Query 014242
Match_columns 428
No_of_seqs 359 out of 3291
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1782 Predicted metal-depend 100.0 3.2E-48 7E-53 386.4 23.3 310 111-427 201-591 (637)
2 TIGR03675 arCOG00543 arCOG0054 100.0 9.8E-44 2.1E-48 379.6 30.3 310 111-427 195-584 (630)
3 KOG1361 Predicted hydrolase in 100.0 5.4E-42 1.2E-46 347.0 23.1 312 117-428 86-399 (481)
4 COG1236 YSH1 Predicted exonucl 100.0 1.5E-38 3.2E-43 327.1 26.7 304 111-427 21-382 (427)
5 KOG1136 Predicted cleavage and 100.0 2.5E-37 5.4E-42 295.2 22.5 322 99-428 8-403 (501)
6 KOG1137 mRNA cleavage and poly 100.0 2.4E-37 5.2E-42 310.9 18.9 326 94-427 13-409 (668)
7 TIGR00649 MG423 conserved hypo 100.0 2.4E-29 5.1E-34 259.8 27.5 308 111-427 21-372 (422)
8 COG0595 mRNA degradation ribon 99.9 2.1E-24 4.5E-29 225.9 26.5 303 111-427 29-382 (555)
9 PRK11709 putative L-ascorbate 99.9 1.9E-23 4.2E-28 209.8 16.1 197 58-261 18-251 (355)
10 KOG1135 mRNA cleavage and poly 99.8 4.9E-19 1.1E-23 183.2 24.8 277 111-397 22-367 (764)
11 TIGR02651 RNase_Z ribonuclease 99.7 1.8E-18 3.8E-23 170.5 8.4 165 89-265 3-234 (299)
12 TIGR02649 true_RNase_BN ribonu 99.7 6.1E-18 1.3E-22 167.5 11.3 163 90-264 3-235 (303)
13 PRK11244 phnP carbon-phosphoru 99.7 1.7E-17 3.6E-22 159.8 13.8 142 111-265 44-191 (250)
14 TIGR03307 PhnP phosphonate met 99.7 9E-17 2E-21 153.6 15.4 142 111-265 34-181 (238)
15 PRK05184 pyrroloquinoline quin 99.7 2.3E-16 5E-21 156.1 12.5 146 114-262 50-222 (302)
16 TIGR02108 PQQ_syn_pqqB coenzym 99.7 4.8E-16 1E-20 153.6 12.3 206 112-326 47-300 (302)
17 PF12706 Lactamase_B_2: Beta-l 99.7 2.4E-16 5.3E-21 144.6 9.0 139 115-264 2-159 (194)
18 PRK02126 ribonuclease Z; Provi 99.6 1E-14 2.2E-19 146.1 15.5 142 112-265 26-280 (334)
19 PRK02113 putative hydrolase; P 99.6 6.7E-15 1.4E-19 141.7 12.5 138 111-264 42-195 (252)
20 COG1234 ElaC Metal-dependent h 99.6 3.9E-15 8.5E-20 146.5 9.6 221 88-322 4-283 (292)
21 PF07522 DRMBL: DNA repair met 99.6 7.3E-15 1.6E-19 124.0 9.4 94 335-428 1-96 (110)
22 PRK00055 ribonuclease Z; Revie 99.6 3.5E-15 7.7E-20 144.3 7.6 163 88-265 4-200 (270)
23 PRK00685 metal-dependent hydro 99.6 1.4E-13 3E-18 130.3 18.2 137 111-260 15-165 (228)
24 KOG1138 Predicted cleavage and 99.5 9.7E-13 2.1E-17 132.6 19.4 269 141-426 94-462 (653)
25 PRK04286 hypothetical protein; 99.5 1.2E-13 2.7E-18 136.4 12.8 221 97-323 3-277 (298)
26 TIGR02650 RNase_Z_T_toga ribon 99.5 4.6E-13 1E-17 129.3 13.3 179 111-308 16-252 (277)
