Query 014240
Match_columns 428
No_of_seqs 150 out of 224
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:00:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 98.6 6.2E-06 2.1E-10 77.1 20.4 189 40-248 19-208 (242)
2 2qk1_A Protein STU2; STU2P, XM 98.3 2.4E-05 8.2E-10 74.4 16.4 192 40-247 20-222 (249)
3 1b3u_A Protein (protein phosph 97.7 0.0017 5.9E-08 66.8 18.5 185 41-245 169-353 (588)
4 1b3u_A Protein (protein phosph 97.6 0.0018 6.1E-08 66.7 18.0 181 40-244 406-586 (588)
5 4fdd_A Transportin-1; heat rep 97.6 0.0012 4.2E-08 72.4 17.6 194 37-247 257-473 (852)
6 4ffb_C Protein STU2; tubulin f 97.6 0.0013 4.3E-08 62.8 15.5 191 41-245 14-212 (278)
7 4db8_A Armadillo-repeat protei 97.6 0.0019 6.6E-08 59.4 15.8 189 35-244 11-208 (252)
8 2jdq_A Importin alpha-1 subuni 97.5 0.0022 7.6E-08 63.8 16.9 191 38-245 22-221 (450)
9 1ibr_B P95, importin beta-1 su 97.5 0.0091 3.1E-07 59.3 21.1 189 44-247 225-439 (462)
10 1u6g_C TIP120 protein, CAND1; 97.5 0.005 1.7E-07 70.3 21.5 193 37-247 7-206 (1230)
11 1xqr_A HSPBP1 protein; armadil 97.5 0.0047 1.6E-07 60.2 18.1 195 32-246 24-239 (296)
12 4hxt_A De novo protein OR329; 97.5 0.0036 1.2E-07 56.9 15.8 188 38-245 4-199 (252)
13 4db6_A Armadillo repeat protei 97.4 0.0045 1.5E-07 55.3 15.9 186 38-244 14-208 (210)
14 4b8j_A Importin subunit alpha- 97.4 0.0038 1.3E-07 64.3 17.4 188 37-244 75-272 (528)
15 3ltj_A Alpharep-4; protein eng 97.4 0.012 4.1E-07 52.4 17.7 152 36-243 14-165 (201)
16 1oyz_A Hypothetical protein YI 97.3 0.021 7E-07 53.6 19.5 163 37-243 24-186 (280)
17 3ltm_A Alpha-REP4; protein eng 97.3 0.015 5.1E-07 52.2 17.2 152 36-243 19-170 (211)
18 1u6g_C TIP120 protein, CAND1; 97.3 0.015 5.1E-07 66.3 21.2 198 36-247 475-681 (1230)
19 1qgr_A Protein (importin beta 97.3 0.016 5.6E-07 62.7 20.5 201 35-247 127-359 (876)
20 4hxt_A De novo protein OR329; 97.3 0.013 4.6E-07 53.1 17.0 192 37-248 45-244 (252)
21 1wa5_B Importin alpha subunit; 97.2 0.0067 2.3E-07 62.6 16.3 189 37-245 88-286 (530)
22 1ibr_B P95, importin beta-1 su 97.1 0.021 7.1E-07 56.7 18.4 200 36-247 128-359 (462)
23 2bpt_A Importin beta-1 subunit 97.1 0.023 8E-07 61.3 19.7 202 37-247 598-813 (861)
24 2jdq_A Importin alpha-1 subuni 97.1 0.014 4.7E-07 58.0 16.6 193 37-245 65-263 (450)
25 4b8j_A Importin subunit alpha- 97.1 0.021 7.2E-07 58.7 18.3 191 37-244 118-314 (528)
26 3ul1_B Importin subunit alpha- 97.1 0.022 7.6E-07 58.9 18.4 193 37-244 58-260 (510)
27 4fdd_A Transportin-1; heat rep 97.1 0.016 5.4E-07 63.5 18.1 196 36-247 215-431 (852)
28 1qgr_A Protein (importin beta 97.0 0.039 1.3E-06 59.7 20.4 195 38-247 219-439 (876)
29 1wa5_B Importin alpha subunit; 97.0 0.015 5.1E-07 60.0 16.0 192 36-247 257-459 (530)
30 3ltj_A Alpharep-4; protein eng 97.0 0.035 1.2E-06 49.3 16.5 152 36-243 45-196 (201)
31 4db8_A Armadillo-repeat protei 96.9 0.012 4.2E-07 53.9 13.6 186 37-243 55-249 (252)
32 2bpt_A Importin beta-1 subunit 96.9 0.062 2.1E-06 58.0 20.8 190 43-247 231-442 (861)
33 3b2a_A TON_1937, putative unch 96.9 0.16 5.5E-06 48.1 20.3 184 35-247 32-217 (265)
34 2z6h_A Catenin beta-1, beta-ca 96.7 0.1 3.4E-06 55.4 20.5 187 37-244 99-291 (644)
35 3ltm_A Alpha-REP4; protein eng 96.7 0.075 2.6E-06 47.5 16.8 155 36-246 50-204 (211)
36 3tpo_A Importin subunit alpha- 96.7 0.054 1.9E-06 56.1 17.9 194 36-244 76-279 (529)
37 1jdh_A Beta-catenin; beta-cate 96.7 0.14 4.8E-06 51.9 20.4 187 37-244 102-294 (529)
38 3opb_A SWI5-dependent HO expre 96.6 0.038 1.3E-06 60.6 15.7 183 45-244 466-682 (778)
39 2qk2_A LP04448P; mini spindles 96.5 0.25 8.6E-06 45.3 18.8 150 36-206 56-209 (242)
40 3now_A UNC-45 protein, SD10334 96.4 0.076 2.6E-06 58.7 16.8 186 38-245 497-694 (810)
41 1oyz_A Hypothetical protein YI 96.3 0.066 2.3E-06 50.1 14.3 131 81-243 25-155 (280)
42 2z6g_A B-catenin; FULL-length, 96.1 0.31 1E-05 53.3 20.3 189 37-244 235-427 (780)
43 4db6_A Armadillo repeat protei 95.9 0.06 2E-06 47.8 10.9 145 84-246 17-168 (210)
44 2vgl_B AP-2 complex subunit be 95.7 0.74 2.5E-05 48.4 20.5 192 36-247 121-313 (591)
45 2vgl_B AP-2 complex subunit be 95.7 0.66 2.2E-05 48.8 19.7 145 80-244 87-267 (591)
46 3tpo_A Importin subunit alpha- 95.3 0.4 1.4E-05 49.6 16.1 191 38-247 253-451 (529)
47 4ady_A RPN2, 26S proteasome re 95.1 0.82 2.8E-05 51.2 18.6 167 51-244 452-640 (963)
48 2qk1_A Protein STU2; STU2P, XM 94.9 0.21 7E-06 47.0 11.7 120 35-156 103-224 (249)
49 1w63_A Adapter-related protein 94.4 1.1 3.8E-05 47.4 17.1 127 36-174 142-282 (618)
50 1te4_A Conserved protein MTH18 94.2 0.23 7.8E-06 41.3 9.0 86 124-241 44-129 (131)
51 3nmw_A APC variant protein; AR 94.2 2 7E-05 42.4 17.5 192 38-246 129-335 (354)
52 2z6h_A Catenin beta-1, beta-ca 94.1 1.7 5.7E-05 45.9 17.6 190 37-243 15-210 (644)
53 3now_A UNC-45 protein, SD10334 93.7 1.1 3.8E-05 49.4 15.6 195 36-244 290-523 (810)
54 1w63_A Adapter-related protein 93.5 0.88 3E-05 48.2 14.2 122 80-226 108-229 (618)
55 2z6g_A B-catenin; FULL-length, 93.4 1.2 4.3E-05 48.4 15.6 151 78-244 149-304 (780)
56 1wa5_C Importin alpha RE-expor 93.4 5.4 0.00018 44.2 21.0 133 97-246 379-526 (960)
57 3nmw_A APC variant protein; AR 93.2 2.6 8.7E-05 41.7 16.2 154 80-243 128-290 (354)
58 3ul1_B Importin subunit alpha- 93.1 0.73 2.5E-05 47.4 12.5 191 38-247 234-432 (510)
59 1xqr_A HSPBP1 protein; armadil 92.9 1.5 5E-05 42.3 13.6 134 94-245 55-196 (296)
60 3nmz_A APC variant protein; pr 92.9 4.8 0.00016 41.3 18.1 159 79-244 243-407 (458)
61 3nmz_A APC variant protein; pr 92.9 4.1 0.00014 41.8 17.6 152 81-246 288-451 (458)
62 1jdh_A Beta-catenin; beta-cate 92.5 1.5 5.3E-05 44.1 13.7 145 80-243 18-170 (529)
63 2iw3_A Elongation factor 3A; a 90.3 9.1 0.00031 43.1 18.0 193 36-247 14-206 (986)
64 2iw3_A Elongation factor 3A; a 89.1 9.5 0.00033 42.9 17.0 160 70-248 166-327 (986)
65 2db0_A 253AA long hypothetical 87.3 18 0.0006 33.3 21.6 180 35-247 31-212 (253)
66 3opb_A SWI5-dependent HO expre 86.9 5.4 0.00018 43.7 12.9 160 80-245 458-635 (778)
67 4ady_A RPN2, 26S proteasome re 86.8 8.3 0.00028 43.2 14.5 52 185-244 624-675 (963)
68 3tt9_A Plakophilin-2; cell adh 86.6 11 0.00037 35.0 13.3 143 82-243 11-178 (233)
69 1xm9_A Plakophilin 1; armadill 85.8 31 0.001 34.6 17.7 126 82-225 5-136 (457)
70 3l6x_A Catenin delta-1; cateni 85.7 9.9 0.00034 40.2 13.9 145 81-243 50-219 (584)
71 1xm9_A Plakophilin 1; armadill 84.2 26 0.00088 35.2 15.9 182 38-227 4-196 (457)
72 4gmo_A Putative uncharacterize 81.8 3 0.0001 44.7 8.1 75 79-157 35-110 (684)
73 3oc3_A Helicase MOT1, MOT1; re 81.3 12 0.0004 40.0 11.8 149 37-241 175-324 (800)
74 3m1i_C Exportin-1; heat repeat 81.0 21 0.00073 39.8 15.0 161 72-248 384-572 (1049)
75 2x1g_F Cadmus; transport prote 80.7 25 0.00085 38.6 15.3 176 36-228 546-746 (971)
76 3dad_A FH1/FH2 domain-containi 77.9 56 0.0019 32.1 15.3 70 37-109 119-190 (339)
77 1wa5_C Importin alpha RE-expor 77.3 66 0.0023 35.3 17.4 197 40-247 459-672 (960)
78 2x19_B Importin-13; nuclear tr 74.4 61 0.0021 35.3 16.0 159 36-207 529-719 (963)
79 2x19_B Importin-13; nuclear tr 73.6 1.1E+02 0.0037 33.3 18.7 114 118-247 441-558 (963)
80 1vsy_5 Proteasome activator BL 72.3 17 0.00057 41.0 10.9 182 51-248 484-667 (997)
81 2x1g_F Cadmus; transport prote 71.8 1.2E+02 0.0041 33.1 19.5 154 74-247 401-574 (971)
82 4gmo_A Putative uncharacterize 71.3 42 0.0014 35.7 13.4 34 118-151 416-453 (684)
83 3b2a_A TON_1937, putative unch 71.2 50 0.0017 31.2 12.1 146 35-203 74-219 (265)
84 2vgl_A Adaptor protein complex 70.8 1.1E+02 0.0037 32.1 21.0 179 36-239 187-392 (621)
85 2of3_A ZYG-9; multifunctional 69.5 77 0.0026 29.9 20.5 179 40-246 50-237 (266)
86 2vgl_A Adaptor protein complex 69.2 1.2E+02 0.004 31.9 16.9 128 91-248 50-180 (621)
87 3l6x_A Catenin delta-1; cateni 68.5 1.2E+02 0.0042 31.8 18.5 96 37-135 309-408 (584)
88 3gjx_A Exportin-1; transport, 62.1 32 0.0011 39.0 10.6 120 118-248 473-598 (1073)
89 3gs3_A Symplekin, LD45768P; he 61.4 1.1E+02 0.0037 28.7 13.3 113 118-244 49-172 (257)
90 1te4_A Conserved protein MTH18 60.0 10 0.00036 30.8 4.7 94 117-243 7-100 (131)
91 3ebb_A Phospholipase A2-activa 56.2 76 0.0026 30.4 10.8 102 51-153 163-264 (304)
92 3oc3_A Helicase MOT1, MOT1; re 55.4 34 0.0012 36.6 8.4 157 51-240 243-399 (800)
93 3tt9_A Plakophilin-2; cell adh 55.0 55 0.0019 30.1 9.3 107 123-247 9-123 (233)
94 4ffb_C Protein STU2; tubulin f 54.5 92 0.0031 28.5 10.9 103 45-155 112-215 (278)
95 2of3_A ZYG-9; multifunctional 52.9 1.1E+02 0.0039 28.8 11.2 106 37-157 133-241 (266)
96 3m1i_C Exportin-1; heat repeat 46.8 3.3E+02 0.011 30.0 16.0 177 48-246 61-264 (1049)
97 4hat_C Exportin-1; heat repeat 44.0 1.8E+02 0.0062 32.6 12.9 120 118-248 447-572 (1023)
98 4hat_C Exportin-1; heat repeat 41.2 1.4E+02 0.0048 33.5 11.4 120 118-247 491-620 (1023)
99 3tjz_B Coatomer subunit gamma; 40.8 2.5E+02 0.0087 27.4 12.0 94 81-196 106-199 (355)
100 3l9t_A Putative uncharacterize 37.3 2.6E+02 0.0088 26.0 14.8 167 37-241 34-203 (240)
101 3zyq_A Hepatocyte growth facto 34.1 1.8E+02 0.006 26.5 9.1 66 82-147 48-113 (226)
102 3grl_A General vesicular trans 33.2 3.4E+02 0.012 29.0 12.1 155 73-248 19-195 (651)
103 3ldz_A STAM-1, signal transduc 30.5 2.2E+02 0.0074 23.8 8.4 30 83-112 46-75 (140)
104 2if5_A Zinc finger and BTB dom 29.6 1.3E+02 0.0043 23.7 6.5 50 303-352 11-60 (120)
105 3tjz_B Coatomer subunit gamma; 29.1 4.1E+02 0.014 25.8 18.0 162 53-248 44-205 (355)
106 1x5b_A Signal transducing adap 28.6 1.9E+02 0.0066 24.9 7.9 65 82-147 55-120 (163)
107 3b84_A Zinc finger and BTB dom 26.7 1.3E+02 0.0045 23.8 6.2 49 303-351 10-58 (119)
108 3fkc_A Transcriptional regulat 26.2 1.7E+02 0.0059 23.1 6.8 60 291-350 5-64 (116)
109 4eoz_A Speckle-type POZ protei 25.9 1.1E+02 0.0037 24.8 5.6 49 304-352 12-60 (145)
110 3o2t_A Symplekin; heat repeat, 25.4 3.8E+02 0.013 26.6 10.3 113 118-244 59-182 (386)
111 1lsh_A Lipovitellin (LV-1N, LV 25.3 4.8E+02 0.016 29.2 12.4 177 37-243 392-596 (1056)
112 2ihc_A Transcription regulator 23.9 1.5E+02 0.005 23.7 6.0 51 303-353 15-65 (124)
113 1juq_A ADP-ribosylation factor 23.4 1.6E+02 0.0056 25.6 6.5 67 81-148 52-124 (171)
114 4atg_A TAF6; transcription, TF 23.2 4E+02 0.014 23.8 9.1 92 53-147 62-157 (196)
115 3g2s_A C-terminal fragment of 23.2 3.4E+02 0.012 23.0 9.4 66 82-147 51-121 (149)
116 1mhq_A ADP-ribosylation factor 23.1 3.4E+02 0.012 22.9 10.0 64 83-147 42-111 (148)
117 3a6p_A Exportin-5; exportin-5, 23.0 4.2E+02 0.015 30.0 11.5 100 52-156 600-702 (1204)
118 1r29_A B-cell lymphoma 6 prote 22.6 1.7E+02 0.0059 23.2 6.2 51 303-353 15-65 (127)
119 2vpk_A Myoneurin; transcriptio 22.2 1.8E+02 0.0063 22.6 6.2 49 302-350 7-55 (116)
120 1h2v_C 80 kDa nuclear CAP bind 22.0 3.5E+02 0.012 29.4 10.1 128 34-172 8-137 (771)
121 2yy9_A Zinc finger and BTB dom 20.1 1.6E+02 0.0055 23.9 5.5 50 302-351 10-59 (135)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.57 E-value=6.2e-06 Score=77.08 Aligned_cols=189 Identities=16% Similarity=0.212 Sum_probs=139.4
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhh-cCCCHHHHHHHHHHHhHheeecCCCCchHH
Q 014240 40 EALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSI-KRGSSREIALASHAIGLLALTVGYGENSRE 118 (428)
Q Consensus 40 ~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~si-kkg~~~E~~lA~~~l~Ll~l~lg~~~~~ee 118 (428)
.+.+.+..|.-+.|.+|+..|...+.... .+....+..++..+.+.+ |.....=+..|+.+++.++-.+|. .-+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~--~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~--~~~~ 94 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHP--KLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK--RFSN 94 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCS--SBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG--GGHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCC--CCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh--hHHH
Confidence 46677888999999999999988876521 233344567888888888 455566678999999999988874 2345
Q ss_pred HHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHH
Q 014240 119 ILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWS 198 (428)
Q Consensus 119 i~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~ 198 (428)
....+.|+|...+.|. ....|.+++.||.-+ +.... +...|+.+...+.. .++.+-..++..-+
T Consensus 95 ~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~--~~~~~---~~~ll~~l~~~l~~----------~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 95 YASACVPSLLEKFKEK-KPNVVTALREAIDAI--YASTS---LEAQQESIVESLSN----------KNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHH--HTTSC---HHHHHHHHHHHTTC----------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH--HHcCC---HHHHHHHHHHHHcC----------CChHHHHHHHHHHH
Confidence 5667888888887774 456777777776644 33333 34556666665533 45788888888888
Q ss_pred HhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 199 FLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 199 lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
.++....+.......+...+|.|..+|+..+.+||-+|-++|+.++....
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 88877755434445678899999999999999999999999999998653
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2.4e-05 Score=74.44 Aligned_cols=192 Identities=13% Similarity=0.187 Sum_probs=133.9
Q ss_pred HHHHHhcccchHHHHHHHHHHHH-HHHhhhhhhhh--hhhHhHHHHHHHhhh-cCCCHHHHHHHHHHHhHheeecC-CCC
Q 014240 40 EALDALYEKRGSTREKALSSIIE-AFNNTLQHQFV--EKKFATLLHQCLSSI-KRGSSREIALASHAIGLLALTVG-YGE 114 (428)
Q Consensus 40 ~~id~l~eKr~stR~~aL~~l~~-al~~~~~~~fi--~~~~~TL~~~~~~si-kkg~~~E~~lA~~~l~Ll~l~lg-~~~ 114 (428)
.+-+.+..|.-+.|.+||..|.. ++.. .++.. ...+.++++.+.+.+ ++....-+..|+++++.++-.++ .+
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~--~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~- 96 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQ--TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG- 96 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGG--CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhc--CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc-
Confidence 35566778888999999999888 7754 12333 345568899999999 66677778999999999997776 43
Q ss_pred chH-HHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC-CChHH-HHHHHHHHHHHhccCCCCccccCCCCHHHHH
Q 014240 115 NSR-EILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG-NDPEE-TERTMQIMWQIVHPKLGSNVVATRPSAPIIT 191 (428)
Q Consensus 115 ~~e-ei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~-~d~~~-~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~ 191 (428)
-+ .....++|+|...+.|... .++.++..||-.++-.+. ..+.. +..+|+.+...+.+ ..+.+..
T Consensus 97 -f~~~y~~~llp~ll~~l~dkk~-~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~----------k~~~vk~ 164 (249)
T 2qk1_A 97 -FSKDYVSLVFTPLLDRTKEKKP-SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH----------KTPQIRM 164 (249)
T ss_dssp -SCHHHHHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC----------SSHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC----------CChHHHH
Confidence 22 4556788888887777653 343444444332222221 11111 34567766665543 3578889
Q ss_pred HHHHHHHHhHhcCCC--CccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 192 AMVSAWSFLLTTMDG--CSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 192 AAL~aW~lLlT~~~~--~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
+++..-+-++...+. ..+. ..+ ...+|.|..+|+.++.+||-+|-++++.++-..
T Consensus 165 ~al~~l~~~~~~~~~~~~~l~-~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 165 ECTQLFNASMKEEKDGYSTLQ-RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHHHHHHHHHCCSCSHHHH-HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 999888888876554 2222 356 788999999999999999999999999999875
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.66 E-value=0.0017 Score=66.79 Aligned_cols=185 Identities=9% Similarity=-0.001 Sum_probs=123.3
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHH
Q 014240 41 ALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREIL 120 (428)
Q Consensus 41 ~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~ 120 (428)
+...+.+.....|..|+..+.......- .+ .....++..+...++-....=+..|+.+++-++-.++. +.+.
T Consensus 169 l~~l~~d~~~~VR~~a~~~l~~l~~~~~-~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~ 240 (588)
T 1b3u_A 169 FRNLCSDDTPMVRRAAASKLGEFAKVLE-LD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLE 240 (588)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHTSC-HH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhc-HH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHH
Confidence 3345567777888888887765543211 11 11345666677777555555566788888888776662 4667
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHh
Q 014240 121 EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFL 200 (428)
Q Consensus 121 ~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lL 200 (428)
+.+.|.+.+.+.|. +...|..++.+|+.++-..+.+. -....+..+...+. .+++.|..+|..+++-+
T Consensus 241 ~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~----------d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 241 ALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPEI-TKTDLVPAFQNLMK----------DCEAEVRAAASHKVKEF 308 (588)
T ss_dssp HHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHHH-HHHTHHHHHHHHHT----------CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCccc-chhHHHHHHHHHhC----------CCcHHHHHHHHHHHHHH
Confidence 77899988887653 45678888999987765443211 12234455555442 25678999999999999
Q ss_pred HhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 201 LTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 201 lT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
...+++.......+...+|.+..++...+..||.+|..+|.-+.+
T Consensus 309 ~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp HHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred HHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 988876432223456778888888888889999988877766554
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.63 E-value=0.0018 Score=66.73 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=118.0
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHH
Q 014240 40 EALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREI 119 (428)
Q Consensus 40 ~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei 119 (428)
.++..+.++.-..|..++..|.... ..+-.+++. ..++..+.+.++.....=+..|+.+++-++-.+|. +..
T Consensus 406 ~l~~~~~d~~~~vr~~~~~~l~~l~-~~~~~~~~~---~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----~~~ 477 (588)
T 1b3u_A 406 AIVELAEDAKWRVRLAIIEYMPLLA-GQLGVEFFD---EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK----EWA 477 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHH-HHHCGGGCC---HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHH-HHcCHHHHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhH
Confidence 3344455666666777766554332 222222222 35677777888666554567788888888877773 345
Q ss_pred HHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHH
Q 014240 120 LEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSF 199 (428)
Q Consensus 120 ~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~l 199 (428)
++.+.|.|.....+ .+...|..++.+++.++-..+.+. -....+..+...+. .+.+.|..+|+.+|+-
T Consensus 478 ~~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~~l~----------d~~~~Vr~~a~~~l~~ 545 (588)
T 1b3u_A 478 HATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVCGQDI-TTKHMLPTVLRMAG----------DPVANVRFNVAKSLQK 545 (588)
T ss_dssp HHHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHHH-HHHHTHHHHHHGGG----------CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhhCC----------CCCchHHHHHHHHHHH
Confidence 67888888776543 345778888888887665433211 12234444444332 2567899999999999
Q ss_pred hHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 200 LLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 200 LlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
+...+..... .+..+|.|..+++..|.+||.+|.++++-|-
T Consensus 546 l~~~~~~~~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 546 IGPILDNSTL----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HGGGSCHHHH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHhchhhh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 9987644211 2466788888888889999999999998653
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.62 E-value=0.0012 Score=72.39 Aligned_cols=194 Identities=12% Similarity=0.053 Sum_probs=131.3
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcC---------CC----HHH--------
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKR---------GS----SRE-------- 95 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikk---------g~----~~E-------- 95 (428)
.+.-++..+.++-...|..|++.+...........++......++..++..+.. +. ..|
T Consensus 257 l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~ 336 (852)
T 4fdd_A 257 IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN 336 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCC
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccch
Confidence 344455566677778899999887765544444455666677888888887742 21 111
Q ss_pred -HHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHhc
Q 014240 96 -IALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE-ETERTMQIMWQIVH 173 (428)
Q Consensus 96 -~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~-~~~~~m~~l~~i~~ 173 (428)
+..|+.+++.++-..| +.++..+.|.|...+.+. +...|.+++.+||.++-.++.... -+...+..+...+.
T Consensus 337 vr~~a~~~L~~la~~~~-----~~~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~ 410 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYR-----DELLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS 410 (852)
T ss_dssp HHHHHHHHHHHHHHHHG-----GGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC
Confidence 5678888988887776 257778888888887764 578888888888766532221110 12233444443331
Q ss_pred cCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 174 PKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 174 ~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
.+++.|..+|+.+-+-+...++.... .......++.|...|..++..||.+|..+|+-+.|..
T Consensus 411 ----------d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 411 ----------DKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp ----------CSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 25678888888888877776544322 2455688899999998889999999999999998865
No 6
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0013 Score=62.82 Aligned_cols=191 Identities=10% Similarity=0.072 Sum_probs=113.1
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHhhhh---hhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchH
Q 014240 41 ALDALYEKRGSTREKALSSIIEAFNNTLQ---HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (428)
Q Consensus 41 ~id~l~eKr~stR~~aL~~l~~al~~~~~---~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~e 117 (428)
.-+.|..|.=+.|.+||+.+...|..... .+-....+..+...+.+.++-....=+..|+.++..++-.+|......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34789999999999999999988875321 111111234445555566643334445667777777776555321111
Q ss_pred ----HHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHH
Q 014240 118 ----EILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (428)
Q Consensus 118 ----ei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AA 193 (428)
.+...+.|.|..-+-..+....|..++.+|-.++..+.. .+. +++.+...+. ..+|.+.+++
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-~~~---~~e~l~~~l~----------~Knpkv~~~~ 159 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-ITQ---SVELVIPFFE----------KKLPKLIAAA 159 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-SHH---HHHHHGGGGG----------CSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-HHH---HHHHHHHHHh----------ccCHHHHHHH
Confidence 223344444432211223345566677666555444432 222 2333333222 2568899998
Q ss_pred HHHHHHhHhcCCCCccchh-hHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 194 VSAWSFLLTTMDGCSLDSK-KWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 194 L~aW~lLlT~~~~~~~~~~-~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
+..-.-++.......++.. .+...++.+..+|++.|.+||-+|-+.+.-+|=
T Consensus 160 l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 160 ANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8888888877655555432 345566778889999999999999998888874
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.59 E-value=0.0019 Score=59.41 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=124.5
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhh--hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCC
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGY 112 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~--~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~ 112 (428)
...+..++..|.......|..|+..|...+.... ...++. ...+..+.+.++.++..-+..|+.+++-++....
