Query 014241
Match_columns 428
No_of_seqs 279 out of 1988
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 3.5E-31 1.2E-35 272.3 19.1 172 252-423 91-293 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 3E-31 1E-35 270.6 12.8 171 253-423 77-278 (423)
3 3ugo_A RNA polymerase sigma fa 100.0 9.1E-31 3.1E-35 249.8 14.9 172 253-424 5-207 (245)
4 3iyd_F RNA polymerase sigma fa 99.7 7.6E-18 2.6E-22 178.6 2.2 106 316-421 358-468 (613)
5 1sig_A Sigma70, RNA polymerase 99.6 1.1E-15 3.7E-20 150.3 9.0 85 317-401 250-339 (339)
6 1l0o_C Sigma factor; bergerat 99.4 3.2E-14 1.1E-18 128.0 2.9 96 327-423 27-123 (243)
7 1rp3_A RNA polymerase sigma fa 99.4 3.1E-12 1.1E-16 115.3 11.5 92 327-421 11-106 (239)
8 1or7_A Sigma-24, RNA polymeras 98.6 4.4E-08 1.5E-12 86.0 7.4 84 316-402 10-95 (194)
9 2q1z_A RPOE, ECF SIGE; ECF sig 98.6 2.8E-08 9.7E-13 86.7 5.2 90 314-404 11-103 (184)
10 3mzy_A RNA polymerase sigma-H 98.3 2.6E-07 9E-12 78.1 3.7 50 352-402 1-51 (164)
11 2o7g_A Probable RNA polymerase 98.1 4.1E-06 1.4E-10 68.6 6.1 84 319-405 14-99 (112)
12 1h3l_A RNA polymerase sigma fa 97.8 1.3E-05 4.5E-10 62.7 4.4 74 325-400 9-83 (87)
13 2lfw_A PHYR sigma-like domain; 96.1 0.00021 7.3E-09 62.0 -4.0 67 331-399 4-71 (157)
14 3n0r_A Response regulator; sig 95.0 0.0027 9.3E-08 60.6 -1.2 71 327-399 20-91 (286)
15 3iyd_F RNA polymerase sigma fa 94.6 0.0096 3.3E-07 63.3 1.7 34 253-286 94-127 (613)
16 2jt1_A PEFI protein; solution 59.0 12 0.00042 29.5 4.6 30 294-323 16-45 (77)
17 3knw_A Putative transcriptiona 42.3 1.5E+02 0.005 24.6 11.4 74 295-368 26-101 (212)
18 3mn2_A Probable ARAC family tr 40.9 40 0.0014 26.6 5.1 36 290-325 6-41 (108)
19 3nxc_A HTH-type protein SLMA; 40.7 1.5E+02 0.0053 24.4 9.2 64 297-360 39-103 (212)
20 3qbm_A TETR transcriptional re 40.2 1.5E+02 0.0052 24.2 9.2 74 294-367 18-93 (199)
21 2k9s_A Arabinose operon regula 38.9 1.4E+02 0.0047 23.4 8.1 36 290-325 7-43 (107)
22 2zc2_A DNAD-like replication p 38.7 36 0.0012 26.1 4.3 56 298-357 13-75 (78)
23 3oio_A Transcriptional regulat 37.6 1.3E+02 0.0045 23.7 7.8 36 290-325 11-46 (113)
24 3eup_A Transcriptional regulat 36.2 1.1E+02 0.0036 25.2 7.2 70 302-371 31-101 (204)
25 3oou_A LIN2118 protein; protei 34.0 60 0.0021 25.6 5.1 36 291-326 10-45 (108)
26 3pas_A TETR family transcripti 32.8 2E+02 0.0067 23.3 9.1 63 298-360 23-86 (195)
27 3f1b_A TETR-like transcription 32.7 2E+02 0.0069 23.4 11.4 67 294-360 25-92 (203)
28 3ppb_A Putative TETR family tr 32.6 2E+02 0.0067 23.3 11.7 66 295-360 21-87 (195)
29 3osj_A Phycobilisome LCM core- 31.8 2E+02 0.0068 25.7 8.4 57 313-369 60-127 (147)
30 3lsg_A Two-component response 31.6 1.8E+02 0.0061 22.5 8.1 34 292-325 8-42 (103)
31 3dcf_A Transcriptional regulat 30.9 2.3E+02 0.0077 23.4 11.3 75 295-369 43-119 (218)
32 3rd3_A Probable transcriptiona 30.7 2.2E+02 0.0074 23.1 11.6 84 295-378 22-108 (197)
33 1sgm_A Putative HTH-type trans 30.2 2.2E+02 0.0074 23.0 8.3 74 295-368 18-94 (191)
34 1bl0_A Protein (multiple antib 29.6 1.8E+02 0.006 23.7 7.4 35 291-325 16-50 (129)
35 3mkl_A HTH-type transcriptiona 28.4 68 0.0023 25.8 4.6 35 291-325 12-46 (120)
36 3ni7_A Bacterial regulatory pr 28.4 2.9E+02 0.0099 23.9 9.8 33 293-325 17-50 (213)
37 3kz9_A SMCR; transcriptional r 27.7 2.5E+02 0.0085 22.9 11.5 73 295-367 29-103 (206)
38 3jsj_A Putative TETR-family tr 27.3 2.5E+02 0.0087 22.8 11.1 76 295-370 21-97 (190)
39 3aqt_A Bacterial regulatory pr 26.8 3.2E+02 0.011 23.8 9.4 42 295-336 58-100 (245)
40 3k2z_A LEXA repressor; winged 26.6 1E+02 0.0034 27.2 5.8 26 298-323 20-45 (196)
41 3pru_C Phycobilisome 32.1 kDa 24.4 1.5E+02 0.0052 26.7 6.4 57 313-369 54-121 (154)
42 3him_A Probable transcriptiona 23.7 3E+02 0.01 22.5 9.1 66 295-360 28-94 (211)
43 3ugo_A RNA polymerase sigma fa 23.6 17 0.00058 34.1 0.0 40 287-326 198-239 (245)
44 3mnl_A KSTR, transcriptional r 23.4 2.7E+02 0.0093 22.7 7.6 41 302-342 40-80 (203)
45 1jko_C HIN recombinase, DNA-in 22.9 1.1E+02 0.0039 19.9 4.2 23 303-325 22-44 (52)
46 2v57_A TETR family transcripti 22.6 3.1E+02 0.011 22.2 9.2 47 301-347 31-77 (190)
47 3bni_A Putative TETR-family tr 22.3 3.7E+02 0.013 23.0 11.7 78 294-371 54-135 (229)
48 3he0_A Transcriptional regulat 20.8 3.4E+02 0.012 22.0 9.7 66 295-360 23-89 (196)
49 2g7s_A Transcriptional regulat 20.5 3.3E+02 0.011 21.8 10.3 79 294-372 19-99 (194)
50 3f2g_A Alkylmercury lyase; MER 20.1 94 0.0032 29.3 4.3 26 299-324 33-58 (220)
51 3mvp_A TETR/ACRR transcription 20.0 3.7E+02 0.013 22.1 8.1 47 296-342 39-86 (217)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=99.97 E-value=3.5e-31 Score=272.33 Aligned_cols=172 Identities=34% Similarity=0.558 Sum_probs=150.6
Q ss_pred CCCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhhCCCCcHHHHHH---
Q 014241 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS------------------KLQSQFGREPTLIEWAK--- 310 (428)
Q Consensus 252 ~~~d~l~~YL~ei~~~~LLT~EEE~eL~~~Iq~l~~Le~~~~------------------~L~~~lGr~Pt~~ewA~--- 310 (428)
