme, porphobilinogen synthase, protein
engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A*
1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A
2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Length = 337
Score = 550 bits (1419), Expect = 0.0
Identities = 148/333 (44%), Positives = 211/333 (63%), Gaps = 6/333 (1%)
Query: 94 TPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDT-PIGAMPGCYR 152
TP + P R RRNR+ R +E L+ + + P+F+ +G I +MPG R
Sbjct: 4 TPANRAYP-YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVER 62
Query: 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212
L L+ E + +G+ ++ LFP P KS EAYN G+ R L++R+P+
Sbjct: 63 LSIDQ-LLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPE 121
Query: 213 LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272
L I TDV L +++ G GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR
Sbjct: 122 LGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGR 181
Query: 273 VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF--GDKKTYQMNPANYRE 330
+GAIR AL++ G +V +M+Y+AKYAS++YGPFR+A+ S G++ TYQM+PAN E
Sbjct: 182 IGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPANSDE 241
Query: 331 ALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI 390
AL E AD +EGAD+++VKPG+PYLD++R ++D++ P YQVSGEY+M +
Sbjct: 242 ALHEVAADLAEGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWL 301
Query: 391 DEQRVMMESLMCLRRAGADIILTYFALQAARCL 423
E V++ESL +RAGAD ILTYFA QAA L
Sbjct: 302 AE-SVILESLTAFKRAGADGILTYFAKQAAEQL 333
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A
{Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A*
1b4e_A
Length = 323
Score = 534 bits (1377), Expect = 0.0
Identities = 157/321 (48%), Positives = 216/321 (67%), Gaps = 6/321 (1%)
Query: 102 LSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLV 160
L +RPRR RKSPA+RA F+ET LS + V P+F+ E +D + AMPG R+ +H L
Sbjct: 3 LIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH-LA 61
Query: 161 QEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220
+E+ + + G+ SV+ F + TG +A+ ++GLV R + K P++++ +D
Sbjct: 62 REIERIANAGIRSVMTFG-ISH-HTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTC 119
Query: 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280
Y+S GH G++ E GV ND T+ L KQAV A AGAD ++PS MDG+V AIR AL
Sbjct: 120 FCEYTSHGHCGVLCEHGV-DNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQAL 178
Query: 281 DAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADES 340
DA GF+ +IMSY+ K+ASSFYGPFREA S + GD+K+YQMNP N REA+ E+ DE+
Sbjct: 179 DAAGFKDTAIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPMNRREAIRESLLDEA 237
Query: 341 EGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESL 400
+GAD L+VKP YLD++R LR++ LPI AYQVSGEY+MIK IDE++V++ESL
Sbjct: 238 QGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESL 297
Query: 401 MCLRRAGADIILTYFALQAAR 421
++RAGAD+I +YFAL A
Sbjct: 298 GSIKRAGADLIFSYFALDLAE 318
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase,
tetrapyrrole biosynthesis, reactio intermediate, lyase;
HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB:
1e51_A* 2z0i_A 2z1b_A
Length = 330
Score = 527 bits (1361), Expect = 0.0
Identities = 128/327 (39%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 105 RPRRNRKSPAMRA-----SFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRLGWRHG 158
+P+ S + T L+ +N +YP+F+ + + PI ++PG R G +
Sbjct: 2 QPQSVLHSGYLHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR- 60
Query: 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218
L + + + G+ V++F K G A ++ I LL+ +P+L++ D
Sbjct: 61 LEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACD 120