27 COG2333 ComEC Predicted hydrol 99.4 3.1E-12 6.7E-17 125.1 12.8 190 111-322 61-266 (293)
28 smart00849 Lactamase_B Metallo 99.3 5.2E-12 1.1E-16 113.9 7.6 124 111-241 13-148 (183)
29 PRK11921 metallo-beta-lactamas 99.3 7.1E-12 1.5E-16 128.6 8.8 150 77-236 6-163 (394)
30 KOG2121 Predicted metal-depend 99.3 5.5E-13 1.2E-17 140.3 -0.4 173 88-265 445-653 (746)
31 TIGR00361 ComEC_Rec2 DNA inter 99.2 3.1E-11 6.6E-16 131.7 11.0 184 111-322 457-658 (662)
32 PRK05452 anaerobic nitric oxid 99.2 2.2E-11 4.8E-16 127.7 8.7 152 77-236 8-167 (479)
33 COG2220 Predicted Zn-dependent 99.1 1E-09 2.2E-14 106.2 13.7 165 72-262 3-183 (258)
34 PRK11539 ComEC family competen 99.1 2.3E-10 5E-15 126.5 9.7 180 111-322 518-716 (755)
35 TIGR03413 GSH_gloB hydroxyacyl 99.1 1.6E-10 3.4E-15 111.4 6.9 108 113-239 20-130 (248)
36 COG1235 PhnP Metal-dependent h 99.1 7E-10 1.5E-14 108.1 9.9 199 96-305 5-240 (269)
37 PLN02469 hydroxyacylglutathion 99.0 1.2E-09 2.5E-14 106.0 7.4 111 113-239 23-139 (258)
38 PF13483 Lactamase_B_3: Beta-l 99.0 4.8E-09 1E-13 94.3 10.7 96 142-261 35-137 (163)
39 PLN02398 hydroxyacylglutathion 98.9 3.3E-09 7.1E-14 105.8 9.2 88 142-239 120-210 (329)
40 PRK10241 hydroxyacylglutathion 98.9 2.2E-09 4.8E-14 103.6 5.8 107 112-239 21-131 (251)
41 COG0491 GloB Zn-dependent hydr 98.9 2.8E-09 6.1E-14 100.5 6.1 123 113-241 35-173 (252)
42 PF10996 Beta-Casp: Beta-Casp 98.8 1.8E-08 3.9E-13 86.6 8.4 48 346-395 79-126 (126)
43 PF02112 PDEase_II: cAMP phosp 98.8 1.1E-07 2.3E-12 95.0 13.7 144 142-285 78-280 (335)
44 COG0426 FpaA Uncharacterized f 98.8 4.6E-07 9.9E-12 91.4 17.9 125 103-237 33-167 (388)
45 PLN02962 hydroxyacylglutathion 98.7 1.5E-08 3.2E-13 97.8 6.8 113 113-240 36-155 (251)
46 PF00753 Lactamase_B: Metallo- 98.7 5.3E-09 1.2E-13 93.9 2.4 128 111-242 13-152 (194)
47 KOG0813 Glyoxylase [General fu 98.6 1.3E-07 2.7E-12 90.8 7.2 89 142-239 50-143 (265)
48 COG5212 PDE1 Low-affinity cAMP 98.2 8.3E-06 1.8E-10 77.7 10.5 140 142-281 111-292 (356)
49 COG2248 Predicted hydrolase (m 98.0 9.4E-05 2E-09 70.0 12.5 205 111-323 22-276 (304)
50 COG1237 Metal-dependent hydrol 97.9 3.7E-05 8.1E-10 73.3 7.1 60 112-177 30-96 (259)
51 KOG0814 Glyoxylase [General fu 97.4 0.00033 7.2E-09 62.9 6.6 86 143-238 57-143 (237)
52 KOG3798 Predicted Zn-dependent 97.1 0.0035 7.5E-08 59.6 9.8 156 140-305 129-307 (343)
53 PF07521 RMMBL: RNA-metabolisi 96.1 0.0039 8.5E-08 43.3 2.1 25 403-427 4-28 (43)
54 PF14597 Lactamase_B_5: Metall 95.9 0.0024 5.2E-08 58.0 0.6 85 141-238 53-139 (199)