...|+++.||++|+++|+||++||++|+++|+.++.++.... .....+|+.|+..+|+.
T Consensus 91 ~~~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 91 STSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 456899999999999999999999999999999765443221 12234567888888743
Q ss_pred ---------HhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCch
Q 014241 311 ---------AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRF 380 (428)
Q Consensus 311 ---------a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rF 380 (428)
+.|++..+|...+.+|..|+++||.+|+++|++||++|.++|.+++|||| |+||||+|+++|||++|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 23567788999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHhcCCCcccchhHHHhhHHHHHHHHHh
Q 014241 381 ASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYIFKFYVF 423 (428)
Q Consensus 381 STYA~~wIR~aI~raIr~qsr~IRlP~~~~e~l~ri~r~~~~L 423 (428)
+|||+||||++|.++|+++.+.+|+|.|+.+.++++.+....|
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l 293 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQL 293 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887765543
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=99.97 E-value=3e-31 Score=270.57 Aligned_cols=171 Identities=36% Similarity=0.569 Sum_probs=145.9
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------------------HHhhhCCCCcHHH-------
Q 014241 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------LQSQFGREPTLIE------- 307 (428)
Q Consensus 253 ~~d~l~~YL~ei~~~~LLT~EEE~eL~~~Iq~l~~Le~~~~~------------------L~~~lGr~Pt~~e------- 307 (428)
..|+++.||++|+++|+||++||++|+++|+.+..+...... .....|+.|+..+
T Consensus 77 ~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (423)
T 2a6h_F 77 TSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTV 156 (423)
T ss_dssp THHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHHH
T ss_pred CCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhhh
Confidence 568999999999999999999999999999997544332111 0112335555443
Q ss_pred --HH---HHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchh
Q 014241 308 --WA---KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFA 381 (428)
Q Consensus 308 --wA---~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFS 381 (428)
|+ +++|++..+|...+..|..|+++||.+|+++|+++|++|.++|.+++|||| |++|||+|+++|||++|++|+
T Consensus 157 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~Fs 236 (423)
T 2a6h_F 157 EEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 236 (423)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCHH
T ss_pred hhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCHH
Confidence 32 235677888999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCcccchhHHHhhHHHHHHHHHh
Q 014241 382 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYIFKFYVF 423 (428)
Q Consensus 382 TYA~~wIR~aI~raIr~qsr~IRlP~~~~e~l~ri~r~~~~L 423 (428)
|||+||||++|.++|+++.++||+|.|+.+.++++.+....|
T Consensus 237 tYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l 278 (423)
T 2a6h_F 237 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQL 278 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988765543
No 3
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=99.97 E-value=9.1e-31 Score=249.79 Aligned_cols=172 Identities=34% Similarity=0.537 Sum_probs=131.5
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHH--h-----------------------hhCCCCcHH
Q 014241 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE-KEKSKLQ--S-----------------------QFGREPTLI 306 (428)
Q Consensus 253 ~~d~l~~YL~ei~~~~LLT~EEE~eL~~~Iq~l~~Le-~~~~~L~--~-----------------------~lGr~Pt~~ 306 (428)
.+|+++.||++|+++||||++||++|+++|+.++... .+..... . ..+.+|+..
T Consensus 5 ~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~ 84 (245)
T 3ugo_A 5 TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV 84 (245)
T ss_dssp CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHH
T ss_pred CCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhH
Confidence 4799999999999999999999999999999987532 2221100 0 014689999
Q ss_pred HHHHHhcCCH----HHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchh
Q 014241 307 EWAKAIGLSC----RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFA 381 (428)
Q Consensus 307 ewA~a~g~s~----~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFS 381 (428)
+||.+.|++. .+|.+.+++|..|+++|+..|+++|.++|++|.+.+.+.+||+| |++||++|+++||+++|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~ 164 (245)
T 3ugo_A 85 EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 164 (245)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 9999999864 45667788899999999999999999999999999999999999 999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCcccchhHHHhhHHHHHHHHHhh
Q 014241 382 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYIFKFYVFS 424 (428)
Q Consensus 382 TYA~~wIR~aI~raIr~qsr~IRlP~~~~e~l~ri~r~~~~Ls 424 (428)
||+.||||++|.++++++.+.+++|.++.+.++++.++...|.