Query: 219 VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRA 278
V L PY+S GH G++ E+G +E+ +L + A++ A+AG VV+PSDMMDGRV AI+
Sbjct: 121 VCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE 180
Query: 279 ALDAEGFQ-HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQA 337
AL A G VS+MSY+AK+AS FYGPFR+A S+P FGD++ YQ+ P AL
Sbjct: 181 ALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDR 240
Query: 338 DESEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVM 396
D EGAD+L+VKPG+PYLD++R ++DK+P LP+A Y VSGE++M+ G D + +
Sbjct: 241 DVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAV 300
Query: 397 MESLMCLRRAGADIILTYFALQAARCL 423
+E++ RRAGADII+TY+ Q + L
Sbjct: 301 LEAMTAFRRAGADIIITYYTPQLLQWL 327
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
1aw5_A
Length = 342
Score = 512 bits (1320), Expect = 0.0
Identities = 117/333 (35%), Positives = 175/333 (52%), Gaps = 5/333 (1%)
Query: 95 PVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRL 153
+S P +R E L+ ++PLFI + + T I ++P R+
Sbjct: 7 LETEPTEISSVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRI 66
Query: 154 GWRHGLVQEVAKARDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212
G + L + G+ SV+LF + K P G A + G V + I +++ +P+
Sbjct: 67 G-VNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPE 125
Query: 213 LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272
L I DV L Y+S GH G++ +DG I + +V +L AV+ A+AGA V+PSDM+DGR
Sbjct: 126 LYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGR 185
Query: 273 VGAIRAALDAEGFQH-VSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREA 331
+ I+ L H ++SY AK++ + YGPFR+A S P GD+K YQ+ PA A
Sbjct: 186 IRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLA 245
Query: 332 LVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMI 390
+ D SEGAD ++VKP YLD++R + LPI AY VSGEY+M+ A ++
Sbjct: 246 RRALERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVV 305
Query: 391 DEQRVMMESLMCLRRAGADIILTYFALQAARCL 423
D + + ES RAGA +I+TY A + L
Sbjct: 306 DLKTIAFESHQGFLRAGARLIITYLAPEFLDWL 338
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 5e-08
Identities = 54/369 (14%), Positives = 102/369 (27%), Gaps = 104/369 (28%)
Query: 34 FNCVKTKT-VTTRRLVVTASKSHDGTTK------KLGISDAECEA--AVVAGNIPEAPPV 84
+C K +TTR VT S TT + ++ E ++ P+ P
Sbjct: 264 LSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP- 319
Query: 85 PPKPAAPAGTPVVPSL---PLSRRPRR---------NRKSPAMRASFQETNLSPANF--V 130
P S+ + ++ + + +S L PA + +
Sbjct: 320 ---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN--VLEPAEYRKM 374
Query: 131 Y-PLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTG 189
+ L + I L W + +V V V K S
Sbjct: 375 FDRLSVF--PPSAHI--PTILLSLIWFDVIKSDV---MVV----VNKLHK-----YS--- 415
Query: 190 DEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLC 249
L++ + + I + + N+ +H+
Sbjct: 416 ---------------LVEKQPKESTISI-----------PSIYLELKVKLENEYALHRSI 449
Query: 250 KQAVSQARA--GADVVSPSDMMDG----RVG----AIRAALDAEGFQHV----SIMSYTA 295
+ + D++ P D +G I F+ V +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYL--DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 296 KYASSFYGPFREALDSNPRFGDKKTY----QMNPANYREALVEAQADESEGADILLVKPG 351
++ S+ + L++ K Y N Y E LV A D + L+
Sbjct: 508 RHDSTAWNASGSILNT---LQQLKFYKPYICDNDPKY-ERLVNAILDFLPKIEENLICS- 562
Query: 352 LPYLDVIRL 360
Y D++R+
Sbjct: 563 -KYTDLLRI 570
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 3e-05
Identities = 36/239 (15%), Positives = 75/239 (31%), Gaps = 77/239 (32%)
Query: 198 LVPRTIWL----LKDRY--------------------PDLVI----YTDVALDPYSSDGH 229
LVP + L++++ +LV Y ++P