55 COG2015 Alkyl sulfatase and re 95.3 0.066 1.4E-06 55.4 8.0 37 140-176 161-204 (655)
56 KOG4736 Uncharacterized conser 78.7 4.2 9.1E-05 39.9 5.5 92 141-241 123-216 (302)
57 PF13691 Lactamase_B_4: tRNase 59.5 4.4 9.6E-05 30.5 0.9 43 111-159 19-63 (63)
58 PF06057 VirJ: Bacterial virul 51.3 21 0.00045 33.1 4.0 75 228-305 4-80 (192)
59 PRK12270 kgd alpha-ketoglutara 48.3 37 0.00081 39.0 6.1 101 251-362 970-1082(1228)
60 PRK06683 hypothetical protein; 43.7 1.4E+02 0.003 23.6 7.2 52 285-336 21-73 (82)
61 PF00205 TPP_enzyme_M: Thiamin 29.6 1E+02 0.0022 26.2 4.8 41 286-326 7-49 (137)
62 PRK13601 putative L7Ae-like ri 29.5 2.7E+02 0.0059 22.0 6.8 49 286-334 19-68 (82)
63 KOG3592 Microtubule-associated 29.2 24 0.00051 38.9 0.8 64 91-161 33-99 (934)
64 PRK13602 putative ribosomal pr 28.7 2.9E+02 0.0063 21.7 7.2 51 285-335 21-72 (82)
65 COG2870 RfaE ADP-heptose synth 28.0 1.3E+02 0.0028 31.3 5.7 51 274-326 128-181 (467)
66 KOG1137 mRNA cleavage and poly 26.2 1.7E+02 0.0037 31.6 6.4 71 112-182 171-255 (668)
67 PF13380 CoA_binding_2: CoA bi 25.7 2E+02 0.0043 24.0 5.8 55 251-322 54-108 (116)
68 TIGR00537 hemK_rel_arch HemK-r 24.7 2.8E+02 0.0061 24.6 7.0 47 274-322 117-163 (179)
69 PRK05583 ribosomal protein L7A 23.0 4.3E+02 0.0093 21.8 7.1 53 283-335 25-78 (104)
70 PRK04175 rpl7ae 50S ribosomal 22.5 4.2E+02 0.0092 22.5 7.2 49 287-335 42-92 (122)
71 PTZ00106 60S ribosomal protein 22.0 4.1E+02 0.0088 22.1 6.8 51 285-335 35-87 (108)
72 PF01248 Ribosomal_L7Ae: Ribos 21.9 4E+02 0.0086 20.9 7.0 52 284-335 24-77 (95)
73 PRK07714 hypothetical protein; 21.8 4.4E+02 0.0094 21.4 7.0 52 283-334 26-78 (100)
74 TIGR00315 cdhB CO dehydrogenas 21.1 2.3E+02 0.005 25.5 5.5 35 291-325 28-64 (162)
75 PTZ00222 60S ribosomal protein 21.0 7.8E+02 0.017 24.0 9.6 80 285-374 142-223 (263)
76 COG3946 VirJ Type IV secretory 20.6 1.7E+02 0.0036 30.5 4.9 75 228-304 262-337 (456)
No 1
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=3.2e-48 Score=386.36 Aligned_cols=310 Identities=23% Similarity=0.354 Sum_probs=252.1
Q ss_pred cCCceEEEcCCCCCCCCCcc----eEecCCCcCCCCCccEEEeCCCchhhhCCcccc---cCCCcEEeCHHHHHHHHHhh
Q 014242 111 HLKKIVDRSCPFYKKIPGTP----FTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCL 183 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~~~----~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~ 183 (428)
++..++|+|||......+.. +.++.|. ...+|||+|||+|.||+|-||.+ ++.+||||+++|..++-.+.