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~---~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~- 86 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID---AGALPALVQLLSSPNEQILQEALWALSNIASGGN- 86 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHH---cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-
Confidence 3447888999988888899999999977776421 112222 3567788888887776667788888887775322
Q ss_pred CCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHhccCCCCccccCCCC
Q 014240 113 GENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPS 186 (428)
Q Consensus 113 ~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~-----~m~~l~~i~~~~~g~~~~a~~~~ 186 (428)
+....+.+ ...|+|.+++.++ +...+..|+.+|+-++ ......... .+..+..++.. ++
T Consensus 87 -~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~~~i~~L~~lL~~----------~~ 151 (252)
T 4db8_A 87 -EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA---SGGNEQIQAVIDAGALPALVQLLSS----------PN 151 (252)
T ss_dssp -HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHT---TSCHHHHHHHHHTTHHHHHHHGGGC----------SC
T ss_pred -HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhh---cCCchHHHHHHHCCCHHHHHHHHhC----------CC
Confidence 22344444 3789999998874 5677777777776653 222222122 23344444432 46
Q ss_pred HHHHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 187 APIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 187 ~~l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
+.+...|+.+-+-|...-+.. ..... ...+|.|..+|.+++..||..|..+|+-+.
T Consensus 152 ~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 152 EQILQEALWALSNIASGGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHH--HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChHH--HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 678888877766665432111 11111 366899999999999999999999998775
No 8
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.55 E-value=0.0022 Score=63.83 Aligned_cols=191 Identities=13% Similarity=0.063 Sum_probs=125.0
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhH-h-HHHHHHHhhhcCC-CHHHHHHHHHHHhHheeecCCCC
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKF-A-TLLHQCLSSIKRG-SSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~-~-TL~~~~~~sikkg-~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
+...+..|.......|..|+..|...+....-+ .+.... . .++..+.+.++.+ ...-+..|+.+++-++.... +
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~-~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~--~ 98 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNP-PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS--L 98 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSC-CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH--H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC-cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH--H
Confidence 566777777667778999999998877632111 111111 2 5777788888777 56667888888888775221 1
Q ss_pred chHHHH-HhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHhccCCCCccccCCCCHH
Q 014240 115 NSREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPSAP 188 (428)
Q Consensus 115 ~~eei~-~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~-----~m~~l~~i~~~~~g~~~~a~~~~~~ 188 (428)
....+. ....|.|.+.+.++ ++..|..++.+|+-++.- +++-... .+..+..++.. ..++.
T Consensus 99 ~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~~l~~---------~~~~~ 165 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGD---STMCRDYVLDCNILPPLLQLFSK---------QNRLT 165 (450)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHHTTS---------CCCHH
T ss_pred HHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccC---CHHHHHHHHHCCCHHHHHHHhcC---------CCCHH
Confidence 122333 35889999988864 567788888888766542 2221111 23344444432 25678
Q ss_pred HHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 189 IITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 189 l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
+...|+.+++-|.....+... .......+|.|..+|.++|..||..|..+|+-+.+
T Consensus 166 v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 166 MTRNAVWALSNLCRGKSPPPE-FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHHHHHHHHHHCCSSSCCC-GGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence 888888888877754422211 12346889999999999999999999998887754
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.53 E-value=0.0091 Score=59.33 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=124.2
Q ss_pred HhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHh-HHHHHHHhhhcCCCHHHHHHHHHHHhHheeec------------
Q 014240 44 ALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFA-TLLHQCLSSIKRGSSREIALASHAIGLLALTV------------ 110 (428)
Q Consensus 44 ~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~-TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~l------------ 110 (428)
.+.......|..+++.|.......+ +++..... .++..++.+++.....=+..|+..+.-++-..
T Consensus 225 ~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 225 ATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCG--GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3444456679999988877766443 33434445 77777777775544333456666555554321
Q ss_pred -------CCCCchHHHHHhhhHHHHHHhhcC------CChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCC
Q 014240 111 -------GYGENSREILEESVAPISQALKSG------FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLG 177 (428)
Q Consensus 111 -------g~~~~~eei~~~~~~~L~~~l~d~------s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g 177 (428)
....-.+.....+.|.|.+.+.+. .+...|.+++.+|+.++-..+. .-+...+.++...+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~~~~~~~l~~~l~~--- 377 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKEHIKN--- 377 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHHTTC---
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcC---
Confidence 000011223466778887777642 1236788899999987776653 2233455666555432
Q ss_pred CccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 178 SNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 178 ~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
+++.+.-+|+.+.+-+...+++..+. ..+...+|.|..+|.+++..||.+|..+|.-+.+..
T Consensus 378 -------~~~~~r~aal~~l~~l~~~~~~~~~~-~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 378 -------PDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp -------SSHHHHHHHHHHHHHTSSSSCTTTTC-TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred -------CChHHHHHHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999866543333 344678999999999999999999999999999875
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.53 E-value=0.005 Score=70.29 Aligned_cols=193 Identities=10% Similarity=0.059 Sum_probs=136.9
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
.+.+.++.+..--...|..|+..|.+.+..... .+-+.....++..+++.+.....+-+..|+.+++-++-.++
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~----- 80 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK----- 80 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC-----
Confidence 477888888887788899999988877654321 11123345777778888865556678889999888776554
Q ss_pred HHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCC-------hHHHHHHHHHHHHHhccCCCCccccCCCCHHH
Q 014240 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGND-------PEETERTMQIMWQIVHPKLGSNVVATRPSAPI 189 (428)
Q Consensus 117 eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d-------~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l 189 (428)
+.....+.|.|...+.+... ..|..++.+|+-++-..+.. ..-....+..+...+.. .+++.+
T Consensus 81 ~~~~~~i~~~Ll~~l~d~~~-~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~---------~~~~~~ 150 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLSDKE-QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK---------QEDVSV 150 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCSSS-HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC---------CSCHHH
T ss_pred HHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC---------CCchHH
Confidence 25566778888777766544 55788888888665544432 11245667777766642 145689
Q ss_pred HHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 190 ITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 190 ~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
...|+.+|+-++...+.. +. ......++.|...|.+++..||.+|..+|+.+.+..
T Consensus 151 ~~~al~~l~~~~~~~~~~-l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGL-LV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSS-CT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhHhH-HH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 999999999998765543 22 245688899999999999999999999999987654
No 11
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.51 E-value=0.0047 Score=60.16 Aligned_cols=195 Identities=11% Similarity=0.103 Sum_probs=122.0
Q ss_pred hchhhhHHHHHHHhccc----------ch--HHHHHHHHHHHHHHHhh-hhhhhhhhhHhHHHHHHHh-hhcCCCHHHHH
Q 014240 32 LEKDTLLDEALDALYEK----------RG--STREKALSSIIEAFNNT-LQHQFVEKKFATLLHQCLS-SIKRGSSREIA 97 (428)
Q Consensus 32 ~~~~~~l~~~id~l~eK----------r~--stR~~aL~~l~~al~~~-~~~~fi~~~~~TL~~~~~~-sikkg~~~E~~ 97 (428)
.|+-+.+++++..|..- .. ..|+.||..|....... ....|+. .-.+..+.. .++.+...=+.
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~---~G~l~~Lv~~lL~s~~~~vr~ 100 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQ---LSGMHLLVGRYLEAGAAGLRW 100 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHH---TTHHHHHHHTTTTCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHH---cCCHHHHHHHHHcCCCHHHHH
Confidence 56667899999988753 11 23888888776654421 1222321 233455566 78777665577
Q ss_pred HHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHH-----HHHHHHHH
Q 014240 98 LASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQI 171 (428)
Q Consensus 98 lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~-----~m~~l~~i 171 (428)
.|+.+++-++-.-. .....+.+ ...|+|.+++...++...|..|++||+-++ .+ .+..... .+..+..+
T Consensus 101 ~Aa~~Lg~ia~~n~--~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~--~~-~~~~~~~~~~~ggi~~L~~l 175 (296)
T 1xqr_A 101 RAAQLIGTCSQNVA--AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV--RE-QEAGLLQFLRLDGFSVLMRA 175 (296)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH--TT-CHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH--cC-CcHHHHHHHHCCCHHHHHHH
Confidence 88888888763211 11223443 588999999987666777888888887543 22 2222211 23344444
Q ss_pred hccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 172 VHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 172 ~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
+.+ +++.+...|+.+.+-|... ++.... .+. ...+|.|+.+|.++|..||..|-.+|+-|...
T Consensus 176 L~~----------~d~~v~~~A~~aLs~L~~~-~~~~~~-~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 176 MQQ----------QVQKLKVKSAFLLQNLLVG-HPEHKG-TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHS----------SCHHHHHHHHHHHHHHHHH-CGGGHH-HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HcC----------CCHHHHHHHHHHHHHHHhC-ChHHHH-HHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 433 4567777777666666654 222111 222 36789999999999999999999999888654
No 12
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.46 E-value=0.0036 Score=56.94 Aligned_cols=188 Identities=16% Similarity=0.178 Sum_probs=120.9
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhh--hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~--~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
+...+..|.......|..|+..|........ ...++. ...+..+.+.++.++..-+..|+.+++-++..-. +.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~ 78 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVD---AGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EA 78 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH---CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh--HH
Confidence 5667888877778889999988877765432 222222 3567777888877776667888888888775322 12
Q ss_pred hHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHhccCCCCccccCCCCHHH
Q 014240 116 SREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPSAPI 189 (428)
Q Consensus 116 ~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~-----~m~~l~~i~~~~~g~~~~a~~~~~~l 189 (428)
...+.+ ...|.|..++.++ +...+..|+.+|+-++. .+++.... .+..+..++.. +++.+
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~~l~~----------~~~~~ 144 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIAS---GPDEAIKAIVDAGGVEVLVKLLTS----------TDSEV 144 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHHTTC----------SCHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHcC----------CCHHH
Confidence 233333 4788888888853 46667777777765543 33332222 23334444432 45778
Q ss_pred HHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 190 ITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 190 ~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
...|+.+-+-|...-+.. ...-.-...+|.|..+|.+++..||..|..+|.-+..
T Consensus 145 ~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 145 QKEAARALANIASGPDEA-IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 888887777765432211 0101113578999999999999999999999887753
No 13
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.44 E-value=0.0045 Score=55.30 Aligned_cols=186 Identities=15% Similarity=0.173 Sum_probs=119.4
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhh--hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~--~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
....+..|.......|..|+..|........ ...+++ ...+..+.+.++.++..-+..|+.+++-++.... +.
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~---~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~ 88 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID---AGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQ 88 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--HH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc--HH
Confidence 4456666777788889999988877653221 112222 3567778888877777777888888888764222 12
Q ss_pred hHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHhccCCCCccccCCCCHHH
Q 014240 116 SREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPSAPI 189 (428)
Q Consensus 116 ~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~-----m~~l~~i~~~~~g~~~~a~~~~~~l 189 (428)
...+.+ ...|+|...+.++ +...+..++.+|+-++. .+++..... +..+..++.. +++.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v 154 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS---GGNEQIQAVIDAGALPALVQLLSS----------PNEQI 154 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHHTTC----------SCHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHc---CCHHHHHHHHHcCcHHHHHHHHcC----------CCHHH
Confidence 234443 4788998888776 46666777777765543 344333222 3334444432 45678
Q ss_pred HHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 190 ITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 190 ~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
...|+.+.+-|...-+... ..+. ...++.|..+|.+++..||..|..+|.-|.
T Consensus 155 ~~~a~~aL~~l~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 155 LQEALWALSNIASGGNEQK--QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHH--HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCcHHH--HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 8888877777765322211 1122 256899999999999999999999998763
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.44 E-value=0.0038 Score=64.32 Aligned_cols=188 Identities=11% Similarity=0.134 Sum_probs=124.6
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhh---hhhhhhhhHhHHHHHHHhhhcCCC-HHHHHHHHHHHhHheeecCC
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTL---QHQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVGY 112 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~---~~~fi~~~~~TL~~~~~~sikkg~-~~E~~lA~~~l~Ll~l~lg~ 112 (428)
.+..++..|.......|..|+..|..++.... ...++. ..++..+...++.++ ..-+..|+.+++-++....
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~---~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~- 150 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ---SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS- 150 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHH---TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH---CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-
Confidence 47888888877777889999999988776432 222222 356667777777765 5667788888888775221
Q ss_pred CCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHhccCCCCccccCCCC
Q 014240 113 GENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPS 186 (428)
Q Consensus 113 ~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~-----~m~~l~~i~~~~~g~~~~a~~~~ 186 (428)
+....+.+ ...|+|..++.++ +...|..|+.+|+-++. .++.-... .+..+..++.. ..+
T Consensus 151 -~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~---~~~~~~~~i~~~g~l~~Ll~lL~~---------~~~ 216 (528)
T 4b8j_A 151 -ENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAG---DSPKCRDLVLANGALLPLLAQLNE---------HTK 216 (528)
T ss_dssp -HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH---TCHHHHHHHHHTTCHHHHHHTCCT---------TCC
T ss_pred -HHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhC---CChhhHHHHHHCCcHHHHHHHHhc---------CCC
Confidence 22233333 4888999988874 56778888888887764 22221111 22233333321 245
Q ss_pred HHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 187 APIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 187 ~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
+.+...|+.+.+-|...-+... .......+|.|..+|.+++.+||..|..+|+-|.
T Consensus 217 ~~v~~~a~~~L~~L~~~~~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 217 LSMLRNATWTLSNFCRGKPQPS--FEQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCC--HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 6788888777776665443322 2345688999999999999999999998888765
No 15
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.37 E-value=0.012 Score=52.40 Aligned_cols=152 Identities=19% Similarity=0.191 Sum_probs=106.6
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
.....+|..|.+.....|..|+..|...-. ...+..+.+.++.+...-+..|+.+++-+ |.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~----~~--- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQI----GD--- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC---
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh----CC---
Confidence 447789999999999999999987754211 13345566677666666677888887765 32
Q ss_pred hHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHH
Q 014240 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~ 195 (428)
....|.|...+.+ .++..|..++.+|+-+ + +++.+ ..+...+. .+++.|..+|+.
T Consensus 75 -----~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~---~--~~~~~----~~L~~~l~----------d~~~~vr~~a~~ 129 (201)
T 3ltj_A 75 -----ERAVEPLIKALKD-EDGWVRQSAAVALGQI---G--DERAV----EPLIKALK----------DEDWFVRIAAAF 129 (201)
T ss_dssp -----GGGHHHHHHHTTC-SSHHHHHHHHHHHHHH---C--CGGGH----HHHHHHTT----------CSSHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcC-CCHHHHHHHHHHHHHh---C--cHHHH----HHHHHHHc----------CCCHHHHHHHHH
Confidence 1356777777776 4678889999888764 2 23222 22333332 256788888888
Q ss_pred HHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 196 aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
+.+-+-. ...++.|..+|.+++..||.+|-++|+-+
T Consensus 130 aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 130 ALGEIGD------------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHTC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8776521 25678999999999999999999999876
No 16
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.31 E-value=0.021 Score=53.62 Aligned_cols=163 Identities=11% Similarity=0.025 Sum_probs=107.5
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
-+...+..|.+....+|..|+..|...- -...+..+.+.++.....-+..|+.+++-+.. ..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~------------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~----~~-- 85 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG------------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI----CK-- 85 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC----CT--
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC------------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----cc--
Confidence 4677888898888899999987765431 13345566667766666667778887776432 11
Q ss_pred HHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHH
Q 014240 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (428)
Q Consensus 117 eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~a 196 (428)
.....+.|.|...+....++.+|..++.+|+-++-... ......+..+...+. .+++.|..+|+.+
T Consensus 86 -~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~---~~~~~~~~~L~~~l~----------d~~~~vR~~a~~a 151 (280)
T 1oyz_A 86 -KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP---IYSPKIVEQSQITAF----------DKSTNVRRATAFA 151 (280)
T ss_dssp -TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHTT----------CSCHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC---cccHHHHHHHHHHhh----------CCCHHHHHHHHHH
Confidence 12334556666544455678889999999987653221 112233444444332 2567888888887
Q ss_pred HHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 197 W~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
.+-+-. ...+|.|..+|.+++..||.+|-.+|+-+
T Consensus 152 L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 152 ISVIND------------KATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHTC---------------CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhcCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 764321 14678899999999999999999999876
No 17
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.26 E-value=0.015 Score=52.15 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=106.2
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
..+...+..|.+.....|..|+..|...-. ...+..+.+.++.+...-+..|+.+++-+. .
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----~--- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D--- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----C---
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C---
Confidence 447788888999999999999987654311 234455666776666666778888877653 2
Q ss_pred hHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHH
Q 014240 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~ 195 (428)
....|.|...+.+ .++..|..++.+|+-+ + +.+. +..+...+. .+++.|..+|+.
T Consensus 80 -----~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~---~--~~~~----~~~L~~~l~----------d~~~~vr~~a~~ 134 (211)
T 3ltm_A 80 -----ERAVEPLIKALKD-EDGWVRQSAAVALGQI---G--DERA----VEPLIKALK----------DEDWFVRIAAAF 134 (211)
T ss_dssp -----GGGHHHHHHHTTC-SSHHHHHHHHHHHHHH---C--CGGG----HHHHHHHTT----------CSSHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcC-CCHHHHHHHHHHHHHh---C--cHHH----HHHHHHHHh----------CCCHHHHHHHHH
Confidence 1356777777765 4567888888888755 2 2322 233333332 266788889988
Q ss_pred HHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 196 aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
+.+-+- . .+.++.|..+|++++..||.+|-++|+-+
T Consensus 135 aL~~~~----~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 135 ALGEIG----D--------ERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHHC----C--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHcC----C--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 887662 1 25678999999999999999999999876
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.26 E-value=0.015 Score=66.33 Aligned_cols=198 Identities=14% Similarity=0.183 Sum_probs=134.8
Q ss_pred hhHHHHHHHhcccch--HHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCC-
Q 014240 36 TLLDEALDALYEKRG--STREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGY- 112 (428)
Q Consensus 36 ~~l~~~id~l~eKr~--stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~- 112 (428)
..+..+++.|.++.. ..|.+++..+...+... -++.+......++..+.+++......-+..|+.+++-++-.+|.
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~-~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~ 553 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH-SPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL 553 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS-CGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC-CHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCc
Confidence 345556666777653 67899998887766532 22322334567777888888665544445566677766655554
Q ss_pred ----CCchHHHHHhhhHHHHHHhhc-CCChHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHhccCCCCccccCCCC
Q 014240 113 ----GENSREILEESVAPISQALKS-GFDSSKIASLLECLAVITFVGGNDP-EETERTMQIMWQIVHPKLGSNVVATRPS 186 (428)
Q Consensus 113 ----~~~~eei~~~~~~~L~~~l~d-~s~~~~r~~~~~aLai~~fv~~~d~-~~~~~~m~~l~~i~~~~~g~~~~a~~~~ 186 (428)
+......++.+.|.|...+.. ..+...|..++.|||.++-.+|... ..+..++..+...+.. .
T Consensus 554 ~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~----------e- 622 (1230)
T 1u6g_C 554 DQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN----------E- 622 (1230)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS----------S-
T ss_pred ccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc----------c-
Confidence 123456778899998887753 3456889999999999888876543 3455666666665532 1
Q ss_pred HHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 187 APIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 187 ~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
....+++.+++.+......... ...+...+|.|...|..++..+|.+|.++|+-+....
T Consensus 623 -~~r~~~~~al~~i~~~~~~~~~-~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 623 -ITRLTTVKALTLIAGSPLKIDL-RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp -SHHHHHHHHHHHHTTCSSCCCC-HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred -hhHHHHHHHHHHHHhCccccch-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 2345678888888765443333 2566788999999999999999999999999998765
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.25 E-value=0.016 Score=62.66 Aligned_cols=201 Identities=13% Similarity=0.066 Sum_probs=125.8
Q ss_pred hhhHHHHHHHhccc--chHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCC--CHHHHHHHHHHHhHheeec
Q 014240 35 DTLLDEALDALYEK--RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG--SSREIALASHAIGLLALTV 110 (428)
Q Consensus 35 ~~~l~~~id~l~eK--r~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg--~~~E~~lA~~~l~Ll~l~l 110 (428)
.+.+...+..+... ....|..+|..+...+.. +.++.+......++..+.++++.+ +..-+..|+++++-++-.+
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQD-IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-SCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-cCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566667777666 677899999887766543 224445566788888899999877 4666788889888776544
Q ss_pred CCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCh-HHHH-HHHHHHHHHhccCCCCccccCCCCHH
Q 014240 111 GYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDP-EETE-RTMQIMWQIVHPKLGSNVVATRPSAP 188 (428)
Q Consensus 111 g~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~-~~~~-~~m~~l~~i~~~~~g~~~~a~~~~~~ 188 (428)
+..-........+.+.+...+.+ .+...|..++.+|+-+.-....-. .-+. ..+.+++..+. ..++.
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~ 274 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK----------SDIDE 274 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT----------CSSHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc----------CCchH
Confidence 42101111112366667665543 345778888888886664433221 1222 44555555442 25678
Q ss_pred HHHHHHHHHHHhHhcCC-------------------CCccchhhHHhhHHHHHhhhc-------CCChHHHHHHHHHHHH
Q 014240 189 IITAMVSAWSFLLTTMD-------------------GCSLDSKKWQQSISYFSTLLD-------KDDRSIRIAAGEALAL 242 (428)
Q Consensus 189 l~~AAL~aW~lLlT~~~-------------------~~~~~~~~~~~~l~~L~~lL~-------s~d~~VRiAAGEaiAL 242 (428)
+...|+..|.-+..... ............+|.+...|. +++-.+|.+|..++..
T Consensus 275 v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~ 354 (876)
T 1qgr_A 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHH
Confidence 99999999998875420 111111123455666666663 3457899999999999
Q ss_pred HHHhc
Q 014240 243 ILETG 247 (428)
Q Consensus 243 l~E~~ 247 (428)
+.+..
T Consensus 355 l~~~~ 359 (876)
T 1qgr_A 355 LATCC 359 (876)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 88754
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.25 E-value=0.013 Score=53.11 Aligned_cols=192 Identities=14% Similarity=0.098 Sum_probs=121.3
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhh-hhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNT-LQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~-~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
.+...+..|.......|..|+..|....... .....+. ....+..+.+.++.++.+=+..|+.+++-++.... +.
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~ 120 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV--DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EA 120 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH--HH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--HH
Confidence 4666777777777788999888776654431 1111111 13456777788877776667788888888775222 12
Q ss_pred hHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHhccCCCCccccCCCCHHH
Q 014240 116 SREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPSAPI 189 (428)
Q Consensus 116 ~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~-----~m~~l~~i~~~~~g~~~~a~~~~~~l 189 (428)
...+.+ ...|.|.+++.++. ...+..++.+|+-++ ...++.... .+..+..++.. +++.+
T Consensus 121 ~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~---~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v 186 (252)
T 4hxt_A 121 IKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIA---SGPDEAIKAIVDAGGVEVLVKLLTS----------TDSEV 186 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHT---TSCHHHHHHHHHTTHHHHHHHHTTC----------SCHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHH---cCCHHHHHHHHHCcCHHHHHHHHCC----------CCHHH
Confidence 333443 47888888887544 556677777776544 333332222 33344554432 55688
Q ss_pred HHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 190 ITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 190 ~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
...|+.+.+-|...- +. ....+. ...++.|..+|.+++.+||..|-.+|+-|.+...
T Consensus 187 ~~~a~~~L~~l~~~~-~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 187 QKEAARALANIASGP-TS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHTTSB-HH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHcCC-HH-HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 888888877776421 11 111111 3568999999999999999999999999988653
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.22 E-value=0.0067 Score=62.63 Aligned_cols=189 Identities=12% Similarity=0.095 Sum_probs=124.7
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhh--h-hhhhhhhhHhHHHHHHHhhhcCC-CHHHHHHHHHHHhHheeecCC
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNT--L-QHQFVEKKFATLLHQCLSSIKRG-SSREIALASHAIGLLALTVGY 112 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~--~-~~~fi~~~~~TL~~~~~~sikkg-~~~E~~lA~~~l~Ll~l~lg~ 112 (428)
.+..++..|.......|..|+..|...+... . ....+ ...++..+...++.+ ...-+..|+.+++-++....
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~---~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~- 163 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI---QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS- 163 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHH---HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHH---HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-
Confidence 4777888887777778999999988877642 1 11122 245677788888777 56667788888887765321
Q ss_pred CCchHHHH-HhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHhccCCCCccccCCCC
Q 014240 113 GENSREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE-----RTMQIMWQIVHPKLGSNVVATRPS 186 (428)
Q Consensus 113 ~~~~eei~-~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~-----~~m~~l~~i~~~~~g~~~~a~~~~ 186 (428)
+....+. ....|+|.+++.++ +...|..|+.+|+-++. .+++... ..+..+..++.. .+
T Consensus 164 -~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~----------~~ 228 (530)
T 1wa5_B 164 -AQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAG---DSTDYRDYVLQCNAMEPILGLFNS----------NK 228 (530)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTCHHHHHHGGGS----------CC
T ss_pred -HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhC---CCccchHHHHHcCcHHHHHHHhcc----------CC
Confidence 1122333 36789999988864 56777888888876653 2222111 123334444432 45
Q ss_pred HHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 187 APIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 187 ~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
+.+...|+.+.+-|...-.+.. ........+|.|..+|.+++..||..|..+|.-|..
