BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014238
         (428 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus
           musculus GN=Gpaa1 PE=1 SV=3
          Length = 621

 Score = 82.4 bits (202), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 162/389 (41%), Gaps = 82/389 (21%)

Query: 10  RKRPIVRLAVLLLSHSVLVSVICCTAGV--FGLLLLPVLAKNTYISENALMPGSASSMLS 67
           R+R + R+ + L   +  + V+   AG+  F  L  P L + TY+SENA+     S+M+ 
Sbjct: 9   RRRALARIVLRL---NTPLCVLSYVAGIAWFLALAFPPLTQRTYMSENAM----GSTMVE 61

Query: 68  NQEV--SEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPL 125
            Q V    A    ++       P GA   +   + + M ++G +V    F  +L      
Sbjct: 62  EQFVGGDRARSFARDFAAHRKKP-GALPVAW--LERSMRSVGLEVYTQSFSRKL------ 112

Query: 126 HFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGI 185
                PD    + +    + G N  GI+RAPR    E++VL  P          + ++G+
Sbjct: 113 ---PFPD----ETHERYMVSGTNVYGILRAPRSASTESLVLTVPCGP---DATNSQAVGL 162

Query: 186 AYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGN 245
             ++ +      + AKDII+LV D    +     AWL  YH                +  
Sbjct: 163 LLALAAHFRGQIYWAKDIIFLVTDH---DLLGTEAWLEAYH---------------DINV 204

Query: 246 NNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAV 305
              +S    G  R+G + AA+ L ++  ++   +L +  E  NGQ+PNLDL+N+      
Sbjct: 205 TGIQSSPLQG--RAGAIQAAVALELS--SDVVTSLDVTVEGLNGQLPNLDLLNLFQTFC- 259

Query: 306 HRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNP-DWKLGISAADYVEGAATLA 364
            + GL   ++                     GK    L P DW    S    ++G  TL 
Sbjct: 260 QKGGLLCTLQ---------------------GK----LQPQDWT---SLEGPLQGLQTLL 291

Query: 365 SSLYHQALGVPTGPHGAFRDYQVDAITLE 393
             +  QA G P GPHG F  Y V+A+TL 
Sbjct: 292 LMVLRQASGRPHGPHGLFLRYGVEALTLR 320


>sp|O43292|GPAA1_HUMAN Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo
           sapiens GN=GPAA1 PE=1 SV=3
          Length = 621

 Score = 75.1 bits (183), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 161/388 (41%), Gaps = 80/388 (20%)

Query: 10  RKRPIVRLAVLLLSHSVLVSVICCTAGV--FGLLLLPVLAKNTYISENALMPGSASSMLS 67
           R+R + RL + L   +  + V+   AG+  F  L+ P L + TY+SENA+     S+M+ 
Sbjct: 9   RRRALARLVLRL---NAPLCVLSYVAGIAWFLALVFPPLTQRTYMSENAM----GSTMVE 61

Query: 68  NQEVS-EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLH 126
            Q    +  +        H    GA   +   + + M ++G +V    F  +L    P  
Sbjct: 62  EQFAGGDRARAFARDFAAHRKKSGALPVAW--LERTMRSVGLEVYTQSFSRKL----PF- 114

Query: 127 FFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIA 186
               PD    + +    + G N  GI+RAPR    E++VL  P  +     +    L   
Sbjct: 115 ----PD----ETHERYMVSGTNVYGILRAPRAASTESLVLTVPCGSDSTNSQAVGLLLAL 166

Query: 187 YSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNN 246
            + F    ++ W AKDI++LV +    +     AWL  YH                V   
Sbjct: 167 AAHFR--GQIYW-AKDIVFLVTEH---DLLGTEAWLEAYH---------------DVNVT 205

Query: 247 NFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVH 306
             +S    G  R+G + AA+ L ++  ++   +L +  E  NGQ+PNLDL+N+       
Sbjct: 206 GMQSSPLQG--RAGAIQAAVALELS--SDVVTSLDVAVEGLNGQLPNLDLLNLFQTFC-Q 260

Query: 307 RQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNP-DWKLGISAADYVEGAATLAS 365
           + GL   ++                     GK    L P DW    S    ++G  TL  
Sbjct: 261 KGGLLCTLQ---------------------GK----LQPEDWT---SLDGPLQGLQTLLL 292