T Consensus 201 T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~---~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~PTRDlm~LLq 277 (637)
T COG1782 201 TPESRVLLDCGVNVAGNGEDAFPYLDVPEFQ---PDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTPPTRDLMVLLQ 277 (637)
T ss_pred cCCceEEEeccccCCCCccccCccccccccc---ccccceEEEeecccccccchhhhhhcCCCCCeeeCCCcHHHHHHHH
Confidence 79999999999976543211 2223332 23699999999999999999964 47889999999998765432
Q ss_pred c----c-------C----------CCceEEcCCCcEEEE-CCEEEEEEEcccCCCceEEEEEeeCCc-EEEEeCCCCCCc
Q 014242 184 L----V-------N----------PSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHFRLQDGQ-CYLHTGDFRASR 240 (428)
Q Consensus 184 ~----~-------~----------~~~i~~v~~~~~~~i-~~~~V~~~~a~H~~Gs~~~~~~~~~g~-~ilytGD~~~~~ 240 (428)
. + + -....++.+|+...| .++++|+..|||++||++..+...+|. +|+||||+.+.+
T Consensus 278 ~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGdGlyNi~yTGDfk~~~ 357 (637)
T COG1782 278 LDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGLYNIVYTGDFKFEK 357 (637)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEecCCceeEEEecccccce
Confidence 1 0 0 134678999999988 699999999999999999999886664 899999999998
Q ss_pred cccccccc-cCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccHHHHHHHHHHHc----
Q 014242 241 LMQSYPLL-VNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKAL---- 315 (428)
Q Consensus 241 ~~~~~~~l-~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGreqell~i~~~~---- 315 (428)
..+..+.. ...+++.||+|+||+.+....|+++++.+++++.|.+++++||+ ||||+|+.||.||++-+++++
T Consensus 358 trLl~~A~n~FpRvEtlimEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~rGGK--vLIP~fAVGR~QEvM~VLee~mr~g 435 (637)
T COG1782 358 TRLLEPANNKFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKRGGK--VLIPVFAVGRSQEVMIVLEEAMRKG 435 (637)
T ss_pred eeecChhhccCcchhheeeeeccCCccccCccHHHHHHHHHHHHHHHHhcCCe--EEEEeeeccccceehhHHHHHHhcC
Confidence 87665532 36899999999999987777899999999999999999999998 999999999999999988764
Q ss_pred ---CCeEEEechHHHHHHh---c----------------CCCcccCCcee-----------cCCCceEEEeecCCCChhh
Q 014242 316 ---GVKIYANASRRRVLQS---F----------------DWPELSGNLCT-----------QGNDTLLHVLPMSSLKFET 362 (428)
Q Consensus 316 ---~~~I~v~~~~~~i~~~---~----------------~~~~~~~~~~~-----------d~~~~~I~v~~~~~l~~g~ 362 (428)
.+|||+|+|..+.... | .+||+.+.|.. +..+|+|+++++|||.+|+
T Consensus 436 ~ipe~PVYlDGMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~~r~~i~~~~ep~iIlaTSGMlnGGP 515 (637)
T COG1782 436 LIPEVPVYLDGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSDERQEIIESDEPAIILATSGMLNGGP 515 (637)
T ss_pred CCCCCceeeeeeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChhHHHHHhcCCCCeEEEeccccccCCc
Confidence 4799999986433221 1 35676665542 2569999999999999999
Q ss_pred HHHHHhhhcCCCCcEEEEeeccccccCCCCCccccc----C-CCcCC-------CEEEEEE-ccccCCCHHHHHHHHh
Q 014242 363 LKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLI----R-PLSRG-------NITIYGV-PYSEHSSFTELREFVQ 427 (428)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~~ptG~~~~~t~g~~l~~~----~-~~~~~-------~~~i~~i-~~S~Hs~~~eL~~fv~ 427 (428)
