Query 014240
Match_columns 428
No_of_seqs 150 out of 224
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2842 Interferon-related pro 100.0 1.8E-72 3.9E-77 554.4 31.9 382 11-413 35-425 (427)
2 PF05004 IFRD: Interferon-rela 100.0 2.6E-66 5.6E-71 516.4 30.3 266 31-313 38-309 (309)
3 PF04836 IFRD_C: Interferon-re 99.5 7.6E-15 1.6E-19 108.6 3.2 52 358-412 1-52 (54)
4 KOG2842 Interferon-related pro 97.7 0.0017 3.8E-08 66.0 16.8 291 17-350 45-380 (427)
5 PF12348 CLASP_N: CLASP N term 97.4 0.0094 2E-07 56.5 17.0 195 38-248 5-209 (228)
6 PRK09687 putative lyase; Provi 97.1 0.038 8.2E-07 54.9 17.3 163 37-243 24-186 (280)
7 KOG2171 Karyopherin (importin) 95.8 0.84 1.8E-05 52.5 19.9 181 50-243 362-547 (1075)
8 PF13646 HEAT_2: HEAT repeats; 95.4 0.26 5.6E-06 39.0 10.4 87 124-241 1-88 (88)
9 KOG1820 Microtubule-associated 95.0 1.4 2.9E-05 50.1 18.0 180 41-244 258-442 (815)
10 PF12719 Cnd3: Nuclear condens 94.7 1.1 2.4E-05 44.6 15.2 101 135-248 39-146 (298)
11 cd00020 ARM Armadillo/beta-cat 94.6 0.19 4.2E-06 41.4 8.1 107 123-245 8-120 (120)
12 PF10508 Proteasom_PSMB: Prote 94.4 1.3 2.9E-05 47.5 15.9 193 40-248 163-369 (503)
13 KOG2171 Karyopherin (importin) 94.3 2.9 6.3E-05 48.3 18.5 181 47-246 260-462 (1075)
14 PF01602 Adaptin_N: Adaptin N 93.9 3.2 6.9E-05 44.0 17.4 183 35-246 113-297 (526)
15 PF05536 Neurochondrin: Neuroc 93.2 3.9 8.3E-05 44.5 16.7 193 35-244 4-212 (543)
16 PF02985 HEAT: HEAT repeat; I 93.1 0.17 3.7E-06 32.9 3.9 29 218-246 2-30 (31)
17 PLN03200 cellulose synthase-in 93.0 4.7 0.0001 50.0 18.5 185 39-245 449-638 (2102)
18 KOG0211 Protein phosphatase 2A 92.6 3.4 7.4E-05 46.6 15.5 187 35-247 478-666 (759)
19 PF01602 Adaptin_N: Adaptin N 92.4 3 6.5E-05 44.2 14.4 99 80-200 80-179 (526)
20 PLN03200 cellulose synthase-in 92.2 5.8 0.00013 49.3 17.8 151 80-247 610-766 (2102)
21 PRK13800 putative oxidoreducta 92.0 2.9 6.4E-05 48.1 14.7 47 185-243 819-865 (897)
22 PF10508 Proteasom_PSMB: Prote 91.6 13 0.00029 39.9 18.3 196 35-244 118-318 (503)
23 KOG1248 Uncharacterized conser 91.4 15 0.00032 43.0 18.8 177 53-247 717-900 (1176)
24 PRK09687 putative lyase; Provi 91.4 12 0.00026 37.1 16.5 87 123-241 160-246 (280)
25 KOG1824 TATA-binding protein-i 91.4 20 0.00043 41.3 19.3 228 39-313 438-679 (1233)
26 PRK13800 putative oxidoreducta 91.3 4.5 9.8E-05 46.6 15.2 148 37-243 622-769 (897)
27 PF05004 IFRD: Interferon-rela 90.6 16 0.00036 36.7 16.8 122 117-247 81-217 (309)
28 PF13646 HEAT_2: HEAT repeats; 90.4 5.2 0.00011 31.3 10.7 86 39-148 2-88 (88)
29 PF12460 MMS19_C: RNAPII trans 90.1 6.7 0.00015 41.0 14.0 58 189-247 339-396 (415)
30 PF08064 UME: UME (NUC010) dom 89.9 2.9 6.3E-05 35.4 9.2 89 123-224 12-104 (107)
31 PF13513 HEAT_EZ: HEAT-like re 89.9 0.59 1.3E-05 34.1 4.3 52 188-241 2-53 (55)
32 KOG0166 Karyopherin (importin) 89.8 13 0.00028 40.2 15.7 195 38-243 68-306 (514)
33 KOG1241 Karyopherin (importin) 89.1 32 0.0007 38.7 18.3 179 50-247 231-437 (859)
34 PF05804 KAP: Kinesin-associat 89.0 17 0.00038 40.8 16.7 153 77-247 488-651 (708)
35 KOG2023 Nuclear transport rece 88.7 13 0.00028 41.2 14.8 168 36-225 128-304 (885)
36 PF13513 HEAT_EZ: HEAT-like re 88.5 0.67 1.4E-05 33.8 3.7 50 96-148 4-53 (55)
37 KOG1824 TATA-binding protein-i 87.5 34 0.00074 39.5 17.5 196 34-243 474-678 (1233)
38 KOG1242 Protein containing ada 87.2 26 0.00057 38.2 16.1 114 123-248 334-447 (569)
39 smart00802 UME Domain in UVSB 87.0 5.4 0.00012 34.0 8.9 84 124-220 13-100 (107)
40 PF12719 Cnd3: Nuclear condens 86.2 12 0.00027 37.1 12.5 108 78-202 25-143 (298)
41 KOG1248 Uncharacterized conser 86.0 40 0.00087 39.6 17.5 189 42-244 658-855 (1176)
42 cd00020 ARM Armadillo/beta-cat 85.3 9.4 0.0002 31.1 9.5 71 80-153 8-79 (120)
43 PTZ00429 beta-adaptin; Provisi 85.2 74 0.0016 36.2 20.5 61 81-150 107-167 (746)
44 PF04826 Arm_2: Armadillo-like 84.8 42 0.0009 32.9 16.7 106 38-155 56-163 (254)
45 KOG1240 Protein kinase contain 80.4 27 0.00058 41.2 13.2 113 124-247 424-539 (1431)
46 KOG1242 Protein containing ada 79.6 42 0.00091 36.7 13.8 187 37-248 135-327 (569)
47 PF12755 Vac14_Fab1_bd: Vacuol 79.4 10 0.00022 31.6 7.4 48 106-156 13-60 (97)
48 PTZ00429 beta-adaptin; Provisi 79.3 1.2E+02 0.0026 34.6 17.9 182 36-246 140-327 (746)
49 TIGR02270 conserved hypothetic 77.4 1E+02 0.0022 32.5 16.0 47 185-243 159-205 (410)
50 KOG2137 Protein kinase [Signal 76.6 41 0.00088 37.6 12.8 144 64-229 377-521 (700)
51 PF02985 HEAT: HEAT repeat; I 76.2 5.8 0.00013 25.6 4.0 28 123-151 1-28 (31)
52 COG5181 HSH155 U2 snRNP splice 76.1 70 0.0015 35.5 14.1 59 188-247 703-761 (975)
53 PF12755 Vac14_Fab1_bd: Vacuol 73.5 33 0.00072 28.5 9.0 81 53-137 3-83 (97)
54 PF13251 DUF4042: Domain of un 72.4 45 0.00098 31.1 10.5 61 185-245 114-174 (182)
55 KOG2956 CLIP-associating prote 72.3 1.4E+02 0.0031 31.9 16.7 188 37-247 287-479 (516)
56 PF12530 DUF3730: Protein of u 70.9 1E+02 0.0022 29.6 18.2 106 121-241 120-228 (234)
57 PF01347 Vitellogenin_N: Lipop 69.3 69 0.0015 34.9 12.9 132 36-194 431-581 (618)
58 KOG2023 Nuclear transport rece 68.7 1.4E+02 0.003 33.5 14.4 116 117-248 388-508 (885)
59 KOG1059 Vesicle coat complex A 68.2 2.2E+02 0.0047 32.3 16.2 204 38-244 338-576 (877)
60 PF00514 Arm: Armadillo/beta-c 68.2 9.5 0.00021 26.0 3.9 28 216-243 12-39 (41)
61 KOG0213 Splicing factor 3b, su 67.6 1.7E+02 0.0036 33.4 14.8 188 35-246 715-910 (1172)
62 KOG0213 Splicing factor 3b, su 67.2 88 0.0019 35.5 12.6 123 96-235 529-655 (1172)
63 cd03569 VHS_Hrs_Vps27p VHS dom 66.7 43 0.00093 29.8 8.7 69 79-147 41-109 (142)
64 PF12074 DUF3554: Domain of un 66.5 1.5E+02 0.0032 29.9 16.0 187 54-246 37-236 (339)
65 COG5096 Vesicle coat complex, 65.7 1.9E+02 0.0042 32.9 15.3 47 96-153 109-155 (757)
66 KOG2274 Predicted importin 9 [ 65.5 1.1E+02 0.0025 35.2 13.3 129 117-248 544-692 (1005)
67 KOG1059 Vesicle coat complex A 63.9 2.6E+02 0.0056 31.7 19.1 187 36-247 144-364 (877)
68 PF05536 Neurochondrin: Neuroc 60.9 2.5E+02 0.0055 30.6 20.5 230 78-352 4-245 (543)
69 KOG1241 Karyopherin (importin) 60.7 3E+02 0.0065 31.4 21.0 297 32-367 445-784 (859)
70 smart00638 LPD_N Lipoprotein N 58.8 1.8E+02 0.0039 31.5 13.6 134 36-196 393-539 (574)
71 KOG0168 Putative ubiquitin fus 58.8 3.4E+02 0.0074 31.4 17.0 191 37-247 168-366 (1051)
72 COG5116 RPN2 26S proteasome re 55.7 3.3E+02 0.0071 30.3 15.0 21 187-207 635-655 (926)
73 PF03378 CAS_CSE1: CAS/CSE pro 55.4 1.1E+02 0.0024 32.5 10.8 148 70-227 17-185 (435)
74 COG5215 KAP95 Karyopherin (imp 53.9 3.5E+02 0.0076 30.1 16.2 159 76-247 91-252 (858)
75 KOG0212 Uncharacterized conser 53.2 3.5E+02 0.0076 29.9 14.0 202 39-248 7-241 (675)
76 KOG0166 Karyopherin (importin) 52.7 1.4E+02 0.0029 32.5 10.9 135 97-248 297-439 (514)
77 KOG2032 Uncharacterized conser 49.2 1.1E+02 0.0025 32.9 9.5 119 37-160 255-379 (533)
78 smart00638 LPD_N Lipoprotein N 48.6 2.2E+02 0.0049 30.8 12.3 98 118-240 438-540 (574)
79 smart00185 ARM Armadillo/beta- 48.5 30 0.00065 22.7 3.6 28 216-243 12-39 (41)
80 KOG2259 Uncharacterized conser 47.7 3.8E+02 0.0081 30.3 13.3 55 185-246 210-264 (823)
81 COG5215 KAP95 Karyopherin (imp 47.5 4.4E+02 0.0096 29.4 19.8 264 69-367 488-782 (858)
82 KOG1240 Protein kinase contain 47.5 5.9E+02 0.013 30.8 15.5 187 38-241 427-642 (1431)
83 PF00790 VHS: VHS domain; Int 47.0 2E+02 0.0043 25.2 11.9 100 38-148 6-114 (140)
84 PF10363 DUF2435: Protein of u 46.8 1.3E+02 0.0029 24.7 7.8 73 36-111 3-75 (92)
85 PF08506 Cse1: Cse1; InterPro 46.2 86 0.0019 32.5 8.1 132 96-240 228-370 (370)
86 COG5096 Vesicle coat complex, 45.5 5.2E+02 0.011 29.6 16.6 131 88-248 28-159 (757)
87 KOG4224 Armadillo repeat prote 44.5 1.7E+02 0.0037 30.7 9.6 138 83-240 212-358 (550)
88 cd03561 VHS VHS domain family; 44.4 2.1E+02 0.0046 24.8 11.2 70 81-151 39-111 (133)
89 COG5181 HSH155 U2 snRNP splice 43.1 92 0.002 34.6 7.8 131 96-248 334-468 (975)
90 smart00288 VHS Domain present 42.0 2.1E+02 0.0045 25.0 8.8 65 82-146 40-105 (133)
91 PF06012 DUF908: Domain of Unk 41.6 78 0.0017 32.1 6.9 55 188-247 3-57 (329)
92 KOG2025 Chromosome condensatio 39.4 4.5E+02 0.0097 30.0 12.4 148 37-199 41-190 (892)
93 PF13251 DUF4042: Domain of un 38.8 3.3E+02 0.0071 25.4 11.4 107 45-152 49-174 (182)
94 COG5330 Uncharacterized protei 38.7 2.7E+02 0.006 28.9 10.2 62 83-148 11-72 (364)
95 PF10193 Telomere_reg-2: Telom 38.6 1.5E+02 0.0033 25.2 7.3 102 38-150 5-113 (114)
96 KOG1820 Microtubule-associated 38.5 2.2E+02 0.0047 32.9 10.3 107 37-156 337-447 (815)
97 KOG4224 Armadillo repeat prote 38.4 5E+02 0.011 27.4 12.5 163 79-246 251-447 (550)
98 KOG2956 CLIP-associating prote 37.7 4.1E+02 0.009 28.6 11.4 53 37-89 330-385 (516)
99 PF12231 Rif1_N: Rap1-interact 37.1 4.8E+02 0.01 26.8 13.7 178 51-247 8-203 (372)
100 TIGR02270 conserved hypothetic 36.8 3.4E+02 0.0074 28.5 10.9 46 185-243 129-174 (410)
101 KOG2032 Uncharacterized conser 36.7 3.4E+02 0.0074 29.4 10.7 114 119-244 255-370 (533)
102 cd03567 VHS_GGA VHS domain fam 36.7 2.8E+02 0.006 24.6 8.8 50 82-132 41-91 (139)
103 PF12348 CLASP_N: CLASP N term 36.2 3.5E+02 0.0077 25.0 15.9 148 40-206 57-210 (228)
104 COG1413 FOG: HEAT repeat [Ener 35.3 4.5E+02 0.0098 25.9 16.2 164 38-246 45-210 (335)
105 COG5064 SRP1 Karyopherin (impo 34.2 85 0.0018 32.5 5.6 56 185-241 297-352 (526)
106 PF08389 Xpo1: Exportin 1-like 32.3 3.1E+02 0.0067 23.1 10.9 68 162-240 81-148 (148)
107 COG5116 RPN2 26S proteasome re 32.0 2.1E+02 0.0045 31.8 8.3 89 131-244 561-649 (926)
108 cd00256 VATPase_H VATPase_H, r 32.0 6.5E+02 0.014 26.8 18.1 100 50-150 68-171 (429)
109 KOG4653 Uncharacterized conser 31.9 8.8E+02 0.019 28.3 16.0 108 81-203 808-919 (982)
110 PF08045 CDC14: Cell division 31.7 5.2E+02 0.011 25.5 12.4 177 35-243 2-205 (257)
111 COG5095 TAF6 Transcription ini 31.5 2.5E+02 0.0055 28.6 8.3 25 38-62 199-224 (450)
112 PF05918 API5: Apoptosis inhib 31.3 7.5E+02 0.016 27.3 15.0 83 81-174 25-107 (556)
113 KOG1943 Beta-tubulin folding c 31.2 9.7E+02 0.021 28.6 16.8 153 38-206 678-841 (1133)
114 KOG0211 Protein phosphatase 2A 30.7 5.2E+02 0.011 29.6 11.6 127 97-246 497-626 (759)
115 KOG1060 Vesicle coat complex A 30.3 7.2E+02 0.016 28.7 12.3 29 278-317 378-406 (968)
116 PF11698 V-ATPase_H_C: V-ATPas 29.4 1.5E+02 0.0033 25.8 5.7 58 185-243 56-113 (119)
117 KOG0915 Uncharacterized conser 28.3 3.7E+02 0.0081 33.1 10.2 112 34-147 1037-1155(1702)
118 PRK00321 rdgC recombination as 27.6 3.1E+02 0.0068 27.7 8.5 73 273-349 79-159 (303)
119 PF12397 U3snoRNP10: U3 small 27.0 3.5E+02 0.0076 22.7 7.7 70 76-151 3-73 (121)
120 PF14500 MMS19_N: Dos2-interac 26.8 6.1E+02 0.013 24.8 17.2 36 212-247 204-239 (262)
121 PF08064 UME: UME (NUC010) dom 26.6 3.8E+02 0.0083 22.4 9.7 93 70-170 2-99 (107)
122 KOG1060 Vesicle coat complex A 26.4 1.1E+03 0.023 27.5 15.8 141 77-247 320-460 (968)
123 KOG1967 DNA repair/transcripti 25.1 1.2E+03 0.025 27.5 13.3 161 77-247 865-1026(1030)
124 COG5240 SEC21 Vesicle coat com 24.6 1E+03 0.022 26.7 15.5 43 305-347 452-498 (898)
125 KOG3046 Transcription factor, 24.4 1.9E+02 0.004 26.0 5.4 45 274-320 43-88 (147)
126 cd03568 VHS_STAM VHS domain fa 23.4 2.5E+02 0.0055 25.0 6.3 65 84-148 42-106 (144)
127 KOG2062 26S proteasome regulat 22.8 1.2E+03 0.026 26.9 12.6 166 35-244 448-617 (929)
128 KOG1992 Nuclear export recepto 22.6 6.1E+02 0.013 29.4 10.0 34 207-240 489-522 (960)
129 PF08216 CTNNBL: Catenin-beta- 22.5 66 0.0014 27.6 2.2 45 189-236 62-107 (108)
130 PF12830 Nipped-B_C: Sister ch 22.4 3.8E+02 0.0082 24.7 7.5 38 212-249 4-41 (187)
131 COG1413 FOG: HEAT repeat [Ener 22.2 7.6E+02 0.016 24.3 10.2 93 122-246 43-136 (335)
132 KOG1851 Uncharacterized conser 21.4 1.1E+03 0.024 29.4 12.3 56 80-135 1237-1295(1710)
133 KOG1077 Vesicle coat complex A 21.0 5.7E+02 0.012 29.2 9.3 88 35-129 324-415 (938)
134 KOG4653 Uncharacterized conser 20.7 6.6E+02 0.014 29.2 9.9 76 71-148 839-914 (982)
135 KOG2137 Protein kinase [Signal 20.3 1.3E+03 0.028 26.2 13.1 71 161-245 387-458 (700)
136 PF07571 DUF1546: Protein of u 20.1 2.8E+02 0.006 22.7 5.4 51 96-148 23-74 (92)
No 1
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=100.00 E-value=1.8e-72 Score=554.38 Aligned_cols=382 Identities=27% Similarity=0.343 Sum_probs=339.4
Q ss_pred cccccccccCCcccCCCccchhchhhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcC
Q 014240 11 VSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKR 90 (428)
Q Consensus 11 ~~S~~t~~sd~~s~~~~~~~~~~~~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikk 90 (428)
-+..+|+.+|.+++.++.+.+.|.++++.+.+|....|.++||+++|+.|+.+++.+..++|+.++++||.+.++++++|
T Consensus 35 ~S~~~~~~ed~~~il~~s~~~~dl~~~~~d~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k 114 (427)
T KOG2842|consen 35 GSMDSTSAEDGSGILDESGTQEDLEEKLKDDLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNK 114 (427)
T ss_pred ccccccccccchhhhcccccHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcC
Confidence 56778888899999888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHcCCChHHHHHHHHH--
Q 014240 91 GSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVITFVGGNDPEETERTMQI-- 167 (428)
Q Consensus 91 g~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~-~~r~~~~~aLai~~fv~~~d~~~~~~~m~~-- 167 (428)
|+.+|+.+|+.+++++|+|+|++..++++..+..|.+..++.+.+.+ ..|+.|+.|||++|++.+.|+++...++.+
T Consensus 115 ~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~ 194 (427)
T KOG2842|consen 115 PKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLE 194 (427)
T ss_pred CccHHHHHHHHHHHHHHHhccCcchhhHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876 789999999999999999998887766655
Q ss_pred -HHHHhccCC--CCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 168 -MWQIVHPKL--GSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 168 -l~~i~~~~~--g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
.|..++..+ +..+++ .+...++.+|+.+|+++||+++..... ...+.+.|+++.+|.+.++++|+||||++|++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~a~~Lti~~~~~~~-~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~ 272 (427)
T KOG2842|consen 195 ESFGAVYLEDDETVVVCA-CQNLGLLLTCLTAWSLLLTICPEALSE-QLDAALAPKLPLLLSSERVNERIAAGETLALLF 272 (427)
T ss_pred HHHHHhhcccCCCccccc-cchhHHHHHHHHHHHHHHHcCccchhh-HHHHHhccchHHHhccchhhhhhhhhhhHHHHH
Confidence 455444333 233333 356689999999999999999887654 334457799999999999999999999999999
Q ss_pred HhcccccccccccCCCCCChhhhhhhhchHHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHhcCCCCceeEEE
Q 014240 245 ETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKI 324 (428)
Q Consensus 245 E~~~~~~~~~e~~~~~d~~~~~y~~~~~~~~~l~~~l~~La~d~s~K~~aKkDrk~qRs~FRdIl~~iE~g~~Pe~~ik~ 324 (428)
|+.+...+ .+..++.++|++.|+.|++| |+|+++|||||.||++||+|+++||++++|+++|||
T Consensus 273 e~~q~~~~---------------~f~~~d~e~l~~~lr~latd-ssKs~~kkdkR~qr~~fr~vl~~iee~~~pe~sVRf 336 (427)
T KOG2842|consen 273 ELAQDSEF---------------DFIYPDMEQLLSTLRDLATD-SSKSRAKKDRRVQRSVFRDVLQTIEERDIPEESVRI 336 (427)
T ss_pred HHHhcccc---------------cccCCCHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHhcccCchhheee
Confidence 99874221 12234678999999999998 699999999999999999999999999999999999
Q ss_pred cCeeEEEchhHHHHHHHHHHHHhhhhHHhhhhhChhHHhhhCCCcccccc---ccccccCChhhhhhccCCCchhhhHhh
Q 014240 325 GGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYL---SVAEHHISSTDKRMYKSPNSVVNKART 401 (428)
Q Consensus 325 g~e~L~idsW~~~~ql~~lr~~Lg~G~~~Hl~~N~~lrdif~l~p~~~~~---~~~~~~~s~~ek~~~~s~nsa~~KaRt 401 (428)
|+++|++|||.+++||++||.+||+||+.|||+|+|||+|||++|++... ..+.+|.+++|+|+| |+|+||+||
T Consensus 337 G~etl~LDSW~~~~~Y~~~~~VLGsGm~~~L~~nEflRdvF~lg~~~~~l~~~~~~~~K~sr~erHl~---naAAfKaRt 413 (427)
T KOG2842|consen 337 GQETLYLDSWAKKLRYDTFKEVLGSGMSEQLQKNEFLRDVFGLGGPPRALDAAFLKDNKDSRFERHLY---NAAAFKART 413 (427)
T ss_pred cceeeehhHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHHHhcCCCCCCcccchhcccchHHHHHHHh---hhhhHHHHh
Confidence 99999999999999999999999999999999999999999998655442 246778999999998 999999999
Q ss_pred HHHHhhhhhhhc
Q 014240 402 QKLNKQRMLSEG 413 (428)
Q Consensus 402 ~~r~K~R~~~~~ 413 (428)
+.|+|+|..++.
T Consensus 414 ~~R~k~RDKRsd 425 (427)
T KOG2842|consen 414 KARSKDRDKRAD 425 (427)
T ss_pred Hhhhhhhhhhhc
Confidence 999999987654
No 2
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=100.00 E-value=2.6e-66 Score=516.44 Aligned_cols=266 Identities=41% Similarity=0.582 Sum_probs=239.9
Q ss_pred hhchhhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeec
Q 014240 31 QLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTV 110 (428)
Q Consensus 31 ~~~~~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~l 110 (428)
+.+.+++|+++||.|++||+++|++||++|+.+|.++|+++|+.++++||+++|++++|||+++|+.||+++++|+|+|+
T Consensus 38 ~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 38 QEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL 117 (309)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHcCCChHHHH---HHHHHHHHHhccCC-CCc-cccCC
Q 014240 111 GYGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVITFVGGNDPEETE---RTMQIMWQIVHPKL-GSN-VVATR 184 (428)
Q Consensus 111 g~~~~~eei~~~~~~~L~~~l~d~s~~-~~r~~~~~aLai~~fv~~~d~~~~~---~~m~~l~~i~~~~~-g~~-~~a~~ 184 (428)
|+|+++++||+.+.|+|+++++|++.+ .+|++|+.|||+|||+||.++++++ ++|+.+|....++. |.. ++..+
T Consensus 118 g~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 118 GAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 999999999999999999999999865 7789999999999999999999998 66666676666653 442 34446
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcccccccccccCCCCCCh
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSR 264 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~d~~~ 264 (428)
++++|++|||++|+||||++|++++. +.++.++|+|++||+|+|++|||||||+||||||+++.. +++
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~--~~~--------- 265 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDH--EED--------- 265 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc--ccc---------
Confidence 78999999999999999999999887 789999999999999999999999999999999999831 111
Q ss_pred hhhhhhhchHHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHh
Q 014240 265 EEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLE 313 (428)
Q Consensus 265 ~~y~~~~~~~~~l~~~l~~La~d~s~K~~aKkDrk~qRs~FRdIl~~iE 313 (428)
+.++++++|+++|++||++ |+|+++|||||+||++||||++|||
T Consensus 266 ----~~~~~~~~l~~~l~~La~d-S~K~~sKkdrk~qRs~Frdil~~iE 309 (309)
T PF05004_consen 266 ----FLYEDMEELLEQLRELATD-SSKSRSKKDRKQQRSSFRDILTTIE 309 (309)
T ss_pred ----ccccCHHHHHHHHHHHHHh-ccCccchhHHHHHHHHHHHHHHhhC
Confidence 2234678999999999998 5999999999999999999999997
No 3
>PF04836 IFRD_C: Interferon-related protein conserved region; InterPro: IPR006921 This domain, primarily C-terminal, is found in a family of proteins thought to be involved in regulating gene activity in the proliferative and/or differentiative pathways induced by NGF [].
Probab=99.51 E-value=7.6e-15 Score=108.56 Aligned_cols=52 Identities=38% Similarity=0.482 Sum_probs=43.9
Q ss_pred ChhHHhhhCCCccccccccccccCChhhhhhccCCCchhhhHhhHHHHhhhhhhh
Q 014240 358 NEFLHDVFGFTPKRKYLSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQRMLSE 412 (428)
Q Consensus 358 N~~lrdif~l~p~~~~~~~~~~~~s~~ek~~~~s~nsa~~KaRt~~r~K~R~~~~ 412 (428)
|++|||||+|||++........++++.|||++ |+|+||+|||+|||+|+...