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 230 DGIVR------EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGA-IRAALDA 282
D ++ E+ + ++ +H L A ++ +D + I+ + A
Sbjct: 81 DQVLNLCLTEFENCYLEGND-IHALA----------AKLLQENDTTLVKTKELIKNYITA 129
Query: 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPR----FGDKKTYQMNPANY----RE---- 330
+ ++ + K S+ FR + N + FG Q N +Y R+
Sbjct: 130 ---RIMAKRPFDKKSNSAL---FRAVGEGNAQLVAIFGG----QGNTDDYFEELRDLYQT 179
Query: 331 ------ALVEAQAD--ESEGADILLVKPGLPY-LDVIRLLRDKYPLPIAAYQVSGEYSM 380
L++ A+ L + L+++ L + P Y +S S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Score = 40.0 bits (93), Expect = 0.002
Identities = 55/329 (16%), Positives = 91/329 (27%), Gaps = 152/329 (46%)
Query: 23 YVGLR-----PSVTLRFNCVK-----TKTVTTRRLVVTASKSHDGTTKKLGISDAECEAA 72
++G+R P+ +L + ++ + V + L ++ ++ + +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS------------NLTQEQVQDY 352
Query: 73 VVAGN--IPEAPPV---------------PP-----------KPAAPAGTPVVPSLPLSR 104
V N +P V PP K AP+G L SR
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG------LDQSR 406
Query: 105 RPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVA 164
P RK F L P+ + P + H
Sbjct: 407 IPFSERK-LKFSNRF----L------------------PVAS-P--F-----H------- 428
Query: 165 KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD-P 223
S LVP + + KD + V + + P
Sbjct: 429 ---------------------SH-----L----LVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 224 -YSS-DGHDGIVREDGVIMNDETVHQLCKQAV-----SQARA------GADVVSP----- 265
Y + DG D +R +++ V + + V +Q +A G S
Sbjct: 459 VYDTFDGSD--LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
Query: 266 SDMMDGR-VGAIRA-ALDAE-----GFQH 287
DG V I A LD GF+
Sbjct: 517 HRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 37.3 bits (86), Expect = 0.010
Identities = 37/206 (17%), Positives = 64/206 (31%), Gaps = 74/206 (35%)
Query: 189 GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQL 248
G + Y + + +W D + D Y D IV + V + T+H
Sbjct: 1632 GMDLYKTSKAA-QDVWNRADNH---------FKDTYGFSILD-IVINNPVNL---TIHFG 1677
Query: 249 CKQAVSQA-RAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307
++ + R + ++DG++ + + E +H + SYT F +
Sbjct: 1678 GEK--GKRIRENYSAMIFETIVDGKLKTEK--IFKEINEHST--SYT------FRSE-KG 1724
Query: 308 ALDSNPRFGDKKTY--QMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY 365
L T Q PA + L++ L+ K
Sbjct: 1725 LLS--------ATQFTQ--PA------------------LTLME-----KAAFEDLKSKG 1751
Query: 366 PLPIAAYQV---S-GEYSMIKAGGAL 387
+P A S GEY+ AL
Sbjct: 1752 LIPADAT-FAGHSLGEYA------AL 1770
Score = 33.9 bits (77), Expect = 0.11
Identities = 41/222 (18%), Positives = 68/222 (30%), Gaps = 72/222 (32%)
Query: 110 RKSPAMRA-------SFQET-NLSPANFV--YP--LFIHE-GEEDTPIGA--MPGCYRLG 154
+ S A + F++T S + V P L IH GE+ I +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE-- 1694
Query: 155 WRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRT------------ 202
D + + +F ++ + S T ++ GL+ T
Sbjct: 1695 ----------TIVDGKLKTEKIFKEINEHSTSYTF---RSEKGLLSATQFTQPALTLMEK 1741
Query: 203 -IW-LLKDR--YPDLVI--------YTDVALDPYSSDGHDGIVR-EDGVIMNDETVHQ-- 247
+ LK + P Y AL +S ++ E V E V
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYA--AL---ASLA--DVMSIESLV----EVVFYRG 1790
Query: 248 -LCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288
+ AV + G S M+ G + A+ E Q+V
Sbjct: 1791 MTMQVAVPRDELGR---SNYGMIAINPGRVAASFSQEALQYV 1829
Score = 29.6 bits (66), Expect = 2.8
Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 73/209 (34%)
Query: 127 ANFVYPLFIH-----EGEEDTP---------IGAMPG------------CYRLGWRHGLV 160
A V+ ++ E +TP I + P LG+ G +
