BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014240
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 34 KDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVE--KKFATLLHQCLSSIKRG 91
DT L + L ++ + ++ + AF + E A +L + + +
Sbjct: 436 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 495
Query: 92 SSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSK-IASLLECLAVI 150
+ + + AIG LA +VG+ N E ++ + P+ Q D K + LLECL+ +
Sbjct: 496 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSV 555
Query: 151 T 151
Sbjct: 556 A 556
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 34 KDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVE--KKFATLLHQCLSSIKRG 91
DT L + L ++ + ++ + AF + E A +L + + +
Sbjct: 474 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 533
Query: 92 SSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSK-IASLLECLAVI 150
+ + + AIG LA +VG+ N E ++ + P+ Q D K + LLECL+ +
Sbjct: 534 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSV 593
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 34 KDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVE--KKFATLLHQCLSSIKRG 91
DT L + L ++ + ++ + AF + E A +L + + +
Sbjct: 449 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 508
Query: 92 SSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSK-IASLLECLAVI 150
+ + + AIG LA +VG+ N E ++ + P+ Q D K + LLECL+ +
Sbjct: 509 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSV 568
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 77 FATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFD 136
A +L + + + + + + AIG LA +VG+ N E ++ P+ Q D
Sbjct: 519 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQXLXPPLIQKWNXLKD 578
Query: 137 SSK-IASLLECLAVI 150
K + LLECL+ +
Sbjct: 579 EDKDLFPLLECLSSV 593
>pdb|2AE0|X Chain X, Crystal Structure Of Mlta From Escherichia Coli Reveals A
Unique Lytic Transglycosylase Fold
Length = 345
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 278 LNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQL 337
+N +RN S+ + +Q N++ + E+L G + G ++ +
Sbjct: 43 INHIRN---------SSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNY 93
Query: 338 IQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSV-AEHHISS-TDKRMYKSPNSV 395
+ F ++ +H ++ EF + ++ PKR LS AE + + +DK + NS+
Sbjct: 94 GNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSL 153
Query: 396 VN 397
++
Sbjct: 154 MD 155
>pdb|2PJJ|A Chain A, E. Coli Lytic Transglycosylase Mlta-D308a In Apo-1 Form
Length = 345
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 278 LNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQL 337
+N +RN S+ + +Q N++ + E+L G + G ++ +
Sbjct: 43 INHIRN---------SSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNY 93
Query: 338 IQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSV-AEHHISS-TDKRMYKSPNSV 395
+ F ++ +H ++ EF + ++ PKR LS AE + + +DK + NS+
Sbjct: 94 GNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSL 153
Query: 396 VN 397
++
Sbjct: 154 MD 155
>pdb|2PIC|A Chain A, E. Coli Lytic Transglycosylase Mlta-D308a In Apo-2 Form
Length = 345
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 278 LNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQL 337
+N +RN S+ + +Q N++ + E+L G + G ++ +
Sbjct: 43 INHIRN---------SSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNY 93
Query: 338 IQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSV-AEHHISS-TDKRMYKSPNSV 395
+ F ++ +H ++ EF + ++ PKR LS AE + + +DK + NS+
Sbjct: 94 GNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSL 153
Query: 396 VN 397
++
Sbjct: 154 MD 155
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 34 KDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSS 93
KD ++D+ ++EK G++ + AL+++ F T ++ +++LL Q +
Sbjct: 712 KDVVVDKKQSVIFEKAGNSTDSALAAV---FVPTGYDEYTSSAYSSLLGQIVQPWFYNQL 768
Query: 94 REIALASHAIGLLALTVG 111
R +A+ ++VG
Sbjct: 769 RTEEQLGYAVFAFPMSVG 786
>pdb|2GAE|A Chain A, Crystal Structure Of Mlta From E. Coli
Length = 346
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 278 LNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQL 337
+N +RN S+ + +Q N++ + E+L G + G ++ +
Sbjct: 44 INHIRN---------SSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNY 94
Query: 338 IQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYL-SVAEHHISS-TDKRMYKSPNSV 395
+ F ++ +H ++ EF + ++ PKR L S AE + + +DK + NS+
Sbjct: 95 GNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGALSDKYILAYSNSL 154
Query: 396 VN 397
++
Sbjct: 155 MD 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,283,644
Number of Sequences: 62578
Number of extensions: 430256
Number of successful extensions: 769
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 16
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)