T Consensus 1 Ne~lRdiF~Lgp~~~~~~~~~~k~~K~er~~~---Nsaa~KARt~~R~K~RDKR~ 52 (54)
T PF04836_consen 1 NEFLRDIFDLGPPLLAEEHKNMKISKRERHLY---NSAAFKARTQARGKQRDKRS 52 (54)
T ss_pred ChHHHHHcCCCCccccccccccchhHHHHHhh---hHHHHHHHHHHHHhhhhhhc
Confidence 89999999999998633345667788888886 99999999999999998653
No 4
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=97.71 E-value=0.0017 Score=65.98 Aligned_cols=291 Identities=10% Similarity=0.001 Sum_probs=168.7
Q ss_pred cccCCcccCCCccchhc-hhhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHH
Q 014240 17 MRSDRMSVSGTEEVQLE-KDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSRE 95 (428)
Q Consensus 17 ~~sd~~s~~~~~~~~~~-~~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E 95 (428)
..+.+.++...++.+.. .+.+..-...+.++|...++.-.|.-..+.|-++++++++.-.-+++.+.-.....++...+
T Consensus 45 ~~~il~~s~~~~dl~~~~~d~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~ 124 (427)
T KOG2842|consen 45 GSGILDESGTQEDLEEKLKDDLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAA 124 (427)
T ss_pred chhhhcccccHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHH
Confidence 34444443333334322 24444444557889999999999999999999999999998777777777777888888999
Q ss_pred HHHHHHHHhHheeecCCCCc-------hHHHHHhhhHH-HHHHhh--------cCC-ChHHHHHHHHHHH-HHHHHc--C
Q 014240 96 IALASHAIGLLALTVGYGEN-------SREILEESVAP-ISQALK--------SGF-DSSKIASLLECLA-VITFVG--G 155 (428)
Q Consensus 96 ~~lA~~~l~Ll~l~lg~~~~-------~eei~~~~~~~-L~~~l~--------d~s-~~~~r~~~~~aLa-i~~fv~--~ 155 (428)
+.+.+.++.+...|.|...- .--+.++...+ ...++. +.. +...--+++.|+- .-.++. .
T Consensus 125 ~~~g~~~vqlg~~q~~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~ 204 (427)
T KOG2842|consen 125 ALIGLLCVQAGPGQEEEEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLED 204 (427)
T ss_pred HHHHHHHHhccCcchhhHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999888887775310 00011111111 111111 111 1111111222211 111111 1
Q ss_pred CC-------hHH-HHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcC
Q 014240 156 ND-------PEE-TERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDK 227 (428)
Q Consensus 156 ~d-------~~~-~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s 227 (428)
.+ ... ..-.....|..+=. +.+ .+....+-++ .-.-+|.|..+.+.
T Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~a~~Lt-----i~~-~~~~~~~~~~--------------------~~p~i~~lLs~~~v 258 (427)
T KOG2842|consen 205 DETVVVCACQNLGLLLTCLTAWSLLLT-----ICP-EALSEQLDAA--------------------LAPKLPLLLSSERV 258 (427)
T ss_pred CCCccccccchhHHHHHHHHHHHHHHH-----cCc-cchhhHHHHH--------------------hccchHHHhccchh
Confidence 11 001 11111123432211 000 1111222222 11446889999999
Q ss_pred CChHHHHHHHHHHHHHHHhcccccccccccCCCCCChhhhhhhhchHHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHH
Q 014240 228 DDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKD 307 (428)
Q Consensus 228 ~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~d~~~~~y~~~~~~~~~l~~~l~~La~d~s~K~~aKkDrk~qRs~FRd 307 (428)
+.+.++.++++.|+.+-+-++.+....+ . +..-.++..|...+++ +.+++.||++|.|+..||+
T Consensus 259 n~r~aa~et~a~l~e~~q~~~~~f~~~d-----------~----e~l~~~lr~latdssK-s~~kkdkR~qr~~fr~vl~ 322 (427)
T KOG2842|consen 259 NERIAAGETLALLFELAQDSEFDFIYPD-----------M----EQLLSTLRDLATDSSK-SRAKKDRRVQRSVFRDVLQ 322 (427)
T ss_pred hhhhhhhhhHHHHHHHHhcccccccCCC-----------H----HHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875444222 1 1235688999999999 6999999999999999999
Q ss_pred HHHHHhcCC-----CCceeEEEc----------CeeEEEchhHHHHH-HHHHHHHhhhh
Q 014240 308 ILEFLEYGY-----CPETSTKIG----------GESLKTSNWSQLIQ-LNFLKHFLGGG 350 (428)
Q Consensus 308 Il~~iE~g~-----~Pe~~ik~g----------~e~L~idsW~~~~q-l~~lr~~Lg~G 350 (428)
++.-=.-++ +|+ ++.+. -..+.=.+-..++| -.+||.+||=|
T Consensus 323 ~iee~~~pe~sVRfG~e-tl~LDSW~~~~~Y~~~~~VLGsGm~~~L~~nEflRdvF~lg 380 (427)
T KOG2842|consen 323 TIEERDIPEESVRIGQE-TLYLDSWAKKLRYDTFKEVLGSGMSEQLQKNEFLRDVFGLG 380 (427)
T ss_pred HHhcccCchhheeecce-eeehhHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHHHhcC
Confidence 997554432 233 23321 01111223344444 46899999955
No 5
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.43 E-value=0.0094 Score=56.46 Aligned_cols=195 Identities=17% Similarity=0.148 Sum_probs=110.0
Q ss_pred HHHHHHHh----cccchHHHHHHHHHHHHHHHhhhhhhhhhh---hHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeec
Q 014240 38 LDEALDAL----YEKRGSTREKALSSIIEAFNNTLQHQFVEK---KFATLLHQCLSSIKRGSSREIALASHAIGLLALTV 110 (428)
Q Consensus 38 l~~~id~l----~eKr~stR~~aL~~l~~al~~~~~~~fi~~---~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~l 110 (428)
++.++..+ .+..=+.|.+||..|..++..+...++... ..-+++..+.+++.--...=...|+.++..++..+
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444 344456699999999999887722222222 22244455666554322333567888999999999
Q ss_pred CCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHH
Q 014240 111 GYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPII 190 (428)
Q Consensus 111 g~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~ 190 (428)
|.. -+..++.+.|+|...+.++.. ..+.++..||-.++-.+.. ...+ .+.++..... ..+|.+-
T Consensus 85 ~~~--~~~~~~~~l~~Ll~~~~~~~~-~i~~~a~~~L~~i~~~~~~-~~~~--~~~~l~~~~~----------~Kn~~vR 148 (228)
T PF12348_consen 85 GSH--FEPYADILLPPLLKKLGDSKK-FIREAANNALDAIIESCSY-SPKI--LLEILSQGLK----------SKNPQVR 148 (228)
T ss_dssp GGG--GHHHHHHHHHHHHHGGG---H-HHHHHHHHHHHHHHTTS-H---HH--HHHHHHHHTT-----------S-HHHH
T ss_pred hHh--HHHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHCCc-HHHH--HHHHHHHHHh----------CCCHHHH
Confidence 864 456678899998887777543 3445555555433332220 1121 1333333332 2567787
Q ss_pred HHHHHHHHHhHhcCC--CCccch-hhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 191 TAMVSAWSFLLTTMD--GCSLDS-KKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 191 ~AAL~aW~lLlT~~~--~~~~~~-~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
..++..-..++...+ ...+.. ..++..++.+..+|...+.+||-+|=+++..+|....
T Consensus 149 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 149 EECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 888877777777766 233322 2346788999999999999999999999999998864
No 6
>PRK09687 putative lyase; Provisional
Probab=97.06 E-value=0.038 Score=54.86 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=106.0
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
..+..++.|.++....|..+...|... .-...+..+.+.++..+...+..|+.+++-+ |...
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~------------~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l----g~~~-- 85 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR------------GGQDVFRLAIELCSSKNPIERDIGADILSQL----GMAK-- 85 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc------------CcchHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCc--
Confidence 466778888999999999988765321 1144455555656666788899999999884 3211
Q ss_pred HHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHH
Q 014240 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (428)
Q Consensus 117 eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~a 196 (428)
..-....|.|..++....++.+|.+++.+||-++ ...........+.+....+ .+++.|..+|+.+
T Consensus 86 -~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~---~~~~~~~~~a~~~l~~~~~----------D~~~~VR~~a~~a 151 (280)
T PRK09687 86 -RCQDNVFNILNNLALEDKSACVRASAINATGHRC---KKNPLYSPKIVEQSQITAF----------DKSTNVRFAVAFA 151 (280)
T ss_pred -cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc---ccccccchHHHHHHHHHhh----------CCCHHHHHHHHHH
Confidence 1134577888887677777899999999987653 2221111112222211111 2456677777666
Q ss_pred HHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 197 W~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
-+ .+.. +..++.|..+|..+|.+||..|-++|+-+
T Consensus 152 Lg---------~~~~---~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 152 LS---------VIND---EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred Hh---------ccCC---HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 54 2222 36789999999999999999999999876
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.84 Score=52.51 Aligned_cols=181 Identities=16% Similarity=0.146 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHH
Q 014240 50 GSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQ 129 (428)
Q Consensus 50 ~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~ 129 (428)
-+-|.+||-+|--+ ..-.++.+......+++.++..++-..+.=+..|+.++|-++..+.++ -..-+.+..|++.-
T Consensus 362 w~~R~AaL~Als~i--~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~--iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 362 WKERHAALLALSVI--AEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE--IQKKHHERLPPALI 437 (1075)
T ss_pred HHHHHHHHHHHHHH--HcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH--HHHHHHHhccHHHH
Confidence 35599999766433 233567788889999999999998888999999999999999999863 34555565554433
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-HhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCc
Q 014240 130 ALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQ-IVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCS 208 (428)
Q Consensus 130 ~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~-i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~ 208 (428)
.+.|.+. ..|+.+--|-+++.|....+.+.+..-++.+.+ .+.- ... +..+.|...|+.+-|..+......
T Consensus 438 ~~ld~~~-~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~-L~~-----~~~~~v~e~vvtaIasvA~AA~~~- 509 (1075)
T KOG2171|consen 438 ALLDSTQ-NVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLL-LLQ-----SSKPYVQEQAVTAIASVADAAQEK- 509 (1075)
T ss_pred HHhcccC-chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-Hhc-----CCchhHHHHHHHHHHHHHHHHhhh-
Confidence 3333332 223334446677888866666666554444333 2211 111 366788888888888888776543
Q ss_pred cchhhHHhhHHHHHhhhcCCC-hHHHHHHH---HHHHHH
Q 014240 209 LDSKKWQQSISYFSTLLDKDD-RSIRIAAG---EALALI 243 (428)
Q Consensus 209 ~~~~~~~~~l~~L~~lL~s~d-~~VRiAAG---EaiALl 243 (428)
+. ...+..||.|...|...+ -+.|...| |+|.+|
T Consensus 510 F~-pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli 547 (1075)
T KOG2171|consen 510 FI-PYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI 547 (1075)
T ss_pred hH-hHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence 22 456788999999998765 66666666 555555
No 8
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.35 E-value=0.26 Score=39.00 Aligned_cols=87 Identities=21% Similarity=0.259 Sum_probs=62.8
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhc
Q 014240 124 VAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTT 203 (428)
Q Consensus 124 ~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~ 203 (428)
.|.|.+.+....++..|..++.+|| .-... +....+...+. .+++.|..+|+.+.+-+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~------~~~~~---~~~~~L~~~l~----------d~~~~vr~~a~~aL~~i--- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG------ELGDP---EAIPALIELLK----------DEDPMVRRAAARALGRI--- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH------CCTHH---HHHHHHHHHHT----------SSSHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH------HcCCH---hHHHHHHHHHc----------CCCHHHHHHHHHHHHHh---
Confidence 3677788877788888999999987 21222 44555555552 26788999999998854
Q ss_pred CCCCccchhhHHhhHHHHHhhhcCC-ChHHHHHHHHHHH
Q 014240 204 MDGCSLDSKKWQQSISYFSTLLDKD-DRSIRIAAGEALA 241 (428)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~lL~s~-d~~VRiAAGEaiA 241 (428)
.. ++.++.|..+|.++ +..||-+|-++||
T Consensus 59 ------~~---~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ------GD---PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HH---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CC---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 22 47889999988776 5678999999986
No 9
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.97 E-value=1.4 Score=50.07 Aligned_cols=180 Identities=13% Similarity=0.175 Sum_probs=106.3
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCC-HHHHHHHHHHHhHheeecCCCCchHHH
Q 014240 41 ALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVGYGENSREI 119 (428)
Q Consensus 41 ~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~-~~E~~lA~~~l~Ll~l~lg~~~~~eei 119 (428)
+...+..|.=+.|.+||+.+...+...- --+...+.+++...++.+-+.. -.=..+|+.++.++|--++.+ ....
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~--~~~~ 333 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL--FRKY 333 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh--hHHH
Confidence 4457778888999999999999998655 2344566777777777554443 333678999999999988864 2223
Q ss_pred HHhhhHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHH--HHHHH
Q 014240 120 LEESVAPISQALKSGFDS--SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPII--TAMVS 195 (428)
Q Consensus 120 ~~~~~~~L~~~l~d~s~~--~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~--~AAL~ 195 (428)
-..+.|.|..-+.+.-.. ..-..|+.+.+- +. -+...++++.+.... .+|.+- +..+.
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-----s~---~l~~~~~~I~e~lk~----------knp~~k~~~~~~l 395 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILN-----ST---PLSKMSEAILEALKG----------KNPQIKGECLLLL 395 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHh-----cc---cHHHHHHHHHHHhcC----------CChhhHHHHHHHH
Confidence 334455544433332221 222333333322 11 122334444333322 233333 33444
Q ss_pred HHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 196 aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
.|.|=-+ ++.....+.....+|.+.......+.+||.||-|++|-++
T Consensus 396 ~r~~~~~--~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 396 DRKLRKL--GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred HHHHhhc--CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 4444433 3222222345677888888888889999999999999887
No 10
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.72 E-value=1.1 Score=44.57 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhh-
Q 014240 135 FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKK- 213 (428)
Q Consensus 135 s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~- 213 (428)
.++..|..++.|||++|.+.- +-..+.+..|+..+.. +++.|...||++-.=++..-+...+....
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~---~~a~~~l~l~~~~~~~----------~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDK---ELAKEHLPLFLQALQK----------DDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 445889999999999999955 4455667777777732 45688889999887666554443332221
Q ss_pred ------HHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 214 ------WQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 214 ------~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
....+..|...|++.+.++|.+|+|.+|=|+=.++
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 23556778889999999999999999998876665
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.64 E-value=0.19 Score=41.40 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=69.5
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHH
Q 014240 123 SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE-----RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAW 197 (428)
Q Consensus 123 ~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~-----~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW 197 (428)
..|.|...+.++. ...|..++.||+.++.. .++... ..++.+..++.. +++.+...|+.+.
T Consensus 8 ~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~l~~~l~~----------~~~~v~~~a~~~L 73 (120)
T cd00020 8 GLPALVSLLSSSD-ENVQREAAWALSNLSAG---NNDNIQAVVEAGGLPALVQLLKS----------EDEEVVKAALWAL 73 (120)
T ss_pred ChHHHHHHHHcCC-HHHHHHHHHHHHHHhcC---CHHHHHHHHHCCChHHHHHHHhC----------CCHHHHHHHHHHH
Confidence 7788888887665 56667777777665544 222222 222334444432 4568888888888
Q ss_pred HHhHhcCCCCccchhhHH-hhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 198 SFLLTTMDGCSLDSKKWQ-QSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 198 ~lLlT~~~~~~~~~~~~~-~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
+-|....+. .....++ ..++.|..+|+..+..+|..|--++.-|.|
T Consensus 74 ~~l~~~~~~--~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 74 RNLAAGPED--NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHccCcHH--HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888654332 1112232 469999999999999999999888876653
No 12
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.41 E-value=1.3 Score=47.51 Aligned_cols=193 Identities=16% Similarity=0.175 Sum_probs=122.1
Q ss_pred HHHHHhccc-chHHHHHHHHHHHHHHHhhh-hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchH
Q 014240 40 EALDALYEK-RGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (428)
Q Consensus 40 ~~id~l~eK-r~stR~~aL~~l~~al~~~~-~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~e 117 (428)
..+..+..+ +...|-..++-++.+..+.. ...++.+ .-+++.+++.++..+.-=+.-|+.++.-++.+-.+ ..
T Consensus 163 ~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~--sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g---~~ 237 (503)
T PF10508_consen 163 SKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN--SGLLDLLLKELDSDDILVQLNALELLSELAETPHG---LQ 237 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh--ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH---HH
Confidence 334444444 66679999988888776443 2232321 23999999999764444466777888887773332 22
Q ss_pred HHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC---CChHHHH----HHHHHHHHHhccCCCCccccCCCCHHH
Q 014240 118 EILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGG---NDPEETE----RTMQIMWQIVHPKLGSNVVATRPSAPI 189 (428)
Q Consensus 118 ei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~---~d~~~~~----~~m~~l~~i~~~~~g~~~~a~~~~~~l 189 (428)
=+.+ .+.+.|...+.+..... |...+.-.|.+-|+|. .++..+. ..++.++..+.+ .++..
T Consensus 238 yL~~~gi~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s----------~d~~~ 306 (503)
T PF10508_consen 238 YLEQQGIFDKLSNLLQDSEEDP-RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES----------QDPTI 306 (503)
T ss_pred HHHhCCHHHHHHHHHhccccCC-cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC----------CChhH
Confidence 2333 36677777776553322 3334444555555432 1444443 333445554443 55678
Q ss_pred HHHHHHHHHHhHhcCCCCccc----hhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 190 ITAMVSAWSFLLTTMDGCSLD----SKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 190 ~~AAL~aW~lLlT~~~~~~~~----~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
..+|+.+||.+.++..+...- ...++..+.++.....+...++|+.+=.+++.+++...
T Consensus 307 ~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 307 REVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 899999999999887775433 22345567777777888899999999999999998764
No 13
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=2.9 Score=48.30 Aligned_cols=181 Identities=20% Similarity=0.183 Sum_probs=115.1
Q ss_pred ccchHHHHHHHHHHHHHHHh-----hhhhhhhhhhHhHHHHHHHhhhcCCCHH--------------H--HHHHHHHHhH
Q 014240 47 EKRGSTREKALSSIIEAFNN-----TLQHQFVEKKFATLLHQCLSSIKRGSSR--------------E--IALASHAIGL 105 (428)
Q Consensus 47 eKr~stR~~aL~~l~~al~~-----~~~~~fi~~~~~TL~~~~~~sikkg~~~--------------E--~~lA~~~l~L 105 (428)
+.-.++|..||+-|+..... |..+.|+ .+|+-.++...--+... | ...|.+++-.
T Consensus 260 ~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~----~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDr 335 (1075)
T KOG2171|consen 260 ELENSIRHLALEFLVSLSEYAPAMCKKLALLG----HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDR 335 (1075)
T ss_pred cccHHHHHHHHHHHHHHHHhhHHHhhhchhhh----ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHH
Confidence 44578899999988766543 3333344 55555665555433211 1 5799999999
Q ss_pred heeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCC
Q 014240 106 LALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRP 185 (428)
Q Consensus 106 l~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~ 185 (428)
+++.+|+ ..++--++|.+.+.+++.. ...|-+++.||+++. ....+-+...+.=+..++-+ |- ..+
T Consensus 336 lA~~L~g----~~v~p~~~~~l~~~l~S~~-w~~R~AaL~Als~i~---EGc~~~m~~~l~~Il~~Vl~--~l----~Dp 401 (1075)
T KOG2171|consen 336 LALHLGG----KQVLPPLFEALEAMLQSTE-WKERHAALLALSVIA---EGCSDVMIGNLPKILPIVLN--GL----NDP 401 (1075)
T ss_pred HHhcCCh----hhehHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHh--hc----CCC
Confidence 9999995 4666666666666655443 345666777776543 22223333333334443432 11 148
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCC-ChHHHHHHHHHHHHHHHh
Q 014240 186 SAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKD-DRSIRIAAGEALALILET 246 (428)
Q Consensus 186 ~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~-d~~VRiAAGEaiALl~E~ 246 (428)
.|-|.-||+.|-|-+-|.+.+.--. +.-+..+|.|...|++. ++.|+..|+-++-=.+|-
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk-~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~ 462 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQK-KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE 462 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHH-HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh
Confidence 8999999999999999998886432 33445567899999887 568888877666544444
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.88 E-value=3.2 Score=43.96 Aligned_cols=183 Identities=14% Similarity=0.241 Sum_probs=106.9
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
+..+...+..+..++.-.|..|+..+...+.. -++.+... +++.+.+.++-....=+..|+.++.-+ ...+ +
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~--~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~-~ 184 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRK--DPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI--KCND-D 184 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTH-H
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc--CHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH--ccCc-c
Confidence 44667778888899999999999888887765 23333222 566666777434322223333333333 1110 0
Q ss_pred chHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHH--HHHHHHHHHHhccCCCCccccCCCCHHHHHH
Q 014240 115 NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEET--ERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (428)
Q Consensus 115 ~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~--~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~A 192 (428)
....+...+.+.|.+++ ...++-..+. .+-++..++..++.+. ...++.+...+.+ .++.|+-.
T Consensus 185 ~~~~~~~~~~~~L~~~l-~~~~~~~q~~---il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s----------~~~~V~~e 250 (526)
T PF01602_consen 185 SYKSLIPKLIRILCQLL-SDPDPWLQIK---ILRLLRRYAPMEPEDADKNRIIEPLLNLLQS----------SSPSVVYE 250 (526)
T ss_dssp HHTTHHHHHHHHHHHHH-TCCSHHHHHH---HHHHHTTSTSSSHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred hhhhhHHHHHHHhhhcc-cccchHHHHH---HHHHHHhcccCChhhhhHHHHHHHHHHHhhc----------cccHHHHH
Confidence 00022333333444443 2233433333 4555567777677666 5677777666653 34566655
Q ss_pred HHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 193 AL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
|+..-. ...+.. ..++..++.|..+|.+++.++|..|=++|..+...
T Consensus 251 ~~~~i~---~l~~~~----~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 251 AIRLII---KLSPSP----ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp HHHHHH---HHSSSH----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred HHHHHH---Hhhcch----HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 555543 222222 25678899999999999999999999998887544
No 15
>PF05536 Neurochondrin: Neurochondrin
Probab=93.17 E-value=3.9 Score=44.54 Aligned_cols=193 Identities=15% Similarity=0.154 Sum_probs=112.7
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhh----hh-HhHHHHHHHhhhcCCC---HHH-HHHHHHHHhH
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVE----KK-FATLLHQCLSSIKRGS---SRE-IALASHAIGL 105 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~----~~-~~TL~~~~~~sikkg~---~~E-~~lA~~~l~L 105 (428)
.+.+++|+..|..|+-+.|-.||-=+.+.+...-...... +. =...++.++++-...+ ..+ ..||..++.-
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999997779999965544443222111111 11 1466777777654332 333 4688888887
Q ss_pred heeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHH-----HHHHHHhccCCCCcc
Q 014240 106 LALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTM-----QIMWQIVHPKLGSNV 180 (428)
Q Consensus 106 l~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m-----~~l~~i~~~~~g~~~ 180 (428)
+|. .+.-.++.=+-.-.|+|..++...++......|..||..++ + .++.....+ ..+.+++..
T Consensus 84 f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia---s-~~~G~~aLl~~g~v~~L~ei~~~------ 151 (543)
T PF05536_consen 84 FCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA---S-SPEGAKALLESGAVPALCEIIPN------ 151 (543)
T ss_pred HcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH---c-CcHhHHHHHhcCCHHHHHHHHHh------
Confidence 776 32222234455678999999988887444455666665544 2 222222222 234444432
Q ss_pred ccCCCCHHHHHHHHHHHHHhHhcCCCCccc--hhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 181 VATRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 181 ~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~--~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
.+...-.|+..|..|++........ ...+...++++.......+-.-+..+-+.++.++
T Consensus 152 -----~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L 212 (543)
T PF05536_consen 152 -----QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFL 212 (543)
T ss_pred -----CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhc
Confidence 2356778999999999987743222 2233455677777776665555555544444444
No 16
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.08 E-value=0.17 Score=32.92 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.7
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 218 ISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 218 l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
+|.|..+|..++.+||.+|.++|+-|.|.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999988774
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.05 E-value=4.7 Score=50.04 Aligned_cols=185 Identities=12% Similarity=0.062 Sum_probs=114.2
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhhh-hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchH
Q 014240 39 DEALDALYEKRGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (428)
Q Consensus 39 ~~~id~l~eKr~stR~~aL~~l~~al~~~~-~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~e 117 (428)
...++.|..-+...|+.|+..|..+-...- ....|- -.-.+..+.+.++.|+.+-+.-|+.+++-+|.. . ++..
T Consensus 449 p~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIi--eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~--~-~qir 523 (2102)
T PLN03200 449 QLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAIT--AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH--S-EDIR 523 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--c-HHHH
Confidence 334444544344455666554433322111 111111 134566677777777766677778888887763 1 2233
Q ss_pred HHH-H-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHH
Q 014240 118 EIL-E-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (428)
Q Consensus 118 ei~-~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~ 195 (428)
.+. + ...|+|..++.+++ ...+..++.+|+-++. ..+.+.+ ..++.++.+ +++.+...+|.
T Consensus 524 ~iV~~aGAIppLV~LL~sgd-~~~q~~Aa~AL~nLi~--~~d~~~I----~~Lv~LLls----------dd~~~~~~aL~ 586 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGG-PKGQEIAAKTLTKLVR--TADAATI----SQLTALLLG----------DLPESKVHVLD 586 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHh--ccchhHH----HHHHHHhcC----------CChhHHHHHHH
Confidence 433 3 58899999988774 4445556666655443 3344333 345555533 44678888899
Q ss_pred HHHHhHhcCCCCccchhh--HHhhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 196 AWSFLLTTMDGCSLDSKK--WQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 196 aW~lLlT~~~~~~~~~~~--~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
+-+-+++..+........ -...+|.|.+||++.+..++..|..+|+=+|-
T Consensus 587 vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 587 VLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred HHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 999999887775432111 13679999999999999999999999888875
No 18
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=92.57 E-value=3.4 Score=46.59 Aligned_cols=187 Identities=17% Similarity=0.116 Sum_probs=114.1
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHH-HHhhhcCCCHHH-HHHHHHHHhHheeecCC
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQ-CLSSIKRGSSRE-IALASHAIGLLALTVGY 112 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~-~~~sikkg~~~E-~~lA~~~l~Ll~l~lg~ 112 (428)
+..|-...+......-..|.+.++.+=..+...++..|.+. +.+++.. +.. ..-+ +..|++.+..++.+.|.
T Consensus 478 ~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~-~~~l~~~~l~d-----~v~~Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 478 NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEK-LAELLRTWLPD-----HVYSIREAAARNLPALVETFGS 551 (759)
T ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHH-HHHHHHhhhhh-----hHHHHHHHHHHHhHHHHHHhCc
Confidence 34444444444344344488888888777777775444444 3333332 221 0112 34578889999999994
Q ss_pred CCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHH
Q 014240 113 GENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (428)
Q Consensus 113 ~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~A 192 (428)
. ---....|.+.....++ .--.|..++.|+..+.=++|.+. -.+..+-.+|.... .+.|.|-..
T Consensus 552 ~----w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei-~~~~Llp~~~~l~~----------D~vanVR~n 615 (759)
T KOG0211|consen 552 E----WARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEI-TCEDLLPVFLDLVK----------DPVANVRIN 615 (759)
T ss_pred c----hhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHH-HHHHHhHHHHHhcc----------CCchhhhhh
Confidence 2 11222333332222222 23678888889887777777543 23456666666442 255678888
Q ss_pred HHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 193 AL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
++...--++..+...... ....|.+..+....+++||.+|-.+.+++-+..
