BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014240
(428 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5S1U6|IFRD1_PIG Interferon-related developmental regulator 1 OS=Sus scrofa GN=IFRD1
PE=2 SV=1
Length = 450
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 185/410 (45%), Gaps = 33/410 (8%)
Query: 9 SSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTL 68
S S S+ D V E Q + + L +D +K TR+ AL I A + +
Sbjct: 54 SGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASRM 113
Query: 69 QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPIS 128
++F+ ++ TL +K+G S E A+ +L + +G G S E+L+ ++ P+
Sbjct: 114 LYEFILERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEVLK-TLGPVL 172
Query: 129 QALKSGFDSSKIA--SLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL----GSNVVA 182
+ + +S A + C V F+ +D E T+Q + I SNV+
Sbjct: 173 KKIICDGTASIQARQTCATCFGVCCFIATDDITELYSTLQCLENIFTKSYLKEKDSNVIC 232
Query: 183 TRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240
+ P+ + + + AW+ LLT C L KK + + +LL DD ++RIAAGE+L
Sbjct: 233 STPNTALHISSLLAWTLLLTI---CPLSEVKKKLEMHVHKLPSLLSSDDVNMRIAAGESL 289
Query: 241 ALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTS 300
AL+ E A+G S Y ++ L +R L+ + G K AK D
Sbjct: 290 ALLFEL---------ARGME--SDFFYEDMESLT----QMLRALATD-GNKHRAKVDKRK 333
Query: 301 QRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEF 360
QR++F+DIL +E P + K G E + W + + K LG G H+Q NEF
Sbjct: 334 QRSVFRDILRAVEERDFPTETVKFGPERMYIDCWVKKRTYDTFKEILGSGMQYHLQSNEF 393
Query: 361 LHDVFGFTPKRKY--LSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQR 408
L +VF P ++ IS ++ +Y NS KART+ +K R
Sbjct: 394 LRNVFELGPPVMLDAATLKTMKISRFERHLY---NSAAFKARTKARSKCR 440
>sp|O00458|IFRD1_HUMAN Interferon-related developmental regulator 1 OS=Homo sapiens
GN=IFRD1 PE=1 SV=4
Length = 451
Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 185/411 (45%), Gaps = 35/411 (8%)
Query: 9 SSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTL 68
S S S+ D V E Q + + L +D +K TR+ AL I A + +
Sbjct: 55 SGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKM 114
Query: 69 QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPIS 128
++F+ ++ TL +K+G S E A+ +L + +G G S EIL+ ++ PI
Sbjct: 115 LYEFILERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILK-TLGPIL 173
Query: 129 QALKSGFDSSKIA--SLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL----GSNVVA 182
+ + +S A + C V F+ +D E T++ + I + V+
Sbjct: 174 KKIICDGSASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVIC 233
Query: 183 TRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240
+ P+ + + + AW+ LLT C ++ KK + +LL DD ++RIAAGE+L
Sbjct: 234 STPNTVLHISSLLAWTLLLTI---CPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESL 290
Query: 241 ALILETGSLEKFSSEAKG-SNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLT 299
AL+ E A+G +D E+ L + +R L+ + G K AK D
Sbjct: 291 ALLFEL---------ARGIESDFFYEDMESLTQM-------LRALATD-GNKHRAKVDKR 333
Query: 300 SQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENE 359
QR++F+D+L +E P + K G E + W + + K LG G H+Q NE
Sbjct: 334 KQRSVFRDVLRAVEERDFPTETIKFGPERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNE 393
Query: 360 FLHDVFGFTPKRKY--LSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQR 408
FL +VF P ++ IS ++ +Y NS KART+ +K R
Sbjct: 394 FLRNVFELGPPVMLDAATLKTMKISRFERHLY---NSAAFKARTKARSKCR 441
>sp|P19182|IFRD1_MOUSE Interferon-related developmental regulator 1 OS=Mus musculus
