Query 014238
Match_columns 428
No_of_seqs 136 out of 249
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3566 Glycosylphosphatidylin 100.0 2.4E-74 5.3E-79 594.7 27.6 337 8-423 7-346 (617)
2 PF04114 Gaa1: Gaa1-like, GPI 100.0 1.4E-58 2.9E-63 488.0 20.4 224 145-424 2-226 (504)
3 PRK10199 alkaline phosphatase 99.1 1.2E-08 2.5E-13 103.9 20.4 118 93-225 55-189 (346)
4 PF04389 Peptidase_M28: Peptid 98.4 1E-06 2.2E-11 80.6 8.1 65 162-226 1-75 (179)
5 KOG2194 Aminopeptidases of the 98.1 1.8E-05 3.9E-10 87.7 11.1 163 46-223 38-209 (834)
6 PRK06133 glutamate carboxypept 97.5 0.0017 3.8E-08 67.4 14.7 125 73-226 38-185 (410)
7 PRK08596 acetylornithine deace 97.5 0.0021 4.6E-08 67.0 14.0 125 73-224 14-165 (421)
8 TIGR01879 hydantase amidase, h 97.4 0.0015 3.2E-08 67.7 12.1 100 94-225 32-139 (401)
9 TIGR01892 AcOrn-deacetyl acety 97.3 0.0021 4.6E-08 64.9 11.9 104 94-226 19-145 (364)
10 TIGR01883 PepT-like peptidase 97.3 0.0025 5.4E-08 64.6 12.4 121 77-224 5-146 (361)
11 PRK09133 hypothetical protein; 97.3 0.0053 1.1E-07 65.0 14.8 127 73-226 38-191 (472)
12 PRK08588 succinyl-diaminopimel 97.2 0.0052 1.1E-07 62.7 13.2 120 74-225 4-148 (377)
13 PRK12890 allantoate amidohydro 97.1 0.0047 1E-07 64.1 12.2 100 93-224 38-145 (414)
14 PRK05111 acetylornithine deace 97.1 0.0095 2.1E-07 60.8 13.6 122 74-225 7-157 (383)
15 TIGR01882 peptidase-T peptidas 97.1 0.026 5.5E-07 58.8 16.9 99 94-223 34-187 (410)
16 PRK12893 allantoate amidohydro 97.0 0.01 2.3E-07 61.4 13.0 101 94-226 41-149 (412)
17 PRK09290 allantoate amidohydro 97.0 0.0084 1.8E-07 62.3 12.2 100 94-225 38-145 (413)
18 PRK07906 hypothetical protein; 97.0 0.0086 1.9E-07 62.4 12.3 105 93-225 25-154 (426)
19 PRK07522 acetylornithine deace 96.9 0.016 3.4E-07 59.3 13.7 123 74-226 6-151 (385)
20 PRK08652 acetylornithine deace 96.9 0.012 2.5E-07 59.2 12.3 115 74-225 4-133 (347)
21 TIGR01910 DapE-ArgE acetylorni 96.9 0.011 2.4E-07 60.3 12.1 109 93-226 21-154 (375)
22 PRK12892 allantoate amidohydro 96.9 0.0072 1.6E-07 62.5 10.7 99 94-225 40-146 (412)
23 PRK07473 carboxypeptidase; Pro 96.8 0.027 5.9E-07 58.0 14.3 125 75-226 14-161 (376)
24 PRK12891 allantoate amidohydro 96.7 0.014 3E-07 60.8 11.8 96 94-221 41-144 (414)
25 PF05450 Nicastrin: Nicastrin; 96.7 0.035 7.6E-07 54.0 13.6 122 164-304 3-136 (234)
26 PRK06446 hypothetical protein; 96.7 0.027 5.9E-07 59.0 13.7 121 75-226 5-151 (436)
27 TIGR01893 aa-his-dipept aminoa 96.7 0.017 3.8E-07 61.3 12.1 117 74-225 6-153 (477)
28 PRK07907 hypothetical protein; 96.7 0.036 7.7E-07 58.3 14.3 120 74-225 20-169 (449)
29 PRK13381 peptidase T; Provisio 96.6 0.021 4.6E-07 59.0 12.4 101 93-224 31-184 (404)
30 PRK08262 hypothetical protein; 96.6 0.035 7.7E-07 59.0 14.2 138 51-225 30-202 (486)
31 PRK13983 diaminopimelate amino 96.5 0.047 1E-06 55.9 13.9 129 74-225 7-166 (400)
32 PRK13013 succinyl-diaminopimel 96.5 0.053 1.2E-06 56.3 14.3 130 73-223 15-170 (427)
33 COG2234 Iap Predicted aminopep 96.5 0.014 3.1E-07 60.8 10.1 82 144-227 182-276 (435)
34 TIGR03176 AllC allantoate amid 96.5 0.024 5.2E-07 59.1 11.5 97 94-222 34-138 (406)
35 PRK13009 succinyl-diaminopimel 96.5 0.051 1.1E-06 55.3 13.6 118 75-225 5-148 (375)
36 PRK07338 hypothetical protein; 96.5 0.059 1.3E-06 55.5 14.1 117 94-226 41-178 (402)
37 PRK06837 acetylornithine deace 96.4 0.064 1.4E-06 56.1 14.2 136 76-223 24-184 (427)
38 PRK13590 putative bifunctional 96.4 0.026 5.7E-07 61.8 11.7 96 94-221 215-319 (591)
39 PRK06915 acetylornithine deace 96.4 0.07 1.5E-06 55.4 14.0 138 74-224 19-181 (422)
40 PRK04443 acetyl-lysine deacety 96.2 0.067 1.4E-06 54.2 12.9 115 74-226 8-137 (348)
41 PRK05469 peptidase T; Provisio 96.2 0.059 1.3E-06 55.9 12.7 99 93-223 32-185 (408)
42 PRK09104 hypothetical protein; 96.1 0.1 2.3E-06 55.1 14.1 104 94-226 44-177 (464)
43 PRK13799 unknown domain/N-carb 96.1 0.048 1E-06 59.8 11.5 97 94-222 215-320 (591)
44 PRK08201 hypothetical protein; 96.0 0.11 2.4E-06 54.7 13.5 103 94-226 41-169 (456)
45 TIGR01902 dapE-lys-deAc N-acet 96.0 0.056 1.2E-06 54.4 10.9 109 79-226 4-127 (336)
46 PRK07205 hypothetical protein; 95.9 0.12 2.6E-06 54.3 13.5 98 94-225 42-164 (444)
47 PRK00466 acetyl-lysine deacety 95.9 0.083 1.8E-06 53.4 11.7 111 73-225 11-136 (346)
48 PRK13004 peptidase; Reviewed 95.9 0.18 3.8E-06 52.2 14.2 116 74-224 17-158 (399)
49 COG0624 ArgE Acetylornithine d 95.8 0.15 3.3E-06 52.7 13.3 109 92-227 33-166 (409)
50 PRK08651 succinyl-diaminopimel 95.8 0.11 2.5E-06 53.2 12.1 128 74-226 8-160 (394)
51 PRK13007 succinyl-diaminopimel 95.7 0.13 2.9E-06 51.8 12.1 113 74-225 9-141 (352)
52 TIGR01880 Ac-peptdase-euk N-ac 95.7 0.23 5E-06 51.2 14.0 120 76-224 13-160 (400)
53 PLN02693 IAA-amino acid hydrol 95.5 0.21 4.5E-06 52.8 13.2 118 73-225 48-183 (437)
54 KOG2195 Transferrin receptor a 95.5 0.04 8.7E-07 61.4 8.0 83 144-228 336-424 (702)
55 PRK15026 aminoacyl-histidine d 95.2 0.72 1.6E-05 49.5 16.3 117 74-225 12-159 (485)
56 PRK07318 dipeptidase PepV; Rev 95.1 0.29 6.2E-06 51.9 12.9 97 94-225 47-166 (466)
57 TIGR01891 amidohydrolases amid 95.0 0.31 6.7E-06 49.6 12.4 115 77-224 4-136 (363)
58 TIGR03526 selenium_YgeY putati 95.0 0.48 1E-05 48.9 13.9 116 74-224 15-156 (395)
59 TIGR01246 dapE_proteo succinyl 94.7 0.47 1E-05 48.3 12.7 113 78-223 5-143 (370)
60 PRK08554 peptidase; Reviewed 94.6 0.65 1.4E-05 49.0 13.7 98 94-225 28-149 (438)
61 KOG2526 Predicted aminopeptida 94.4 0.14 2.9E-06 53.7 7.9 80 144-223 191-287 (555)
62 PRK07079 hypothetical protein; 94.1 0.9 2E-05 48.1 13.7 126 74-226 19-177 (469)
63 PLN02280 IAA-amino acid hydrol 93.8 1.1 2.3E-05 48.1 13.7 97 93-224 117-232 (478)
64 TIGR03320 ygeY M20/DapE family 93.8 1.2 2.6E-05 45.8 13.6 116 74-224 15-156 (395)
65 TIGR01886 dipeptidase dipeptid 93.2 1.1 2.5E-05 47.5 12.5 97 95-226 47-166 (466)
66 TIGR01887 dipeptidaselike dipe 92.3 2.3 4.9E-05 45.1 13.2 98 94-226 35-155 (447)
67 PF09940 DUF2172: Domain of un 91.8 0.99 2.1E-05 46.8 9.3 65 158-227 126-190 (386)
68 PRK06156 hypothetical protein; 91.6 6.1 0.00013 42.6 15.8 51 178-228 154-205 (520)
69 TIGR01900 dapE-gram_pos succin 91.5 1.5 3.3E-05 45.0 10.6 100 93-225 16-155 (373)
70 KOG3946 Glutaminyl cyclase [Po 90.6 2 4.4E-05 43.0 9.9 97 92-211 71-179 (338)
71 COG1363 FrvX Cellulase M and r 89.7 17 0.00037 37.7 16.2 102 177-318 179-292 (355)
72 COG4187 RocB Arginine degradat 87.9 9 0.0002 40.8 12.7 136 72-227 8-189 (553)
73 PRK08737 acetylornithine deace 85.4 11 0.00025 38.5 12.1 112 74-226 8-145 (364)
74 PF01546 Peptidase_M20: Peptid 85.3 4 8.6E-05 36.7 7.8 51 174-224 32-84 (189)
75 PF05343 Peptidase_M42: M42 gl 83.6 5.5 0.00012 40.0 8.6 101 177-315 133-243 (292)
76 KOG2275 Aminoacylase ACY1 and 80.4 31 0.00067 36.4 12.7 104 91-223 45-176 (420)
77 PRK09961 exoaminopeptidase; Pr 76.7 24 0.00053 36.2 10.8 102 177-316 165-277 (344)
78 TIGR03107 glu_aminopep glutamy 72.1 28 0.00061 35.9 9.9 100 177-314 177-284 (350)
79 PRK09864 putative peptidase; P 71.8 29 0.00062 36.0 9.9 100 177-317 174-286 (356)
80 COG1473 AbgB Metal-dependent a 70.9 58 0.0013 34.2 12.1 118 74-224 14-149 (392)
81 TIGR03106 trio_M42_hydro hydro 53.5 54 0.0012 33.7 7.9 66 74-173 5-70 (343)
82 PHA02673 ORF109 EEV glycoprote 45.3 18 0.0004 33.2 2.7 38 7-45 21-58 (161)
83 TIGR03106 trio_M42_hydro hydro 43.8 1.6E+02 0.0036 30.2 9.7 103 177-318 182-289 (343)
84 TIGR01006 polys_exp_MPA1 polys 40.6 2.6E+02 0.0056 26.4 10.0 28 163-194 118-145 (226)
85 PRK09961 exoaminopeptidase; Pr 39.5 86 0.0019 32.2 6.9 62 77-173 5-66 (344)
86 TIGR03107 glu_aminopep glutamy 39.1 95 0.0021 32.1 7.1 63 78-173 4-66 (350)
87 PF15027 DUF4525: Domain of un 32.3 76 0.0016 28.3 4.3 57 26-90 10-67 (138)
88 COG4310 Uncharacterized protei 30.5 1E+02 0.0023 31.7 5.5 65 157-226 174-238 (435)
89 PLN02594 phosphatidate cytidyl 28.4 67 0.0015 33.2 3.9 34 10-43 53-86 (342)
90 PRK09864 putative peptidase; P 24.4 2.2E+02 0.0048 29.6 6.9 60 78-173 6-65 (356)
91 KOG3566 Glycosylphosphatidylin 24.3 75 0.0016 35.0 3.5 59 7-69 10-78 (617)
92 PF06072 Herpes_US9: Alphaherp 22.3 50 0.0011 25.5 1.3 32 6-37 23-54 (60)
93 PF13127 DUF3955: Protein of u 21.9 83 0.0018 24.4 2.5 30 27-58 5-34 (63)
94 PHA02898 virion envelope prote 20.3 84 0.0018 26.2 2.3 19 25-43 44-62 (92)
95 COG4882 Predicted aminopeptida 20.1 1.6E+02 0.0034 31.0 4.7 66 163-228 191-263 (486)
No 1
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-74 Score=594.75 Aligned_cols=337 Identities=36% Similarity=0.553 Sum_probs=281.7
Q ss_pred ccccchHHHHHHHHHHhchhhHHHHHHHHHHHHHhcc--cCCcccccccccCCCcceeeecchhhHHHHHHHHHHHHhhh
Q 014238 8 KKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLP--VLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLH 85 (428)
Q Consensus 8 ~~~~r~~~~l~~~l~~~~~~ls~ll~l~Gi~~ll~lP--~~~r~TYisENALlPg~v~~~f~~~~~~~a~~y~~~l~~~~ 85 (428)
.+|+|+++++. +|+...++++++++|+.|+++|+ .+.++|||||||||||||++||+..+++++++|.+++++++
T Consensus 7 ~~~~~~~~~l~---~r~ia~lpv~s~v~g~awf~aL~~~pl~~rtyiSEnAlmpg~v~s~~~~~~~~~~~~~~~~~~~~r 83 (617)
T KOG3566|consen 7 PIRQIPLVRLL---IRHIAHLPVFSYVAGLAWFFALALLPLLKRTYISENALMPGQVYSYFRNRDVSDASKLLKDIKNFR 83 (617)
T ss_pred chhhHHhHHHH---HhhcccchHHHHHHHHHHHHHHhhchhcccceeeccccCccchhhhhhccchhhhHHHHHHHHHHH
Confidence 47889999985 66666677777888888887764 45799999999999999999999999999999999999998
Q ss_pred cCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEE
Q 014238 86 SNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIV 165 (428)
Q Consensus 86 ~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiV 165 (428)
. .... ....|+...|++.|+|+++|+|+.. +| ..+.|+|||||+||||+||||+||
T Consensus 84 ~-~~s~--~~~~~~~~~~q~FGl~t~~~n~~~~--P~-------------------e~y~G~NvyGilRAPRgdgtEsiv 139 (617)
T KOG3566|consen 84 K-HESQ--VPNAWAEVSMQEFGLETHTQNYSNG--PF-------------------EEYSGENVYGILRAPRGDGTESIV 139 (617)
T ss_pred H-hhcc--cchhHHHHHHHHhCccccccCccCC--ch-------------------hhcCCceEEEEEecCCCCCcceEE
Confidence 7 3322 6788999999999999999998642 11 135799999999999999999999
Q ss_pred EEEeeccCCCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhcCCCCCCCCCCcccccccCC
Q 014238 166 LVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGN 245 (428)
Q Consensus 166 L~ap~~~~~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~ 245 (428)
|+|||+..++. | ..++|+++||++|++||+||||||||||+|+ +..|++|||++||++.. ... .+..+
T Consensus 140 l~vP~~~~~~~-~-~~~v~l~lsla~~f~r~~yWsKDII~v~~d~---~~~g~~AwLeaYhd~~s--~~~----~~~ep- 207 (617)
T KOG3566|consen 140 LVVPYGRSSGS-N-SASVALLLSLADYFSRWVYWSKDIIFVFTDG---PALGLDAWLEAYHDILS--LTG----ISVEP- 207 (617)
T ss_pred EEEecccCCCc-c-hhHHHHHHHHHHHhcCCeeecccEEEEEeCC---ccccHHHHHHHhhcccc--ccc----ccccc-
Confidence 99999988776 4 6799999999999999999999999999997 77999999999999521 111 11111
Q ss_pred CCccccccccccchhhheeeeEEeecCCCCCcceEEEEeecCCCCCCChhHHHHHHHHHhhccCceeeeeehhccchhhh
Q 014238 246 NNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKW 325 (428)
Q Consensus 246 ~~~~~~~~~~~~raG~IqaAl~Le~~~~~~~~~~l~I~~eG~NGqLPNLDLiN~v~~la~~~~gi~v~l~~~~~~~~~~w 325 (428)
.....|+|+++||+++|+++. .+++|+|.+||+|||||||||+|+...+++ ++|+.|++++..
T Consensus 208 -------~~i~~ragal~aal~l~~se~--~~d~v~i~~eglNGqlPNLDlf~i~~~~~~-k~g~~v~l~g~~------- 270 (617)
T KOG3566|consen 208 -------DEIQARAGALAAALVLEVSEK--FQDIVEIQYEGLNGQLPNLDLFNITQIFMQ-KEGLLVTLQGKL------- 270 (617)
T ss_pred -------ccccccccceeeEEEEEeccc--cceeEEEEecccCCCCCcchHHHHHHHHHH-hcCceEEEecCc-------
Confidence 234479999999999999965 689999999999999999999987766665 689999998732
Q ss_pred hhhhhhHHHhhhhhhhccCCCcccCCChhhHHHHHHHHHHHHHHhhccCcCCccccccCCcccEEEEEEEcCCCcccccc
Q 014238 326 VKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDR 405 (428)
Q Consensus 326 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~Y~~~l~~ll~~~~~qa~G~ptG~Hg~F~~y~IdAiTL~~~~~~~~~~~~~ 405 (428)
..++|.. .++|.+++++|+.+++.||+|.|||+||+|++|||||+|++..++++.+ .+
T Consensus 271 -----------------~~~d~~s---~~~~~s~l~tl~~~l~~QA~g~ptg~Hglf~~Y~vdaLTlrr~~~~s~~--~~ 328 (617)
T KOG3566|consen 271 -----------------LPLDWHS---NSMYLSGLKTLLLMLLTQASGSPTGIHGLFLRYRVDALTLRRILSDSFK--QY 328 (617)
T ss_pred -----------------CCccccc---CchhhhhHHHHHHHHHHHHhcCCCCccccccccccceEEeccccccccc--cc
Confidence 1245543 3489999999999999999999999999999999999999877666655 55
Q ss_pred cchhhhhchhh-hhcccce
Q 014238 406 RNDFLLHGGRI-NGLLGGI 423 (428)
Q Consensus 406 ~~~~~~~~~rl-~~~~~~~ 423 (428)
+.| +.++||. ||.+|++
T Consensus 329 ~~d-~~~~gkaiEg~fRsL 346 (617)
T KOG3566|consen 329 GYD-LVRFGKAIEGMFRSL 346 (617)
T ss_pred chH-HHHHHHHHHHHHHHH
Confidence 555 5599999 7999986
No 2
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=100.00 E-value=1.4e-58 Score=487.97 Aligned_cols=224 Identities=40% Similarity=0.610 Sum_probs=188.8
Q ss_pred ccceEEEEEcCCCCCCceEEEEEEeeccCCCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHH
Q 014238 145 YGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRD 224 (428)
Q Consensus 145 ~G~NvygilrApRgdgtEaiVL~ap~~~~~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~a 224 (428)
+|+|||||+|||||||||||||+|||++.+++.| ..|+|+++||++||+|++||||||||||+|+ +..|++|||++
T Consensus 2 ~G~nvy~i~rapR~d~tEaivl~~~~~~~~~~~n-~~~v~l~lal~~~~~~~~~wsKDii~l~~~~---~~~g~~awl~~ 77 (504)
T PF04114_consen 2 SGTNVYGILRAPRGDGTEAIVLVVPWRDSDGEYN-AGGVALALALARYFRRQSYWSKDIIFLFTDD---ELAGMQAWLEA 77 (504)
T ss_pred CceEEEEEEecCCCCCceeEEEEEecCCCCcccc-hhhHHHHHHHHHHhhhchhhhccEEEEecCC---cchHHHHHHHH
Confidence 6999999999999999999999999998877555 7899999999999999999999999999996 57899999999
Q ss_pred hcCCCCCCCCCCcccccccCCCCccccccccccchhhheeeeEEeecCCCCCcceEEEEeecCCCCCCChhHHHHHHHHH
Q 014238 225 YHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLA 304 (428)
Q Consensus 225 Yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~raG~IqaAl~Le~~~~~~~~~~l~I~~eG~NGqLPNLDLiN~v~~la 304 (428)
||+.+.++... .....|+|+||||+|||+++. .+++++|++||.|||||||||||++++++
T Consensus 78 Yh~~~~~~~~~-----------------~~l~~~~G~i~aAl~le~~~~--~~~~v~i~~eG~NGqLPNLDL~N~~~~i~ 138 (504)
T PF04114_consen 78 YHDSNTKGLSS-----------------SPLPLRAGSIQAALVLEYPSD--SFSSVEIKYEGLNGQLPNLDLVNTVVRIA 138 (504)
T ss_pred HhCCCCccccc-----------------cCCCCCCcceeEEEEEEecCC--CccEEEEEEecCCCCCCCchHHHHHHHHH
Confidence 99975332221 124469999999999999976 46779999999999999999999999999
Q ss_pred hhccCceeeeeehhccchhhhhhhhhhHHHhhhhhhhccCCCcccCCChhhHHHHHHHHHHHHHHhhccCcCCccccccC
Q 014238 305 VHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRD 384 (428)
Q Consensus 305 ~~~~gi~v~l~~~~~~~~~~w~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~Y~~~l~~ll~~~~~qa~G~ptG~Hg~F~~ 384 (428)
++ +|+++.+...... .+|. +.++|..++++|+++|++||+|.|+|+||+|++
T Consensus 139 ~~-~gi~~~~~~~~~~------------------------~~~~---~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~ 190 (504)
T PF04114_consen 139 EK-EGIPMGVSLHLQP------------------------SDWH---SNSDYESRLKTLLRGMLNQALGGPTGPHGAFLR 190 (504)
T ss_pred Hh-cCCCccccccccc------------------------cccc---cccchHHHHHHHHHHHHHhccCCCCCCchhhhh
Confidence 84 6777665432110 1111 235899999999999999999999999999999
Q ss_pred CcccEEEEEEEcCCCcccccccchhhhhchhh-hhccccee
Q 014238 385 YQVDAITLEFSLRISFDRLDRRNDFLLHGGRI-NGLLGGIT 424 (428)
Q Consensus 385 y~IdAiTL~~~~~~~~~~~~~~~~~~~~~~rl-~~~~~~~~ 424 (428)
|+||||||++.+..++ ...++ ...||+ ||++|++.