T Consensus 616 vak~L~~i~~~L~~~~~~----~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 616 VAKHLPKILKLLDESVRD----EEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred HHHHHHHHHhhcchHHHH----HHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 877777777777765443 245677777777889999999999999997764
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.36 E-value=3 Score=44.16 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=63.2
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChH
Q 014240 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE 159 (428)
Q Consensus 80 L~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~ 159 (428)
.+..+.+-+....+.-+.+|+++++-++ . .++.+.+.|.+.+.+.++.. -+|..|+.|+.=+.... ++
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~-----~~~~~~l~~~v~~ll~~~~~-~VRk~A~~~l~~i~~~~---p~ 147 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR---T-----PEMAEPLIPDVIKLLSDPSP-YVRKKAALALLKIYRKD---PD 147 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH----S-----HHHHHHHHHHHHHHHHSSSH-HHHHHHHHHHHHHHHHC---HC
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc---c-----cchhhHHHHHHHHHhcCCch-HHHHHHHHHHHHHhccC---HH
Confidence 4445555565555777899999999977 1 58889999999999886644 66666665665544443 33
Q ss_pred HHHH-HHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHh
Q 014240 160 ETER-TMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFL 200 (428)
Q Consensus 160 ~~~~-~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lL 200 (428)
.+.. ..+.+...+.. .++.|+.+|+.+..-+
T Consensus 148 ~~~~~~~~~l~~lL~d----------~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 148 LVEDELIPKLKQLLSD----------KDPSVVSAALSLLSEI 179 (526)
T ss_dssp CHHGGHHHHHHHHTTH----------SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccC----------CcchhHHHHHHHHHHH
Confidence 3333 34555554422 4467777777766655
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=92.21 E-value=5.8 Score=49.29 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=102.5
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChH
Q 014240 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE 159 (428)
Q Consensus 80 L~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~ 159 (428)
-++.+..-++.|+.+.+..|+.++.-+|-.-.+.. ..-+.....|||...+..++... +..+++||+-++- ++ ..+
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~-~avv~agaIpPLV~LLss~~~~v-~keAA~AL~nL~~-~~-~~~ 685 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLC-ESLATDEIINPCIKLLTNNTEAV-ATQSARALAALSR-SI-KEN 685 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHH-HHHHHcCCHHHHHHHHhcCChHH-HHHHHHHHHHHHh-CC-CHH
Confidence 45667777888888888888888887775333211 23456678999999988765554 4567778876664 33 333
Q ss_pred HHHHHH-----HHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHH
Q 014240 160 ETERTM-----QIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIR 233 (428)
Q Consensus 160 ~~~~~m-----~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VR 233 (428)
...... ..+-..+. ..+..++..|+.+-+.++..-+... ++. ...+|.|+++|.+.+..+|
T Consensus 686 q~~~~v~~GaV~pL~~LL~----------~~d~~v~e~Al~ALanLl~~~e~~~---ei~~~~~I~~Lv~lLr~G~~~~k 752 (2102)
T PLN03200 686 RKVSYAAEDAIKPLIKLAK----------SSSIEVAEQAVCALANLLSDPEVAA---EALAEDIILPLTRVLREGTLEGK 752 (2102)
T ss_pred HHHHHHHcCCHHHHHHHHh----------CCChHHHHHHHHHHHHHHcCchHHH---HHHhcCcHHHHHHHHHhCChHHH
Confidence 322222 22333332 2556889999999999987755421 222 4669999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 014240 234 IAAGEALALILETG 247 (428)
Q Consensus 234 iAAGEaiALl~E~~ 247 (428)
--|.-+|+-|+.-.
T Consensus 753 ~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 753 RNAARALAQLLKHF 766 (2102)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999888777554
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.03 E-value=2.9 Score=48.13 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
+++.|..+|+.+-+-+ ++ ++.++.|..+|+.++..||.+|-.+|+-+
T Consensus 819 ~d~~VR~~Aa~aL~~l----~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 819 SAWQVRQGAARALAGA----AA--------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CChHHHHHHHHHHHhc----cc--------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 4567888887776532 11 25678999999999999999999999875
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.60 E-value=13 Score=39.89 Aligned_cols=196 Identities=14% Similarity=0.100 Sum_probs=111.3
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhh-hhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCC
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFV-EKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi-~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~ 113 (428)
...+...+..+.+...+.-..|...|..+..+....+.+ .. .+...+.+.+.+.++.-+.-...++.-++-.-
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~---~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--- 191 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDS---NLLSKLKSLMSQSSDIVRCRVYELLVEIASHS--- 191 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCc---chHHHHHHHHhccCHHHHHHHHHHHHHHHhcC---
Confidence 456788889999998888888888887776654333222 21 12445555555555444443334333332221
Q ss_pred CchHHHHHh--hhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHH--HHHHHHHHHhccCCCCccccCCCCHHH
Q 014240 114 ENSREILEE--SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE--RTMQIMWQIVHPKLGSNVVATRPSAPI 189 (428)
Q Consensus 114 ~~~eei~~~--~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~--~~m~~l~~i~~~~~g~~~~a~~~~~~l 189 (428)
++..++... +++.+..-+.+ .|.-.+.+|+..|+-++- .-.+..=+. ..++-+..++...... + ....-+
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~d-p---~~~~~~ 265 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEED-P---RLSSLL 265 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccC-C---cccchh
Confidence 122333332 45555454444 677778887777765554 111111011 1222233333221111 1 123345
Q ss_pred HHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 190 ITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 190 ~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
+...+..++-+++. .+..+. ......+..|.+++++.|..++.+|=+++|.|-
T Consensus 266 l~g~~~f~g~la~~-~~~~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 266 LPGRMKFFGNLARV-SPQEVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred hhhHHHHHHHHHhc-ChHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 56777888888877 554443 334555667778889999999999999999984
No 23
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.42 E-value=15 Score=43.01 Aligned_cols=177 Identities=16% Similarity=0.158 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHh---eeecCCCCc-hHHHHHhhhHHHH
Q 014240 53 REKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLL---ALTVGYGEN-SREILEESVAPIS 128 (428)
Q Consensus 53 R~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll---~l~lg~~~~-~eei~~~~~~~L~ 128 (428)
|..+|..|++.+. ....+|+. ..|-+.++.. |--+..=+.-|..++--+ ...+..|.+ .+++.+++++.|.
T Consensus 717 rl~~L~~L~~~~~-~e~~~~i~---k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Is 791 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLS-AEHCDLIP---KLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIIS 791 (1176)
T ss_pred HHHHHHHHHHhcc-HHHHHHHH---HHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 6677776666555 33345554 3334444443 433322222222222222 222333322 3556666655554
Q ss_pred HHhhcCCChHHHHHH-HHHHHHHHHH--cCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCC
Q 014240 129 QALKSGFDSSKIASL-LECLAVITFV--GGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMD 205 (428)
Q Consensus 129 ~~l~d~s~~~~r~~~-~~aLai~~fv--~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~ 205 (428)
.-+. .++....++ |.|++.+.|= ..-|.+-+...++.+-..+.+ .++.++.||+..-.-+.+-+|
T Consensus 792 agl~--gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s----------~sreI~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 792 AGLV--GDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS----------NSREIAKAAIGFIKVLVYKFP 859 (1176)
T ss_pred hhhc--ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHHcCC
Confidence 4311 122222222 5555544432 333444455555655555533 568999999999999999988
Q ss_pred CCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 206 GCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
...+. ...++.||.+-.+++.-...+|++.+--+=.+.+..
T Consensus 860 e~~l~-~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 860 EECLS-PHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHh-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 87665 456777888888777778999999886666665543
No 24
>PRK09687 putative lyase; Provisional
Probab=91.38 E-value=12 Score=37.12 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=45.6
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHh
Q 014240 123 SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLT 202 (428)
Q Consensus 123 ~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT 202 (428)
..|.|...+.|. ++.+|..++.+||-+ +..++.-+ +.+...+. ..++.|..+|+.+-+-+
T Consensus 160 ai~~L~~~L~d~-~~~VR~~A~~aLg~~---~~~~~~~~----~~L~~~L~----------D~~~~VR~~A~~aLg~~-- 219 (280)
T PRK09687 160 AIPLLINLLKDP-NGDVRNWAAFALNSN---KYDNPDIR----EAFVAMLQ----------DKNEEIRIEAIIGLALR-- 219 (280)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHhcC---CCCCHHHH----HHHHHHhc----------CCChHHHHHHHHHHHcc--
Confidence 456666666643 346777777777755 22223222 22222221 14456777776665431
Q ss_pred cCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHH
Q 014240 203 TMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (428)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiA 241 (428)
.. ...+|.|...|++++ ||+.|-++++
T Consensus 220 -------~~---~~av~~Li~~L~~~~--~~~~a~~ALg 246 (280)
T PRK09687 220 -------KD---KRVLSVLIKELKKGT--VGDLIIEAAG 246 (280)
T ss_pred -------CC---hhHHHHHHHHHcCCc--hHHHHHHHHH
Confidence 11 255677777777665 4555545443
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=91.35 E-value=20 Score=41.30 Aligned_cols=228 Identities=15% Similarity=0.110 Sum_probs=141.4
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCC--HHHHHHHHHHHhHheeecCCCCch
Q 014240 39 DEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS--SREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 39 ~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~--~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
+-+-+.+.+|+.+||..++..|.+... +.|+-+..+...++..+..++.-.+ ..=...|+-.+-.+-..-+
T Consensus 438 kai~~qlr~ks~kt~~~cf~lL~eli~--~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~----- 510 (1233)
T KOG1824|consen 438 KAIQKQLREKSVKTRQGCFLLLTELIN--VLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHP----- 510 (1233)
T ss_pred HHHHHHHhhccccchhhHHHHHHHHHH--hCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCC-----
Confidence 334457889999999999988776654 3566677788889999999886444 2223334333333222233
Q ss_pred HHHHHhhhHHHHHHhhcC-CChHHHHHHHHHHHHHHH----H-------cCCChHHHHHHHHHHHHHhccCCCCccccCC
Q 014240 117 REILEESVAPISQALKSG-FDSSKIASLLECLAVITF----V-------GGNDPEETERTMQIMWQIVHPKLGSNVVATR 184 (428)
Q Consensus 117 eei~~~~~~~L~~~l~d~-s~~~~r~~~~~aLai~~f----v-------~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~ 184 (428)
-+.|.-..|.|..++.-. .++=-+.+ +.||.+|+= + +++-...+-....+....+..+ .
T Consensus 511 p~~fhp~~~~Ls~~v~~aV~d~fyKis-aEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~--------d 581 (1233)
T KOG1824|consen 511 PEVFHPHLSALSPPVVAAVGDPFYKIS-AEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKAT--------D 581 (1233)
T ss_pred hhhcccchhhhhhHHHHHhcCchHhhh-HHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcc--------c
Confidence 366776666666554422 33311121 345555543 3 1222345555556666655553 2
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcccccccccccCCCCCCh
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSR 264 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~d~~~ 264 (428)
.+-.|--+|+++.|.++..+.+.- ...+...+|.|.+-|..+ --|.+|-.|+-+|++..-. +
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~l--~~eL~~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~--i------------ 643 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDFL--GNELPRTLPILLERLGNE--ITRLTAVKALTLIAMSPLD--I------------ 643 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHhch--hHHHHHHHHHHHHHhccce--e------------
Confidence 445889999999999999887532 234567788888777654 4589999999999998642 1
Q ss_pred hhhhhhhchHHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHh
Q 014240 265 EEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLE 313 (428)
Q Consensus 265 ~~y~~~~~~~~~l~~~l~~La~d~s~K~~aKkDrk~qRs~FRdIl~~iE 313 (428)
.+..-+-+.+.+|+..- +|.-|..|..|-..+..+-
T Consensus 644 -------~l~~~l~~il~~l~~fl------rK~~r~lr~~~l~a~~~L~ 679 (1233)
T KOG1824|consen 644 -------DLSPVLTEILPELASFL------RKNQRALRLATLTALDKLV 679 (1233)
T ss_pred -------ehhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 01233555677777764 5555666766666666553
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.32 E-value=4.5 Score=46.60 Aligned_cols=148 Identities=17% Similarity=0.204 Sum_probs=87.6
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
-+...+..|.+....+|..|+..|-..- ....+..+.+.++-....=+..|+.+++-+.-...
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence 4567778888999999999987664321 13344556666654444444555555544321111
Q ss_pred HHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHH
Q 014240 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (428)
Q Consensus 117 eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~a 196 (428)
..+.|...+.+ .++.+|..++.+|+.+- ..+.. .+...+. .+++.|-.+|+.+
T Consensus 685 ------~~~~L~~~L~~-~d~~VR~~A~~aL~~~~---~~~~~-------~l~~~L~----------D~d~~VR~~Av~a 737 (897)
T PRK13800 685 ------PAPALRDHLGS-PDPVVRAAALDVLRALR---AGDAA-------LFAAALG----------DPDHRVRIEAVRA 737 (897)
T ss_pred ------chHHHHHHhcC-CCHHHHHHHHHHHHhhc---cCCHH-------HHHHHhc----------CCCHHHHHHHHHH
Confidence 12456566655 56688888888887642 22221 1222221 2566788888777
Q ss_pred HHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 197 W~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
-+-+ .. .+.|..+|..++..||.+|.++|+-+
T Consensus 738 L~~~----~~-----------~~~l~~~l~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 738 LVSV----DD-----------VESVAGAATDENREVRIAVAKGLATL 769 (897)
T ss_pred Hhcc----cC-----------cHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 5542 11 13456678888888888888888765
No 27
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=90.62 E-value=16 Score=36.73 Aligned_cols=122 Identities=22% Similarity=0.247 Sum_probs=71.2
Q ss_pred HHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC--CChHHHH-HHHHHHHHHhccCCCCccccCCCCHHHHHHH
Q 014240 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG--NDPEETE-RTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (428)
Q Consensus 117 eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~--~d~~~~~-~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AA 193 (428)
+.-+.++.+.+.+.++-+.. ..+.-++.+++++++-.| .+.+++. .....|..++.. ++ .++.+.+++
T Consensus 81 ~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d--~s------~~~~~R~~~ 151 (309)
T PF05004_consen 81 EDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTD--SS------ASPKARAAC 151 (309)
T ss_pred HHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhC--Cc------cchHHHHHH
Confidence 44466777778887777665 445667888999988833 4444544 444466666643 32 334565677
Q ss_pred HHHHHHhHhcCCCCccchhhHHhhHH--HHHhhhcCC----------ChHHHHHHHHHHHHHHHhc
Q 014240 194 VSAWSFLLTTMDGCSLDSKKWQQSIS--YFSTLLDKD----------DRSIRIAAGEALALILETG 247 (428)
Q Consensus 194 L~aW~lLlT~~~~~~~~~~~~~~~l~--~L~~lL~s~----------d~~VRiAAGEaiALl~E~~ 247 (428)
+.+.|++.-......-.....-+.+. .+...+.++ +..|..||=.+-+||.=..
T Consensus 152 ~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~ 217 (309)
T PF05004_consen 152 LEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTL 217 (309)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcC
Confidence 77766665544333211111113344 222333332 3579999999999998543
No 28
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.45 E-value=5.2 Score=31.33 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=57.9
Q ss_pred HHHHHHh-cccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchH
Q 014240 39 DEALDAL-YEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (428)
Q Consensus 39 ~~~id~l-~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~e 117 (428)
+..++.| .++....|..++..|.+. .-...+..+...++-....=+..|+.+++-+ |
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~------ 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL------------GDPEAIPALIELLKDEDPMVRRAAARALGRI----G------ 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC------------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc------------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C------
Confidence 4567777 788888999988765411 1124455566666544444456666766643 4
Q ss_pred HHHHhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 014240 118 EILEESVAPISQALKSGFDSSKIASLLECLA 148 (428)
Q Consensus 118 ei~~~~~~~L~~~l~d~s~~~~r~~~~~aLa 148 (428)
-++..|.|.+.+.+..+...|..|+.+||
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 14578889999998888888899999986
No 29
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.11 E-value=6.7 Score=40.96 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 189 IITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 189 l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
.-.+-|.|++.++..+|..-+. ..+...+|-|.+-|+.+|.+|+.++=+++..+.+-.
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~-~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLL-PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 5567799999999999976555 356778899999999999999999999999887654
No 30
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.91 E-value=2.9 Score=35.41 Aligned_cols=89 Identities=16% Similarity=0.256 Sum_probs=59.8
Q ss_pred hhHHHHHHhhc--CC-ChHHHHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHH
Q 014240 123 SVAPISQALKS--GF-DSSKIASLLECLAVITFVGGNDPEETE-RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWS 198 (428)
Q Consensus 123 ~~~~L~~~l~d--~s-~~~~r~~~~~aLai~~fv~~~d~~~~~-~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~ 198 (428)
+...+...+.| +. ....|..++.+++.+.-+++....... ..|.++...++. +.+...|+++|.
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~------------~~l~~~al~~W~ 79 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI------------PELREEALSCWN 79 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC------------hhhHHHHHHHHH
Confidence 33445566677 33 346678899999977777776665433 666777665533 378899999999
Q ss_pred HhHhcCCCCccchhhHHhhHHHHHhh
Q 014240 199 FLLTTMDGCSLDSKKWQQSISYFSTL 224 (428)
Q Consensus 199 lLlT~~~~~~~~~~~~~~~l~~L~~l 224 (428)
.++..++...+. .++...+..+...
T Consensus 80 ~fi~~L~~~~l~-~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 80 CFIKTLDEEDLG-PLLDQIFAILLPL 104 (107)
T ss_pred HHHHHCCHHHHH-HHHHHHHHHHHHh
Confidence 999999997665 3444444444443
No 31
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=89.86 E-value=0.59 Score=34.06 Aligned_cols=52 Identities=27% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHH
Q 014240 188 PIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (428)
Q Consensus 188 ~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiA 241 (428)
.+-.+|+.+-|-+....+. .. .....+.+|.|..+|..++..||.+|..+|+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~-~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPE-LL-QPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHH-HH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhcccHH-HH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4555666655553322222 22 2466788999999998888899999998886
No 32
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.81 E-value=13 Score=40.16 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=100.8
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhh--hhhhhhhhHhHHHHHHHhhhcCCC----HHHHHHHHHHHhHheeecC
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGS----SREIALASHAIGLLALTVG 111 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~--~~~fi~~~~~TL~~~~~~sikkg~----~~E~~lA~~~l~Ll~l~lg 111 (428)
+...+..+.--....+..+...++++++... .-+.+.. .-+++.+..+++++. .-|.++|+.=| | .|
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~--~G~v~~lV~~l~~~~~~~lq~eAAWaLTnI---A--sg 140 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQ--SGVVPRLVEFLSRDDNPTLQFEAAWALTNI---A--SG 140 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHH--cCcHHHHHHHHccCCChhHHHHHHHHHHHH---h--cC
Confidence 4455555544334447888888888887443 2233332 367777777887665 44444444333 3 23
Q ss_pred CCCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHH--------H-HcCCChHHHHHH----------HHHHHHH
Q 014240 112 YGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVIT--------F-VGGNDPEETERT----------MQIMWQI 171 (428)
Q Consensus 112 ~~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~--------f-v~~~d~~~~~~~----------m~~l~~i 171 (428)
..+...-+-+ ...|.|.+++.++++ ..+-.|++|||=++ + +.+.-...+... -...|.+
T Consensus 141 tse~T~~vv~agavp~fi~Ll~s~~~-~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 141 TSEQTKVVVDAGAVPIFIQLLSSPSA-DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTL 219 (514)
T ss_pred chhhccccccCCchHHHHHHhcCCcH-HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHH
Confidence 3222222222 366777666655543 34455667766322 1 111111111111 1235655
Q ss_pred hccCCCCccccCCCCHHHHHHHHH-----------------HHHHh-HhcCCCCccchhhHHhhHHHHHhhhcCCChHHH
Q 014240 172 VHPKLGSNVVATRPSAPIITAMVS-----------------AWSFL-LTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIR 233 (428)
Q Consensus 172 ~~~~~g~~~~a~~~~~~l~~AAL~-----------------aW~lL-lT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VR 233 (428)
..---|.+| .+....+..+|. +|++- ||.-++..+..-+--..+|+|+.+|.++...|+
T Consensus 220 sNlcrgk~P---~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~ 296 (514)
T KOG0166|consen 220 SNLCRGKNP---SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVV 296 (514)
T ss_pred HHHHcCCCC---CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccc
Confidence 433124332 122234444444 45554 343444333321223558999999999999999
Q ss_pred HHHHHHHHHH
Q 014240 234 IAAGEALALI 243 (428)
Q Consensus 234 iAAGEaiALl 243 (428)
.+|=.+|+=|
T Consensus 297 ~PaLRaiGNI 306 (514)
T KOG0166|consen 297 TPALRAIGNI 306 (514)
T ss_pred cHHHhhccce
Confidence 9988887653
No 33
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.06 E-value=32 Score=38.69 Aligned_cols=179 Identities=17% Similarity=0.210 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHHHHhhh--hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHhe----------eecC------
Q 014240 50 GSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLA----------LTVG------ 111 (428)
Q Consensus 50 ~stR~~aL~~l~~al~~~~--~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~----------l~lg------ 111 (428)
.+.|.+||.-++++++-.| +..|++. -|+..-+...|.. .+| .|.+++..-+ +..|
T Consensus 231 ~~i~~aa~~ClvkIm~LyY~~m~~yM~~---alfaitl~amks~-~de--ValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 231 EEIQVAAFQCLVKIMSLYYEFMEPYMEQ---ALFAITLAAMKSD-NDE--VALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCC-cHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4568999999999877554 3344442 2555555666522 222 2333333332 1111
Q ss_pred CCCc----hHHHHHhhhHHHHHHhhc-CC----Ch-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccc
Q 014240 112 YGEN----SREILEESVAPISQALKS-GF----DS-SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVV 181 (428)
Q Consensus 112 ~~~~----~eei~~~~~~~L~~~l~d-~s----~~-~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~ 181 (428)
..+. +..-...+.|+|..+++- .. |. +.-.++..||.+.+-.++++. +...|.|+.+-|.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I--v~~Vl~Fiee~i~~------- 375 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI--VPHVLPFIEENIQN------- 375 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc--hhhhHHHHHHhcCC-------
Confidence 1011 112223688888888773 22 12 444566789999998888765 34777777766643
Q ss_pred cCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 182 ATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 182 a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
|+..=.-||.-|+|..+---+...+. .+..+++|.+..++.-+.+-||=+|.-++.=|++..
T Consensus 376 ---pdwr~reaavmAFGSIl~gp~~~~Lt-~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 376 ---PDWRNREAAVMAFGSILEGPEPDKLT-PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred ---cchhhhhHHHHHHHhhhcCCchhhhh-HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 55666677888888887655555554 456778888888888667888888888887777653
No 34
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=88.99 E-value=17 Score=40.80 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=96.9
Q ss_pred HhHHHHHHHhhhcCCCHHHHHHHHHHHhHhe-eecCCCCchHHHHH--hhhHHHHHHhhcCCCh-HHHHHHHHHHHHHHH
Q 014240 77 FATLLHQCLSSIKRGSSREIALASHAIGLLA-LTVGYGENSREILE--ESVAPISQALKSGFDS-SKIASLLECLAVITF 152 (428)
Q Consensus 77 ~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~-l~lg~~~~~eei~~--~~~~~L~~~l~d~s~~-~~r~~~~~aLai~~f 152 (428)
+...+.-+.+.++.++++ .+...++|.|+ +++.+ .+-..+.+ .+.|.|...+..+... .....++..+|.++
T Consensus 488 f~~~i~~L~~~v~~~~~e--e~~vE~LGiLaNL~~~~-ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla- 563 (708)
T PF05804_consen 488 FVDFIGDLAKIVSSGDSE--EFVVECLGILANLTIPD-LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA- 563 (708)
T ss_pred HHHHHHHHHHHhhcCCcH--HHHHHHHHHHHhcccCC-cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-
Confidence 344555566667777644 35667777766 55543 35667776 5999999999877543 44444444444222
Q ss_pred HcCCChHHHH-----HHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhH--HhhHHHHHhhh
Q 014240 153 VGGNDPEETE-----RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW--QQSISYFSTLL 225 (428)
Q Consensus 153 v~~~d~~~~~-----~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~--~~~l~~L~~lL 225 (428)
. |++-.. .++..+.+++..+ ..+..++.-.+-+|.=++..=+... .++ .+...+|.+++
T Consensus 564 --~-d~~~A~lL~~sgli~~Li~LL~~k--------qeDdE~VlQil~~f~~ll~h~~tr~---~ll~~~~~~~ylidL~ 629 (708)
T PF05804_consen 564 --S-DPECAPLLAKSGLIPTLIELLNAK--------QEDDEIVLQILYVFYQLLFHEETRE---VLLKETEIPAYLIDLM 629 (708)
T ss_pred --C-CHHHHHHHHhCChHHHHHHHHHhh--------CchHHHHHHHHHHHHHHHcChHHHH---HHHhccchHHHHHHHh
Confidence 2 332211 2344555666553 3455777888888777776632221 121 35678899999
Q ss_pred cCCChHHHHHHHHHHHHHHHhc
Q 014240 226 DKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 226 ~s~d~~VRiAAGEaiALl~E~~ 247 (428)
...+..||..|-.++-++-|..
T Consensus 630 ~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 630 HDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred cCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.73 E-value=13 Score=41.23 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=102.6
Q ss_pred hhHHHHHHHhcccchHHHHH---HHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCC
Q 014240 36 TLLDEALDALYEKRGSTREK---ALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGY 112 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~---aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~ 112 (428)
+.|.+....|+.-...+-+. ||..|++--.+.+..++..+-..-+++.+++..|..+++=+..|..++--+.+--.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~- 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT- 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-
Confidence 34555555555444444444 45555544456666677766668889999999999988888888887776655332
Q ss_pred CCchHHHHHhhhHHHHHHhh--cCCChHHHHHHHHHHHHHHHHcCCChHHHHH----HHHHHHHHhccCCCCccccCCCC
Q 014240 113 GENSREILEESVAPISQALK--SGFDSSKIASLLECLAVITFVGGNDPEETER----TMQIMWQIVHPKLGSNVVATRPS 186 (428)
Q Consensus 113 ~~~~eei~~~~~~~L~~~l~--d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~----~m~~l~~i~~~~~g~~~~a~~~~ 186 (428)
..+|-.+-.+|..+.. ...++.+|...|.||.++.=+ -++.+.. .++++...+. ..+
T Consensus 207 ----qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev---r~dkl~phl~~IveyML~~tq----------d~d 269 (885)
T KOG2023|consen 207 ----QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV---RPDKLVPHLDNIVEYMLQRTQ----------DVD 269 (885)
T ss_pred ----HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh---cHHhcccchHHHHHHHHHHcc----------Ccc
Confidence 4677666666655444 334568899999888655433 4554443 3444443322 133
Q ss_pred HHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhh
Q 014240 187 APIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLL 225 (428)
Q Consensus 187 ~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL 225 (428)
..| ||.|.-|.++..+.. +-.+.+..++++|+..|
T Consensus 270 E~V---ALEACEFwla~aeqp-i~~~~L~p~l~kliPvL 304 (885)
T KOG2023|consen 270 ENV---ALEACEFWLALAEQP-ICKEVLQPYLDKLIPVL 304 (885)
T ss_pred hhH---HHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHH
Confidence 344 566666666666555 43456677777776654
No 36
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.46 E-value=0.67 Score=33.78 Aligned_cols=50 Identities=26% Similarity=0.142 Sum_probs=36.2
Q ss_pred HHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 014240 96 IALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLA 148 (428)
Q Consensus 96 ~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLa 148 (428)
+.-|+.+++-++-..+ +........+.|.|...++|.++ .+|.+++.|||
T Consensus 4 R~~A~~aLg~l~~~~~--~~~~~~~~~~~~~L~~~L~d~~~-~VR~~A~~aLg 53 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCP--ELLQPYLPELLPALIPLLQDDDD-SVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHCTTTTTH--HHHHHHHHHHHHHHHHHTTSSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHhhHhcccH--HHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHh
Confidence 4456667766443333 34567778899999999988655 78999999997
No 37
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=87.50 E-value=34 Score=39.52 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=116.2
Q ss_pred hhhhHHHHHHHhcccchHH--HHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCC--C-HHHHHHHHHHHhHh--
Q 014240 34 KDTLLDEALDALYEKRGST--REKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG--S-SREIALASHAIGLL-- 106 (428)
Q Consensus 34 ~~~~l~~~id~l~eKr~st--R~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg--~-~~E~~lA~~~l~Ll-- 106 (428)
+...+-.+|-.|.+|+++. +..+|.-+..++..+..+.| .....-|..-+..++-.. + ..|+.+-+.=+.=.