T Consensus 165 tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~ 207 (245)
T 3ugo_A 165 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQ 207 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888766553
No 4
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.67 E-value=7.6e-18 Score=178.65 Aligned_cols=106 Identities=38% Similarity=0.751 Sum_probs=97.4
Q ss_pred HHHHHHHhhccH-HH---HHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHH
Q 014241 316 CRDLKSELHSGN-SS---REKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 390 (428)
Q Consensus 316 ~~eL~~~l~~G~-~A---re~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~ 390 (428)
..+|...+..|+ .| +++|+..|+++|+++|++|.+++.+.+||+| |++||++++++||+.+|++|+||++||||+
T Consensus 358 ~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn 437 (613)
T 3iyd_F 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 (613)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHH
Confidence 456777777776 45 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccchhHHHhhHHHHHHHH
Q 014241 391 TIRKAIFQHSRTIRLPVMTFNLSPIYIFKFY 421 (428)
Q Consensus 391 aI~raIr~qsr~IRlP~~~~e~l~ri~r~~~ 421 (428)
+|.++++++.+.+|+|.|+.+.++++.+...
T Consensus 438 ~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~ 468 (613)
T 3iyd_F 438 AITRSIADQARTIRIPVHMIETINKLNRISR 468 (613)
T ss_dssp HHHHHTTTSCSSSCCCSHHHHTTTTTTTTTT
T ss_pred HHHHHHHhcCcceeCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888766544
No 5
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.60 E-value=1.1e-15 Score=150.33 Aligned_cols=85 Identities=41% Similarity=0.911 Sum_probs=76.3
Q ss_pred HHHHHHhhccH----HHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHHH
Q 014241 317 RDLKSELHSGN----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 391 (428)
Q Consensus 317 ~eL~~~l~~G~----~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~a 391 (428)
..|...+..|+ .|+++|+..|+++|.++|++|.+.+.+.+||+| |++||++++++||+.+|++|+||++|||++.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 34555555555 699999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 014241 392 IRKAIFQHSR 401 (428)
Q Consensus 392 I~raIr~qsr 401 (428)
|.++++++.+
T Consensus 330 ~~~~lr~~~r 339 (339)
T 1sig_A 330 ITRSIADQAR 339 (339)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHhcC
Confidence 9999998753
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.43 E-value=3.2e-14 Score=128.01 Aligned_cols=96 Identities=26% Similarity=0.422 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHHHHHHHHHhcCCCccc
Q 014241 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 405 (428)
Q Consensus 327 ~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~aI~raIr~qsr~IRl 405 (428)
..+.+.|+..|.++|..+|.+|.+.+.+.+||+| |+++|++++++||+.+|..|.+|+..+|++.+.++++++. .+++
T Consensus 27 ~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~~~ 105 (243)
T 1l0o_C 27 QEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKV 105 (243)
T ss_dssp -------------------------------------------------------------------------CC-CCTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-CccC
Confidence 4789999999999999999999998899999999 9999999999999999999999999999999999999987 7899
Q ss_pred chhHHHhhHHHHHHHHHh
Q 014241 406 PVMTFNLSPIYIFKFYVF 423 (428)
Q Consensus 406 P~~~~e~l~ri~r~~~~L 423 (428)
|.++.....++.+....+
T Consensus 106 ~~~~~~~~~~~~~~~~~~ 123 (243)
T 1l0o_C 106 SRSLKEMGNKIRKAKDEL 123 (243)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 999988888877766544
No 7
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.36 E-value=3.1e-12 Score=115.28 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHcc---cCCCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHHHHHHHHHhcCCC
Q 014241 327 NSSREKLINANLRLVVHVAKQYQ---GRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 402 (428)
Q Consensus 327 ~~Are~LI~~nLrLV~sIAkrY~---~rGld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~aI~raIr~qsr~ 402 (428)
..++++|+..|.++|..+|.+|. +.+.+.+||+| |++||++++++||+.+|.+|.||+.+||++.|.++++++.+
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~~- 89 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLDF- 89 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSST-
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcCc-
Confidence 45899999999999999999998 56889999999 99999999999999999999999999999999999998764
Q ss_pred cccchhHHHhhHHHHHHHH
Q 014241 403 IRLPVMTFNLSPIYIFKFY 421 (428)
Q Consensus 403 IRlP~~~~e~l~ri~r~~~ 421 (428)
.|.+......++.++..
T Consensus 90 --~~~~~~~~~~~~~~~~~ 106 (239)
T 1rp3_A 90 --GSRQVREKERRIKEVVE 106 (239)
T ss_dssp --TCHHHHHHHHHHHHHHH
T ss_pred --cchHHHHHHHHHHHHHH
Confidence 57766665555544433
No 8
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=98.64 E-value=4.4e-08 Score=86.01 Aligned_cols=84 Identities=14% Similarity=0.258 Sum_probs=74.0
Q ss_pred HHHHHHHhhcc-HHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHHHHH
Q 014241 316 CRDLKSELHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 393 (428)
Q Consensus 316 ~~eL~~~l~~G-~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~aI~ 393 (428)
+.+|...+..| ..+.+.|+..|.+.|..+|.+|.+ ..+.+|++| +.+++++++++|++.. .|.+|+...+++.+.