T Consensus 191 y~I~aiTl~~~~~~~~----~~~~~-~~~gr~~E~~~RslN 226 (504)
T PF04114_consen 191 YRIDAITLRGVKSTGP----GPHDF-TAFGRILEGIFRSLN 226 (504)
T ss_pred cCccEEEEecccCCCC----CCcCH-HHHHHHHHHHHHHHH
Confidence 9999999998766553 34554 489999 89999874
No 3
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.08 E-value=1.2e-08 Score=103.86 Aligned_cols=118 Identities=13% Similarity=0.243 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238 93 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 172 (428)
Q Consensus 93 ~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~ 172 (428)
...++||.++|+++|+++..|.|..+ |. +..... ..+ .....|.||+|.+++ .+.|.||+++|||+
T Consensus 55 ~~aA~yL~~~f~~lG~~v~~q~f~~~---~~----~~~~~g---~~~-~~~~~g~nVIa~~~G---~~~~~Ill~AH~DT 120 (346)
T PRK10199 55 MLSADYLRQQFQQMGYQSDIRTFNSR---YI----YTARDN---RKN-WHNVTGSTVIAAHEG---KAPQQIIIMAHLDT 120 (346)
T ss_pred HHHHHHHHHHHHHCCCceEeeecccc---ce----eecccc---ccc-ccCCccceEEEEECC---CCCCeEEEEEEcCc
Confidence 35799999999999999998887632 00 000000 000 113578999999965 45689999999997
Q ss_pred C-----------------CCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHh
Q 014238 173 V-----------------KGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 173 ~-----------------~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aY 225 (428)
. .|+.|+++|+|.+|.+++.|++.+ ..++|.|+++.+++.+..|.++|++..
T Consensus 121 V~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~~-~~~~I~fv~~~~EE~Gl~GS~~~~~~~ 189 (346)
T PRK10199 121 YAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNVP-TEYGIRFVATSGEEEGKLGAENLLKRM 189 (346)
T ss_pred CCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhCC-CCCcEEEEEECCcccCcHHHHHHHHhc
Confidence 4 267788899999999999998765 568999999998888899999999863
No 4
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.39 E-value=1e-06 Score=80.61 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=52.8
Q ss_pred eEEEEEEeeccC---------CCCCcchhhHHHHHHHHHHHhcC-CCCccceEEEeeCCCCCCchhHHHHHHHhc
Q 014238 162 EAIVLVTPYNAV---------KGGVRETLSLGIAYSVFSLLTRV-TWLAKDIIWLVADSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 162 EaiVL~ap~~~~---------~~~~~~~~gval~LaLa~yl~~~-~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh 226 (428)
|.|||++|||+. .|+.+|++|+|++|.+||.|++. .-..|+|+||+.|+++.+..|.++|++..+
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~ 75 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDH 75 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhh
Confidence 789999999982 35677899999999999999874 233689999999999888999999999433
No 5
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.09 E-value=1.8e-05 Score=87.74 Aligned_cols=163 Identities=16% Similarity=0.236 Sum_probs=100.7
Q ss_pred CCcccccccccCCCcceeeecchhhHHHHHHHHHHHHhhhcCCCCC---chhhHHHHHHHHHHcCCceee--eecccCCC
Q 014238 46 LAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGA---TTESHGIIAKYMSNLGAQVNN--HKFHPQLN 120 (428)
Q Consensus 46 ~~r~TYisENALlPg~v~~~f~~~~~~~a~~y~~~l~~~~~~~~~~---~~~~~~~l~~~l~~lGle~~~--q~f~~~~~ 120 (428)
+.++.....-+..|+| |..+. |..-..++.....++.++ .+...++|.+++.++.-..+. .+.+...
T Consensus 38 ~~~pl~~~~e~~~~~~----f~~~r---A~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~- 109 (834)
T KOG2194|consen 38 LPEPLTQPQEQTLPSQ----FSEAR---ALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDL- 109 (834)
T ss_pred ccccCCCcchhcCchh----hHHHH---HHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheece-
Confidence 4667777777777765 44433 444455555553333222 123577888777776543332 1111000
Q ss_pred cCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC---CCCCcchhhHHHHHHHHHHHhc-C
Q 014238 121 QFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV---KGGVRETLSLGIAYSVFSLLTR-V 196 (428)
Q Consensus 121 ~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~---~~~~~~~~gval~LaLa~yl~~-~ 196 (428)
|.. ++++....-.-+=....||.--+-.--++.+++|+|.+|||+. .|+.|++.+||.+|.++|++.+ .
T Consensus 110 q~~-------sg~~~~~~~~~~Y~~i~NIvVki~~k~~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~ 182 (834)
T KOG2194|consen 110 QSA-------SGSFILEGMTLVYQNISNIVVKISPKNGNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSD 182 (834)
T ss_pred eec-------cceeeehhhhheeeeeeeEEEecCCCCCCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCC
Confidence 000 0011001100111356777777766556666799999999975 4667778999999999999965 5
Q ss_pred CCCccceEEEeeCCCCCCchhHHHHHH
Q 014238 197 TWLAKDIIWLVADSQYGEYAPVAAWLR 223 (428)
Q Consensus 197 ~~wAKDIIfv~~D~~~~~~~G~~AWL~ 223 (428)
+-+-+||||+|-++++.++.|..+|..
T Consensus 183 ~~l~~~vVFLfNgaEE~~L~gsH~FIt 209 (834)
T KOG2194|consen 183 KLLTHSVVFLFNGAEESGLLGSHAFIT 209 (834)
T ss_pred CcccccEEEEecCcccchhhhccccee
Confidence 667899999999999888999999965
No 6
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=97.54 E-value=0.0017 Score=67.41 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhhcCCCCC--chhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEE
Q 014238 73 EANKLIKELNNLHSNPLGA--TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTV 150 (428)
Q Consensus 73 ~a~~y~~~l~~~~~~~~~~--~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvy 150 (428)
.+.++.++|-+..+.+... .....+||.++|+++|+++..+... ...+.|++
T Consensus 38 ~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~--------------------------~~~~~~li 91 (410)
T PRK06133 38 AYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTP--------------------------PSAGDMVV 91 (410)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccC--------------------------CCCCCeEE
Confidence 3444455554444332211 1247899999999999997755421 11357999
Q ss_pred EEEcCCCCCCceEEEEEEeeccCC--------------------CCCcchhhHHHHHHHHHHHhcCCC-CccceEEEeeC
Q 014238 151 GIIRAPRGDGKEAIVLVTPYNAVK--------------------GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVAD 209 (428)
Q Consensus 151 gilrApRgdgtEaiVL~ap~~~~~--------------------~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D 209 (428)
+.+.+ .+.-.|++.+|+|... |..+...+++.+|+.++++++... +..+|+|+|+-
T Consensus 92 a~~~g---~~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 168 (410)
T PRK06133 92 ATFKG---TGKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNP 168 (410)
T ss_pred EEECC---CCCceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEEC
Confidence 99864 2335799999998652 112445689999998999987654 45799999964
Q ss_pred CCCCCchhHHHHHHHhc
Q 014238 210 SQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 210 ~~~~~~~G~~AWL~aYh 226 (428)
+++.+..|++.+++++.
T Consensus 169 dEE~g~~G~~~~~~~~~ 185 (410)
T PRK06133 169 DEETGSPGSRELIAELA 185 (410)
T ss_pred CcccCCccHHHHHHHHh
Confidence 44444579999998864
No 7
>PRK08596 acetylornithine deacetylase; Validated
Probab=97.45 E-value=0.0021 Score=67.00 Aligned_cols=125 Identities=19% Similarity=0.221 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhhcCCC--CCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEE
Q 014238 73 EANKLIKELNNLHSNPL--GATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTV 150 (428)
Q Consensus 73 ~a~~y~~~l~~~~~~~~--~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvy 150 (428)
.+.++.++|-+..+.+. ....+..+||.++|+++|+++..+... -...||+
T Consensus 14 ~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~---------------------------~~~~nvi 66 (421)
T PRK08596 14 ELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVY---------------------------PNDPNVV 66 (421)
T ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEcc---------------------------CCCceEE
Confidence 34455555555544332 122346899999999999987665421 0235999
Q ss_pred EEEcCCCCCCceEEEEEEeeccCC------------------------CCCcchhhHHHHHHHHHHHhcCC-CCccceEE
Q 014238 151 GIIRAPRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIW 205 (428)
Q Consensus 151 gilrApRgdgtEaiVL~ap~~~~~------------------------~~~~~~~gval~LaLa~yl~~~~-~wAKDIIf 205 (428)
+.+++-..++...|+|.+|+|... |..|...+++.+++.++.+++.. -+..||+|
T Consensus 67 a~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~ 146 (421)
T PRK08596 67 GVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIF 146 (421)
T ss_pred EEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 998652112235799999998531 22344578888888888887654 46789999
Q ss_pred EeeCCCCCCchhHHHHHHH
Q 014238 206 LVADSQYGEYAPVAAWLRD 224 (428)
Q Consensus 206 v~~D~~~~~~~G~~AWL~a 224 (428)
+|+-+++.+..|++.+++.
T Consensus 147 ~~~~dEE~g~~G~~~~~~~ 165 (421)
T PRK08596 147 QSVIGEEVGEAGTLQCCER 165 (421)
T ss_pred EEEeccccCCcCHHHHHhc
Confidence 9975555455799999876
No 8
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=97.42 E-value=0.0015 Score=67.74 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
..++||.++|+++|+++.... . .||+|.+++.. .+...+++..|+|..
T Consensus 32 ~~~~~l~~~~~~~G~~~~~~~------------------------------~-~nl~a~~~g~~-~~~~~l~~~~H~DtV 79 (401)
T TIGR01879 32 EAQDLFKKRMRAAGLEVRFDE------------------------------V-GNLIGRKEGTE-PPLEVVLSGSHIDTV 79 (401)
T ss_pred HHHHHHHHHHHHCCCEEEEec------------------------------C-CcEEEEecCCC-CCCCEEEEecccccC
Confidence 578999999999999976432 1 39999997522 124789999999976
Q ss_pred --CCCCcchhhHHHHHHHHHHHhcCCC-CccceEEEeeCCCCC-----CchhHHHHHHHh
Q 014238 174 --KGGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYG-----EYAPVAAWLRDY 225 (428)
Q Consensus 174 --~~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D~~~~-----~~~G~~AWL~aY 225 (428)
.+..+...|++.++..++.+++... +.+||+|+++-.+++ +..|.+.|+...
T Consensus 80 ~~gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~ 139 (401)
T TIGR01879 80 VNGGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLA 139 (401)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhccc
Confidence 3445557899999999999987655 689999999755554 567888887643
No 9
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=97.33 E-value=0.0021 Score=64.94 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
+..+||.++|+++|+++..+.... ...+.|+++.+.+ .+...|+|.+|+|..
T Consensus 19 ~~~~~l~~~l~~~G~~~~~~~~~~-------------------------~~~~~nl~~~~~~---~~~~~i~l~~H~Dtv 70 (364)
T TIGR01892 19 DLIDWAQAYLEALGFSVEVQPFPD-------------------------GAEKSNLVAVIGP---SGAGGLALSGHTDVV 70 (364)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCC-------------------------CCccccEEEEecC---CCCCeEEEEcccccc
Confidence 678999999999999877664311 1135799999843 245679999988753
Q ss_pred C-----------------------CCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhc
Q 014238 174 K-----------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 174 ~-----------------------~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh 226 (428)
. |..|...+++.+|+.+++|++.. +..+|.|+|+-+++.+..|++..++++.
T Consensus 71 p~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~-~~~~v~~~~~~~EE~g~~G~~~~~~~~~ 145 (364)
T TIGR01892 71 PYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAEQ-LKKPLHLALTADEEVGCTGAPKMIEAGA 145 (364)
T ss_pred cCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhcC-cCCCEEEEEEeccccCCcCHHHHHHhcC
Confidence 1 12234567899999999998765 5789999997545545579999998864
No 10
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=97.33 E-value=0.0025 Score=64.59 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=80.7
Q ss_pred HHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCC
Q 014238 77 LIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAP 156 (428)
Q Consensus 77 y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrAp 156 (428)
..++|-+....+.. .....+||.++|+++|+++..+..... ...+.|+++++++.
T Consensus 5 ~~~~l~~i~s~s~~-e~~~~~~l~~~l~~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~g~ 59 (361)
T TIGR01883 5 YFLELIQIDSESGK-EKAILTYLKKQITKLGIPVSLDEVPAE------------------------VSNDNNLIARLPGT 59 (361)
T ss_pred HHHHHeecCCCCCc-HHHHHHHHHHHHHHcCCEEEEeccccc------------------------cCCCceEEEEEeCC
Confidence 34444444433322 236789999999999998766542110 11357999999753
Q ss_pred CCCCceEEEEEEeeccCC-----------------CC----CcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCc
Q 014238 157 RGDGKEAIVLVTPYNAVK-----------------GG----VRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEY 215 (428)
Q Consensus 157 RgdgtEaiVL~ap~~~~~-----------------~~----~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~ 215 (428)
.+...|+|.+|.|... |. .|...++|.+|.+++.|++..-+..+|.|+|+=+++.+.
T Consensus 60 --~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~~~~~~v~~~~~~~EE~g~ 137 (361)
T TIGR01883 60 --VKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEETPHGTIEFIFTVKEELGL 137 (361)
T ss_pred --CCCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCc
Confidence 2235799999987632 11 234578999998888887654456799999964455556
Q ss_pred hhHHHHHHH
Q 014238 216 APVAAWLRD 224 (428)
Q Consensus 216 ~G~~AWL~a 224 (428)
.|++.|++.
T Consensus 138 ~G~~~~~~~ 146 (361)
T TIGR01883 138 IGMRLFDES 146 (361)
T ss_pred hhHhHhChh
Confidence 799988764
No 11
>PRK09133 hypothetical protein; Provisional
Probab=97.28 E-value=0.0053 Score=64.96 Aligned_cols=127 Identities=22% Similarity=0.225 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhhcCCC-CCchhhHHHHHHHHHHcCCceeeee-cccCCCcCCCcccccCCCCCccccCCccccccceEE
Q 014238 73 EANKLIKELNNLHSNPL-GATTESHGIIAKYMSNLGAQVNNHK-FHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTV 150 (428)
Q Consensus 73 ~a~~y~~~l~~~~~~~~-~~~~~~~~~l~~~l~~lGle~~~q~-f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvy 150 (428)
.+..+.++|-+..+.+. +......+||.++|+++|+++.... +.. .....|++
T Consensus 38 ~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~-------------------------~~~~~nli 92 (472)
T PRK09133 38 AARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGP-------------------------YPRKGNLV 92 (472)
T ss_pred HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccC-------------------------CCCceeEE
Confidence 35555666655554431 2233678999999999999864322 210 01346999
Q ss_pred EEEcCCCCCCceEEEEEEeeccC-----------------------CCCCcchhhHHHHHHHHHHHhcCC-CCccceEEE
Q 014238 151 GIIRAPRGDGKEAIVLVTPYNAV-----------------------KGGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWL 206 (428)
Q Consensus 151 gilrApRgdgtEaiVL~ap~~~~-----------------------~~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv 206 (428)
+.++++ +....++|.+|+|.. .|..|+..+++.+|..++++++.. -...+|+|+
T Consensus 93 ~~~~g~--~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~ 170 (472)
T PRK09133 93 ARLRGT--DPKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILA 170 (472)
T ss_pred EEecCC--CCCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 999764 223679999988742 133455678999998888887754 355799999
Q ss_pred eeCCCC-CCchhHHHHHHHhc
Q 014238 207 VADSQY-GEYAPVAAWLRDYH 226 (428)
Q Consensus 207 ~~D~~~-~~~~G~~AWL~aYh 226 (428)
++-.++ ++..|++.+++++.
T Consensus 171 ~~~dEE~~g~~G~~~l~~~~~ 191 (472)
T PRK09133 171 LTGDEEGTPMNGVAWLAENHR 191 (472)
T ss_pred EECccccCccchHHHHHHHHh
Confidence 976566 66789999998765
No 12
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.20 E-value=0.0052 Score=62.74 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
+.++.++|-+..+.+.+ .....+||.++|+++|+++..+.+. ..+.|+++.+
T Consensus 4 ~~~~l~~Lv~i~s~s~~-e~~~~~~l~~~l~~~G~~~~~~~~~---------------------------~~~~~l~a~~ 55 (377)
T PRK08588 4 KIQILADIVKINSVNDN-EIEVANYLQDLFAKHGIESKIVKVN---------------------------DGRANLVAEI 55 (377)
T ss_pred HHHHHHHHhcCCCCCCc-HHHHHHHHHHHHHHCCCceEEEecC---------------------------CCCceEEEEe
Confidence 34455566555544332 3367999999999999987654321 1346899987
Q ss_pred cCCCCCCceEEEEEEeeccCCC------------------------CCcchhhHHHHHHHHHHHhcC-CCCccceEEEee
Q 014238 154 RAPRGDGKEAIVLVTPYNAVKG------------------------GVRETLSLGIAYSVFSLLTRV-TWLAKDIIWLVA 208 (428)
Q Consensus 154 rApRgdgtEaiVL~ap~~~~~~------------------------~~~~~~gval~LaLa~yl~~~-~~wAKDIIfv~~ 208 (428)
.+ +...|++.+|+|.... ..|...+++.++..++.|++. ..+.++|.|+|+
T Consensus 56 g~----~~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~ 131 (377)
T PRK08588 56 GS----GSPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLAT 131 (377)
T ss_pred CC----CCceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 32 3378999998875421 113345787777666666554 456799999997
Q ss_pred CCCCCCchhHHHHHHHh
Q 014238 209 DSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 209 D~~~~~~~G~~AWL~aY 225 (428)
-+++.+..|++.++++.
T Consensus 132 ~dEE~g~~G~~~~~~~~ 148 (377)
T PRK08588 132 AGEEVGELGAKQLTEKG 148 (377)
T ss_pred cccccCchhHHHHHhcC
Confidence 55554557999999863
No 13
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=97.13 E-value=0.0047 Score=64.13 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238 93 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 172 (428)
Q Consensus 93 ~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~ 172 (428)
....+||.++|+++|+++..+ ...|+++.+++.. .+...|++..|+|.
T Consensus 38 ~~~~~~l~~~l~~~G~~~~~~-------------------------------~~~nlia~~~g~~-~~~~~l~~~~H~Dt 85 (414)
T PRK12890 38 RAARALLAAWMRAAGLEVRRD-------------------------------AAGNLFGRLPGRD-PDLPPLMTGSHLDT 85 (414)
T ss_pred HHHHHHHHHHHHHCCCEEEEc-------------------------------CCCcEEEEeCCCC-CCCCEEEEeCcccC
Confidence 357899999999999987632 1239999996522 23458999999997
Q ss_pred CC--CCCcchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCC-----CchhHHHHHHH
Q 014238 173 VK--GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYG-----EYAPVAAWLRD 224 (428)
Q Consensus 173 ~~--~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~-----~~~G~~AWL~a 224 (428)
.. +..+...|+|.+++.++.+++.. -+.+||+|+++-+++. +..|.+++.+.
T Consensus 86 Vp~~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~ 145 (414)
T PRK12890 86 VPNGGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGT 145 (414)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcc
Confidence 63 44555789999998888887654 3679999999755553 34677777654
No 14
>PRK05111 acetylornithine deacetylase; Provisional
Probab=97.06 E-value=0.0095 Score=60.84 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhhcCCCCC------chhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccc
Q 014238 74 ANKLIKELNNLHSNPLGA------TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGI 147 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~------~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~ 147 (428)
...++++|-+..+-+... .....+||.++|+++|+++..+.... .....
T Consensus 7 ~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------------------------~~~~~ 61 (383)
T PRK05111 7 FIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPG-------------------------TRGKF 61 (383)
T ss_pred HHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCC-------------------------CCCCc
Confidence 344555555554433221 12478999999999999877654210 01246
Q ss_pred eEEEEEcCCCCCCceEEEEEEeeccCC-----------------------CCCcchhhHHHHHHHHHHHhcCCCCccceE
Q 014238 148 NTVGIIRAPRGDGKEAIVLVTPYNAVK-----------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDII 204 (428)
Q Consensus 148 NvygilrApRgdgtEaiVL~ap~~~~~-----------------------~~~~~~~gval~LaLa~yl~~~~~wAKDII 204 (428)
|+++.+.. +.+.|++.+|+|... |..|...+++.+|+.++.|++.. +..||+
T Consensus 62 nvia~~g~----~~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~-~~~~i~ 136 (383)
T PRK05111 62 NLLASLGS----GEGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLTK-LKKPLY 136 (383)
T ss_pred eEEEEeCC----CCCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhcC-CCCCeE
Confidence 99999832 224699988886531 11233457888888888887654 468999
Q ss_pred EEeeCCCCCCchhHHHHHHHh
Q 014238 205 WLVADSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 205 fv~~D~~~~~~~G~~AWL~aY 225 (428)
|+|+-+++.+..|++++++++
T Consensus 137 ~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 137 ILATADEETSMAGARAFAEAT 157 (383)
T ss_pred EEEEeccccCcccHHHHHhcC
Confidence 999755554557999999865
No 15
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=97.06 E-value=0.026 Score=58.80 Aligned_cols=99 Identities=7% Similarity=-0.006 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHcCCc-eeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238 94 ESHGIIAKYMSNLGAQ-VNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 172 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle-~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~ 172 (428)
++++||.++|+++|++ ++... .--||+|.+++..+++...|++++|.|+
T Consensus 34 ~~a~~l~~~l~~lG~~~v~~d~------------------------------~~gnv~~~~~~~~~~~~~~i~~~aHmDT 83 (410)
T TIGR01882 34 TFGNMLVDDLKSLGLQDAHYDE------------------------------KNGYVIATIPSNTDKDVPTIGFLAHVDT 83 (410)
T ss_pred HHHHHHHHHHHHcCCceEEEcC------------------------------CceEEEEEecCCCCCCCCEEEEEEeccc
Confidence 6889999999999996 65321 1248999997754433589999999987
Q ss_pred CCC----------------------------------------------C-------CcchhhHHHHHHHHHHHhcC-CC
Q 014238 173 VKG----------------------------------------------G-------VRETLSLGIAYSVFSLLTRV-TW 198 (428)
Q Consensus 173 ~~~----------------------------------------------~-------~~~~~gval~LaLa~yl~~~-~~ 198 (428)
..+ . .|+..|+|.++..+++|++. .-
T Consensus 84 v~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~~ 163 (410)
T TIGR01882 84 ADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPEI 163 (410)
T ss_pred CcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCCC
Confidence 531 0 12346899999999999775 33
Q ss_pred CccceEEEeeCCCCCCchhHHHHHH
Q 014238 199 LAKDIIWLVADSQYGEYAPVAAWLR 223 (428)
Q Consensus 199 wAKDIIfv~~D~~~~~~~G~~AWL~ 223 (428)
+..+|.|+|+=+++.+ .|++.++.