T Consensus 474 ~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~f-hp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir 552 (1233)
T KOG1824|consen 474 IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVF-HPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR 552 (1233)
T ss_pred ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhc-ccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc
Confidence 3456777888999998765 99999999999998876554 233333444444444221 2 44543332222211
Q ss_pred eeecCCCCchHHHHHhhhHH-HHHHhhcCCChHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHhccCCCCccccCC
Q 014240 107 ALTVGYGENSREILEESVAP-ISQALKSGFDSSKIASLLECLAV-ITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATR 184 (428)
Q Consensus 107 ~l~lg~~~~~eei~~~~~~~-L~~~l~d~s~~~~r~~~~~aLai-~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~ 184 (428)
-+|-|.+-++...+..+... |++.-...++..+|-.+|.|.|. ++-+|.....++..++..|.+-+..
T Consensus 553 pl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n---------- 622 (1233)
T KOG1824|consen 553 PLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN---------- 622 (1233)
T ss_pred ccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc----------
Confidence 13333322333344444433 33333345667888999999993 4455555566777888877764422
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
..-.-+|+.|.+++++..-.-.. ...+.+.+|.|...|....+..|.+---++--|
T Consensus 623 --EiTRl~AvkAlt~Ia~S~l~i~l-~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L 678 (1233)
T KOG1824|consen 623 --EITRLTAVKALTLIAMSPLDIDL-SPVLTEILPELASFLRKNQRALRLATLTALDKL 678 (1233)
T ss_pred --hhHHHHHHHHHHHHHhccceeeh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445778888888765333222 355677788888888877777777644443333
No 38
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=87.17 E-value=26 Score=38.18 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=70.4
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHh
Q 014240 123 SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLT 202 (428)
Q Consensus 123 ~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT 202 (428)
+.|.|...+.+++. .-..|+..|+..+|+.--+.-. +.+|.-|+.... + .-+..+.=.+......+..
T Consensus 334 ~ip~Lld~l~dp~~--~~~e~~~~L~~ttFV~~V~~ps----LalmvpiL~R~l--~----eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 334 IIPTLLDALADPSC--YTPECLDSLGATTFVAEVDAPS----LALMVPILKRGL--A----ERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred HHHHHHHHhcCccc--chHHHHHhhcceeeeeeecchh----HHHHHHHHHHHH--h----hccchhhhhHHHHHHHHHH
Confidence 44444444444431 2345778888888887665533 333333333211 0 1122333455556667777
Q ss_pred cCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 203 TMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
.+++......++.+.+|.|..-+.-..++||--|..+++.+.|-..
T Consensus 402 LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred hhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 7744433346778888888888888899999999999999998654
No 39
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=87.03 E-value=5.4 Score=33.95 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=54.8
Q ss_pred hHHHHHHhhcCC---ChHHHHHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHH
Q 014240 124 VAPISQALKSGF---DSSKIASLLECLAVITFVGGNDPEET-ERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSF 199 (428)
Q Consensus 124 ~~~L~~~l~d~s---~~~~r~~~~~aLai~~fv~~~d~~~~-~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~l 199 (428)
...+...+.|.. ....|..++.+++.+-=+++...... -..|.++..-++ .+.+...|+++|..
T Consensus 13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~------------~~eL~~~al~~W~~ 80 (107)
T smart00802 13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE------------IPELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------chhHHHHHHHHHHH
Confidence 344555666655 33567888999987666666444332 256666665442 34699999999999
Q ss_pred hHhcCCCCccchhhHHhhHHH
Q 014240 200 LLTTMDGCSLDSKKWQQSISY 220 (428)
Q Consensus 200 LlT~~~~~~~~~~~~~~~l~~ 220 (428)
++..++..++. .+++..+..
T Consensus 81 ~i~~L~~~~l~-~ll~~~~~~ 100 (107)
T smart00802 81 LIKTLKEEELG-PLLDQIFAA 100 (107)
T ss_pred HHHhCCHHHHH-HHHHHHHHH
Confidence 99999986654 334443333
No 40
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.23 E-value=12 Score=37.11 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=72.8
Q ss_pred hHHHHHHH-hhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHH-HHHHHcC
Q 014240 78 ATLLHQCL-SSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLA-VITFVGG 155 (428)
Q Consensus 78 ~TL~~~~~-~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLa-i~~fv~~ 155 (428)
.++++.++ .+++.....=+.+|.+++||.|+--. ++-.+..+.+.+.++.+ +...+..|+.++. ++.-+|-
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~------~~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK------ELAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh------HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCc
Confidence 37776665 67766666447899999999999554 67777888888888544 6677777777765 3333332
Q ss_pred CCh---------HHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHh
Q 014240 156 NDP---------EETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLT 202 (428)
Q Consensus 156 ~d~---------~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT 202 (428)
.-. ......++++..++.+ .++.+.++|..|++=|+-
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~----------~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDS----------ENPELQAIAVEGLCKLLL 143 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHh
Confidence 211 1234556666666654 356799999999987653
No 41
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.99 E-value=40 Score=39.60 Aligned_cols=189 Identities=20% Similarity=0.232 Sum_probs=102.9
Q ss_pred HHHhcccc--hHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHH
Q 014240 42 LDALYEKR--GSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREI 119 (428)
Q Consensus 42 id~l~eKr--~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei 119 (428)
++...+++ ..++..+.+-|..++.....-.|+..+..++...+..++..-+ +...+.++-+|-.|--+.+ .+.
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~--~~~~~~rl~~L~~L~~~~~---~e~ 732 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS--SPAQASRLKCLKRLLKLLS---AEH 732 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHhcc---HHH
Confidence 55555554 3447778877777777756667777778888887777775443 3333334444433322221 133
Q ss_pred HHhhhHHHHHHhhcCC--ChHHHH---HHHHHHHHHHHH--cCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHH
Q 014240 120 LEESVAPISQALKSGF--DSSKIA---SLLECLAVITFV--GGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (428)
Q Consensus 120 ~~~~~~~L~~~l~d~s--~~~~r~---~~~~aLai~~fv--~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~A 192 (428)
++-+...+..+|-... +...|. +|+..++-+..+ -++++ ....++.+..+++. |. ..+++-++++
T Consensus 733 ~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isa--gl----~gd~~~~~as 804 (1176)
T KOG1248|consen 733 CDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISA--GL----VGDSTRVVAS 804 (1176)
T ss_pred HHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHh--hh----cccHHHHHHH
Confidence 3322223333332222 223333 334444421111 23333 35566666666654 21 1244445555
Q ss_pred HHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 193 AL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
-|-|.+-++---.. .+..+.+...+.-+...|.+..++|+.||=-.|..+.
T Consensus 805 ~Ivai~~il~e~~~-~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv 855 (1176)
T KOG1248|consen 805 DIVAITHILQEFKN-ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLV 855 (1176)
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 47777776644332 2333455666777778899999999999988777664
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=85.31 E-value=9.4 Score=31.09 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=48.4
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 014240 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFV 153 (428)
Q Consensus 80 L~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv 153 (428)
++..+...++.+...-+.-|+.+++-++.... +....+.+ ...|.|...+.+. ++..+..++.+|+-++..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNN--DNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAG 79 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccC
Confidence 44556666777776666777788887776543 22456666 7899999988874 566677777777766543
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=85.17 E-value=74 Score=36.15 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=38.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHH
Q 014240 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVI 150 (428)
Q Consensus 81 ~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~ 150 (428)
+..+.+-++...+-=+.+|+|.++-+ .. .++.+.+.+++++.+.|.+ +-+|..|+.|++=+
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~I--r~------~~i~e~l~~~lkk~L~D~~-pYVRKtAalai~Kl 167 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCI--RV------SSVLEYTLEPLRRAVADPD-PYVRKTAAMGLGKL 167 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcC--Cc------HHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 34444444434444467888866643 22 4788899999999998744 66666666555543
No 44
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=84.81 E-value=42 Score=32.94 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=63.7
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCC--CHHHHHHHHHHHhHheeecCCCCc
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG--SSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg--~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
+.-+...|..+..+.|+.||..+...=...--..-+ .+-+..+.+-+..+ ....|..+++++.-++++-.
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I----k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~---- 127 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI----KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND---- 127 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc----
Confidence 444566677888899999998776431111111112 22333333333233 36778899999999987754
Q ss_pred hHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC
Q 014240 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG 155 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~ 155 (428)
.+.++....|.|.+++..++...+ . .+|-++.-+++
T Consensus 128 ~~~~l~~~i~~ll~LL~~G~~~~k-~---~vLk~L~nLS~ 163 (254)
T PF04826_consen 128 YHHMLANYIPDLLSLLSSGSEKTK-V---QVLKVLVNLSE 163 (254)
T ss_pred hhhhHHhhHHHHHHHHHcCChHHH-H---HHHHHHHHhcc
Confidence 356777788888888887765432 2 34444444444
No 45
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=80.36 E-value=27 Score=41.23 Aligned_cols=113 Identities=16% Similarity=0.217 Sum_probs=72.4
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhc
Q 014240 124 VAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTT 203 (428)
Q Consensus 124 ~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~ 203 (428)
.++|..-|+.--...-|.+++.=|..+.-+-+ |+.-+...+-++...+. ++.+.|.++||..-+=+|+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~-de~~LDRVlPY~v~l~~----------Ds~a~Vra~Al~Tlt~~L~~ 492 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID-DEVKLDRVLPYFVHLLM----------DSEADVRATALETLTELLAL 492 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc-hHHHHhhhHHHHHHHhc----------CchHHHHHHHHHHHHHHHhh
Confidence 33444433333333344555555555555444 33344455555555443 36679999999999999998
Q ss_pred CCCCcc-chhhHHhh-HHHHHhhhcC-CChHHHHHHHHHHHHHHHhc
Q 014240 204 MDGCSL-DSKKWQQS-ISYFSTLLDK-DDRSIRIAAGEALALILETG 247 (428)
Q Consensus 204 ~~~~~~-~~~~~~~~-l~~L~~lL~s-~d~~VRiAAGEaiALl~E~~ 247 (428)
+-+-.. +..+..++ +|.|..|+.. +..-||+|=+.+||.+-+.+
T Consensus 493 Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA 539 (1431)
T KOG1240|consen 493 VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA 539 (1431)
T ss_pred ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH
Confidence 866432 22344444 6899999876 77899999999999997654
No 46
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=79.62 E-value=42 Score=36.68 Aligned_cols=187 Identities=16% Similarity=0.046 Sum_probs=95.0
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcC---CCHHHHHHHHHHHhHheeecCCC
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKR---GSSREIALASHAIGLLALTVGYG 113 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikk---g~~~E~~lA~~~l~Ll~l~lg~~ 113 (428)
.+.....+++.-..+.|..|=..+-..........+-+ .-+++.+.+.++- +...| .+.-+...++-.+|..
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~---~~~l~~l~~ai~dk~~~~~re--~~~~a~~~~~~~Lg~~ 209 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE---FGFLDNLSKAIIDKKSALNRE--AALLAFEAAQGNLGPP 209 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh---hhHHHHHHHHhcccchhhcHH--HHHHHHHHHHHhcCCC
Confidence 34444445553334445555555544444433333333 3344555555532 22344 5556666667778853
Q ss_pred CchHHHHHhhhHHHHHHhhcCCC--hHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHH
Q 014240 114 ENSREILEESVAPISQALKSGFD--SSKIASLLECLAVIT-FVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPII 190 (428)
Q Consensus 114 ~~~eei~~~~~~~L~~~l~d~s~--~~~r~~~~~aLai~~-fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~ 190 (428)
.|-| +.|.|-.+++..++ ..+|.++..|.-.+. -+.......+... .+-.+... ...-.
T Consensus 210 ---~EPy--iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llps--ll~~l~~~-----------kWrtK 271 (569)
T KOG1242|consen 210 ---FEPY--IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPS--LLGSLLEA-----------KWRTK 271 (569)
T ss_pred ---CCch--HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhh--hHHHHHHH-----------hhhhH
Confidence 2223 44444445554433 244544443332221 1122222221110 01111111 11223
Q ss_pred HHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 191 TAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 191 ~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
.++++.-+.+.-..|.. + +..+.+.+|.+++-|-.++++||-|+.++|-=+-+...
T Consensus 272 ~aslellg~m~~~ap~q-L-s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 272 MASLELLGAMADCAPKQ-L-SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred HHHHHHHHHHHHhchHH-H-HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence 56777777655444332 2 24567889999999999999999999999988777654
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=79.42 E-value=10 Score=31.62 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=33.2
Q ss_pred heeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 014240 106 LALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGN 156 (428)
Q Consensus 106 l~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~ 156 (428)
+++-+| ......++.+.||+...+. ..++.+|-.+|.||.-++-++..
T Consensus 13 ~ai~l~--~~~~~~l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~ 60 (97)
T PF12755_consen 13 VAIALG--KDISKYLDEILPPVLKCFD-DQDSRVRYYACEALYNISKVARG 60 (97)
T ss_pred HHHHch--HhHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 334444 3467778888887764433 34567799999999988888753
No 48
>PTZ00429 beta-adaptin; Provisional
Probab=79.33 E-value=1.2e+02 Score=34.58 Aligned_cols=182 Identities=12% Similarity=0.097 Sum_probs=95.0
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
..+.....+|.+++.-.|-.|.-.+.+++.... +.+.. ..+++.+...+.-.+. ...+..+..|.-+.--.+
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~--~~~~~~L~~LL~D~dp--~Vv~nAl~aL~eI~~~~~-- 211 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQ--QDFKKDLVELLNDNNP--VVASNAAAIVCEVNDYGS-- 211 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccc--cchHHHHHHHhcCCCc--cHHHHHHHHHHHHHHhCc--
Confidence 344445556788888888888888877765332 22211 1122233333432222 222222222333321111
Q ss_pred hHHHHHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHH
Q 014240 116 SREILEESVAPISQALKSGF--DSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d~s--~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AA 193 (428)
..++-..+.+.+++..-. +.=..+.++..| +.+.-.+.++....|+.+...+.+ .+++|+-+|
T Consensus 212 --~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~il~~l~~~Lq~----------~N~AVVl~A 276 (746)
T PTZ00429 212 --EKIESSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESAETLLTRVLPRMSH----------QNPAVVMGA 276 (746)
T ss_pred --hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHHhcC----------CCHHHHHHH
Confidence 123445555555554322 222223334444 445545556666777766665544 346788888
Q ss_pred HHHHHHhHhcCCCCccchhhHHhhH----HHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 194 VSAWSFLLTTMDGCSLDSKKWQQSI----SYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 194 L~aW~lLlT~~~~~~~~~~~~~~~l----~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
+....-+.+.+++ +..+..+ +.|..| .+.+.++|..+=.+|-+|...
T Consensus 277 ik~il~l~~~~~~-----~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 277 IKVVANLASRCSQ-----ELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HHHHHHhcCcCCH-----HHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHH
Confidence 8877666554422 2223333 445555 467889999999999888654
No 49
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=77.44 E-value=1e+02 Score=32.52 Aligned_cols=47 Identities=30% Similarity=0.187 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
.++.|.++|+.+-+.|=. ...+|.|...+.+.|.+||.+|-++++++
T Consensus 159 ~d~~Vra~A~raLG~l~~------------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 159 EDALVRAAALRALGELPR------------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred CCHHHHHHHHHHHHhhcc------------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 677888998888776431 14567788889999999999999999776
No 50
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=76.63 E-value=41 Score=37.59 Aligned_cols=144 Identities=10% Similarity=0.097 Sum_probs=99.6
Q ss_pred HHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHH
Q 014240 64 FNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASL 143 (428)
Q Consensus 64 l~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~ 143 (428)
+..+.-.+++ .+++++.+.+|++--+..=|..+++.++.++=+++. .-+-+.++|-|+.+..-.+...++..|
T Consensus 377 L~~Kt~~e~~---~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~----~~vk~~ilP~l~~l~~~tt~~~vkvn~ 449 (700)
T KOG2137|consen 377 LKEKTPPEEV---KEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV----PFVKQAILPRLKNLAFKTTNLYVKVNV 449 (700)
T ss_pred HHhhCChHHH---HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH----HHHHHHHHHHhhcchhcccchHHHHHH
Confidence 4445544444 467777778888655555677888888888877763 367778999999996667777899999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCC-ccchhhHHhhHHHHH
Q 014240 144 LECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGC-SLDSKKWQQSISYFS 222 (428)
Q Consensus 144 ~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~-~~~~~~~~~~l~~L~ 222 (428)
+.|++.+. +--|...+|+.+..+... . ...+|.++-.-+..+--|....+.+ ++. .+..+|.+.
T Consensus 450 L~c~~~l~-----q~lD~~~v~d~~lpi~~~-~------~~~dp~iv~~~~~i~~~l~~~~~~g~ev~---~~~VlPlli 514 (700)
T KOG2137|consen 450 LPCLAGLI-----QRLDKAAVLDELLPILKC-I------KTRDPAIVMGFLRIYEALALIIYSGVEVM---AENVLPLLI 514 (700)
T ss_pred HHHHHHHH-----HHHHHHHhHHHHHHHHHH-h------cCCCcHHHHHHHHHHHHHHhhcccceeee---hhhhhhhhh
Confidence 99999776 222334455554444432 1 1367888888899998888888875 333 357788887
Q ss_pred hhhcCCC
Q 014240 223 TLLDKDD 229 (428)
Q Consensus 223 ~lL~s~d 229 (428)
.+.-.+.
T Consensus 515 ~ls~~~~ 521 (700)
T KOG2137|consen 515 PLSVAPS 521 (700)
T ss_pred hhhhccc
Confidence 7765554
No 51
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=76.19 E-value=5.8 Score=25.58 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=21.3
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 014240 123 SVAPISQALKSGFDSSKIASLLECLAVIT 151 (428)
Q Consensus 123 ~~~~L~~~l~d~s~~~~r~~~~~aLai~~ 151 (428)
+.|.|.+.++|+ ++.+|.+++.||+-++
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 467888877765 5788899999998765
No 52
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=76.09 E-value=70 Score=35.50 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 188 PIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 188 ~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
.|++.-+.-.+.+.-. .+..+....|-..--.|.++|.|-+.++|-+|-++.+.|-+..
T Consensus 703 Kv~~nti~lvg~I~~~-~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 703 KVVANTIALVGTICMN-SPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred HHhhhHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 4554444333332221 2334555566555556888899999999999999999998875
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=73.48 E-value=33 Score=28.50 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhh
Q 014240 53 REKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALK 132 (428)
Q Consensus 53 R~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~ 132 (428)
|-.||-+|...-.. ++..+.....+|+.-+++|+.-...+=+..|+.++.-++-..++ +.-.-|.++++.|.+++.
T Consensus 3 R~ggli~Laa~ai~--l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIA--LGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHH--chHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHc
Confidence 55566555433222 22337777899999999999655566688999999988876663 344457888888888877
Q ss_pred cCCCh
Q 014240 133 SGFDS 137 (428)
Q Consensus 133 d~s~~ 137 (428)
|....
T Consensus 79 D~d~~ 83 (97)
T PF12755_consen 79 DPDEN 83 (97)
T ss_pred CCchh
Confidence 76544
No 54
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=72.39 E-value=45 Score=31.08 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
.++.+.+..|.+-+.|....|-.++...++...+..+..++.+.|.+||+++-=++..+.=
T Consensus 114 ~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 114 KSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred cccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 5567899999999999999999998888888888888899999999999999777776653
No 55
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=72.27 E-value=1.4e+02 Score=31.95 Aligned_cols=188 Identities=16% Similarity=0.183 Sum_probs=115.7
Q ss_pred hHHHHHHHhccc-chHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCC-CHHHHHHHHHHHhHheeecCCCC
Q 014240 37 LLDEALDALYEK-RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG-SSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 37 ~l~~~id~l~eK-r~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg-~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
...+.+..+..- +++.|..||..|..++...-.. .-+..+.+|+..++.-+.+- +..-..+|+|++.=.|-.-.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfs-vWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~--- 362 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFS-VWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP--- 362 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch---
Confidence 455556666543 7778999999998887632110 12446788888888888553 23346799999887764333
Q ss_pred chHHHHHhhhHHHHHHhhcCCCh---HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHH
Q 014240 115 NSREILEESVAPISQALKSGFDS---SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIIT 191 (428)
Q Consensus 115 ~~eei~~~~~~~L~~~l~d~s~~---~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~ 191 (428)
..+|+...-.+.+++.-.-++ ..+++.=.|+-+++-+ ++. .++..+--+|-. .+.+...
T Consensus 363 --~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~---~P~---~~I~~i~~~Ilt----------~D~~~~~ 424 (516)
T KOG2956|consen 363 --ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH---LPL---QCIVNISPLILT----------ADEPRAV 424 (516)
T ss_pred --HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh---Cch---hHHHHHhhHHhc----------CcchHHH
Confidence 467776666677776644333 3344443444443333 332 111112122211 2224555
Q ss_pred HHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 192 AMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 192 AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
++|..-.=|.-.++..++. .++.+.+|.+..--+|....||.+|==+|.-+|-..
T Consensus 425 ~~iKm~Tkl~e~l~~EeL~-~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 425 AVIKMLTKLFERLSAEELL-NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred HHHHHHHHHHhhcCHHHHH-HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 6777766666666666555 456777888888889999999999998888887643
No 56
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=70.87 E-value=1e+02 Score=29.59 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=59.4
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHhccCCCCccccCCCCHHHHHHHHHHHH
Q 014240 121 EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQI--MWQIVHPKLGSNVVATRPSAPIITAMVSAWS 198 (428)
Q Consensus 121 ~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~--l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~ 198 (428)
.++.+.|..+++...++..++.++.+|+.+| . . +.+++ .|.++.++.|. +.-+.+..+|..|.
T Consensus 120 ~~ll~~ls~~L~~~~~~~~~alale~l~~Lc---~---~---~vvd~~s~w~vl~~~l~~------~~rp~v~~~l~~l~ 184 (234)
T PF12530_consen 120 VDLLPLLSGCLNQSCDEVAQALALEALAPLC---E---A---EVVDFYSAWKVLQKKLSL------DYRPLVLKSLCSLF 184 (234)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHH---H---H---hhccHHHHHHHHHHhcCC------ccchHHHHHHHHHH
Confidence 3577778888764444566677777887776 2 1 23333 67777775533 33345555688888
Q ss_pred HhHhcCCCCccc-hhhHHhhHHHHHhhhcCCChHHHHHHHHHHH
Q 014240 199 FLLTTMDGCSLD-SKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (428)
Q Consensus 199 lLlT~~~~~~~~-~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiA 241 (428)
.|+....-.... ++.....+..+=+...+.+.++-..+-++..
T Consensus 185 ~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~ 228 (234)
T PF12530_consen 185 ALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRL 228 (234)
T ss_pred HHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 877655443321 1233444555556666666543333333333
No 57
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=69.29 E-value=69 Score=34.92 Aligned_cols=132 Identities=19% Similarity=0.184 Sum_probs=75.8
Q ss_pred hhHHHHHHHhccc----chHHHHHHHHHHHHHHHhhhhhh------------h-hhhhHhHHHHHHHhhhcCCCHHHHHH
Q 014240 36 TLLDEALDALYEK----RGSTREKALSSIIEAFNNTLQHQ------------F-VEKKFATLLHQCLSSIKRGSSREIAL 98 (428)
Q Consensus 36 ~~l~~~id~l~eK----r~stR~~aL~~l~~al~~~~~~~------------f-i~~~~~TL~~~~~~sikkg~~~E~~l 98 (428)
+.++.+.+.+..+ +...|..|+-++-.... ++... . +++-..-|...+..+..+++..+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~-~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVH-KYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHH-HHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhC-ceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 3566666666533 33447777766644333 23222 1 12223445555556666778889999
Q ss_pred HHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcC-CCh-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCC
Q 014240 99 ASHAIGLLALTVGYGENSREILEESVAPISQALKSG-FDS-SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL 176 (428)
Q Consensus 99 A~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~-s~~-~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~ 176 (428)
++++||-+.. ..+.|.|...+.+. ..+ ..|.+|+.||.-+ ....+ ....+.+|.|+...
T Consensus 510 ~LkaLgN~g~------------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~---~~~~~---~~v~~~l~~I~~n~- 570 (618)
T PF01347_consen 510 YLKALGNLGH------------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRL---AKHCP---EKVREILLPIFMNT- 570 (618)
T ss_dssp HHHHHHHHT-------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG---GGT-H---HHHHHHHHHHHH-T-
T ss_pred HHHHhhccCC------------chhhHHHHhHhhhccccchHHHHHHHHHHHHH---hhcCc---HHHHHHHHHHhcCC-
Confidence 9999997532 23777888888877 333 7788888888522 22223 34556678877652
Q ss_pred CCccccCCCCHHHHHHHH
Q 014240 177 GSNVVATRPSAPIITAMV 194 (428)
Q Consensus 177 g~~~~a~~~~~~l~~AAL 194 (428)
..++.|-.||+
T Consensus 571 -------~e~~EvRiaA~ 581 (618)
T PF01347_consen 571 -------TEDPEVRIAAY 581 (618)
T ss_dssp -------TS-HHHHHHHH
T ss_pred -------CCChhHHHHHH
Confidence 35567888886
No 58
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.73 E-value=1.4e+02 Score=33.54 Aligned_cols=116 Identities=12% Similarity=0.153 Sum_probs=60.7
Q ss_pred HHHHHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHH
Q 014240 117 REILEESVAPISQALKSGFDS-SKIASLLECLAVITFVGGNDPE-ETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMV 194 (428)
Q Consensus 117 eei~~~~~~~L~~~l~d~s~~-~~r~~~~~aLai~~fv~~~d~~-~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL 194 (428)
+++...++|.|+..+.. +. -.|-+.+.|||.++==|-.+.- -+-+..-++......|. | ..=.+
T Consensus 388 ~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk----------p--lVRsI 453 (885)
T KOG2023|consen 388 DELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK----------P--LVRSI 453 (885)
T ss_pred HHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc----------c--ceeee
Confidence 57778888888877665 32 5567777788776532222111 12234444554443321 1 11234
Q ss_pred HHHHHhHhcCCCCccc---hhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 195 SAWSFLLTTMDGCSLD---SKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 195 ~aW~lLlT~~~~~~~~---~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
.+|+|- ....|-+. .+.+...+.-|...|=..+..|+-||.-+.|.+-|-+.