+.+|++.++++++|+++| +|||+++|+||++..- . +...| ++.+..+ .||+|||+.||++||+
T Consensus 516 vveyfk~lA~DprntliF--VgYQAeGTLGRriq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHsdrrqL~~yvr 591 (637)
T COG1782 516 VVEYFKHLAPDPKNTLIF--VGYQAEGTLGRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQLMKYVR 591 (637)
T ss_pred HHHHHHHhCCCCCceEEE--EEeccCcchhhhhhcCceecccccCCCCeEEEEEEEEEEEecCcCCCccHHHHHHHHH
Confidence 999999999999999999 9999999999998641 1 11112 5677888 7999999999999996
No 2
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=9.8e-44 Score=379.60 Aligned_cols=310 Identities=23% Similarity=0.359 Sum_probs=242.3
Q ss_pred cCCceEEEcCCCCCCCCC---cc-eEecCCCcCCCCCccEEEeCCCchhhhCCcccc---cCCCcEEeCHHHHHHHHHhh
Q 014242 111 HLKKIVDRSCPFYKKIPG---TP-FTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCL 183 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~---~~-~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~ 183 (428)
.++..+|+|||....... .+ +....+ ...+||+|||||+|.||+|+||.+ .+.++||++.+|.+++...+
T Consensus 195 ~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~---~~~~IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~T~pT~~l~~~ll 271 (630)
T TIGR03675 195 TPESRILLDCGVNVGANGDNAYPYLDVPEF---QLDELDAVVITHAHLDHSGLVPLLFKYGYDGPVYCTPPTRDLMTLLQ 271 (630)
T ss_pred ECCCEEEEECCCCccccchhhcccccccCC---CHHHCcEEEECCCCHHHHhhHHHHHHhCCCCceeecHHHHHHHHHHH
Confidence 577889999998653211 11 111111 246899999999999999999964 35789999999988765432
Q ss_pred c----------cC-----------CCceEEcCCCcEEEE-CCEEEEEEEcccCCCceEEEEEeeCC-cEEEEeCCCCCCc
Q 014242 184 L----------VN-----------PSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHFRLQDG-QCYLHTGDFRASR 240 (428)
Q Consensus 184 ~----------~~-----------~~~i~~v~~~~~~~i-~~~~V~~~~a~H~~Gs~~~~~~~~~g-~~ilytGD~~~~~ 240 (428)
. .. ...+.++++++++.+ ++++|+++++||++||+++.++..+| ++|+||||++...
T Consensus 272 ~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i~dg~~~IvYTGD~~~~~ 351 (630)
T TIGR03675 272 LDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDGLYNIVYTGDFKYEK 351 (630)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEECCCCEEEEEeCCCCCCC
Confidence 1 00 024678899999999 68999999999999999998887544 5899999999977
Q ss_pred ccccccc-ccCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccHHHHHHHHHHHc----
Q 014242 241 LMQSYPL-LVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKAL---- 315 (428)
Q Consensus 241 ~~~~~~~-l~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGreqell~i~~~~---- 315 (428)
.....+. ....++|+||+|+||+++...+|++++..+++.+.|+++++++++ |+||+|++||.||++.+++++
T Consensus 352 ~~ll~~a~~~~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~--VLIP~favGR~QEll~~L~~~~~~g 429 (630)
T TIGR03675 352 TRLLDPAVNKFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGK--VLIPVFAVGRAQEVMLVLEEAMRKG 429 (630)
T ss_pred CcCccchhhcCCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCE--EEEEechhHHHHHHHHHHHHHHHhC
Confidence 6543332 124689999999999998766799999999999999999998876 999999999999999887653
Q ss_pred ---CCeEEEechHHHHHH---hc----------------CCCcccCCcee-----------cCCCceEEEeecCCCChhh