Query: 366 SLYHQALGVPTGPHGAFRDYQVDAITLE 393
            +  QA G P G HG F  Y+V+A+TL 
Sbjct: 293 MVLRQASGRPHGSHGLFLRYRVEALTLR 320


>sp|Q9US48|GAA1_SCHPO GPI transamidase component gaa1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=gaa1 PE=3 SV=1
          Length = 581

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 150/401 (37%), Gaps = 93/401 (23%)

Query: 15  VRLAVLLLSHSVLVSVICCTAGVFGLLLLP--VLAKNTYISENALMPGSASSMLSNQEVS 72
           +R+   L  H   + +     G+  + +LP   +    ++SE+AL+PG            
Sbjct: 9   IRVFPFLQRHLFFLQLSLTLIGLSWIFILPRNEIIDRLHVSESALLPG------------ 56

Query: 73  EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPD 132
                  ++N    N    T  S    A   S+L A V  +  +  L Q      F+   
Sbjct: 57  -------QVNTYFENRYSKTVSSSLTAANTWSHLDASVGTNTMYDDLEQ-----IFTAMG 104

Query: 133 SGVMQENST-----RSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAY 187
               ++N +         G N +  +RAPRGD  E+++L  P+    G   E   + +A 
Sbjct: 105 LPTQKQNYSINIPGSEFNGSNFITTLRAPRGDATESLLLCVPWKDHIGQYNEA-GVALAI 163

Query: 188 SVFSLLTRVTWLAKDIIWLVADSQ-YGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNN 246
           S+       +  +KDII ++ D   YG  + + ++  D  TP                  
Sbjct: 164 SLLKYFQGWSLWSKDIILVIFDDPVYGPSSFLTSYF-DQTTP------------------ 204

Query: 247 NFESKISYGIR--RSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVH--Y 302
                ISY     RSG++ A L L +     N D L +  +A+NGQ+PNLDL N +   +
Sbjct: 205 ----YISYTPLKIRSGSIQAGLSLELVTTENNSDVLEVLYQATNGQLPNLDLFNTISRIF 260

Query: 303 LAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAAT 362
           +      LR++   FH                                 S + Y     +
Sbjct: 261 MQHFNYPLRLQGYDFH-------------------------------ANSGSSYTSRLKS 289

Query: 363 LASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLR--ISFD 401
           L   +  QA+   T  H  F  Y++D +TL   ++   SFD
Sbjct: 290 LWMGMLTQAVSNVTSAHALFPQYRIDMLTLRMKVKDPFSFD 330


>sp|P39012|GAA1_YEAST GPI transamidase component GAA1 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=GAA1 PE=1 SV=1
          Length = 614

 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 141/318 (44%), Gaps = 79/318 (24%)

Query: 8   KKRKRPIVRLAVL--LLSHSVLVSVICCTAGVFGLLLLPV--LAKNTYISENALMPGSAS 63
           +K  R IV + ++  +++   ++S++C   G   + +LP+    + TYISENALMP  A 
Sbjct: 5   EKLHRRIVDMGLVPRIIALLPVISMLCALFGFISIAILPMDGQYRRTYISENALMPSQAY 64

Query: 64  SMLSNQEVSEANKL------IKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHP 117
           S       SE N L      IKE+ N+ S       E + ++  ++   G +        
Sbjct: 65  SYFRE---SEWNILRGYRSQIKEMVNMTS------MERNNLMGSWLQEFGTKT------- 108

Query: 118 QLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTP-YNAVKGG 176
                             + EN     YG    G++ APRGDG EA+VL  P +N+    
Sbjct: 109 -----------------AIYENEQ---YGETLYGVMHAPRGDGTEAMVLAVPWFNSDDEF 148

Query: 177 VRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSL 236
                +LG++ + F   +R    +K+II + +++     A + +W+  YHT    +LD  
Sbjct: 149 NIGGAALGVSLARF--FSRWPVWSKNIIVVFSEN---PRAALRSWVEAYHT----SLD-- 197

Query: 237 NTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDL 296
                                  G++ AA+VL  +   +  + + I  +  NG++PNLDL
Sbjct: 198 --------------------LTGGSIEAAVVLDYSSTEDFFEYVEISYDGLNGELPNLDL 237