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 161 QEVAKARDVGVNSVVLFPKVPDAL---KSPTGDEAYNDNGLVPRTIWLL-------KDRY 210
+ K +V A+ ++ + + + V + I +L + Y
Sbjct: 264 RSYLKGATGHSQGLVT------AVAIAETDSWESFFV---SVRKAITVLFFIGVRCYEAY 314
Query: 211 PDLVIYTDVALDPYSSDGHDGI------VREDGVIMNDETVHQLCKQA---VSQARA--- 258
P+ + + D S + ++G+ + + E V + + +
Sbjct: 315 PNTSLPPSILED--SLENNEGVPSPMLSIS--N--LTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 259 ----GAD--VVS--PSDMMDGRVGAIRAA 279
GA VVS P + G +R A
Sbjct: 369 SLVNGAKNLVVSGPPQSLY-GLNLTLRKA 396
Score = 29.2 bits (65), Expect = 3.4
Identities = 31/278 (11%), Positives = 64/278 (23%), Gaps = 101/278 (36%)
Query: 46 RLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRR 105
+ V + +H G S + +V N P + +R
Sbjct: 1643 QDVWNRADNH--FKDTYGFSILD----IVINN--------PVNLT-----IHFGGEKGKR 1683
Query: 106 PRRN-----RKSPAMRASFQETNLSPANFVYPLFIHEGEED----T----PIGAM----P 148
R N ++ E N + E+ T P A+
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP--ALTLMEK 1741
Query: 149 GCYRLGWRHGLVQE---------------VAKARDVGVNSVVLFPKVPDALKSPTGDEAY 193
+ GL+ + A V S+ ++
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLA---DVMSI------ESLVE-------- 1784
Query: 194 NDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI-VREDGVI--MNDETVHQLCK 250
++ R + + V D + I + V + E + + +
Sbjct: 1785 -----------VVFYR--GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288
+ + +V + E Q+V
Sbjct: 1832 RV---GKRTGWLVEI------------VNYNVENQQYV 1854
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase,
transferase; HET: RIB ADP; 1.98A {Mycobacterium
tuberculosis} PDB: 3go7_A*
Length = 310
Score = 32.2 bits (74), Expect = 0.31
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 11/40 (27%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
QAV+ ARAGA V G G +RA L A
Sbjct: 62 QAVAAARAGAQVQ-----FSGAFGDDPAAAQLRAHLRANA 96
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site,
structura genomics, PSI-2, protein structu initiative;
HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Length = 343
Score = 31.8 bits (73), Expect = 0.42
Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 11/40 (27%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
A + R G + G VG I L G
Sbjct: 72 AAYAVHRMGGRAS-----LWGAVGDDETGTRILRDLSESG 106
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose
metabolic process,ATP ribokinase, PFKB
family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A
{Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Length = 299
Score = 31.7 bits (73), Expect = 0.43
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 11/40 (27%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
QA+ +R G + + G IR + E
Sbjct: 45 QAIILSRCGIETR-----LIAATGNDSNGAWIRQQIKNEP 79
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc
initiative, PSI, joint center for structural genomics,
TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Length = 311
Score = 31.3 bits (72), Expect = 0.48
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 10/40 (25%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
QAV+ A+ G +G + + G
Sbjct: 57 QAVTVAKIGEKGCR----FVTCIGNDDYSDLLIENYEKLG 92
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding,
transferase; HET: RIB ADP; 1.84A {Escherichia coli}
SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Length = 309
Score = 31.3 bits (72), Expect = 0.61
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 11/40 (27%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
QAV+ R+GA++ G +R L +
Sbjct: 47 QAVAAGRSGANI-----AFIACTGDDSIGESVRQQLATDN 81
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Length = 304