T Consensus 10 ~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~ 86 (194)
T 1or7_A 10 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAK 86 (194)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHH
Confidence 34555555555 589999999999999999999999 899999999 9999999999999875 599999999999999
Q ss_pred HHHHhcCCC
Q 014241 394 KAIFQHSRT 402 (428)
Q Consensus 394 raIr~qsr~ 402 (428)
+++++..+.
T Consensus 87 d~~R~~~~~ 95 (194)
T 1or7_A 87 NYLVAQGRR 95 (194)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcc
Confidence 999987654
No 9
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=98.61 E-value=2.8e-08 Score=86.74 Aligned_cols=90 Identities=9% Similarity=0.028 Sum_probs=78.5
Q ss_pred CCHHHHHHH-hhcc-HHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHH
Q 014241 314 LSCRDLKSE-LHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 390 (428)
Q Consensus 314 ~s~~eL~~~-l~~G-~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~ 390 (428)
++..+|... +..| ..+.+.|+..|.+.|..++.+|.+...+.+|++| +.+.+++++++|++..| .|.+|+...+++
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 456666666 5554 5899999999999999999999888889999999 99999999999999886 799999999999
Q ss_pred HHHHHHHhcCCCcc
Q 014241 391 TIRKAIFQHSRTIR 404 (428)
Q Consensus 391 aI~raIr~qsr~IR 404 (428)
.+.+++++..+...
T Consensus 90 ~~~d~~R~~~~~~~ 103 (184)
T 2q1z_A 90 RRIDGLRKDRQPEP 103 (184)
T ss_dssp SCCTTTCSSSCCCC
T ss_pred HHHHHHHhhccccc
Confidence 99999998765433
No 10
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=98.32 E-value=2.6e-07 Score=78.12 Aligned_cols=50 Identities=28% Similarity=0.558 Sum_probs=43.1
Q ss_pred CCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHHHHHHHHHhcCCC
Q 014241 352 GISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 402 (428)
Q Consensus 352 Gld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~aI~raIr~qsr~ 402 (428)
|.+.+||+| |+++|++++++||+.+ ..|.+|+..+|++.+.++++++.+.
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~ 51 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQ 51 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcc
Confidence 678999999 9999999999999998 7899999999999999999987543
No 11
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.10 E-value=4.1e-06 Score=68.56 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=66.5
Q ss_pred HHHHhh-ccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHHHHHHHH
Q 014241 319 LKSELH-SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI 396 (428)
Q Consensus 319 L~~~l~-~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~aI~raI 396 (428)
|...+. ++..+.+.|+..|.+.+..+|.++ +...+-+|++| ..+.+++.+.+|++. ..|.+|...-+++.+.+++
T Consensus 14 l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~ 90 (112)
T 2o7g_A 14 LALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADHI 90 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHH
Confidence 334444 445899999999999999999999 77788999999 999999999999964 3799999999999999999
Q ss_pred HhcCCCccc
Q 014241 397 FQHSRTIRL 405 (428)
Q Consensus 397 r~qsr~IRl 405 (428)
|++.+..++
T Consensus 91 R~~~~~~~~ 99 (112)
T 2o7g_A 91 RHVRSRPRT 99 (112)
T ss_dssp C--------
T ss_pred HHhhccccc
Confidence 987654333
No 12
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=97.84 E-value=1.3e-05 Score=62.67 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHHHHHHHHHhcC
Q 014241 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 400 (428)
Q Consensus 325 ~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~aI~raIr~qs 400 (428)
++..+.++|+..|.+.+..+|.++.+...+-+|++| ..+.+++.+++|++. ..|.+|+...+++.+.+.++++.
T Consensus 9 g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 9 ERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999887789999999 999999999999875 47999999999999998887654
No 13
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=96.11 E-value=0.00021 Score=62.00 Aligned_cols=67 Identities=7% Similarity=0.053 Sum_probs=60.3
Q ss_pred HHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHHHHHHHHHhc
Q 014241 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 399 (428)
Q Consensus 331 e~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~aI~raIr~q 399 (428)
+.|+..|.+.|..+|.++.+...+.+|++| +.+.+++.+++|++.. .|.+|++.-+++.+.+++++.
T Consensus 4 ~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~ 71 (157)
T 2lfw_A 4 GQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADG 71 (157)
T ss_dssp GGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhcc
Confidence 467888999999999999887788999999 9999999999999763 699999999999999999875
No 14
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=95.00 E-value=0.0027 Score=60.60 Aligned_cols=71 Identities=8% Similarity=-0.037 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHhcCCCCCCchhcHHHHHHHHHHHHHHHhc
Q 014241 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 399 (428)
Q Consensus 327 ~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVekFDpskG~rFSTYA~~wIR~aI~raIr~q 399 (428)
..+.++|+..|.+.+..+|.+|.+..-+-+|++| ..+-+++...+|++. ..|.+|.+.-.++...+.+|..
T Consensus 20 ~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~ 91 (286)
T 3n0r_A 20 EMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQL 91 (286)
T ss_dssp CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC--
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhcccc
Confidence 3678999999999999999999887788999999 999999999999875 4699999999999888887763
No 15
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=94.63 E-value=0.0096 Score=63.28 Aligned_cols=34 Identities=32% Similarity=0.570 Sum_probs=13.6
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHH
Q 014241 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286 (428)
Q Consensus 253 ~~d~l~~YL~ei~~~~LLT~EEE~eL~~~Iq~l~ 286 (428)
.+||+++||++||+.||||+++|++|+++|..+.