T Consensus 454 TCWTLs--Rys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 454 TCWTLS--RYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred eeeeHh--hhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 566542 22222111 12233333333322234568899999999999987653
No 59
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.24 E-value=2.2e+02 Score=32.35 Aligned_cols=204 Identities=18% Similarity=0.153 Sum_probs=98.8
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhh--------hhhhhhhh----hHhHHHHHHHh-hhc--CCCHHHHHHHHHH
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNT--------LQHQFVEK----KFATLLHQCLS-SIK--RGSSREIALASHA 102 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~--------~~~~fi~~----~~~TL~~~~~~-sik--kg~~~E~~lA~~~ 102 (428)
.+=++-+|++|=.++|..||.=+..+-+.+ ++.+++.. .+..++..++. |-+ +-.-..-.|...+
T Consensus 338 kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsV 417 (877)
T KOG1059|consen 338 KDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSV 417 (877)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence 344677899999999999998776655432 23333211 12222222221 211 1112222344444
Q ss_pred HhHheeecCCCCchHHHHH----------h----hhHHHHHHhhcCC---ChHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 014240 103 IGLLALTVGYGENSREILE----------E----SVAPISQALKSGF---DSSKIASLLECLAVITFVGGNDPEETERTM 165 (428)
Q Consensus 103 l~Ll~l~lg~~~~~eei~~----------~----~~~~L~~~l~d~s---~~~~r~~~~~aLai~~fv~~~d~~~~~~~m 165 (428)
+.=|+---|. +-+..|-+ . +...+..++.|+. +...+...+.-|-.++.++|+-.+-++.--
T Consensus 418 lveLa~l~~~-~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~ 496 (877)
T KOG1059|consen 418 LVELARLEGT-RHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPN 496 (877)
T ss_pred HHHHHhcccc-chhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHH
Confidence 4333322221 11222222 1 2223444454441 112222234444444555554333333333
Q ss_pred HHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccc-h--hhHHhhHHHHHhhhcCCChHHHHHHHHHHHH
Q 014240 166 QIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLD-S--KKWQQSISYFSTLLDKDDRSIRIAAGEALAL 242 (428)
Q Consensus 166 ~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~-~--~~~~~~l~~L~~lL~s~d~~VRiAAGEaiAL 242 (428)
+.+...+.|+...-+. ...+..+-++..-++.+.+......-- . .+.+..+.+|..+..|.|++||--|-+++-|
T Consensus 497 ~~leamlrpr~~~lp~--~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~l 574 (877)
T KOG1059|consen 497 DTLEAMLRPRSDLLPG--HIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLEL 574 (877)
T ss_pred HHHHHHhcCccccCch--HHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHH
Confidence 3344444453211111 122356667778888888877664311 1 1224456777788889999999998887766
Q ss_pred HH
Q 014240 243 IL 244 (428)
Q Consensus 243 l~ 244 (428)
+-
T Consensus 575 i~ 576 (877)
T KOG1059|consen 575 IR 576 (877)
T ss_pred HH
Confidence 53
No 60
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=68.15 E-value=9.5 Score=25.97 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=24.5
Q ss_pred hhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 216 QSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 216 ~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
..+|.|..+|.+.|.+||..|.-+|.=|
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999998887644
No 61
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=67.64 E-value=1.7e+02 Score=33.45 Aligned_cols=188 Identities=8% Similarity=0.120 Sum_probs=112.1
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
.+.....++.+.+-.-.-|.-..+.+-+++..-...++=+.--+.|++.++-.+-.-+ .|-..-+..+++++-.+|.
T Consensus 715 ~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt-t~d~vml~gfg~V~~~lg~-- 791 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT-TEDSVMLLGFGTVVNALGG-- 791 (1172)
T ss_pred hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc-cchhhhhhhHHHHHHHHhh--
Confidence 3456667777777666667766666666666555556555555777888888774333 3333444666666666663
Q ss_pred chHHHHHhhhHHHHHHh----hc--CCChHHHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHhccCCCCccccCCCC
Q 014240 115 NSREILEESVAPISQAL----KS--GFDSSKIASLLECLAVITFV--GGNDPEETERTMQIMWQIVHPKLGSNVVATRPS 186 (428)
Q Consensus 115 ~~eei~~~~~~~L~~~l----~d--~s~~~~r~~~~~aLai~~fv--~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~ 186 (428)
...|+|.+++ .- ...+.+|+.++.-.|.++-| .|.+...+-.+=-.+.+.+ | ...
T Consensus 792 -------r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl----g------eey 854 (1172)
T KOG0213|consen 792 -------RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL----G------EEY 854 (1172)
T ss_pred -------ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc----C------ccc
Confidence 1233333322 21 22347788888888877766 3322222212212234433 3 266
Q ss_pred HHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 187 APIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 187 ~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
|.+.-.-|.|-..+...+.-.+... -+.+.+|.|..+|.+.+.-|+-. +|+|+.=+
T Consensus 855 pEvLgsILgAikaI~nvigm~km~p-Pi~dllPrltPILknrheKVqen---~IdLvg~I 910 (1172)
T KOG0213|consen 855 PEVLGSILGAIKAIVNVIGMTKMTP-PIKDLLPRLTPILKNRHEKVQEN---CIDLVGTI 910 (1172)
T ss_pred HHHHHHHHHHHHHHHHhccccccCC-ChhhhcccchHhhhhhHHHHHHH---HHHHHHHH
Confidence 7888888888888877765554442 34678999999999998888765 34444433
No 62
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=67.23 E-value=88 Score=35.51 Aligned_cols=123 Identities=12% Similarity=0.211 Sum_probs=80.8
Q ss_pred HHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcC-CChHHHHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHH
Q 014240 96 IALASHAIGLLALTVGYGENSREILEESVAPISQALKSG-FDSSKIASLLECLAVITFVGGN---DPEETERTMQIMWQI 171 (428)
Q Consensus 96 ~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~-s~~~~r~~~~~aLai~~fv~~~---d~~~~~~~m~~l~~i 171 (428)
+--..+++--+|+-+|. .++..+.|.+ .+|..+ .+.+.++..++|+++.+..-.. +.+.....++-+|.-
T Consensus 529 RhTgIkivqqIail~Gc-----svlphl~~lv-~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 529 RHTGIKIVQQIAILSGC-----SVLPHLKPLV-KIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred hchhhHHHHHHHHHhcc-----hhhhhhHHHH-HHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 45667777777777885 2444333333 233333 3444455566777777766444 455556777889987
Q ss_pred hccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHH
Q 014240 172 VHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIA 235 (428)
Q Consensus 172 ~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiA 235 (428)
+.. .-....+|-|.|-|+|...++....+ ..-.+.|-.+..=.+|+|-++...
T Consensus 603 ir~----------hrgk~laafLkAigyliplmd~eya~-yyTrevmlil~rEf~sPDeemkki 655 (1172)
T KOG0213|consen 603 IRQ----------HRGKELAAFLKAIGYLIPLMDAEYAS-YYTREVMLILIREFGSPDEEMKKI 655 (1172)
T ss_pred HHH----------ccChHHHHHHHHHhhccccccHHHHH-HhHHHHHHHHHHhhCCChHHHHHH
Confidence 765 22367899999999999998886544 445677777777788998776543
No 63
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=66.71 E-value=43 Score=29.80 Aligned_cols=69 Identities=9% Similarity=0.007 Sum_probs=45.3
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHH
Q 014240 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECL 147 (428)
Q Consensus 79 TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aL 147 (428)
..+.++.+-|+.+.+.++.+|+.++-.++-..|..-..+-.-+++...|.+++.....+.++..++..+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 344456666777889999999999999999888521112222356666777777656666655554443
No 64
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=66.54 E-value=1.5e+02 Score=29.86 Aligned_cols=187 Identities=16% Similarity=0.083 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhc
Q 014240 54 EKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKS 133 (428)
Q Consensus 54 ~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d 133 (428)
|.+|..+..+|.+++..- =.+--.++++.+.++++--+..=+..-+.+++-.+-+.+. .+...+...+.|.|..++..
T Consensus 37 E~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~ 114 (339)
T PF12074_consen 37 EAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN-SDSLKFAEPFLPKLLQSLKE 114 (339)
T ss_pred HHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHHHHHH
Confidence 778888888888776422 1223366777777777544433443333333333322222 23456666777877777764
Q ss_pred CCC-hHHH-----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCcc----ccCC-CCHHHHHHHHHHHHHhHh
Q 014240 134 GFD-SSKI-----ASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNV----VATR-PSAPIITAMVSAWSFLLT 202 (428)
Q Consensus 134 ~s~-~~~r-----~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~----~a~~-~~~~l~~AAL~aW~lLlT 202 (428)
... +... ..|+.++. + ++....+.+...-...|.++.....+.. .-.+ .++.-..-.+.+-.-+++
T Consensus 115 ~~~~p~~~~~~~~~~~a~~~l--~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~ 191 (339)
T PF12074_consen 115 ASANPLQSAQNGELVGAYVLL--A-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLS 191 (339)
T ss_pred HHhCCCCccccccHHHHHHHH--H-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHh
Confidence 432 2111 11222221 1 2221222222222233433321111110 0011 233333444444444555
Q ss_pred cCCCCccchhhHHhhHHHHHhhhcCC--ChHHHHHHHHHHHHHHHh
Q 014240 203 TMDGCSLDSKKWQQSISYFSTLLDKD--DRSIRIAAGEALALILET 246 (428)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~lL~s~--d~~VRiAAGEaiALl~E~ 246 (428)
..+....... ....-..+.-++-+. ...||..|.+++-=+|-.
T Consensus 192 ~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 192 DHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred cchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 5444333221 223345566666666 899999999888877654
No 65
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=65.69 E-value=1.9e+02 Score=32.93 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=33.1
Q ss_pred HHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 014240 96 IALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFV 153 (428)
Q Consensus 96 ~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv 153 (428)
+.+|.|.++++ +. .++...+.+++++.++++.+ -+|-.|+ +|+.-.+
T Consensus 109 R~~AlR~ls~l----~~----~el~~~~~~~ik~~l~d~~a-yVRk~Aa--lav~kly 155 (757)
T COG5096 109 RGFALRTLSLL----RV----KELLGNIIDPIKKLLTDPHA-YVRKTAA--LAVAKLY 155 (757)
T ss_pred HHHHHHHHHhc----Ch----HHHHHHHHHHHHHHccCCcH-HHHHHHH--HHHHHHH
Confidence 67888887773 32 48899999999999998876 4445554 4444444
No 66
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=65.48 E-value=1.1e+02 Score=35.17 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=79.5
Q ss_pred HHHHHhhhHHHHHHhh-cCCChHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHhccC--CC---------------
Q 014240 117 REILEESVAPISQALK-SGFDSSKIASLLECLAVITFV-GGNDPEETERTMQIMWQIVHPK--LG--------------- 177 (428)
Q Consensus 117 eei~~~~~~~L~~~l~-d~s~~~~r~~~~~aLai~~fv-~~~d~~~~~~~m~~l~~i~~~~--~g--------------- 177 (428)
+++..-+...|..+++ |+.-+..+.+-+..+.+..|. ..+||--+...-++|.+++... .|
T Consensus 544 ~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~ 623 (1005)
T KOG2274|consen 544 DEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQ 623 (1005)
T ss_pred HHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHc
Confidence 4555555666666666 443333344445566666666 3446543333334444443321 12
Q ss_pred CccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhh-hcCCChHHHHHHHHHHHHHHHhcc
Q 014240 178 SNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTL-LDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 178 ~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~l-L~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
.+. .+..+.+++.|+.--..++---|+. +...+...+.|.+..+ |.|+|-+.--.|||++.-+.+..+
T Consensus 624 ~~~--~~~~~~l~~~aidvLttvvr~tp~p-L~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 624 LNA--DKAPAGLCAIAIDVLTTVLRNTPSP-LPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred Ccc--cccCchhhHHHHHHHHHHHhcCCCC-ccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 221 1234678888888776666555554 5556778888988876 688899999999999999988764
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.92 E-value=2.6e+02 Score=31.74 Aligned_cols=187 Identities=18% Similarity=0.216 Sum_probs=98.0
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCC--
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG-- 113 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~-- 113 (428)
+.-.+.+-.|.--|.=+|-.|.--+++.|-+.+ +-+...+.-|.+ -+--.++.=+..|-.+||=|+=.-+-.
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP--eAlr~~FprL~E----kLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP--EALRPCFPRLVE----KLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh--HhHhhhHHHHHH----hccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 456677778888888889888877777766432 111111111111 111223444555555555554221110
Q ss_pred CchHHHH------------------------------HhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC--CChHHH
Q 014240 114 ENSREIL------------------------------EESVAPISQALKSGFDSSKIASLLECLAVITFVGG--NDPEET 161 (428)
Q Consensus 114 ~~~eei~------------------------------~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~--~d~~~~ 161 (428)
.=+..+| +-+.|+|..++.+.++-+.--.|+.|.-......| ++...+
T Consensus 218 ~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi 297 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI 297 (877)
T ss_pred cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH
Confidence 0001222 34555666666655555555555555433333322 122333
Q ss_pred HHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHH
Q 014240 162 ERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (428)
Q Consensus 162 ~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiA 241 (428)
.-+.+=+-.++.. .++.+-=-+|.|.+-++-+- +...+.+......+|+-.|..||+ ++|-
T Consensus 298 qLCvqKLr~fied----------sDqNLKYlgLlam~KI~ktH------p~~Vqa~kdlIlrcL~DkD~SIRl---rALd 358 (877)
T KOG1059|consen 298 QLCVQKLRIFIED----------SDQNLKYLGLLAMSKILKTH------PKAVQAHKDLILRCLDDKDESIRL---RALD 358 (877)
T ss_pred HHHHHHHhhhhhc----------CCccHHHHHHHHHHHHhhhC------HHHHHHhHHHHHHHhccCCchhHH---HHHH
Confidence 3344434444432 33445555555555555332 234567778888999999999999 5678
Q ss_pred HHHHhc
Q 014240 242 LILETG 247 (428)
Q Consensus 242 Ll~E~~ 247 (428)
|+|.+.
T Consensus 359 Ll~gmV 364 (877)
T KOG1059|consen 359 LLYGMV 364 (877)
T ss_pred HHHHHh
Confidence 888875
No 68
>PF05536 Neurochondrin: Neurochondrin
Probab=60.91 E-value=2.5e+02 Score=30.62 Aligned_cols=230 Identities=14% Similarity=0.166 Sum_probs=114.6
Q ss_pred hHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch--HHHHHhhhH-HHHHHhhcCCCh---HHHHHHHHHHHHHH
Q 014240 78 ATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS--REILEESVA-PISQALKSGFDS---SKIASLLECLAVIT 151 (428)
Q Consensus 78 ~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~--eei~~~~~~-~L~~~l~d~s~~---~~r~~~~~aLai~~ 151 (428)
..-++.|++.+|..+ .|+.+|.-++.-=.+.-++.... +.||+.+-| +|.|++..++.+ ......--|+++++
T Consensus 4 ~~~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 4 SASLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred hHHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 345677888887667 45444433332223332221111 358887655 578888876543 34555667888888
Q ss_pred HHcCCChH-----HHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhh
Q 014240 152 FVGGNDPE-----ETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLL 225 (428)
Q Consensus 152 fv~~~d~~-----~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL 225 (428)
-+|. +++ ++...+-.+.+++.... +..++.-|++.-..+.+.=.+. ..++ .+.+|.|.+.+
T Consensus 83 ~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s---------~~~~v~dalqcL~~Ias~~~G~---~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 83 AFCR-DPELASSPQMVSRIPLLLEILSSSS---------DLETVDDALQCLLAIASSPEGA---KALLESGAVPALCEII 149 (543)
T ss_pred HHcC-ChhhhcCHHHHHHHHHHHHHHHcCC---------chhHHHHHHHHHHHHHcCcHhH---HHHHhcCCHHHHHHHH
Confidence 8887 333 34444455777665421 1244444544444444221111 1222 35688888887
Q ss_pred cCCChHHHHHHHHHHHHHHHhcccccccccccCCCCCChhhhhhhhchHHHHHHHHHHHHhhhcCCCccchhhHHHHHHH
Q 014240 226 DKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLF 305 (428)
Q Consensus 226 ~s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~d~~~~~y~~~~~~~~~l~~~l~~La~d~s~K~~aKkDrk~qRs~F 305 (428)
.+.....=+|..=-+.++.-.... .+.+....+...+..|+.+- +...+.+|-+.-..+
T Consensus 150 ~~~~~~~E~Al~lL~~Lls~~~~~-------------------~~~~~~~~l~~il~~La~~f--s~~~~~~kfell~~L 208 (543)
T PF05536_consen 150 PNQSFQMEIALNLLLNLLSRLGQK-------------------SWAEDSQLLHSILPSLARDF--SSFHGEDKFELLEFL 208 (543)
T ss_pred HhCcchHHHHHHHHHHHHHhcchh-------------------hhhhhHHHHHHHHHHHHHHH--HhhccchHHHHHHHH
Confidence 774444444443334444332210 11122344555566677653 222233333332222
Q ss_pred HHHHHHHhcCCCCceeEEEcCeeEEEchhHHHHHHHHHHHHhhhhHH
Q 014240 306 KDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFV 352 (428)
Q Consensus 306 RdIl~~iE~g~~Pe~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~G~~ 352 (428)
-.++... |.. ..+...-.+|...+ +..++.+|++-..
T Consensus 209 ~~~L~~~-----~~~----~~~~~~~~~W~~~l-~~gl~~iL~sr~~ 245 (543)
T PF05536_consen 209 SAFLPRS-----PIL----PLESPPSPKWLSDL-RKGLRDILQSRLT 245 (543)
T ss_pred HHhcCcC-----Ccc----ccccCChhhhHHHH-HHHHHHHHhcCCC
Confidence 2332222 111 22344555777765 5777888877554
No 69
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.66 E-value=3e+02 Score=31.38 Aligned_cols=297 Identities=17% Similarity=0.156 Sum_probs=160.9
Q ss_pred hchhhhHHHHHHHhcc--cchHHHHHHHHHHHHHHH----hhhhhhhhhhhHhHHHHHHHhhhcCCCHHH---HHHHHHH
Q 014240 32 LEKDTLLDEALDALYE--KRGSTREKALSSIIEAFN----NTLQHQFVEKKFATLLHQCLSSIKRGSSRE---IALASHA 102 (428)
Q Consensus 32 ~~~~~~l~~~id~l~e--Kr~stR~~aL~~l~~al~----~~~~~~fi~~~~~TL~~~~~~sikkg~~~E---~~lA~~~ 102 (428)
+-...++.-++..|.+ ++++.=--|+.+|.+++- +..+.++....+..++.++++.--+.++.| +..|..+
T Consensus 445 ~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA 524 (859)
T KOG1241|consen 445 ELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEA 524 (859)
T ss_pred hhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence 3445677777777754 344443445555555443 333445666778888888888776666555 5667777
Q ss_pred HhHheeecCCCCchHHHHHh---hhHH----HHHHhh----cCCC--h--HHHHHHHHHHHHHHHHcCCC-hHHHHHHHH
Q 014240 103 IGLLALTVGYGENSREILEE---SVAP----ISQALK----SGFD--S--SKIASLLECLAVITFVGGND-PEETERTMQ 166 (428)
Q Consensus 103 l~Ll~l~lg~~~~~eei~~~---~~~~----L~~~l~----d~s~--~--~~r~~~~~aLai~~fv~~~d-~~~~~~~m~ 166 (428)
++=+...... .+|.. +.++ |.+.+. +-.+ . ..-.-.|.+|+.+.-..+.| ++.....|.
T Consensus 525 LmElIk~st~-----~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~ 599 (859)
T KOG1241|consen 525 LMELIKNSTD-----DVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMG 599 (859)
T ss_pred HHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHH
Confidence 7666554442 33332 2222 222222 1111 1 22233467788777666656 456678999
Q ss_pred HHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhh-cCCChHHHHHHHHHHHHHHH
Q 014240 167 IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLL-DKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 167 ~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL-~s~d~~VRiAAGEaiALl~E 245 (428)
.|..++.++ .++.++.-|+-|.+-|...+...=. +......|+|..-| ...+.-|-.+| ++|.=.
T Consensus 600 lflri~~s~---------~s~~v~e~a~laV~tl~~~Lg~~F~--kym~~f~pyL~~gL~n~~e~qVc~~a---VglVgd 665 (859)
T KOG1241|consen 600 LFLRIFESK---------RSAVVHEEAFLAVSTLAESLGKGFA--KYMPAFKPYLLMGLSNFQEYQVCAAA---VGLVGD 665 (859)
T ss_pred HHHHHHcCC---------ccccchHHHHHHHHHHHHHHhHhHH--HHHHHHHHHHHHHhhcchHHHHHHHH---HHHHHH
Confidence 999999872 4556778888888888877665421 22334445555445 34456666665 455555
Q ss_pred hcccccccccccCCCCCChhhhhhhhchHHHHHHHH-HHHHhhhcCCCccchhhHHHHHHHHHHHHHHhcCCCCc-----
Q 014240 246 TGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQV-RNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPE----- 319 (428)
Q Consensus 246 ~~~~~~~~~e~~~~~d~~~~~y~~~~~~~~~l~~~l-~~La~d~s~K~~aKkDrk~qRs~FRdIl~~iE~g~~Pe----- 319 (428)
+.|. ..+ .+.+| .+.+++.| +.|++ .+-+|.=| -..-|+|-||--.|+..--|=
T Consensus 666 l~ra--L~~-----------~i~py---~d~~mt~Lvq~Lss--~~~hR~vK--P~IlS~FgDIAlaIg~~F~~Yl~~vm 725 (859)
T KOG1241|consen 666 LARA--LED-----------DILPY---CDELMTVLVQCLSS--PNLHRNVK--PAILSVFGDIALAIGADFEPYLEMVM 725 (859)
T ss_pred HHHH--HHh-----------hhhhH---HHHHHHHHHHHccC--cccccccc--chHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5542 111 11121 34444333 34433 23444433 577899999999998763331
Q ss_pred ------eeEEEcCeeEEEchhHHHHHHHHHHHHhhh--hHHhhh--hhC-hhHHhhhCC
Q 014240 320 ------TSTKIGGESLKTSNWSQLIQLNFLKHFLGG--GFVKHM--QEN-EFLHDVFGF 367 (428)
Q Consensus 320 ------~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~--G~~~Hl--~~N-~~lrdif~l 367 (428)
-.++.......-.-+...+|-+.|-.+-|- |+..|- +.+ |++.-||.|
T Consensus 726 ~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sf 784 (859)
T KOG1241|consen 726 PLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISF 784 (859)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHH
Confidence 122222222223334445555555555552 555432 222 566666654
No 70
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=58.82 E-value=1.8e+02 Score=31.53 Aligned_cols=134 Identities=17% Similarity=0.169 Sum_probs=74.8
Q ss_pred hhHHHHHHHhccc----chHHHHHHHHHHHHHHHhhhhh------hhh-hhhHhHHHHHHHhhhcCCCHHHHHHHHHHHh
Q 014240 36 TLLDEALDALYEK----RGSTREKALSSIIEAFNNTLQH------QFV-EKKFATLLHQCLSSIKRGSSREIALASHAIG 104 (428)
Q Consensus 36 ~~l~~~id~l~eK----r~stR~~aL~~l~~al~~~~~~------~fi-~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~ 104 (428)
+.++.+.+.+..+ ....|..|+-++-.+. +++.. .++ ..-..-|...+..+..++...|+.+++++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv-~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLV-RRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHH-HHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 3566666666533 2233666665554333 22221 111 2233445555566666777888999999999
Q ss_pred HheeecCCCCchHHHHHhhhHHHHHHhh-cCCC-hHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCcccc
Q 014240 105 LLALTVGYGENSREILEESVAPISQALK-SGFD-SSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVA 182 (428)
Q Consensus 105 Ll~l~lg~~~~~eei~~~~~~~L~~~l~-d~s~-~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a 182 (428)
- +|.. . ..++|...+. +... ...|..|+.||--++..+ +. ...+.++.|+...
T Consensus 472 N----~g~~----~----~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~---p~---~v~~~l~~i~~n~------- 526 (574)
T smart00638 472 N----AGHP----S----SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD---PR---KVQEVLLPIYLNR------- 526 (574)
T ss_pred c----cCCh----h----HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC---ch---HHHHHHHHHHcCC-------
Confidence 6 4431 2 3344455455 3333 377999999997444433 33 3445567766542
Q ss_pred CCCCHHHHHHHHHH
Q 014240 183 TRPSAPIITAMVSA 196 (428)
Q Consensus 183 ~~~~~~l~~AAL~a 196 (428)
..++.|-.||+..
T Consensus 527 -~e~~EvRiaA~~~ 539 (574)
T smart00638 527 -AEPPEVRMAAVLV 539 (574)
T ss_pred -CCChHHHHHHHHH
Confidence 2556788877643
No 71
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.82 E-value=3.4e+02 Score=31.44 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=96.3
Q ss_pred hHHHHHHHhccc-chHHHHHHHHHHHHHHHhh---hhhhhhhhhHhHHHHHHHhhhcCCC-HHHHHHHHHHHhHheeecC
Q 014240 37 LLDEALDALYEK-RGSTREKALSSIIEAFNNT---LQHQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVG 111 (428)
Q Consensus 37 ~l~~~id~l~eK-r~stR~~aL~~l~~al~~~---~~~~fi~~~~~TL~~~~~~sikkg~-~~E~~lA~~~l~Ll~l~lg 111 (428)
++++.|.+|.-- =-+.-.+||..+++.|.-- .+.-| -..+++..+..-++-.. .+=+.+|+|++.-||=-++
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~f---pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGF---PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccc---cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 566666666433 2233466777777766521 12222 24667777777776554 3346899999999997676
Q ss_pred CCCchHHHH-HhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHhccCCCCccccCCCCHH
Q 014240 112 YGENSREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQI--MWQIVHPKLGSNVVATRPSAP 188 (428)
Q Consensus 112 ~~~~~eei~-~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~--l~~i~~~~~g~~~~a~~~~~~ 188 (428)
.. +.-+. +...|+|..-+.--.=-.+--.|+.||=.+.-.-...+-.+-.+|.+ ++++|.- .++
T Consensus 245 ~S--~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi-----------~aQ 311 (1051)
T KOG0168|consen 245 RS--SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSI-----------HAQ 311 (1051)
T ss_pred ch--hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHH-----------HHH
Confidence 42 22222 24777776543322211121234555544433311111111122222 1222211 112
Q ss_pred HHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 189 IITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 189 l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
-+|-|+-+=++. .+++... +.+-+++|.|..+|+..|.-+=-.+.-+++-|.|-+
T Consensus 312 R~AlaiaaN~Ck--si~sd~f--~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 312 RVALAIAANCCK--SIRSDEF--HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHHHHh--cCCCccc--hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 222222222222 3344333 345588999999998888766666666666666654
No 72
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.74 E-value=3.3e+02 Score=30.28 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhHhcCCCC
Q 014240 187 APIITAMVSAWSFLLTTMDGC 207 (428)
Q Consensus 187 ~~l~~AAL~aW~lLlT~~~~~ 207 (428)
.-|.-+|+-|.+++++.+.+.