Score = 30.9 bits (71), Expect = 0.74
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 11/40 (27%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
QA++ AR AD ++G I
Sbjct: 46 QAIATARMQADT-----TFITKIGTDGVADFILEDFKVAH 80
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component
system, gene regulation, transcription factor, KDP
potassium transport system; 2.00A {Escherichia coli}
SCOP: c.23.1.1 PDB: 1zh4_A
Length = 121
Score = 29.7 bits (68), Expect = 0.77
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 329 REALVEAQADESEGADILLVKPGLPYLD---VIRLLRDKYPLPI 369
+ L+EA + D++++ GLP D IR LR +P+
Sbjct: 35 QRGLLEA---ATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPV 75
>2fv7_A Ribokinase; structural genomics, structural genomics consort
transferase; HET: ADP; 2.10A {Homo sapiens} SCOP:
c.72.1.1
Length = 331
Score = 30.6 bits (70), Expect = 0.85
Identities = 10/40 (25%), Positives = 11/40 (27%), Gaps = 11/40 (27%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
Q V AR GA M +VG L
Sbjct: 67 QCVQAARLGAMT-----SMVCKVGKDSFGNDYIENLKQND 101
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics,
NPPSFA, national project on P structural and functional
analyses; 2.20A {Pyrococcus horikoshii}
Length = 228
Score = 30.2 bits (67), Expect = 1.2
Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 27/194 (13%)
Query: 194 NDNGLVPRTIWLLKDRYPDL-VIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQA 252
D ++ +++ +P+L V+ + P + E ++ + A
Sbjct: 18 EDKEILNLHGRIIESAFPELKVVSRCIEDQPKGIYNEETE---------REAEPKIIRLA 68
Query: 253 VSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG--------- 303
R G D + S D V +R L S +S A G
Sbjct: 69 KEFEREGVDAIIISCAADPAVEKVRKLLSIPVIGAGSSVSALALAYGRRVGVLNLTEETP 128
Query: 304 -PFREALDSNPRFGDKKTY-----QMNPANYREALVEA-QADESEGAD-ILLVKPGLPYL 355
R L +N D + + R ++ A + + +G + I L G+ +
Sbjct: 129 KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMSTI 188
Query: 356 DVIRLLRDKYPLPI 369
+ +L ++ +P+
Sbjct: 189 GIAPVLEEEVGIPV 202
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 30.3 bits (69), Expect = 1.4
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 80 EAPPVPPKPAAPAGTPVVPSLPLSRR 105
EAP + VP L +S R
Sbjct: 430 EAPEREHRETTAHDGRPVP-LVVSAR 454
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 30.3 bits (69), Expect = 1.4
Identities = 8/80 (10%), Positives = 17/80 (21%)
Query: 48 VVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPR 107
V +GT +G + +A + V +
Sbjct: 55 KVLEILVPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAP 114
Query: 108 RNRKSPAMRASFQETNLSPA 127
+ A + P+
Sbjct: 115 NAPAAEAEAGPNRRVIAMPS 134
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding,
nucleoside B transferase; HET: MZR ADP; 1.55A
{Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A*
3b1r_A*
Length = 326
Score = 29.9 bits (68), Expect = 1.7
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 10/39 (25%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA-----IRAALDAEG 284
A + G D MM G +GA +DA G
Sbjct: 53 IAYALNLLGGDAR----MM-GTLGAVDAQPYLDRMDALG 86
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199,
PSI-2, PR structure initiative 2; 1.86A {Agrobacterium
tumefaciens str}
Length = 317
Score = 29.5 bits (67), Expect = 2.2
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 11/40 (27%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVG------AIRAALDAEG 284
A + +R G +V + G + A G
Sbjct: 45 AARNLSRLGFEV-----RIIAPRGGDVTGEVVAEAARQAG 79
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer
membrane; HET: UNL; 2.30A {Escherichia coli}
Length = 446