T Consensus 229 ~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 229 PSLIRTATWTLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCC-CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCCCCCCC-cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 6788888877777775442221 223456889999999999999999999999887763
No 22
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.14 E-value=0.021 Score=56.72 Aligned_cols=200 Identities=13% Similarity=0.069 Sum_probs=119.2
Q ss_pred hhHHHHHHHhccc--chHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCC--CHHHHHHHHHHHhHheeecC
Q 014240 36 TLLDEALDALYEK--RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG--SSREIALASHAIGLLALTVG 111 (428)
Q Consensus 36 ~~l~~~id~l~eK--r~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg--~~~E~~lA~~~l~Ll~l~lg 111 (428)
+.+...+..+... ....|+.||..+...+.. +.++++......++..+.++++.. +..=+..|+++++-+.-.+.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQD-IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-SCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh-CCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666 667899999888766653 223445556678999999999776 44445667777765432222
Q ss_pred CCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCh-HHHH-HHHHHHHHHhccCCCCccccCCCCHHH
Q 014240 112 YGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDP-EETE-RTMQIMWQIVHPKLGSNVVATRPSAPI 189 (428)
Q Consensus 112 ~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~-~~~~-~~m~~l~~i~~~~~g~~~~a~~~~~~l 189 (428)
.......+...+.+.|...+. ..+...|..++.+|+-++-...... .-+. ..+.++...+. ..++.+
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~v 275 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK----------SDIDEV 275 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH----------CSSHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCchHH
Confidence 100011112234666665543 3456778888888886664432111 1112 33444444332 245688
Q ss_pred HHHHHHHHHHhHhcC-------------------CCCccchhhHHhhHHHHHhhhc-------CCChHHHHHHHHHHHHH
Q 014240 190 ITAMVSAWSFLLTTM-------------------DGCSLDSKKWQQSISYFSTLLD-------KDDRSIRIAAGEALALI 243 (428)
Q Consensus 190 ~~AAL~aW~lLlT~~-------------------~~~~~~~~~~~~~l~~L~~lL~-------s~d~~VRiAAGEaiALl 243 (428)
...|+..|+-+.... ....+....+...+|.+...|. .++..+|.+|+.+|..+
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 999999999887642 1111111123456677666663 23468999999999999
Q ss_pred HHhc
Q 014240 244 LETG 247 (428)
Q Consensus 244 ~E~~ 247 (428)
.+..
T Consensus 356 ~~~~ 359 (462)
T 1ibr_B 356 ATCC 359 (462)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8875
No 23
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.10 E-value=0.023 Score=61.32 Aligned_cols=202 Identities=13% Similarity=0.086 Sum_probs=129.5
Q ss_pred hHHHHHHHhcccch-HHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 37 LLDEALDALYEKRG-STREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 37 ~l~~~id~l~eKr~-stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
.+..++..+..... ..|+.++..+..+. .....+| ......++..+...++....+-+..|+.+++-++-.+|. .
T Consensus 598 l~~~l~~~l~~~~~~~v~~~~~~~l~~l~-~~~~~~~-~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~ 673 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSAFIEDDVFYAISALA-ASLGKGF-EKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--D 673 (861)
T ss_dssp HHHHHHHHHHSTTGGGTHHHHHHHHHHHH-HHHGGGG-HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--G
T ss_pred HHHHHHHHHccCCCCcHHHHHHHHHHHHH-HHHhhhH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch--h
Confidence 34445555555545 67888776554332 2222222 234566777888887544444566788888888877773 3
Q ss_pred hHHHHHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHhccCCCCccccCCCC-----HH
Q 014240 116 SREILEESVAPISQALKSGF-DSSKIASLLECLAVITFVGGNDPEE-TERTMQIMWQIVHPKLGSNVVATRPS-----AP 188 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d~s-~~~~r~~~~~aLai~~fv~~~d~~~-~~~~m~~l~~i~~~~~g~~~~a~~~~-----~~ 188 (428)
-......+.|.|.+.+.+.. +...|..++.|||-++-..+.+... +..+|..+...+..+.|.. .++ ..
T Consensus 674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~----d~d~~~~~~~ 749 (861)
T 2bpt_A 674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENG----TLEALDYQIK 749 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSS----SHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCC----ChHHHHHHHH
Confidence 45667788888888888763 4678899999999887776655433 3455666665554322210 011 35
Q ss_pred HHHHHHHHHHHhHhcCCCC--ccchhhHHhhHHHHHhhhcCC----ChHHHHHHHHHHHHHHHhc
Q 014240 189 IITAMVSAWSFLLTTMDGC--SLDSKKWQQSISYFSTLLDKD----DRSIRIAAGEALALILETG 247 (428)
Q Consensus 189 l~~AAL~aW~lLlT~~~~~--~~~~~~~~~~l~~L~~lL~s~----d~~VRiAAGEaiALl~E~~ 247 (428)
+..+++.+|+-++..+... .+. ..+...++.|...++.. +..||.+|..+|+-+....
T Consensus 750 vr~~~l~~~~~i~~~l~~~~~~~~-~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 750 VLEAVLDAYVGIVAGLHDKPEALF-PYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHG-GGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHc
Confidence 7789999999999877642 121 23344555555565542 8899999999999999864
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.09 E-value=0.014 Score=58.03 Aligned_cols=193 Identities=10% Similarity=0.056 Sum_probs=121.4
Q ss_pred hHHHHHHHhccc-chHHHHHHHHHHHHHHHhh--hhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCC
Q 014240 37 LLDEALDALYEK-RGSTREKALSSIIEAFNNT--LQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113 (428)
Q Consensus 37 ~l~~~id~l~eK-r~stR~~aL~~l~~al~~~--~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~ 113 (428)
.+...+..|... ....|..|+..|..+.... ....++ ...++..+.+.++.+...=+..|+.+++-++-...
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-- 139 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVI---QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-- 139 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHH---HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH---hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH--
Confidence 455666667666 6677888888777665421 111122 14567777888877776667788888888765322
Q ss_pred CchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhccCCCCccccCCCCHHHH
Q 014240 114 ENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGN--DPEETERTMQIMWQIVHPKLGSNVVATRPSAPII 190 (428)
Q Consensus 114 ~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~--d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~ 190 (428)
+....+.+ ...|+|.+++.+..+...|..++.+|+-++.-... ...-+...+..+..++.. +++.+.
T Consensus 140 ~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~----------~~~~v~ 209 (450)
T 2jdq_A 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV----------SDTDVL 209 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC----------CCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc----------CCHHHH
Confidence 11223333 58899999998766778888888888877643211 111123344555555532 446777
Q ss_pred HHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 191 TAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 191 ~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
..|+.+.+-|....+. ....-.-...+|.|..+|.+++..||.+|..+|+-+..
T Consensus 210 ~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 210 ADACWALSYLSDGPND-KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHHHHHHHHHTSSSHH-HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCcH-HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhh
Confidence 7776666655432211 11101113578999999999999999999999987753
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.08 E-value=0.021 Score=58.66 Aligned_cols=191 Identities=14% Similarity=0.092 Sum_probs=121.1
Q ss_pred hHHHHHHHhcccc-hHHHHHHHHHHHHHHHhhh--hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCC
Q 014240 37 LLDEALDALYEKR-GSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113 (428)
Q Consensus 37 ~l~~~id~l~eKr-~stR~~aL~~l~~al~~~~--~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~ 113 (428)
.+...+..|.... ...|..|+..|..+..... ...++. ...+..+.+.++.+...=+..|+.+++-++....
T Consensus 118 ~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~---~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-- 192 (528)
T 4b8j_A 118 VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID---HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP-- 192 (528)
T ss_dssp CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH--
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh---CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh--
Confidence 3455666666554 6778888877766654221 111121 2466677777777766667788888888764211
Q ss_pred CchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHH
Q 014240 114 ENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGN-DPEETERTMQIMWQIVHPKLGSNVVATRPSAPIIT 191 (428)
Q Consensus 114 ~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~-d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~ 191 (428)
.....+.+ ...|+|..++....+...+..++.+|+-++.-... ...-....+..+..++.. +++.+..
T Consensus 193 ~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~v~~ 262 (528)
T 4b8j_A 193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS----------NDEEVLT 262 (528)
T ss_dssp HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC----------CCHHHHH
T ss_pred hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC----------CCHHHHH
Confidence 11123333 47888988887667777888888888877654321 222223455555555533 5678889
Q ss_pred HHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 192 AMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 192 AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
.|+.+.+-|....+ .... ... ...+|.|..+|.+++..||..|-.+|+-|.
T Consensus 263 ~a~~aL~~l~~~~~-~~~~-~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 263 DACWALSYLSDGTN-DKIQ-AVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp HHHHHHHHHTSSCH-HHHH-HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCH-HHHH-HHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 99888887764321 1111 111 257899999999999999999999988775
No 26
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.07 E-value=0.022 Score=58.93 Aligned_cols=193 Identities=11% Similarity=0.128 Sum_probs=116.5
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhh--hhhhhhHhHHHHHHHhhhcCCCHHH-HHHHHHHHhHheeecCCC
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQH--QFVEKKFATLLHQCLSSIKRGSSRE-IALASHAIGLLALTVGYG 113 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~--~fi~~~~~TL~~~~~~sikkg~~~E-~~lA~~~l~Ll~l~lg~~ 113 (428)
.+++++..+.-.-...+..|...+++.|+..--| +-|- ..-++..+.+.++..+..+ |..|+.+++-+|. |..
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii--~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias--~~~ 133 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNII--RAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTS 133 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHH--HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT--SCH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH--HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCH
Confidence 4788899998777788899999999988743221 2111 1346777888887665344 5678888887763 432
Q ss_pred CchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHhccCCCCccccCCCCH
Q 014240 114 ENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPSA 187 (428)
Q Consensus 114 ~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~-----m~~l~~i~~~~~g~~~~a~~~~~ 187 (428)
+....|.+ ...|+|.+.+.++ +...|..|++||+-++ +++++--... +..+..++...+.. ....
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa---~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~-----~~~~ 204 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIA---GDGSAFRDLVIKHGAIDPLLALLAVPDLS-----TLAC 204 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHH---TTCHHHHHHHHHTTCHHHHHHHTCSSCGG-----GSCH
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHH---hCCHHHHHHHHHcCChHHHHHHHHhccch-----hhhH
Confidence 33445555 4789999988754 4567778888887665 2233211111 22344444331111 1122
Q ss_pred HHHHHHHHHHHHhHhcCCC-CccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 188 PIITAMVSAWSFLLTTMDG-CSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 188 ~l~~AAL~aW~lLlT~~~~-~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
.+...| +|++--..... ...........+|.|..+|.+++.+|+..|..+|+-|.
T Consensus 205 ~~~~~a--~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 205 GYLRNL--TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHHHH--HHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHH--HHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 333333 33333221111 11111334678999999999999999999998888765
No 27
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.06 E-value=0.016 Score=63.49 Aligned_cols=196 Identities=8% Similarity=-0.011 Sum_probs=129.2
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
..+...+..+.++....|..++..|....... ++++......++..+.+.++.....=+..|+..+.-+|=.......
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVR--MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC--HHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHH
Confidence 44555666677888889999999887776543 3556666678888888888654433345666665544421100000
Q ss_pred hHHHHHhhhHHHHHHh-----------hcC----------CChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcc
Q 014240 116 SREILEESVAPISQAL-----------KSG----------FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHP 174 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l-----------~d~----------s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~ 174 (428)
.......+.|.|...+ .|. ..-..|.+++.+|+.++-..+. +-+...+.++...+..
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~~l~~~l~~~l~~ 370 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLPHILPLLKELLFH 370 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcC
Confidence 0112345667776665 221 1124577888899887766552 2344566776666543
Q ss_pred CCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 175 KLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 175 ~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
+++.+..+|+.+.+-+...++. .+. ..+...+|.|..+|..++..||.+|..+|+-+.+..
T Consensus 371 ----------~~~~~R~aa~~alg~i~~~~~~-~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 371 ----------HEWVVKESGILVLGAIAEGCMQ-GMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp ----------SSHHHHHHHHHHHHHTTTTTHH-HHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHHhcchH-HHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999876654 222 356788999999999999999999999999887753
No 28
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.01 E-value=0.039 Score=59.70 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=124.6
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHh-HHHHHHHhhhcCCCHHHHHHHHHHHhHheeec------
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFA-TLLHQCLSSIKRGSSREIALASHAIGLLALTV------ 110 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~-TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~l------ 110 (428)
+.-+.+.+.+.....|..+++.|..++...+ .++..... .++..+..+++.....=+..|+.++.-++-..
T Consensus 219 l~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG--GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 3334445556667789999988877766543 23334445 77777777774433322445555554444221
Q ss_pred -------C------CCCchHHHHHhhhHHHHHHhhcC------CChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 014240 111 -------G------YGENSREILEESVAPISQALKSG------FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQI 171 (428)
Q Consensus 111 -------g------~~~~~eei~~~~~~~L~~~l~d~------s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i 171 (428)
+ ...-....++.+.|+|.+.+... .+...|.+++.+|+.++-..+. .-+...+.++...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~l~~l~~~ 374 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKEH 374 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHH
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHHHHHHHHHHH
Confidence 0 00011223467778887777532 2236788889999877766552 2244555555554
Q ss_pred hccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 172 VHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 172 ~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
+.. +++.+..+|+.+++-+...+++..+. ..+...+|.|...|..++..||.+|..+|+-+.+..
T Consensus 375 l~~----------~~~~~r~~a~~~l~~i~~~~~~~~~~-~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 439 (876)
T 1qgr_A 375 IKN----------PDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp TTC----------SSHHHHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred ccC----------CChHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence 432 56789999999999988766533333 355678899999999999999999999999888864
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.98 E-value=0.015 Score=60.01 Aligned_cols=192 Identities=14% Similarity=0.069 Sum_probs=124.8
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhh--hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCC
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~--~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~ 113 (428)
..+..++..|.......|..++..|........ ...++. ..++..+...++.++..=+..|+.+++-++...+
T Consensus 257 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~---~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-- 331 (530)
T 1wa5_B 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID---VRIPKRLVELLSHESTLVQTPALRAVGNIVTGND-- 331 (530)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH---TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh---cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH--
Confidence 456677777777777789888887766543211 111121 3566777777877766667788888887764322
Q ss_pred CchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHhccCCCCccccCCCCH
Q 014240 114 ENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPSA 187 (428)
Q Consensus 114 ~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~-----m~~l~~i~~~~~g~~~~a~~~~~ 187 (428)
.....+.+ .+.|.|..++.++ +...|..++.+|+-++. ...+.+... +..+..++.. +++
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~----------~~~ 397 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA---GNTEQIQAVIDANLIPPLVKLLEV----------AEY 397 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTCHHHHHHHHHH----------SCH
T ss_pred HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHhc----------CCH
Confidence 22233343 5788888888876 56777788888876554 233333222 2234444432 456
Q ss_pred HHHHHHHHHHHHhHhcCCC--CccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 188 PIITAMVSAWSFLLTTMDG--CSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 188 ~l~~AAL~aW~lLlT~~~~--~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
.+..+|+.+-+-+.+..++ .... .++ ...+|.|..+|.+.+..||..|-.+|.-+.+..
T Consensus 398 ~v~~~a~~aL~~l~~~~~~~~~~~~-~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 398 KTKKEACWAISNASSGGLQRPDIIR-YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTHHHH-HHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHH-HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 7888888888888775443 2211 222 257999999999999999999999999998765
No 30
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.97 E-value=0.035 Score=49.28 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=103.6
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
..+...+..|.++....|..|+..|...-. ...+..+.+.++.....-+..|+.+++-+ |.
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~--- 105 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGD------------ERAVEPLIKALKDEDGWVRQSAAVALGQI----GD--- 105 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC---
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc---
Confidence 456777888888888889999876644311 12344555667666666677888887764 32
Q ss_pred hHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHH
Q 014240 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~ 195 (428)
....|.|...+.+. +..+|..++.+|+-+. +.+ .+..+...+. .+++.|..+|+.
T Consensus 106 -----~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~-----~~~----~~~~L~~~l~----------d~~~~vr~~A~~ 160 (201)
T 3ltj_A 106 -----ERAVEPLIKALKDE-DWFVRIAAAFALGEIG-----DER----AVEPLIKALK----------DEDGWVRQSAAD 160 (201)
T ss_dssp -----GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHT-----CGG----GHHHHHHHTT----------CSSHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-----CHH----HHHHHHHHHc----------CCCHHHHHHHHH
Confidence 13566777776544 6788899999987652 222 2333444442 256788899988
Q ss_pred HHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 196 aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
+.+-+- . ...++.|..+|+.++..||.+|-++|+-+
T Consensus 161 aL~~~~---------~---~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 161 ALGEIG---------G---ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHC---------S---HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHhC---------c---hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 887761 1 36788999999999999999999998754
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.95 E-value=0.012 Score=53.88 Aligned_cols=186 Identities=15% Similarity=0.164 Sum_probs=114.9
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhh--hhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNT--LQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~--~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
.+...+..|.......|..|+..|..+.... ....++. ...+..+.+.++.++..=+..|+.+++-++.....
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~---~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-- 129 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID---AGALPALVQLLSSPNEQILQEALWALSNIASGGNE-- 129 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH--
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch--
Confidence 3455666777767777888887776654321 1111111 24677788888877766677788888877543221
Q ss_pred chHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHhccCCCCccccCCCCHH
Q 014240 115 NSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPSAP 188 (428)
Q Consensus 115 ~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~-----m~~l~~i~~~~~g~~~~a~~~~~~ 188 (428)
....+.+ ...|.|.+.+.++ +...+..++.+|+-++ ..+++..... +..+..++.. +++.
T Consensus 130 ~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~ 195 (252)
T 4db8_A 130 QIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA---SGGNEQIQAVIDAGALPALVQLLSS----------PNEQ 195 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHT---TSCHHHHHHHHHTTCHHHHHHGGGC----------SSHH
T ss_pred HHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHH---cCChHHHHHHHHCCCHHHHHHHHCC----------CCHH
Confidence 1133444 4888999988765 5566677777765554 3333333222 2234444432 4678
Q ss_pred HHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 189 IITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 189 l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
+...|+.+.+-|...-+. ....+. ...+|.|..+|.+.+..||..|..+|.-|
T Consensus 196 v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 196 ILQEALWALSNIASGGNE--QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHHHHHTTSCHH--HHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHH--HHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888877642211 111222 24689999999999999999999988754
No 32
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.90 E-value=0.062 Score=57.98 Aligned_cols=190 Identities=12% Similarity=0.102 Sum_probs=124.0
Q ss_pred HHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHh-HHHHHHHhhhcCCCHHHHHHHHHHHhHheeecC----------
Q 014240 43 DALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFA-TLLHQCLSSIKRGSSREIALASHAIGLLALTVG---------- 111 (428)
Q Consensus 43 d~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~-TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg---------- 111 (428)
..+.......|..++..|..+....+ +++..... .++..+...+......=+..|+.++.-++-...
T Consensus 231 ~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 308 (861)
T 2bpt_A 231 EATQAEDIEVQAAAFGCLCKIMSKYY--TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFP 308 (861)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHHG--GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 34445567779999988877765432 34444555 777777777755443334566666655543321
Q ss_pred -----CCCchHHHHHhhhHHHHHHhhcCC------ChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCcc
Q 014240 112 -----YGENSREILEESVAPISQALKSGF------DSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNV 180 (428)
Q Consensus 112 -----~~~~~eei~~~~~~~L~~~l~d~s------~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~ 180 (428)
.......++..+.|.|...+.+.. +...|..++.+|+.++-..+. .-+...|.++...+..
T Consensus 309 ~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~~~l~~~l~~~l~~------ 380 (861)
T 2bpt_A 309 QSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HILEPVLEFVEQNITA------ 380 (861)
T ss_dssp TCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHTTC------
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHHHHHHHHHHHHcCC------
Confidence 000123456778888888777532 236788888899877755442 2345667777666542
Q ss_pred ccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 181 VATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 181 ~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
.++.+.-+|+.+++-+...+.+..+. ..+...+|.|...|..++..||.+|..+|+-+.+..
T Consensus 381 ----~~~~~r~~a~~~l~~i~~~~~~~~~~-~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 381 ----DNWRNREAAVMAFGSIMDGPDKVQRT-YYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp ----SSHHHHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred ----CChhHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 45778899999988887554322232 455677888888998899999999999888777653
No 33
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.86 E-value=0.16 Score=48.10 Aligned_cols=184 Identities=14% Similarity=0.121 Sum_probs=134.4
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHh--hhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCC
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNN--TLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGY 112 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~--~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~ 112 (428)
+.++.-.+..|++|-..++.++|..|-+++.. ..+- ......+++.+.+-+|...++=..-|.+++..+.-+.+-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~---~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLR---MMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHH---HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccccc---HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 34788999999999999999999988888775 2221 123577888888888655555567899999988766554
Q ss_pred CCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHH
Q 014240 113 GENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (428)
Q Consensus 113 ~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~A 192 (428)
+++-|.-+...|..+++ ..+.-.+-.++..||.+ -+.. ..-..++++..++.+ .++.+-+|
T Consensus 109 ---~~~~y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl-kv~~----~~~~V~~~l~sLl~S----------kd~~vK~a 169 (265)
T 3b2a_A 109 ---GSKTFLKAAKTLVSLLE-SPDDMMRIETIDVLSKL-QPLE----DSKLVRTYINELVVS----------PDLYTKVA 169 (265)
T ss_dssp ---CHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC-CBSC----CCHHHHHHHHHHHTC----------SSHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhCcC-Cccc----chHHHHHHHHHHHhC----------CChhHHHH
Confidence 46788888889999988 44445567778888887 2221 234678888888854 67899999
Q ss_pred HHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 193 AL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
||.+..=+.+.-.+.. +|...+.-++++|.+.|.-++-- +|..+.++.
T Consensus 170 gl~~L~eia~~S~D~~----i~~~I~~eI~elL~~eD~~l~e~---aLd~Le~il 217 (265)
T 3b2a_A 170 GFCLFLNMLNSSADSG----HLTLILDEIPSLLQNDNEFIVEL---ALDVLEKAL 217 (265)
T ss_dssp HHHHHHHHGGGCSSCC----CGGGTTTTHHHHHTCSCHHHHHH---HHHHHHHHT
T ss_pred HHHHHHHhhcccCCHH----HHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHH
Confidence 9988766666554443 34466667899999999988764 566667765
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.73 E-value=0.1 Score=55.39 Aligned_cols=187 Identities=13% Similarity=0.122 Sum_probs=117.3
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhh--hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~--~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
.+...+..|.......|..|+..|..+..... ...++ ....+..+.+.++.+..+.+..|+.++..++. +..+
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~~ 173 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR---LAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQE 173 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHH---HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHH---HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--cCcH
Confidence 45566777777777788999888877765421 11111 24567788888888888778888888887776 2212
Q ss_pred chHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCh-HHHHH--HHHHHHHHhccCCCCccccCCCCHHHH
Q 014240 115 NSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDP-EETER--TMQIMWQIVHPKLGSNVVATRPSAPII 190 (428)
Q Consensus 115 ~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~-~~~~~--~m~~l~~i~~~~~g~~~~a~~~~~~l~ 190 (428)
....+.+ ...|.|.+++.+.+....+..++.+|..+++ +... ..+.. .+..+..++. .+++.+.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~--~~~~~~~l~~~g~l~~L~~ll~----------~~~~~~~ 241 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHLT----------DPSQRLV 241 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--CTTHHHHHHHTTHHHHHHTTTT----------CSCHHHH
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHHh----------cCCHHHH
Confidence 2223333 4678888888877665666666666666553 1111 11111 1222333222 1356777
Q ss_pred HHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 191 TAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 191 ~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
..|+.+..-|....+... .....+|.|..+|.+++.+||..|..+|+-|.
T Consensus 242 ~~a~~~L~nL~~~~~~~~----~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQE----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp HHHHHHHHHHGGGCTTCC----SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhh----hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 777766666654433322 22478999999999999999999998887664
No 35
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.73 E-value=0.075 Score=47.45 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=102.4
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
..+...+..|.+.....|..|+..|...-. ...+..+.+.++..+..=+..|+.+++-+ |.
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~--- 110 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD------------ERAVEPLIKALKDEDGWVRQSAAVALGQI----GD--- 110 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC---
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc---
Confidence 356667778888888889999876654311 22344555667666666667777777765 32
Q ss_pred hHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHH
Q 014240 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~ 195 (428)
....|.|...+.+ .+..+|..++.+|+-+ + +.+ .+..+...+. .+++.|..+|+.
T Consensus 111 -----~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~---~--~~~----~~~~L~~~l~----------d~~~~vr~~a~~ 165 (211)
T 3ltm_A 111 -----ERAVEPLIKALKD-EDWFVRIAAAFALGEI---G--DER----AVEPLIKALK----------DEDGWVRQSAAD 165 (211)
T ss_dssp -----GGGHHHHHHHTTC-SSHHHHHHHHHHHHHH---C--CGG----GHHHHHHHTT----------CSSHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhC-CCHHHHHHHHHHHHHc---C--CHH----HHHHHHHHHc----------CCCHHHHHHHHH
Confidence 1356777777643 4567888889898765 2 222 2333444442 256788888888
Q ss_pred HHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 196 aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
+-+-+- . ...++.|..+|+.++..||.+|-++|.-+..-
T Consensus 166 aL~~~~---------~---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 166 ALGEIG---------G---ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHC---------S---HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHhC---------c---hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 877662 1 36778899999999999999999998766443
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.72 E-value=0.054 Score=56.14 Aligned_cols=194 Identities=11% Similarity=0.108 Sum_probs=115.1
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhh--hhhhhhHhHHHHHHHhhhcCCC-HHHHHHHHHHHhHheeecCC
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQH--QFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVGY 112 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~--~fi~~~~~TL~~~~~~sikkg~-~~E~~lA~~~l~Ll~l~lg~ 112 (428)
..+++++..+.-.-...+..|+..++++|+..-.+ +.+ ...-++..+.+.++++. ..-+..|+.+++-++. |.
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~i--i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~--~~ 151 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNI--IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GT 151 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHH--HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHH--HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHc--CC
Confidence 35788899888777778899999999988643222 222 12456777888887766 4556678888777764 32
Q ss_pred CCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHhccCCCCccccCCCC
Q 014240 113 GENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPS 186 (428)
Q Consensus 113 ~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~-----m~~l~~i~~~~~g~~~~a~~~~ 186 (428)
.+....|.+ ...|+|..++.++ +...+..|++||+-++ +.+++--... +..+..++...+.. ...
T Consensus 152 ~~~~~~vv~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa---~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~-----~~~ 222 (529)
T 3tpo_A 152 SEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIA---GAGSAFRDLVIKHGAIDPLLALLAVPDLS-----TLA 222 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHH---TTCHHHHHHHHHTTCHHHHHHTTCSSCGG-----GSC
T ss_pred HHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHh---ccCHHHHHHHHHcCCcHHHHHHHhccchh-----HhH
Confidence 222344554 4789998877654 4556677888887664 3333221111 22233333321100 011
Q ss_pred HHHHHHHHHHHHHhHhcCCC-CccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 187 APIITAMVSAWSFLLTTMDG-CSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 187 ~~l~~AAL~aW~lLlT~~~~-~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
..+... -+|++--..... ...........+|.|..+|.+++.+|+..|.-+|+-+.