T Consensus 164 ~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 164 KHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred CCCCEEEEEECcccCC-cCcchhhh
Confidence 4679999997545444 47777654
No 16
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=96.97 E-value=0.01 Score=61.37 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
...+||.++|+++|+++..+. ..|+++.+++.. .+...++|.+|+|..
T Consensus 41 ~~~~~l~~~l~~~G~~~~~~~-------------------------------~~n~~a~~~g~~-~~~~~l~l~~H~DtV 88 (412)
T PRK12893 41 EARDLLAQWMEEAGLTVSVDA-------------------------------IGNLFGRRAGTD-PDAPPVLIGSHLDTQ 88 (412)
T ss_pred HHHHHHHHHHHHcCCEEEEcC-------------------------------CCcEEEEeCCCC-CCCCEEEEEecccCC
Confidence 457999999999999876421 128999996521 124679999999975
Q ss_pred C--CCCcchhhHHHHHHHHHHHhcCCC-CccceEEEeeCCCCCC-----chhHHHHHHHhc
Q 014238 174 K--GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGE-----YAPVAAWLRDYH 226 (428)
Q Consensus 174 ~--~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D~~~~~-----~~G~~AWL~aYh 226 (428)
. +..+...|++.+|..++.|++... +.+||+|+++=+++.+ ..|...+...+.
T Consensus 89 p~~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~ 149 (412)
T PRK12893 89 PTGGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALP 149 (412)
T ss_pred CCCCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCC
Confidence 2 223446789999999999987654 6789999997444432 568877775543
No 17
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=96.96 E-value=0.0084 Score=62.30 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
...+||.++|+++|+++..+. ..|+++.+++. +.+...++|..|+|..
T Consensus 38 ~~a~~l~~~l~~~g~~~~~~~-------------------------------~~nl~a~~~g~-~~~~~~l~l~gH~DtV 85 (413)
T PRK09290 38 QARDLFAEWMEAAGLTVRVDA-------------------------------VGNLFGRLEGR-DPDAPAVLTGSHLDTV 85 (413)
T ss_pred HHHHHHHHHHHHcCCEEEEcC-------------------------------CCcEEEEecCC-CCCCCEEEEecCccCC
Confidence 468999999999999876421 23899999641 1123579999999975
Q ss_pred C--CCCcchhhHHHHHHHHHHHhcCCC-CccceEEEeeCCCCC-----CchhHHHHHHHh
Q 014238 174 K--GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYG-----EYAPVAAWLRDY 225 (428)
Q Consensus 174 ~--~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D~~~~-----~~~G~~AWL~aY 225 (428)
. +..+...|+|.+++.++.+++..+ +.+||+|+++-+++. +..|.+.+++.|
T Consensus 86 p~~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~ 145 (413)
T PRK09290 86 PNGGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGAL 145 (413)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHccc
Confidence 3 233446789999888888876544 578999999744443 356888887543
No 18
>PRK07906 hypothetical protein; Provisional
Probab=96.95 E-value=0.0086 Score=62.36 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238 93 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 172 (428)
Q Consensus 93 ~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~ 172 (428)
.+..+||.++|+++|+++..+... ....|+++.+++. ..+...++|.+|+|.
T Consensus 25 ~~~~~~l~~~l~~~G~~~~~~~~~---------------------------~~~~nv~~~~~g~-~~~~~~lll~~H~Dt 76 (426)
T PRK07906 25 REAAEYVAEKLAEVGLEPTYLESA---------------------------PGRANVVARLPGA-DPSRPALLVHGHLDV 76 (426)
T ss_pred HHHHHHHHHHHHhCCCCeEEeecC---------------------------CCceEEEEEEeCC-CCCCCcEEEEccccc
Confidence 357899999999999997654310 1246899998642 123467999888875
Q ss_pred CC-----------------------CCCcchhhHHHHHHHHHHHhcCC-CCccceEEEee-CCCCCCchhHHHHHHHh
Q 014238 173 VK-----------------------GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVA-DSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 173 ~~-----------------------~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~-D~~~~~~~G~~AWL~aY 225 (428)
.. |..|+..+++.+|..++++++.. -+.++|.|+|+ |.+.++..|++.+++.+
T Consensus 77 Vp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~ 154 (426)
T PRK07906 77 VPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNH 154 (426)
T ss_pred CCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHH
Confidence 42 12234568999998888887654 34579999996 54433446889888765
No 19
>PRK07522 acetylornithine deacetylase; Provisional
Probab=96.92 E-value=0.016 Score=59.25 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
+.++.++|-+..+.+......+.+||.++|+++|+++..+.-. .-.+.||++.+
T Consensus 6 ~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~--------------------------~~~~~nv~a~~ 59 (385)
T PRK07522 6 SLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDP--------------------------EGDKANLFATI 59 (385)
T ss_pred HHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecC--------------------------CCCcccEEEEe
Confidence 4455566655555443322367899999999999987654210 01246899987
Q ss_pred cCCCCCCceEEEEEEeeccCC-----------------------CCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCC
Q 014238 154 RAPRGDGKEAIVLVTPYNAVK-----------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADS 210 (428)
Q Consensus 154 rApRgdgtEaiVL~ap~~~~~-----------------------~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~ 210 (428)
.. +....++|.+|.|... |..|...++|.+++.++.|++.. +.++|.|+|+=+
T Consensus 60 ~~---~~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~-~~~~i~~~~~~d 135 (385)
T PRK07522 60 GP---ADRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAAP-LRRPLHLAFSYD 135 (385)
T ss_pred CC---CCCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhCC-CCCCEEEEEEec
Confidence 43 2234799999887421 12233467888888888887765 468999999644
Q ss_pred CCCCchhHHHHHHHhc
Q 014238 211 QYGEYAPVAAWLRDYH 226 (428)
Q Consensus 211 ~~~~~~G~~AWL~aYh 226 (428)
++.+..|++..++++.
T Consensus 136 EE~g~~G~~~l~~~~~ 151 (385)
T PRK07522 136 EEVGCLGVPSMIARLP 151 (385)
T ss_pred cccCCccHHHHHHHhh
Confidence 4434579999998653
No 20
>PRK08652 acetylornithine deacetylase; Provisional
Probab=96.89 E-value=0.012 Score=59.16 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
+.+++++|-+....+.+. ....+||.++|+++|+++..+.. . ...|+++
T Consensus 4 ~~~~~~~lv~ips~s~~e-~~~~~~l~~~l~~~G~~v~~~~~---------------------------~-~~~~~~~-- 52 (347)
T PRK08652 4 AKELLKQLVKIPSPSGQE-DEIALHIMEFLESLGYDVHIESD---------------------------G-EVINIVV-- 52 (347)
T ss_pred HHHHHHHHhcCCCCCCch-HHHHHHHHHHHHHcCCEEEEEec---------------------------C-ceeEEEc--
Confidence 345566666665544332 36789999999999998764321 0 0134443
Q ss_pred cCCCCCCceEEEEEEeeccC---------------CCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhH
Q 014238 154 RAPRGDGKEAIVLVTPYNAV---------------KGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPV 218 (428)
Q Consensus 154 rApRgdgtEaiVL~ap~~~~---------------~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~ 218 (428)
+ +.-.|++.+|+|.. .|..+...++|.+++.++.|++. ....+|+|+|+-+++.+..|+
T Consensus 53 ----~-~~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~-~~~~~v~~~~~~dEE~g~~G~ 126 (347)
T PRK08652 53 ----N-SKAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE-FEDLNVGIAFVSDEEEGGRGS 126 (347)
T ss_pred ----C-CCCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc-ccCCCEEEEEecCcccCChhH
Confidence 2 22479999999864 23445567889888888888743 234599999975555445799
Q ss_pred HHHHHHh
Q 014238 219 AAWLRDY 225 (428)
Q Consensus 219 ~AWL~aY 225 (428)
+++++.+
T Consensus 127 ~~~~~~~ 133 (347)
T PRK08652 127 ALFAERY 133 (347)
T ss_pred HHHHHhc
Confidence 9999875
No 21
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=96.87 E-value=0.011 Score=60.31 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238 93 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 172 (428)
Q Consensus 93 ~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~ 172 (428)
....+||.++|+++|+++......... . ...+ |+++..++ ..+...|++.+|+|.
T Consensus 21 ~~~a~~l~~~l~~~G~~~~~~~~~~~~------------------~----~~~~-~~~~~~~g--~~~~~~ill~~H~Dt 75 (375)
T TIGR01910 21 ETIANYIKDLLREFGFSTDVIEITDDR------------------L----KVLG-KVVVKEPG--NGNEKSLIFNGHYDV 75 (375)
T ss_pred HHHHHHHHHHHHHCCCceEEEecCchh------------------c----cccc-ceEEeccC--CCCCCEEEEeccccc
Confidence 367899999999999998765421100 0 0012 45554443 123467999999975
Q ss_pred CC------------------------CCCcchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCCCchhHHHHHHHhc
Q 014238 173 VK------------------------GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 173 ~~------------------------~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~~~~G~~AWL~aYh 226 (428)
.. |..++..++|.+|+.++.+++.. -+..||+|+|+-.++.+..|+++++++.+
T Consensus 76 Vp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~ 154 (375)
T TIGR01910 76 VPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQRGY 154 (375)
T ss_pred ccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHcCC
Confidence 42 22345678888888888887654 47789999997555545679999998743
No 22
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=96.86 E-value=0.0072 Score=62.51 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
...+||.++|+++|+++.... . .|+++.+++.. ++ -.|++..|.|..
T Consensus 40 ~~~~~l~~~l~~~G~~~~~~~------------------------------~-~nl~a~~~g~~-~~-~~l~l~gH~DtV 86 (412)
T PRK12892 40 AARRRLAAWCEAAGLAVRIDG------------------------------I-GNVFGRLPGPG-PG-PALLVGSHLDSQ 86 (412)
T ss_pred HHHHHHHHHHHHcCCEEEEcC------------------------------C-CcEEEEecCCC-CC-CeEEEEccccCC
Confidence 467999999999999875321 1 29999997632 22 579999999975
Q ss_pred C--CCCcchhhHHHHHHHHHHHhcCC-CCccceEEEee-CCCCC----CchhHHHHHHHh
Q 014238 174 K--GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVA-DSQYG----EYAPVAAWLRDY 225 (428)
Q Consensus 174 ~--~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~-D~~~~----~~~G~~AWL~aY 225 (428)
. +-.+...|++.+|..++.+++.. -+.+||+|+++ |-+.+ +..|.+++++.+
T Consensus 87 p~~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~ 146 (412)
T PRK12892 87 NLGGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRL 146 (412)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCC
Confidence 2 22333568999998888888754 46789999996 54322 457999998643
No 23
>PRK07473 carboxypeptidase; Provisional
Probab=96.79 E-value=0.027 Score=57.95 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=79.8
Q ss_pred HHHHHHHHhhhcCCCCCc--hhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEE
Q 014238 75 NKLIKELNNLHSNPLGAT--TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 152 (428)
Q Consensus 75 ~~y~~~l~~~~~~~~~~~--~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygi 152 (428)
..+.++|-+..+.+.+.. ....+||.++|+++|+++..+... ...+.|+++.
T Consensus 14 ~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~--------------------------~~~~~~~~~~ 67 (376)
T PRK07473 14 LAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGR--------------------------QGFGDCVRAR 67 (376)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCC--------------------------CCCCCeEEEE
Confidence 344455544444332211 135679999999999998765311 1124588888
Q ss_pred EcCCCCCCceEEEEEEeeccCC--------------------CCCcchhhHHHHHHHHHHHhcCCC-CccceEEEeeCCC
Q 014238 153 IRAPRGDGKEAIVLVTPYNAVK--------------------GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQ 211 (428)
Q Consensus 153 lrApRgdgtEaiVL~ap~~~~~--------------------~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D~~ 211 (428)
++.+. .+...++|..|+|... |..|...+++.++..++.+++... ...+|.|+|+-++
T Consensus 68 ~~~~~-~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dE 146 (376)
T PRK07473 68 FPHPR-QGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDE 146 (376)
T ss_pred eCCCC-CCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCc
Confidence 86532 2335699999998431 112345788888888888876542 3458999997445
Q ss_pred CCCchhHHHHHHHhc
Q 014238 212 YGEYAPVAAWLRDYH 226 (428)
Q Consensus 212 ~~~~~G~~AWL~aYh 226 (428)
+.+..|++.|++++.
T Consensus 147 E~g~~g~~~~~~~~~ 161 (376)
T PRK07473 147 EVGTPSTRDLIEAEA 161 (376)
T ss_pred ccCCccHHHHHHHhh
Confidence 545679999999764
No 24
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=96.73 E-value=0.014 Score=60.76 Aligned_cols=96 Identities=9% Similarity=0.103 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
..++||.++|+++|+++.... .| |+++.+.+. ..+...|++..|+|..
T Consensus 41 ~~~~~l~~~l~~~G~~v~~~~------------------------------~g-Nl~a~~~g~-~~~~~~l~~~~H~DtV 88 (414)
T PRK12891 41 EARDLFVAWARDAGCTVRVDA------------------------------MG-NLFARRAGR-DPDAAPVMTGSHADSQ 88 (414)
T ss_pred HHHHHHHHHHHHCCCEEEECC------------------------------CC-CEEEEecCC-CCCCCeEEEEecccCC
Confidence 578999999999999877431 12 899999652 2244789999999975
Q ss_pred C--CCCcchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCCC-----chhHHHH
Q 014238 174 K--GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGE-----YAPVAAW 221 (428)
Q Consensus 174 ~--~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~~-----~~G~~AW 221 (428)
- +..+...||+.++..++.|++.. -+.+||.|+++-.++++ ..|..+|
T Consensus 89 p~gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~ 144 (414)
T PRK12891 89 PTGGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVF 144 (414)
T ss_pred CCCccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHH
Confidence 3 33455789999999999998654 46789999997544432 3577655
No 25
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=96.72 E-value=0.035 Score=54.01 Aligned_cols=122 Identities=10% Similarity=0.101 Sum_probs=77.5
Q ss_pred EEEEEeeccC-------CCCCcchhhHHHHHHHHHHHhcC----CCCccceEEEeeCCCCCCchhHHHHHHHhcCCCCCC
Q 014238 164 IVLVTPYNAV-------KGGVRETLSLGIAYSVFSLLTRV----TWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSN 232 (428)
Q Consensus 164 iVL~ap~~~~-------~~~~~~~~gval~LaLa~yl~~~----~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~~~~~~ 232 (428)
|++++.+|+. -|+....+|+..+||.|+.|++. .-+.|+|+|+|.++|-=++.|.+.||.+-....++.
T Consensus 3 Ilv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f~~ 82 (234)
T PF05450_consen 3 ILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNFPS 82 (234)
T ss_pred EEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcCcc
Confidence 6777778764 35556678999999999999865 457899999999998667899999999998764431
Q ss_pred CCCCcccccccCCCCccccccccccchhhheeeeEEeecCCCCCc-ceEEEEeecCCCCCCChhHHHHHHHHH
Q 014238 233 LDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENE-DTLGIYAEASNGQMPNLDLINIVHYLA 304 (428)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~raG~IqaAl~Le~~~~~~~~-~~l~I~~eG~NGqLPNLDLiN~v~~la 304 (428)
... + ... -+-..|...| |+..-+... ..+-+.+.+.+..--...+.+.+..++
T Consensus 83 ~~~-----~-----------~~~-i~~~~I~~~I--Elgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~ 136 (234)
T PF05450_consen 83 DSL-----Q-----------FQP-ISLDNIDSVI--ELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAA 136 (234)
T ss_pred ccc-----c-----------ccc-ccHHHCCEEE--EeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHH
Confidence 000 0 000 1334566655 555544322 235555555555444444444554444
No 26
>PRK06446 hypothetical protein; Provisional
Probab=96.71 E-value=0.027 Score=59.03 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhcCCCCCc--hhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEE
Q 014238 75 NKLIKELNNLHSNPLGAT--TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 152 (428)
Q Consensus 75 ~~y~~~l~~~~~~~~~~~--~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygi 152 (428)
..+.++|-+..+.+.... ....+||.++|+++|+++..+.. -...|+++.
T Consensus 5 ~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~----------------------------~~~~~lia~ 56 (436)
T PRK06446 5 LYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERT----------------------------KGHPVVYGE 56 (436)
T ss_pred HHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEec----------------------------CCCCEEEEE
Confidence 344555555544432211 36789999999999998775531 024689998
Q ss_pred EcCCCCCCceEEEEEEeeccCC------------------------CCCcchhhHHHHHHHHHHHhcCCCCccceEEEee
Q 014238 153 IRAPRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVA 208 (428)
Q Consensus 153 lrApRgdgtEaiVL~ap~~~~~------------------------~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~ 208 (428)
+.. .+...++|..|+|... |+.|...+++.++..++.+.+......+|.|+|+
T Consensus 57 ~~~---~~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~~~~~~i~~~~~ 133 (436)
T PRK06446 57 INV---GAKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKHKLNVNVKFLYE 133 (436)
T ss_pred ecC---CCCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Confidence 753 2235799999988621 2234467788777555555443456789999996
Q ss_pred CCCCCCchhHHHHHHHhc
Q 014238 209 DSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 209 D~~~~~~~G~~AWL~aYh 226 (428)
-.++.+..|++++++++.
T Consensus 134 ~dEE~g~~g~~~~l~~~~ 151 (436)
T PRK06446 134 GEEEIGSPNLEDFIEKNK 151 (436)
T ss_pred cccccCCHhHHHHHHHHH
Confidence 444445579999998854
No 27
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=96.67 E-value=0.017 Score=61.30 Aligned_cols=117 Identities=14% Similarity=0.162 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
+.++.++|-+..+ ++.....+++||.++|+++|+++.... ..|+++.+
T Consensus 6 ~~~~l~~l~~i~s-~s~~e~~~~~~l~~~l~~~G~~~~~~~-------------------------------~~n~~~~~ 53 (477)
T TIGR01893 6 VFKYFEEISKIPR-PSKNEKEVSNFIVNWAKKLGLEVKQDE-------------------------------VGNVLIRK 53 (477)
T ss_pred HHHHHHHHHcCCC-CCccHHHHHHHHHHHHHHcCCeEEEeC-------------------------------CCeEEEEE
Confidence 3344555555443 333345689999999999999865331 13899998
Q ss_pred cCCCC-CCceEEEEEEeeccCCCC------------------------------CcchhhHHHHHHHHHHHhcCCCCccc
Q 014238 154 RAPRG-DGKEAIVLVTPYNAVKGG------------------------------VRETLSLGIAYSVFSLLTRVTWLAKD 202 (428)
Q Consensus 154 rApRg-dgtEaiVL~ap~~~~~~~------------------------------~~~~~gval~LaLa~yl~~~~~wAKD 202 (428)
.+..+ .+...+++.+|.|..... .|...|++.++++++. ....-++
T Consensus 54 ~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~~~~~~ 130 (477)
T TIGR01893 54 PATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---NNLKHPP 130 (477)
T ss_pred cCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---CCCCCCC
Confidence 77443 244679999999854211 1556778877776553 3334579
Q ss_pred eEEEeeCCCCCCchhHHHHHHHh
Q 014238 203 IIWLVADSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 203 IIfv~~D~~~~~~~G~~AWL~aY 225 (428)
|.++|+-+++.+..|++++..+.
T Consensus 131 i~~~~~~dEE~g~~Gs~~l~~~~ 153 (477)
T TIGR01893 131 LELLFTVDEETGMDGALGLDENW 153 (477)
T ss_pred EEEEEEeccccCchhhhhcChhh
Confidence 99999754555667999987654
No 28
>PRK07907 hypothetical protein; Provisional
Probab=96.66 E-value=0.036 Score=58.33 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhhcCCCC-----CchhhHHHHHHHHHHcCC-ceeeeecccCCCcCCCcccccCCCCCccccCCccccccc
Q 014238 74 ANKLIKELNNLHSNPLG-----ATTESHGIIAKYMSNLGA-QVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGI 147 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~-----~~~~~~~~l~~~l~~lGl-e~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~ 147 (428)
+..+.++|-+..+.+.+ ......+||.++|+++|+ ++..+. .. ...