T Consensus 94 ~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~ 127 (613)
T 3iyd_F 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 (613)
T ss_dssp -----------C--------CSSSTTTHHHHHHH
T ss_pred CCCcHHHHHHHhcccccCCchhHHHHHHHHHHhH
Confidence 6899999999999999999999999999999853
No 16
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=59.03 E-value=12 Score=29.52 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=22.5
Q ss_pred HHHhhhCCCCcHHHHHHHhcCCHHHHHHHh
Q 014241 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSEL 323 (428)
Q Consensus 294 ~L~~~lGr~Pt~~ewA~a~g~s~~eL~~~l 323 (428)
...+..|.+|+..|.|++.|++...+++.+
T Consensus 16 ~i~~~~g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 16 RQNMDDGAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp HHHHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHhhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 344445889999999999999876655443
No 17
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=42.29 E-value=1.5e+02 Score=24.60 Aligned_cols=74 Identities=18% Similarity=0.018 Sum_probs=49.6
Q ss_pred HHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHH
Q 014241 295 LQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKS 368 (428)
Q Consensus 295 L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikA 368 (428)
+-.+.| ...|..+.|+++|++...+-+-...-++....++..+..-+..........+.+..+.+. ....++..
T Consensus 26 l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (212)
T 3knw_A 26 LVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKD 101 (212)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 334456 568999999999999999988887766777777776666555555444333556555555 54444444
No 18
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.85 E-value=40 Score=26.57 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhc
Q 014241 290 KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325 (428)
Q Consensus 290 ~~~~~L~~~lGr~Pt~~ewA~a~g~s~~eL~~~l~~ 325 (428)
++..-+...++.+++.+++|+.+|++...|.+..+.
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344445666777899999999999999988877774
No 19
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=40.70 E-value=1.5e+02 Score=24.44 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=36.7
Q ss_pred hhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH
Q 014241 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (428)
Q Consensus 297 ~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ 360 (428)
.+.| ...|..+.|+++|++...+-.-...-++....++.....-+..........+.+..+.+.
T Consensus 39 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (212)
T 3nxc_A 39 SSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLR 103 (212)
T ss_dssp C------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred hcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 3446 568999999999999888876666555555556555554444443333233334444444
No 20
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=40.16 E-value=1.5e+02 Score=24.15 Aligned_cols=74 Identities=11% Similarity=-0.074 Sum_probs=47.8
Q ss_pred HHHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHH
Q 014241 294 KLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMK 367 (428)
Q Consensus 294 ~L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLik 367 (428)
++-.+.| ...|..+.|+++|++...+-.-...-++....++.....-+..........+.+..+-+. ....++.
T Consensus 18 ~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 93 (199)
T 3qbm_A 18 ALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRS 93 (199)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHG
T ss_pred HHHHHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 3444557 457999999999999998887777666666777766665555544444334445555555 4443333
No 21
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=38.94 E-value=1.4e+02 Score=23.36 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=28.5
Q ss_pred HHHHHHHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhc
Q 014241 290 KEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHS 325 (428)
Q Consensus 290 ~~~~~L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~ 325 (428)
++..-+.+.++ .+++.+++|+.+|++...|.+..+.
T Consensus 7 ~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 7 EACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444556677 7889999999999999999887775
No 22
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=38.65 E-value=36 Score=26.05 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=34.6
Q ss_pred hhCCCCcH------HHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCC-hhH
Q 014241 298 QFGREPTL------IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS-LHD 357 (428)
Q Consensus 298 ~lGr~Pt~------~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld-~eD 357 (428)
.+|+.|+. .+|....|++.+.+..+++..- . -=..+.++|.+|++.+...|+. .+|
T Consensus 13 ~~gr~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~---~-~~~~s~~Yi~~Il~~W~~~gi~T~e~ 75 (78)
T 2zc2_A 13 ELGRMLSPFELEDLQKTVSDDKTDPDLVRSALREAV---F-NGKTNWNYIQAILRNWRHEGISTLRQ 75 (78)
T ss_dssp HHTSCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH---H-HTCCCHHHHHHHHHHHHHTTCCSHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH---H-cCCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 44555544 2466666677666655554321 0 1134789999999999988873 555
No 23
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=37.56 E-value=1.3e+02 Score=23.72 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhc
Q 014241 290 KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325 (428)
Q Consensus 290 ~~~~~L~~~lGr~Pt~~ewA~a~g~s~~eL~~~l~~ 325 (428)
++..-+...+..+++..++|+.+|++...|.+..+.
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 334445666778899999999999999998887775
No 24
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=36.21 E-value=1.1e+02 Score=25.23 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=45.9
Q ss_pred CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHh
Q 014241 302 EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEK 371 (428)
Q Consensus 302 ~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVek 371 (428)
..|..+.|+++|++...+-+-...-++....++.....-+..........+.+..+.+. -...++..+..
T Consensus 31 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 101 (204)
T 3eup_A 31 GTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYNDADGS 101 (204)
T ss_dssp HCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTCHHHHHHGGGGT
T ss_pred cCCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 46899999999999988877777666666666666665555444444344556666666 55555544433
No 25
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=33.97 E-value=60 Score=25.57 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=27.9
Q ss_pred HHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhcc
Q 014241 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326 (428)
Q Consensus 291 ~~~~L~~~lGr~Pt~~ewA~a~g~s~~eL~~~l~~G 326 (428)
+..-+...++.+++..++|+.+|++...|.+..+..
T Consensus 10 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 10 VLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 333455566778999999999999999998877643
No 26
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=32.83 E-value=2e+02 Score=23.29 Aligned_cols=63 Identities=22% Similarity=0.133 Sum_probs=40.0
Q ss_pred hhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH
Q 014241 298 QFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (428)
Q Consensus 298 ~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ 360 (428)
+.| ...|..+.|+++|++...+-.-...-++....++.....-+..........+.+..+.+.