T Consensus 223 ~~~~~~--a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~ 279 (529)
T 3tpo_A 223 CGYLRN--LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 279 (529)
T ss_dssp HHHHHH--HHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 222222 234333222111 11111344678999999999999999999998887665
No 37
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.69 E-value=0.14 Score=51.88 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=115.6
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhh--hhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNT--LQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~--~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
.+...+..|.......|..|+..|..+.... ....++ ....+..+.+.++.++.+-+..++.++..++. +..+
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~---~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--~~~~ 176 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR---LAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQE 176 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH---HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHH---HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--CCHH
Confidence 4555667777777778888888887765532 111111 24566777788877776667777777776665 3212
Q ss_pred chHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCh-HHHH--HHHHHHHHHhccCCCCccccCCCCHHHH
Q 014240 115 NSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDP-EETE--RTMQIMWQIVHPKLGSNVVATRPSAPII 190 (428)
Q Consensus 115 ~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~-~~~~--~~m~~l~~i~~~~~g~~~~a~~~~~~l~ 190 (428)
....+.+ ...|.|.+++.+++....+..++.+|..++. +.+. ..+. ..+..+..++. .+++.+.
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~~~~L~~ll~----------~~~~~~~ 244 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHLT----------DPSQRLV 244 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--STTHHHHHHHTTHHHHHHTTTT----------SSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHHh----------CCChHHH
Confidence 2233333 4678888888887766666666666655542 1111 1111 11222333222 2456788
Q ss_pred HHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 191 TAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 191 ~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
..|+.+.+-|....+.... ....+|.|..+|.+++.+||..|..+|+-|.
T Consensus 245 ~~a~~~L~~l~~~~~~~~~----~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 245 QNCLWTLRNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp HHHHHHHHHHHTTCTTCSC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCChhhHH----HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 8887776666655433322 2478999999999999999999988887763
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.038 Score=60.60 Aligned_cols=183 Identities=11% Similarity=0.080 Sum_probs=106.9
Q ss_pred hcccchHHHHHHHHHHHHHHHh-hhhhhhhhhhHhHHHHHHHhhhcCCCHHH---HHHHHHHHhHheeecCCCCchHHHH
Q 014240 45 LYEKRGSTREKALSSIIEAFNN-TLQHQFVEKKFATLLHQCLSSIKRGSSRE---IALASHAIGLLALTVGYGENSREIL 120 (428)
Q Consensus 45 l~eKr~stR~~aL~~l~~al~~-~~~~~fi~~~~~TL~~~~~~sikkg~~~E---~~lA~~~l~Ll~l~lg~~~~~eei~ 120 (428)
+.--....|+.|...|..+-.. ......+. .-.+..++..++.|+..+ +..|+++++=+.++..+ ..+|
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d~~~R~~lvq---qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np----~~~f 538 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ---QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP----GLIF 538 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH---TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH----HHHS
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH---CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH----HHHc
Confidence 3333456688888766554221 11112222 344556677777775432 56788888888776642 2222
Q ss_pred -----HhhhHHHHHHhhcCCCh-------------HHHHHHHHHHHHHHHHcCCChHHHH-HH------HHHHHHHhccC
Q 014240 121 -----EESVAPISQALKSGFDS-------------SKIASLLECLAVITFVGGNDPEETE-RT------MQIMWQIVHPK 175 (428)
Q Consensus 121 -----~~~~~~L~~~l~d~s~~-------------~~r~~~~~aLai~~fv~~~d~~~~~-~~------m~~l~~i~~~~ 175 (428)
-+..|+|..++..++.. ..+..++.||+-++-...++.+++. .. +..+...+.+
T Consensus 539 ~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s- 617 (778)
T 3opb_A 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD- 617 (778)
T ss_dssp SSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC-
T ss_pred CCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC-
Confidence 16789999998832211 1255666666655544322223332 22 3334443322
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHhHhcCCC--Cccch-h--hHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 176 LGSNVVATRPSAPIITAMVSAWSFLLTTMDG--CSLDS-K--KWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 176 ~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~--~~~~~-~--~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
+++.|..||+..++-|.+.-.. .++.. + ....-++.|+.|++++|.++|.||+-+||.+-
T Consensus 618 ---------~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 618 ---------ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp ---------SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 5568999999999999974332 12211 1 11123888999999999999999999999984
No 39
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.45 E-value=0.25 Score=45.31 Aligned_cols=150 Identities=11% Similarity=0.078 Sum_probs=102.7
Q ss_pred hhHHHHHHHhc-ccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC
Q 014240 36 TLLDEALDALY-EKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 36 ~~l~~~id~l~-eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
..+......+. ++....|..|+..+..+.. .+.+. +......++..++..++-.+..=+..|..++.-++-..+
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~-~l~~~-~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--- 130 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAK-GLAKR-FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--- 130 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-HHGGG-GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HHhhh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---
Confidence 34555566674 8888899999988866553 34443 466778999999999977665555666666665554433
Q ss_pred chHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHH
Q 014240 115 NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGN---DPEETERTMQIMWQIVHPKLGSNVVATRPSAPIIT 191 (428)
Q Consensus 115 ~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~---d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~ 191 (428)
++.+.|.|...+.+. ++..|..++..|+.+.--.+. ....+..+|..+...+. ...+.|..
T Consensus 131 -----~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~----------D~~~~VR~ 194 (242)
T 2qk2_A 131 -----LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN----------EPDPTVRD 194 (242)
T ss_dssp -----HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT----------SSCHHHHH
T ss_pred -----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc----------CCChHHHH
Confidence 456778887777754 678888888777765333221 22345567777776663 25678999
Q ss_pred HHHHHHHHhHhcCCC
Q 014240 192 AMVSAWSFLLTTMDG 206 (428)
Q Consensus 192 AAL~aW~lLlT~~~~ 206 (428)
+|..+.+.+...++.
T Consensus 195 ~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 195 SSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCH
Confidence 999999999988764
No 40
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.36 E-value=0.076 Score=58.68 Aligned_cols=186 Identities=12% Similarity=0.087 Sum_probs=114.0
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchH
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~e 117 (428)
+.-++..|.......|+.|...|..+-...-.-..+- ..-.+..++..++.|+..=+..|+.+++-++....+ +
T Consensus 497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv--~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p----~ 570 (810)
T 3now_A 497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVV--QEGGVKALLRMALEGTEKGKRHATQALARIGITINP----E 570 (810)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHH--HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh----h
Confidence 3445666666777889998888776632211111121 123455566667778755577888888887765332 2
Q ss_pred HHH-----HhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHH-----HHHHHhccCCCCccccCCCCH
Q 014240 118 EIL-----EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQ-----IMWQIVHPKLGSNVVATRPSA 187 (428)
Q Consensus 118 ei~-----~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~-----~l~~i~~~~~g~~~~a~~~~~ 187 (428)
.+| .+..|+|..++........+..++.||+ -++..+++.....++ .+..++.+ +++
T Consensus 571 ~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~---NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s----------~~~ 637 (810)
T 3now_A 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT---NLASMNESVRQRIIKEQGVSKIEYYLME----------DHL 637 (810)
T ss_dssp HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHH---HHTTSCHHHHHHHHHTTHHHHHHHHHHS----------CCT
T ss_pred hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHH---HHhcCCHHHHHHHHHcCCHHHHHHHHcC----------CCH
Confidence 221 2478999998874434344444555554 443333332222222 23333332 445
Q ss_pred HHHHHHHHHHHHhHhcCCCCccchhhH--HhhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 188 PIITAMVSAWSFLLTTMDGCSLDSKKW--QQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 188 ~l~~AAL~aW~lLlT~~~~~~~~~~~~--~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
.|..+|+.+.+-|.+.-+ ....+. ...++.|+.+|++++.++|.+|+-+||-|-.
T Consensus 638 ~Vq~~A~~~L~NLa~~~~---~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 638 YLTRAAAQCLCNLVMSED---VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp THHHHHHHHHHHHTTSHH---HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChH---HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 789999999998876321 111223 2578999999999999999999999999975
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.35 E-value=0.066 Score=50.07 Aligned_cols=131 Identities=9% Similarity=-0.031 Sum_probs=85.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHH
Q 014240 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEE 160 (428)
Q Consensus 81 ~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~ 160 (428)
++.+...++.+...-+..|+.+++-+. . ....|.|...+.+. ++..|..++.+|+-+ +. ....
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~--------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l---~~-~~~~ 87 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----G--------QDAVRLAIEFCSDK-NYIRRDIGAFILGQI---KI-CKKC 87 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----C--------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHS---CC-CTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----C--------chHHHHHHHHHcCC-CHHHHHHHHHHHHHh---cc-cccc
Confidence 345556676666777778888887654 1 23567777777654 567888888888654 32 2223
Q ss_pred HHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHH
Q 014240 161 TERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240 (428)
Q Consensus 161 ~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEai 240 (428)
+...+..+...... .+++.|..+|+.+-+-+-...+ ......++.|..+|.+++..||.+|..+|
T Consensus 88 ~~~l~~~L~~~~~~---------d~~~~vr~~a~~aL~~l~~~~~------~~~~~~~~~L~~~l~d~~~~vR~~a~~aL 152 (280)
T 1oyz_A 88 EDNVFNILNNMALN---------DKSACVRATAIESTAQRCKKNP------IYSPKIVEQSQITAFDKSTNVRRATAFAI 152 (280)
T ss_dssp HHHHHHHHHHHHHH---------CSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHhccCC------cccHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33445554432222 2567888888887776643221 12246789999999999999999999988
Q ss_pred HHH
Q 014240 241 ALI 243 (428)
Q Consensus 241 ALl 243 (428)
+-+
T Consensus 153 ~~~ 155 (280)
T 1oyz_A 153 SVI 155 (280)
T ss_dssp HTC
T ss_pred Hhc
Confidence 743
No 42
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.14 E-value=0.31 Score=53.29 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=112.5
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhh-hhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQ-HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~-~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
.+...++.|.......|..|+..|..+...... ...+ .....+..+.+.++.+..+-+..|+.++..++. +..+.
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v--~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~ 310 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV--RLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQES 310 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH--HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH--HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHH
Confidence 455566777777777788888888776654211 1111 113466677778877766656777778877765 22111
Q ss_pred hHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHH--HHHHHHHHHhccCCCCccccCCCCHHHHHH
Q 014240 116 SREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE--RTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (428)
Q Consensus 116 ~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~--~~m~~l~~i~~~~~g~~~~a~~~~~~l~~A 192 (428)
...+.+ ...|.|.+++.+++....+..++.+|..++. +......+. ..+..+..++. ..++.++..
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~----------~~~~~~~~~ 379 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLT----------DPSQRLVQN 379 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTT----------CSCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHc----------CCchHHHHH
Confidence 222222 4667788888877665555566666666653 221111111 11223333332 134567777
Q ss_pred HHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 193 AL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
|+.+..-|....+.... ....+|.|..+|.+.+..||..|..+|+-|.
T Consensus 380 a~~~L~~L~~~~~~~~~----~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 380 CLWTLRNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp HHHHHHHHHTTCTTCSC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccchhhhh----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 75555555544433222 2478999999999999999999988887663
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.86 E-value=0.06 Score=47.80 Aligned_cols=145 Identities=16% Similarity=0.188 Sum_probs=89.8
Q ss_pred HHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHH
Q 014240 84 CLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE 162 (428)
Q Consensus 84 ~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~ 162 (428)
+.+.++.++..-+..|+.+++-++..-. +....+.+ ...|.|.+.+.++ +...+..++.+|+-++. .+++...
T Consensus 17 l~~LL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~---~~~~~~~ 90 (210)
T 4db6_A 17 MVQQLNSPDQQELQSALRKLSQIASGGN--EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS---GGNEQIQ 90 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT---SCHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhc---CCcHHHH
Confidence 4445555667777888888888764222 22233333 4788898888876 56677777777766542 3333322
Q ss_pred HHH-----HHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHH
Q 014240 163 RTM-----QIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAA 236 (428)
Q Consensus 163 ~~m-----~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAA 236 (428)
..+ ..+..++.. +++.+...|+.+-+-|...-+. .. .... ...+|.|..+|.+++..||..|
T Consensus 91 ~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~-~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a 158 (210)
T 4db6_A 91 AVIDAGALPALVQLLSS----------PNEQILQEALWALSNIASGGNE-QI-QAVIDAGALPALVQLLSSPNEQILQEA 158 (210)
T ss_dssp HHHHTTCHHHHHHHTTC----------SCHHHHHHHHHHHHHHTTSCHH-HH-HHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcC----------CcHHHHHHHHHHHHHHHcCCHH-HH-HHHHHcCcHHHHHHHHcCCCHHHHHHH
Confidence 222 334444432 4567777777666665542111 11 1111 3568999999999999999999
Q ss_pred HHHHHHHHHh
Q 014240 237 GEALALILET 246 (428)
Q Consensus 237 GEaiALl~E~ 246 (428)
..+|+-+..-
T Consensus 159 ~~aL~~l~~~ 168 (210)
T 4db6_A 159 LWALSNIASG 168 (210)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHcC
Confidence 9999888653
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.74 E-value=0.74 Score=48.35 Aligned_cols=192 Identities=14% Similarity=0.155 Sum_probs=114.8
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
..+......|.++....|..|...+..++... ++.+.+ ..+++.+...+.-....=+.-|+.+++-++-.-+..-
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~- 195 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN- 195 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC-
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc-
Confidence 44555777888899999999998888777632 233321 3567777777754444435566666666554432100
Q ss_pred hHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHH
Q 014240 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~ 195 (428)
--.+.....+.|.+.+.+ .++-.++.++.+| ..++..++.+....++.+...+.. .++.|+-+|+.
T Consensus 196 ~~~l~~~~~~~Ll~~l~~-~~~~~q~~il~~l---~~l~~~~~~~~~~~l~~l~~~l~~----------~~~~V~~ea~~ 261 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNE-CTEWGQIFILDCL---SNYNPKDDREAQSICERVTPRLSH----------ANSAVVLSAVK 261 (591)
T ss_dssp SCCCHHHHHHHHHHHHHH-CCHHHHHHHHHHH---HTSCCCSHHHHHHHHHHHTTCSCS----------STTHHHHHHHH
T ss_pred chhccHHHHHHHHHcCCC-CCchHHHHHHHHH---HHhCCCChHHHHHHHHHHHHHHcC----------CChHHHHHHHH
Confidence 001111223333333333 3444445555544 556666666666666665543322 45689999999
Q ss_pred HHHHhHhcCC-CCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 196 AWSFLLTTMD-GCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 196 aW~lLlT~~~-~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
+|.-+...++ +............+.|..+++ ++.+||.+|-++|+.+....
T Consensus 262 ~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 262 VLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKR 313 (591)
T ss_dssp HHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhC
Confidence 9888765442 222222234456677777664 88999999999999998753
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.67 E-value=0.66 Score=48.76 Aligned_cols=145 Identities=15% Similarity=0.195 Sum_probs=86.1
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChH
Q 014240 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE 159 (428)
Q Consensus 80 L~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~ 159 (428)
++..+.+.+....+.-+.+|+++++-+. . .++.+.+.|.+.+.+.| .++.+|..|+.||+-+.-.+.+-..
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~----~~~~~~l~~~l~~~L~d-~~~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR----V----DKITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC----S----GGGHHHHHHHHHHHSSC-SCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC----h----HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhhChhhcc
Confidence 3455666665555666788888777653 2 36778888999888875 4678888888888766553322221
Q ss_pred HHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCC--------------------------------
Q 014240 160 ETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGC-------------------------------- 207 (428)
Q Consensus 160 ~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~-------------------------------- 207 (428)
+ ...++.+...+.. +++.|..+|+.+.+-+...-+..
T Consensus 158 ~-~~~~~~l~~lL~d----------~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l 226 (591)
T 2vgl_B 158 D-QGFLDSLRDLIAD----------SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCL 226 (591)
T ss_dssp H-HHHHHHHHHTTSC----------SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred c-ccHHHHHHHHhCC----------CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 1 1344444444421 33445555554444433221110
Q ss_pred ----ccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 208 ----SLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 208 ----~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
..........++.+..+|.+.+..|+.+|..+|.-+.
T Consensus 227 ~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 227 SNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp HTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred HHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 0011223456788888899999999998888776653
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.26 E-value=0.4 Score=49.57 Aligned_cols=191 Identities=13% Similarity=0.078 Sum_probs=110.2
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhh-hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~-~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
+.-.+..|.......+..|+..|........ ....+. ..-++..+...++.++..=+.-|+++++-++- +.....
T Consensus 253 lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~--~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~--~~~~~~ 328 (529)
T 3tpo_A 253 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV--KKGVVPQLVKLLGATELPIVTPALRAIGNIVT--GTDEQT 328 (529)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH--TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT--SCHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHH--hccchHHHHHHhcCCChhHHHHHHHHHHHHHc--cchHHH
Confidence 3334445556666777777766654433211 111111 12345556666766666667778888877653 322222
Q ss_pred HHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHH-----HHHHHhccCCCCccccCCCCHHHH
Q 014240 117 REILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQ-----IMWQIVHPKLGSNVVATRPSAPII 190 (428)
Q Consensus 117 eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~-----~l~~i~~~~~g~~~~a~~~~~~l~ 190 (428)
..+.+ ...|+|..++.++ +...|..++++|+-++ +...+-....++ .+..++.+ ++..+.
T Consensus 329 ~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~---~~~~~~~~~v~~~g~i~~Lv~lL~~----------~~~~v~ 394 (529)
T 3tpo_A 329 QKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNIT---AGRQDQIQQVVNHGLVPFLVGVLSK----------ADFKTQ 394 (529)
T ss_dssp HHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHH---TSCHHHHHHHHHTTHHHHHHHHHHS----------SCHHHH
T ss_pred HHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHh---cccHHHHHHHHhcCcHHHHHHHhcC----------CCHHHH
Confidence 33333 4788888888754 4456667777776554 333433332222 23333332 445677
Q ss_pred HHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 191 TAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 191 ~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
..|..+-+-|.+..+...+. .++ ...++.|..+|.+.|..|+..+-++|.-|+..+
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~-~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHH-HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHH-HHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 77655555455433322211 122 256999999999999999999999999888776
No 47
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.07 E-value=0.82 Score=51.21 Aligned_cols=167 Identities=17% Similarity=0.128 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHH
Q 014240 51 STREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQA 130 (428)
Q Consensus 51 stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~ 130 (428)
..|..|--+|-.++ +....+.+++.+...+...+..=...|+-++|++-+ |.|. +++.+.++..+
T Consensus 452 ~ir~gAaLGLGla~--------~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~v--GTgn--~~ai~~LL~~~--- 516 (963)
T 4ady_A 452 VLLHGASLGIGLAA--------MGSANIEVYEALKEVLYNDSATSGEAAALGMGLCML--GTGK--PEAIHDMFTYS--- 516 (963)
T ss_dssp HHHHHHHHHHHHHS--------TTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCCC--HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc--ccCC--HHHHHHHHHHH---
Confidence 45666555655442 222334555556665654443223356666666544 5542 45555444433
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHH------------HHHHhccCCCCcc--------ccCCCCHHH
Q 014240 131 LKSGFDSSKIASLLECLAVITFVGGN-DPEETERTMQI------------MWQIVHPKLGSNV--------VATRPSAPI 189 (428)
Q Consensus 131 l~d~s~~~~r~~~~~aLai~~fv~~~-d~~~~~~~m~~------------l~~i~~~~~g~~~--------~a~~~~~~l 189 (428)
.+..+...|..++.+||++ ++|.. ..+.+.+.|.- ...+.+...|.+- .....+..|
T Consensus 517 -~e~~~e~vrR~aalgLGll-~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~V 594 (963)
T 4ady_A 517 -QETQHGNITRGLAVGLALI-NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDV 594 (963)
T ss_dssp -HHCSCHHHHHHHHHHHHHH-TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHH
T ss_pred -hccCcHHHHHHHHHHHHhh-hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHH
Confidence 2333445556667777766 33322 22333333220 1111121112210 001234578
Q ss_pred HHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHh-hhcCCChHHHHHHHHHHHHHH
Q 014240 190 ITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFST-LLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 190 ~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~-lL~s~d~~VRiAAGEaiALl~ 244 (428)
..+|+-|.|+++..-+ +.+|++.. ++++.|..||-+|..++++++
T Consensus 595 RraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 595 RRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp HHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 8899999998864421 33566776 456789999999999999985
No 48
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.21 Score=46.98 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=83.4
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
...+-.+++.+.+|+...|.++-..+...+.+ .-+..+......+++.+...++..+...+..++.+++-++-+.+...
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence 34567788999999999988877665444443 21111111256788888888887787788888888888887766321
Q ss_pred ch-HHHH-HhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 014240 115 NS-REIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGN 156 (428)
Q Consensus 115 ~~-eei~-~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~ 156 (428)
.. ...+ ..+.|.|.+.+.|. ++.+|.+|..||+.++-+.|+
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCH
Confidence 11 1345 78889998888554 778999999999988866554
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.40 E-value=1.1 Score=47.38 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=73.5
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
..+......|..++...|.+|...+...+... ++.++ .+++.+...+......=+..|+.+++-++-.-+ +
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~---~ 212 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV--PELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP---D 212 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH---H
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh---H
Confidence 34555666777788888999888888777643 33332 344444555544444445566666666543211 1
Q ss_pred hHHHHHhhhHHHHHHhhc--------------CCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcc
Q 014240 116 SREILEESVAPISQALKS--------------GFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHP 174 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d--------------~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~ 174 (428)
....|..+.|.|.+++.+ ..++-.+..++.+|+ .++..+++.....++++..++.+
T Consensus 213 ~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~---~l~~~~~~~~~~~~~~L~~l~~~ 282 (618)
T 1w63_A 213 MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLR---ILGRNDDDSSEAMNDILAQVATN 282 (618)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHH---HHTTTCHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHhc
Confidence 234677777877766654 234545555555554 45556666555566666666543
No 50
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.20 E-value=0.23 Score=41.30 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=59.4
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhc
Q 014240 124 VAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTT 203 (428)
Q Consensus 124 ~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~ 203 (428)
.|.|...+.| .++.+|..++.+||-+ + +...+...++.+ .. +++.|..+|+.+.+-+-
T Consensus 44 ~~~L~~~L~d-~~~~vR~~A~~aL~~~---~--~~~a~~~L~~~L----~d----------~~~~VR~~A~~aL~~~~-- 101 (131)
T 1te4_A 44 FEPLLESLSN-EDWRIRGAAAWIIGNF---Q--DERAVEPLIKLL----ED----------DSGFVRSGAARSLEQIG-- 101 (131)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHGGG---C--SHHHHHHHHHHH----HH----------CCTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHhc---C--CHHHHHHHHHHH----cC----------CCHHHHHHHHHHHHHhC--
Confidence 3777787775 5678899988888654 2 233333333333 21 45678888877766542
Q ss_pred CCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHH
Q 014240 204 MDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (428)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiA 241 (428)
. ...++.|..+|+++|..||.+|.++|+
T Consensus 102 -------~---~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 102 -------G---ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -------S---HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -------c---HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1 267899999999999999999998875
No 51
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.18 E-value=2 Score=42.39 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=104.9
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHh---hhhhhhhhhhHhHHHHHHHhhhc-CCCHHHHHHHHHHHhHheeecCCC
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNN---TLQHQFVEKKFATLLHQCLSSIK-RGSSREIALASHAIGLLALTVGYG 113 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~---~~~~~fi~~~~~TL~~~~~~sik-kg~~~E~~lA~~~l~Ll~l~lg~~ 113 (428)
+...+..|.......++.|...|...-.. ......++ .-.+..+.+.+. .++.+-+..|+.++.-|+....
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~---~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-- 203 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE---VGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-- 203 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH---TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH---CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh--
Confidence 44444555544555566665555433211 01111111 123444555433 3455555666777766654221
Q ss_pred CchHHHH--HhhhHHHHHHhhcCCCh---HHHHHHHHHHHHHHHHcCCChHHHHHHH-----HHHHHHhccCCCCccccC
Q 014240 114 ENSREIL--EESVAPISQALKSGFDS---SKIASLLECLAVITFVGGNDPEETERTM-----QIMWQIVHPKLGSNVVAT 183 (428)
Q Consensus 114 ~~~eei~--~~~~~~L~~~l~d~s~~---~~r~~~~~aLai~~fv~~~d~~~~~~~m-----~~l~~i~~~~~g~~~~a~ 183 (428)
+.-..|. ....|+|.+++..+++. ..+..++.+|.-++.+.+.+++...... ..+..++.+
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~--------- 274 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--------- 274 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC---------
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC---------
Confidence 1234554 46889999999876654 4566777788877754333444333222 234444432
Q ss_pred CCCHHHHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 184 RPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 184 ~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
++..+...|+.+-+-|.+. .......++ ...+|.|..+|.+.+..+|..|..+|.-|..-
T Consensus 275 -~~~~v~~~A~~aL~nLa~~--~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 275 -HSLTIVSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp -SCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred -CChHHHHHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 4455666665554444322 111111222 35689999999999999999999888877654
No 52
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.07 E-value=1.7 Score=45.88 Aligned_cols=190 Identities=7% Similarity=0.050 Sum_probs=109.6
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCC-CHHHHHHHHHHHhHheeecCCCCc
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG-SSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg-~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
.+...+..|......+|+.|+..|...-...- .....-.....+..+.+.++.+ ..+-+..|+.++..++..-. .
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~---~ 90 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE---G 90 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH---H
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh---h
Confidence 36667778888888899999988876644321 1100001135667777778776 46667778888876665321 2
Q ss_pred hHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHH--HHHHHHHHHHhccCCCCccccCCCCHHHHHH
Q 014240 116 SREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEET--ERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (428)
Q Consensus 116 ~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~--~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~A 192 (428)
...+++ ...|.|.+++.+. +...+..++.+|+-++.........+ ...+..+..++.. +++.+.++
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~----------~~~~~~~~ 159 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----------TNVKFLAI 159 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----------CCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc----------CCHHHHHH
Confidence 344444 3778888888765 46777888888887776642211111 1234445555543 23456655
Q ss_pred HHHHHHHhHhcCCCCccchhh-HHhhHHHHHhhhcCCC-hHHHHHHHHHHHHH
Q 014240 193 MVSAWSFLLTTMDGCSLDSKK-WQQSISYFSTLLDKDD-RSIRIAAGEALALI 243 (428)
Q Consensus 193 AL~aW~lLlT~~~~~~~~~~~-~~~~l~~L~~lL~s~d-~~VRiAAGEaiALl 243 (428)
|+.+-..|...-+.. ...+ -...++.|..+|.+.+ ..++-+|..+|..+
T Consensus 160 a~~~L~~La~~~~~~--~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL 210 (644)
T 2z6h_A 160 TTDCLQILAYGNQES--KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210 (644)
T ss_dssp HHHHHHHHHTTCHHH--HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHH--HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 544444333211111 1011 1256899999998764 55666666665443
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.66 E-value=1.1 Score=49.41 Aligned_cols=195 Identities=9% Similarity=-0.009 Sum_probs=122.0
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC-
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE- 114 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~- 114 (428)
-.+..++..+..+....++.|+..+..+.......++|-+.-. +.+...++.+...=+.+|+-+++=++.-.+...