T Consensus 20 ~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~~--------------------------~~~ 71 (449)
T PRK07907 20 VRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVS--AD--------------------------GAP 71 (449)
T ss_pred HHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEe--cC--------------------------CCC
Confidence 44445555444443321 123578999999999997 665443 00 135
Q ss_pred eEEEEEcCCCCCCceEEEEEEeeccCC------------------------CCCcchhhHHHHHHHHHHHhcCCCCccce
Q 014238 148 NTVGIIRAPRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDI 203 (428)
Q Consensus 148 NvygilrApRgdgtEaiVL~ap~~~~~------------------------~~~~~~~gval~LaLa~yl~~~~~wAKDI 203 (428)
|+++.+++ +.+...+++..|+|... |..|...+++.++..++.+ ... ...+|
T Consensus 72 nl~a~~~~--~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~~~-~~~~i 147 (449)
T PRK07907 72 AVIGTRPA--PPGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-GGD-LPVGV 147 (449)
T ss_pred EEEEEecC--CCCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-ccC-CCCcE
Confidence 89998865 23457899988887431 3345567788888777777 333 35789
Q ss_pred EEEeeCCCCCCchhHHHHHHHh
Q 014238 204 IWLVADSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 204 Ifv~~D~~~~~~~G~~AWL~aY 225 (428)
.|+++..++.+..|++++++++
T Consensus 148 ~~~~~~dEE~g~~g~~~~l~~~ 169 (449)
T PRK07907 148 TVFVEGEEEMGSPSLERLLAEH 169 (449)
T ss_pred EEEEEcCcccCCccHHHHHHhc
Confidence 9999755554557999999986
No 29
>PRK13381 peptidase T; Provisional
Probab=96.65 E-value=0.021 Score=59.03 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238 93 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 172 (428)
Q Consensus 93 ~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~ 172 (428)
.+.++||.++|+++|+++.... .--||+|.+++. +++...|+|.+|+|.
T Consensus 31 ~~~~~~l~~~l~~~G~~~~~~~------------------------------~~~nvi~~~~g~-~~~~~~lll~~H~D~ 79 (404)
T PRK13381 31 HELAKLLADELRELGLEDIVID------------------------------EHAIVTAKLPGN-TPGAPRIGFIAHLDT 79 (404)
T ss_pred HHHHHHHHHHHHHcCCCcEEEc------------------------------CCeEEEEEEecC-CCCCCeEEEEEEecC
Confidence 3578999999999999633210 012999998652 223378999999876
Q ss_pred CC-------------------------------------------------CC----CcchhhHHHHHHHHHHHhcCCCC
Q 014238 173 VK-------------------------------------------------GG----VRETLSLGIAYSVFSLLTRVTWL 199 (428)
Q Consensus 173 ~~-------------------------------------------------~~----~~~~~gval~LaLa~yl~~~~~w 199 (428)
.. |. .|...|+|.++..++.+++....
T Consensus 80 Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~~~ 159 (404)
T PRK13381 80 VDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENEVE 159 (404)
T ss_pred CCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcCCC
Confidence 41 11 34456778888777778665545
Q ss_pred ccceEEEeeCCCCCCchhHHHHHHH
Q 014238 200 AKDIIWLVADSQYGEYAPVAAWLRD 224 (428)
Q Consensus 200 AKDIIfv~~D~~~~~~~G~~AWL~a 224 (428)
..||+|+|+-+++.+..|+++++.+
T Consensus 160 ~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 160 HGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CCCEEEEEEcccccccccHHHHHHh
Confidence 5699999975454455799999765
No 30
>PRK08262 hypothetical protein; Provisional
Probab=96.64 E-value=0.035 Score=58.96 Aligned_cols=138 Identities=13% Similarity=0.064 Sum_probs=83.7
Q ss_pred ccccccCCCcceeeecchhhHHHHHHHHHHHHhhhcCCCCCc--------hhhHHHHHHHHHHcCCceeeeecccCCCcC
Q 014238 51 YISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGAT--------TESHGIIAKYMSNLGAQVNNHKFHPQLNQF 122 (428)
Q Consensus 51 YisENALlPg~v~~~f~~~~~~~a~~y~~~l~~~~~~~~~~~--------~~~~~~l~~~l~~lGle~~~q~f~~~~~~f 122 (428)
-||--|.-| .-.+.++ +..+.+++-+..+.+.... ....+||.++|+++|+++..+..
T Consensus 30 ~~~~~~~~~----~~~~~~~---~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~------- 95 (486)
T PRK08262 30 QIDVPAVAP----VAVDEDA---AAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVV------- 95 (486)
T ss_pred CCCccccCC----CcCCHHH---HHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEE-------
Confidence 355555544 3233332 4455556555554433211 12678888888888887554431
Q ss_pred CCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccCC--------------------------CC
Q 014238 123 HPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVK--------------------------GG 176 (428)
Q Consensus 123 ~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~~--------------------------~~ 176 (428)
.|.|+++.++++ +.+...|++.+|+|... |.
T Consensus 96 ----------------------~~~~vv~~~~g~-~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~ 152 (486)
T PRK08262 96 ----------------------GGHSLLYTWKGS-DPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGA 152 (486)
T ss_pred ----------------------CCccEEEEEECC-CCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCc
Confidence 235777777552 22336799988887431 22
Q ss_pred CcchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCCCchhHHHHHHHh
Q 014238 177 VRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 177 ~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~~~~G~~AWL~aY 225 (428)
.|+..+++.+|..++++++.. -+.++|.|+|.=+++.+..|++.+++.+
T Consensus 153 ~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~l 202 (486)
T PRK08262 153 LDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAELL 202 (486)
T ss_pred cccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHHH
Confidence 334577888888888887654 4668999999744443445888887654
No 31
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=96.54 E-value=0.047 Score=55.88 Aligned_cols=129 Identities=12% Similarity=0.088 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhhcCCC----CCchhhHHHHHHHHHHcCCc-eeeeecccCCCcCCCcccccCCCCCccccCCccccccce
Q 014238 74 ANKLIKELNNLHSNPL----GATTESHGIIAKYMSNLGAQ-VNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGIN 148 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~----~~~~~~~~~l~~~l~~lGle-~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~N 148 (428)
+.++.++|-+..+.+. .......+||.++|+++|++ +..+...+.. + . .....|
T Consensus 7 ~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~-------------------~-~-~~~~~n 65 (400)
T PRK13983 7 MIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPR-------------------V-I-EGVRPN 65 (400)
T ss_pred HHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcc-------------------c-c-cCCCcc
Confidence 4455556555544321 11235689999999999998 6554321100 0 0 001479
Q ss_pred EEEEEcCCCCCCceEEEEEEeeccCCC------------------------CCcchhhHHHHHHHHHHHhcCC-CCccce
Q 014238 149 TVGIIRAPRGDGKEAIVLVTPYNAVKG------------------------GVRETLSLGIAYSVFSLLTRVT-WLAKDI 203 (428)
Q Consensus 149 vygilrApRgdgtEaiVL~ap~~~~~~------------------------~~~~~~gval~LaLa~yl~~~~-~wAKDI 203 (428)
+++.+++. ++...|+|.+|+|.... ..|+..|++.++..++.+.+.. -+-+||
T Consensus 66 l~~~~~g~--~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v 143 (400)
T PRK13983 66 IVAKIPGG--DGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNL 143 (400)
T ss_pred EEEEecCC--CCCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcE
Confidence 99998652 23348999999986421 1233567887776667776543 466899
Q ss_pred EEEeeCCCC-CCchhHHHHHHHh
Q 014238 204 IWLVADSQY-GEYAPVAAWLRDY 225 (428)
Q Consensus 204 Ifv~~D~~~-~~~~G~~AWL~aY 225 (428)
.|+|.-+++ +...|++.+++++
T Consensus 144 ~~~~~~dEE~g~~~g~~~~~~~~ 166 (400)
T PRK13983 144 GLAFVSDEETGSKYGIQYLLKKH 166 (400)
T ss_pred EEEEEeccccCCcccHHHHHhhc
Confidence 999974444 4445899998874
No 32
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=96.52 E-value=0.053 Score=56.27 Aligned_cols=130 Identities=15% Similarity=0.088 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhhcCC--CCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEE
Q 014238 73 EANKLIKELNNLHSNP--LGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTV 150 (428)
Q Consensus 73 ~a~~y~~~l~~~~~~~--~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvy 150 (428)
.+.++.++|-+..+.+ ........+||.++|+++|+++..+..... | . + .+ .....|++
T Consensus 15 ~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~-----~--~------~---~~---~~~~~nli 75 (427)
T PRK13013 15 DLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGA-----P--G------D---SE---TYPRWNLV 75 (427)
T ss_pred HHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCC-----C--c------c---cc---cCCcceEE
Confidence 3445555555554332 112236789999999999999876542110 0 0 0 00 12357999
Q ss_pred EEEcCCCCCCceEEEEEEeeccCC----------------------CCCcchhhHHHHHHHHHHHhcCCC-CccceEEEe
Q 014238 151 GIIRAPRGDGKEAIVLVTPYNAVK----------------------GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLV 207 (428)
Q Consensus 151 gilrApRgdgtEaiVL~ap~~~~~----------------------~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~ 207 (428)
|.+++. .+...|+|.+|+|... |..+...+++.+|..++.|++..+ +.++|+|++
T Consensus 76 a~~~g~--~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~ 153 (427)
T PRK13013 76 ARRQGA--RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISG 153 (427)
T ss_pred EEecCC--CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEE
Confidence 999642 3346799999987531 223345678888888888887543 468999999
Q ss_pred e-CCCCCCchhHHHHHH
Q 014238 208 A-DSQYGEYAPVAAWLR 223 (428)
Q Consensus 208 ~-D~~~~~~~G~~AWL~ 223 (428)
+ |.+.++..|.+.+++
T Consensus 154 ~~dEE~g~~~g~~~l~~ 170 (427)
T PRK13013 154 TADEESGGFGGVAYLAE 170 (427)
T ss_pred EeccccCChhHHHHHHh
Confidence 6 443333334444443
No 33
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=96.51 E-value=0.014 Score=60.81 Aligned_cols=82 Identities=9% Similarity=0.066 Sum_probs=62.1
Q ss_pred cccceEEEEEcCCCCCCc----------eEEEEEEeecc---CCCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCC
Q 014238 144 LYGINTVGIIRAPRGDGK----------EAIVLVTPYNA---VKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADS 210 (428)
Q Consensus 144 ~~G~NvygilrApRgdgt----------EaiVL~ap~~~---~~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~ 210 (428)
....|+.+...+. .-.. +.+++.+++++ ..|+.+|++|+|.+|.+||+|++.+ --++|.|++.++
T Consensus 182 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~~-p~~~v~f~~~~a 259 (435)
T COG2234 182 LTSKNVAATISGS-SQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGNP-PKRTVRFVAFGA 259 (435)
T ss_pred eEEEEEeeeeecc-cccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcCC-CCceEEEEEecc
Confidence 4556666666664 2233 44444445553 1467888999999999999999999 448999999999
Q ss_pred CCCCchhHHHHHHHhcC
Q 014238 211 QYGEYAPVAAWLRDYHT 227 (428)
Q Consensus 211 ~~~~~~G~~AWL~aYh~ 227 (428)
++.++.|.++++..+..
T Consensus 260 EE~Gl~GS~~~~~~~~~ 276 (435)
T COG2234 260 EESGLLGSEAYVKRLSK 276 (435)
T ss_pred hhhcccccHHHHhcCCc
Confidence 98889999999998875
No 34
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=96.49 E-value=0.024 Score=59.10 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
..++|+.++|+++|+++..-. . -|++|.+.+.. .+..+|++..|.|+.
T Consensus 34 ~a~~~~~~~~~~~Gl~v~~D~------------------------------~-gN~~~~~~g~~-~~~~~i~~gsHlDtv 81 (406)
T TIGR03176 34 AAQQQFKKRMAESGLETRFDD------------------------------V-GNLYGRLVGTE-FPEETILTGSHIDTV 81 (406)
T ss_pred HHHHHHHHHHHHcCCEEEEcC------------------------------C-CcEEEEecCCC-CCCCeEEEeccccCC
Confidence 467999999999999866221 1 39999998732 356799999999986
Q ss_pred C--CCCcchhhHHHHHHHHHHHhcC-CCCccceEEEeeCCCCCC-----chhHHHHH
Q 014238 174 K--GGVRETLSLGIAYSVFSLLTRV-TWLAKDIIWLVADSQYGE-----YAPVAAWL 222 (428)
Q Consensus 174 ~--~~~~~~~gval~LaLa~yl~~~-~~wAKDIIfv~~D~~~~~-----~~G~~AWL 222 (428)
. |..++..||..+|..++.++.. .-.-++|-++++=.+++. ..|.++|.
T Consensus 82 ~~gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~ 138 (406)
T TIGR03176 82 VNGGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIF 138 (406)
T ss_pred CCCCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHh
Confidence 3 4456688999999999999877 566688998886445544 67888886
No 35
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=96.47 E-value=0.051 Score=55.29 Aligned_cols=118 Identities=12% Similarity=0.020 Sum_probs=73.7
Q ss_pred HHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEc
Q 014238 75 NKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIR 154 (428)
Q Consensus 75 ~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygilr 154 (428)
.++.++|-+..+.+... ....+||.++|+++|+++..+.. . ...|+++.+
T Consensus 5 ~~~l~~Lv~ips~s~~e-~~~~~~l~~~l~~~G~~~~~~~~--~--------------------------~~~n~~~~~- 54 (375)
T PRK13009 5 LELAQDLIRRPSVTPDD-AGCQDLLAERLEALGFTCERMDF--G--------------------------DVKNLWARR- 54 (375)
T ss_pred HHHHHHHhCCCCCCCch-hhHHHHHHHHHHHcCCeEEEecc--C--------------------------CCcEEEEEe-
Confidence 34455555554433322 35789999999999998764431 0 124888876
Q ss_pred CCCCCCceEEEEEEeeccCCC------------------------CCcchhhHHHHHHHHHHH-hcCCCCccceEEEeeC
Q 014238 155 APRGDGKEAIVLVTPYNAVKG------------------------GVRETLSLGIAYSVFSLL-TRVTWLAKDIIWLVAD 209 (428)
Q Consensus 155 ApRgdgtEaiVL~ap~~~~~~------------------------~~~~~~gval~LaLa~yl-~~~~~wAKDIIfv~~D 209 (428)
+ .+...|++.+|+|.... ..|+..+++.++..++.+ +...-+.++|+|+++-
T Consensus 55 g---~~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~ 131 (375)
T PRK13009 55 G---TEGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITS 131 (375)
T ss_pred c---CCCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEe
Confidence 3 23467999999986421 113345777666555555 4444467899999964
Q ss_pred CCC-CCchhHHHHHHHh
Q 014238 210 SQY-GEYAPVAAWLRDY 225 (428)
Q Consensus 210 ~~~-~~~~G~~AWL~aY 225 (428)
+++ ++..|++.+++.+
T Consensus 132 ~EE~~~~~G~~~~~~~~ 148 (375)
T PRK13009 132 DEEGPAINGTVKVLEWL 148 (375)
T ss_pred ecccccccCHHHHHHHH
Confidence 444 3345888888765
No 36
>PRK07338 hypothetical protein; Provisional
Probab=96.45 E-value=0.059 Score=55.53 Aligned_cols=117 Identities=10% Similarity=0.078 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
...+||.++|+++|+++..+...... ....+ ....+ ...+.|+++.++. ++...++|..|+|..
T Consensus 41 ~~~~~l~~~l~~~G~~~~~~~~~~~~-------~~~~~-~~~~~-----~~~~~nl~a~~~~---~~~~~lll~gH~DvV 104 (402)
T PRK07338 41 RMAELLADAFAALPGEIELIPLPPVE-------VIDAD-GRTLE-----QAHGPALHVSVRP---EAPRQVLLTGHMDTV 104 (402)
T ss_pred HHHHHHHHHHHhCCCcEEEecCCccc-------ccccc-ccccc-----cCcCCeEEEEECC---CCCccEEEEeecCcc
Confidence 46889999999999997755421100 00000 00000 1245799999843 223369999998753
Q ss_pred C--------------------CCCcchhhHHHHHHHHHHHhcCCC-CccceEEEeeCCCCCCchhHHHHHHHhc
Q 014238 174 K--------------------GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 174 ~--------------------~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D~~~~~~~G~~AWL~aYh 226 (428)
- |..|...+++.+|+.++.|++... ...+|.|+|+-+++.+..|.+.++++..
T Consensus 105 p~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 178 (402)
T PRK07338 105 FPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLINPDEEIGSPASAPLLAELA 178 (402)
T ss_pred CCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEECCcccCChhhHHHHHHHh
Confidence 1 112334678888888888876543 4579999997444445578999998864
No 37
>PRK06837 acetylornithine deacetylase; Provisional
Probab=96.41 E-value=0.064 Score=56.06 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=77.6
Q ss_pred HHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcC
Q 014238 76 KLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRA 155 (428)
Q Consensus 76 ~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrA 155 (428)
++.++|-+..+.+.+ ..+.++||.++|+++|+++......... ....+..+... .....+.||++.+++
T Consensus 24 ~~l~~li~ipS~s~~-e~~~~~~l~~~l~~~G~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~nl~a~~~g 92 (427)
T PRK06837 24 AFTQDLVRFPSTRGA-EAPCQDFLARAFRERGYEVDRWSIDPDD-------LKSHPGAGPVE---IDYSGAPNVVGTYRP 92 (427)
T ss_pred HHHHHHhccCCCCCc-HHHHHHHHHHHHHHCCCceEEecCCHHH-------hhhcccccccc---cccCCCceEEEEecC
Confidence 344444444443322 2367899999999999997655422110 00000000000 001246899999975
Q ss_pred CCCCCceEEEEEEeeccCC------------------------CCCcchhhHHHHHHHHHHHhcCCC-CccceEEEeeCC
Q 014238 156 PRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADS 210 (428)
Q Consensus 156 pRgdgtEaiVL~ap~~~~~------------------------~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D~ 210 (428)
-. .+...|++.+|+|... |..|...+++.+|..++.+++... +..||+|+|+-.
T Consensus 93 ~~-~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~i~~~~~~d 171 (427)
T PRK06837 93 AG-KTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAARVHFQSVIE 171 (427)
T ss_pred CC-CCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEEec
Confidence 21 1235799999998541 233445678877777777876543 668999999743
Q ss_pred CCCCchhHHHHHH
Q 014238 211 QYGEYAPVAAWLR 223 (428)
Q Consensus 211 ~~~~~~G~~AWL~ 223 (428)
++.+..|+..-+.
T Consensus 172 EE~~g~g~~~~~~ 184 (427)
T PRK06837 172 EESTGNGALSTLQ 184 (427)
T ss_pred cccCCHhHHHHHh
Confidence 4433346555444
No 38
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=96.41 E-value=0.026 Score=61.85 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHcCC-ceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238 94 ESHGIIAKYMSNLGA-QVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 172 (428)
Q Consensus 94 ~~~~~l~~~l~~lGl-e~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~ 172 (428)
..++|+.++|+++|+ ++.... --|++|.++++. .+..+|++..|.|+
T Consensus 215 ~~~~~l~~~~~~~Gl~~v~~D~-------------------------------~GNl~~~~~g~~-~~~~~v~~gsHlDT 262 (591)
T PRK13590 215 ACAQQISHWMRDCGFDEVHIDA-------------------------------VGNVVGRYKGST-PQAKRLLTGSHYDT 262 (591)
T ss_pred HHHHHHHHHHHHcCCCeeeECC-------------------------------CCCEEEEecCCC-CCCCeEEEeccccc
Confidence 568999999999999 654221 148999988743 34578999999998
Q ss_pred C--CCCCcchhhHHHHHHHHHHHhcCCC-CccceEEEeeCCCCC-----CchhHHHH
Q 014238 173 V--KGGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYG-----EYAPVAAW 221 (428)
Q Consensus 173 ~--~~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D~~~~-----~~~G~~AW 221 (428)
. .|..+...||+.+|..++.|++... ..++|.||++=.+++ ...|.++|
T Consensus 263 V~~gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~ 319 (591)
T PRK13590 263 VRNGGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGAL 319 (591)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHH
Confidence 5 3446668999999999999987764 356999998644444 35677764
No 39
>PRK06915 acetylornithine deacetylase; Validated
Probab=96.35 E-value=0.07 Score=55.43 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
+.+++++|-+..+-+.+ .....+||.++|+++|+++..+.........+| .|... ..+ ...+.|+++.+
T Consensus 19 ~~~~l~~lv~ips~s~~-e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~--~~~~~-----~~~---~~~~~nlia~~ 87 (422)
T PRK06915 19 AVKLLKRLIQEKSVSGD-ESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHP--YFVSP-----RTS---FSDSPNIVATL 87 (422)
T ss_pred HHHHHHHHHhCCCCCcc-hHHHHHHHHHHHHhcCCeeEEeecchhhhhccc--ccCCc-----ccc---cCCCceEEEEE
Confidence 44555555555443322 235788999999999998766543211000000 00000 000 01358999999
Q ss_pred cCCCCCCceEEEEEEeeccCC------------------------CCCcchhhHHHHHHHHHHHhcCCC-CccceEEEee
Q 014238 154 RAPRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVA 208 (428)
Q Consensus 154 rApRgdgtEaiVL~ap~~~~~------------------------~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~ 208 (428)
++. +. ...|++.+|+|... |..|...+++.+|..++.+++..+ +..+|+|+++
T Consensus 88 ~g~-~~-~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~~~~ 165 (422)
T PRK06915 88 KGS-GG-GKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIFQSV 165 (422)
T ss_pred cCC-CC-CCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 642 22 35799999887531 112334577777777788877654 4579999996
Q ss_pred CCCCCCchhHHHHHHH
Q 014238 209 DSQYGEYAPVAAWLRD 224 (428)
Q Consensus 209 D~~~~~~~G~~AWL~a 224 (428)
=+++.+..|+.+.+.+
T Consensus 166 ~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 166 IEEESGGAGTLAAILR 181 (422)
T ss_pred cccccCCcchHHHHhc
Confidence 3333333576666553
No 40
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=96.24 E-value=0.067 Score=54.23 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
+.++.++|-+..+.+.+ .....+||.++|+++|+++.... ..|++|.+
T Consensus 8 ~~~~l~~Lv~i~s~s~~-e~~~~~~l~~~l~~~G~~~~~~~-------------------------------~~n~i~~~ 55 (348)
T PRK04443 8 ARELLKGLVEIPSPSGE-EAAAAEFLVEFMESHGREAWVDE-------------------------------AGNARGPA 55 (348)
T ss_pred HHHHHHHHHcCCCCCCC-hHHHHHHHHHHHHHcCCEEEEcC-------------------------------CCcEEEEc
Confidence 34455555555544332 23679999999999999875321 13777765
Q ss_pred cCCCCCCceEEEEEEeeccCC---------------CCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhH
Q 014238 154 RAPRGDGKEAIVLVTPYNAVK---------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPV 218 (428)
Q Consensus 154 rApRgdgtEaiVL~ap~~~~~---------------~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~ 218 (428)
+++...|++..|+|... |..|...+++.++..++.+ +. -+..||+|+++-+++.+..|.