Q 014242 316 ---GVKIYANASRRRVLQ---SF----------------DWPELSGNLCT-----------QGNDTLLHVLPMSSLKFET 362 (428)
Q Consensus 316 ---~~~I~v~~~~~~i~~---~~----------------~~~~~~~~~~~-----------d~~~~~I~v~~~~~l~~g~ 362 (428)
.+|||++++..++.+ .+ ..|+..+.+.. +..+|+|+++++|||++|+
T Consensus 430 ~lp~~pIy~dg~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~~~v~~~~~~~~i~~~~~p~VIiatsGMl~gG~ 509 (630)
T TIGR03675 430 LIPEVPVYLDGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFVRVEGSDERREIIESDEPAIILATSGMLNGGP 509 (630)
T ss_pred CCCCCcEEEEchHHHHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCceEEeCCHHHHHHHhcCCCCEEEEECCCCCCcch
Confidence 479999997654432 21 12333333321 2468999999999999999
Q ss_pred HHHHHhhhcCCCCcEEEEeeccccccCCCCCccccc-CC----------CcCCCEEEEEEc-cccCCCHHHHHHHHh
Q 014242 363 LKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLI-RP----------LSRGNITIYGVP-YSEHSSFTELREFVQ 427 (428)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~~ptG~~~~~t~g~~l~~~-~~----------~~~~~~~i~~i~-~S~Hs~~~eL~~fv~ 427 (428)
+.+|++.++++++|+|+| +|||+++|+||+|+.- +. ....+++|+.+. ||+|||++||++||+
T Consensus 510 ~~~~l~~l~~d~kn~Iif--vGyqa~gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~gfSaHaD~~~L~~~v~ 584 (630)
T TIGR03675 510 VVEYLKLLAPDPRNSLVF--VGYQAEGTLGRRIQSGWREIPLTDEGKTETIKINMEVETVEGFSGHSDRRQLMNYVR 584 (630)
T ss_pred HHHHHHHHcCCCCCeEEE--eCCCCCCchHHHHhcCCcEEEecCCCCceEEEEEEEEEEeCCccccCCHHHHHHHHH
Confidence 999999999999999999 9999999999988652 11 122367899996 999999999999986
No 3
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=100.00 E-value=5.4e-42 Score=346.97 Aligned_cols=312 Identities=48% Similarity=0.840 Sum_probs=276.8
Q ss_pred EEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCcccccCCCcEEeCHHHHHHHHHhhccCCCceEEcCCC
Q 014242 117 DRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELN 196 (428)
Q Consensus 117 liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~ 196 (428)
.+.|.+.+..|+..|.+|.|+...+..+.+.|+||+|.||..||...|.++++||+..|+.++...+.+....++.++.+
T Consensus 86 ~~p~~~~~~~p~~~f~VD~f~~~~~~~~s~yFLsHFHSDHy~GL~~sW~~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~ 165 (481)
T KOG1361|consen 86 RIPLHVIKVLPGGEFSVDAFRYGHIEGCSAYFLSHFHSDHYIGLTKSWSHPPLYCSPITARLVPLKVSVTKQSIQALDLN 165 (481)
T ss_pred CCCCcceeecCCCcEEEehhhcCCccccceeeeecccccccccccccccCCcccccccchhhhhhhcccChhhceeecCC
Confidence 46677778888889999999998888999999999999999999999999999999999999999888888899999999
Q ss_pred cEEEECCEEEEEEEcccCCCceEEEEEeeCCcEEEEeCCCCCCcccccccccc-CCCccEEEEecCCCCCCCCCCChHHH
Q 014242 197 TEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLV-NHRVNVLYLDTTYCNPKYKFPSKEDV 275 (428)
Q Consensus 197 ~~~~i~~~~V~~~~a~H~~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~-~~~~D~Li~E~Ty~~~~~~~ps~~~~ 275 (428)
+++.+.++.|++++++||||+++|+|+...|..+|||||||+...+...|.+. ...+|.+++|+||+++.+.||+++++
T Consensus 166 ~~~~i~~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~es 245 (481)
T KOG1361|consen 166 QPLEIPGIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEES 245 (481)