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv---~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~ 366 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV---DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAA 366 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH---HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTS
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc---HHHHHHHcCCCHHHHHHHHHHHHHhccccccCcc
Confidence 3567788888888888899999999888777666677765443 555555555554335677777777654222110
Q ss_pred ---chHHHHHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHcCCChHHHH---HHHHHHHHHhccCCCCccccCCCCH
Q 014240 115 ---NSREILEESVAPISQALKSGF-DSSKIASLLECLAVITFVGGNDPEETE---RTMQIMWQIVHPKLGSNVVATRPSA 187 (428)
Q Consensus 115 ---~~eei~~~~~~~L~~~l~d~s-~~~~r~~~~~aLai~~fv~~~d~~~~~---~~m~~l~~i~~~~~g~~~~a~~~~~ 187 (428)
-.+.-.+.+.|.|.+.+..+. +...+..++.+|+-++.-... -+.+. ..+..|..++.+ +++
T Consensus 367 ~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v-k~~lv~d~g~Ip~LV~LL~s----------~d~ 435 (810)
T 3now_A 367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC-KEKLIEDKASIHALMDLARG----------GNQ 435 (810)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH-HHHHHHCHHHHHHHHHHHHT----------TCG
T ss_pred ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH-HHHHHHccchHHHHHHHhCC----------CCh
Confidence 011123457788888888763 667778888888655432110 01111 233345555543 345
Q ss_pred HHHHHHHHHHHHhHhcCCCCc---------------c-----------c----hhhH-HhhHHHHHhhhcCCChHHHHHH
Q 014240 188 PIITAMVSAWSFLLTTMDGCS---------------L-----------D----SKKW-QQSISYFSTLLDKDDRSIRIAA 236 (428)
Q Consensus 188 ~l~~AAL~aW~lLlT~~~~~~---------------~-----------~----~~~~-~~~l~~L~~lL~s~d~~VRiAA 236 (428)
.+.-.|+.+.+=|.+.-+..+ + . ..++ ...+|.|+.+|.|++.+||-.|
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~A 515 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELI 515 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHH
Confidence 677788887777776332110 0 0 0111 2568999999999999999999
Q ss_pred HHHHHHHH
Q 014240 237 GEALALIL 244 (428)
Q Consensus 237 GEaiALl~ 244 (428)
..+|.-|-
T Consensus 516 a~aL~NLA 523 (810)
T 3now_A 516 ARVLNAVC 523 (810)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988774
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.52 E-value=0.88 Score=48.20 Aligned_cols=122 Identities=11% Similarity=0.133 Sum_probs=75.7
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChH
Q 014240 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE 159 (428)
Q Consensus 80 L~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~ 159 (428)
.+..+.+-++.+.+--+.+|+++++-++ . .++.+.+.|.+.+.+.+ +++.+|.+|+.|++-+.-.. ++
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~----~----~~~~~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~---p~ 175 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMG----S----SEMCRDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKV---PE 175 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHC----C----HHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHC---GG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcC----C----HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHC---hH
Confidence 4555666666566777899999999876 1 47888899999998887 45777888888887666543 33
Q ss_pred HHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhc
Q 014240 160 ETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD 226 (428)
Q Consensus 160 ~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~ 226 (428)
.+...++.+...+ ...++.|+.+|+.+.+-+...-+. . ...+...+|.|..+|.
T Consensus 176 ~v~~~~~~l~~lL----------~D~d~~V~~~Al~~L~~i~~~~~~--~-~~~~~~~v~~l~~~L~ 229 (618)
T 1w63_A 176 LMEMFLPATKNLL----------NEKNHGVLHTSVVLLTEMCERSPD--M-LAHFRKLVPQLVRILK 229 (618)
T ss_dssp GGGGGGGGTTTST----------TCCCHHHHHHHHHHHHHHCCSHHH--H-HHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----------CCCCHhHHHHHHHHHHHHHHhChH--H-HHHHHHHHHHHHHHHH
Confidence 3222221111111 136678999998877766532111 0 1234455666665553
No 55
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.43 E-value=1.2 Score=48.45 Aligned_cols=151 Identities=10% Similarity=0.127 Sum_probs=93.6
Q ss_pred hHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHH--HhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC
Q 014240 78 ATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREIL--EESVAPISQALKSGFDSSKIASLLECLAVITFVGG 155 (428)
Q Consensus 78 ~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~--~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~ 155 (428)
...+..+.+.++.+...-+..|+.+++-++.... ....+. ..+.|.|.+.+..+.+...|..++.+|.-+++...
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~---~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~ 225 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA---SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE 225 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH---HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh---hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence 3445556666666666667888888888876432 122333 25788888888877777788888888876544210
Q ss_pred CChHHHH--HHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHH
Q 014240 156 NDPEETE--RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSI 232 (428)
Q Consensus 156 ~d~~~~~--~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~V 232 (428)
. ...+. ..+..+..++.. +++.+...|+.+-+-|...-+... .... ...+|.|..+|.+++..|
T Consensus 226 ~-~~~i~~~g~I~~Lv~lL~~----------~~~~v~~~A~~aL~nLa~~~~~~~--~~v~~~g~v~~Lv~lL~~~~~~v 292 (780)
T 2z6g_A 226 G-LLAIFKSGGIPALVNMLGS----------PVDSVLFHAITTLHNLLLHQEGAK--MAVRLAGGLQKMVALLNKTNVKF 292 (780)
T ss_dssp H-HHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHHHSTTHH--HHHHHTTHHHHHHHGGGCCCHHH
T ss_pred h-HHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHhCCChhhH--HHHHHcCCHHHHHHHHhcCCHHH
Confidence 0 11111 123345554432 456777777777666665433221 1121 367899999999999999
Q ss_pred HHHHHHHHHHHH
Q 014240 233 RIAAGEALALIL 244 (428)
Q Consensus 233 RiAAGEaiALl~ 244 (428)
|..|..+|+.+.
T Consensus 293 ~~~a~~aL~~La 304 (780)
T 2z6g_A 293 LAITTDCLQILA 304 (780)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 988877776553
No 56
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.42 E-value=5.4 Score=44.17 Aligned_cols=133 Identities=8% Similarity=0.021 Sum_probs=83.5
Q ss_pred HHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhc-----CCChHHHHHHHHHHHHHHHHc--CC-ChH------HHH
Q 014240 97 ALASHAIGLLALTVGYGENSREILEESVAPISQALKS-----GFDSSKIASLLECLAVITFVG--GN-DPE------ETE 162 (428)
Q Consensus 97 ~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d-----~s~~~~r~~~~~aLai~~fv~--~~-d~~------~~~ 162 (428)
..|..++..++-..| +.+...+.+.+.+.+.. ..+-..|-+++.++|.++--+ +. ... ++.
T Consensus 379 ~aa~~~L~~l~~~~~-----~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 379 RACTDFLKELKEKNE-----VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp HHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred HHHHHHHHHHHHHcc-----hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 356667777776665 36676777777776662 223356778888888876322 22 111 333
Q ss_pred HHH-HHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHH
Q 014240 163 RTM-QIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (428)
Q Consensus 163 ~~m-~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiA 241 (428)
..+ +.+...+.... +..|-|..+|+..-+=..+.+ ..+.+...++.+...|.+++.-||.+|.-+|.
T Consensus 454 ~~l~~~v~p~l~~~~-------~~~p~vr~~a~~~lg~~~~~~-----~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~ 521 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNN-------IPHIILRVDAIKYIYTFRNQL-----TKAQLIELMPILATFLQTDEYVVYTYAAITIE 521 (960)
T ss_dssp HHHHHHTHHHHHCSS-------CSCHHHHHHHHHHHHHTGGGS-----CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhcCCC-------CCCceehHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 322 22222222100 136788888886555555543 34567788999998888888999999999999
Q ss_pred HHHHh
Q 014240 242 LILET 246 (428)
Q Consensus 242 Ll~E~ 246 (428)
-+.|.
T Consensus 522 ~~~~~ 526 (960)
T 1wa5_C 522 KILTI 526 (960)
T ss_dssp HHTTC
T ss_pred HHHhc
Confidence 88875
No 57
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.21 E-value=2.6 Score=41.67 Aligned_cols=154 Identities=11% Similarity=0.055 Sum_probs=82.8
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC-chHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCC
Q 014240 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE-NSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGND 157 (428)
Q Consensus 80 L~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~-~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d 157 (428)
.+..+.+.++.++.+=+..|+.++.-|+.. +.+ .-..|.+ ...|+|.+++....+...+..++.+|.-++..+...
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWR--ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--CCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhcc--CCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 467777888777766667777777777543 211 1234443 478889887665555555555666665544322111
Q ss_pred hHHHH---HHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhH---hcCCCCccchhhH-HhhHHHHHhhhcCCCh
Q 014240 158 PEETE---RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLL---TTMDGCSLDSKKW-QQSISYFSTLLDKDDR 230 (428)
Q Consensus 158 ~~~~~---~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLl---T~~~~~~~~~~~~-~~~l~~L~~lL~s~d~ 230 (428)
-..+. -.+..+..++...... ....+...|..+-.-|. +..+.. ...+. ...+|.|+.+|.+.+.
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~------~~~~v~~~A~~aL~nLs~~~a~~~~~--~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQT------NTLAIIESGGGILRNVSSLIATNEDH--RQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSS------SCCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHTTTHHHHHHHHTTCSCH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCc------ccHHHHHHHHHHHHHHHhhccCCHHH--HHHHHHcCCHHHHHHHHcCCCh
Confidence 11221 2344455555431100 11134433332222222 222221 11122 2468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014240 231 SIRIAAGEALALI 243 (428)
Q Consensus 231 ~VRiAAGEaiALl 243 (428)
.|+..|.-+|.-|
T Consensus 278 ~v~~~A~~aL~nL 290 (354)
T 3nmw_A 278 TIVSNACGTLWNL 290 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999887777766
No 58
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.09 E-value=0.73 Score=47.39 Aligned_cols=191 Identities=12% Similarity=0.066 Sum_probs=108.2
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhh-hhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~-~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
+.-.+..|.......|..|...|........ ....+. ..-++..+...++.++..=+.-|+++++-++. +.....
T Consensus 234 lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~--~~~~~~ 309 (510)
T 3ul1_B 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV--KKGVVPQLVKLLGATELPIVTPALRAIGNIVT--GTDEQT 309 (510)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH--TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT--SCHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHH--hcccchhhhhhhcCCChhhhhHHHHHHHHhhc--CCHHHH
Confidence 3344455566666777777766654432111 001110 12345566667767776667788888887653 322222
Q ss_pred HHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHH-----HHHHHHhccCCCCccccCCCCHHHH
Q 014240 117 REILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTM-----QIMWQIVHPKLGSNVVATRPSAPII 190 (428)
Q Consensus 117 eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m-----~~l~~i~~~~~g~~~~a~~~~~~l~ 190 (428)
..+.+ ...|+|..++.++ +...|..++.+|+-+ ++...+...... ..+..++.. ++..+.
T Consensus 310 ~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl---~a~~~~~~~~v~~~g~i~~Lv~lL~~----------~~~~v~ 375 (510)
T 3ul1_B 310 QKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNI---TAGRQDQIQQVVNHGLVPFLVGVLSK----------ADFKTQ 375 (510)
T ss_dssp HHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHH---TTSCHHHHHHHHHTTHHHHHHHHHHS----------SCHHHH
T ss_pred HHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHH---HcCcHHHHHHHHhcCCHHHHHHHHcC----------CCHHHH
Confidence 33333 4677777777643 345566666666544 333444333222 223333332 455677
Q ss_pred HHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 191 TAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 191 ~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
..|..+-+-|.+..+...+. .++ ...++.|..+|++.|..|+..+-++|.-|+..+
T Consensus 376 ~~Aa~aL~Nl~~~~~~~~~~-~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHHHHHHHHHHCCHHHHH-HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHH-HHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 66655544444433322211 122 356899999999999999999999999888776
No 59
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.94 E-value=1.5 Score=42.33 Aligned_cols=134 Identities=10% Similarity=0.069 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhHheeecCCCCchHHHHH-hhhHHHHH-HhhcCCChHHHHHHHHHHHHHHHHcCCChHHHH-----HHHH
Q 014240 94 REIALASHAIGLLALTVGYGENSREILE-ESVAPISQ-ALKSGFDSSKIASLLECLAVITFVGGNDPEETE-----RTMQ 166 (428)
Q Consensus 94 ~E~~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~-~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~-----~~m~ 166 (428)
+++..|+..+.-++-+.. .+..+.+ ...|+|.. .+.+ +++..|..+++|||.++ .+++.--. ..+.
T Consensus 55 e~k~~Al~~L~~lv~~~d---na~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia---~~n~~~~~~vv~~g~l~ 127 (296)
T 1xqr_A 55 QEREGALELLADLCENMD---NAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCS---QNVAAIQEQVLGLGALR 127 (296)
T ss_dssp HHHHHHHHHHHHHHTSHH---HHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHH---TTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhChh---hHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHH---hCCHHHHHHHHHCCCHH
Confidence 456677777776665443 3555554 46677777 7654 46688888999998765 23332211 2334
Q ss_pred HHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 014240 167 IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 167 ~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
.|+.++.+ .+++.+...|+.+-+-|...-++. ...+. ...+|.|..+|.+++..||..|.-+|+-+.-
T Consensus 128 ~Ll~LL~~---------~~~~~v~~~A~~ALsnl~~~~~~~--~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 128 KLLRLLDR---------DACDTVRVKALFAISCLVREQEAG--LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196 (296)
T ss_dssp HHHHHHHH---------CSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcc---------CCCHHHHHHHHHHHHHHHcCCcHH--HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 46666654 134678888876666665432221 11122 2579999999999999999999888887753
No 60
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=92.87 E-value=4.8 Score=41.29 Aligned_cols=159 Identities=10% Similarity=0.043 Sum_probs=85.2
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCC
Q 014240 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGND 157 (428)
Q Consensus 79 TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d 157 (428)
-.+..+.+-++.++.+=+..|+.++.-|+..-. .+.-..|.+ ...|+|.+++....+...+..++.+|.-++..+...
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC-HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 346777777877776556777777777764211 111234443 478888887665556655566666776665533211
Q ss_pred hHHHH---HHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcC-CCCccchhhH-HhhHHHHHhhhcCCChHH
Q 014240 158 PEETE---RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTM-DGCSLDSKKW-QQSISYFSTLLDKDDRSI 232 (428)
Q Consensus 158 ~~~~~---~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~-~~~~~~~~~~-~~~l~~L~~lL~s~d~~V 232 (428)
-..+. -.+..+..++...... ....+...|..+-.-|...+ ........+. ...+|.|+.+|.+.+..|
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~------~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v 395 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQT------NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSS------STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCc------chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHH
Confidence 12221 2344556655431100 11124333322222222111 1111111122 256899999999999999
Q ss_pred HHHHHHHHHHHH
Q 014240 233 RIAAGEALALIL 244 (428)
Q Consensus 233 RiAAGEaiALl~ 244 (428)
+..|.-+|+-|-
T Consensus 396 ~~~A~~aL~nLa 407 (458)
T 3nmz_A 396 VSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888877663
No 61
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=92.86 E-value=4.1 Score=41.77 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=91.0
Q ss_pred HHHHHhhhcC-CCHHHHHHHHHHHhHheeecCCCCchHHHH--HhhhHHHHHHhhcCCCh---HHHHHHHHHHHHHHHHc
Q 014240 81 LHQCLSSIKR-GSSREIALASHAIGLLALTVGYGENSREIL--EESVAPISQALKSGFDS---SKIASLLECLAVITFVG 154 (428)
Q Consensus 81 ~~~~~~sikk-g~~~E~~lA~~~l~Ll~l~lg~~~~~eei~--~~~~~~L~~~l~d~s~~---~~r~~~~~aLai~~fv~ 154 (428)
+..+.+.+.+ ++..-+..|+.++.-|+.... +....|. ....|+|.+++..+.+. ..+..++.+|.-++.+.
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~--~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCT--ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH--HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 4455554433 445556677777777765221 1234554 46889999999877654 45677788888777643
Q ss_pred CCChHHHHHHHH-----HHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCC
Q 014240 155 GNDPEETERTMQ-----IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKD 228 (428)
Q Consensus 155 ~~d~~~~~~~m~-----~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~ 228 (428)
+.+++......+ .+..++.. ++..+...|+.+-+-|.+. .......++ ...+|.|..+|.+.
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~----------~~~~v~~~A~~aL~nLa~~--~~~~~~~i~~~G~I~~Lv~LL~s~ 433 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKS----------HSLTIVSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSK 433 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSC----------SCHHHHHHHHHHHHHHHSS--CHHHHHHHHHHTHHHHHHTTTTCS
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcC----------CChHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhCC
Confidence 334443333332 23333322 4455666665555544432 111111222 35699999999999
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 014240 229 DRSIRIAAGEALALILET 246 (428)
Q Consensus 229 d~~VRiAAGEaiALl~E~ 246 (428)
+..+|..|..+|.=|..-
T Consensus 434 ~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 434 HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 999999999888877653
No 62
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=92.46 E-value=1.5 Score=44.07 Aligned_cols=145 Identities=11% Similarity=0.160 Sum_probs=90.6
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHH--hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCC
Q 014240 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE--ESVAPISQALKSGFDSSKIASLLECLAVITFVGGND 157 (428)
Q Consensus 80 L~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~--~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d 157 (428)
.+..+.+.++.+...-+..|+.++.-++..-. ....++. ...|+|.+.+..+.+...+..++.+|.-++ . +
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~---~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls---~-~ 90 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA---SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS---H-H 90 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH---HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT---T-S
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc---cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH---c-C
Confidence 45555566666667778888888888774322 2234443 578888888887777777777777776543 2 2
Q ss_pred hHHHHH-----HHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhH-HhhHHHHHhhhcCCChH
Q 014240 158 PEETER-----TMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRS 231 (428)
Q Consensus 158 ~~~~~~-----~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~s~d~~ 231 (428)
.+.... .+..+..++.. +++.+...|+.+-.-|...-+... ..+. ...+|.|..+|.+++..
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~--~~i~~~g~i~~L~~ll~~~~~~ 158 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGS----------PVDSVLFYAITTLHNLLLHQEGAK--MAVRLAGGLQKMVALLNKTNVK 158 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHHHCTTHH--HHHHHHTHHHHHHHGGGCCCHH
T ss_pred chhHHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHhcCCcchH--HHHHHcCCHHHHHHHHhcCCHH
Confidence 222111 22234444432 446777777777666665433221 1121 46799999999999999
Q ss_pred HHHHHHHHHHHH
Q 014240 232 IRIAAGEALALI 243 (428)
Q Consensus 232 VRiAAGEaiALl 243 (428)
+|..|..+|.-+
T Consensus 159 ~~~~~~~~L~~l 170 (529)
T 1jdh_A 159 FLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998887776644
No 63
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.29 E-value=9.1 Score=43.09 Aligned_cols=193 Identities=15% Similarity=0.144 Sum_probs=125.6
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCc
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~ 115 (428)
.+|++.+..++--....|..+-..|...+........+. ..+++.+.+.++..+.. .-|+-++.-+|-..|....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVP---EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC---HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccc---hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCC
Confidence 345555555554223445566666666666443333333 36788888888655433 4455667777766766444
Q ss_pred hHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHH
Q 014240 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~ 195 (428)
.|-++=.++|.+....-|... .+|.++. .|+-+++.+-.++.+...+..+...+.+ ....+.-.+||.
T Consensus 89 ~e~~~~~~~~~~~~~~~dk~~-~v~~aa~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~kw~~k~~~l~ 156 (986)
T 2iw3_A 89 VEPYIVQLVPAICTNAGNKDK-EIQSVAS--ETLISIVNAVNPVAIKALLPHLTNAIVE---------TNKWQEKIAILA 156 (986)
T ss_dssp THHHHHTTHHHHHHHTTCSSH-HHHHHHH--HHHHHHHHHSCGGGHHHHHHHHHHHHHH---------CCCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCCch-HHHHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHhcc---------ccchHHHHHHHH
Confidence 455555566666666555544 4444443 3455666666777777777777777754 245788899999
Q ss_pred HHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 196 aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
...=|....+ ..+ ...+.+.+|.+.+..-....+|..||..++-=++.+.
T Consensus 157 ~~~~~~~~~~-~~~-~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 157 AFSAMVDAAK-DQV-ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV 206 (986)
T ss_dssp HHHHHHHHSH-HHH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhH-HHH-HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC
Confidence 9998887663 222 3456788888888888889999999999998888765
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.12 E-value=9.5 Score=42.92 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=88.1
Q ss_pred hhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 014240 70 HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAV 149 (428)
Q Consensus 70 ~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai 149 (428)
++.+..+..+++..+..++---+.+=...|.+++.-+|-.++..| .+-+.|.|...+.+++. ...|+..|+.
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-----~~~~~~~~~~~~~~p~~---~~~~~~~l~~ 237 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-----IERFIPSLIQCIADPTE---VPETVHLLGA 237 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-----TGGGHHHHHHHHHCTTH---HHHHHHHHTT
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-----hhhhHHHHHHHhcChhh---hHHHHHHhhc
Confidence 445555667777777777766665556677777777777777542 12355666666665533 4667888888
Q ss_pred HHHHcCCChHHHHHHHH-HHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhc-C
Q 014240 150 ITFVGGNDPEETERTMQ-IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD-K 227 (428)
Q Consensus 150 ~~fv~~~d~~~~~~~m~-~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~-s 227 (428)
+|||...+..-+ ..|- ++..-+.-. + .+.+-.+.|++ .=+--++++......++...+|.|...-+ -
T Consensus 238 ~tfv~~v~~~~l-~~~~p~l~r~l~~~--~--~~~~r~~~~~~------~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~ 306 (986)
T 2iw3_A 238 TTFVAEVTPATL-SIMVPLLSRGLNER--E--TGIKRKSAVII------DNMCKLVEDPQVIAPFLGKLLPGLKSNFATI 306 (986)
T ss_dssp CCCCSCCCHHHH-HHHHHHHHHHHTSS--S--HHHHHHHHHHH------HHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC
T ss_pred CeeEeeecchhH-HHHHHHHHhhhccC--c--chhheeeEEEE------cchhhhcCCHHHHhhhhhhhhhHHHHHhhcc
Confidence 888877665332 2222 333322110 0 00000011111 11112333332222233334444444333 4
Q ss_pred CChHHHHHHHHHHHHHHHhcc
Q 014240 228 DDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 228 ~d~~VRiAAGEaiALl~E~~~ 248 (428)
.|+++|-.|..+++.|...+-
T Consensus 307 ~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 307 ADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp CSHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhhc
Confidence 589999999999999988764
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=87.34 E-value=18 Score=33.27 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=115.1
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCC--HHHHHHHHHHHhHheeecCC
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS--SREIALASHAIGLLALTVGY 112 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~--~~E~~lA~~~l~Ll~l~lg~ 112 (428)
++.|++.|..|++-==..|.+||.-|..+... .++-.+.+.+-++..+||.- +--|. -++++|.++.-=+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~------~~el~epl~~kL~vm~~ksEaIpltqe-Ia~a~G~la~i~P- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKT------REDLYEPMLKKLFSLLKKSEAIPLTQE-IAKAFGQMAKEKP- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT------CGGGHHHHHHHHHHHHHHCCSHHHHHH-HHHHHHHHHHHCH-
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHH------hHHHHHHHHHHHHHHHhhcccCchHHH-HHHHHhHHHHhCH-
Confidence 45788899999888777788898766544322 22334667777777777764 21122 2377787776433
Q ss_pred CCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHH
Q 014240 113 GENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (428)
Q Consensus 113 ~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~A 192 (428)
++.+.+.|.|..-..-+ ++..|....++|+=+.-. .|+-.-....-+....+++ + ..=-.+
T Consensus 103 -----e~v~~vVp~lfanyrig-d~kikIn~~yaLeeIara---nP~l~~~v~rdi~smltsk---------d-~~Dkl~ 163 (253)
T 2db0_A 103 -----ELVKSMIPVLFANYRIG-DEKTKINVSYALEEIAKA---NPMLMASIVRDFMSMLSSK---------N-REDKLT 163 (253)
T ss_dssp -----HHHHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHTSCS---------S-HHHHHH
T ss_pred -----HHHHhhHHHHHHHHhcC-CccceecHHHHHHHHHHh---ChHHHHHHHHHHHHHhcCC---------C-hHHHHH
Confidence 77888999988777767 788888888888755544 3332222222233333332 2 111223
Q ss_pred HHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 193 AL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
| ..|+-..-... .+.....+|+|..||...|.-||..|-|++.=+-+..
T Consensus 164 a---LnFi~alGen~---~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n 212 (253)
T 2db0_A 164 A---LNFIEAMGENS---FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN 212 (253)
T ss_dssp H---HHHHHTCCTTT---HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC
T ss_pred H---HHHHHHHhccC---ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC
Confidence 3 34554443322 2445678999999999999999999999998777653
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=86.93 E-value=5.4 Score=43.73 Aligned_cols=160 Identities=8% Similarity=-0.015 Sum_probs=98.8
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhcCCCh--HHHHHHHHHHHHHHHH---
Q 014240 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDS--SKIASLLECLAVITFV--- 153 (428)
Q Consensus 80 L~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d~s~~--~~r~~~~~aLai~~fv--- 153 (428)
++..+...++.++..=+..|++++.-++..-. .-..+.+ ...|+|.+++..++.. ..|..|+.||+=++..
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~---~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKN---FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG---GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH---HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 45555566666776667788888888875422 2344444 5788898888877654 2677888888866632
Q ss_pred ----cCCChHHHHHHHHHHHHHhccCCCCc--c-ccCCCCHHH-HHHHHHHHHHhHhcCCC--CccchhhHH--hhHHHH
Q 014240 154 ----GGNDPEETERTMQIMWQIVHPKLGSN--V-VATRPSAPI-ITAMVSAWSFLLTTMDG--CSLDSKKWQ--QSISYF 221 (428)
Q Consensus 154 ----~~~d~~~~~~~m~~l~~i~~~~~g~~--~-~a~~~~~~l-~~AAL~aW~lLlT~~~~--~~~~~~~~~--~~l~~L 221 (428)
++... ......+..++.+..+.. + ....+-+.+ ...|+.|-+=|++.-++ ..+...++. .++|.|
T Consensus 535 ~~~f~~~~~---~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 535 GLIFKKYSA---LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp HHHSSSSCS---TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHcCCCcc---ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 12111 134445555554211110 0 000012223 66788888888876422 122234554 489999
Q ss_pred HhhhcCCChHHHHHHHHHHHHHHH
Q 014240 222 STLLDKDDRSIRIAAGEALALILE 245 (428)
Q Consensus 222 ~~lL~s~d~~VRiAAGEaiALl~E 245 (428)
.++|.+++..||.||-|+|+-|..