T Consensus 23 ~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (195)
T 3pas_A 23 DHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLR 86 (195)
T ss_dssp HHHHHHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HcChHhcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 345 347999999999999988887777766666666666555444433333334445444333
No 27
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=32.67 E-value=2e+02 Score=23.43 Aligned_cols=67 Identities=18% Similarity=0.054 Sum_probs=42.2
Q ss_pred HHHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH
Q 014241 294 KLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (428)
Q Consensus 294 ~L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ 360 (428)
++-.+.| ...|..+.|+++|++...+-+-...-++....++.....-+..........+.+..|-+.
T Consensus 25 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (203)
T 3f1b_A 25 DVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPREQLR 92 (203)
T ss_dssp HHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHHHHH
T ss_pred HHHHHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3444457 468999999999999888877776655666666665555444444333334444444433
No 28
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=32.59 E-value=2e+02 Score=23.26 Aligned_cols=66 Identities=14% Similarity=0.058 Sum_probs=45.6
Q ss_pred HHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH
Q 014241 295 LQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (428)
Q Consensus 295 L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ 360 (428)
+-.+.| ...|..+.|+++|++...+-.-...-++....++.....-+..........+.+..+-+.
T Consensus 21 l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (195)
T 3ppb_A 21 LFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAE 87 (195)
T ss_dssp HHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHH
T ss_pred HHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHH
Confidence 334457 567999999999999999888777666677777776666665555444444455555444
No 29
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=31.79 E-value=2e+02 Score=25.68 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=46.3
Q ss_pred cCCHHHHHHHhhccHHHHHHHH--HHhHHHHHHHHHHcccCCC-------ChhHHHH--HHHHHHHHH
Q 014241 313 GLSCRDLKSELHSGNSSREKLI--NANLRLVVHVAKQYQGRGI-------SLHDLLQ--GSMGLMKSV 369 (428)
Q Consensus 313 g~s~~eL~~~l~~G~~Are~LI--~~nLrLV~sIAkrY~~rGl-------d~eDLIQ--G~IGLikAV 369 (428)
.++++++++.+...+.-+.+.. ..|.++|--.-+++-||.. ..-+++. |.-|++.++
T Consensus 60 ~ItVReFIR~LakS~~Yr~~f~~~~~n~R~IEl~~khlLGR~p~~~~E~~~~~~i~a~~G~~a~IDsl 127 (147)
T 3osj_A 60 DISMKEFVRRLAKSPLYRKQFFEPFINSRALELAFRHILGRGPSSREEVQKYFSIVSSGGLPALVDAL 127 (147)
T ss_dssp SSCHHHHHHHHHHSHHHHHHHTTTSCHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHcCHHHHHHhccCCCchHHHHHHhhhhcCCCCCCHHHHHHHHHHHHccCcHhHHHHH
Confidence 3688999999998888888888 5578899999999999864 2456777 999998885
No 30
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=31.58 E-value=1.8e+02 Score=22.46 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=26.7
Q ss_pred HHHHHhhhCC-CCcHHHHHHHhcCCHHHHHHHhhc
Q 014241 292 KSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHS 325 (428)
Q Consensus 292 ~~~L~~~lGr-~Pt~~ewA~a~g~s~~eL~~~l~~ 325 (428)
..-+++.+.. +++..++|+..|++...|.+..+.
T Consensus 8 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 8 QNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3334555666 789999999999999999887775
No 31
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=30.88 E-value=2.3e+02 Score=23.44 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=46.0
Q ss_pred HHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHH
Q 014241 295 LQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSV 369 (428)
Q Consensus 295 L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAV 369 (428)
+-.+.| ...|..+.|+++|++...+-.-...-++....++.....-+..........+.+..+-+. ....++..+
T Consensus 43 l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 119 (218)
T 3dcf_A 43 LFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTI 119 (218)
T ss_dssp HHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 334457 458999999999999998887777656666666666555544444443344444444333 444444433
No 32
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=30.69 E-value=2.2e+02 Score=23.13 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=53.5
Q ss_pred HHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHc-ccCCCChhHHHH-HHHHHHHHHHh
Q 014241 295 LQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQY-QGRGISLHDLLQ-GSMGLMKSVEK 371 (428)
Q Consensus 295 L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY-~~rGld~eDLIQ-G~IGLikAVek 371 (428)
+-.+.| ...|..+.|+++|++...+-+-...-++....++..+..-+....... ...+.+..+-+. -...++..+..
T Consensus 22 lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 101 (197)
T 3rd3_A 22 IMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACP 101 (197)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHCCT
T ss_pred HHHHCCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Confidence 334457 457999999999999988877777655666666666555554444443 334566666666 66666655554
Q ss_pred cCCCCCC
Q 014241 372 FKPQAGC 378 (428)
Q Consensus 372 FDpskG~ 378 (428)
.+...++
T Consensus 102 ~~~~~~~ 108 (197)
T 3rd3_A 102 PCDEQRC 108 (197)
T ss_dssp TSSCCCC
T ss_pred Ccccccc
Confidence 4444333
No 33
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=30.21 E-value=2.2e+02 Score=22.99 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=44.4
Q ss_pred HHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhc-cHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHH
Q 014241 295 LQSQFG-REPTLIEWAKAIGLSCRDLKSELHS-GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKS 368 (428)
Q Consensus 295 L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~-G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikA 368 (428)
+-.+.| ...|..+.|+++|++...+-.-... -++....++.....-+..........+.+..+-+. ....++..
T Consensus 18 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (191)
T 1sgm_A 18 LSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQ 94 (191)
T ss_dssp HHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHcCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Confidence 334456 4579999999999999888877774 55566666665555444433333233345555444 44444433
No 34
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=29.61 E-value=1.8e+02 Score=23.68 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=28.1
Q ss_pred HHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhc
Q 014241 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325 (428)
Q Consensus 291 ~~~~L~~~lGr~Pt~~ewA~a~g~s~~eL~~~l~~ 325 (428)
+..-+...++.+++.+++|+.+|++...|.+..+.