Score = 29.6 bits (67), Expect = 2.3
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 72 AVVAGNIPEAPPVPPKPAAPAGTPVVPS-LP---LSRRP 106
++ G+ + P + + +P+ L L +RP
Sbjct: 226 QLLLGSYGKLPQAQTVNSDSLQSVKLPAGLSSQILLQRP 264
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 29.6 bits (66), Expect = 2.6
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 65 SDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLS 103
+ A AA AP A A + P+
Sbjct: 108 APAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVK 146
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 29.2 bits (66), Expect = 3.3
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 78 IPEAPPVPPKPAAPAGTPVVPSLPLSRR 105
I E P +P + VP L LS R
Sbjct: 449 IVEEAPEADEPEPAPDSGPVP-LVLSGR 475
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical
bundle, structural genomics, PSI, protein structure
initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Length = 111
Score = 27.7 bits (62), Expect = 3.3
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 317 DKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY 365
D+ + NP ++ E + E A E EG + + +++ LR+ +
Sbjct: 19 DEDCFMQNPEDWDEKVAEWLARELEGIQKM----TEEHWKLVKYLREYW 63
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo
sapiens}
Length = 252
Score = 28.5 bits (63), Expect = 3.5
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTI--WLLKDRYPDLV 214
H V+ + D ++LF K AY + + I ++ ++ +
Sbjct: 58 HTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICP 117
Query: 215 IYTDVALDPYSSDGH 229
T+ D
Sbjct: 118 HMTEDNKDLIQGKDL 132
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for
infectious disease, ssgcid; 2.90A {Burkholderia
pseudomallei 1655}
Length = 298
Score = 28.4 bits (64), Expect = 4.5
Identities = 27/120 (22%), Positives = 42/120 (35%), Gaps = 31/120 (25%)
Query: 257 RAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316
R G + V +M V I+AA+DA + IM+ T D+ G
Sbjct: 129 RPGKECVPAGEM----VDRIKAAVDARTDETFVIMART---------------DAAAAEG 169
Query: 317 DKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSG 376
A+ A A GAD++ + + LD R ++ +PI A
Sbjct: 170 -----------IDAAIERAIAYVEAGADMIFPE-AMKTLDDYRRFKEAVKVPILANLTEF 217
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 28.1 bits (62), Expect = 4.7
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 105 RPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTP--IGAM--PGCYRLGWRHGLV 160
+P + ++ +S +E ++ ++ + +G PGC R +
Sbjct: 2 KPPSSIQTSEFDSSDEEPIEDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNVQ 61
Query: 161 QEVAKARDVGVNSVV--LFPKVPDALKSPTGDEAYNDNGL 198
++ + + G+ + + P + Y G+
Sbjct: 62 KDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGI 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 5.0
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 7/29 (24%)
Query: 296 KYASSF--YGPFREALDSNPRFGDKKTYQ 322
K +S Y DS P K T +
Sbjct: 24 KLQASLKLYAD-----DSAPALAIKATME 47
Score = 27.2 bits (59), Expect = 7.4
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 1 MASSV-FHAPCGAP--SIK-QLE 19
+ +S+ +A AP +IK +E
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor
complex, isocitrate lyase superfamily; HET: ICT; 1.60A
{Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A
1o5q_A
Length = 295
Score = 28.0 bits (63), Expect = 5.6
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 31/120 (25%)
Query: 257 RAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316
R +VS +M V IRAA+DA+ IM+ T D+ G
Sbjct: 125 RPNKAIVSKEEM----VDRIRAAVDAKTDPDFVIMART---------------DALAVEG 165
Query: 317 DKKTYQMNPANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSG 376