T Consensus 56 ----~~~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~~-~~~~~i~~~~~~dEE~g~~~~ 129 (348)
T PRK04443 56 ----GDGPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-EA-LVRARVSFVGAVEEEAPSSGG 129 (348)
T ss_pred ----CCCCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-cc-cCCCCEEEEEEcccccCChhH
Confidence 23346899999998652 2234456788888777777 33 356799999974454445666
Q ss_pred HHHHHHhc
Q 014238 219 AAWLRDYH 226 (428)
Q Consensus 219 ~AWL~aYh 226 (428)
..++.+-.
T Consensus 130 ~~~l~~~~ 137 (348)
T PRK04443 130 ARLVADRE 137 (348)
T ss_pred HHHHHhcc
Confidence 77776543
No 41
>PRK05469 peptidase T; Provisional
Probab=96.23 E-value=0.059 Score=55.86 Aligned_cols=99 Identities=10% Similarity=0.053 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHHcCCc-eeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeec
Q 014238 93 TESHGIIAKYMSNLGAQ-VNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 171 (428)
Q Consensus 93 ~~~~~~l~~~l~~lGle-~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~ 171 (428)
....+||.++|+++|++ +... ..-||+|.+++....+...|+|.+|+|
T Consensus 32 ~~~a~~l~~~l~~~G~~~~~~~-------------------------------~~~~v~~~~~g~~~~~~~~i~l~~H~D 80 (408)
T PRK05469 32 WDLAKLLVEELKELGLQDVTLD-------------------------------ENGYVMATLPANVDKDVPTIGFIAHMD 80 (408)
T ss_pred HHHHHHHHHHHHHcCCCeEEEC-------------------------------CCeEEEEEecCCCCCCCCeEEEEEecc
Confidence 35689999999999996 3311 123799999663223458899999998
Q ss_pred cCC-------------------------------------------------CC----CcchhhHHHHHHHHHHHhcCC-
Q 014238 172 AVK-------------------------------------------------GG----VRETLSLGIAYSVFSLLTRVT- 197 (428)
Q Consensus 172 ~~~-------------------------------------------------~~----~~~~~gval~LaLa~yl~~~~- 197 (428)
..- |. .|...|+|.++..+++|++..
T Consensus 81 ~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~ 160 (408)
T PRK05469 81 TAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPE 160 (408)
T ss_pred CCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCC
Confidence 651 11 344678898998888887653
Q ss_pred CCccceEEEeeCCCCCCchhHHHHHH
Q 014238 198 WLAKDIIWLVADSQYGEYAPVAAWLR 223 (428)
Q Consensus 198 ~wAKDIIfv~~D~~~~~~~G~~AWL~ 223 (428)
-+..+|+|+|+=+++.+ .|+++++.
T Consensus 161 ~~~g~v~~~f~~dEE~g-~Ga~~~~~ 185 (408)
T PRK05469 161 IKHGDIRVAFTPDEEIG-RGADKFDV 185 (408)
T ss_pred CCCCCEEEEEecccccC-CCHHHhhh
Confidence 34569999997444444 68988864
No 42
>PRK09104 hypothetical protein; Validated
Probab=96.12 E-value=0.1 Score=55.05 Aligned_cols=104 Identities=10% Similarity=0.077 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
...+||.++|+++|+++..+.. ....||++.+++.. .+...++|..|+|..
T Consensus 44 ~~~~~l~~~l~~~G~~v~~~~~----------------------------~~~~~l~a~~~g~~-~~~~~lll~gH~DvV 94 (464)
T PRK09104 44 KAADWLVADLASLGFEASVRDT----------------------------PGHPMVVAHHEGPT-GDAPHVLFYGHYDVQ 94 (464)
T ss_pred HHHHHHHHHHHHCCCeEEEEec----------------------------CCCCEEEEEecCCC-CCCCEEEEEecccCC
Confidence 4689999999999998775531 01358999986522 245689999988752
Q ss_pred C-----------------------------CCCcchhhHHHHHHHHHHHhc-CCCCccceEEEeeCCCCCCchhHHHHHH
Q 014238 174 K-----------------------------GGVRETLSLGIAYSVFSLLTR-VTWLAKDIIWLVADSQYGEYAPVAAWLR 223 (428)
Q Consensus 174 ~-----------------------------~~~~~~~gval~LaLa~yl~~-~~~wAKDIIfv~~D~~~~~~~G~~AWL~ 223 (428)
. |..|+..+++.++..++-|++ ...+..+|+|+|+-.++.+..|+++|+.
T Consensus 95 p~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~ 174 (464)
T PRK09104 95 PVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEEESGSPSLVPFLE 174 (464)
T ss_pred CCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccCCccHHHHHH
Confidence 1 112334678888877777765 3456779999997444445579999998
Q ss_pred Hhc
Q 014238 224 DYH 226 (428)
Q Consensus 224 aYh 226 (428)
+..
T Consensus 175 ~~~ 177 (464)
T PRK09104 175 ANA 177 (464)
T ss_pred hhH
Confidence 764
No 43
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=96.06 E-value=0.048 Score=59.79 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHcCCc-eeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238 94 ESHGIIAKYMSNLGAQ-VNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 172 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle-~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~ 172 (428)
..++|+.++|+++|++ +.+.. --||+|.++++. .+..++++..|.|+
T Consensus 215 ~~~~~~~~~~~~~Gl~~v~~D~-------------------------------~gNv~~~~~g~~-~~~p~v~~gSHlDT 262 (591)
T PRK13799 215 ACANQISDWMRDAGFDEVEIDA-------------------------------VGNVVGRYKAAD-DDAKTLITGSHYDT 262 (591)
T ss_pred HHHHHHHHHHHHcCCCeEeECC-------------------------------CCCEEEEcCCCC-CCCCeEEEeccccc
Confidence 4689999999999997 76432 148999987642 34568999999997
Q ss_pred C--CCCCcchhhHHHHHHHHHHHhcCCC-CccceEEEeeCCCCC-----CchhHHHHH
Q 014238 173 V--KGGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYG-----EYAPVAAWL 222 (428)
Q Consensus 173 ~--~~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D~~~~-----~~~G~~AWL 222 (428)
. .|..+...||+.+|..++.|+.... ..++|.++..=.+++ ...|.++|.
T Consensus 263 V~~gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13799 263 VRNGGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGSGALI 320 (591)
T ss_pred cCCCCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccchHHHh
Confidence 5 3456668899999999999987654 567999998633444 467888886
No 44
>PRK08201 hypothetical protein; Provisional
Probab=96.00 E-value=0.11 Score=54.67 Aligned_cols=103 Identities=9% Similarity=0.077 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHcCCc-eeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238 94 ESHGIIAKYMSNLGAQ-VNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 172 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle-~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~ 172 (428)
+..+||.++|+++|++ +..+.. -...||++.+.+ +.+...++|..|+|.
T Consensus 41 ~~a~~l~~~l~~~G~~~~~~~~~----------------------------~~~~~l~a~~~~--~~~~~~lll~gH~Dv 90 (456)
T PRK08201 41 KAAEWLAGALEKAGLEHVEIMET----------------------------AGHPIVYADWLH--APGKPTVLIYGHYDV 90 (456)
T ss_pred HHHHHHHHHHHHcCCCeEEEEec----------------------------CCCCEEEEEecC--CCCCCEEEEEeccCC
Confidence 5689999999999997 443321 012488887754 123456999998876
Q ss_pred CC------------------------CCCcchhhHHHHHHHHHHHhc-CCCCccceEEEeeCCCCCCchhHHHHHHHhc
Q 014238 173 VK------------------------GGVRETLSLGIAYSVFSLLTR-VTWLAKDIIWLVADSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 173 ~~------------------------~~~~~~~gval~LaLa~yl~~-~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh 226 (428)
.. |..|...+++.+++.++.+.+ ...+..+|+|+++-.++.+..|+..|++++.
T Consensus 91 Vp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 169 (456)
T PRK08201 91 QPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGSPNLDSFVEEEK 169 (456)
T ss_pred cCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCCccHHHHHHhhH
Confidence 21 223446788888877777754 3345669999997445445578999998753
No 45
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=95.99 E-value=0.056 Score=54.38 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=72.4
Q ss_pred HHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCC
Q 014238 79 KELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRG 158 (428)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRg 158 (428)
++|-+..+.+.. ..+..+||.++|+++|+++... ...|+++.. +
T Consensus 4 ~~lv~i~s~s~~-e~~~~~~l~~~l~~~g~~~~~~-------------------------------~~~~~~~~~----~ 47 (336)
T TIGR01902 4 KDLLEIYSPSGK-EANAAKFLEEISKDLGLKLIID-------------------------------DAGNFILGK----G 47 (336)
T ss_pred HHHhcCCCCCcc-hHHHHHHHHHHHHHcCCEEEEC-------------------------------CCCcEEEEe----C
Confidence 344444433322 3467999999999999987311 012666643 2
Q ss_pred CCceEEEEEEeeccC---------------CCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHH
Q 014238 159 DGKEAIVLVTPYNAV---------------KGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLR 223 (428)
Q Consensus 159 dgtEaiVL~ap~~~~---------------~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~ 223 (428)
.+...|++..|+|.. .|..|...++|.++..++.|++.. .||+|+++-+++.+..|++..++
T Consensus 48 ~~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~~---~~i~~~~~~dEE~g~~G~~~~~~ 124 (336)
T TIGR01902 48 DGHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEKG---IKVIVSGLVDEESSSKGAREVID 124 (336)
T ss_pred CCCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhCC---CcEEEEEEeCcccCCccHHHHHh
Confidence 334679999999864 133455678888887777787655 48999996445455679999998
Q ss_pred Hhc
Q 014238 224 DYH 226 (428)
Q Consensus 224 aYh 226 (428)
.+.
T Consensus 125 ~~~ 127 (336)
T TIGR01902 125 KNY 127 (336)
T ss_pred hcC
Confidence 753
No 46
>PRK07205 hypothetical protein; Provisional
Probab=95.95 E-value=0.12 Score=54.29 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
+..+|+.++|+++|+++..+. .|.++++.. +++...|+|..|+|..
T Consensus 42 ~~~~~~~~~l~~~g~~~~~~~------------------------------~~~~~~~~~----g~~~~~lll~gH~DvV 87 (444)
T PRK07205 42 DVLEATLDLCQGLGFKTYLDP------------------------------KGYYGYAEI----GQGEELLAILCHLDVV 87 (444)
T ss_pred HHHHHHHHHHHhCCCEEEEcC------------------------------CCeEEEEEe----cCCCcEEEEEEeeccC
Confidence 357788899999999866431 122343332 3445679999988753
Q ss_pred C------------------------CCCcchhhHHHHHHHHHHHhcC-CCCccceEEEeeCCCCCCchhHHHHHHHh
Q 014238 174 K------------------------GGVRETLSLGIAYSVFSLLTRV-TWLAKDIIWLVADSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 174 ~------------------------~~~~~~~gval~LaLa~yl~~~-~~wAKDIIfv~~D~~~~~~~G~~AWL~aY 225 (428)
. |..|...+++.+|..++.+++. .-+.++|.|+|+=+++.+..|+++|++.+
T Consensus 88 p~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~ 164 (444)
T PRK07205 88 PEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVE 164 (444)
T ss_pred CCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcccHHHHHhCC
Confidence 1 2234456787777555566544 45678999999744444457999999864
No 47
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=95.91 E-value=0.083 Score=53.42 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEE
Q 014238 73 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 152 (428)
Q Consensus 73 ~a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygi 152 (428)
.+.++..+|-+..+.+ +....+.+||.++|+++|+++.... ..|++.
T Consensus 11 ~~~~~l~~lv~i~s~s-~~e~~~~~~l~~~l~~~g~~~~~~~-------------------------------~~~~~~- 57 (346)
T PRK00466 11 KAKELLLDLLSIYTPS-GNETNATKFFEKISNELNLKLEILP-------------------------------DSNSFI- 57 (346)
T ss_pred HHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHHcCCeEEEec-------------------------------CCCcEe-
Confidence 3455566666555433 3334689999999999999866432 113331
Q ss_pred EcCCCCCCceEEEEEEeeccC---------------CCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchh
Q 014238 153 IRAPRGDGKEAIVLVTPYNAV---------------KGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAP 217 (428)
Q Consensus 153 lrApRgdgtEaiVL~ap~~~~---------------~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G 217 (428)
.+ ...++|..|+|.. .|..|...++|.+++.++.+++.. ..++|+++=+++.+..|
T Consensus 58 -~g-----~~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~---~~i~~~~~~dEE~g~~G 128 (346)
T PRK00466 58 -LG-----EGDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG---IKVMVSGLADEESTSIG 128 (346)
T ss_pred -cC-----CCeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC---CCEEEEEEcCcccCCcc
Confidence 21 2359999998875 344566788888887788887765 25888886444445579
Q ss_pred HHHHHHHh
Q 014238 218 VAAWLRDY 225 (428)
Q Consensus 218 ~~AWL~aY 225 (428)
++++++..
T Consensus 129 ~~~l~~~~ 136 (346)
T PRK00466 129 AKELVSKG 136 (346)
T ss_pred HHHHHhcC
Confidence 99999864
No 48
>PRK13004 peptidase; Reviewed
Probab=95.88 E-value=0.18 Score=52.17 Aligned_cols=116 Identities=10% Similarity=0.023 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
+.++.++|-+....+.. ....++||.++|+++|+++.... ...|+++.+
T Consensus 17 ~~~~l~~lv~ips~s~~-e~~~a~~l~~~l~~~G~~~~~~~------------------------------~~~n~~a~~ 65 (399)
T PRK13004 17 MTRFLRDLIRIPSESGD-EKRVVKRIKEEMEKVGFDKVEID------------------------------PMGNVLGYI 65 (399)
T ss_pred HHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHHcCCcEEEEc------------------------------CCCeEEEEE
Confidence 34444455444443332 23578999999999999742110 123788887
Q ss_pred cCCCCCCceEEEEEEeeccCCC------------------------CCcchhhHHHHHHHHHHHhcCCC-CccceEEEee
Q 014238 154 RAPRGDGKEAIVLVTPYNAVKG------------------------GVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVA 208 (428)
Q Consensus 154 rApRgdgtEaiVL~ap~~~~~~------------------------~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~ 208 (428)
.+ +...|++.+|+|.... ..|+..+++.+|+.++.+++... +.++|+|+++
T Consensus 66 ~~----~~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~ 141 (399)
T PRK13004 66 GH----GKKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGT 141 (399)
T ss_pred CC----CCcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEE
Confidence 53 2267999999875421 11334788989988888977643 5789999996
Q ss_pred CCCC-CCchhHHHHHHH
Q 014238 209 DSQY-GEYAPVAAWLRD 224 (428)
Q Consensus 209 D~~~-~~~~G~~AWL~a 224 (428)
-+++ ++..|.+.++++
T Consensus 142 ~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 142 VQEEDCDGLCWRYIIEE 158 (399)
T ss_pred cccccCcchhHHHHHHh
Confidence 4333 333567777775
No 49
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=95.79 E-value=0.15 Score=52.68 Aligned_cols=109 Identities=20% Similarity=0.224 Sum_probs=76.8
Q ss_pred chhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeec
Q 014238 92 TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 171 (428)
Q Consensus 92 ~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~ 171 (428)
...+.+|+.++|+++|+++....+... . ...|+++...++.++ +.++|..|+|
T Consensus 33 ~~~~~~~l~~~l~~~g~~~~~~~~~~~------------------------~-~~~n~~~~~~~~~~~--~~l~l~~H~D 85 (409)
T COG0624 33 EAEAAELLAEWLEELGFEVEEDEVGPG------------------------P-GRPNLVARLGGGDGG--PTLLLGGHLD 85 (409)
T ss_pred chHHHHHHHHHHHHcCCceEEeecCCC------------------------C-CceEEEEEecCCCCC--CeEEEecccc
Confidence 346899999999999998776554210 0 235999998875333 9999999997
Q ss_pred cCC------------------------CCCcchhhHHHHHHHHHHHhc-CCCCccceEEEeeCCCCCCchhHHHHHHHhc
Q 014238 172 AVK------------------------GGVRETLSLGIAYSVFSLLTR-VTWLAKDIIWLVADSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 172 ~~~------------------------~~~~~~~gval~LaLa~yl~~-~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh 226 (428)
..- |..|+..+++..+..++-+.. ...+.++|.++++-.++.+..|+.+|+....
T Consensus 86 vVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~ 165 (409)
T COG0624 86 VVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGE 165 (409)
T ss_pred ccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHHhcc
Confidence 531 223445667666655555544 6777899999997444445589999999987
Q ss_pred C
Q 014238 227 T 227 (428)
Q Consensus 227 ~ 227 (428)
.
T Consensus 166 ~ 166 (409)
T COG0624 166 E 166 (409)
T ss_pred h
Confidence 4
No 50
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=95.76 E-value=0.11 Score=53.16 Aligned_cols=128 Identities=11% Similarity=0.093 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhhcCCC--CCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEE
Q 014238 74 ANKLIKELNNLHSNPL--GATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVG 151 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~--~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvyg 151 (428)
+.++.++|-+..+.+. +...+..+||.++|+++|+++..+...... .+.. .....|+++
T Consensus 8 ~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~------------------~~~~-~~~~~~~~~ 68 (394)
T PRK08651 8 IVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEY------------------VKKH-DGPRPNLIA 68 (394)
T ss_pred HHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccc------------------cccc-cCCcceEEE
Confidence 4455556555554331 222367899999999999987765431100 0000 011356776
Q ss_pred EEcCCCCCCceEEEEEEeeccCC-----------------------CCCcchhhHHHHHHHHHHHhcCCCCccceEEEee
Q 014238 152 IIRAPRGDGKEAIVLVTPYNAVK-----------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVA 208 (428)
Q Consensus 152 ilrApRgdgtEaiVL~ap~~~~~-----------------------~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~ 208 (428)
.. +.+...|+|.+|+|... |..++..+++.+|+.++.+++.. .++|.|+|.
T Consensus 69 ~~----~~~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~--~~~v~~~~~ 142 (394)
T PRK08651 69 RR----GSGNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG--DGNIELAIV 142 (394)
T ss_pred Ee----CCCCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC--CCCEEEEEe
Confidence 43 23336899999887431 11233567899998889997765 789999997
Q ss_pred CCCCCCchhHHHHHHHhc
Q 014238 209 DSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 209 D~~~~~~~G~~AWL~aYh 226 (428)
-+++.+..|+++++++..
T Consensus 143 ~~EE~g~~G~~~~~~~~~ 160 (394)
T PRK08651 143 PDEETGGTGTGYLVEEGK 160 (394)
T ss_pred cCccccchhHHHHHhccC
Confidence 555544479999998654
No 51
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=95.68 E-value=0.13 Score=51.75 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHc-CCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNL-GAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 152 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~l-Gle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygi 152 (428)
+..+.++|-+..+.+.+ .....+||.++|+++ |+++.. .+.|+++.
T Consensus 9 ~~~~l~~li~ips~s~~-e~~~~~~l~~~l~~~~~~~~~~--------------------------------~~~~~~~~ 55 (352)
T PRK13007 9 LAELTAALVDIPSVSGD-EKALADAVEAALRALPHLEVIR--------------------------------HGNSVVAR 55 (352)
T ss_pred HHHHHHHHhcCCCCCch-HHHHHHHHHHHHHhCcCceEEe--------------------------------cCCeEEEE
Confidence 44555555555544332 235789999999996 665321 23588888
Q ss_pred EcCCCCCCceEEEEEEeeccC-----------------CCCCcchhhHHHHHHHHHHHhcCCCCccceEEEee-CCCCCC
Q 014238 153 IRAPRGDGKEAIVLVTPYNAV-----------------KGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVA-DSQYGE 214 (428)
Q Consensus 153 lrApRgdgtEaiVL~ap~~~~-----------------~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~-D~~~~~ 214 (428)
+.. +.+ ..|+|.+|+|.. .|..|...++|.+|++++.+.. ..++|.|+|+ |.+.++
T Consensus 56 ~~~--~~~-~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~---~~~~i~~~~~~~EE~~~ 129 (352)
T PRK13007 56 TDL--GRP-SRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLAE---PAHDLTLVFYDCEEVEA 129 (352)
T ss_pred ccC--CCC-CeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhhc---cCCCeEEEEEecccccC
Confidence 732 222 269999998753 1334556789999988888843 4679999996 443322
Q ss_pred -chhHHHHHHHh
Q 014238 215 -YAPVAAWLRDY 225 (428)
Q Consensus 215 -~~G~~AWL~aY 225 (428)
..|++..++.+
T Consensus 130 ~~~G~~~~~~~~ 141 (352)
T PRK13007 130 EANGLGRLAREH 141 (352)
T ss_pred CcccHHHHHHhc
Confidence 25888877653
No 52
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=95.65 E-value=0.23 Score=51.19 Aligned_cols=120 Identities=10% Similarity=-0.011 Sum_probs=75.5
Q ss_pred HHHHHHHhhhcCCCC-CchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEc
Q 014238 76 KLIKELNNLHSNPLG-ATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIR 154 (428)
Q Consensus 76 ~y~~~l~~~~~~~~~-~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygilr 154 (428)
.+.++|-+..+.+.. ...+..+||.++|+++|+++...... ..+.|+++.++
T Consensus 13 ~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~---------------------------~g~~~l~~~~~ 65 (400)
T TIGR01880 13 TRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFV---------------------------PGKPVVVLTWP 65 (400)
T ss_pred HHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEec---------------------------CCceeEEEEEe
Confidence 445555555544322 12467999999999999987644310 02458888886
Q ss_pred CCCCCC-ceEEEEEEeeccCC------------------------CCCcchhhHHHHHHHHHHHhcCC-CCccceEEEee
Q 014238 155 APRGDG-KEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVA 208 (428)
Q Consensus 155 ApRgdg-tEaiVL~ap~~~~~------------------------~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~ 208 (428)
+. ++ .-.|+|.+|+|... |..|...+++.++..++.+++.. -+.++|.|+|+
T Consensus 66 g~--~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~ 143 (400)
T TIGR01880 66 GS--NPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFV 143 (400)
T ss_pred cC--CCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEe
Confidence 51 22 13699988886431 11233456777777777776643 45689999997
Q ss_pred CCCCC-CchhHHHHHHH
Q 014238 209 DSQYG-EYAPVAAWLRD 224 (428)
Q Consensus 209 D~~~~-~~~G~~AWL~a 224 (428)
-+++. +..|++..+++
T Consensus 144 ~dEE~g~~~G~~~~~~~ 160 (400)
T TIGR01880 144 PDEEIGGHDGMEKFAKT 160 (400)
T ss_pred CCcccCcHhHHHHHHHh
Confidence 55543 34699988765
No 53
>PLN02693 IAA-amino acid hydrolase
Probab=95.52 E-value=0.21 Score=52.80 Aligned_cols=118 Identities=9% Similarity=0.109 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEE
Q 014238 73 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 152 (428)
Q Consensus 73 ~a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygi 152 (428)
....++++|.....-+..+ .+..++|.++|+++|+++.. . ..++|++|+
T Consensus 48 ~~~~~r~~lh~~PE~s~~E-~~ta~~i~~~L~~~G~~~~~-~-----------------------------~~~~~via~ 96 (437)
T PLN02693 48 WMVRIRRKIHENPELGYEE-FETSKLIRSELDLIGIKYRY-P-----------------------------VAITGIIGY 96 (437)
T ss_pred HHHHHHHHHHhCCCCCCch-HHHHHHHHHHHHHCCCeeEe-c-----------------------------CCCcEEEEE
Confidence 3556667776666544443 36789999999999998541 1 125799999
Q ss_pred EcCCCCCCceEEEEEEeeccCCCC-----------------CcchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCCC
Q 014238 153 IRAPRGDGKEAIVLVTPYNAVKGG-----------------VRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGE 214 (428)
Q Consensus 153 lrApRgdgtEaiVL~ap~~~~~~~-----------------~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~~ 214 (428)
+.+ +++ -.|++.+++|..-.. -+--.++|.+++.++.|++.. .+..+|.|+|+-++++
T Consensus 97 ~g~--~~g-~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~- 172 (437)
T PLN02693 97 IGT--GEP-PFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEG- 172 (437)
T ss_pred ECC--CCC-CEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccc-
Confidence 843 122 579999998864210 011236788888899997754 4677999999755553
Q ss_pred chhHHHHHHHh
Q 014238 215 YAPVAAWLRDY 225 (428)
Q Consensus 215 ~~G~~AWL~aY 225 (428)
..|.+.++++.