T Consensus 16 ~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 16 ILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33345566777899999999999999999887775
No 35
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=28.41 E-value=68 Score=25.82 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=27.1
Q ss_pred HHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhc
Q 014241 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325 (428)
Q Consensus 291 ~~~~L~~~lGr~Pt~~ewA~a~g~s~~eL~~~l~~ 325 (428)
+..-+...+..+++..++|+.+|++...|.+..+.
T Consensus 12 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 12 VCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33345556677889999999999999888777654
No 36
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=28.38 E-value=2.9e+02 Score=23.85 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=24.4
Q ss_pred HHHHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhc
Q 014241 293 SKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHS 325 (428)
Q Consensus 293 ~~L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~ 325 (428)
.++-.+.| ...|..+.|+++|++...+-.-...
T Consensus 17 ~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~F~~ 50 (213)
T 3ni7_A 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213)
T ss_dssp HHHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHcCccccCHHHHHHHhCCCHHHHHHHCCC
Confidence 34445567 5679999999999998777666554
No 37
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=27.69 E-value=2.5e+02 Score=22.87 Aligned_cols=73 Identities=7% Similarity=0.059 Sum_probs=48.7
Q ss_pred HHhhhCCC-CcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHH
Q 014241 295 LQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMK 367 (428)
Q Consensus 295 L~~~lGr~-Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLik 367 (428)
+-.+.|-. .|..+.|+++|++...+-.-...-++....++..+..-+..........+.+..|-+. ....++.
T Consensus 29 l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 103 (206)
T 3kz9_A 29 VFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNIDLDLHAKENIANITNAMIE 103 (206)
T ss_dssp HHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHhcCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 44455744 8999999999999999888777766777777777666666555554444555555444 4333333
No 38
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=27.31 E-value=2.5e+02 Score=22.85 Aligned_cols=76 Identities=16% Similarity=0.035 Sum_probs=48.3
Q ss_pred HHhhhCCCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHH
Q 014241 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVE 370 (428)
Q Consensus 295 L~~~lGr~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVe 370 (428)
+-.+.|-..|..+.|+++|++...+-.-...-+.....++..+..-+..........+.+..+.+. -.-.++..+.
T Consensus 21 lf~~~G~~~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (190)
T 3jsj_A 21 LTYRDGVGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGRSPRERILYVFERVESQAG 97 (190)
T ss_dssp HHHHHCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Confidence 334457448999999999999999988777656666666666655554444333334445555555 4444444433
No 39
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=26.77 E-value=3.2e+02 Score=23.78 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=25.2
Q ss_pred HHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHH
Q 014241 295 LQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINA 336 (428)
Q Consensus 295 L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~ 336 (428)
|-.+.| ...|..+.|+++|++...|-.-...-++....++..
T Consensus 58 lf~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~v~~~ 100 (245)
T 3aqt_A 58 LMAERGVDNVGIAEITEGANIGTGTFYNYFPDREQLLQAVAED 100 (245)
T ss_dssp HHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHHHH
T ss_pred HHHhcCcccCcHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHH
Confidence 333446 457999999999998655544444333333333333
No 40
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=26.62 E-value=1e+02 Score=27.20 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=20.3
Q ss_pred hhCCCCcHHHHHHHhcCCHHHHHHHh
Q 014241 298 QFGREPTLIEWAKAIGLSCRDLKSEL 323 (428)
Q Consensus 298 ~lGr~Pt~~ewA~a~g~s~~eL~~~l 323 (428)
..|.+||..|.|++.|++...+.+.+
T Consensus 20 ~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp HHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 45899999999999999865554433
No 41
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=24.41 E-value=1.5e+02 Score=26.65 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=46.9
Q ss_pred cCCHHHHHHHhhccHHHHHHHH--HHhHHHHHHHHHHcccCCC-------ChhHHHH--HHHHHHHHH
Q 014241 313 GLSCRDLKSELHSGNSSREKLI--NANLRLVVHVAKQYQGRGI-------SLHDLLQ--GSMGLMKSV 369 (428)
Q Consensus 313 g~s~~eL~~~l~~G~~Are~LI--~~nLrLV~sIAkrY~~rGl-------d~eDLIQ--G~IGLikAV 369 (428)
.++++++++.+...+.-|...+ ..|.++|--.-+++-||.. ..-++++ |.-|++.++
T Consensus 54 ~ItVReFVR~LakSe~Yr~~f~~~~~n~R~IEl~~khlLGR~p~~~~E~~~~~~i~a~~G~~a~IDsl 121 (154)
T 3pru_C 54 SISVREFVRTVAKSELYKKKFLYNNFQTRVIELNYKHLLGRAPFSEDEVIFHLDLYENQGFDADIDSY 121 (154)
T ss_dssp SSCHHHHHHHHHTSHHHHHHHTTTSCHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CcCHHHHHHHHHcCHHHHHHhccCCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCchhhhhHh
Confidence 3688899999999898888888 5578899999999999864 2557777 999999885
No 42
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=23.69 E-value=3e+02 Score=22.45 Aligned_cols=66 Identities=15% Similarity=0.035 Sum_probs=39.3
Q ss_pred HHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH
Q 014241 295 LQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (428)
Q Consensus 295 L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ 360 (428)
+-.+.| ...|..+.|+++|++...+-+-...-++....++.....-+..........+.+..+-+.