T ss_pred CceeecceEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHhcCCccceEEEeecccCCCCCCccHHHH
Confidence 99999999999999999999999999998888999999999999987666443 38899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccccccHHHHHHHHHHHcCCeEEEechHHHHHHhcCCCcccCCceecCCCceEEEeec
Q 014242 276 LNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPM 355 (428)
Q Consensus 276 ~~~l~~~i~~~l~~g~~~lvli~~~slGreqell~i~~~~~~~I~v~~~~~~i~~~~~~~~~~~~~~~d~~~~~I~v~~~ 355 (428)
.+.+++.+......+++.+++|++|++|+|..++++++.++.||++.++++.+++.+|+.+....++.|..+..||++++
T Consensus 246 vq~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~eia~~l~~kI~v~~~~~~~~~~lg~~d~~~~~s~d~~~ssvhv~~~ 325 (481)
T KOG1361|consen 246 VQEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLLEIARILNSKIWVEPRRLRLLQCLGFDDESKLLSIDVDESSVHVVPM 325 (481)
T ss_pred HHHHHHHHHhhhhhCCceEEEEEEEecchhHHHHHHHHHhCCceEEehhhchhhhhcCCCChhhhhccccccCceeEeeh
Confidence 99999999998888788999999999999999999999999999999999999999998776666666888999999999
Q ss_pred CCCC-hhhHHHHHhhhcCCCCcEEEEeeccccccCCCCCcccccCCCcCCCEEEEEEccccCCCHHHHHHHHhC
Q 014242 356 SSLK-FETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQV 428 (428)
Q Consensus 356 ~~l~-~g~~~~~~~~~~~~~~~~i~~~ptG~~~~~t~g~~l~~~~~~~~~~~~i~~i~~S~Hs~~~eL~~fv~~ 428 (428)
..+. ...+.++...+...+...+.|+|+||.........-...++....++.++.+|||.||+|.||.+|+++
T Consensus 326 ~~l~~~~~l~~~~~~~~~~~s~~v~~~~tgwt~~~~~s~~~~~~~~~~~~~i~~~~vpYseHSs~~el~~f~~~ 399 (481)
T KOG1361|consen 326 NSLASSPSLKEYESQYEDGYSKLVGFSPTGWTKGKLVSLDKENSRPQSGSKIPISLVPYSEHSSYTELSEFLSK 399 (481)
T ss_pred hhhccccchhhhhcccccCcceeEeecccccccccccccCccccccccccccccccccccccCCHHHHHHHHHh
Confidence 8887 666777788888888899999999999876554332222222222678899999999999999999874
No 4
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-38 Score=327.11 Aligned_cols=304 Identities=24% Similarity=0.343 Sum_probs=243.2
Q ss_pred cCCceEEEcCCCCCCCCC--cceEecCCCcCCCCCccEEEeCCCchhhhCCccccc---CCCcEEeCHHHHHHHHHhhcc
Q 014242 111 HLKKIVDRSCPFYKKIPG--TPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW---SHGPIYCSPLTARLVRMCLLV 185 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~--~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~---~~~~Iy~s~~t~~~l~~~~~~ 185 (428)
.+...+++|||....... .++. ++ .+++|+++|||+|.||+|+++.+. ...+||++++|+.+++.++..
T Consensus 21 ~~~~~il~D~G~~~~~~~~~~p~~-~~-----~~~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~l~d 94 (427)
T COG1236 21 TGGTRILLDCGLFPGDPSPERPLL-PP-----FPKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLLGD 94 (427)
T ss_pred ECCceEEEECCCCcCcCCccCCCC-CC-----CCCcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHHHHHH
Confidence 456899999999764332 1111 12 137999999999999999999643 358999999999988765531
Q ss_pred C--------------------CCceEEcCCCcEEEECCEEEEEEEcccCCCceEEEEEeeCCcEEEEeCCCCCCcccccc
Q 014242 186 N--------------------PSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSY 245 (428)
Q Consensus 186 ~--------------------~~~i~~v~~~~~~~i~~~~V~~~~a~H~~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~ 245 (428)
. ...++++++++++.+++++|+++++||++||+++.++.. +.+|+||||++...+....