A+ AQA GA++L + + L + R D +PI A
Sbjct: 166 -----------LDAAIERAQAYVEAGAEMLFPE-AITELAMYRQFADAVQVPILANITEF 213
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 28.0 bits (63), Expect = 5.9
Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 17/104 (16%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEGFQHVSIMSYTAKYASSFYGP 304
+A +R G + R+G I E + + +S
Sbjct: 49 EATIISRLGHRTA-----LMSRIGKDAAGQFILDHCRKENI-DIQSLKQDVSIDTSINVG 102
Query: 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLV 348
D F N + ++ + + A +L +
Sbjct: 103 LVTE-DGERTFV----TNRNGSLWKLNIDDVDFARFSQAKLLSL 141
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 27.6 bits (62), Expect = 6.8
Identities = 5/44 (11%), Positives = 10/44 (22%), Gaps = 7/44 (15%)
Query: 175 VLFPKVPD-------ALKSPTGDEAYNDNGLVPRTIWLLKDRYP 211
+L+ + L E D + R +
Sbjct: 154 ILYKNIFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIFARSIG 197
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 27.7 bits (61), Expect = 7.1
Identities = 12/90 (13%), Positives = 28/90 (31%)
Query: 79 PEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEG 138
P + P + P+ + + ++R R ++A F+E P +
Sbjct: 32 PLSKPFSGVVSPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQRPPNQKPQLSDVLPD 91
Query: 139 EEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168
+ P P + + + R+
Sbjct: 92 DFQAPEPGTPEYNDIINQFLPKKGPPPPRE 121
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase,
hyperthermophIle, ribokinase ribokinase fold; 1.70A
{Methanococcus jannaschii} PDB: 2c49_A
Length = 302
Score = 27.6 bits (62), Expect = 8.7
Identities = 6/40 (15%), Positives = 10/40 (25%), Gaps = 11/40 (27%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
AV + G + ++ VG L
Sbjct: 48 TAVGIKKLGVNSE----LL-SCVGYDFKNSGYERYLKNLD 82
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 27.9 bits (63), Expect = 9.0
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 80 EAPPVPPKPAAPAGTPVVPSLPLSRR 105
PP PA A P + L S R
Sbjct: 408 PNTQPPPAPAPHATLPRL--LRASGR 431
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics
consortium, TBSGC; 1.50A {Mycobacterium tuberculosis}
PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Length = 334
Score = 27.3 bits (61), Expect = 9.1
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 11/46 (23%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVGA----IRAALDAEG--FQHVSI 290
A + G +V ++ G GA R L A G HV I
Sbjct: 63 MAFAIGVLGGEVA----LV-GAAGADFADYRDWLKARGVNCDHVLI 103
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure
initiative, modified lysin, structural genomics; HET:
BGC; 2.45A {Clostridium perfringens}
Length = 328
Score = 27.5 bits (62), Expect = 9.2
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 21/107 (19%)
Query: 251 QAVSQARAGADVVSPSDMMDGRVG------AIRAALDAEGFQHVSIMSYTAKYASSFYGP 304
A + AR G + +G +I G+ H+ ++ Y
Sbjct: 48 IAENMARVGVNT-----NFMSILGNDEHGKSIVEHSKKIGY-HMDDSMVIEGGSTPTYLA 101
Query: 305 FREALDSNPRFGDKKTYQMNPANYR---EALVEAQADESEGADILLV 348
LD N G+ + + + ++++ + E A+ ++
Sbjct: 102 I---LDEN---GEMVSAIADMKSIGAMNTDFIDSKREIFENAEYTVL 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0864 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,727,345
Number of extensions: 425673
Number of successful extensions: 1481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1430
Number of HSP's successfully gapped: 72
Length of query: 428
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 332
Effective length of database: 4,021,377
Effective search space: 1335097164
Effective search space used: 1335097164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)