T Consensus 28 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (211)
T 3him_A 28 VFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDIAAPDRLM 94 (211)
T ss_dssp HHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 334457 457999999999999777766655544555555555554444444443333444444333
No 43
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=23.56 E-value=17 Score=34.10 Aligned_cols=40 Identities=30% Similarity=0.570 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHHHhc--CCHHHHHHHhhcc
Q 014241 287 RLEKEKSKLQSQFGREPTLIEWAKAIG--LSCRDLKSELHSG 326 (428)
Q Consensus 287 ~Le~~~~~L~~~lGr~Pt~~ewA~a~g--~s~~eL~~~l~~G 326 (428)
++.+...+|...+|+.||.+|.|+..| ++..++...+..+
T Consensus 198 ~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~a 239 (245)
T 3ugo_A 198 KLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIA 239 (245)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 344556667788899999999999999 9988887766543
No 44
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=23.37 E-value=2.7e+02 Score=22.71 Aligned_cols=41 Identities=7% Similarity=-0.045 Sum_probs=29.2
Q ss_pred CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHH
Q 014241 302 EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVV 342 (428)
Q Consensus 302 ~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~ 342 (428)
..|..+.|+++|++...+-.-...-++....++..+..-+.
T Consensus 40 ~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~ 80 (203)
T 3mnl_A 40 AVQMRAVADRADVAVGTLYRYFPSKVHLLVSALGREFSRID 80 (203)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHcCCChhHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 37899999999999888877776655555555555544433
No 45
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=22.90 E-value=1.1e+02 Score=19.91 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=19.0
Q ss_pred CcHHHHHHHhcCCHHHHHHHhhc
Q 014241 303 PTLIEWAKAIGLSCRDLKSELHS 325 (428)
Q Consensus 303 Pt~~ewA~a~g~s~~eL~~~l~~ 325 (428)
-+..+.|+..|++...+.+.++.
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 57889999999998888877764
No 46
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=22.60 E-value=3.1e+02 Score=22.22 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHH
Q 014241 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQ 347 (428)
Q Consensus 301 r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkr 347 (428)
...|..+.|+++|++...+-.-...-++....++.....-+......
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~ 77 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIER 77 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999888777766666666666666555444433
No 47
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=22.31 E-value=3.7e+02 Score=22.99 Aligned_cols=78 Identities=9% Similarity=-0.029 Sum_probs=50.8
Q ss_pred HHHhhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHccc--CCCChhHHHH-HHHHHHHHH
Q 014241 294 KLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG--RGISLHDLLQ-GSMGLMKSV 369 (428)
Q Consensus 294 ~L~~~lGr-~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~--rGld~eDLIQ-G~IGLikAV 369 (428)
++-.+.|- ..|..+.|+++|++...+-.-...-++....++.....-+......... .+.+..|.+. ....++..+
T Consensus 54 ~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (229)
T 3bni_A 54 DLLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQRNLERYAERVTERLTEAGDGGWRGALDTVLDEYLAMK 133 (229)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcChhhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 34444574 4799999999999998888777766666666666665554443333222 3456666666 666666665
Q ss_pred Hh
Q 014241 370 EK 371 (428)
Q Consensus 370 ek 371 (428)
..
T Consensus 134 ~~ 135 (229)
T 3bni_A 134 RT 135 (229)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 48
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=20.76 E-value=3.4e+02 Score=21.97 Aligned_cols=66 Identities=9% Similarity=0.121 Sum_probs=39.0
Q ss_pred HHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH
Q 014241 295 LQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (428)
Q Consensus 295 L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ 360 (428)
+-.+.| ...|..+.|+++|++...+-.-...-++....++.....-+..........+.+..+.+.
T Consensus 23 lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (196)
T 3he0_A 23 LIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGVNDDMPLKERYR 89 (196)
T ss_dssp HHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTTTCCTTSCHHHHHH
T ss_pred HHHHhCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 334457 458999999999999888876666544555555555544443333333233334444333
No 49
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=20.46 E-value=3.3e+02 Score=21.80 Aligned_cols=79 Identities=9% Similarity=-0.010 Sum_probs=50.1
Q ss_pred HHHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH-HHHHHHHHHHh
Q 014241 294 KLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ-GSMGLMKSVEK 371 (428)
Q Consensus 294 ~L~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~sIAkrY~~rGld~eDLIQ-G~IGLikAVek 371 (428)
++-.+.| ...|..+.|+++|++...+-.-...-++....++..+..-+..........+.+..+.+. -...++..+..
T Consensus 19 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 98 (194)
T 2g7s_A 19 TLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIAD 98 (194)
T ss_dssp HHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcc
Confidence 3444456 457999999999999999887777766666666666555444433333333445555555 55555555554
Q ss_pred c
Q 014241 372 F 372 (428)
Q Consensus 372 F 372 (428)
.
T Consensus 99 ~ 99 (194)
T 2g7s_A 99 A 99 (194)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=20.12 E-value=94 Score=29.30 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=23.3
Q ss_pred hCCCCcHHHHHHHhcCCHHHHHHHhh
Q 014241 299 FGREPTLIEWAKAIGLSCRDLKSELH 324 (428)
Q Consensus 299 lGr~Pt~~ewA~a~g~s~~eL~~~l~ 324 (428)
.|++|+..+.|+++|++.+++++.++
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~ 58 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLE 58 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 69999999999999999988877665
No 51
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=20.01 E-value=3.7e+02 Score=22.08 Aligned_cols=47 Identities=19% Similarity=0.041 Sum_probs=33.5
Q ss_pred HhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHH
Q 014241 296 QSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVV 342 (428)
Q Consensus 296 ~~~lG-r~Pt~~ewA~a~g~s~~eL~~~l~~G~~Are~LI~~nLrLV~ 342 (428)
-.+.| ...|..+.|+++|++...+-.-...-++....++..+..-+.
T Consensus 39 ~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 86 (217)
T 3mvp_A 39 FSDKTYFNVTTNEIAKKADVSVGTLYAYFASKEDILTALLKRYNDFFL 86 (217)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHcCccccCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34456 468999999999999988887776655666666655544444
Done!