T Consensus 612 ~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 612 ENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999984
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.84 E-value=8.3 Score=43.23 Aligned_cols=52 Identities=23% Similarity=0.149 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 185 ~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
.++.+.-+|.-|.|++-.--+ + ...+..|..++...|..||.+|-.++++|-
T Consensus 624 ~d~~VR~gAalALGli~aGn~----~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 624 HNAHVRCGTAFALGIACAGKG----L----QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSC----C----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhccCCC----c----HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 567888888777776542211 1 255677888888889999999999999983
No 68
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=86.60 E-value=11 Score=35.05 Aligned_cols=143 Identities=12% Similarity=0.149 Sum_probs=83.9
Q ss_pred HHHHhhhcCCCH--HHHHHHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCh
Q 014240 82 HQCLSSIKRGSS--REIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDP 158 (428)
Q Consensus 82 ~~~~~sikkg~~--~E~~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~ 158 (428)
..+.+.++.++. .-+..|+..+..+|..-. +.-..|.+ ...|+|.+.+..+ +...+..++.||..+++ .++
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~--~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~---~~~ 84 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKS--EARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVF---EDN 84 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH--HHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT---TCH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc--HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHh---CCH
Confidence 345567777775 556677777777776433 22345654 4779999998764 45666677778876665 233
Q ss_pred HHHHHHHH-----HHHHHhccCCCCccccCCCCHHHHHHHH-HHHHHhHhcCCCCccchhhHHhhHHHHHhhhc------
Q 014240 159 EETERTMQ-----IMWQIVHPKLGSNVVATRPSAPIITAMV-SAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD------ 226 (428)
Q Consensus 159 ~~~~~~m~-----~l~~i~~~~~g~~~~a~~~~~~l~~AAL-~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~------ 226 (428)
+......+ .|..++.+ .+++.+.-.|. -=|.| +..+.. ...+.+..+|.|+.+|-
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~---------~~~~~~~e~a~~aL~nL--S~~~~~--k~~i~~~~i~~Lv~ll~~p~sG~ 151 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQ---------TRDLETKKQITGLLWNL--SSNDKL--KNLMITEALLTLTENIIIPFSGW 151 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH---------CCCHHHHHHHHHHHHHH--HTSGGG--HHHHHHHHHHHHCCCCCHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHcc---------CCCHHHHHHHHHHHHHH--HcChhh--HHHHHhccHHHHHHHHhccccCC
Confidence 33222222 34444432 13344444333 23444 233332 23456778999998762
Q ss_pred ----------CCChHHHHHHHHHHHHH
Q 014240 227 ----------KDDRSIRIAAGEALALI 243 (428)
Q Consensus 227 ----------s~d~~VRiAAGEaiALl 243 (428)
+.+.+|+..|.-+|.-+
T Consensus 152 ~~~~~~~~~~~~~~~v~~na~~~L~nL 178 (233)
T 3tt9_A 152 PEGDYPKANGLLDFDIFYNVTGCLRNM 178 (233)
T ss_dssp CGGGCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHH
Confidence 24678998888887765
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=85.85 E-value=31 Score=34.60 Aligned_cols=126 Identities=10% Similarity=0.119 Sum_probs=74.6
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHH
Q 014240 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEE 160 (428)
Q Consensus 82 ~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~ 160 (428)
..+.+.++.+..+.+..|+.++.-+|. +.......|.+ ...|+|.+.+.+ .++..+..++.||.-+++ .+++.
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~---~~~~~ 78 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVF---RSTTN 78 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHS---SCHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhc---CCHHH
Confidence 345566777877788899999998874 32222235554 478999998885 345556677777776665 22333
Q ss_pred HHHHH-----HHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhh
Q 014240 161 TERTM-----QIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLL 225 (428)
Q Consensus 161 ~~~~m-----~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL 225 (428)
..... ..|..++.. .+++.+.-.|..+-+-|... +. ....+.+..+|.|..+|
T Consensus 79 k~~i~~~G~i~~Lv~lL~~---------~~~~~~~~~a~~aL~nLa~~-~~--~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRR---------TGNAEIQKQLTGLLWNLSST-DE--LKEELIADALPVLADRV 136 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTT---------CCCHHHHHHHHHHHHHHHTS-SS--THHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhh---------CCCHHHHHHHHHHHHHHhcC-HH--hHHHHHhccHHHHHHHH
Confidence 22222 234555542 14456665554333334433 33 22235568899999999
No 70
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=85.66 E-value=9.9 Score=40.24 Aligned_cols=145 Identities=8% Similarity=0.124 Sum_probs=80.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChH
Q 014240 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE 159 (428)
Q Consensus 81 ~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~ 159 (428)
+..+.+.++.+..+-+..|+.++..+|..-. +.-..|.+ ...|+|.+++.++ +...+..++.||..+++-. +.+
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~--~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~--~~~ 124 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRND--KVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGR--DQD 124 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSS--CHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh--HHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccC--CHH
Confidence 3445566777777777888888877775322 22344554 4779999988764 4566666777776665421 233
Q ss_pred HHHHHH-----HHHHHHhccCCCCccccCCCCHHHHHHHH-HHHHHhHhcCCCCccchhhHHhhHHHHHhhh--------
Q 014240 160 ETERTM-----QIMWQIVHPKLGSNVVATRPSAPIITAMV-SAWSFLLTTMDGCSLDSKKWQQSISYFSTLL-------- 225 (428)
Q Consensus 160 ~~~~~m-----~~l~~i~~~~~g~~~~a~~~~~~l~~AAL-~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL-------- 225 (428)
.-..+. ..|..++.+ ..+..+...|. -=|.| +..+. ....+....+|.|+.+|
T Consensus 125 nk~~I~~~GaIp~LV~LL~s---------~~~~~~~e~aa~aL~nL--S~~~~--~k~~I~~~alp~Lv~LL~~p~sg~~ 191 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRK---------ARDMDLTEVITGTLWNL--SSHDS--IKMEIVDHALHALTDEVIIPHSGWE 191 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHH---------CCSHHHHHHHHHHHHHH--TTSGG--GHHHHHHHTHHHHHHHTHHHHHCCC
T ss_pred HHHHHHHcCCHHHHHHHHcC---------CCCHHHHHHHHHHHHHH--hCCch--hhHHHHhccHHHHHHHHhccccccc
Confidence 222222 234444433 12334333332 12222 22222 22245567889999877
Q ss_pred ----------cCCChHHHHHHHHHHHHH
Q 014240 226 ----------DKDDRSIRIAAGEALALI 243 (428)
Q Consensus 226 ----------~s~d~~VRiAAGEaiALl 243 (428)
++++.+|+.-|..+|.-|
T Consensus 192 ~~~~~~~k~~~~~d~~V~~nAa~~L~NL 219 (584)
T 3l6x_A 192 REPNEDCKPRHIEWESVLTNTAGCLRNV 219 (584)
T ss_dssp ----------CCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHH
Confidence 234678888776665544
No 71
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=84.16 E-value=26 Score=35.16 Aligned_cols=182 Identities=10% Similarity=0.002 Sum_probs=102.7
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhhhh-hhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQ-HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 38 l~~~id~l~eKr~stR~~aL~~l~~al~~~~~-~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
+...+..|.......+..|...|..+..+... ...+ ...-.+..+.+.++.++..-+..|+.++.-++.. ..+.-
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i--~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k 79 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQV--YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNK 79 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHH--HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHH--HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHH
Confidence 45566777666677788888888775432211 1112 1245567777888877776677888888877763 22223
Q ss_pred HHHHH-hhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHHhcc----C-CCCccccC-CCCHH
Q 014240 117 REILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE-RTMQIMWQIVHP----K-LGSNVVAT-RPSAP 188 (428)
Q Consensus 117 eei~~-~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~-~~m~~l~~i~~~----~-~g~~~~a~-~~~~~ 188 (428)
..|.+ ...|+|.+++....+...+..++.||+-++.- ...-..+. ..+..+..++.. . .+...... ..++.
T Consensus 80 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence 34433 57899999998555677777888888877753 22222222 334445555521 0 00111000 13456
Q ss_pred HHHHHHHHHHHhHhcCCCCccchhhHH--hhHHHHHhhhcC
Q 014240 189 IITAMVSAWSFLLTTMDGCSLDSKKWQ--QSISYFSTLLDK 227 (428)
Q Consensus 189 l~~AAL~aW~lLlT~~~~~~~~~~~~~--~~l~~L~~lL~s 227 (428)
+.-.|+.+-.-|... ......+.+ ..+|.|..+|.+
T Consensus 159 v~~~a~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHHHHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHh
Confidence 666665554444432 121112222 679999999975
No 72
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=81.83 E-value=3 Score=44.71 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=48.3
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHH-HHHHhhcCCChHHHHHHHHHHHHHHHHcCCC
Q 014240 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAP-ISQALKSGFDSSKIASLLECLAVITFVGGND 157 (428)
Q Consensus 79 TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~-L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d 157 (428)
.++..+ .-++.++.+++..|+.+++-+|- ++......+.+...++ |.+.+.| ++..+|.+++.||.-++.-+|.+
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCch
Confidence 334433 33777889999999999999983 2211122334445554 4555555 45678899999999888776643
No 73
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=81.33 E-value=12 Score=39.98 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=97.9
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheee-cCCCCc
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALT-VGYGEN 115 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~-lg~~~~ 115 (428)
..+..+..|..-+=.+|-.|--+|+++++.+-.. ..+. ....+ .+|+|++|++++. .|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G---AGR~--------~~~N~------DLAvRLLCVLALDRFGDY-- 235 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG---GDIQ--------IRVDS------KLFSKIYEILVTDKFNDF-- 235 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-------CC--------CCCCT------THHHHHHHHHHHBCCBBC--
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC---Ccee--------ccccH------HHHHHHHHHHHhcccccc--
Confidence 6777888888888899999999999988865321 0111 11111 8999999999984 3321
Q ss_pred hHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHH
Q 014240 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (428)
Q Consensus 116 ~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~ 195 (428)
+-|..-+.+|-.|+.+||.+ .-...+ .+++..++.. . ..+...+.-++|-
T Consensus 236 ---------------VSDqVVAPVRETaAQtLGaL-~hLp~e-------~~IL~qLV~~-l------~~~~WEVRHGGLL 285 (800)
T 3oc3_A 236 ---------------VDDRTVAPVRDAAAYLLSRI-YPLIGP-------NDIIEQLVGF-L------DSGDWQVQFSGLI 285 (800)
T ss_dssp ---------------SSSSCBCHHHHHHHHHHHHH-TTTSCS-------CCHHHHHTTG-G------GCSCHHHHHHHHH
T ss_pred ---------------ccCeeeeehHHHHHHHHHHH-HhCChh-------HHHHHHHHhh-c------CCCCeeehhhhHH
Confidence 23333346788999999998 333322 2223333311 0 1356788888888
Q ss_pred HHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHH
Q 014240 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (428)
Q Consensus 196 aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiA 241 (428)
+--.+--.+. . ++..++.+...|...|-|||.+|++++.
T Consensus 286 GLKYL~DLL~------~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLi 324 (800)
T 3oc3_A 286 ALGYLKEFVE------D-KDGLCRKLVSLLSSPDEDIKLLSAELLC 324 (800)
T ss_dssp HHHHTGGGCC------C-HHHHHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHH------H-HHHHHHHHHhhcCCcccHHHHHHHHHhh
Confidence 8777711111 1 5677888888899899999999999864
No 74
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=81.02 E-value=21 Score=39.78 Aligned_cols=161 Identities=9% Similarity=0.127 Sum_probs=87.9
Q ss_pred hhhhhHhHHHHHHHhhhcCCCH-------------------HH---HHHHHHHHhHheeecCCCCchHHHHHhhhHHHHH
Q 014240 72 FVEKKFATLLHQCLSSIKRGSS-------------------RE---IALASHAIGLLALTVGYGENSREILEESVAPISQ 129 (428)
Q Consensus 72 fi~~~~~TL~~~~~~sikkg~~-------------------~E---~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~ 129 (428)
........|+..++.-+++..+ ++ ...+..++-.++ .++ ...++.-+.+.|.+
T Consensus 384 ~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~-~~~----~~~~l~~v~~~l~~ 458 (1049)
T 3m1i_C 384 IYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLT-HLN----VIDTEEIMISKLAR 458 (1049)
T ss_dssp GGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHH-HHC----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHH-ccC----HHHHHHHHHHHHHH
Confidence 3344566777777776655321 11 112344444444 344 24667777777777
Q ss_pred HhhcC-CChHHHHHHHHHHHHHHHHcCCChH---H-HHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcC
Q 014240 130 ALKSG-FDSSKIASLLECLAVITFVGGNDPE---E-TERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTM 204 (428)
Q Consensus 130 ~l~d~-s~~~~r~~~~~aLai~~fv~~~d~~---~-~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~ 204 (428)
.+... .+-..+-+++.|+|.++ ++.... . +...+.++..+.....+ ++...++.+ --.|.+ +..
T Consensus 459 ~l~~~~~~W~~~eaal~algsia--~~~~~~~e~~~l~~v~~~l~~l~~~~~~------~~~~~~v~~-~~~~~l--gry 527 (1049)
T 3m1i_C 459 QIDGSEWSWHNINTLSWAIGSIS--GTMSEDTEKRFVVTVIKDLLDLTVKKRG------KDNKAVVAS-DIMYVV--GQY 527 (1049)
T ss_dssp HHTSSSCCHHHHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHTTSSCS------HHHHHHHHH-HHHHHH--HHC
T ss_pred HhCCCCCCHHHHHHHHHHHHHHh--cccCchhhHHHHHHHHHHHHHHHhhhcc------ccchHHHHH-HHHHHH--HHH
Confidence 76643 23366778888888443 332222 2 33445555543322111 011233332 133322 222
Q ss_pred CCC-ccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 205 DGC-SLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 205 ~~~-~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
+.+ .-..+.+...++.|...|.+++..||.+|+-++.-+.|-.+
T Consensus 528 ~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 528 PRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 01235677888998888988899999999999999888643
No 75
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=80.74 E-value=25 Score=38.63 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=95.9
Q ss_pred hhHHHHHHHhcccchHHH-HHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCC--CHHHHHHHHHHHhHheeecCC
Q 014240 36 TLLDEALDALYEKRGSTR-EKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG--SSREIALASHAIGLLALTVGY 112 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR-~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg--~~~E~~lA~~~l~Ll~l~lg~ 112 (428)
..+...+..|. ++-..+ -.||..|++.+... +......|+..+...+.++ +..++..+..+++.++..++
T Consensus 546 ~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~-----l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~- 618 (971)
T 2x1g_F 546 PAINLLVRGLN-SSMSAQATLGLKELCRDCQLQ-----LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR- 618 (971)
T ss_dssp HHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-
T ss_pred HHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-
Confidence 34455555553 433221 23555555444332 3345577888888888775 47888888899998887776
Q ss_pred CCchHHHHHhhhHHHHHHhh----cCC-ChHHHHHHHHHHHHHHH----HcCC-C--------hHH----HHHHHHHHHH
Q 014240 113 GENSREILEESVAPISQALK----SGF-DSSKIASLLECLAVITF----VGGN-D--------PEE----TERTMQIMWQ 170 (428)
Q Consensus 113 ~~~~eei~~~~~~~L~~~l~----d~s-~~~~r~~~~~aLai~~f----v~~~-d--------~~~----~~~~m~~l~~ 170 (428)
.++....++.+.+++...+. ... +...+...+.+|+.++- ++.. + .+. ...+|.++..
T Consensus 619 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 698 (971)
T 2x1g_F 619 PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKR 698 (971)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHH
Confidence 34455667776666555433 222 22234444555544332 2221 0 111 2345555555
Q ss_pred HhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCC
Q 014240 171 IVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKD 228 (428)
Q Consensus 171 i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~ 228 (428)
++... ..++.++-+|+.+|+-+++.+... +. ..+...++.|...+.+.
T Consensus 699 ~l~~~--------~~~~~v~e~~~~~~~~~~~~~~~~-~~-p~l~~~~~~l~~~~~~~ 746 (971)
T 2x1g_F 699 IAEMW--------VEEIDVLEAACSAMKHAITNLRSS-FQ-PMLQDLCLFIVASFQTR 746 (971)
T ss_dssp HHHHT--------TTCHHHHHHHHHHHHHHHHHHHC---C-THHHHHHHHHHHHCC--
T ss_pred HHHhc--------cccHHHHHHHHHHHHHHHHhhhhh-cc-ccHHHHHHHHHHHHhcC
Confidence 55331 245689999999999998876443 33 23455556665555543
No 76
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=77.91 E-value=56 Score=32.14 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=53.6
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHH--hhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheee
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFN--NTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALT 109 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~--~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~ 109 (428)
...++|+.|.......+-.+|-+|...|. ..+.++||...= +.++++.+..|+++-+..+++++.-+-..
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~G---L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~ 190 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEG---LSCLIRVGAAADHNYQSYILRALGQLMLF 190 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTH---HHHHHHHHTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhcc---HHHHHHHHHhcChHHHHHHHHHHHHHHhc
Confidence 57789999997777778889999998886 456778886433 45566677778889999999888776554
No 77
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=77.32 E-value=66 Score=35.33 Aligned_cols=197 Identities=12% Similarity=0.063 Sum_probs=113.8
Q ss_pred HHHHHhccc---chHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecC-----
Q 014240 40 EALDALYEK---RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVG----- 111 (428)
Q Consensus 40 ~~id~l~eK---r~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg----- 111 (428)
..+..|... ..-.|..|+..|-. |+..+ -.+....++..+++++......=+..|+.++.-++-...
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~-~~~~~----~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~ 533 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYT-FRNQL----TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP 533 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHH-TGGGS----CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHH-HHhhC----CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccc
Confidence 355666655 56668888865533 22222 234567888888888865444446777778777664322
Q ss_pred CC----CchHHHHHhhhHHHHHHhhcCC-Ch---HHHHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHhccCCCCcccc
Q 014240 112 YG----ENSREILEESVAPISQALKSGF-DS---SKIASLLECLAVITFVGGNDPEE-TERTMQIMWQIVHPKLGSNVVA 182 (428)
Q Consensus 112 ~~----~~~eei~~~~~~~L~~~l~d~s-~~---~~r~~~~~aLai~~fv~~~d~~~-~~~~m~~l~~i~~~~~g~~~~a 182 (428)
.. +.-...+..+.+.|..++.... .+ ...-.+..||+-++-..+.+... +..+|..+..++..... +
T Consensus 534 ~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~-~--- 609 (960)
T 1wa5_C 534 AFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK-N--- 609 (960)
T ss_dssp CBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT-S---
T ss_pred cccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-C---
Confidence 10 0011223344444444444431 11 12234567777665555544332 33455544433322100 1
Q ss_pred CCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 183 TRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 183 ~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
+.++.+...++.+-+.+++...+... ..+.+..+|.+...|+.+..++.-.+-+.++.+.+..
T Consensus 610 -~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 610 -PSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred -CCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 35567777789999999887444333 3567788999999999887777777888888887764
No 78
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=74.43 E-value=61 Score=35.26 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=87.1
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCC--CHHHHHHHHHHHhHheeecCCC
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG--SSREIALASHAIGLLALTVGYG 113 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg--~~~E~~lA~~~l~Ll~l~lg~~ 113 (428)
..+..++..|.++ ..|..|-..+...... . ...+.....+|+..+...+.++ +.+++..+..+++.++...+ .
T Consensus 529 ~vl~~l~~~l~~~--~V~~~A~~al~~l~~~-~-~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~ 603 (963)
T 2x19_B 529 SVLPLVLHALGNP--ELSVSSVSTLKKICRE-C-KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-V 603 (963)
T ss_dssp TTHHHHHHHTTCG--GGHHHHHHHHHHHHHH-T-GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-H
T ss_pred HHHHHHHHHhCCc--hHHHHHHHHHHHHHHH-H-HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-H
Confidence 3455566666553 3455544444433321 1 1223344567777777777664 36778888899999887665 2
Q ss_pred CchHHHHHhhhHHHHHHhh----cCCChH---HHHHHHHHHH-HHHHHcCCCh------------------HHHH----H
Q 014240 114 ENSREILEESVAPISQALK----SGFDSS---KIASLLECLA-VITFVGGNDP------------------EETE----R 163 (428)
Q Consensus 114 ~~~eei~~~~~~~L~~~l~----d~s~~~---~r~~~~~aLa-i~~fv~~~d~------------------~~~~----~ 163 (428)
++....++.+.+++...+. ...+.. .+..++.||+ +...++.... ..+. .
T Consensus 604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (963)
T 2x19_B 604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHH
Confidence 3445666777776655443 222332 3345667774 3334442111 1122 3
Q ss_pred HHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCC
Q 014240 164 TMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGC 207 (428)
Q Consensus 164 ~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~ 207 (428)
+|..+..++.. . ..++.++-.++.+|.-++..++..
T Consensus 684 ~~~~~~~~l~~-~-------~~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 684 VFQLIQKVLSK-W-------LNDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HHHHHHHHHHH-H-------TTCHHHHHHHHHHHHHHHHHSSST
T ss_pred HHHHHHHHHHh-c-------cCchHHHHHHHHHHHHHHHhhccc
Confidence 33333333332 1 244578888888998888766643
No 79
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=73.61 E-value=1.1e+02 Score=33.30 Aligned_cols=114 Identities=9% Similarity=0.091 Sum_probs=66.1
Q ss_pred HHHHhhhHHHHHHhh---cCCChHHHHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHhccCCCCccccCCCCHHHHHHH
Q 014240 118 EILEESVAPISQALK---SGFDSSKIASLLECLAVITFVGGNDPEE-TERTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (428)
Q Consensus 118 ei~~~~~~~L~~~l~---d~s~~~~r~~~~~aLai~~fv~~~d~~~-~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AA 193 (428)
.++..+.+.+.+.+. ++.+-..+-+++.|+|.++=.+..+... +...|. ++-. .. .+.+.|..++
T Consensus 441 ~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~----~l~~-l~------~~~~~vr~~~ 509 (963)
T 2x19_B 441 ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG----LIPR-IS------ISNVQLADTV 509 (963)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH----HGGG-SC------CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH----HHHh-CC------CCcHHHHHHH
Confidence 455566666666664 2334456677777777654332222211 223333 2211 11 1356677776
Q ss_pred HHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 194 VSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 194 L~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
+..-+=....+.. ..+.+...+++|...|.. ..||.+|+-++.-+.+-.
T Consensus 510 ~~~l~~~~~~l~~---~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 510 MFTIGALSEWLAD---HPVMINSVLPLVLHALGN--PELSVSSVSTLKKICREC 558 (963)
T ss_dssp HHHHHHTHHHHHH---CHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh---CHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH
Confidence 6655544443322 125677888998888854 889999999999887754
No 80
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=72.29 E-value=17 Score=41.00 Aligned_cols=182 Identities=10% Similarity=0.029 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheee--cCCCCchHHHHHhhhHHHH
Q 014240 51 STREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALT--VGYGENSREILEESVAPIS 128 (428)
Q Consensus 51 stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~--lg~~~~~eei~~~~~~~L~ 128 (428)
..+..-+.+|+.++.+.+-.. ....+...+++-+.+.....+.+|+-+++=+..- --+.+..+.+++-+.|.|.
T Consensus 484 ~~~v~l~k~lf~l~~rn~~~~----~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~ 559 (997)
T 1vsy_5 484 SGNVSFFSLVILLISSGFCEL----NMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLA 559 (997)
T ss_dssp HHHHHHHHHHHHHHTTTTCCC----CGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhcccchh----hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 347778888888775554432 3456666777755555566688888877765432 2234567889999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCc
Q 014240 129 QALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCS 208 (428)
Q Consensus 129 ~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~ 208 (428)
+++.++-.+... -.+..++-+.+.+.|+.-.-..++++..+-.+-+... +++-..+..|+-+.-++..+. |+
T Consensus 560 ~~l~~~lt~et~--~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~-----~ssf~~~~rl~ll~~~l~~~~-wr 631 (997)
T 1vsy_5 560 KCLDYELNHDAF--EIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRES-----DAATHQTSKIYMLRSILMSME-FR 631 (997)
T ss_dssp HHHSSCCCTTHH--HHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCS-----SCCCCCCSSHHHHHHHHHHHT-TS
T ss_pred HHHhccCCchhH--HHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCC-----CcHHHHHHHHHHHHHHHHHhc-cc
Confidence 999854333221 1355555556666788887777776632211101000 111111222333333333332 23
Q ss_pred cchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 209 LDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 209 ~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
.. . ++..+..+. |+++...||-+-|..++.++....
T Consensus 632 ~~-~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~ 667 (997)
T 1vsy_5 632 AP-D-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQS 667 (997)
T ss_dssp SC-C-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSC
T ss_pred cc-c-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhc
Confidence 22 1 223344433 888999999999999999999874
No 81
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=71.82 E-value=1.2e+02 Score=33.09 Aligned_cols=154 Identities=12% Similarity=0.073 Sum_probs=84.3
Q ss_pred hhhHhHHHHHHHhhhcCCCH--------HH-------HHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhc----C
Q 014240 74 EKKFATLLHQCLSSIKRGSS--------RE-------IALASHAIGLLALTVGYGENSREILEESVAPISQALKS----G 134 (428)
Q Consensus 74 ~~~~~TL~~~~~~sikkg~~--------~E-------~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d----~ 134 (428)
...+..|+..++.-+++... .| +.-+..++-.++-.+| ..++..+.+.+...+.. +
T Consensus 401 ~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-----~~~l~~~~~~l~~~l~~~~~~~ 475 (971)
T 2x1g_F 401 KPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-----DYILEILAAMLDEAIADLQRHP 475 (971)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-----THHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHhccCCC
Confidence 34556666766666654321 11 1223334433343333 36777777777777653 1
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhh
Q 014240 135 FDSSKIASLLECLAVITFVGGNDP-EETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKK 213 (428)
Q Consensus 135 s~~~~r~~~~~aLai~~fv~~~d~-~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~ 213 (428)
.+-..+-+++.||+.++=-+..+. ..+...|+.+-.+... .+.|.|..+|+..-+=+...+... .+.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~---------d~~~~vr~~a~~~l~~~~~~l~~~---~~~ 543 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYE---------KLNVKLLGTALETMGSYCNWLMEN---PAY 543 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTT---------TSCHHHHHHHHHHHHHTHHHHC-------C
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCcc---------ccCHHHHHHHHHHHHHHHHHHhcC---HHH
Confidence 233567777877776532111111 1223334422221110 135778888887666665554432 245
Q ss_pred HHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 214 WQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 214 ~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
+...++.|...|+ ..|+.+|+.++.-+.|-.