Query: 297 INIVHYLAVHRQGLRVKV 314
           +NI   +  H +G++V +
Sbjct: 238 VNIAISITEH-EGMKVSL 254


>sp|Q9X6Y1|RPOB_AQUPY DNA-directed RNA polymerase subunit beta OS=Aquifex pyrophilus
           GN=rpoB PE=3 SV=1
          Length = 1469

 Score = 38.5 bits (88), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 253 SYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRV 312
            YG  ++GT     +L   + N  E  +  Y E     +  +DLINI+ YL   R G RV
Sbjct: 462 DYGEYKAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHG-RV 520

Query: 313 KVEQFHWLLNSKWVKSLGEVFESLGKM 339
           K +    L N + V+S+GE+ E+  ++
Sbjct: 521 KKDDIAHLGNRR-VRSVGELLENQARL 546


>sp|Q9CGG8|LDH3_LACLA L-lactate dehydrogenase 3 OS=Lactococcus lactis subsp. lactis
           (strain IL1403) GN=ldhX PE=3 SV=1
          Length = 323

 Score = 34.7 bits (78), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 217 PVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESK--ISYGIRRS 259
           P+  WL+ Y  P F   D ++ E   VG + F  K   SYGI  S
Sbjct: 199 PLTTWLKKYPNPEFPTFDEIDQEIREVGLDIFMQKGNTSYGIAAS 243


>sp|O67762|RPOB_AQUAE DNA-directed RNA polymerase subunit beta OS=Aquifex aeolicus
           (strain VF5) GN=rpoB PE=3 SV=1
          Length = 1468

 Score = 34.3 bits (77), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 254 YGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVK 313
           YG  ++GT     +L   +    E  +  Y E     +  +DL+NI+ YL   R G RVK
Sbjct: 463 YGEYKAGTRVTKDLLKELFKQYKEIKVKDYTEDEARFILPIDLVNILKYLIDLRHG-RVK 521

Query: 314 VEQFHWLLNSKWVKSLGEVFESLGKM 339
            +    L N + V+S+GE+ E+  ++
Sbjct: 522 KDDIAHLGNRR-VRSVGELLENQARL 546


>sp|O93640|EF2_METTE Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1
          Length = 730

 Score = 34.3 bits (77), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)

Query: 288 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 335
            G MP  +         V RQ LR  V       +   L+N   V S      LG+V + 
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDH 174

Query: 336 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 375
           + K++K +NP+     WK+     D   G     S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214


>sp|A7I4X4|EF2_METB6 Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA
           PE=3 SV=1
          Length = 731

 Score = 34.3 bits (77), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 32/122 (26%)

Query: 282 IYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------L 329
           +  +A  G MP  +         V RQ L+ +V       +   L+N   V        L
Sbjct: 117 VLVDAVEGTMPQTE--------TVLRQALKEQVRPVLFINKVDRLVNELKVDETEMQIRL 168

Query: 330 GEVFESLGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVPTGPHG--AF 382
           G+V + + K++K +N D     WKL     D  +G     S+LY+ A+ VP    G  +F
Sbjct: 169 GKVIDKVNKLIKGMNEDLYNNGWKL-----DASKGTVAFGSALYNWAVSVPYMKKGGVSF 223

Query: 383 RD 384
           +D
Sbjct: 224 KD 225


>sp|Q8PUR7|EF2_METMA Elongation factor 2 OS=Methanosarcina mazei (strain ATCC BAA-159 /
           DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=fusA PE=3
           SV=1
          Length = 730

 Score = 34.3 bits (77), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)

Query: 288 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 335
            G MP  +         V RQ LR  V       +   L+N   V S      LG+V + 
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDH 174

Query: 336 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 375
           + K++K +NP+     WK+     D   G     S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214


>sp|Q8TRC3|EF2_METAC Elongation factor 2 OS=Methanosarcina acetivorans (strain ATCC
           35395 / DSM 2834 / JCM 12185 / C2A) GN=fusA PE=3 SV=1
          Length = 730

 Score = 33.9 bits (76), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)

Query: 288 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 335
            G MP  +         V RQ LR  V       +   L+N   V S      LG+V + 
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQIRLGKVIDH 174

Query: 336 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 375
           + K++K +NP+     WK+     D   G     S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214