GN=Ifrd1 PE=2 SV=2
Length = 449
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 186/411 (45%), Gaps = 35/411 (8%)
Query: 9 SSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTL 68
S S S+ D V E Q + + L +D +K TR+ AL + A ++ +
Sbjct: 53 SGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGLKNALSSKV 112
Query: 69 QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPIS 128
++FV ++ TL +K+G S E A+ +L + +G G S EIL+ ++ PI
Sbjct: 113 LYEFVLERRMTLTDSIERCLKKGKSDEQRAAAAVASVLCIQLGPGFESEEILK-TLGPIL 171
Query: 129 QALKSGFDSSKIA--SLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL----GSNVVA 182
+ + +S A + C V F+ +D E T++ I +NV
Sbjct: 172 KKIICDGAASIQARQTCATCFGVCCFIATDDITELYSTLECFENIFTKSYLKEKDTNVTC 231
Query: 183 TRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240
+ P+ + + + AW+ LLT C ++ KK + +LL DD ++RIAAGE+L
Sbjct: 232 STPNTVLHISSLLAWTLLLTI---CPINEVKKKLELHFHKLPSLLSCDDVNMRIAAGESL 288
Query: 241 ALILETGSLEKFSSEAKG-SNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLT 299
AL+ E A+G +D E+ L + +R L+ + G K AK D
Sbjct: 289 ALLFEL---------ARGMESDFFYEDMDSLTQM-------LRALATD-GNKHRAKVDKR 331
Query: 300 SQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENE 359
QR++F+D+L +E P + K G E + +W + + K LG G H+Q NE
Sbjct: 332 KQRSVFRDVLRAVEERDFPTETVKFGPERMYIDSWVKKHTYDTFKEVLGSGMQYHLQTNE 391
Query: 360 FLHDVFGFTPKRKY--LSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQR 408
FL +VF P ++ IS ++ +Y NS KART+ +K R
Sbjct: 392 FLRNVFELGPPVMLDAATLKTMKISRFERHLY---NSAAFKARTKARSKCR 439
>sp|P20695|IFRD1_RAT Interferon-related developmental regulator 1 OS=Rattus norvegicus
GN=Ifrd1 PE=2 SV=1
Length = 449
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 112/411 (27%), Positives = 184/411 (44%), Gaps = 35/411 (8%)
Query: 9 SSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTL 68
S S S+ D V E Q + + L +D +K TR+ AL + A ++ +
Sbjct: 53 SGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGVKNALSSKV 112
Query: 69 QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPIS 128
++FV ++ TL +K+G S A+ +L + +G G S EIL+ ++ PI
Sbjct: 113 LYEFVLERRMTLTDSIERCLKKGKSDGQRAAAALASVLCIQLGPGLESEEILK-TLGPIL 171
Query: 129 QALKSGFDSSKIA--SLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL----GSNVVA 182
+ + +S A + C V F+ +D E T++ + I +NV
Sbjct: 172 KKIICDGTASIQARQTCATCFGVCCFIATDDITELYSTLECLEGIFTKSYLKEKDTNVPC 231
Query: 183 TRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240
+ P+ + + + AW+ LLT C + KK + +LL DD ++RIAAGE+L
Sbjct: 232 STPNTVLHISSLLAWTLLLTI---CPISEVKKKLELHFHKLPSLLSCDDVNMRIAAGESL 288
Query: 241 ALILETGSLEKFSSEAKG-SNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLT 299
AL+ E A+G +D E+ L + +R L+ + G K AK D
Sbjct: 289 ALLFEL---------ARGMESDFFYEDMDSLTQM-------LRALATD-GNKHRAKVDKR 331
Query: 300 SQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENE 359
QR++F+D+L +E P + K G E + +W + + K LG G H+Q NE
Sbjct: 332 KQRSVFRDVLRAVEERDFPTETVKFGPERMYIDSWVKKHTYDTFKEALGSGMQYHLQTNE 391
Query: 360 FLHDVFGFTPKRKY--LSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQR 408
FL +VF P ++ I ++ +Y NS KART+ +K R
Sbjct: 392 FLRNVFELGPPVMLDAATLKTMKIPRFERHLY---NSAAFKARTKARSKCR 439
>sp|Q12894|IFRD2_HUMAN Interferon-related developmental regulator 2 OS=Homo sapiens
GN=IFRD2 PE=1 SV=3
Length = 506
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 182/409 (44%), Gaps = 35/409 (8%)