T Consensus 544 l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 544 IPPAINLLVRGLN---SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp HHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHH
Confidence 6788888888884 789999999999888754
No 82
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=71.34 E-value=42 Score=35.73 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=22.4
Q ss_pred HHHHhhhHHHHHHhhcC-CCh---HHHHHHHHHHHHHH
Q 014240 118 EILEESVAPISQALKSG-FDS---SKIASLLECLAVIT 151 (428)
Q Consensus 118 ei~~~~~~~L~~~l~d~-s~~---~~r~~~~~aLai~~ 151 (428)
.+.+.+.|.|.++..-. +++ ..+..++.||.-++
T Consensus 416 ~ll~~~~P~l~~~~~~~~~~~~~~~l~~rAl~aLnNl~ 453 (684)
T 4gmo_A 416 ELIQTAVPQLIRLSNLPIDSDESLTIQSHALSALNNIS 453 (684)
T ss_dssp HHHHTHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHhhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 46677788888765533 232 56778888887554
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=71.19 E-value=50 Score=31.16 Aligned_cols=146 Identities=11% Similarity=0.019 Sum_probs=90.9
Q ss_pred hhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC
Q 014240 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (428)
Q Consensus 35 ~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~ 114 (428)
+..|+.+|..+.+|.-++-..|++.|...+..-.++ ++.+.-+++.+..-+++|.+-=..-|+-.++-+-++..
T Consensus 74 e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~---~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~--- 147 (265)
T 3b2a_A 74 ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG---SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED--- 147 (265)
T ss_dssp HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC---
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc---
Confidence 557888888888888888888888887777765544 34677888888888888875556667788887744333
Q ss_pred chHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHH
Q 014240 115 NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMV 194 (428)
Q Consensus 115 ~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL 194 (428)
+..+...|.+++ .+.+...+++++.+|--+.-..+ |++-++....=+-+++.+ .+|.++-=||
T Consensus 148 -----~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~-D~~i~~~I~~eI~elL~~----------eD~~l~e~aL 210 (265)
T 3b2a_A 148 -----SKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSA-DSGHLTLILDEIPSLLQN----------DNEFIVELAL 210 (265)
T ss_dssp -----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCS-SCCCGGGTTTTHHHHHTC----------SCHHHHHHHH
T ss_pred -----hHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccC-CHHHHHHHHHHHHHHHcC----------CCHHHHHHHH
Confidence 344666777777 55566777665555533333322 222111111112222222 4667777777
Q ss_pred HHHHHhHhc
Q 014240 195 SAWSFLLTT 203 (428)
Q Consensus 195 ~aW~lLlT~ 203 (428)
.+---.+|.
T Consensus 211 d~Le~ils~ 219 (265)
T 3b2a_A 211 DVLEKALSF 219 (265)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHcC
Confidence 776666665
No 84
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=70.79 E-value=1.1e+02 Score=32.13 Aligned_cols=179 Identities=9% Similarity=0.052 Sum_probs=96.5
Q ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCC-------------CHHHHHHHHHH
Q 014240 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG-------------SSREIALASHA 102 (428)
Q Consensus 36 ~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg-------------~~~E~~lA~~~ 102 (428)
..++...+.|.++....+.+|+..+..+..+.... |. .-...++..+.+.+-.+ .+==|....++
T Consensus 187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-~~-~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~l 264 (621)
T 2vgl_A 187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE-FK-TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRL 264 (621)
T ss_dssp SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH-HT-THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH-HH-HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHH
Confidence 45667777888999999999999888876655321 11 11112222222222112 12225566666
Q ss_pred HhHheeecCCCCchHHHHHhhhHHHHHHhhc---CC--------Ch--HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014240 103 IGLLALTVGYGENSREILEESVAPISQALKS---GF--------DS--SKIASLLECLAVITFVGGNDPEETERTMQIMW 169 (428)
Q Consensus 103 l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d---~s--------~~--~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~ 169 (428)
++.++-+ ++ .+..+.+.++|.++++. .. ++ ++.-.|+.++ ..+. .+++-...+...+-
T Consensus 265 l~~~~~~----~d-~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i---~~l~-~~~~~~~~~~~~L~ 335 (621)
T 2vgl_A 265 LQCYPPP----ED-PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI---IHHD-SEPNLLVRACNQLG 335 (621)
T ss_dssp GGGSSSC----SS-HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHH---HHHC-CCHHHHHHHHHHHH
T ss_pred HHHhCCC----CC-HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHH---HhcC-CcHHHHHHHHHHHH
Confidence 6665432 11 24444455555555532 22 11 3333333332 2233 34444455555555
Q ss_pred HHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhc-CCChHHHHHHHHH
Q 014240 170 QIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD-KDDRSIRIAAGEA 239 (428)
Q Consensus 170 ~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~-s~d~~VRiAAGEa 239 (428)
.++.+ .++.+.-.||.+...++..-|. ...++.+.+.+..+|. ++|..||.-|=+.
T Consensus 336 ~~L~~----------~~~niry~aL~~l~~l~~~~~~----~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~l 392 (621)
T 2vgl_A 336 QFLQH----------RETNLRYLALESMCTLASSEFS----HEAVKTHIETVINALKTERDVSVRQRAVDL 392 (621)
T ss_dssp HHSSC----------SCHHHHHHHHHHHHHHTTCTTT----HHHHHTTHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHhcC----------CCcchHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHhccCCCHhHHHHHHHH
Confidence 55532 4567888888888888765432 1345667777777777 7778887765554
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=69.53 E-value=77 Score=29.94 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=100.7
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHh--hhc--CCCHHHHHHHHHHHhHheeecCCC--
Q 014240 40 EALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLS--SIK--RGSSREIALASHAIGLLALTVGYG-- 113 (428)
Q Consensus 40 ~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~--sik--kg~~~E~~lA~~~l~Ll~l~lg~~-- 113 (428)
++...|..|.-+-|.+|++.|.+++.+.. +.....+|.+++ ++| .....=...++.++..+.-.++..
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~------~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP------RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH------HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 46677788888889999999999876532 122233333444 111 112222233334443333222211
Q ss_pred CchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHH
Q 014240 114 ENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (428)
Q Consensus 114 ~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AA 193 (428)
.-++.-...+.|.|..-+-|+- ...|.++-..|-.++.++. ....+.++...+.+ .++-.....
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k-~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ks----------KN~R~R~e~ 187 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAK-DNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDALKS----------KNARQRSEC 187 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGGGC----------SCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHcc----------CCHHHHHHH
Confidence 1122223356777744443322 3456666666665555532 22334444444433 345666677
Q ss_pred HHHHHHhHhcCCCCccchhhHHhhH---HHHHhhhcCCChHHHHHHHHHHHHHHHh
Q 014240 194 VSAWSFLLTTMDGCSLDSKKWQQSI---SYFSTLLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 194 L~aW~lLlT~~~~~~~~~~~~~~~l---~~L~~lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
|..-+-++...... . ..++ |.+..+|+..|.+||-||=-++.-+|=.
T Consensus 188 l~~l~~li~~~G~~---~---~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 188 LLVIEYYITNAGIS---P---LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHHCSG---G---GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---c---cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 77666666554333 1 2467 9999999999999999999988877744
No 86
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=69.19 E-value=1.2e+02 Score=31.88 Aligned_cols=128 Identities=9% Similarity=0.018 Sum_probs=79.1
Q ss_pred CCHHHHH-HHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014240 91 GSSREIA-LASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMW 169 (428)
Q Consensus 91 g~~~E~~-lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~ 169 (428)
.+..+.. .-.+++.+ ..+|.. .. ...+...+.+.+..-..+|.. -|++..+. ..+++.+..+...|.
T Consensus 50 ~~~~~k~~~l~Kli~l--~~~G~d--~s----~~~~~vvkl~~s~~~~~Krl~---YL~l~~~~-~~~~e~~~L~iN~l~ 117 (621)
T 2vgl_A 50 LDGYSKKKYVCKLLFI--FLLGHD--ID----FGHMEAVNLLSSNRYTEKQIG---YLFISVLV-NSNSELIRLINNAIK 117 (621)
T ss_dssp CCHHHHHHHHHHHHHH--HHHSCC--CC----SCHHHHHHGGGCSCHHHHHHH---HHHHHHSC-CCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--HHcCCC--Cc----hhHHHHHHHhcCCCHHHHHHH---HHHHHHHc-cCCcHHHHHHHHHHH
Confidence 3555543 33355544 335642 11 233444445555444456633 34444444 335555544444443
Q ss_pred HHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhh--cCCChHHHHHHHHHHHHHHHhc
Q 014240 170 QIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLL--DKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 170 ~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL--~s~d~~VRiAAGEaiALl~E~~ 247 (428)
.=+. .+++-+.+.||.+-+-+-+ +++++..+|.+..+| .+.+.-||..|.-++.=+|...
T Consensus 118 kDl~----------~~n~~ir~lALr~L~~i~~--------~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 118 NDLA----------SRNPTFMGLALHCIANVGS--------REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS 179 (621)
T ss_dssp HHHH----------SCCHHHHHHHHHHHHHHCC--------HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred HhcC----------CCCHHHHHHHHHHhhccCC--------HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3222 2678899999999988743 356678889999999 8889999999999999999975
Q ss_pred c
Q 014240 248 S 248 (428)
Q Consensus 248 ~ 248 (428)
.
T Consensus 180 p 180 (621)
T 2vgl_A 180 P 180 (621)
T ss_dssp G
T ss_pred h
Confidence 3
No 87
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=68.48 E-value=1.2e+02 Score=31.84 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=60.7
Q ss_pred hHHHHHHHhcc-cchHHHHHHHHHHHHHHHhh-hhhhhhhh--hHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCC
Q 014240 37 LLDEALDALYE-KRGSTREKALSSIIEAFNNT-LQHQFVEK--KFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGY 112 (428)
Q Consensus 37 ~l~~~id~l~e-Kr~stR~~aL~~l~~al~~~-~~~~fi~~--~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~ 112 (428)
.+.-++..|.. .+..++++|...|....... .....+.. +....+..+.+-+..++..-+.-|+.++.-|+....
T Consensus 309 ~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~- 387 (584)
T 3l6x_A 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR- 387 (584)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh-
Confidence 35556666643 46777899888777665432 22222221 124557777788877877777788888888876332
Q ss_pred CCchHHHHHhhhHHHHHHhhcCC
Q 014240 113 GENSREILEESVAPISQALKSGF 135 (428)
Q Consensus 113 ~~~~eei~~~~~~~L~~~l~d~s 135 (428)
.-+.|-....|.|.+++..+.
T Consensus 388 --~~~~I~~g~ip~LV~LL~~~~ 408 (584)
T 3l6x_A 388 --NKELIGKHAIPNLVKNLPGGQ 408 (584)
T ss_dssp --CHHHHHHHHHHHHHHTSSSSS
T ss_pred --HHHHHHhCCHHHHHHHhcCCc
Confidence 234555567888888777653
No 88
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=62.07 E-value=32 Score=39.00 Aligned_cols=120 Identities=10% Similarity=0.096 Sum_probs=73.0
Q ss_pred HHHHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHcCCChH-H---HHHHHHHHHHHhccCCCCccccCCCCHHHHHH
Q 014240 118 EILEESVAPISQALKSGF-DSSKIASLLECLAVITFVGGNDPE-E---TERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (428)
Q Consensus 118 ei~~~~~~~L~~~l~d~s-~~~~r~~~~~aLai~~fv~~~d~~-~---~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~A 192 (428)
+.+.-+.+.|.+-+.... +-..+-+++.|+|.++ |+-.++ + +-..|+++..+.+.+-| ++. ..+.|
T Consensus 473 ~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa--g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~------kd~-k~~va 543 (1073)
T 3gjx_A 473 DTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS--GAMHEEDEKRFLVTVIKDLLGLCEQKRG------KDN-KAIIA 543 (1073)
T ss_dssp HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHHHHSCS------HHH-HHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH--CcCCcccccchHHHHHHHHhcccccccc------cch-hHHHH
Confidence 344444455544433222 2366677777777665 666542 2 44677777776655322 122 33334
Q ss_pred HHHHHHHhHhcCCCCcc-chhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 193 MVSAWSFLLTTMDGCSL-DSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 193 AL~aW~lLlT~~~~~~~-~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
+.-.| ++...+.|-. ..+.++..+.+|.+.+..++..|+-||..|++-|.+-.+
T Consensus 544 s~i~~--vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 544 SNIMY--IVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHH--HHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred HHHHH--HHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 43344 4444444422 245677888888888888899999999999999988654
No 89
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=61.36 E-value=1.1e+02 Score=28.72 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=65.5
Q ss_pred HHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHH--
Q 014240 118 EILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS-- 195 (428)
Q Consensus 118 ei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~-- 195 (428)
.+|.+++|.+.....+ .+...|..++.=++=+ |..+++-+..+++.++.++.. .++.|+=.|+.
T Consensus 49 ~ll~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~---~~~k~~l~~~~l~~L~~Ll~d----------~d~~V~K~~I~~~ 114 (257)
T 3gs3_A 49 ELAEEFLESVLSLAHD-SNMEVRKQVVAFVEQV---CKVKVELLPHVINVVSMLLRD----------NSAQVIKRVIQAC 114 (257)
T ss_dssp GGHHHHHHHHHGGGGC-SCHHHHHHHHHHHHHH---HHHCGGGHHHHHHHHHHHTTC----------SCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence 3677777777666555 4556666655433332 344666677888888877742 33444444444
Q ss_pred --HHHHhHhcCCCCc-c---chhhHHhh---HHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 196 --AWSFLLTTMDGCS-L---DSKKWQQS---ISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 196 --aW~lLlT~~~~~~-~---~~~~~~~~---l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
.|-+++-.+-... . ....|+.. -..+..++++.+..||+.|=-.+--+.
T Consensus 115 ~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 115 GSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 3434333322221 1 13566543 345667789999999999876655444
No 90
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=60.00 E-value=10 Score=30.83 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=51.3
Q ss_pred HHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHH
Q 014240 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (428)
Q Consensus 117 eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~a 196 (428)
...+....|.|...+.+. +...|..++.+|+- ++.. .+ ..+...+. .+++.|..+|+.+
T Consensus 7 ~~~~~~~~~~l~~~L~~~-~~~vR~~A~~~L~~---~~~~---~~----~~L~~~L~----------d~~~~vR~~A~~a 65 (131)
T 1te4_A 7 HHHHSSGLVPRGSHMADE-NKWVRRDVSTALSR---MGDE---AF----EPLLESLS----------NEDWRIRGAAAWI 65 (131)
T ss_dssp --------------CCSS-CCCSSSSCCSSTTS---CSST---TH----HHHHHGGG----------CSCHHHHHHHHHH
T ss_pred cccccccHHHHHHHhcCC-CHHHHHHHHHHHHH---hCch---HH----HHHHHHHc----------CCCHHHHHHHHHH
Confidence 345556667777777654 44566666666652 2221 12 33334332 2567888888766
Q ss_pred HHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240 197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (428)
Q Consensus 197 W~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl 243 (428)
.+-+- . ...++.|..+|++++..||.+|.++|+-+
T Consensus 66 L~~~~----~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 66 IGNFQ----D--------ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HGGGC----S--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHhcC----C--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 54331 1 25689999999999999999999999865
No 91
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=56.18 E-value=76 Score=30.44 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHH
Q 014240 51 STREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQA 130 (428)
Q Consensus 51 stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~ 130 (428)
..+.-+|+-++++|.+..-..++...+.++++.+..+.-.....=+..++.++-=+++..-...+.++ -..+...+.++
T Consensus 163 ~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~-~~~ll~~l~~i 241 (304)
T 3ebb_A 163 ANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG-KAQCLSLISTI 241 (304)
T ss_dssp HHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH-HHHHHHHHHHH
Confidence 45889999999999988766777778899999888775333333344444444444443221111222 33356667777
Q ss_pred hhcCCChHHHHHHHHHHHHHHHH
Q 014240 131 LKSGFDSSKIASLLECLAVITFV 153 (428)
Q Consensus 131 l~d~s~~~~r~~~~~aLai~~fv 153 (428)
+....++.+.-.++.|||-+.+.
T Consensus 242 l~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 242 LEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHHHHHHHHHHHHHhC
Confidence 77666777767788888876653
No 92
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=55.40 E-value=34 Score=36.56 Aligned_cols=157 Identities=12% Similarity=0.070 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHH
Q 014240 51 STREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQA 130 (428)
Q Consensus 51 stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~ 130 (428)
-.||.|=+.|-.+ .++..+ ..++.++.+.+.+. .|-++=-|||.+..- .+--.. ++.+.|.+..-
T Consensus 243 PVRETaAQtLGaL--~hLp~e------~~IL~qLV~~l~~~-----~WEVRHGGLLGLKYL-~DLL~~-Ld~Vv~aVL~G 307 (800)
T 3oc3_A 243 PVRDAAAYLLSRI--YPLIGP------NDIIEQLVGFLDSG-----DWQVQFSGLIALGYL-KEFVED-KDGLCRKLVSL 307 (800)
T ss_dssp HHHHHHHHHHHHH--TTTSCS------CCHHHHHTTGGGCS-----CHHHHHHHHHHHHHT-GGGCCC-HHHHHHHHHHH
T ss_pred ehHHHHHHHHHHH--HhCChh------HHHHHHHHhhcCCC-----CeeehhhhHHHHHHH-HHHHHH-HHHHHHHHHhh
Confidence 3477776665443 222222 23344444444222 244455555555433 110011 55666666666
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccc
Q 014240 131 LKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLD 210 (428)
Q Consensus 131 l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~ 210 (428)
+.|. +..+|+.++.+|-=++ .++.+...+..+|+.+..-+.- ..+.+-+---|.+|.-.= ......
T Consensus 308 L~D~-DDDVRAVAAetLiPIA-----~p~~l~~LL~iLWd~L~~LDDL-----SASTgSVMdLLAkL~s~p---~~a~~d 373 (800)
T 3oc3_A 308 LSSP-DEDIKLLSAELLCHFP-----ITDSLDLVLEKCWKNIESEELI-----SVSKTSNLSLLTKIYREN---PELSIP 373 (800)
T ss_dssp TTCS-SHHHHHHHHHHHTTSC-----CSSTHHHHHHHHHHHHHTCCSC-----CTTHHHHHHHHHHHHHHC---TTCCCC
T ss_pred cCCc-ccHHHHHHHHHhhhhc-----chhhHHHHHHHHHHHhhhhccc-----chhhHHHHHHHHHHHcCC---cccccC
Confidence 6665 4466666655554322 6677889999999988763322 133333333333333222 111111
Q ss_pred hhhHHhhHHHHHhhhcCCChHHHHHHHHHH
Q 014240 211 SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240 (428)
Q Consensus 211 ~~~~~~~l~~L~~lL~s~d~~VRiAAGEai 240 (428)
...+|+|-.+|.++-.+||.|+-+++
T Consensus 374 ----p~LVPRL~PFLRHtITSVR~AVL~TL 399 (800)
T 3oc3_A 374 ----PERLKDIFPCFTSPVPEVRTSILNMV 399 (800)
T ss_dssp ----SGGGGGTGGGGTCSSHHHHHHHHHHT
T ss_pred ----hHHHHHHHhhhcCCcHHHHHHHHHHH
Confidence 26789999999999999999965543
No 93
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=55.01 E-value=55 Score=30.13 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=59.5
Q ss_pred hhHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHhccCCCCccccCCCCHHHHHHHHHH
Q 014240 123 SVAPISQALKSGFD-SSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (428)
Q Consensus 123 ~~~~L~~~l~d~s~-~~~r~~~~~aLai~~fv~~~d~~~~~~~-----m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~a 196 (428)
..|+|.+.+..+.. ...+..++.+|..+++= +++..... +..|..++.+ +++.+...|..+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~---~~~~r~~I~~~G~Ip~LV~lL~s----------~~~~vq~~Aa~a 75 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQ---KSEARKRVNQLRGILKLLQLLKV----------QNEDVQRAVCGA 75 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH---CHHHHHHHHHTTHHHHHHHGGGC----------CCHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC---CcHHHHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 56788888877654 25555566677666653 33222222 2234444433 556777777555
Q ss_pred HHHhHhcCCCCccchhhH-HhhHHHHHhhhc-CCChHHHHHHHHHHHHHHHhc
Q 014240 197 WSFLLTTMDGCSLDSKKW-QQSISYFSTLLD-KDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 197 W~lLlT~~~~~~~~~~~~-~~~l~~L~~lL~-s~d~~VRiAAGEaiALl~E~~ 247 (428)
-.-|... .......+. ...+|.|+.+|. +.+.++|-.|. +.|+.+.
T Consensus 76 L~nLa~~--~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~---~aL~nLS 123 (233)
T 3tt9_A 76 LRNLVFE--DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT---GLLWNLS 123 (233)
T ss_dssp HHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH---HHHHHHH
T ss_pred HHHHHhC--CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHH---HHHHHHH
Confidence 4444432 111111122 356999999997 57888887653 3444444
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=54.52 E-value=92 Score=28.53 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=56.0
Q ss_pred hcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCC-chHHHHHhh
Q 014240 45 LYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE-NSREILEES 123 (428)
Q Consensus 45 l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~-~~eei~~~~ 123 (428)
|.+.|..+|..|+..+..+...... ...+++.+...++...++=+.-++..+.-+.-..|... ........+
T Consensus 112 l~~~k~~~~~~a~~~l~~~~~~~~~-------~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i 184 (278)
T 4ffb_C 112 LTSSRATTKTQSMSCILSLCGLDTS-------ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPEL 184 (278)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTSSS-------SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHH
Confidence 3455778899999877665543221 12344556667765555444444444444444445321 122333344
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC
Q 014240 124 VAPISQALKSGFDSSKIASLLECLAVITFVGG 155 (428)
Q Consensus 124 ~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~ 155 (428)
.+.+...+ +.+++.+|.+++.+++-+.-+.|
T Consensus 185 ~~~l~k~l-~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 185 LKHVPQLA-GHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp GGGHHHHH-TCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHH-hCCcHHHHHHHHHHHHHHHHHhC
Confidence 44444443 45668889999888876654444
No 95
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=52.91 E-value=1.1e+02 Score=28.76 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=64.7
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
.+-..|+.+.+-+.+.|+.+-.-+ ..+..-+.+ ..+.+.+..++|.-+.+-+.-.+..++-+.=+.|..
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il-~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--- 201 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIV-NVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--- 201 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHH-HHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---
T ss_pred HHHHHHHHhCCChHHHHHHHHHHH-HHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---
Confidence 455567777777778888877644 333332322 334455566775444555555555555555555542
Q ss_pred HHHHHhhh---HHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCC
Q 014240 117 REILEESV---APISQALKSGFDSSKIASLLECLAVITFVGGND 157 (428)
Q Consensus 117 eei~~~~~---~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d 157 (428)
..... |.+.+.+.| +++.+|-+|+.|+.-+-...|+.
T Consensus 202 ---~~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGD-KDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ---ccccccchHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHH
Confidence 12345 666666655 77899999999998777776643
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=46.80 E-value=3.3e+02 Score=30.02 Aligned_cols=177 Identities=10% Similarity=0.043 Sum_probs=90.3
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCC--HH----H---HHHHHHHHhHheeecCCCCchHH
Q 014240 48 KRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS--SR----E---IALASHAIGLLALTVGYGENSRE 118 (428)
Q Consensus 48 Kr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~--~~----E---~~lA~~~l~Ll~l~lg~~~~~ee 118 (428)
....+|..|+..|.+.+.+++. ..-.+.+..|-..++..+.... +. + +.-.+.+++.++.+..++
T Consensus 61 ~~~~vr~~aa~~Lk~~i~~~W~-~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~----- 134 (1049)
T 3m1i_C 61 TNPQSKFIALSILDKLITRKWK-LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----- 134 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHTGG-GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred CCHHHHHHHHHHHHHHHHhhCc-cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc-----
Confidence 3556688888777766665432 1112344444444444443221 10 1 223445666666665432
Q ss_pred HHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHH-HHcCC---Ch---------HH----HHHHHHHHHHHhccCCCCccc
Q 014240 119 ILEESVAPISQALKSGFDSSKIASLLECLAVIT-FVGGN---DP---------EE----TERTMQIMWQIVHPKLGSNVV 181 (428)
Q Consensus 119 i~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~-fv~~~---d~---------~~----~~~~m~~l~~i~~~~~g~~~~ 181 (428)
-+.++.|.|.+.+. ++...+..++..|..++ -+... +. +. +...+.++..++..
T Consensus 135 ~Wp~ll~~L~~~~~--~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~------- 205 (1049)
T 3m1i_C 135 NWPEFIPELIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ------- 205 (1049)
T ss_dssp TCTTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred cchHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 14456666666654 33333444555555554 22211 10 11 11223333444432
Q ss_pred cCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHh-hhcCCChHHHHHHHHHHHHHHHh
Q 014240 182 ATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFST-LLDKDDRSIRIAAGEALALILET 246 (428)
Q Consensus 182 a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~-lL~s~d~~VRiAAGEaiALl~E~ 246 (428)
..++.+..+||.+..-.+.-++...+.. ...++.+.+ ++ .+.++|.+|-+++.-++..
T Consensus 206 --~~~~~~~~~aL~~l~~~l~wi~~~~~~~---~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 206 --GSSSSLIVATLESLLRYLHWIPYRYIYE---TNILELLSTKFM--TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCTHHHHS---SSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHC
T ss_pred --cCCHHHHHHHHHHHHHHHhhCCHHHHhh---hhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhC
Confidence 1356788899998877776665432211 233444442 33 2788999998888777765
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=44.04 E-value=1.8e+02 Score=32.61 Aligned_cols=120 Identities=10% Similarity=0.113 Sum_probs=71.6
Q ss_pred HHHHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHcCCChH-H---HHHHHHHHHHHhccCCCCccccCCCCHHHHHH
Q 014240 118 EILEESVAPISQALKSGF-DSSKIASLLECLAVITFVGGNDPE-E---TERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (428)
Q Consensus 118 ei~~~~~~~L~~~l~d~s-~~~~r~~~~~aLai~~fv~~~d~~-~---~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~A 192 (428)
++.+.+.+.|.+.+.... +=..+-+++.|+|.+. +|-+++ + +...|..+..+...+.| .++.++.+
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa--~~~~~~~e~~~l~~vi~~Ll~l~~~~~~-------~d~k~~v~ 517 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSIS--GTMSEDTEKRFVVTVIKDLLDLCVKKRG-------KDNKAVVA 517 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHHHHCCS-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHHHHhhhcccc-------CcchHHHH
Confidence 555556666666555433 2366777777776544 555543 2 33566666666554322 12344444
Q ss_pred HHHHHHHhHhcCCCC-ccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 193 MVSAWSFLLTTMDGC-SLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 193 AL~aW~lLlT~~~~~-~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
..-+|.+ ...+.| ...++.++..+.+|.+.|..++..|+-+|..++.-|.|-.+
T Consensus 518 ~t~~~~l--Gry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 518 SDIMYVV--GQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HHHHHHH--HTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4444443 222222 11345667778888888877789999999999999998654
No 98
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=41.17 E-value=1.4e+02 Score=33.52 Aligned_cols=120 Identities=4% Similarity=-0.056 Sum_probs=73.2
Q ss_pred HHHHhhhHHHHHHhhcCCC--hH--HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHH
Q 014240 118 EILEESVAPISQALKSGFD--SS--KIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (428)
Q Consensus 118 ei~~~~~~~L~~~l~d~s~--~~--~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AA 193 (428)
.+...+.|.|..++..... .. .|..+++++|=.+=+....++-+...|..++..+.. +.|.|..+|
T Consensus 491 ~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~----------~~~~v~~~A 560 (1023)
T 4hat_C 491 RFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE----------THEGVQDMA 560 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTC----------SCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc----------CCHHHHHHH
Confidence 4556677777777664332 32 334556788744433334666677788877765532 456788888
Q ss_pred HHHHHHhHhcCCCCccc------hhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhc
Q 014240 194 VSAWSFLLTTMDGCSLD------SKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (428)
Q Consensus 194 L~aW~lLlT~~~~~~~~------~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (428)
..|..-|...|...-.. +..+...+..+...++.-+..-+..+-|+|+.+....