>sp|Q3AIK3|APT_SYNSC Adenine phosphoribosyltransferase OS=Synechococcus sp. (strain
           CC9605) GN=apt PE=3 SV=1
          Length = 172

 Score = 33.5 bits (75), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 327 KSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALG-VPTGPHGAFRDY 385
           +++ EV    G++   + PD  +GI +  ++ G A LAS    + LG VP    G     
Sbjct: 31  EAMAEVISQFGRICDQVKPDLIVGIESRGFIFG-APLASD---RRLGFVPVRKPGKLPG- 85

Query: 386 QVDAITLEFSLRISFDRLDRRNDFLLHGGRI 416
             + + L+++L    DRL+ + D L H  R+
Sbjct: 86  --EVVGLDYALEYGTDRLEIQADALEHSPRV 114


>sp|Q75EW4|DHYS_ASHGO Deoxyhypusine synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS
           109.51 / FGSC 9923 / NRRL Y-1056) GN=DYS1 PE=3 SV=1
          Length = 382

 Score = 33.1 bits (74), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 161 KEAIVLVTPYNAVKGGVRETLSLGIAYSVFS-LLTRVTWLAKDIIWLVADSQYGEYAPVA 219
           K  I L    N +  G+RETL   + +++ S ++T    + +DII  +A +  GE+    
Sbjct: 99  KSTIFLGYTSNLISSGLRETLRYLVQHNMVSAIVTTAGGVEEDIIKCLAPTYLGEFTLKG 158

Query: 220 AWLRDYHTPAFSNLDSLNTETC 241
           A LRD       NL   N   C
Sbjct: 159 AALRDKGMNRIGNLLVPNNNYC 180


>sp|O28385|EF2_ARCFU Elongation factor 2 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
           VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=fusA PE=3
           SV=1
          Length = 728

 Score = 32.7 bits (73), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 21/111 (18%)

Query: 278 DTLGIYAEASNGQMPNLDLI-------NIVHYLAVHRQGLRVK-VEQFHWLLNSKWVKSL 329
           D + +  +A  G MP  + +       N+   L V++    +K +E     +  + +K +
Sbjct: 112 DGVIVVVDAVEGVMPQTETVLRQALKENVKPVLFVNKVDRLIKELELTPQQMQERLIKVI 171

Query: 330 GEVFESLGKMVKTLNPD----WKLGISAADYVEGAATLASSLYHQALGVPT 376
            EV     K++K + PD    WK+     D   G+A   S+LY+ A+ VP+
Sbjct: 172 TEV----NKLIKAMRPDKYSEWKI-----DVANGSAAFGSALYNWAVSVPS 213


>sp|Q464Z3|EF2_METBF Elongation factor 2 OS=Methanosarcina barkeri (strain Fusaro / DSM
           804) GN=fusA PE=3 SV=1
          Length = 730

 Score = 32.7 bits (73), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 30/105 (28%)

Query: 288 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 335
            G MP  +         V RQ LR  V       +   L+N   V S      LG+V + 
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELKVDSQEMQIRLGKVIDH 174

Query: 336 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 375
           + K++K +NP+     W++     D   G     S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKYKEGWRV-----DAAAGTVAFGSALYNWAISVP 214


>sp|Q03SL6|TPIS_LACBA Triosephosphate isomerase OS=Lactobacillus brevis (strain ATCC 367
           / JCM 1170) GN=tpiA PE=3 SV=1
          Length = 252

 Score = 32.0 bits (71), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 272 YGNENEDTLGIYAEA--SNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSL 329
           Y NE +D +    +A   NG  P L              G R   E+ HW++N       
Sbjct: 101 YFNETDDVINRKVQAVFRNGMTPIL--------CCDETMGRRTAGEKIHWVVNQVSAALK 152

Query: 330 GEVFESLGKMVKTLNPDWKLG 350
           G   E   K+V    P W +G
Sbjct: 153 GVSAEDAAKIVVAYEPSWAIG 173


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,730,056
Number of Sequences: 539616
Number of extensions: 6651819
Number of successful extensions: 16390
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 16370
Number of HSP's gapped (non-prelim): 28
length of query: 428
length of database: 191,569,459
effective HSP length: 120
effective length of query: 308
effective length of database: 126,815,539
effective search space: 39059186012
effective search space used: 39059186012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)