T Consensus 173 ~~Ga~~~i~~g 183 (437)
T PLN02693 173 LSGAKKMREEG 183 (437)
T ss_pred hhhHHHHHHCC
Confidence 36899998864
No 54
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=95.49 E-value=0.04 Score=61.35 Aligned_cols=83 Identities=11% Similarity=0.147 Sum_probs=65.3
Q ss_pred cccceEEEEEcCCCCCCceEEEEEEeeccCC-CCCcchhhHHHHHHHHHHHh-----cCCCCccceEEEeeCCCCCCchh
Q 014238 144 LYGINTVGIIRAPRGDGKEAIVLVTPYNAVK-GGVRETLSLGIAYSVFSLLT-----RVTWLAKDIIWLVADSQYGEYAP 217 (428)
Q Consensus 144 ~~G~NvygilrApRgdgtEaiVL~ap~~~~~-~~~~~~~gval~LaLa~yl~-----~~~~wAKDIIfv~~D~~~~~~~G 217 (428)
..=.||+|.+++ +..-.-.|||.+|.|++. |+.+.++|.|+++.++++|. .|... |.|+|..-|+++.++.|
T Consensus 336 ~ki~NIig~I~G-s~epD~~ViigahrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~-RtI~F~sWdAeEfGliG 413 (702)
T KOG2195|consen 336 TKIQNIIGKIEG-SEEPDRYVIIGAHRDSWTFGAIDPNSGTALLLEIARALSKLKKRGWRPR-RTILFASWDAEEFGLLG 413 (702)
T ss_pred eeeeeEEEEEec-CcCCCeEEEEeccccccccCCcCCCccHHHHHHHHHHHHHHHHcCCCcc-ceEEEEEccchhccccc
Confidence 456799999998 345566888888988864 45555788998888888774 23444 88999999999989999
Q ss_pred HHHHHHHhcCC
Q 014238 218 VAAWLRDYHTP 228 (428)
Q Consensus 218 ~~AWL~aYh~~ 228 (428)
.-.|+++|-..
T Consensus 414 StE~~E~~~~~ 424 (702)
T KOG2195|consen 414 STEWAEEYLKN 424 (702)
T ss_pred cHHHHHHHHHH
Confidence 99999999764
No 55
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=95.22 E-value=0.72 Score=49.49 Aligned_cols=117 Identities=11% Similarity=0.128 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
.-++.++|-+..+.+ .....+.+||.++++++|+++.... --|+++..
T Consensus 12 ~~~~l~~Lv~ips~S-~~e~~~~~~l~~~~~~~G~~~~~d~-------------------------------~gnvi~~~ 59 (485)
T PRK15026 12 LWDIFAKICSIPHPS-YHEEQLAEYIVGWAKEKGFHVERDQ-------------------------------VGNILIRK 59 (485)
T ss_pred HHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHhCCCEEEEEe-------------------------------cCeEEEEE
Confidence 344555665555433 2334689999999999999866431 12777776
Q ss_pred cCCCC-CCceEEEEEEeeccCC---------------------------CC---CcchhhHHHHHHHHHHHhcCCCCccc
Q 014238 154 RAPRG-DGKEAIVLVTPYNAVK---------------------------GG---VRETLSLGIAYSVFSLLTRVTWLAKD 202 (428)
Q Consensus 154 rApRg-dgtEaiVL~ap~~~~~---------------------------~~---~~~~~gval~LaLa~yl~~~~~wAKD 202 (428)
++..+ .+...++|.+|+|..- |. .++..|+|.+|+++ +.......+
T Consensus 60 ~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~~~~~ 136 (485)
T PRK15026 60 PATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---ADENVVHGP 136 (485)
T ss_pred cCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhCCCCCCC
Confidence 65333 3456788888776431 11 13345566665544 333344679
Q ss_pred eEEEeeCCCCCCchhHHHHHHHh
Q 014238 203 IIWLVADSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 203 IIfv~~D~~~~~~~G~~AWL~aY 225 (428)
|.++|+-+++-+..|++++...+
T Consensus 137 i~~l~t~dEE~G~~ga~~l~~~~ 159 (485)
T PRK15026 137 LEVLLTMTEEAGMDGAFGLQSNW 159 (485)
T ss_pred EEEEEEcccccCcHhHHHhhhcc
Confidence 99999755555667888875533
No 56
>PRK07318 dipeptidase PepV; Reviewed
Probab=95.13 E-value=0.29 Score=51.85 Aligned_cols=97 Identities=15% Similarity=0.258 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
...+||.++|+++|+++.... |+.+.++. +.+...|+|..|.|..
T Consensus 47 ~~~~~l~~~~~~~G~~~~~~~---------------------------------n~~~~~~~--~~~~~~l~l~gH~DvV 91 (466)
T PRK07318 47 KALEKFLEIAERDGFKTKNVD---------------------------------NYAGHIEY--GEGEEVLGILGHLDVV 91 (466)
T ss_pred HHHHHHHHHHHHCCCEEEEec---------------------------------CccceEEE--CCCCCEEEEEEecCCC
Confidence 578999999999999865331 22332221 2333457776665532
Q ss_pred ----------------------CCCCcchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCCCchhHHHHHHHh
Q 014238 174 ----------------------KGGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 174 ----------------------~~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~~~~G~~AWL~aY 225 (428)
.|..|...+++.++..++.+++.. -+.++|.|+|+=+++.+..|++.+++.+
T Consensus 92 p~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~~G~~~l~~~~ 166 (466)
T PRK07318 92 PAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGWKCMDYYFEHE 166 (466)
T ss_pred CCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCchhHHHHHHhC
Confidence 133444567887776667776543 4567999999633443457999999875
No 57
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=95.04 E-value=0.31 Score=49.65 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=72.3
Q ss_pred HHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCC
Q 014238 77 LIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAP 156 (428)
Q Consensus 77 y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrAp 156 (428)
+..+|-...+.+.. ..+..+||.++|+++|+++.... ....|+++.+.+.
T Consensus 4 ~~~~L~~ips~s~~-E~~~a~~l~~~l~~~g~~~~~~~-----------------------------~~~~~vva~~~~~ 53 (363)
T TIGR01891 4 IRRHLHEHPELSFE-EFKTSSLIAEALESLGIEVRRGV-----------------------------GGATGVVATIGGG 53 (363)
T ss_pred HHHHHhcCCCCCCc-hHHHHHHHHHHHHHcCCceEecC-----------------------------CCCcEEEEEEeCC
Confidence 44555555543332 34789999999999999865310 0236889887542
Q ss_pred CCCCceEEEEEEeeccCCC-------------CC----cchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCCCchhH
Q 014238 157 RGDGKEAIVLVTPYNAVKG-------------GV----RETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPV 218 (428)
Q Consensus 157 RgdgtEaiVL~ap~~~~~~-------------~~----~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~~~~G~ 218 (428)
++.-.|+|.+|+|..-. +. ....++|.+++.++.+++.. -+-++|.|+|+-+++.+ .|+
T Consensus 54 --~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~ 130 (363)
T TIGR01891 54 --KPGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGG-GGA 130 (363)
T ss_pred --CCCCEEEEEeccCCCCcccccCCCcccCCCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCc-chH
Confidence 12257999999886421 00 00134677777777776543 24479999997444433 699
Q ss_pred HHHHHH
Q 014238 219 AAWLRD 224 (428)
Q Consensus 219 ~AWL~a 224 (428)
+.++++
T Consensus 131 ~~~~~~ 136 (363)
T TIGR01891 131 TKMIED 136 (363)
T ss_pred HHHHHC
Confidence 888875
No 58
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=95.03 E-value=0.48 Score=48.89 Aligned_cols=116 Identities=11% Similarity=0.044 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
...+.++|-+..+-+.+ .....+||.++|+++|+++.... ...|+++.+
T Consensus 15 ~~~~l~~Lv~ips~s~~-e~~~~~~l~~~l~~~g~~~~~~~------------------------------~~~~v~~~~ 63 (395)
T TIGR03526 15 MIRFLRDLVAIPSESGD-EGRVALRIKQEMEKLGFDKVEID------------------------------PMGNVLGYI 63 (395)
T ss_pred HHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHHcCCceEEEc------------------------------CCCcEEEEe
Confidence 33445555544443322 23578999999999998742110 013788887
Q ss_pred cCCCCCCceEEEEEEeeccCC------------------------CCCcchhhHHHHHHHHHHHhcCCC-CccceEEEee
Q 014238 154 RAPRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVA 208 (428)
Q Consensus 154 rApRgdgtEaiVL~ap~~~~~------------------------~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~ 208 (428)
. ++...|++.+|+|... |..|...+++.+|..++.+++..+ +.++++|+++
T Consensus 64 g----~~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~ 139 (395)
T TIGR03526 64 G----HGPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGT 139 (395)
T ss_pred C----CCCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEe
Confidence 2 3446799988887431 112334668888877777876654 4568988887
Q ss_pred CCCC-CCchhHHHHHHH
Q 014238 209 DSQY-GEYAPVAAWLRD 224 (428)
Q Consensus 209 D~~~-~~~~G~~AWL~a 224 (428)
..++ ..-.|.+.++++
T Consensus 140 ~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 140 VQEEDCDGLCWQYIIEE 156 (395)
T ss_pred cccccCCcHhHHHHHhc
Confidence 4444 222455666654
No 59
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=94.70 E-value=0.47 Score=48.27 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=68.8
Q ss_pred HHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCC
Q 014238 78 IKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPR 157 (428)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApR 157 (428)
.++|-+..+.+.+ ....++||.++|+++|+++..++.. ...|+++.. .
T Consensus 5 l~~lv~ips~s~~-e~~~~~~i~~~l~~~G~~~~~~~~~----------------------------~~~~~~~~~-g-- 52 (370)
T TIGR01246 5 AKELISRPSVTPN-DAGCQDIIAERLEKLGFEIEWMHFG----------------------------DTKNLWATR-G-- 52 (370)
T ss_pred HHHHhcCCCCCcc-hHHHHHHHHHHHHHCCCEEEEEecC----------------------------CCceEEEEe-c--
Confidence 4444444443332 2357899999999999997655420 124788863 2
Q ss_pred CCCceEEEEEEeeccCCC------------------------CCcchhhHHHHH-HHHHHHhcCCCCccceEEEeeCCCC
Q 014238 158 GDGKEAIVLVTPYNAVKG------------------------GVRETLSLGIAY-SVFSLLTRVTWLAKDIIWLVADSQY 212 (428)
Q Consensus 158 gdgtEaiVL~ap~~~~~~------------------------~~~~~~gval~L-aLa~yl~~~~~wAKDIIfv~~D~~~ 212 (428)
.+...|++.+|+|.... ..|...+++.++ ++.++++....+.++|+|+|.-+++
T Consensus 53 -~~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE 131 (370)
T TIGR01246 53 -TGEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEE 131 (370)
T ss_pred -CCCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccc
Confidence 24467999988875311 113334555544 5555555555677899999964444
Q ss_pred C-CchhHHHHHH
Q 014238 213 G-EYAPVAAWLR 223 (428)
Q Consensus 213 ~-~~~G~~AWL~ 223 (428)
. +..|++..++
T Consensus 132 ~~~~~G~~~~~~ 143 (370)
T TIGR01246 132 GTAIDGTKKVVE 143 (370)
T ss_pred cCCCcCHHHHHH
Confidence 3 2357777765
No 60
>PRK08554 peptidase; Reviewed
Probab=94.56 E-value=0.65 Score=48.99 Aligned_cols=98 Identities=15% Similarity=0.228 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
+..+|+.++|+++|+++..+... ...|+++.+. .+.+.|+|..|+|..
T Consensus 28 ~~~~~l~~~l~~~G~~~~~~~~~----------------------------~~~~l~~~~~----~~~~~l~l~gH~DtV 75 (438)
T PRK08554 28 ECPKFIKDTLESWGIESELIEKD----------------------------GYYAVYGEIG----EGKPKLLFMAHFDVV 75 (438)
T ss_pred HHHHHHHHHHHHCCCeEEEEecC----------------------------CceEEEEEeC----CCCCEEEEEeccccC
Confidence 57899999999999987654310 1247777752 234579998888743
Q ss_pred C-----------------------CCCcchhhHHHHHHHHHHHhcCCCCccceEEEee-CCCCCCchhHHHHHHHh
Q 014238 174 K-----------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVA-DSQYGEYAPVAAWLRDY 225 (428)
Q Consensus 174 ~-----------------------~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~-D~~~~~~~G~~AWL~aY 225 (428)
. |..|...+++.++..++.|++.. +.++|.|+++ |.+.+. .+...+++.+
T Consensus 76 p~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~~-~~~~i~l~~~~dEE~g~-~~~~~~~~~~ 149 (438)
T PRK08554 76 PVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKEP-LNGKVIFAFTGDEEIGG-AMAMHIAEKL 149 (438)
T ss_pred CCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccCc-cccHHHHHHH
Confidence 1 22334567888887778887655 5689999996 544333 3333444443
No 61
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=94.43 E-value=0.14 Score=53.70 Aligned_cols=80 Identities=19% Similarity=0.356 Sum_probs=60.1
Q ss_pred cccceEEEEEc-CCC--CCC--ceEEEEEEeeccC-------CCCCcchhhHHHHHHHHHHHhcC----CCC-ccceEEE
Q 014238 144 LYGINTVGIIR-APR--GDG--KEAIVLVTPYNAV-------KGGVRETLSLGIAYSVFSLLTRV----TWL-AKDIIWL 206 (428)
Q Consensus 144 ~~G~Nvygilr-ApR--gdg--tEaiVL~ap~~~~-------~~~~~~~~gval~LaLa~yl~~~----~~w-AKDIIfv 206 (428)
..=.||.|.+. +-| ||| --.|+++|+||.- -|++.|.+|+..+|-|++.|++- +-. .-++.|+
T Consensus 191 ~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~ 270 (555)
T KOG2526|consen 191 YKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFI 270 (555)
T ss_pred CccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEE
Confidence 34579999998 666 333 4579999999863 35566788998899999999752 122 3589999
Q ss_pred eeCCCCCCchhHHHHHH
Q 014238 207 VADSQYGEYAPVAAWLR 223 (428)
Q Consensus 207 ~~D~~~~~~~G~~AWL~ 223 (428)
.+++.--.++|.+-||+
T Consensus 271 lt~aG~lNyqGTkkWLe 287 (555)
T KOG2526|consen 271 LTAAGKLNYQGTKKWLE 287 (555)
T ss_pred EccCccccccchhhhhh
Confidence 99875446799999999
No 62
>PRK07079 hypothetical protein; Provisional
Probab=94.12 E-value=0.9 Score=48.10 Aligned_cols=126 Identities=10% Similarity=-0.007 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhcCCCC--CchhhHHHH----HHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccc
Q 014238 74 ANKLIKELNNLHSNPLG--ATTESHGII----AKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGI 147 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~--~~~~~~~~l----~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~ 147 (428)
+..+.++|-+..+.+.. ...+.++|+ .++|+++|+++....... .-...
T Consensus 19 ~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~-------------------------~~~~~ 73 (469)
T PRK07079 19 FFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPV-------------------------AGGGP 73 (469)
T ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCC-------------------------CCCCC
Confidence 33445555554443321 112445555 568999999977654210 01246
Q ss_pred eEEEEEcCCCCCCceEEEEEEeeccCC-------------------------CCCcchhhHHHHHHHHHHHhc-C-CCCc
Q 014238 148 NTVGIIRAPRGDGKEAIVLVTPYNAVK-------------------------GGVRETLSLGIAYSVFSLLTR-V-TWLA 200 (428)
Q Consensus 148 NvygilrApRgdgtEaiVL~ap~~~~~-------------------------~~~~~~~gval~LaLa~yl~~-~-~~wA 200 (428)
||++.+.+ +.+...++|..|+|... |..|...+++.+++.++.+.+ . .-+.
T Consensus 74 ~vva~~~~--~~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~ 151 (469)
T PRK07079 74 FLIAERIE--DDALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLG 151 (469)
T ss_pred EEEEEeCC--CCCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCC
Confidence 89988743 12235799988887321 223445777777766666543 2 3456
Q ss_pred cceEEEeeCCCCCCchhHHHHHHHhc
Q 014238 201 KDIIWLVADSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 201 KDIIfv~~D~~~~~~~G~~AWL~aYh 226 (428)
.+|+|+++-.++.+..|++.+++++.
T Consensus 152 ~~i~~~~~~dEE~g~~G~~~l~~~~~ 177 (469)
T PRK07079 152 FNVKLLIEMGEEIGSPGLAEVCRQHR 177 (469)
T ss_pred CCEEEEEECccccCCccHHHHHHHhH
Confidence 79999997555555679999999874
No 63
>PLN02280 IAA-amino acid hydrolase
Probab=93.84 E-value=1.1 Score=48.09 Aligned_cols=97 Identities=9% Similarity=0.122 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238 93 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 172 (428)
Q Consensus 93 ~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~ 172 (428)
.+..+||.++|+++|+++..+ ..++|++|++ +. +.+ ..|++.+++|.
T Consensus 117 ~~t~~~i~~~L~~~G~~~~~~------------------------------~~~~~vva~~-g~-~~~-~~I~l~gh~Da 163 (478)
T PLN02280 117 YKTSELVRSELDRMGIMYRYP------------------------------LAKTGIRAWI-GT-GGP-PFVAVRADMDA 163 (478)
T ss_pred HHHHHHHHHHHHHCCCeEEec------------------------------CCCCEEEEEE-CC-CCC-CEEEEEEecCC
Confidence 357899999999999986532 1256999987 31 222 67999998875
Q ss_pred CCCC------------------CcchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCCCchhHHHHHHH
Q 014238 173 VKGG------------------VRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRD 224 (428)
Q Consensus 173 ~~~~------------------~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~~~~G~~AWL~a 224 (428)
.-.. ..+ .++|.++++++++++.. -+.-+|+|+|+-+++.+ .|.++-+++
T Consensus 164 VP~~e~~~w~~~p~~~G~~h~cGhd-~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g-~Ga~~li~~ 232 (478)
T PLN02280 164 LPIQEAVEWEHKSKVAGKMHACGHD-AHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAG-NGAKRMIGD 232 (478)
T ss_pred CcccCCCCCCCCCCCCCeEEeCCCc-HHHHHHHHHHHHHHhccccCCceEEEEeccccccc-chHHHHHHC
Confidence 3110 111 36788888889997543 34569999997555544 488888875
No 64
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=93.78 E-value=1.2 Score=45.83 Aligned_cols=116 Identities=11% Similarity=0.041 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
+.++.++|-+..+.+.+ .....+||.++|+++|+++. +.. ...|++|.+
T Consensus 15 ~~~~~~~lv~i~s~s~~-e~~~~~~l~~~l~~~G~~~~-~~~-----------------------------~~~n~~~~~ 63 (395)
T TIGR03320 15 MIRFLRDLVAIPSESGD-EKRVAERIKEEMEKLGFDKV-EID-----------------------------PMGNVLGYI 63 (395)
T ss_pred HHHHHHHHHcCCCCCCc-hHHHHHHHHHHHHHhCCcEE-EEC-----------------------------CCCCEEEEe
Confidence 34445555544443322 23678999999999999732 110 013788876
Q ss_pred cCCCCCCceEEEEEEeeccCC------------------------CCCcchhhHHHHHHHHHHHhcCC-CCccceEEEee
Q 014238 154 RAPRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVA 208 (428)
Q Consensus 154 rApRgdgtEaiVL~ap~~~~~------------------------~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~ 208 (428)
. .+...+++.+|+|... |..|...++|.++..++.+++.. .+..+|+|+++
T Consensus 64 g----~~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~ 139 (395)
T TIGR03320 64 G----HGPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGT 139 (395)
T ss_pred C----CCCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEec
Confidence 2 2335688988887431 22233567888888778887654 35568888886
Q ss_pred CCCC-CCchhHHHHHHH
Q 014238 209 DSQY-GEYAPVAAWLRD 224 (428)
Q Consensus 209 D~~~-~~~~G~~AWL~a 224 (428)
.+++ ++-.+++..+++
T Consensus 140 ~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 140 VQEEDCDGLCWQYIIEE 156 (395)
T ss_pred ccccccCchHHHHHHHh
Confidence 4333 222344555543
No 65
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=93.16 E-value=1.1 Score=47.49 Aligned_cols=97 Identities=15% Similarity=0.252 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC-
Q 014238 95 SHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV- 173 (428)
Q Consensus 95 ~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~- 173 (428)
..+|+.++|+++|+++..+. |++|.+.. +++...+++..|+|..