T Consensus 561 ~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 561 CDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 88888777765532110 1133444445555555556777788889998887654
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=40.85 E-value=2.5e+02 Score=27.39 Aligned_cols=94 Identities=10% Similarity=-0.013 Sum_probs=54.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHH
Q 014240 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEE 160 (428)
Q Consensus 81 ~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~ 160 (428)
+.++.+-+..+.+--+.+|.|.++-+.. + ++.+.+.+++++.+.|....-. .+|+.|. . -+.-..++-
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~------~m~~~l~~~lk~~L~d~~pyVR-k~A~l~~--~-kL~~~~pe~ 173 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITD--S------TMLQAIERYMKQAIVDKVPSVS-SSALVSS--L-HLLKCSFDV 173 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC--T------TTHHHHHHHHHHHHTCSSHHHH-HHHHHHH--H-HHTTTCHHH
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCC--H------HHHHHHHHHHHHHcCCCCHHHH-HHHHHHH--H-HHhccCHHH
Confidence 4444455544555557788888876532 2 5788899999999888765444 3333332 2 233445665
Q ss_pred HHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHH
Q 014240 161 TERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (428)
Q Consensus 161 ~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~a 196 (428)
+...++-+.+.+. ..+|.|+..|+.+
T Consensus 174 v~~~~~~l~~ll~----------d~n~~V~~~Al~l 199 (355)
T 3tjz_B 174 VKRWVNEAQEAAS----------SDNIMVQYHALGL 199 (355)
T ss_dssp HHTTHHHHHHHTT----------CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----------CCCccHHHHHHHH
Confidence 5554444444442 2456777655543
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=37.32 E-value=2.6e+02 Score=26.01 Aligned_cols=167 Identities=9% Similarity=0.037 Sum_probs=91.1
Q ss_pred hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (428)
Q Consensus 37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~ 116 (428)
-++++|.+|..+=+. =+.+++-|..+-..-+. ......++..+.....-...+.+.+|+.+++-+ . .
T Consensus 34 ~~~~~~~~~~~~~~~-~~~gf~~~~~~a~~~~~----~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~--~--~---- 100 (240)
T 3l9t_A 34 SMKQYVARLEKDFSL-IEHGFKEEEQRALTDYK----SNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL--S--K---- 100 (240)
T ss_dssp CHHHHHHHHHHHHTC------CHHHHHHHHHHH----HSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT--T--T----
T ss_pred HHHHHHHHHHHHHHH-hhcccHHHHHHHHHHHH----hCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc--c--C----
Confidence 367777777544332 25566555444332211 112344455555555455677788999987765 2 1
Q ss_pred HHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHH
Q 014240 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (428)
Q Consensus 117 eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~a 196 (428)
..+.+|.|+..+.+...=.+|--++.+++=.|. ..+++.+... +..-+. .+++-|--+|+.+
T Consensus 101 ---~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~--~~~pe~~l~~---~~~W~~----------d~n~~VRR~Ase~ 162 (240)
T 3l9t_A 101 ---DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCK--KIEYKKALPI---IDEWLK----------SSNLHTRRAATEG 162 (240)
T ss_dssp ---SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH--HHCTTTTHHH---HHHHHH----------CSSHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH--hcCHHHHHHH---HHHHhc----------CCCHHHHHHHHHh
Confidence 134667777634433333454444555553332 1244433333 333222 2566777777776
Q ss_pred ---HHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHH
Q 014240 197 ---WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (428)
Q Consensus 197 ---W~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiA 241 (428)
|+.+ +....+. +..+|.|..+.+.++.=||.|-|=+|-
T Consensus 163 ~rpW~~~----~~~k~dp---~~ll~iL~~L~~D~s~yVrKSVan~Lr 203 (240)
T 3l9t_A 163 LRIWTNR----PYFKENP---NEAIRRIADLKEDVSEYVRKSVGNALR 203 (240)
T ss_dssp TCSGGGS----TTTTTCH---HHHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred hHHHhcc----chhhcCH---HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 7753 3333333 467888889999999999999998763
No 101
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.09 E-value=1.8e+02 Score=26.48 Aligned_cols=66 Identities=8% Similarity=0.082 Sum_probs=39.0
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHH
Q 014240 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECL 147 (428)
Q Consensus 82 ~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aL 147 (428)
..+.+-|+.+.+.++.+|+.++-.++-..|..-..+-.-++++..|.+++...++..++..++.-+
T Consensus 48 ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li 113 (226)
T 3zyq_A 48 NSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI 113 (226)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 345556667789999999999999988887410000011233344555665556665555554433
No 102
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=33.24 E-value=3.4e+02 Score=28.97 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhh-cCCChHHHHHHHHHHHHHH
Q 014240 73 VEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALK-SGFDSSKIASLLECLAVIT 151 (428)
Q Consensus 73 i~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~-d~s~~~~r~~~~~aLai~~ 151 (428)
..+...+|++.+..+.--.+.+.+.++++-+ +-+--+++=..-+|.|..+++ |..|......++.+|.++.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~--------sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~ 90 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSL--------SKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNII 90 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHT--------TTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHH--------HHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHh
Q ss_pred HHcCCChHHHH--------------------HHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccch
Q 014240 152 FVGGNDPEETE--------------------RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDS 211 (428)
Q Consensus 152 fv~~~d~~~~~--------------------~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~ 211 (428)
--...+.+... +.+..+.+.+.. .+-.+.-.|++.-..|++.-+...-..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----------~df~vR~~alqlL~~L~~~r~~~~Q~~ 160 (651)
T 3grl_A 91 SNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----------FDFHVRWPGVKLLTSLLKQLGPQVQQI 160 (651)
T ss_dssp CCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC----------CCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC----------ccHHHHHHHHHHHHHHHhcCcHHHHHH
Q ss_pred hh-HHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 212 KK-WQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 212 ~~-~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
-+ ....+|+|+.+|+.+.--||- |+|.||.++.+
T Consensus 161 Il~~p~gi~~Lv~lL~d~rE~iRn---eallLL~~Lt~ 195 (651)
T 3grl_A 161 ILVSPMGVSRLMDLLADSREVIRN---DGVLLLQALTR 195 (651)
T ss_dssp HHHSTTHHHHHHGGGGCSSHHHHH---HHHHHHHHHHT
T ss_pred HHhCcccHHHHHHHHhCchHHHHH---HHHHHHHHHhc
No 103
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=30.53 E-value=2.2e+02 Score=23.82 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=21.1
Q ss_pred HHHhhhcCCCHHHHHHHHHHHhHheeecCC
Q 014240 83 QCLSSIKRGSSREIALASHAIGLLALTVGY 112 (428)
Q Consensus 83 ~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~ 112 (428)
++.+-|+.+.+.++.+|+.++-.++-..|.
T Consensus 46 ai~Krl~~~n~~~ql~AL~LLe~~vkNcG~ 75 (140)
T 3ldz_A 46 SIMRRVNHKDPHVAMQALTLLGACVSNCGK 75 (140)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhcCH
Confidence 344456666778888888888887777763
No 104
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=29.60 E-value=1.3e+02 Score=23.73 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCCCceeEEEcCeeEEEchhHHHHHHHHHHHHhhhhHH
Q 014240 303 NLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFV 352 (428)
Q Consensus 303 s~FRdIl~~iE~g~~Pe~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~G~~ 352 (428)
...+++-...++|.....++.++++.+.........+=.+|+..|.+|+.
T Consensus 11 ~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~ 60 (120)
T 2if5_A 11 DILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAV 60 (120)
T ss_dssp HHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcc
Confidence 34555566667888889999999999999999999999999999998875
No 105
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=29.08 E-value=4.1e+02 Score=25.85 Aligned_cols=162 Identities=9% Similarity=0.091 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhh
Q 014240 53 REKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALK 132 (428)
Q Consensus 53 R~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~ 132 (428)
+..++..++-++..- .+|-.-....+.-.+.+.+...+-..+.+..-.+..++=. . +++. -+...|.+=++
T Consensus 44 c~~~l~kll~l~~~G--~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~----~e~i-Lv~Nsl~kDl~ 114 (355)
T 3tjz_B 44 CAHILTKILYLINQG--EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--A----EDVI-IVTSSLTKDMT 114 (355)
T ss_dssp HHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--S----SCGG-GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--H----HHHH-HHHHHHHhhcC
Confidence 456777776665543 2332222346667778888666655555554444444333 1 1233 34444555545
Q ss_pred cCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchh
Q 014240 133 SGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSK 212 (428)
Q Consensus 133 d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~ 212 (428)
++ ++-.|..++++|+ -+.. ++=++.....+...+. ..+|-|.-+|+-+..=|+-. .++
T Consensus 115 ~~-N~~iR~lALRtL~---~I~~--~~m~~~l~~~lk~~L~----------d~~pyVRk~A~l~~~kL~~~------~pe 172 (355)
T 3tjz_B 115 GK-EDSYRGPAVRALC---QITD--STMLQAIERYMKQAIV----------DKVPSVSSSALVSSLHLLKC------SFD 172 (355)
T ss_dssp SS-CHHHHHHHHHHHH---HHCC--TTTHHHHHHHHHHHHT----------CSSHHHHHHHHHHHHHHTTT------CHH
T ss_pred CC-cHhHHHHHHHHHh---cCCC--HHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHhcc------CHH
Confidence 43 3455655555543 3333 3223333333444332 25677888887776655432 234
Q ss_pred hHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240 213 KWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (428)
Q Consensus 213 ~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (428)
..+..++.+.++|.+.+.-|.. -+++++||+..
T Consensus 173 ~v~~~~~~l~~ll~d~n~~V~~---~Al~lL~ei~~ 205 (355)
T 3tjz_B 173 VVKRWVNEAQEAASSDNIMVQY---HALGLLYHVRK 205 (355)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHH---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCccHHH---HHHHHHHHHHh
Confidence 5567788899999999988873 78999999964
No 106
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=28.56 E-value=1.9e+02 Score=24.88 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=39.4
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHH-HhhhHHHHHHhhcCCChHHHHHHHHHH
Q 014240 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREIL-EESVAPISQALKSGFDSSKIASLLECL 147 (428)
Q Consensus 82 ~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~-~~~~~~L~~~l~d~s~~~~r~~~~~aL 147 (428)
..+.+-|+.+.+.++.+|+.++-.++-..|..- -.+|- +++..-|.+++....++.++..++..+
T Consensus 55 ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F-h~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 55 KAIMKRVNHKVPHVALQALTLLGACVANCGKIF-HLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH-HHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH-HHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 344555667778899999999988888887410 00111 344445566666445666666655443
No 107
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=26.67 E-value=1.3e+02 Score=23.76 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCCCceeEEEcCeeEEEchhHHHHHHHHHHHHhhhhH
Q 014240 303 NLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGF 351 (428)
Q Consensus 303 s~FRdIl~~iE~g~~Pe~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~G~ 351 (428)
.++.++-...++|.....++++|++.+.......-.+=..|+..+.+|+
T Consensus 10 ~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~ 58 (119)
T 3b84_A 10 RVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS 58 (119)
T ss_dssp HHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT
T ss_pred HHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC
Confidence 4456666667888999999999999999999999999999999999886
No 108
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=26.21 E-value=1.7e+02 Score=23.06 Aligned_cols=60 Identities=8% Similarity=0.109 Sum_probs=47.4
Q ss_pred CCccchhhHHHHHHHHHHHHHHhcCCCCceeEEEcCeeEEEchhHHHHHHHHHHHHhhhh
Q 014240 291 KGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGG 350 (428)
Q Consensus 291 K~~aKkDrk~qRs~FRdIl~~iE~g~~Pe~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~G 350 (428)
+...-++.......+..+-...++|.....++.++++.+.......-.+=.+|+..|.++
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~ 64 (116)
T 3fkc_A 5 KLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA 64 (116)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC
T ss_pred ceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC
Confidence 333334445555667777777888999999999999999999999988889999998876
No 109
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=25.95 E-value=1.1e+02 Score=24.80 Aligned_cols=49 Identities=6% Similarity=0.071 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCCceeEEEcCeeEEEchhHHHHHHHHHHHHhhhhHH
Q 014240 304 LFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFV 352 (428)
Q Consensus 304 ~FRdIl~~iE~g~~Pe~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~G~~ 352 (428)
...++...+++|.....++.++++.+.+.......+=.+|+..|.+++.
T Consensus 12 l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~ 60 (145)
T 4eoz_A 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME 60 (145)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSH
T ss_pred HHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCc
Confidence 3455666677888889999999999999999999999999999998864
No 110
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=25.39 E-value=3.8e+02 Score=26.58 Aligned_cols=113 Identities=13% Similarity=0.134 Sum_probs=66.6
Q ss_pred HHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHH
Q 014240 118 EILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAW 197 (428)
Q Consensus 118 ei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW 197 (428)
.++++++|.|.....+. +...|..++.=++=.|. .+.+-+..+++.++.++.. .++.|+=.++.+-
T Consensus 59 sLl~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~---~~~el~~~~l~~L~~LL~d----------~d~~V~K~~I~~~ 124 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADK-SIEVRKFVIGFIEEACK---RDIELLLKLIANLNMLLRD----------ENVNVVKKAILTM 124 (386)
T ss_dssp GGGGGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHTC----------SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence 46777777777766655 45667666655543332 4667777888888887752 3444554444444
Q ss_pred HHhH----hcC--CCC--ccchhhHHhh---HHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240 198 SFLL----TTM--DGC--SLDSKKWQQS---ISYFSTLLDKDDRSIRIAAGEALALIL 244 (428)
Q Consensus 198 ~lLl----T~~--~~~--~~~~~~~~~~---l~~L~~lL~s~d~~VRiAAGEaiALl~ 244 (428)
+-+. -.+ .+. ......|+.. -..+..++++.+..||+.|--.+--+.
T Consensus 125 tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 125 TQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 4332 111 111 1112456543 345666789999999999876554444
No 111
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=25.26 E-value=4.8e+02 Score=29.16 Aligned_cols=177 Identities=18% Similarity=0.138 Sum_probs=95.3
Q ss_pred hHHHHHHHhcc----cchHHHHHHHHHHHHHHHhhhhhh--hh-hhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheee
Q 014240 37 LLDEALDALYE----KRGSTREKALSSIIEAFNNTLQHQ--FV-EKKFATLLHQCLSSIKRGSSREIALASHAIGLLALT 109 (428)
Q Consensus 37 ~l~~~id~l~e----Kr~stR~~aL~~l~~al~~~~~~~--fi-~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~ 109 (428)
.++.+.+.+.. ++...|+.++-++-.+. +++..+ .+ .+-+..+.+.+...+.++..+|..+++++||-+..-
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV-~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLV-FRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHH-HHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHH-HHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 45555555542 23345777766654333 333211 11 122455666677777888888999999999996651
Q ss_pred cCCCCchHHHHHhhhHHHHHHhhcC-----CCh-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccC
Q 014240 110 VGYGENSREILEESVAPISQALKSG-----FDS-SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVAT 183 (428)
Q Consensus 110 lg~~~~~eei~~~~~~~L~~~l~d~-----s~~-~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~ 183 (428)
.+.++|.+.+... +.+ ..|.+|+.||--+. +..+.. .-++++.++...
T Consensus 471 ------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~---~~~p~~---v~~il~~i~~n~-------- 524 (1056)
T 1lsh_A 471 ------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA---KRDPRK---VQEIVLPIFLNV-------- 524 (1056)
T ss_dssp ------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG---GTCHHH---HHHHHHHHHHCT--------
T ss_pred ------------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh---hhchHH---HHHHHHHHhcCC--------
Confidence 2455666666531 222 46677777764333 344433 344577777542
Q ss_pred CCCHHHHHHHHHHHHHhHhcCCCCcc------------chhhHHhhHHHHHhhhcCCChH---HHHHHHHHHHHH
Q 014240 184 RPSAPIITAMVSAWSFLLTTMDGCSL------------DSKKWQQSISYFSTLLDKDDRS---IRIAAGEALALI 243 (428)
Q Consensus 184 ~~~~~l~~AAL~aW~lLlT~~~~~~~------------~~~~~~~~l~~L~~lL~s~d~~---VRiAAGEaiALl 243 (428)
..++.|-.||+... +-+.|+... +.....=....|..+..++++. ++.+|--++-++
T Consensus 525 ~e~~EvRiaA~~~L---m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la~~~~~a~~~l 596 (1056)
T 1lsh_A 525 AIKSELRIRSCIVF---FESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKML 596 (1056)
T ss_dssp TSCHHHHHHHHHHH---HHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHHHHHHHTTS
T ss_pred CCChHHHHHHHHHH---HHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh
Confidence 35567877776543 333343211 1111122245566677777654 444444444443
No 112
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=23.92 E-value=1.5e+02 Score=23.68 Aligned_cols=51 Identities=6% Similarity=0.034 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCCceeEEEcCeeEEEchhHHHHHHHHHHHHhhhhHHh
Q 014240 303 NLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVK 353 (428)
Q Consensus 303 s~FRdIl~~iE~g~~Pe~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~G~~~ 353 (428)
.+.+++-...++|.....++.++++.+.......-.+=.+|+..|.+++..
T Consensus 15 ~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e 65 (124)
T 2ihc_A 15 NVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG 65 (124)
T ss_dssp HHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---
T ss_pred HHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCC
Confidence 445666666678888899999999999999999999999999999988753
No 113
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=23.38 E-value=1.6e+02 Score=25.60 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHH-HhhhHHHHHHhhc-----CCChHHHHHHHHHHH
Q 014240 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREIL-EESVAPISQALKS-----GFDSSKIASLLECLA 148 (428)
Q Consensus 81 ~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~-~~~~~~L~~~l~d-----~s~~~~r~~~~~aLa 148 (428)
+..+.+-|+.+...++.+|+.++-.++-..|..-. .+|- ++++.-|.+++.. .+...+|..++..+-
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh-~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFH-NEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH-HHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH-HHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 34555667778899999999999998888873100 0111 2334445566542 234455655544433
No 114
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.21 E-value=4e+02 Score=23.81 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCC---HHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHH
Q 014240 53 REKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS---SREIALASHAIGLLALTVGYGENSREILEESVAPISQ 129 (428)
Q Consensus 53 R~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~---~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~ 129 (428)
....+-.++.||.++.- -|++...-.|+..++.|+=..+ ..=+..|+++++.+|-+.|..- ..+...+...|.+
T Consensus 62 ~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y--~~L~~RI~~tl~k 138 (196)
T 4atg_A 62 VLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY--KTLAPRVLKTLKG 138 (196)
T ss_dssp HHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS--TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC--chHHHHHHHHHHH
Confidence 33444444555543321 2455556667777777764322 3236799999999999998642 3555566667777
Q ss_pred HhhcCCCh-HHHHHHHHHH
Q 014240 130 ALKSGFDS-SKIASLLECL 147 (428)
Q Consensus 130 ~l~d~s~~-~~r~~~~~aL 147 (428)
++.|+..+ ...-.|+.+|
T Consensus 139 ~l~dp~~~l~t~YGAi~GL 157 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYCL 157 (196)
T ss_dssp HHTCTTSCHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHH
Confidence 77777654 4444444443
No 115
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=23.20 E-value=3.4e+02 Score=22.96 Aligned_cols=66 Identities=11% Similarity=-0.016 Sum_probs=37.3
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcC-----CChHHHHHHHHHH
Q 014240 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSG-----FDSSKIASLLECL 147 (428)
Q Consensus 82 ~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~-----s~~~~r~~~~~aL 147 (428)
.++.+-|+.+.+.++.+|+.++-.++-..|..-..+---+++..-|.+++.+. +...+|..++..+
T Consensus 51 ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 51 RLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 34555566677889999999998888877732100011123444466666542 3445555554333
No 116
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=23.06 E-value=3.4e+02 Score=22.87 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=38.7
Q ss_pred HHHhhhcCCCHHHHHHHHHHHhHheeecCCCCchHHH-HHhhhHHHHHHhhcC-----CChHHHHHHHHHH
Q 014240 83 QCLSSIKRGSSREIALASHAIGLLALTVGYGENSREI-LEESVAPISQALKSG-----FDSSKIASLLECL 147 (428)
Q Consensus 83 ~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~eei-~~~~~~~L~~~l~d~-----s~~~~r~~~~~aL 147 (428)
++.+-|+.+.+.++.+|+.++-.++-..|..-. .+| -+++..-|.+++... +...++..++.-+
T Consensus 42 ai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh-~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 42 LLAHKIQSPQEKEALYALTVLEMCMNHCGEKFH-SEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-HHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH-HHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 445556677899999999999998888884210 111 134444566666541 3445655554443
No 117
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=22.96 E-value=4.2e+02 Score=30.00 Aligned_cols=100 Identities=24% Similarity=0.252 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCC---HHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHH
Q 014240 52 TREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS---SREIALASHAIGLLALTVGYGENSREILEESVAPIS 128 (428)
Q Consensus 52 tR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~---~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~ 128 (428)
.|.+|-..+... ... .++.+...+..|...+...+.++. ..|+..-..++++++-++++.+.-..+++.+.+|+.
T Consensus 600 vr~~a~~al~~L-~~~-~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~ 677 (1204)
T 3a6p_A 600 VRRHACSSIIKM-CRD-YPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA 677 (1204)
T ss_dssp HHHHHHHHHHHH-HHH-CHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHH-hhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 366554444322 222 223333455666666666565555 889988888888887666764434444666666664
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 014240 129 QALKSGFDSSKIASLLECLAVITFVGGN 156 (428)
Q Consensus 129 ~~l~d~s~~~~r~~~~~aLai~~fv~~~ 156 (428)
+. ..++.-+......-+.+.++|-.
T Consensus 678 ~~---w~~~~~~~~~s~~~~f~~~~G~~ 702 (1204)
T 3a6p_A 678 SI---WLSQDMHRVLSDVDAFIAYVGTD 702 (1204)
T ss_dssp HH---HSCHHHHHHHHCHHHHHHHHTSS
T ss_pred HH---HccHHHHHhhcCHHHHHHHhCCC
Confidence 44 44433322233334677777654
No 118
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=22.59 E-value=1.7e+02 Score=23.18 Aligned_cols=51 Identities=2% Similarity=0.078 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCCCceeEEEcCeeEEEchhHHHHHHHHHHHHhhhhHHh
Q 014240 303 NLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVK 353 (428)
Q Consensus 303 s~FRdIl~~iE~g~~Pe~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~G~~~ 353 (428)
.++.++-...++|.....++.++++.+.......-.+=.+|+..|.+++..
T Consensus 15 ~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e 65 (127)
T 1r29_A 15 DVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR 65 (127)
T ss_dssp HHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC
Confidence 344555556678888899999999999999999999999999999888754
No 119
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=22.19 E-value=1.8e+02 Score=22.61 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCCCceeEEEcCeeEEEchhHHHHHHHHHHHHhhhh
Q 014240 302 RNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGG 350 (428)
Q Consensus 302 Rs~FRdIl~~iE~g~~Pe~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~G 350 (428)
..++.++-...++|.....++.++++.+.......-.+=.+|+..|.++
T Consensus 7 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~ 55 (116)
T 2vpk_A 7 EHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST 55 (116)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC
Confidence 3456666777788999999999999999999999999999999999887
No 120
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=22.04 E-value=3.5e+02 Score=29.36 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=78.4
Q ss_pred hhhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCC
Q 014240 34 KDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113 (428)
Q Consensus 34 ~~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~ 113 (428)
.++.++..|-.+.+|.++.=+.-|..|...+.. .+..-+..+++.+.+|+-.--.+ ....+.+++++-....
T Consensus 8 ~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~-----~l~~~r~~i~~~l~~~~~~~P~K-t~vyAaLVgllN~k~p-- 79 (771)
T 1h2v_C 8 TEDHLESLICKVGEKSACSLESNLEGLAGVLEA-----DLPNYKSKILRLLCTVARLLPEK-LTIYTTLVGLLNARNY-- 79 (771)
T ss_dssp --CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHcCCh--
Confidence 357799999999999876555556666555543 34456788888888887433222 4556678888776655
Q ss_pred CchHHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHh
Q 014240 114 ENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG--NDPEETERTMQIMWQIV 172 (428)
Q Consensus 114 ~~~eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~--~d~~~~~~~m~~l~~i~ 172 (428)
+-++++.+.+...+...+..+.-..+| .++..| ++.+++ -.+..+...++.|.+..
T Consensus 80 e~G~~lv~~l~~~f~~~l~~~~~~~~k-~~lrFL--a~L~n~~Vv~~~~il~lL~~Ll~~~ 137 (771)
T 1h2v_C 80 NFGGEFVEAMIRQLKESLKANNYNEAV-YLVRFL--SDLVNCHVIAAPSMVAMFENFVSVT 137 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHH--HHHHHTTSBCHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHHHccChHHHH-HHHHHH--HHhccCCeecHHHHHHHHHHHHHhh
Confidence 336788888877777777754322221 122222 333333 35666667777666644
No 121
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=20.08 E-value=1.6e+02 Score=23.93 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCCCceeEEEcCeeEEEchhHHHHHHHHHHHHhhhhH
Q 014240 302 RNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGF 351 (428)
Q Consensus 302 Rs~FRdIl~~iE~g~~Pe~~ik~g~e~L~idsW~~~~ql~~lr~~Lg~G~ 351 (428)
..++.++-...++|.....+++++++.+.......-.+=.+|+..|.+++
T Consensus 10 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~ 59 (135)
T 2yy9_A 10 VRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT 59 (135)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC---
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC
Confidence 45566777777889999999999999999999999999999999999887
Done!