T Consensus 635 dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 635 DFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred HHHHHHHHHHHHHHHhhcCcc
Confidence 357789999999999998875
No 73
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=55.40 E-value=1.1e+02 Score=32.46 Aligned_cols=148 Identities=17% Similarity=0.151 Sum_probs=83.8
Q ss_pred hhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCC--CchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHH
Q 014240 70 HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG--ENSREILEESVAPISQALKSGFDSSKIASLLECL 147 (428)
Q Consensus 70 ~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~--~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aL 147 (428)
...+......|+..+.+.++++...|-..-.+++-=+.++++.+ +-+..+...+...|..+.+.++++.=-.-+-+++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 35566677899999999998865344333334443333333322 3367778888888888888888887777889999
Q ss_pred HHHHHHcCC-ChHHHHHHH----HHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCcc------------c
Q 014240 148 AVITFVGGN-DPEETERTM----QIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSL------------D 210 (428)
Q Consensus 148 ai~~fv~~~-d~~~~~~~m----~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~------------~ 210 (428)
|++--++|. +++.+...- ..|..|+.. + -...+--+++=.+.|+..-++..+ .
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~-d---------V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~ 166 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQEILQQ-D---------VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLS 166 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHHHHHT-T----------TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTS
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcC
Confidence 988888775 444222222 234445543 2 224455556666677666552211 1
Q ss_pred hhhHH--hhHHHHHhhhcC
Q 014240 211 SKKWQ--QSISYFSTLLDK 227 (428)
Q Consensus 211 ~~~~~--~~l~~L~~lL~s 227 (428)
+..|+ ..+|.|+.+|.+
T Consensus 167 p~lWe~~gniPalvrLL~a 185 (435)
T PF03378_consen 167 PALWERRGNIPALVRLLQA 185 (435)
T ss_dssp GGGGGSTTTHHHHHHHHHH
T ss_pred cchhccCCCcCcHHHHHHH
Confidence 22342 447888888864
No 74
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=53.85 E-value=3.5e+02 Score=30.07 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=91.2
Q ss_pred hHhHHHHHHHhhhcCCCHHHHHHHHHHHhHhe-eecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHc
Q 014240 76 KFATLLHQCLSSIKRGSSREIALASHAIGLLA-LTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVG 154 (428)
Q Consensus 76 ~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~-l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~ 154 (428)
.+..+-.-.++.++..-+.=...|+++++-++ +-+. ...|.++...+.+-+-+...++.+ +.+|++|.+.|
T Consensus 91 ~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp-----~~~wp~lm~~mv~nvg~eqp~~~k---~~sl~~~gy~c 162 (858)
T COG5215 91 SKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELP-----NSLWPGLMEEMVRNVGDEQPVSGK---CESLGICGYHC 162 (858)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCc-----cccchHHHHHHHHhccccCchHhH---HHHHHHHHHHh
Confidence 44556666677775444556677778777665 3333 245666655665555555444433 46799999998
Q ss_pred CC-ChHHHHHHHH-HHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHH
Q 014240 155 GN-DPEETERTMQ-IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSI 232 (428)
Q Consensus 155 ~~-d~~~~~~~m~-~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~V 232 (428)
.+ +|+++...-. +++.|+...... .++.++.-|||.+..=-+-.+-..--..+.-.=.+....+.-+++|.+|
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~-----et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~ 237 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKN-----ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEEL 237 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhccc-----CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHH
Confidence 76 5655544333 466666431111 3566888888887654332222211110100112344556678999999
Q ss_pred HHHHHHHHHHHHHhc
Q 014240 233 RIAAGEALALILETG 247 (428)
Q Consensus 233 RiAAGEaiALl~E~~ 247 (428)
+-||=-++-=|.=++
T Consensus 238 q~aafgCl~kim~Ly 252 (858)
T COG5215 238 QHAAFGCLNKIMMLY 252 (858)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999877766555544
No 75
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.24 E-value=3.5e+02 Score=29.88 Aligned_cols=202 Identities=18% Similarity=0.249 Sum_probs=103.1
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHH
Q 014240 39 DEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSRE 118 (428)
Q Consensus 39 ~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ee 118 (428)
...=|.++|||-.+ .--|+.+++-|...-.++.+.+-...|+.-+..+.-.+..+ .-++|+.++.+|-|.+...
T Consensus 7 r~ltdKlYekRKaa-alelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk-----GgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAA-ALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRK-----GGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred hhhhhHHHHHHHHH-HHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccccc-----chHHHHHHHHHHhccccHH
Confidence 34456777777532 11244555555555555555555555555555544333211 1344444444333333333
Q ss_pred HHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHhccCCCCc-------------cccCC
Q 014240 119 ILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDP-EETERTMQIMWQIVHPKLGSN-------------VVATR 184 (428)
Q Consensus 119 i~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~-~~~~~~m~~l~~i~~~~~g~~-------------~~a~~ 184 (428)
-.+.+.||+..-. ...+...|-.+|.+|=-++=++-.+. -=..+..+.+|.+..-.+++. ++...
T Consensus 81 Y~~~iv~Pv~~cf-~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCF-SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhc-cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc
Confidence 4556666654332 33445667777777655554433221 112233444444433221100 00000
Q ss_pred C---C---------------HHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHH-HHHHH
Q 014240 185 P---S---------------APIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEAL-ALILE 245 (428)
Q Consensus 185 ~---~---------------~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEai-ALl~E 245 (428)
. + .+-.=-.+-.|--+|-..|+.++- -.+.+.++-|-..|+.++.+||.-+--++ -++.|
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~-~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI-SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH-hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 0 0 011224677899998888887665 24566677788888999999996555444 36667
Q ss_pred hcc
Q 014240 246 TGS 248 (428)
Q Consensus 246 ~~~ 248 (428)
+..
T Consensus 239 I~s 241 (675)
T KOG0212|consen 239 IRS 241 (675)
T ss_pred Hhc
Confidence 654
No 76
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.69 E-value=1.4e+02 Score=32.52 Aligned_cols=135 Identities=22% Similarity=0.262 Sum_probs=79.2
Q ss_pred HHHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHH-----HHH
Q 014240 97 ALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQI-----MWQ 170 (428)
Q Consensus 97 ~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~-----l~~ 170 (428)
.-|+|++|- +..|.+.....+.+ ..+|+|..++........|..||++++-+| +...+-+...|+. +..
T Consensus 297 ~PaLRaiGN--IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt---AG~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 297 TPALRAIGN--IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT---AGNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred cHHHhhccc--eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh---cCCHHHHHHHHHcccHHHHHH
Confidence 345666665 44555444444444 588889888885555555666777775444 3456666666653 333
Q ss_pred HhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhH--HhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 171 IVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW--QQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 171 i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~--~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
++.. .+-.+--. .+|++-=.+..+..-.-.++ +..++.|..+|...|+.+-..+=++|-.|+..+.
T Consensus 372 ~l~~----------~ef~~rKE--AawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 372 LLQT----------AEFDIRKE--AAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHhc----------cchHHHHH--HHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 3332 11122222 24665433323221111111 3568999999999999998888999999988873
No 77
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.21 E-value=1.1e+02 Score=32.85 Aligned_cols=119 Identities=16% Similarity=0.148 Sum_probs=76.4
Q ss_pred hHHHHHHHhccc----chHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCC
Q 014240 37 LLDEALDALYEK----RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGY 112 (428)
Q Consensus 37 ~l~~~id~l~eK----r~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~ 112 (428)
.|...+..+.+| .++.|--|+..|...++- .|+-+..++.++++.+.+.+=-+..+|..+ .++..|...++-
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~--~P~kv~th~~~~ldaii~gL~D~~~~~V~l--eam~~Lt~v~~~ 330 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASG--APDKVRTHKTTQLDAIIRGLYDDLNEEVQL--EAMKCLTMVLEK 330 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc--CcHHHHHhHHHHHHHHHHHHhcCCccHHHH--HHHHHHHHHHHh
Confidence 455666666655 455699999988877654 788888899999999999996665555332 222222222221
Q ss_pred CCchHHHHHhhhHHHHHHhh--cCCChHHHHHHHHHHHHHHHHcCCChHH
Q 014240 113 GENSREILEESVAPISQALK--SGFDSSKIASLLECLAVITFVGGNDPEE 160 (428)
Q Consensus 113 ~~~~eei~~~~~~~L~~~l~--d~s~~~~r~~~~~aLai~~fv~~~d~~~ 160 (428)
- ....+..-+.|+-.++.+ +..++..|++++..+|.+.-++|.+.++
T Consensus 331 ~-~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~ 379 (533)
T KOG2032|consen 331 A-SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEE 379 (533)
T ss_pred h-hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchh
Confidence 0 011222224444444443 6777899999999999999998876543
No 78
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=48.59 E-value=2.2e+02 Score=30.77 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=55.9
Q ss_pred HHHHhhhHHHHHHhhcC---CChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHH
Q 014240 118 EILEESVAPISQALKSG---FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMV 194 (428)
Q Consensus 118 ei~~~~~~~L~~~l~d~---s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL 194 (428)
.+.+.+.|+|.+.+... .+...+.-++.|||-+ ..+.. ...+.-++. |. ...++.+..+|+
T Consensus 438 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~-----g~~~~----i~~l~~~l~---~~----~~~~~~iR~~Av 501 (574)
T smart00638 438 FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA-----GHPSS----IKVLEPYLE---GA----EPLSTFIRLAAI 501 (574)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc-----CChhH----HHHHHHhcC---CC----CCCCHHHHHHHH
Confidence 45677778877766643 3445667778888632 12222 233333343 21 135668999999
Q ss_pred HHHHHhHhcCCCCccchhhHHhhHHHHHhhh-c-CCChHHHHHHHHHH
Q 014240 195 SAWSFLLTTMDGCSLDSKKWQQSISYFSTLL-D-KDDRSIRIAAGEAL 240 (428)
Q Consensus 195 ~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL-~-s~d~~VRiAAGEai 240 (428)
.|.-.+.-..|.. + .+.|..+. + ..+.+|||||--.|
T Consensus 502 ~Alr~~a~~~p~~-v--------~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 502 LALRNLAKRDPRK-V--------QEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHhCchH-H--------HHHHHHHHcCCCCChHHHHHHHHHH
Confidence 8888665444332 1 23333333 3 56899999985443
No 79
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=48.51 E-value=30 Score=22.71 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.8
Q ss_pred hhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 216 QSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 216 ~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
..+|.|..+|.+++.+++..|--+|.-|
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999988887654
No 80
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.65 E-value=3.8e+02 Score=30.27 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
.++.|+++|+.| ||++-...++. +..-...+++|.-++.+||+||-..+-+.--.
T Consensus 210 ~D~~Vrt~A~eg---lL~L~eg~kL~----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~ 264 (823)
T KOG2259|consen 210 QDFRVRTHAVEG---LLALSEGFKLS----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNR 264 (823)
T ss_pred CCcchHHHHHHH---HHhhccccccc----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 455789999998 34444455444 23445567888888999999998887776443
No 81
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=47.52 E-value=4.4e+02 Score=29.35 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=141.1
Q ss_pred hhhhhhhhHhHHHHHHHhhhcC-CC-HHHHHHHHHHHhHheeecCCCCchHHHHHhhh-----------HHHHHHhhcCC
Q 014240 69 QHQFVEKKFATLLHQCLSSIKR-GS-SREIALASHAIGLLALTVGYGENSREILEESV-----------APISQALKSGF 135 (428)
Q Consensus 69 ~~~fi~~~~~TL~~~~~~sikk-g~-~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~-----------~~L~~~l~d~s 135 (428)
++-|+.+.+..|++++++.-.. +. ..-+.-+..+++-+.+-..+ . .-++...+. .++.+++.-..
T Consensus 488 ~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d-~-V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD 565 (858)
T COG5215 488 VESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD-A-VSDILAGFYDYTSKKLDECISVLGQILATED 565 (858)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch-h-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 4566777778888888775432 22 12244455566555543332 1 122222222 22222222111
Q ss_pred --Ch-HHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccch
Q 014240 136 --DS-SKIASLLECLAVITFVGGNDPEETER-TMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDS 211 (428)
Q Consensus 136 --~~-~~r~~~~~aLai~~fv~~~d~~~~~~-~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~ 211 (428)
.. ......|.-|..+.---..|.+++++ .|++|..+.++++.+ .++--.+-|-+-|.|.+... . .
T Consensus 566 ~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t---------~~~~dV~~aIsal~~sl~e~-F-e 634 (858)
T COG5215 566 QLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPT---------TAFGDVYTAISALSTSLEER-F-E 634 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCc---------hhhhHHHHHHHHHHHHHHHH-H-H
Confidence 11 22233333343333335667788886 999999999885322 22222233333344443332 1 1
Q ss_pred hhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcccccccccccCCCCCChhhhhhhhchHHHHHHHHHHHHhhhcCC
Q 014240 212 KKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGK 291 (428)
Q Consensus 212 ~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~d~~~~~y~~~~~~~~~l~~~l~~La~d~s~K 291 (428)
..+...+|+|..-|.+.|.-|-+.| +.|+-.+++. ..++ ...|.+ .+...|.+.|.. +.-
T Consensus 635 ~y~~~fiPyl~~aln~~d~~v~~~a---vglvgdlant--l~~d--------f~~y~d--~~ms~LvQ~lss-----~~~ 694 (858)
T COG5215 635 QYASKFIPYLTRALNCTDRFVLNSA---VGLVGDLANT--LGTD--------FNIYAD--VLMSSLVQCLSS-----EAT 694 (858)
T ss_pred HHHhhhhHHHHHHhcchhHHHHHHH---HHHHHHHHHH--hhhh--------HHHHHH--HHHHHHHHHhcC-----hhh
Confidence 3445667888877888888887765 4555555542 1111 123321 122333333222 122
Q ss_pred CccchhhHHHHHHHHHHHHHHhcCCCC-----------ceeEEEcCeeEEEchhHHHHHHHHHHHHhhhhHHhh--h-hh
Q 014240 292 GSAKKDLTSQRNLFKDILEFLEYGYCP-----------ETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKH--M-QE 357 (428)
Q Consensus 292 ~~aKkDrk~qRs~FRdIl~~iE~g~~P-----------e~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~G~~~H--l-~~ 357 (428)
+|. =|-..-|.|-||--.|+..--| -..++=.++.++++-+.+..+.-..+...|=|=..| . .-
T Consensus 695 ~R~--lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v 772 (858)
T COG5215 695 HRD--LKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSV 772 (858)
T ss_pred ccc--cchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHh
Confidence 222 2356789999999888765333 123445688999999999999999999998777666 1 12
Q ss_pred ChhHHhhhCC
Q 014240 358 NEFLHDVFGF 367 (428)
Q Consensus 358 N~~lrdif~l 367 (428)
=|.++.||.+
T Consensus 773 ~Pyv~sif~~ 782 (858)
T COG5215 773 LPYVISIFHK 782 (858)
T ss_pred hhHHHHHHHH
Confidence 3556666655
No 82
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=47.45 E-value=5.9e+02 Score=30.80 Aligned_cols=187 Identities=17% Similarity=0.143 Sum_probs=98.7
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhH-he-eecCCCCc
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGL-LA-LTVGYGEN 115 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~L-l~-l~lg~~~~ 115 (428)
+--+|-.+ |-..++.+||+=| ..|+... . -+.+..+++.-+..++......=++.|...++= |+ ++--+..+
T Consensus 427 lts~IR~l--k~~~tK~~ALeLl-~~lS~~i-~--de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 427 LTSCIRAL--KTIQTKLAALELL-QELSTYI-D--DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHhh--hcchhHHHHHHHH-HHHhhhc-c--hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 34444444 4455677777533 2233221 1 234667888888888866655555555544432 22 23223334
Q ss_pred hHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHc------------C---CChHH-----------HHHHHHHH
Q 014240 116 SREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVG------------G---NDPEE-----------TERTMQIM 168 (428)
Q Consensus 116 ~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~------------~---~d~~~-----------~~~~m~~l 168 (428)
+ .||- =++|.|..++.|.+..-+|++-+.|||.++-.+ . ++++. ...+.+.+
T Consensus 501 a-niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 501 A-NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred c-hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 4 4554 599999999999877777777777777655221 1 11111 11222222
Q ss_pred HHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHH
Q 014240 169 WQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (428)
Q Consensus 169 ~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiA 241 (428)
.+.+.+-. .++++.|--|-|++-+.|--.....+-| + -.++.|.+.|...|-.+|-|==|.|+
T Consensus 580 ~~~v~sLl------sd~~~~Vkr~Lle~i~~LC~FFGk~ksN-D---~iLshLiTfLNDkDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 580 EQMVSSLL------SDSPPIVKRALLESIIPLCVFFGKEKSN-D---VILSHLITFLNDKDWRLRGAFFDSIV 642 (1431)
T ss_pred HHHHHHHH------cCCchHHHHHHHHHHHHHHHHhhhcccc-c---chHHHHHHHhcCccHHHHHHHHhhcc
Confidence 22111100 1233456667777744444333333333 2 33566777777777777777655555
No 83
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=46.96 E-value=2e+02 Score=25.17 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHh-cccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240 38 LDEALDAL-YEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 38 l~~~id~l-~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
+++.|+.+ .++..+.--.+.-.|++...+.. ..--..+..+-+-|+++.+.++.+|+.++-.++-..|.
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~------~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~---- 75 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSP------DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGP---- 75 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTST------THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH----
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH----
Confidence 45555533 34444444445555666655541 12245556677788889999999999999999998883
Q ss_pred HHHHH-----hhhHHHHHHhhcCCChH---HHHHHHHHHH
Q 014240 117 REILE-----ESVAPISQALKSGFDSS---KIASLLECLA 148 (428)
Q Consensus 117 eei~~-----~~~~~L~~~l~d~s~~~---~r~~~~~aLa 148 (428)
.+.. ++...|.+++.+..... +|..++..+.
T Consensus 76 -~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 76 -RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp -HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred -HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 3322 35666777777766543 5555544433
No 84
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=46.81 E-value=1.3e+02 Score=24.67 Aligned_cols=73 Identities=21% Similarity=0.129 Sum_probs=52.5
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecC
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVG 111 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg 111 (428)
+.+++++..|.+.=.-+|..||..|.+.+.++- +.......++..++..++-..+==-.-|.+.++.||-..+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 458899999999888899999999999988776 3334567888888888854421113455666666655444
No 85
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=46.15 E-value=86 Score=32.48 Aligned_cols=132 Identities=12% Similarity=0.107 Sum_probs=73.2
Q ss_pred HHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhh----cCCCh-HHHHHHHHHHHHHHHHcC------CChHHHHHH
Q 014240 96 IALASHAIGLLALTVGYGENSREILEESVAPISQALK----SGFDS-SKIASLLECLAVITFVGG------NDPEETERT 164 (428)
Q Consensus 96 ~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~----d~s~~-~~r~~~~~aLai~~fv~~------~d~~~~~~~ 164 (428)
+..|+.++--||-..+ ..+..-+...+..+++ +++.. ..+-.|+.-++.++.-+. .+..+....
T Consensus 228 R~AA~dfl~~L~~~~~-----~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFE-----KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred HHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 4466666665554443 2344444445555555 44332 334444444443333331 233344566
Q ss_pred HHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHH
Q 014240 165 MQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240 (428)
Q Consensus 165 m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEai 240 (428)
.+++...+-|..-. .....|-+.+.||.--.---..++ .+.+...+|.+...|.+++.-|+.=|+.+|
T Consensus 303 ~~Ff~~~v~peL~~---~~~~~piLka~aik~~~~Fr~~l~-----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQP---DVNSHPILKADAIKFLYTFRNQLP-----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGGS------HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcc---cCCCCcchHHHHHHHHHHHHhhCC-----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 77888877663221 113567888888865554444444 356678999999999999999999888775
No 86
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=45.51 E-value=5.2e+02 Score=29.59 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=83.4
Q ss_pred hcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 014240 88 IKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVITFVGGNDPEETERTMQ 166 (428)
Q Consensus 88 ikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~-~~r~~~~~aLai~~fv~~~d~~~~~~~m~ 166 (428)
+.++...++.=|.+-+.- .++.|. + +..++|.+.+-+. ..+. -+|. ++ | =+-.++...+++...+..
T Consensus 28 l~s~n~~~kidAmK~iIa-~M~~G~--d----mssLf~dViK~~~-trd~ElKrL--~y-l-Yl~~yak~~P~~~lLavN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIA-QMSLGE--D----MSSLFPDVIKNVA-TRDVELKRL--LY-L-YLERYAKLKPELALLAVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHH-HHhcCC--C----hHHHHHHHHHHHH-hcCHHHHHH--HH-H-HHHHHhccCHHHHHHHHH
Confidence 666667777655554332 344553 3 4445555544444 4444 4442 11 1 112235556766555555
Q ss_pred HHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 167 IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 167 ~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
.+..=+. .+++-+.+.||+.-+.| . . ++++...++.+..+|.+++.-||..|.-+|+=||.+
T Consensus 96 ti~kDl~----------d~N~~iR~~AlR~ls~l----~---~-~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 96 TIQKDLQ----------DPNEEIRGFALRTLSLL----R---V-KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHHhhcc----------CCCHHHHHHHHHHHHhc----C---h-HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 5543221 37789999999976654 2 2 367889999999999999999999999999999998
Q ss_pred cc
Q 014240 247 GS 248 (428)
Q Consensus 247 ~~ 248 (428)
..
T Consensus 158 d~ 159 (757)
T COG5096 158 DK 159 (757)
T ss_pred CH
Confidence 74
No 87
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.51 E-value=1.7e+02 Score=30.66 Aligned_cols=138 Identities=18% Similarity=0.158 Sum_probs=73.1
Q ss_pred HHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcC---CChHHHHHHHHHHHHHHHHcCCChH
Q 014240 83 QCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSG---FDSSKIASLLECLAVITFVGGNDPE 159 (428)
Q Consensus 83 ~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~---s~~~~r~~~~~aLai~~fv~~~d~~ 159 (428)
.+...+|.|...=|..+++++++++++-- ...+..+..|-|...+-+- .++.+++.+..||+.++ +|.+
T Consensus 212 vLVsll~s~d~dvqyycttaisnIaVd~~----~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnla----sdt~ 283 (550)
T KOG4224|consen 212 VLVSLLKSGDLDVQYYCTTAISNIAVDRR----ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLA----SDTE 283 (550)
T ss_pred hhhhhhccCChhHHHHHHHHhhhhhhhHH----HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhc----ccch
Confidence 45566777888889999999999988765 4677877777665544433 22333344444554432 2222
Q ss_pred HHHHHHH-----HHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChH-HH
Q 014240 160 ETERTMQ-----IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRS-IR 233 (428)
Q Consensus 160 ~~~~~m~-----~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~-VR 233 (428)
=..+..+ .+..++.+ +..+++.+.+.+--- +++-|..+..- .=+..+..|+.+|...|-+ ++
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs----------~~~plilasVaCIrn-isihplNe~lI-~dagfl~pLVrlL~~~dnEeiq 351 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQS----------PMGPLILASVACIRN-ISIHPLNEVLI-ADAGFLRPLVRLLRAGDNEEIQ 351 (550)
T ss_pred hhhHHHhcCCchHHHHHHhC----------cchhHHHHHHHHHhh-cccccCcccce-ecccchhHHHHHHhcCCchhhh
Confidence 1111111 23333322 334455544332211 34434332210 0024466789999877644 88
Q ss_pred HHHHHHH
Q 014240 234 IAAGEAL 240 (428)
Q Consensus 234 iAAGEai 240 (428)
.+|-.++
T Consensus 352 chAvstL 358 (550)
T KOG4224|consen 352 CHAVSTL 358 (550)
T ss_pred hhHHHHH
Confidence 8776543
No 88
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=44.43 E-value=2.1e+02 Score=24.78 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=44.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhc--CCChHHHHHHHHHHHHHH
Q 014240 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKS--GFDSSKIASLLECLAVIT 151 (428)
Q Consensus 81 ~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d--~s~~~~r~~~~~aLai~~ 151 (428)
+..+.+-|++|++.++.+|+.++-.+.-..|..- -.+|.. +++.-|.+++.. ..+..+|..++..+.--+
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f-~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPF-HLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHH-HHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3345566778899999999999999999998521 122222 344456666665 345566666665554333
No 89
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=43.10 E-value=92 Score=34.64 Aligned_cols=131 Identities=11% Similarity=0.094 Sum_probs=81.0
Q ss_pred HHHHHHHHhHheeecCCCCchHHHHHhhhHHHH---HHhhcCCChHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH
Q 014240 96 IALASHAIGLLALTVGYGENSREILEESVAPIS---QALKSGFDSSKIASLLECLAVITFV-GGNDPEETERTMQIMWQI 171 (428)
Q Consensus 96 ~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~---~~l~d~s~~~~r~~~~~aLai~~fv-~~~d~~~~~~~m~~l~~i 171 (428)
+--..+++--+|+-+|- .+...+.|.|+ ..+.|.+. -+|+-.+.+|+-++=. +--+.+...+.+.-+|.-
T Consensus 334 RhTgiri~qqI~~llG~-----s~l~hl~~l~~ci~~~l~D~~~-~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g 407 (975)
T COG5181 334 RHTGIRIAQQICELLGR-----SRLSHLGPLLKCISKLLKDRSR-FVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG 407 (975)
T ss_pred hchhhHHHHHHHHHhCc-----cHHhhhhhHHHHHHHHhhccce-eeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34556666666666774 34444444433 33333332 3345555555544433 333556666777778876
Q ss_pred hccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 172 VHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 172 ~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
+.. ......++-|.|-||.+.++++.... ..-.+++..+-..++|+|-++. -+-+.+|-.+
T Consensus 408 ~~~----------hrgk~l~sfLkA~g~iiplm~peYa~-h~tre~m~iv~ref~spdeemk-----k~~l~v~~~C 468 (975)
T COG5181 408 ASQ----------HRGKELVSFLKAMGFIIPLMSPEYAC-HDTREHMEIVFREFKSPDEEMK-----KDLLVVERIC 468 (975)
T ss_pred HHh----------cCCchHHHHHHHhccccccCChHhhh-hhHHHHHHHHHHHhCCchhhcc-----hhHHHHHHHH
Confidence 655 22357889999999999999987554 4557888888889999887643 3445555443
No 90
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=42.01 E-value=2.1e+02 Score=24.96 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=42.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChH-HHHHHHHH
Q 014240 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSS-KIASLLEC 146 (428)
Q Consensus 82 ~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~-~r~~~~~a 146 (428)
..+.+-|+.+++.++.+|+.++..++-..|..-..+-..+.+...|.+++.+..... ++..++..
T Consensus 40 r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l 105 (133)
T smart00288 40 RLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL 105 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 345566778889999999999999999998532122223346667777777665433 55444433
No 91
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=41.56 E-value=78 Score=32.06 Aligned_cols=55 Identities=22% Similarity=0.214 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 188 PIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 188 ~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
.++.+.|.-=.+||-.|....+- .....|..||.++|.+|.++|=+.++.+.+..