T Consensus 47 ~~~~~~~~~~~~G~~~~~~~---------------------------------~~~~~~~~--~~~~~~l~~~gH~DvVp 91 (466)
T TIGR01886 47 ALTKFLSFAERDGFTTKNFD---------------------------------NYAGHVEY--GAGDERLGIIGHMDVVP 91 (466)
T ss_pred HHHHHHHHHHHCCCeEEEec---------------------------------CCceeEEe--cCCCCEEEEEeecccCC
Confidence 56688999999999876432 01111111 2345678888887653
Q ss_pred ---------------------CCCCcchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCCCchhHHHHHHHhc
Q 014238 174 ---------------------KGGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 174 ---------------------~~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~~~~G~~AWL~aYh 226 (428)
.|..|+..+++.++..++.+++.. -+.++|.|++.-.++.+..|++.+++...
T Consensus 92 ~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 92 AGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred CCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCcccHHHHHhcCc
Confidence 133445566776665566666543 56789999996444445679999998543
No 66
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=92.30 E-value=2.3 Score=45.11 Aligned_cols=98 Identities=15% Similarity=0.217 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeeccC
Q 014238 94 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 94 ~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~~ 173 (428)
+..+||.++|+++|+++.... |+.++.. .+.+...|+|..|+|..
T Consensus 35 ~~~~~l~~~~~~~g~~~~~~~---------------------------------~~~~~~~--~~~~~~~l~l~gH~D~V 79 (447)
T TIGR01887 35 KALDKFLELAKRDGFTTENVD---------------------------------NYAGYAE--YGQGEEYLGILGHLDVV 79 (447)
T ss_pred HHHHHHHHHHHHcCceEEEec---------------------------------CceEEEE--eCCCCCeEEEEeecCCC
Confidence 578899999999999865211 2222222 12334578888777643
Q ss_pred ----------------------CCCCcchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCCCchhHHHHHHHhc
Q 014238 174 ----------------------KGGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 174 ----------------------~~~~~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~~~~G~~AWL~aYh 226 (428)
.|..+...+++.++..++.|++.. -+..+|.|+++=+++.+..|++.+++..+
T Consensus 80 p~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 155 (447)
T TIGR01887 80 PAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWACIDYYFEHEE 155 (447)
T ss_pred CCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcHhHHHHHHhcC
Confidence 122344456777776667776544 34679999997445556779999998643
No 67
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=91.77 E-value=0.99 Score=46.80 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=46.0
Q ss_pred CCCceEEEEEEeeccCCCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhcC
Q 014238 158 GDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHT 227 (428)
Q Consensus 158 gdgtEaiVL~ap~~~~~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~ 227 (428)
|...|-|+|+++.-+-.-+-||.+|++++..||+++++.+-. -..=|||.- +-.|.-+||....+
T Consensus 126 G~s~~EillsthiCHPsmANdnLSG~~v~~~La~~L~~~~~r-ytYRflf~P----eTIGsI~yLskn~~ 190 (386)
T PF09940_consen 126 GESDEEILLSTHICHPSMANDNLSGPAVLTFLAKWLKQLPNR-YTYRFLFVP----ETIGSITYLSKNLD 190 (386)
T ss_dssp -SSS-EEEEEEE----S-TTTTHHHHHHHHHHHHHHTTS--S-SEEEEEEE-----TTHHHHHHHHH-GG
T ss_pred CCCCCeEEEEEeccCcccccccccHHHHHHHHHHHHhcCCcC-ceEEEEEcc----ccHHHHHHHHHCHH
Confidence 699999999999876555667789999999999999887666 777788754 34899999996543
No 68
>PRK06156 hypothetical protein; Provisional
Probab=91.61 E-value=6.1 Score=42.65 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=35.4
Q ss_pred cchhhHHHHHHHHHHHhcCC-CCccceEEEeeCCCCCCchhHHHHHHHhcCC
Q 014238 178 RETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDYHTP 228 (428)
Q Consensus 178 ~~~~gval~LaLa~yl~~~~-~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~~ 228 (428)
+...+++.++..++.+.+.. -+.++|.|+|+=+++.+..|++.|+++++.+
T Consensus 154 D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~~~ 205 (520)
T PRK06156 154 DDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYTPP 205 (520)
T ss_pred cchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCchhHHHHHHhcCCC
Confidence 44567887766666776543 3567999999644444557999999988653
No 69
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=91.52 E-value=1.5 Score=45.00 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHHcCCc-eeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeec
Q 014238 93 TESHGIIAKYMSNLGAQ-VNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 171 (428)
Q Consensus 93 ~~~~~~l~~~l~~lGle-~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~ 171 (428)
.++.+||.++|+++|.+ +..+ ..+.||++.+.+ +. ...|+|..|+|
T Consensus 16 ~~~~~~i~~~l~~~g~~~~~~~------------------------------~~~~nvva~~~~--~~-~~~l~l~gH~D 62 (373)
T TIGR01900 16 GPIADEIEAALNNLELEGLEVF------------------------------RFGDNVLARTDF--GK-ASRVILAGHID 62 (373)
T ss_pred HHHHHHHHHHHhhccccCceEE------------------------------EECCEEEEecCC--CC-CCeEEEeCccc
Confidence 35789999999998754 1111 123489988643 22 24699988776
Q ss_pred cCC----------------------------------CCCcchhhHHHHHHHHHHHhc---CCCCccceEEEeeCCCCC-
Q 014238 172 AVK----------------------------------GGVRETLSLGIAYSVFSLLTR---VTWLAKDIIWLVADSQYG- 213 (428)
Q Consensus 172 ~~~----------------------------------~~~~~~~gval~LaLa~yl~~---~~~wAKDIIfv~~D~~~~- 213 (428)
... |..|...|+|.+|+.++.+.. ..-+..||.|+++..++.
T Consensus 63 tVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~ 142 (373)
T TIGR01900 63 TVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVA 142 (373)
T ss_pred cccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEeccccc
Confidence 431 112334678888877777732 234678999999755543
Q ss_pred -CchhHHHHHHHh
Q 014238 214 -EYAPVAAWLRDY 225 (428)
Q Consensus 214 -~~~G~~AWL~aY 225 (428)
+..|++.+++.+
T Consensus 143 ~~~~G~~~~~~~~ 155 (373)
T TIGR01900 143 AEKNGLGHIRDAH 155 (373)
T ss_pred CCCCCHHHHHHhC
Confidence 235999998864
No 70
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=2 Score=42.98 Aligned_cols=97 Identities=14% Similarity=0.281 Sum_probs=65.0
Q ss_pred chhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeec
Q 014238 92 TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 171 (428)
Q Consensus 92 ~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~ 171 (428)
...+++||++.|+.+|-.+..+.|+... | + + ...=.|+++-+.. ...+-+||..+||
T Consensus 71 ~~~vr~~i~~~l~~l~w~ve~~~f~~~t----p-----------~---g--~~~f~nii~tl~~---~A~r~lVlachyd 127 (338)
T KOG3946|consen 71 SRQVRRFIIQHLRNLGWAVETDAFTDNT----P-----------L---G--TRNFNNLIATLDP---NASRYLVLACHYD 127 (338)
T ss_pred cHHHHHHHHHHHHhcCceeeeccccccC----c-----------c---e--eeeeeeEEEecCC---Ccchheeeecccc
Confidence 3478999999999999999888876431 1 1 0 2333577777765 6788999999999
Q ss_pred cCC-------CCCcchhhHHHHHHHHHHHhcC--CCCcc---ceEEEeeCCC
Q 014238 172 AVK-------GGVRETLSLGIAYSVFSLLTRV--TWLAK---DIIWLVADSQ 211 (428)
Q Consensus 172 ~~~-------~~~~~~~gval~LaLa~yl~~~--~~wAK---DIIfv~~D~~ 211 (428)
+.- ++.+.+-.-|+++-+|+.+.+. +-.+| -+.+||.|++
T Consensus 128 sk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGE 179 (338)
T KOG3946|consen 128 SKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGE 179 (338)
T ss_pred cccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccH
Confidence 752 2233233457777777766432 12333 4788999986
No 71
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=89.75 E-value=17 Score=37.68 Aligned_cols=102 Identities=9% Similarity=0.072 Sum_probs=67.2
Q ss_pred CcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhcCCCCCCCCCCcccccccCCCCccccccccc
Q 014238 177 VRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGI 256 (428)
Q Consensus 177 ~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
.+|..|+++++.+++.++ ..-...|+.||++=+++-++-|++.-....- ++
T Consensus 179 lDdR~gva~lle~lk~l~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~i~--------------------------pd-- 229 (355)
T COG1363 179 LDDRAGVAALLELLKELK-GIELPADVYFVASVQEEVGLRGAKTSAFRIK--------------------------PD-- 229 (355)
T ss_pred ccchHhHHHHHHHHHHhc-cCCCCceEEEEEecchhhccchhhccccccC--------------------------CC--
Confidence 456789999999999995 6667799999999887666666655422111 01
Q ss_pred cchhhheeeeEEeecCCCCCc------------ceEEEEeecCCCCCCChhHHHHHHHHHhhccCceeeeeehh
Q 014238 257 RRSGTMAAALVLGVAYGNENE------------DTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFH 318 (428)
Q Consensus 257 ~raG~IqaAl~Le~~~~~~~~------------~~l~I~~eG~NGqLPNLDLiN~v~~la~~~~gi~v~l~~~~ 318 (428)
.||++|....++.. -.|.++ -++-.-|-+|..-+..+|. +.++++.+.-.+
T Consensus 230 -------~aiavd~~~~~d~~~~~~~~~~lg~Gp~i~~~---D~~~~~~~~l~~~L~~~A~-~~~Ip~Q~~v~~ 292 (355)
T COG1363 230 -------IAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVK---DASGIYHPKLRKFLLELAE-KNNIPYQVDVSP 292 (355)
T ss_pred -------EEEEEecccccCCCCCcccccccCCCCEEEEE---cCCCCCCHHHHHHHHHHHH-HcCCCeEEEecC
Confidence 45666655443311 112222 2334448999999999997 578999886544
No 72
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=87.92 E-value=9 Score=40.79 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhhcCCCC-CchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEE
Q 014238 72 SEANKLIKELNNLHSNPLG-ATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTV 150 (428)
Q Consensus 72 ~~a~~y~~~l~~~~~~~~~-~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvy 150 (428)
..++++.-+|-.+.+-..+ +.....++|...|.++ .|.|.= |-..+..+ ..|- .+.-.||+
T Consensus 8 e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~---pYFqeh--------ped~~~~p-----i~nD--pygR~nv~ 69 (553)
T COG4187 8 ERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGEL---PYFQEH--------PEDLWLQP-----IHND--PYGRRNVF 69 (553)
T ss_pred HHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcC---chhhhC--------hHhhcccC-----CCCC--ccccceeE
Confidence 3466666666655544322 2224677777776665 454441 11111110 0111 23457999
Q ss_pred EEEcCCCCCCceEEEEEEeeccCC---------------------------------------------CCCcchhhHHH
Q 014238 151 GIIRAPRGDGKEAIVLVTPYNAVK---------------------------------------------GGVRETLSLGI 185 (428)
Q Consensus 151 gilrApRgdgtEaiVL~ap~~~~~---------------------------------------------~~~~~~~gval 185 (428)
|.+|+ +.++-.+|+..|||... |..+=.+|+|+
T Consensus 70 AlVrg--~~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav 147 (553)
T COG4187 70 ALVRG--GTSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAV 147 (553)
T ss_pred EEEec--CCCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHH
Confidence 99999 78889999999997641 11222467888
Q ss_pred HHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhcC
Q 014238 186 AYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHT 227 (428)
Q Consensus 186 ~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~ 227 (428)
.||..+-|....-..=|+.|+..-.++-+..||++=+.+--.
T Consensus 148 ~la~L~~fa~~~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~ 189 (553)
T COG4187 148 HLACLEEFAARTDRQGNLLFMAVPDEEVESRGMREARPALPG 189 (553)
T ss_pred HHHHHHHHhhCCCCCCcEEEEeccchhhhcccHHHHHHHHHH
Confidence 887777776668888999999854444567888887665543
No 73
>PRK08737 acetylornithine deacetylase; Provisional
Probab=85.39 E-value=11 Score=38.54 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhhcCCCC---CchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEE
Q 014238 74 ANKLIKELNNLHSNPLG---ATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTV 150 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~---~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvy 150 (428)
+.++.++|-+..+.+.. ...+..+||.++|+ |+++...... ....|++
T Consensus 8 ~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~---------------------------~~~~nli 58 (364)
T PRK08737 8 TLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHG---------------------------AGAVSLY 58 (364)
T ss_pred HHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCC---------------------------CCceEEE
Confidence 44566666555543211 12357889999996 8876544310 0125888
Q ss_pred EEEcCCCCCCceEEEEEEeeccCC----------------------CCCcchhhHHHHHHHHHHHhcCCCCccceEEEee
Q 014238 151 GIIRAPRGDGKEAIVLVTPYNAVK----------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVA 208 (428)
Q Consensus 151 gilrApRgdgtEaiVL~ap~~~~~----------------------~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~ 208 (428)
+.. + ...++|..|.|... |..|...++|.+++.++. .-.||.|+++
T Consensus 59 ~~~----g--~~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~------~~~~v~~~~~ 126 (364)
T PRK08737 59 AVR----G--TPKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA------GDGDAAFLFS 126 (364)
T ss_pred EEc----C--CCeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc------cCCCEEEEEE
Confidence 752 2 24699999887632 122323667766655542 2368999997
Q ss_pred CCCCCC-chhHHHHHHHhc
Q 014238 209 DSQYGE-YAPVAAWLRDYH 226 (428)
Q Consensus 209 D~~~~~-~~G~~AWL~aYh 226 (428)
-.++.+ ..|++.+++...
T Consensus 127 ~dEE~g~~~g~~~~~~~~~ 145 (364)
T PRK08737 127 SDEEANDPRCVAAFLARGI 145 (364)
T ss_pred cccccCchhhHHHHHHhCC
Confidence 444433 368899988643
No 74
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=85.34 E-value=4 Score=36.74 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=38.9
Q ss_pred CCCCcchhhHHHHHHHHHHHh-cCCCCccceEEEeeCCCCCCch-hHHHHHHH
Q 014238 174 KGGVRETLSLGIAYSVFSLLT-RVTWLAKDIIWLVADSQYGEYA-PVAAWLRD 224 (428)
Q Consensus 174 ~~~~~~~~gval~LaLa~yl~-~~~~wAKDIIfv~~D~~~~~~~-G~~AWL~a 224 (428)
.|..+...+++.+++.++.++ ...-+..+|+|+|+=.++.+.. |++.++++
T Consensus 32 rG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~l~~~ 84 (189)
T PF01546_consen 32 RGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKHLLEE 84 (189)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHHHHHH
T ss_pred CCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhhhhhh
Confidence 355555778888888888775 5677889999999755554555 99999998
No 75
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=83.63 E-value=5.5 Score=40.02 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=66.2
Q ss_pred CcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhcCCCCCCCCCCcccccccCCCCccccccccc
Q 014238 177 VRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGI 256 (428)
Q Consensus 177 ~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
.+|..|+++++.+++.+++...- .|+.|+|+=+++-+..|++.-.... .|.
T Consensus 133 lDdR~g~~~lle~l~~l~~~~~~-~~v~~v~tvqEEvG~rGA~~aa~~i-~PD--------------------------- 183 (292)
T PF05343_consen 133 LDDRAGCAVLLELLRELKEKELD-VDVYFVFTVQEEVGLRGAKTAAFRI-KPD--------------------------- 183 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS-S-SEEEEEEESSCTTTSHHHHHHHHHH--CS---------------------------
T ss_pred CCchhHHHHHHHHHHHHhhcCCC-ceEEEEEEeeeeecCcceeeccccc-CCC---------------------------
Confidence 34478999999999999886554 9999999987776777766543332 121
Q ss_pred cchhhheeeeEEeecCCCCC--cce--------EEEEeecCCCCCCChhHHHHHHHHHhhccCceeeee
Q 014238 257 RRSGTMAAALVLGVAYGNEN--EDT--------LGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVE 315 (428)
Q Consensus 257 ~raG~IqaAl~Le~~~~~~~--~~~--------l~I~~eG~NGqLPNLDLiN~v~~la~~~~gi~v~l~ 315 (428)
.||++|.....+. .+. .-| .-+-.+.+||-.|.+-+..+|+ +.|+++...
T Consensus 184 -------~ai~vD~~~a~d~~~~~~~~~~lG~Gp~i-~~~D~~~i~~~~l~~~l~~~A~-~~~Ip~Q~~ 243 (292)
T PF05343_consen 184 -------IAIAVDVTPAGDTPGSDEKEQGLGKGPVI-RVGDSSMIPNPKLVDKLREIAE-ENGIPYQRE 243 (292)
T ss_dssp -------EEEEEEEEEESSSTTSTTTTSCTTS-EEE-EEEETTEESHHHHHHHHHHHHH-HTT--EEEE
T ss_pred -------EEEEEeeeccCCCCCCchhhccCCCCcEE-EEccCCCCCCHHHHHHHHHHHH-HcCCCeEEE
Confidence 4566665433221 111 122 2344558899999999999997 568998875
No 76
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=80.36 E-value=31 Score=36.44 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=67.1
Q ss_pred Cch-hhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCC-CceEEEEEE
Q 014238 91 ATT-ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGD-GKEAIVLVT 168 (428)
Q Consensus 91 ~~~-~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgd-gtEaiVL~a 168 (428)
... .+++++..+.+.+|+.+..=+..+ ..-.++|.+. + +| .--+|||++
T Consensus 45 dy~~a~~~Fl~~~a~~l~l~~~~i~~~p--------------------------~~~~~l~T~~-G--S~P~L~silL~S 95 (420)
T KOG2275|consen 45 DYTIACADFLKKYAKSLGLTVQKIESEP--------------------------GKYVLLYTWL-G--SDPELPSILLNS 95 (420)
T ss_pred CccHHHHHHHHHHHHhcCCceeEEEecC--------------------------ceeEEEEEee-C--CCCCccceeeec
Confidence 344 789999999999999873222111 1112233332 2 23 567899998
Q ss_pred eeccC------------------------CCCCcc-hhhHHHHHHHHHHHhcCCCCccceEEEe-eCCCCCCchhHHHHH
Q 014238 169 PYNAV------------------------KGGVRE-TLSLGIAYSVFSLLTRVTWLAKDIIWLV-ADSQYGEYAPVAAWL 222 (428)
Q Consensus 169 p~~~~------------------------~~~~~~-~~gval~LaLa~yl~~~~~wAKDIIfv~-~D~~~~~~~G~~AWL 222 (428)
|.|-. .|+-|. ..++|.+=|+-..+.+---|.|+|+++| +|.+-++..||+-|.
T Consensus 96 H~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa 175 (420)
T KOG2275|consen 96 HTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFA 175 (420)
T ss_pred cccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHh
Confidence 76532 111121 2455666677777766555889999999 587778899999999
Q ss_pred H
Q 014238 223 R 223 (428)
Q Consensus 223 ~ 223 (428)
+
T Consensus 176 ~ 176 (420)
T KOG2275|consen 176 K 176 (420)
T ss_pred h
Confidence 8
No 77
>PRK09961 exoaminopeptidase; Provisional
Probab=76.73 E-value=24 Score=36.17 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=68.2
Q ss_pred CcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhcCCCCCCCCCCcccccccCCCCccccccccc
Q 014238 177 VRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGI 256 (428)
Q Consensus 177 ~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
.+|..|+++++.+++.++..+ ...|++|+++..++-+..|++.-..... | +
T Consensus 165 lDnR~g~~~lle~l~~l~~~~-~~~~v~~~~tvqEEvG~rGa~~aa~~i~-p--------------------------d- 215 (344)
T PRK09961 165 FDDRLGCYLLVTLLRELHDAE-LPAEVWLVASSSEEVGLRGGQTATRAVS-P--------------------------D- 215 (344)
T ss_pred chhhHhHHHHHHHHHHhhhcC-CCceEEEEEEcccccchHHHHHHHhccC-C--------------------------C-
Confidence 456789999999999887554 5799999999998877788776633211 1 0
Q ss_pred cchhhheeeeEEeecCCCCCcc-----------eEEEEeecCCCCCCChhHHHHHHHHHhhccCceeeeee
Q 014238 257 RRSGTMAAALVLGVAYGNENED-----------TLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQ 316 (428)
Q Consensus 257 ~raG~IqaAl~Le~~~~~~~~~-----------~l~I~~eG~NGqLPNLDLiN~v~~la~~~~gi~v~l~~ 316 (428)
.||++|+....+..+ -+-|..- -.|.++|-.++..+..+|. +.++++.+..