Query: 10 SVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQ 69
S ++ ++ D + G +E EK L E +D L +K TR+ AL S+ A + L
Sbjct: 116 STTAEDSLGGDVVDEQGQQEDLEEK---LKEYVDCLTDKSAKTRQGALESLRLALASRLL 172
Query: 70 HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQ 129
F+ ++ TL +K+G E ALA+ +GLL + +G G E+ S+ P+
Sbjct: 173 PDFLLERRLTLADALEKCLKKGKGEEQALAAAVLGLLCVQLGPGPKGEELFH-SLQPLLV 231
Query: 130 ALKSGFDSSKIASLLEC---LAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPS 186
++ S +S A+ L C L + +V D ++ + + + G +T P
Sbjct: 232 SVLSDSTASP-AARLHCASALGLGCYVAAADIQDLVSCLACLESVFSRFYGLGGSSTSPV 290
Query: 187 API----ITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALAL 242
P + + LL T+ + S + + LL + ++RIAAGE +AL
Sbjct: 291 VPASLHGLLSAALQAWALLLTICPSTQISHILDRQLPRLPQLLSSESVNLRIAAGETIAL 350
Query: 243 ILETG-SLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQ 301
+ E LE EE+++ + ++ + + +R L+ ++ K AK D Q
Sbjct: 351 LFELARDLE--------------EEFVY-EDMEA-LCSVLRTLATDSN-KYRAKADRRRQ 393
Query: 302 RNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFL 361
R+ F+ +L +E G C E + G E L +W++ K LG G H+Q NE L
Sbjct: 394 RSTFRAVLHSVEGGECEEEIVRFGFEVLYMDSWARHRIYAAFKEVLGSGMHHHLQNNELL 453
Query: 362 HDVFGFTPKRKYLSVA--EHHISSTDKRMYKSPNSVVNKARTQKLNKQR 408
D+FG P + A + +K +Y N+ KART+ ++ R
Sbjct: 454 RDIFGLGPVLLLDATALKACKVPRFEKHLY---NAAAFKARTKARSRVR 499
>sp|O42973|YGZ3_SCHPO Uncharacterized protein C20F10.03 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC20F10.03 PE=1 SV=1
Length = 446
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 274 KGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCP---ETSTKIGGESLK 330
+ ++L +R+L+ E+ K KK +F+++L+ +E S +IG +++
Sbjct: 284 RNQLLITLRDLASESS-KSIGKKQRKVLHQVFRNVLQTIEEPNARNILRNSVRIGQSTVQ 342
Query: 331 TSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFT 368
+W ++++ L++ LG F ++ ++ F+ G++
Sbjct: 343 LDSWKKILRAQMLRYVLGSSFSEYFAKSTFIRYFLGYS 380
>sp|Q614K9|MED1L_CAEBR Mediator of RNA polymerase II transcription subunit 1.2
OS=Caenorhabditis briggsae GN=mdt-1.2 PE=3 SV=1
Length = 523
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 218 ISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLK-GK 276
++ ++ LD++DR AA + L +L+T + ++ + + +N G Y+H L+ G+
Sbjct: 169 LAVYNKDLDRNDRKTCKAAMDVLGSMLKTMNADEMYTSIQNNNYGY---YLHRSDLRQGR 225
Query: 277 ILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQ 336
+ V L + +K S + DIL F E+ + P S E W +
Sbjct: 226 LYYNVEPLY----RRVRSKHHTYSLQKEDWDILPFFEFSFVPSDSVHAFPEHNPYGEWKE 281
>sp|Q7ZXQ3|HERP2_XENLA Homocysteine-responsive endoplasmic reticulum-resident
ubiquitin-like domain member 2 protein OS=Xenopus laevis
GN=herpud2 PE=2 SV=1
Length = 398
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 152 FVGGNDPEETERTMQIMWQIVHPK-LGSNVVATRPSAPIITAMVSAWSFLLT 202
V NDP+E ER M Q VH G NVVA + + SAWSF+ T
Sbjct: 338 LVNNNDPQELERRMDDGLQEVHNNDAGVNVVARQ------GVLASAWSFITT 383
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,916,098
Number of Sequences: 539616
Number of extensions: 6045904
Number of successful extensions: 13451
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 13430
Number of HSP's gapped (non-prelim): 32
length of query: 428
length of database: 191,569,459
effective HSP length: 120
effective length of query: 308
effective length of database: 126,815,539
effective search space: 39059186012
effective search space used: 39059186012
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)