T Consensus 3 elv~~IL~Ft~lLLEnc~NRslY-----sS~e~L~~LL~s~~~dVl~~aL~ll~~l~qr~ 57 (329)
T PF06012_consen 3 ELVLAILRFTRLLLENCGNRSLY-----SSSEHLNSLLNSTDLDVLLAALRLLLRLAQRY 57 (329)
T ss_pred HHHHHHHHHHHHHHhccCCCCcc-----ccHHHHHHHHcCCCHHHHHHHHHHHHHHHhhh
Confidence 57788888888999888887665 56789999999999999999999999998884
No 92
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.45 E-value=4.5e+02 Score=29.98 Aligned_cols=148 Identities=15% Similarity=0.137 Sum_probs=75.5
Q ss_pred hHHHHHH-Hh-cccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC
Q 014240 37 LLDEALD-AL-YEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 37 ~l~~~id-~l-~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
.+..++. .+ --||.+.-..-|.-+...+.+..+.+-=++-+.-++..++|+.-..+..=+.-.+++++++.=..+.
T Consensus 41 eflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-- 118 (892)
T KOG2025|consen 41 EFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-- 118 (892)
T ss_pred HHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc--
Confidence 3455555 22 3577666343443333333333232222222344444555544333322234444455544332221
Q ss_pred chHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHH
Q 014240 115 NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMV 194 (428)
Q Consensus 115 ~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL 194 (428)
--+.+|..+..-|..-+.|. .+.+|..|.-|| |.+-+++.++-...-..+..++.. .|++.|.-|||
T Consensus 119 idd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aL---srlQ~d~~dee~~v~n~l~~liqn---------DpS~EVRRaaL 185 (892)
T KOG2025|consen 119 IDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLAL---SRLQGDPKDEECPVVNLLKDLIQN---------DPSDEVRRAAL 185 (892)
T ss_pred cCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHH---HHHhcCCCCCcccHHHHHHHHHhc---------CCcHHHHHHHH
Confidence 12578887776665555554 356676655454 677655545444556666666655 37778888887
Q ss_pred HHHHH
Q 014240 195 SAWSF 199 (428)
Q Consensus 195 ~aW~l 199 (428)
+.-+-
T Consensus 186 snI~v 190 (892)
T KOG2025|consen 186 SNISV 190 (892)
T ss_pred Hhhcc
Confidence 76543
No 93
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=38.76 E-value=3.3e+02 Score=25.37 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=61.5
Q ss_pred hcccchHHHHHHHHHHHHHHHhh-hhhhhhh-----------------hhHhHHHHHHHhhhcCCC-HHHHHHHHHHHhH
Q 014240 45 LYEKRGSTREKALSSIIEAFNNT-LQHQFVE-----------------KKFATLLHQCLSSIKRGS-SREIALASHAIGL 105 (428)
Q Consensus 45 l~eKr~stR~~aL~~l~~al~~~-~~~~fi~-----------------~~~~TL~~~~~~sikkg~-~~E~~lA~~~l~L 105 (428)
+.+-..+.|.+|+..+..+|..- ..--..+ ....++=..++..+.+.+ ..-....+++++.
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~ 128 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAV 128 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 44667788999998887777531 1001111 112333344455554443 4445677888888
Q ss_pred heeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 014240 106 LALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITF 152 (428)
Q Consensus 106 l~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~f 152 (428)
|+-...-.--..++...+...++..+.. .|..++.+++.|++++.-
T Consensus 129 Lv~~tPY~rL~~~ll~~~v~~v~~~l~~-~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 129 LVQATPYHRLPPGLLTEVVTQVRPLLRH-RDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHccCChhhcCHhHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 8765553222234444555555555555 667788888888876543
No 94
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.67 E-value=2.7e+02 Score=28.86 Aligned_cols=62 Identities=23% Similarity=0.194 Sum_probs=43.4
Q ss_pred HHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 014240 83 QCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLA 148 (428)
Q Consensus 83 ~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLa 148 (428)
.+++.+++.+..|..+++++++-..+|-+- +.+-.+.+.+++..++.|.+ ...|...+.||+
T Consensus 11 ~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~---sr~d~~~~~~l~~~Ll~d~s-~~vrr~lA~aL~ 72 (364)
T COG5330 11 DLIRLLEEASSGERALAARVLAFASLQRPL---SREDMRQFEDLARPLLDDSS-EEVRRELAAALA 72 (364)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHHhhCcc-HHHHHHHHHHHH
Confidence 355677778899999999999999999882 23444555555555555555 444566777887
No 95
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=38.63 E-value=1.5e+02 Score=25.24 Aligned_cols=102 Identities=19% Similarity=0.136 Sum_probs=53.2
Q ss_pred HHHHHHHhccc--chHHHHHHHHHHHHHHHhhhh-hhhhhhhHhHHHHHHHhhhcCCC---HHHHHHHHHHHhHheeecC
Q 014240 38 LDEALDALYEK--RGSTREKALSSIIEAFNNTLQ-HQFVEKKFATLLHQCLSSIKRGS---SREIALASHAIGLLALTVG 111 (428)
Q Consensus 38 l~~~id~l~eK--r~stR~~aL~~l~~al~~~~~-~~fi~~~~~TL~~~~~~sikkg~---~~E~~lA~~~l~Ll~l~lg 111 (428)
+.++++.|..+ ....-+.||...-+..+++.. +..+.+...+|+..++.-=.+-. =+|.. .+++.-++++.+
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R--~~alval~v~~P 82 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELR--QNALVALVVAAP 82 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHH--HHHHHHHHHHSG
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHH--HHHHHHHHHHhh
Confidence 67788888744 344568888888777776654 23466666777777766433332 22222 233333333333
Q ss_pred CCCchHHHHHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHH
Q 014240 112 YGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVI 150 (428)
Q Consensus 112 ~~~~~eei~~~~~~~L~~~l~d~s~~-~~r~~~~~aLai~ 150 (428)
. .+.|.|.+.+-.+.-+ ..|...+.+|+..
T Consensus 83 ~---------~~~~~L~~~f~~~~~Sl~qR~~iL~~l~~a 113 (114)
T PF10193_consen 83 E---------KVAPYLTEEFFSGDYSLQQRMSILSALSLA 113 (114)
T ss_dssp G---------GHHH-HHHHHTTS---THHHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 1 2566676766665544 7788888888764
No 96
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=38.50 E-value=2.2e+02 Score=32.86 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=66.5
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCC---HHH-HHHHHHHHhHheeecCC
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS---SRE-IALASHAIGLLALTVGY 112 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~---~~E-~~lA~~~l~Ll~l~lg~ 112 (428)
.+-.++|.+.+|++.-|..++..+..++... ...+++..++-.+|.|. ..| ..+-.+.+-. +++
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~----~~~ 404 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNST--------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK----LGP 404 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh----cCC
Confidence 4556889999999999999998777766633 23566667777777775 222 2222233322 221
Q ss_pred CCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 014240 113 GENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGN 156 (428)
Q Consensus 113 ~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~ 156 (428)
-.....-...+.|.+...+.|. +..+|-++..|+|.+--+-|.
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhH
Confidence 1112344566777776665553 456777888888877766554
No 97
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.37 E-value=5e+02 Score=27.36 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=102.2
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhcCCCh--HHHHHHHHHHHH------
Q 014240 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDS--SKIASLLECLAV------ 149 (428)
Q Consensus 79 TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d~s~~--~~r~~~~~aLai------ 149 (428)
.++..+..-.+.|+++=++.|.-++..++.+..- ..+|.+ ...|.+.+++++++-+ ..-++||+-+++
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y---q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY---QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchh---hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence 3777788888889999999999999999887754 345555 5899999999998866 556778755543
Q ss_pred -----------HHHHcCCChHHH-HHHHHHHHHHhccCC-------CCcccc-----CCCCHHHHHHHHHHHHHhHhcCC
Q 014240 150 -----------ITFVGGNDPEET-ERTMQIMWQIVHPKL-------GSNVVA-----TRPSAPIITAMVSAWSFLLTTMD 205 (428)
Q Consensus 150 -----------~~fv~~~d~~~~-~~~m~~l~~i~~~~~-------g~~~~a-----~~~~~~l~~AAL~aW~lLlT~~~ 205 (428)
+-.+.+.|-+++ ......+|.+..+.- +++... .-+.|.-+-.-++|.--.|+.-+
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND 407 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc
Confidence 334444455543 355556777654320 111000 01222223334444444444433
Q ss_pred CCccchhhHH-hhHHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 206 GCSLDSKKWQ-QSISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 206 ~~~~~~~~~~-~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
..+. .+++ ..+|.|.+++.+.+.+||=-|.++++=+.+-
T Consensus 408 ~~k~--~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 408 NDKE--ALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred ccHH--HHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 3221 1222 4478899999999999999999988876543
No 98
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=37.70 E-value=4.1e+02 Score=28.64 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=36.3
Q ss_pred hHHHHHHHhcc-cchHHHHHHHHHHHHHHHhhh--hhhhhhhhHhHHHHHHHhhhc
Q 014240 37 LLDEALDALYE-KRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIK 89 (428)
Q Consensus 37 ~l~~~id~l~e-Kr~stR~~aL~~l~~al~~~~--~~~fi~~~~~TL~~~~~~sik 89 (428)
.|.-.++-|.+ +....|.-||+.|.++|++-. +.++.+--..+++++-..+-+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~ 385 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQD 385 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCch
Confidence 45556666777 667779999999999998643 445566556666665555554
No 99
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=37.14 E-value=4.8e+02 Score=26.81 Aligned_cols=178 Identities=20% Similarity=0.236 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHhhh---hhhhhhhhHhHHHHHHHhhhcC----CCHHHH---HHHHHHHhHhee------ecCCCC
Q 014240 51 STREKALSSIIEAFNNTL---QHQFVEKKFATLLHQCLSSIKR----GSSREI---ALASHAIGLLAL------TVGYGE 114 (428)
Q Consensus 51 stR~~aL~~l~~al~~~~---~~~fi~~~~~TL~~~~~~sikk----g~~~E~---~lA~~~l~Ll~l------~lg~~~ 114 (428)
+.|..|...|.++|...- -.+-+.++...++..+.+-+.. |.+... .-|+++++.+.- ++.. +
T Consensus 8 ~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~-d 86 (372)
T PF12231_consen 8 SSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD-D 86 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh-H
Confidence 347777777777776432 3344555666666666665543 333233 345555554431 2221 1
Q ss_pred chHHHHHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHH
Q 014240 115 NSREILEESVAPISQALKSGFDS-SKIASLLECLAVITFVGGN-DPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (428)
Q Consensus 115 ~~eei~~~~~~~L~~~l~d~s~~-~~r~~~~~aLai~~fv~~~-d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~A 192 (428)
...-++ ......+.+++.+ .....++.+|+...|=..- ..+.+...+..+..+-.+ -++..++.-
T Consensus 87 ~~~~~i----~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~---------~~s~si~~e 153 (372)
T PF12231_consen 87 FASFII----DHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNR---------FPSKSIISE 153 (372)
T ss_pred HHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhcc---------CCchhHHHH
Confidence 111122 2333344444444 4455566677766652211 122233333444433322 144579999
Q ss_pred HHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 193 AL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
+|.+.--|+...|...+... ..-+|-+...+=+....+|.+ +++++.|+.
T Consensus 154 rL~i~~~ll~q~p~~M~~~~--~~W~~~l~~~l~~~~k~ir~~---a~~l~~~~~ 203 (372)
T PF12231_consen 154 RLNIYKRLLSQFPQQMIKHA--DIWFPILFPDLLSSAKDIRTK---AISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcchHHHHH---HHHHHHHHH
Confidence 99999999999888766532 223455555555678888887 466666654
No 100
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=36.77 E-value=3.4e+02 Score=28.55 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
.+|.+..+++.+-+. .- .+..+.|..+|++.|..||.+|-.+|+-+
T Consensus 129 ~~p~vR~aal~al~~--------r~-----~~~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 129 SEPPGRAIGLAALGA--------HR-----HDPGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred CChHHHHHHHHHHHh--------hc-----cChHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 566777788866665 10 13457888899999999999999999866
No 101
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.74 E-value=3.4e+02 Score=29.42 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=70.0
Q ss_pred HHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHhccCCCCccccCCCCHHHHHHHHHH
Q 014240 119 ILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQ--IMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (428)
Q Consensus 119 i~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~--~l~~i~~~~~g~~~~a~~~~~~l~~AAL~a 196 (428)
...+++-.|..-..|+++ ..|..|+.+|+-+... -++.+ .++. .+..||..-+. ..+..|+.-|+.+
T Consensus 255 lL~s~~~~la~ka~dp~a-~~r~~a~r~L~~~as~---~P~kv-~th~~~~ldaii~gL~D------~~~~~V~leam~~ 323 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSA-KSRGMACRGLGNTASG---APDKV-RTHKTTQLDAIIRGLYD------DLNEEVQLEAMKC 323 (533)
T ss_pred cHHHHHHHHHHhccCchh-HHHHHHHHHHHHHhcc---CcHHH-HHhHHHHHHHHHHHHhc------CCccHHHHHHHHH
Confidence 344444445444445444 5567777888765544 24333 2332 23344433111 1235788889999
Q ss_pred HHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 197 W~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
-..++-...++.+.+ ..-...-.+..+.++.+..+|.||=-...-+-
T Consensus 324 Lt~v~~~~~~~~l~~-~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~ 370 (533)
T KOG2032|consen 324 LTMVLEKASNDDLES-YLLNIALRLRTLFDSEDDKMRAAAFVLFGALA 370 (533)
T ss_pred HHHHHHhhhhcchhh-hchhHHHHHHHHHHhcChhhhhhHHHHHHHHH
Confidence 888888887776653 33344566888999999999999976655554
No 102
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=36.72 E-value=2.8e+02 Score=24.63 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=34.0
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHH-HhhhHHHHHHhh
Q 014240 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREIL-EESVAPISQALK 132 (428)
Q Consensus 82 ~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~-~~~~~~L~~~l~ 132 (428)
..+.+-|+.+++.++.+|+.++-.++-..|..-. .+|. +++..-|.+++.
T Consensus 41 rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh-~evas~~Fl~el~kl~~ 91 (139)
T cd03567 41 RLLAHKIQSPQEKEALQALTVLEACMKNCGERFH-SEVGKFRFLNELIKLVS 91 (139)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHH-HHHHhHHHHHHHHHHhc
Confidence 3455667778899999999999998888885321 2222 345556666665
No 103
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=36.25 E-value=3.5e+02 Score=25.01 Aligned_cols=148 Identities=17% Similarity=0.158 Sum_probs=70.4
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHH
Q 014240 40 EALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREI 119 (428)
Q Consensus 40 ~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei 119 (428)
.++..+.+-|++.-..|+.-+..... .+..+ ++.....++..+++.+..++.-=+..|..++.-++-..+.. ..+
T Consensus 57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~-~l~~~-~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~ 131 (228)
T PF12348_consen 57 AIIKQLSDLRSKVSKTACQLLSDLAR-QLGSH-FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI 131 (228)
T ss_dssp HHHH-S-HH---HHHHHHHHHHHHHH-HHGGG-GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH-HHhHh-HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH
Confidence 45567778888876666654443332 22222 44446777777777775554222344555555555544410 122
Q ss_pred HHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHH------HHHHHHHHHHhccCCCCccccCCCCHHHHHHH
Q 014240 120 LEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEET------ERTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (428)
Q Consensus 120 ~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~------~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AA 193 (428)
+.+.+.....+ -++..|..|+.+|..+.--.+.+...+ ....+.+-..+. .+++.|-.+|
T Consensus 132 ---~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~----------D~~~~VR~~A 197 (228)
T PF12348_consen 132 ---LLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS----------DADPEVREAA 197 (228)
T ss_dssp ---HHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT----------SS-HHHHHHH
T ss_pred ---HHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC----------CCCHHHHHHH
Confidence 13444443333 346778888877765544444111211 222223322221 3678999999
Q ss_pred HHHHHHhHhcCCC
Q 014240 194 VSAWSFLLTTMDG 206 (428)
Q Consensus 194 L~aW~lLlT~~~~ 206 (428)
-.+|.-+....|.
T Consensus 198 r~~~~~l~~~~~~ 210 (228)
T PF12348_consen 198 RECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCH
Confidence 9999999766554
No 104
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=35.26 E-value=4.5e+02 Score=25.94 Aligned_cols=164 Identities=21% Similarity=0.206 Sum_probs=81.9
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchH
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~e 117 (428)
.+..+..+..+....|..+...+... .-.+.+..+...+.-....-+..|+.+++- +|
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~------------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~----~~------ 102 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGEL------------GSEEAVPLLRELLSDEDPRVRDAAADALGE----LG------ 102 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhh------------chHHHHHHHHHHhcCCCHHHHHHHHHHHHc----cC------
Confidence 45555566666555566655432211 113333444444533444444455442221 22
Q ss_pred HHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCH--HHHHHHHH
Q 014240 118 EILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSA--PIITAMVS 195 (428)
Q Consensus 118 ei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~--~l~~AAL~ 195 (428)
.+...|+|...+....+..+|..|+.+|+-+- +...+...++.+-+-.. +. ....-+.+ .+..+|+.
T Consensus 103 --~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~-----~~~a~~~l~~~l~~~~~---~~-a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 --DPEAVPPLVELLENDENEGVRAAAARALGKLG-----DERALDPLLEALQDEDS---GS-AAAALDAALLDVRAAAAE 171 (335)
T ss_pred --ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC-----chhhhHHHHHHhccchh---hh-hhhhccchHHHHHHHHHH
Confidence 23356666666666566688888888886432 22223333333222110 00 00000000 22233332
Q ss_pred HHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 196 aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
+-+.+- . ....+.+..+|...+..||-+|..+++-+..-
T Consensus 172 ~l~~~~----~--------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 172 ALGELG----D--------PEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHcC----C--------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 222111 1 24568888999999999999999999887543
No 105
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=34.23 E-value=85 Score=32.50 Aligned_cols=56 Identities=21% Similarity=0.150 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHH
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiA 241 (428)
+++.+.+-||.+.|-+.|--+...-. -+--..+++|..+|++.--++|.-|.=+|.
T Consensus 297 ~sa~iqtPalR~vGNIVTG~D~QTqv-iI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 297 ESAKIQTPALRSVGNIVTGSDDQTQV-IINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred ccccccCHHHHhhcCeeecCccceeh-heecccHHHHHHHhcChhhhhhhhhheeec
Confidence 56678888999998888766554321 111256899999999998899987654443
No 106
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=32.28 E-value=3.1e+02 Score=23.14 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHH
Q 014240 162 ERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240 (428)
Q Consensus 162 ~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEai 240 (428)
...++++..++....+ ...+.+..++|....-.++.++...+.+ ...++.+..+|.+++. |.+|-|+|
T Consensus 81 ~~i~~~l~~~l~~~~~------~~~~~~~~~~L~~l~s~i~~~~~~~i~~---~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSS------EANEELVKAALKCLKSWISWIPIELIIN---SNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCH------CCHHHHHHHHHHHHHHHTTTS-HHHHHS---SSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc------ccHHHHHHHHHHHHHHHHHhCCHHHhcc---HHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 3445555555544211 0136788888888888887666655443 2467888888865555 88998875
No 107
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.00 E-value=2.1e+02 Score=31.76 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=53.6
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccc
Q 014240 131 LKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLD 210 (428)
Q Consensus 131 l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~ 210 (428)
+.|+.+..+|++ ..|| .|+||.|.+-+..+.+.+-+ + .++.|.++ .|.+|-+.......
T Consensus 561 vsD~nDDVrRAA-ViAl---Gfvc~~D~~~lv~tvelLs~---s----------hN~hVR~g--~AvaLGiacag~G~-- 619 (926)
T COG5116 561 VSDGNDDVRRAA-VIAL---GFVCCDDRDLLVGTVELLSE---S----------HNFHVRAG--VAVALGIACAGTGD-- 619 (926)
T ss_pred cccCchHHHHHH-HHhe---eeeEecCcchhhHHHHHhhh---c----------cchhhhhh--hHHHhhhhhcCCcc--
Confidence 455555555554 3355 57888898887777776543 1 22333332 33333333322221
Q ss_pred hhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 211 SKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 211 ~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
+.++..|..|.....-=||-+|--++++|.
T Consensus 620 ----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 620 ----KVATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred ----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 255667777777888889999998888885
No 108
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=31.99 E-value=6.5e+02 Score=26.77 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHhhh--hhhhhhh--hHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhH
Q 014240 50 GSTREKALSSIIEAFNNTL--QHQFVEK--KFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVA 125 (428)
Q Consensus 50 ~stR~~aL~~l~~al~~~~--~~~fi~~--~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~ 125 (428)
..+.+-.|.-|.++++... ..-|.+. ........+++.+.++..-=+..|+++++++.. .|...........+.+
T Consensus 68 ~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~-~~~~~~~~~~l~~~~~ 146 (429)
T cd00256 68 DDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC-FGLAKMEGSDLDYYFN 146 (429)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh-cCccccchhHHHHHHH
Confidence 3445555555555554321 1122221 112345566667765544346788888888753 3332111223333555
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHH
Q 014240 126 PISQALKSGFDSSKIASLLECLAVI 150 (428)
Q Consensus 126 ~L~~~l~d~s~~~~r~~~~~aLai~ 150 (428)
.|...++.+..+.....|+.||+.+
T Consensus 147 ~l~~~l~~~~~~~~~~~~v~~L~~L 171 (429)
T cd00256 147 WLKEQLNNITNNDYVQTAARCLQML 171 (429)
T ss_pred HHHHHhhccCCcchHHHHHHHHHHH
Confidence 6776666555555556677788765
No 109
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.88 E-value=8.8e+02 Score=28.28 Aligned_cols=108 Identities=19% Similarity=0.107 Sum_probs=61.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCC-Ch--HHHHHHHHHHHHHHHHcCCC
Q 014240 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGF-DS--SKIASLLECLAVITFVGGND 157 (428)
Q Consensus 81 ~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s-~~--~~r~~~~~aLai~~fv~~~d 157 (428)
.+.-...-||...+++..--.++.=++--.| |++..-..+|......+. ++ .-|++.+..||.||-+.+..
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G------el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALG------ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 3333444444434444433355555565566 344444445555544442 33 45999999999999775533
Q ss_pred h-HHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhc
Q 014240 158 P-EETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTT 203 (428)
Q Consensus 158 ~-~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~ 203 (428)
. +..-++...+..+..+ + +++.+.=||+.--..||-.
T Consensus 882 vsd~~~ev~~~Il~l~~~-d--------~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 882 VSDFFHEVLQLILSLETT-D--------GSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hhHHHHHHHHHHHHHHcc-C--------CchhhHHHHHHHHHHHHhc
Confidence 2 2455666666666666 4 4445666676666666543
No 110
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=31.68 E-value=5.2e+02 Score=25.53 Aligned_cols=177 Identities=19% Similarity=0.265 Sum_probs=95.2
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCC---H----------HHHHHHHH
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS---S----------REIALASH 101 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~---~----------~E~~lA~~ 101 (428)
|..+..++|.|+.-....=..||..+...|.+- ..++++-. . .+..-...
T Consensus 2 E~~ls~~~d~L~s~~~~~ir~GLrq~~~lL~~l-----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 64 (257)
T PF08045_consen 2 ESLLSLAFDNLYSEDTPKIRKGLRQLEGLLAQL-----------------CLSIRQSRNSSKRSSAASRKGLELFRDDPA 64 (257)
T ss_pred chHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----------------hhccccccccccchhhccchhhhhcccchh
Confidence 566888899998777766566776665554432 22221110 0 00011112
Q ss_pred HHhHheeecCCCCchHHHHHhhhHHHHHHhhcCC--------ChHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHH
Q 014240 102 AIGLLALTVGYGENSREILEESVAPISQALKSGF--------DSSKIASLLECLAVITFVGGNDP--EETERTMQIMWQI 171 (428)
Q Consensus 102 ~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s--------~~~~r~~~~~aLai~~fv~~~d~--~~~~~~m~~l~~i 171 (428)
+--+..+|.+-. ..+...+.+.+..++...+ .....+.|+.-|--||.+--..- -.-...|+.+..+
T Consensus 65 ~~eF~~LQ~~Fe---~Nl~~~Lv~~l~~l~~~~~~~~~~~~~~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~L 141 (257)
T PF08045_consen 65 LREFQKLQEGFE---WNLASRLVSWLDRLLGRGSHIDGDSPSNDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDL 141 (257)
T ss_pred HHHHHHhHHHhh---cchhhhhHHHHHHHHhhcccccCcccchhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHH
Confidence 233444444431 1222344455555443322 11334555555656666633322 1234678888888
Q ss_pred hccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhh--HHHHHhhhc--CCChHHHHHHHHHHHHH
Q 014240 172 VHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQS--ISYFSTLLD--KDDRSIRIAAGEALALI 243 (428)
Q Consensus 172 ~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~--l~~L~~lL~--s~d~~VRiAAGEaiALl 243 (428)
+.+ ...+.+.+|+|.+-..+|-.-|... ...++. +..+..++. +.+.+||+-.+|.+-+.
T Consensus 142 L~~---------~~~~~i~~a~L~tLv~iLld~p~N~---r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 142 LSP---------SNPPAIQSACLDTLVCILLDSPENQ---RDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred hcc---------CCCchHHHHHHHHHHHHHHcChHHH---HHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHH
Confidence 855 2446788888887666554433322 222222 677778875 44799999999998765
No 111
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.46 E-value=2.5e+02 Score=28.65 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=17.2
Q ss_pred HHHHHHHh-cccchHHHHHHHHHHHH
Q 014240 38 LDEALDAL-YEKRGSTREKALSSIIE 62 (428)
Q Consensus 38 l~~~id~l-~eKr~stR~~aL~~l~~ 62 (428)
++..|..| +|-...+|.+||+++.+
T Consensus 199 F~kvisal~dEs~~~~r~aAl~sLr~ 224 (450)
T COG5095 199 FDKVISALLDESDEQTRDAALESLRN 224 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45556555 56667789999988743
No 112
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=31.32 E-value=7.5e+02 Score=27.28 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=50.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHH
Q 014240 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEE 160 (428)
Q Consensus 81 ~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~ 160 (428)
...++.+. ||+.++..||++.|+-..=..+.- +++-++ .+..++ +..++..|..++..|-- +|-+.++-
T Consensus 25 y~~il~~~-kg~~k~K~Laaq~I~kffk~FP~l--~~~Ai~----a~~DLc-EDed~~iR~~aik~lp~---~ck~~~~~ 93 (556)
T PF05918_consen 25 YKEILDGV-KGSPKEKRLAAQFIPKFFKHFPDL--QEEAIN----AQLDLC-EDEDVQIRKQAIKGLPQ---LCKDNPEH 93 (556)
T ss_dssp HHHHHHGG-GS-HHHHHHHHHHHHHHHCC-GGG--HHHHHH----HHHHHH-T-SSHHHHHHHHHHGGG---G--T--T-
T ss_pred HHHHHHHc-cCCHHHHHHHHHHHHHHHhhChhh--HHHHHH----HHHHHH-hcccHHHHHHHHHhHHH---HHHhHHHH
Confidence 33456666 588999999999999998877742 334333 343443 44567788888888744 34445666
Q ss_pred HHHHHHHHHHHhcc
Q 014240 161 TERTMQIMWQIVHP 174 (428)
Q Consensus 161 ~~~~m~~l~~i~~~ 174 (428)
+....++|-+++.+
T Consensus 94 v~kvaDvL~QlL~t 107 (556)
T PF05918_consen 94 VSKVADVLVQLLQT 107 (556)
T ss_dssp HHHHHHHHHHHTT-
T ss_pred HhHHHHHHHHHHhc
Confidence 77777887777754
No 113
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=31.15 E-value=9.7e+02 Score=28.56 Aligned_cols=153 Identities=17% Similarity=0.094 Sum_probs=80.3
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCC-HHHHHHHHHHHhHheeecCCCCch
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~-~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
+...|..+..+-...|.+|...+.++.+..++.+.-+. ..++...+..+.+.+ ..|+..-.-+++.++-
T Consensus 678 ~~~ll~~~l~~~n~i~~~av~av~~l~s~y~~~d~~~~--~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~-------- 747 (1133)
T KOG1943|consen 678 WQMLLAQNLTLPNQIRDAAVSAVSDLVSTYVKADEGEE--APLITRYLSRLTKCSEERIRRGLILALGVLPS-------- 747 (1133)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCchhh--hHHHHHHHHHhcCchHHHHHHHHHHHHccCcH--------
Confidence 44555554444447899999888887776665442221 136666666666664 5554444444444331
Q ss_pred HHHHHhhhHHHHHHhhc--CC--ChHHHHHHHHHHHHHHHH-c-CCChHHHHHHHHH----HHHHhccCCCCccccCCCC
Q 014240 117 REILEESVAPISQALKS--GF--DSSKIASLLECLAVITFV-G-GNDPEETERTMQI----MWQIVHPKLGSNVVATRPS 186 (428)
Q Consensus 117 eei~~~~~~~L~~~l~d--~s--~~~~r~~~~~aLai~~fv-~-~~d~~~~~~~m~~----l~~i~~~~~g~~~~a~~~~ 186 (428)
+-+--.....+.+.+.+ ++ .+..|...+-||+=++-. + ..-.+.+++.++. +.++....-|. ..