T Consensus 216 -------~~I~vDv~~~~d~~~~~~~~~~~lg~Gp~i~~~-D~~~i~~~~l~~~l~~~A~-~~~Ip~Q~~~ 277 (344)
T PRK09961 216 -------VAIVLDTACWAKNFDYGAANHRQIGNGPMLVLS-DKSLIAPPKLTAWIETVAA-EIGIPLQADM 277 (344)
T ss_pred -------EEEEEeccCCCCCCCCCCCcccccCCCceEEEc-cCCcCCCHHHHHHHHHHHH-HcCCCcEEEe
Confidence 356666553222111 1112111 2388999999999999997 5678877743
No 78
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=72.08 E-value=28 Score=35.91 Aligned_cols=100 Identities=6% Similarity=-0.040 Sum_probs=68.4
Q ss_pred CcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhcCCCCCCCCCCcccccccCCCCccccccccc
Q 014238 177 VRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGI 256 (428)
Q Consensus 177 ~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
.+|..|+++++.+++.+++.+ ...|++++|+=+++-+..|++. .+|+-.. +
T Consensus 177 lDdR~g~a~l~e~l~~l~~~~-~~~~l~~~~tvqEEvG~rGA~~--aa~~i~p------------------------D-- 227 (350)
T TIGR03107 177 WDNRYGVLMILELLESLKDQE-LPNTLIAGANVQEEVGLRGAHV--STTKFNP------------------------D-- 227 (350)
T ss_pred cccHHHHHHHHHHHHHhhhcC-CCceEEEEEEChhhcCchhhhh--HHhhCCC------------------------C--
Confidence 456789999999999998664 4689999999776666677664 4554320 1
Q ss_pred cchhhheeeeEEeecCCCCCcc--------eEEEEeecCCCCCCChhHHHHHHHHHhhccCceeee
Q 014238 257 RRSGTMAAALVLGVAYGNENED--------TLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKV 314 (428)
Q Consensus 257 ~raG~IqaAl~Le~~~~~~~~~--------~l~I~~eG~NGqLPNLDLiN~v~~la~~~~gi~v~l 314 (428)
.||+||+....+.+. -.-|. -.-.|-.+|-.|...+..+|. +.|+++.+
T Consensus 228 -------~aI~vDv~~~~d~~~~~~~~lg~Gp~i~-~~D~~~i~~~~l~~~l~~~A~-~~~I~~Q~ 284 (350)
T TIGR03107 228 -------IFFAVDCSPAGDIYGDQGGKLGEGTLLR-FFDPGHIMLPRMKDFLLTTAE-EAGIKYQY 284 (350)
T ss_pred -------EEEEEecCCcCCCCCCCccccCCCceEE-EecCCCCCCHHHHHHHHHHHH-HcCCCcEE
Confidence 467777654433111 12221 113489999999999999997 57899887
No 79
>PRK09864 putative peptidase; Provisional
Probab=71.81 E-value=29 Score=36.00 Aligned_cols=100 Identities=12% Similarity=0.156 Sum_probs=66.9
Q ss_pred CcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhcCCCCCCCCCCcccccccCCCCccccccccc
Q 014238 177 VRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGI 256 (428)
Q Consensus 177 ~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
.+|..|+++++.+++.++. ...|++|+|+=+++-++.|++.= +|.-. ++
T Consensus 174 lDnR~g~~~lle~l~~l~~---~~~~vy~v~TvQEEvGlrGA~~a--a~~i~------------------------PD-- 222 (356)
T PRK09864 174 LDNRIGCAMMAELLQTVNN---PEITLYGVGSVEEEVGLRGAQTS--AEHIK------------------------PD-- 222 (356)
T ss_pred CccHHHHHHHHHHHHHhhc---CCCeEEEEEEcchhcchHHHHHH--HhcCC------------------------CC--
Confidence 4567899999999999866 66999999997766566666543 33221 01
Q ss_pred cchhhheeeeEEeecCCCCCc--ce----E------EE-EeecCCCCCCChhHHHHHHHHHhhccCceeeeeeh
Q 014238 257 RRSGTMAAALVLGVAYGNENE--DT----L------GI-YAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQF 317 (428)
Q Consensus 257 ~raG~IqaAl~Le~~~~~~~~--~~----l------~I-~~eG~NGqLPNLDLiN~v~~la~~~~gi~v~l~~~ 317 (428)
.||++|+....+.+ .. + -| .+ -.|-++|-.|.+.+..+|. +.|+|+.+.-.
T Consensus 223 -------iaIavDvt~~~d~p~~~~~~~~~~lG~Gp~i~~~--D~~~i~~~~l~~~l~~~A~-~~~Ip~Q~~~~ 286 (356)
T PRK09864 223 -------VVIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLF--DKRYFPNQKLVAALKSCAA-HNDLPLQFSTM 286 (356)
T ss_pred -------EEEEEecccCCCCCCCcccccccccCCCCeEEEc--cCCccCCHHHHHHHHHHHH-HcCCCceEEEc
Confidence 36777765432211 11 1 11 12 2399999999999999997 57899887543
No 80
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=70.94 E-value=58 Score=34.21 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
...+++.|.....-..++. .-.+||.+.|+++|.++. .. ...++-+.|.+
T Consensus 14 l~~~rr~lH~~PEL~f~E~-~Ta~~i~~~L~~~g~~~~-~~----------------------------~~~~TGvva~~ 63 (392)
T COG1473 14 LIEWRRDLHEHPELGFEEY-RTAAYIAEKLEELGFEVV-EV----------------------------GGGKTGVVATL 63 (392)
T ss_pred HHHHHHHHhhCCccchhHH-HHHHHHHHHHHHcCCeeE-ec----------------------------cCCceEEEEEE
Confidence 3344555554443332221 347899999999999822 11 01246678888
Q ss_pred cCCCCCCceEEEEEEeeccC-------------CCCCcch----hhHHHHHHHHHHHhcC-CCCccceEEEeeCCCCCCc
Q 014238 154 RAPRGDGKEAIVLVTPYNAV-------------KGGVRET----LSLGIAYSVFSLLTRV-TWLAKDIIWLVADSQYGEY 215 (428)
Q Consensus 154 rApRgdgtEaiVL~ap~~~~-------------~~~~~~~----~gval~LaLa~yl~~~-~~wAKDIIfv~~D~~~~~~ 215 (428)
+... +|. +|.|-+-||-- +.+..-+ .-.+.+|+.|++|++. .-+.-.|.|+|-=+++++.
T Consensus 64 ~~g~-~g~-tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~ 141 (392)
T COG1473 64 KGGK-PGP-TIALRADMDALPIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG 141 (392)
T ss_pred cCCC-CCC-EEEEEeecccCccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccc
Confidence 8632 333 88888877632 1110001 2256778888899877 6788999999976665433
Q ss_pred hhHHHHHHH
Q 014238 216 APVAAWLRD 224 (428)
Q Consensus 216 ~G~~AWL~a 224 (428)
|.+.-+++
T Consensus 142 -Ga~~mi~~ 149 (392)
T COG1473 142 -GAKAMIED 149 (392)
T ss_pred -cHHHHHhc
Confidence 66666654
No 81
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=53.48 E-value=54 Score=33.71 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEE
Q 014238 74 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 153 (428)
Q Consensus 74 a~~y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~Nvygil 153 (428)
..++.++|-+...-+ +...++++||.++|+++|.++...+ --|+++.+
T Consensus 5 ~~~lLk~Lv~~~s~S-G~E~~V~~~l~~~l~~~g~ev~~D~-------------------------------~Gnlia~~ 52 (343)
T TIGR03106 5 LTETLLALLAIPSPT-GFTDAVVRYVAERLEDLGIEYELTR-------------------------------RGAIRATL 52 (343)
T ss_pred HHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHHcCCeEEECC-------------------------------CeEEEEEE
Confidence 445556666555433 3334789999999999999866322 23789987
Q ss_pred cCCCCCCceEEEEEEeeccC
Q 014238 154 RAPRGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 154 rApRgdgtEaiVL~ap~~~~ 173 (428)
++. .+...++|++|.|..
T Consensus 53 ~g~--~~~~~v~l~aHmDev 70 (343)
T TIGR03106 53 PGR--EATPARAVVTHLDTL 70 (343)
T ss_pred CCC--CCCCeEEEEEeeccc
Confidence 552 223479999998764
No 82
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=45.33 E-value=18 Score=33.18 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=30.0
Q ss_pred cccccchHHHHHHHHHHhchhhHHHHHHHHHHHHHhccc
Q 014238 7 SKKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPV 45 (428)
Q Consensus 7 ~~~~~r~~~~l~~~l~~~~~~ls~ll~l~Gi~~ll~lP~ 45 (428)
..||++.++|...+++|....+|+ +.++.|+.+|.|-+
T Consensus 21 s~~r~k~~~R~i~l~~Ri~~~iSI-isL~~l~v~LaL~l 58 (161)
T PHA02673 21 SVKRQKAIRRYIKLFFRLMAAIAI-IVLAILVVILALAL 58 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 578999999999999998888885 56666777766654
No 83
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=43.83 E-value=1.6e+02 Score=30.16 Aligned_cols=103 Identities=11% Similarity=0.080 Sum_probs=61.7
Q ss_pred CcchhhHHHHHHHHHHHhcCCC-CccceEEEeeCCCCCCchhHHHHHHHhcCCCCCCCCCCcccccccCCCCcccccccc
Q 014238 177 VRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYG 255 (428)
Q Consensus 177 ~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (428)
.|+..|+++++.+++.+++..+ ..+++.|+|+=+++-+ .| .++.-. ..
T Consensus 182 ~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~g-----aa~~i~-------------------------pd 230 (343)
T TIGR03106 182 LDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SG-----ASHALP-------------------------PD 230 (343)
T ss_pred cccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-cc-----chhccc-------------------------Hh
Confidence 4557899999999999987654 5789999998554433 23 112110 00
Q ss_pred ccchhhheeeeEEeecCCCCCcceE----EEEeecCCCCCCChhHHHHHHHHHhhccCceeeeeehh
Q 014238 256 IRRSGTMAAALVLGVAYGNENEDTL----GIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFH 318 (428)
Q Consensus 256 ~~raG~IqaAl~Le~~~~~~~~~~l----~I~~eG~NGqLPNLDLiN~v~~la~~~~gi~v~l~~~~ 318 (428)
+--+|++|+.........+ .|. -...|-.+|-.+.+.+..+|. +.|+++...-.+
T Consensus 231 ------~a~~i~vd~~~~~p~~~~lg~Gp~i~-~~d~~~~~~~~l~~~l~~~A~-~~~Ip~Q~~~~~ 289 (343)
T TIGR03106 231 ------VAELVSVDNGTVAPGQNSSEHGVTIA-MADSSGPFDYHLTRKLIRLCQ-DHGIPHRRDVFR 289 (343)
T ss_pred ------hhccEEEEecccCCCCCcCCCCceEE-EecCCCCCCHHHHHHHHHHHH-HcCCCcEEEecC
Confidence 1122555543221010111 121 123488899999999999997 578998875443
No 84
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=40.60 E-value=2.6e+02 Score=26.41 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=15.2
Q ss_pred EEEEEEeeccCCCCCcchhhHHHHHHHHHHHh
Q 014238 163 AIVLVTPYNAVKGGVRETLSLGIAYSVFSLLT 194 (428)
Q Consensus 163 aiVL~ap~~~~~~~~~~~~gval~LaLa~yl~ 194 (428)
+-++.+.+.+.+. ..+..++-++++-|.
T Consensus 118 t~ii~Isv~~~dp----~~A~~ian~~~~~~~ 145 (226)
T TIGR01006 118 TRLISISVKDKTP----QDASKIANSLREVAS 145 (226)
T ss_pred cEEEEEEEeCCCH----HHHHHHHHHHHHHHH
Confidence 4455555555443 345556666666554
No 85
>PRK09961 exoaminopeptidase; Provisional
Probab=39.51 E-value=86 Score=32.16 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=41.4
Q ss_pred HHHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCC
Q 014238 77 LIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAP 156 (428)
Q Consensus 77 y~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrAp 156 (428)
+.++|-+...-+. ...++++++.++|+++|.++..-+ =-|+++.+++
T Consensus 5 ~L~~L~~~~s~sG-~E~~v~~~i~~~l~~~~~~v~~D~-------------------------------~Gnvi~~~~g- 51 (344)
T PRK09961 5 LLKALSEADAIAS-SEQEVRQILLEEADRLQKEVRFDG-------------------------------LGSVLIRLNE- 51 (344)
T ss_pred HHHHHHhCCCCCC-ChHHHHHHHHHHHHhhCCEEEECC-------------------------------CCCEEEEEcC-
Confidence 3455555544333 334789999999999998865321 1278888765
Q ss_pred CCCCceEEEEEEeeccC
Q 014238 157 RGDGKEAIVLVTPYNAV 173 (428)
Q Consensus 157 RgdgtEaiVL~ap~~~~ 173 (428)
+ .+. .++|++|.|..
T Consensus 52 ~-~~~-~v~l~aHmDev 66 (344)
T PRK09961 52 S-TGP-KVMICAHMDEV 66 (344)
T ss_pred C-CCC-EEEEEecccee
Confidence 2 223 79999999874
No 86
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=39.07 E-value=95 Score=32.07 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=41.0
Q ss_pred HHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCC
Q 014238 78 IKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPR 157 (428)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApR 157 (428)
.++|-....-+ +...++++++.++|++++.++.+.++ -||+|+.++..
T Consensus 4 L~~L~~~~gpS-G~E~~v~~~i~~~l~~~~~~v~~D~~-------------------------------GNvia~~~g~~ 51 (350)
T TIGR03107 4 IKEVTELQGTS-GFEHPIRDYLRQDITPLVDQVETDGL-------------------------------GGIFGIKESQV 51 (350)
T ss_pred HHHHHhCCCCC-CCcHHHHHHHHHHHHhhCCEEEECCC-------------------------------CCEEEEecCCC
Confidence 34444444333 33357899999999999987664432 37899865421
Q ss_pred CCCceEEEEEEeeccC
Q 014238 158 GDGKEAIVLVTPYNAV 173 (428)
Q Consensus 158 gdgtEaiVL~ap~~~~ 173 (428)
..+. .++|++|.|..
T Consensus 52 ~~~~-~vml~AHmDeV 66 (350)
T TIGR03107 52 ENAP-RVMVAAHMDEV 66 (350)
T ss_pred CCCC-EEEEEecccEe
Confidence 1223 89999999864
No 87
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=32.26 E-value=76 Score=28.27 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHHHhcccCC-cccccccccCCCcceeeecchhhHHHHHHHHHHHHhhhcCCCC
Q 014238 26 VLVSVICCTAGVFGLLLLPVLA-KNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLG 90 (428)
Q Consensus 26 ~~ls~ll~l~Gi~~ll~lP~~~-r~TYisENALlPg~v~~~f~~~~~~~a~~y~~~l~~~~~~~~~ 90 (428)
..+|+++.+.|++|-++|--+. .++- .+...+.+++-.+-.++|.++|.++..+.-+
T Consensus 10 qkl~~~Lv~fGfiWGlmLLh~t~qq~~--------~~ss~~LR~QILdLSkrYVKaLAeEn~~~~d 67 (138)
T PF15027_consen 10 QKLGFLLVVFGFIWGLMLLHYTFQQPR--------HQSSAELREQILDLSKRYVKALAEENKNVVD 67 (138)
T ss_pred hhhHHHHHHHHHHHHHHHHHheecCCC--------ccChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4789999999999998875321 1110 1234556677677789999999887766433
No 88
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=30.45 E-value=1e+02 Score=31.70 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=44.5
Q ss_pred CCCCceEEEEEEeeccCCCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhc
Q 014238 157 RGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYH 226 (428)
Q Consensus 157 RgdgtEaiVL~ap~~~~~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh 226 (428)
||...+-|+|+|..=+..-+.+|-+|+|++.-||+-+++-+-- -..=|||.- +-.|.-+||..--
T Consensus 174 rg~~~~eiLlst~lCHPSmaNdn~SG~all~~lak~l~~~ktr-ysYRfvf~P----~TiGsi~wLsrne 238 (435)
T COG4310 174 RGTSKDEILLSTYLCHPSMANDNLSGLALLTFLAKALKSLKTR-YSYRFVFAP----ETIGSIVWLSRNE 238 (435)
T ss_pred cCCccceeeeeecccChhhccCccchHHHHHHHHHHHHhccce-eeEEEEecc----cccchhhhHhcch
Confidence 4678889999998655434455678999998888888643311 234577764 3378899987543
No 89
>PLN02594 phosphatidate cytidylyltransferase
Probab=28.36 E-value=67 Score=33.20 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=26.4
Q ss_pred ccchHHHHHHHHHHhchhhHHHHHHHHHHHHHhc
Q 014238 10 RKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLL 43 (428)
Q Consensus 10 ~~r~~~~l~~~l~~~~~~ls~ll~l~Gi~~ll~l 43 (428)
+.+.+..+-..+++++..+|+.+|++|++|+++-
T Consensus 53 ~~~~l~~~~~~~~~~h~~isf~ly~~gfv~Fvls 86 (342)
T PLN02594 53 SDKFLYRLVSGLIKYHMAICYSLYIAGFVWFILT 86 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544568999999999999999999774
No 90
>PRK09864 putative peptidase; Provisional
Probab=24.38 E-value=2.2e+02 Score=29.56 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=40.1
Q ss_pred HHHHHhhhcCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCC
Q 014238 78 IKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPR 157 (428)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApR 157 (428)
.++|-....-+ +-..+.++++.++|+.++.|+.+-++ -|++++. + +
T Consensus 6 L~~L~~~~g~S-G~E~~v~~~l~~~l~~~~dev~~D~~-------------------------------GNli~~~-g-~ 51 (356)
T PRK09864 6 LQQLCEASAVS-GDEQEVRDILINTLEPCVNEITFDGL-------------------------------GSFVARK-G-N 51 (356)
T ss_pred HHHHHcCCCCC-CchHHHHHHHHHHHHHhCCEEEECCC-------------------------------CCEEEEe-C-C
Confidence 45555544433 33357899999999999998653321 2788875 2 2
Q ss_pred CCCceEEEEEEeeccC
Q 014238 158 GDGKEAIVLVTPYNAV 173 (428)
Q Consensus 158 gdgtEaiVL~ap~~~~ 173 (428)
.+ ..++|.+|.|..
T Consensus 52 -~~-~kvml~AHmDev 65 (356)
T PRK09864 52 -KG-PKVAVVGHMDEV 65 (356)
T ss_pred -CC-cEEEEEeccccc
Confidence 22 389999999864
No 91
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.27 E-value=75 Score=35.04 Aligned_cols=59 Identities=20% Similarity=0.106 Sum_probs=40.9
Q ss_pred cccccchHHHHHHHHHHhchhhHHHHHHHHHHHHH--h------c--ccCCcccccccccCCCcceeeecchh
Q 014238 7 SKKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLL--L------L--PVLAKNTYISENALMPGSASSMLSNQ 69 (428)
Q Consensus 7 ~~~~~r~~~~l~~~l~~~~~~ls~ll~l~Gi~~ll--~------l--P~~~r~TYisENALlPg~v~~~f~~~ 69 (428)
+.+--|.+.|+ +++.|+++.++-+++++.+. - + +.+...+-.||--..++..-+.|..+
T Consensus 10 ~~~~~~l~~r~----ia~lpv~s~v~g~awf~aL~~~pl~~rtyiSEnAlmpg~v~s~~~~~~~~~~~~~~~~ 78 (617)
T KOG3566|consen 10 QIPLVRLLIRH----IAHLPVFSYVAGLAWFFALALLPLLKRTYISENALMPGQVYSYFRNRDVSDASKLLKD 78 (617)
T ss_pred hHHhHHHHHhh----cccchHHHHHHHHHHHHHHhhchhcccceeeccccCccchhhhhhccchhhhHHHHHH
Confidence 33445677777 58889999999999998772 1 2 33566677777777777776665543
No 92
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=22.34 E-value=50 Score=25.49 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=17.3
Q ss_pred ccccccchHHHHHHHHHHhchhhHHHHHHHHH
Q 014238 6 VSKKRKRPIVRLAVLLLSHSVLVSVICCTAGV 37 (428)
Q Consensus 6 ~~~~~~r~~~~l~~~l~~~~~~ls~ll~l~Gi 37 (428)
.+++|.|+..++.+.++--...+|++..++|.
T Consensus 23 ~~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~ 54 (60)
T PF06072_consen 23 HASRRRRRRCRLAVAIVFAVVALCVLSGGLGA 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777666554433344444444443
No 93
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=21.91 E-value=83 Score=24.43 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHhcccCCcccccccccCC
Q 014238 27 LVSVICCTAGVFGLLLLPVLAKNTYISENALM 58 (428)
Q Consensus 27 ~ls~ll~l~Gi~~ll~lP~~~r~TYisENALl 58 (428)
.++.++.++|++.+++ ......|||||..+
T Consensus 5 ~l~~~~~llg~~~l~i--~~~~~syVd~~G~L 34 (63)
T PF13127_consen 5 ILSLILLLLGVVCLFI--FNIIGSYVDEDGVL 34 (63)
T ss_pred HHHHHHHHHHHHHHHH--HhcccceECCCCeE
Confidence 4566666666554443 34567899999876
No 94
>PHA02898 virion envelope protein; Provisional
Probab=20.26 E-value=84 Score=26.19 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=14.3
Q ss_pred chhhHHHHHHHHHHHHHhc
Q 014238 25 SVLVSVICCTAGVFGLLLL 43 (428)
Q Consensus 25 ~~~ls~ll~l~Gi~~ll~l 43 (428)
|+-+|++||++|++.++-+
T Consensus 44 wRalSii~FIlgivl~lG~ 62 (92)
T PHA02898 44 LRSISIISFILAIILILGI 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4467999999998877543
No 95
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=20.15 E-value=1.6e+02 Score=31.03 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=44.1
Q ss_pred EEEEEEeeccC-CCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCC------CchhHHHHHHHhcCC
Q 014238 163 AIVLVTPYNAV-KGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYG------EYAPVAAWLRDYHTP 228 (428)
Q Consensus 163 aiVL~ap~~~~-~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~------~~~G~~AWL~aYh~~ 228 (428)
.+.+.||||+. .|..+|..|++.+.++++-|+...+=+.=+.|-.-++.-. =..|.+-+|+.|...
T Consensus 191 vv~i~AH~DHW~~G~tDN~lg~~~AV~~~~~lr~~~~~~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~~k~~ 263 (486)
T COG4882 191 VVLIGAHLDHWYTGFTDNILGVAQAVETAGRLRGRGLAAGLVVFTAEEHGMPGMASFYWAAGSRGLLKESKAA 263 (486)
T ss_pred ceEEeechhhhhhcccchhhhHHHHHHHHHHHhhcCcceeEEEEeccccCCCCCcceeecccchHHHhhcCCc
Confidence 47888999987 4677778999999988888886665544333333233110 025777888888653
Done!