T Consensus 748 ~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGD------VG 821 (1133)
T KOG1943|consen 748 ELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGD------VG 821 (1133)
T ss_pred HhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCcc------HH
Confidence 12212222233333332 22 356777777777733322 2 1112234444544 44433221121 22
Q ss_pred HHHHHHHHHHHHHhHhcCCC
Q 014240 187 APIITAMVSAWSFLLTTMDG 206 (428)
Q Consensus 187 ~~l~~AAL~aW~lLlT~~~~ 206 (428)
.-|--||+.|-..++.+++.
T Consensus 822 swVReaAm~al~~~~~~l~~ 841 (1133)
T KOG1943|consen 822 SWVREAAMKALSSLLDTLSS 841 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhcC
Confidence 36788999999988888875
No 114
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=30.69 E-value=5.2e+02 Score=29.63 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=76.4
Q ss_pred HHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCC---hHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhc
Q 014240 97 ALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFD---SSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVH 173 (428)
Q Consensus 97 ~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~---~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~ 173 (428)
......+.+++.|+| .+++++.+..+ +..+-. ...|.+|+..|..++..-|..-.-....++++-.
T Consensus 497 ~ail~~ip~la~q~~-----~~~~~~~~~~l---~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~--- 565 (759)
T KOG0211|consen 497 LAILEYIPQLALQLG-----VEFFDEKLAEL---LRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAM--- 565 (759)
T ss_pred HHHHHHHHHHHHhhh-----hHHhhHHHHHH---HHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHH---
Confidence 455688999999999 46777664443 333322 2678888999988887766333222233343332
Q ss_pred cCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 174 PKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 174 ~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
++. ++--.--+-+.+-.+|+-.+... +. .+..+|.+..+......+||+-|...+..+-=.
T Consensus 566 --~~q------~~y~~R~t~l~si~~la~v~g~e-i~---~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 566 --DLQ------DNYLVRMTTLFSIHELAEVLGQE-IT---CEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred --hcC------cccchhhHHHHHHHHHHHHhccH-HH---HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 221 11122233334444555554443 22 246788888888888899999988877766433
No 115
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.30 E-value=7.2e+02 Score=28.73 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHhcCCC
Q 014240 278 LNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYC 317 (428)
Q Consensus 278 ~~~l~~La~d~s~K~~aKkDrk~qRs~FRdIl~~iE~g~~ 317 (428)
+++|..|++++ ....+||+...||...+.
T Consensus 378 leiLs~La~es-----------ni~~ILrE~q~YI~s~d~ 406 (968)
T KOG1060|consen 378 LEILSNLANES-----------NISEILRELQTYIKSSDR 406 (968)
T ss_pred HHHHHHHhhhc-----------cHHHHHHHHHHHHhcCch
Confidence 68889999864 347789999999987664
No 116
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=29.39 E-value=1.5e+02 Score=25.78 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
.++.+++-|++=-|-+.-..|.+...-+ --..-..+.+|+.++|.+||--|=.++--+
T Consensus 56 ~d~~~laVac~Dig~~vr~~p~gr~ii~-~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRHYPNGRNIIE-KLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGHHHHH-HHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred CCcceeehhhcchHHHHHHChhHHHHHH-hcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4677888899999999988877642211 023457889999999999999888777554
No 117
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.34 E-value=3.7e+02 Score=33.08 Aligned_cols=112 Identities=20% Similarity=0.163 Sum_probs=74.5
Q ss_pred hhhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHh---hhcCCCHHH-HHHHHHHHhHheee
Q 014240 34 KDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLS---SIKRGSSRE-IALASHAIGLLALT 109 (428)
Q Consensus 34 ~~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~---sikkg~~~E-~~lA~~~l~Ll~l~ 109 (428)
..+.+++.+++|+.|==-.||++=-++.+.+..+...++.++ ...+-..+.| -| |.+-+| ...|+++++=+|+.
T Consensus 1037 ~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~-lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr 1114 (1702)
T KOG0915|consen 1037 LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEK-LPELWEAAFRVMDDI-KESVREAADKAARALSKLCVR 1114 (1702)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 366899999999999777899988888899988876665543 2333333333 23 233344 45888999888887
Q ss_pred cCCC---CchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHH
Q 014240 110 VGYG---ENSREILEESVAPISQALKSGFDSSKIASLLECL 147 (428)
Q Consensus 110 lg~~---~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aL 147 (428)
+++- ..+.++.+.++|.|..-=--.....+|..|+..+
T Consensus 1115 ~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl 1155 (1702)
T KOG0915|consen 1115 ICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTL 1155 (1702)
T ss_pred hcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHH
Confidence 7764 3478999999998743111122236676666554
No 118
>PRK00321 rdgC recombination associated protein; Reviewed
Probab=27.64 E-value=3.1e+02 Score=27.65 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHhcCCCCc---eeEEE--cCeeEEEchhHHHHH---HHHHH
Q 014240 273 LKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPE---TSTKI--GGESLKTSNWSQLIQ---LNFLK 344 (428)
Q Consensus 273 ~~~~l~~~l~~La~d~s~K~~aKkDrk~qRs~FRdIl~~iE~g~~Pe---~~ik~--g~e~L~idsW~~~~q---l~~lr 344 (428)
.++++-++++++... .+++.+||.|+++|. +|...+=---+|. +.+=+ ..+.|.||+=+.... +.+||
T Consensus 79 Vk~~l~erv~~ie~~-~gr~v~rkEk~eiKe---~v~~~LLprAf~k~~~~~~~id~~~g~l~VdasS~k~aE~~l~lLr 154 (303)
T PRK00321 79 IKQALEEKVAEIEAE-EGRKLGKKEKDELKE---EVTHELLPRAFSRRSQTFAWIDPVNGLIVVDAASAKKAEDVLALLR 154 (303)
T ss_pred HHHHHHHHHHHHHHh-hCCCCCHHHHHHHHH---HHHHHHHhhcCCccceEEEEEECCCCEEEEeCCCHHHHHHHHHHHH
Confidence 467788888888765 578899999999885 4444444333443 22223 478999998887765 77888
Q ss_pred HHhhh
Q 014240 345 HFLGG 349 (428)
Q Consensus 345 ~~Lg~ 349 (428)
..||+
T Consensus 155 kslgs 159 (303)
T PRK00321 155 KSLGS 159 (303)
T ss_pred HhcCC
Confidence 88864
No 119
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=27.02 E-value=3.5e+02 Score=22.73 Aligned_cols=70 Identities=29% Similarity=0.323 Sum_probs=42.5
Q ss_pred hHhHHHHHHHhhhcCCCHHHH-HHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 014240 76 KFATLLHQCLSSIKRGSSREI-ALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVIT 151 (428)
Q Consensus 76 ~~~TL~~~~~~sikkg~~~E~-~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~ 151 (428)
....++..+.++++.++..|. ..+.-+++.|+....- +.++.+. .+..++...........++.||+.++
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L---~~~~l~~---l~~~i~~~~~~~~~~~~~l~~L~~l~ 73 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL---SDEVLNA---LMESILKNWTQETVQRQALICLIVLC 73 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC---cHHHHHH---HHHHHHhccccchhHHHHHHHHHHHH
Confidence 346788889999986765674 5666677777766653 2355443 34555666655443334555665444
No 120
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=26.81 E-value=6.1e+02 Score=24.84 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=31.5
Q ss_pred hhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 212 KKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 212 ~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
....-++|.|.+=|+|+...++.-+=++|..+++.+
T Consensus 204 ~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 204 LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 344578999999999999999999999999999875
No 121
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=26.57 E-value=3.8e+02 Score=22.39 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=57.6
Q ss_pred hhhhhhhHhHHHHHHHhhhcC--C--CHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCC-hHHHHHHH
Q 014240 70 HQFVEKKFATLLHQCLSSIKR--G--SSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFD-SSKIASLL 144 (428)
Q Consensus 70 ~~fi~~~~~TL~~~~~~sikk--g--~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~-~~~r~~~~ 144 (428)
.+|++++..-++..+-..+.. | +-.|+..+.+.++-+.= ++. .-.....|.+...++..-+ +..+..|+
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~-----~~i~~~~pQI~a~L~sal~~~~l~~~al 75 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGG-----SHISSARPQIMACLQSALEIPELREEAL 75 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhH-----HHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 356666665555555444433 4 37889999999998877 553 2344577777777776533 35555555
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 014240 145 ECLAVITFVGGNDPEETERTMQIMWQ 170 (428)
Q Consensus 145 ~aLai~~fv~~~d~~~~~~~m~~l~~ 170 (428)
.|. .+|+-.-+++++...++-+..
T Consensus 76 ~~W--~~fi~~L~~~~l~~ll~~~~~ 99 (107)
T PF08064_consen 76 SCW--NCFIKTLDEEDLGPLLDQIFA 99 (107)
T ss_pred HHH--HHHHHHCCHHHHHHHHHHHHH
Confidence 554 456666677777777765443
No 122
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.37 E-value=1.1e+03 Score=27.45 Aligned_cols=141 Identities=8% Similarity=0.123 Sum_probs=96.1
Q ss_pred HhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 014240 77 FATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGN 156 (428)
Q Consensus 77 ~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~ 156 (428)
..-+...+++-++ +..+=+..-++.|..+++... .+ +.|+++.-.--++|+.. .++.=|-|++-+...
T Consensus 320 ~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~------~l---F~P~lKsFfv~ssDp~~--vk~lKleiLs~La~e 387 (968)
T KOG1060|consen 320 VTKIAKALVRLLR-SNREVQYVVLQNIATISIKRP------TL---FEPHLKSFFVRSSDPTQ--VKILKLEILSNLANE 387 (968)
T ss_pred HHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcch------hh---hhhhhhceEeecCCHHH--HHHHHHHHHHHHhhh
Confidence 3445667777664 443446677788888888776 44 46888876666666632 134556666666432
Q ss_pred ChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHH
Q 014240 157 DPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAA 236 (428)
Q Consensus 157 d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAA 236 (428)
..+...+.=|..+|.+. +. .++++|++|-|.-++.+-.+. ..+|.-|+.+|.+.|..|-.+|
T Consensus 388 --sni~~ILrE~q~YI~s~---------d~-~faa~aV~AiGrCA~~~~sv~------~tCL~gLv~Llsshde~Vv~ea 449 (968)
T KOG1060|consen 388 --SNISEILRELQTYIKSS---------DR-SFAAAAVKAIGRCASRIGSVT------DTCLNGLVQLLSSHDELVVAEA 449 (968)
T ss_pred --ccHHHHHHHHHHHHhcC---------ch-hHHHHHHHHHHHHHHhhCchh------hHHHHHHHHHHhcccchhHHHH
Confidence 23445566677777652 33 599999999999888765542 4788999999999998888888
Q ss_pred HHHHHHHHHhc
Q 014240 237 GEALALILETG 247 (428)
Q Consensus 237 GEaiALl~E~~ 247 (428)
--.|=.+.+..
T Consensus 450 V~vIk~Llq~~ 460 (968)
T KOG1060|consen 450 VVVIKRLLQKD 460 (968)
T ss_pred HHHHHHHHhhC
Confidence 77777776663
No 123
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=25.10 E-value=1.2e+03 Score=27.52 Aligned_cols=161 Identities=14% Similarity=0.048 Sum_probs=101.6
Q ss_pred HhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 014240 77 FATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGN 156 (428)
Q Consensus 77 ~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~ 156 (428)
+.++...+.+.++...+.+......+++.+.-.++-. .----+..++|.|.+.+ +-.+..+|.+..+++-+..-....
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~-vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ-VLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH-hhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccc
Confidence 4566666666665344556666556555554444421 00112455667765543 345667788888888887777664
Q ss_pred ChH-HHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHH
Q 014240 157 DPE-ETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIA 235 (428)
Q Consensus 157 d~~-~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiA 235 (428)
=.. .+....-.+..+..+ ..+ ....|.-+||++-.-|.+.+|...+.+ .-+..+..|...|+..-+-||.-
T Consensus 943 L~t~~~~Tlvp~lLsls~~--~~n-----~~~~VR~~ALqcL~aL~~~~P~~~l~~-fr~~Vl~al~k~LdDkKRlVR~e 1014 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSD--NDN-----NMMVVREDALQCLNALTRRLPTKSLLS-FRPLVLRALIKILDDKKRLVRKE 1014 (1030)
T ss_pred cchHHHhHHHHHHHhcCCC--CCc-----chhHHHHHHHHHHHHHhccCCCccccc-ccHHHHHHhhhccCcHHHHHHHH
Confidence 332 232333334433322 111 124788899999999999899877763 34677888999999999999999
Q ss_pred HHHHHHHHHHhc
Q 014240 236 AGEALALILETG 247 (428)
Q Consensus 236 AGEaiALl~E~~ 247 (428)
|-.+=---|+++
T Consensus 1015 Av~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 1015 AVDTRQNWYMLG 1026 (1030)
T ss_pred HHHHhhhhhhcc
Confidence 988766666665
No 124
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=24.60 E-value=1e+03 Score=26.68 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCCceeEEE----cCeeEEEchhHHHHHHHHHHHHh
Q 014240 305 FKDILEFLEYGYCPETSTKI----GGESLKTSNWSQLIQLNFLKHFL 347 (428)
Q Consensus 305 FRdIl~~iE~g~~Pe~~ik~----g~e~L~idsW~~~~ql~~lr~~L 347 (428)
......|||+-+.|+..|+| |.|.=.-.+=.+++|+-.-|-+|
T Consensus 452 Le~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL 498 (898)
T COG5240 452 LEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLIL 498 (898)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH
Confidence 34566677777777766665 44444444445666666656555
No 125
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=24.37 E-value=1.9e+02 Score=26.02 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhcCCCccchhhHHH-HHHHHHHHHHHhcCCCCce
Q 014240 274 KGKILNQVRNLSVEAGGKGSAKKDLTSQ-RNLFKDILEFLEYGYCPET 320 (428)
Q Consensus 274 ~~~l~~~l~~La~d~s~K~~aKkDrk~q-Rs~FRdIl~~iE~g~~Pe~ 320 (428)
++.|.++|..|.++ .+...|-.++-- -.+=-+|+.||++|..|..
T Consensus 43 q~~L~qrl~tLv~~--L~~l~~~s~k~n~i~IPleVl~yIddGrNPd~ 88 (147)
T KOG3046|consen 43 QDALNQRLNTLVRG--LQDLDKLSSKLNDIQIPLEVLEYIDDGRNPDL 88 (147)
T ss_pred HHHHHHHHHHHHHH--hhhhHHHHHhhccccCcHHHHHHHhcCCCccH
Confidence 46777778887774 333332211110 1123489999999999975
No 126
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.36 E-value=2.5e+02 Score=24.96 Aligned_cols=65 Identities=8% Similarity=0.032 Sum_probs=41.6
Q ss_pred HHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 014240 84 CLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLA 148 (428)
Q Consensus 84 ~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLa 148 (428)
+.+-|+.+.+..+.+|+.++-.++-..|..-..+-.-+++..-|.+++.......++..++.-+-
T Consensus 42 l~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~ 106 (144)
T cd03568 42 IMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK 106 (144)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 33445567788899999999998888885322222223566667778887666666555544433
No 127
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=1.2e+03 Score=26.85 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhH----hHHHHHHHhhhcCCCHHHHHHHHHHHhHheeec
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKF----ATLLHQCLSSIKRGSSREIALASHAIGLLALTV 110 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~----~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~l 110 (428)
++.++..=+.|+.-++-+-++|=-++--.+....-.+-+++-+ +|=-+-+.|++ ++++-++-.
T Consensus 448 ~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl-------------~vGiaL~~y 514 (929)
T KOG2062|consen 448 EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGL-------------AVGIALVVY 514 (929)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHH-------------HHhHHHHHh
Q ss_pred CCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHH
Q 014240 111 GYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPII 190 (428)
Q Consensus 111 g~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~ 190 (428)
| .+| +.-|.++.++.|. ++-.|..-+.++|+ +|+|......+...+-+... .++..|.
T Consensus 515 g----rqe---~Ad~lI~el~~dk-dpilR~~Gm~t~al-Ay~GTgnnkair~lLh~aVs-------------D~nDDVr 572 (929)
T KOG2062|consen 515 G----RQE---DADPLIKELLRDK-DPILRYGGMYTLAL-AYVGTGNNKAIRRLLHVAVS-------------DVNDDVR 572 (929)
T ss_pred h----hhh---hhHHHHHHHhcCC-chhhhhhhHHHHHH-HHhccCchhhHHHhhccccc-------------ccchHHH
Q ss_pred HHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 191 TAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 191 ~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
-||+-|-||++..=|. .....+.-|-+|=+..||-.|.-++++.+
T Consensus 573 RaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaC 617 (929)
T KOG2062|consen 573 RAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIAC 617 (929)
T ss_pred HHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhh
No 128
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.58 E-value=6.1e+02 Score=29.38 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=24.6
Q ss_pred CccchhhHHhhHHHHHhhhcCCChHHHHHHHHHH
Q 014240 207 CSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240 (428)
Q Consensus 207 ~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEai 240 (428)
..+.+..+-.++|.+.+.|+++..-|..=|+-+|
T Consensus 489 ~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~ai 522 (960)
T KOG1992|consen 489 NQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAI 522 (960)
T ss_pred ccCChHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 3445556667889999999998877777665544
No 129
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=22.48 E-value=66 Score=27.56 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHhcCCCCccchhhHH-hhHHHHHhhhcCCChHHHHHH
Q 014240 189 IITAMVSAWSFLLTTMDGCSLDSKKWQ-QSISYFSTLLDKDDRSIRIAA 236 (428)
Q Consensus 189 l~~AAL~aW~lLlT~~~~~~~~~~~~~-~~l~~L~~lL~s~d~~VRiAA 236 (428)
=.-.+|..|..|.|. |. +.+.+++ ..++-|..||.+++.+|.+++
T Consensus 62 dLd~~Ik~l~~La~~-P~--LYp~lv~l~~v~sL~~LL~HeN~DIai~v 107 (108)
T PF08216_consen 62 DLDEEIKKLSVLATA-PE--LYPELVELGAVPSLLGLLSHENTDIAIDV 107 (108)
T ss_pred HHHHHHHHHHHccCC-hh--HHHHHHHcCCHHHHHHHHCCCCcceehcc
Confidence 345789999988764 32 2233332 568999999999999988775
No 130
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.43 E-value=3.8e+02 Score=24.67 Aligned_cols=38 Identities=32% Similarity=0.341 Sum_probs=33.2
Q ss_pred hhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhccc
Q 014240 212 KKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSL 249 (428)
Q Consensus 212 ~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~~ 249 (428)
.++|..++.+.++.-+++..||.+|-+.|.++..-|..
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv 41 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLV 41 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC
Confidence 45678888888888899999999999999999988753
No 131
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=22.24 E-value=7.6e+02 Score=24.30 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=54.6
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhH
Q 014240 122 ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLL 201 (428)
Q Consensus 122 ~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLl 201 (428)
...+.+.+.+.+. +...|..++..|+ .-+..+. ...+-.+... .++.+..+|+. -|
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~------~~~~~~a---v~~l~~~l~d----------~~~~vr~~a~~----aL 98 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALG------ELGSEEA---VPLLRELLSD----------EDPRVRDAAAD----AL 98 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHh------hhchHHH---HHHHHHHhcC----------CCHHHHHHHHH----HH
Confidence 3455566666766 6677777766632 2222222 2222222221 34466666666 22
Q ss_pred hcCCCCccchhhHHhhHHHHHhhhc-CCChHHHHHHHHHHHHHHHh
Q 014240 202 TTMDGCSLDSKKWQQSISYFSTLLD-KDDRSIRIAAGEALALILET 246 (428)
Q Consensus 202 T~~~~~~~~~~~~~~~l~~L~~lL~-s~d~~VRiAAGEaiALl~E~ 246 (428)
..+.. ...+|.|..+|+ +.+..||.+|..+|+-+...
T Consensus 99 g~~~~--------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 99 GELGD--------PEAVPPLVELLENDENEGVRAAAARALGKLGDE 136 (335)
T ss_pred HccCC--------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch
Confidence 22221 366788999998 47999999999999887544
No 132
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.43 E-value=1.1e+03 Score=29.37 Aligned_cols=56 Identities=14% Similarity=-0.037 Sum_probs=37.2
Q ss_pred HHHHHHhhhcCCC-HHHHHHHHHHHhHhe--eecCCCCchHHHHHhhhHHHHHHhhcCC
Q 014240 80 LLHQCLSSIKRGS-SREIALASHAIGLLA--LTVGYGENSREILEESVAPISQALKSGF 135 (428)
Q Consensus 80 L~~~~~~sikkg~-~~E~~lA~~~l~Ll~--l~lg~~~~~eei~~~~~~~L~~~l~d~s 135 (428)
++..-++-+++.+ ..||.+|+-+++=+. .-.+...+-++++..+.|-|.+.+..-+
T Consensus 1237 ~l~s~Le~l~~sk~~~~Q~laAEilaG~i~g~k~~~f~e~~~~W~~L~p~L~~~~~~it 1295 (1710)
T KOG1851|consen 1237 ALKSHLELLMASKKENEQLLAAEILAGLIHGSKHWDFEELDKLWNLLNPCLRQFFLNIT 1295 (1710)
T ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555565554 789998888766443 4455555667788888888888766443
No 133
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.04 E-value=5.7e+02 Score=29.17 Aligned_cols=88 Identities=22% Similarity=0.315 Sum_probs=57.9
Q ss_pred hhhHHHHHHHh----cccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeec
Q 014240 35 DTLLDEALDAL----YEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTV 110 (428)
Q Consensus 35 ~~~l~~~id~l----~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~l 110 (428)
.+.+.++.+.| +.|-...|--||++++...++..-++-+..+..++ +.++|-.+ ....-.+++-||-.-+
T Consensus 324 ~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~I----i~sLkter--DvSirrravDLLY~mc 397 (938)
T KOG1077|consen 324 PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTI----INSLKTER--DVSIRRRAVDLLYAMC 397 (938)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHH----HHHhcccc--chHHHHHHHHHHHHHh
Confidence 34566777665 46777789999999999999987777776665554 45565221 2222334444443323
Q ss_pred CCCCchHHHHHhhhHHHHH
Q 014240 111 GYGENSREILEESVAPISQ 129 (428)
Q Consensus 111 g~~~~~eei~~~~~~~L~~ 129 (428)
+ -+++..|.++++..|..
T Consensus 398 D-~~Nak~IV~elLqYL~t 415 (938)
T KOG1077|consen 398 D-VSNAKQIVAELLQYLET 415 (938)
T ss_pred c-hhhHHHHHHHHHHHHhh
Confidence 3 25689999999888855
No 134
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.73 E-value=6.6e+02 Score=29.25 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=43.9
Q ss_pred hhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 014240 71 QFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLA 148 (428)
Q Consensus 71 ~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLa 148 (428)
+-+.+.++-|++.|++++|-+...=+.-++..+|.+|.-+..+ .+ ++|-++.--+..+.+-+.....|-+|+.-+.
T Consensus 839 el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~-vs-d~~~ev~~~Il~l~~~d~s~~vRRaAv~li~ 914 (982)
T KOG4653|consen 839 ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ-VS-DFFHEVLQLILSLETTDGSVLVRRAAVHLLA 914 (982)
T ss_pred cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHHHccCCchhhHHHHHHHHH
Confidence 3344567889999999998443333667777788877544322 12 3555555555555553333444444444443
No 135
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=20.27 E-value=1.3e+03 Score=26.21 Aligned_cols=71 Identities=10% Similarity=0.211 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhh-hcCCChHHHHHHHHH
Q 014240 161 TERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTL-LDKDDRSIRIAAGEA 239 (428)
Q Consensus 161 ~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~l-L~s~d~~VRiAAGEa 239 (428)
.+.++.++..-++ ..+..++..+|+....++..+|-..+. +..+|++..+ +..+++.|+..+--+
T Consensus 387 ~~~IlplL~~S~~----------~~~~~iQ~~~L~~lptv~e~iD~~~vk----~~ilP~l~~l~~~tt~~~vkvn~L~c 452 (700)
T KOG2137|consen 387 KEKILPLLYRSLE----------DSDVQIQELALQILPTVAESIDVPFVK----QAILPRLKNLAFKTTNLYVKVNVLPC 452 (700)
T ss_pred HHHHHHHHHHHhc----------CcchhhHHHHHHhhhHHHHhccHHHHH----HHHHHHhhcchhcccchHHHHHHHHH
Confidence 4456666554332 255689999999999999999955443 4667888876 567788888887777
Q ss_pred HHHHHH
Q 014240 240 LALILE 245 (428)
Q Consensus 240 iALl~E 245 (428)
+|-+.+
T Consensus 453 ~~~l~q 458 (700)
T KOG2137|consen 453 LAGLIQ 458 (700)
T ss_pred HHHHHH
Confidence 777664
No 136
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=20.10 E-value=2.8e+02 Score=22.65 Aligned_cols=51 Identities=8% Similarity=0.012 Sum_probs=35.4
Q ss_pred HHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCCh-HHHHHHHHHHH
Q 014240 96 IALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDS-SKIASLLECLA 148 (428)
Q Consensus 96 ~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~-~~r~~~~~aLa 148 (428)
+..|+++++.+|-..+.. -..+...+...|.+++.|+..+ ...-.++.+|+
T Consensus 23 Rd~AA~lL~~I~~~~~~~--~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~ 74 (92)
T PF07571_consen 23 RDFAASLLAQICRKFSSS--YPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLS 74 (92)
T ss_pred HHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 578999999999998853 2455556666777788887665 45555555543
Done!