T Consensus 95 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHilGsa~~~le~~-~~~ilytGD~~~~~~~l~~ 173 (427)
T COG1236 95 SLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHILGSAAILLEVD-GGRILYTGDVKRRKDRLLN 173 (427)
T ss_pred HHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCccceeEEEEEeC-CceEEEEeccCCCcCCCCC
Confidence 1 135677999999999999999999999999999999984 4579999999987665543
Q ss_pred ccccCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccHHHHHHHHHHHcC----CeEEE
Q 014242 246 PLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALG----VKIYA 321 (428)
Q Consensus 246 ~~l~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGreqell~i~~~~~----~~I~v 321 (428)
+.-....+|+||+|+||+++. ||++....+.+++.|++.+.+|++ |+||+|++||.||++.+++.++ .|||+
T Consensus 174 ~a~~~~~~DvLI~EsTYg~~~--~~~r~~~e~~f~~~v~~~l~~GG~--vlipafa~graQEll~~L~~~~~~~~~pi~~ 249 (427)
T COG1236 174 GAELPPCIDVLIVESTYGDRL--HPNRDEVERRFIESVKAALERGGT--VLIPAFALGRAQELLLILRELGFAGDYPIYV 249 (427)
T ss_pred ccccCCCCcEEEEecccCCcc--CCCHHHHHHHHHHHHHHHHhCCCE--EEEecccccHHHHHHHHHHHHhccCCCCeEe
Confidence 321122379999999999954 499999999999999999999865 9999999999999999999876 89999
Q ss_pred echHHHHHHhc-----CCCc--cc----CC---c--------eecCCCceEEEeecCCCChhhHHHHHhhhcCCCCcEEE
Q 014242 322 NASRRRVLQSF-----DWPE--LS----GN---L--------CTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLA 379 (428)
Q Consensus 322 ~~~~~~i~~~~-----~~~~--~~----~~---~--------~~d~~~~~I~v~~~~~l~~g~~~~~~~~~~~~~~~~i~ 379 (428)
+++..+++..+ ++.+ .. .. + .....++.|++++++|+..|+++.|++.+..+++|.++
T Consensus 250 d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~ 329 (427)
T COG1236 250 DGPIARVALAYAKYPIGLDLPDLLKVAESRFRFVESRRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVL 329 (427)
T ss_pred ccHHHHHHHHHHHhchhccChHHHHHHHhhcccccchhhhhhhhccCCceEEEEecccccCCcHHHHHHHHhcCCcceEE
Confidence 99877665543 2211 10 00 0 11357899999999999999999999999999999999
Q ss_pred EeeccccccCCCCCcccccCC-------CcCCCEEEEEEccccCCCHHHHHHHHh
Q 014242 380 FRPTGWTYSETVGNQLDLIRP-------LSRGNITIYGVPYSEHSSFTELREFVQ 427 (428)
Q Consensus 380 ~~ptG~~~~~t~g~~l~~~~~-------~~~~~~~i~~i~~S~Hs~~~eL~~fv~ 427 (428)
+ +||+.++|.|+.+..... ..+.++++..+.+|+|+|.+||.+||+
T Consensus 330 l--~~~~~~~t~gr~~~~~~~~~~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~ 382 (427)
T COG1236 330 L--PGYQAEGTLGRVLLEGGTSVHIKGIEIKVKARVEELDFSAHADGDELLEFIK 382 (427)
T ss_pred E--cccccCCcchhHHhcCCcEEeecceeecccceEEEeccccccCcHHHHHHHh
Confidence 9 999999999987754331 234467888899999999999999986
No 5
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=2.5e-37 Score=295.18 Aligned_cols=322 Identities=17% Similarity=0.241 Sum_probs=246.9
Q ss_pred eeeccCCCCccc----cCCceEEEcCCCCCCCCCcceEecCCCc----CC-CCCccEEEeCCCchhhhCCcccc----cC
Q 014242 99 KLKASNGKSTAT----HLKKIVDRSCPFYKKIPGTPFTVDAFRY----GS-IKGCSAYFLTHFHYDHYGGLGKR----WS 165 (428)
Q Consensus 99 ~l~~g~~~~~~~----~~~~~~liDcG~~~~~~~~~~~iD~f~~----~~-i~~id~v~iTH~H~DHiggL~~~----~~ 165 (428)
.|+.|.....+. .++.++++|||........+ ..+.|.+ .. -+-||.|+|||+|.||+|+||.+ ++
T Consensus 8 pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~r-RfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY 86 (501)
T KOG1136|consen 8 PLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDR-RFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGY 86 (501)
T ss_pred eccCCcccCceEEEEEECCcEEEEecccccccCccc-cCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCC
Confidence 355555433332 58889999999977644332 2233332 11 24699999999999999999974 57
Q ss_pred CCcEEeCHHHHHHHHHhhcc------C----------------CCceEEcCCCcEEEE-CCEEEEEEEcccCCCceEEEE
Q 014242 166 HGPIYCSPLTARLVRMCLLV------N----------------PSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHF 222 (428)
Q Consensus 166 ~~~Iy~s~~t~~~l~~~~~~------~----------------~~~i~~v~~~~~~~i-~~~~V~~~~a~H~~Gs~~~~~ 222 (428)
.+|||++.+|+++...+++. . -..+..+...+++.+ .+++|+++-+||.+|+++|.+
T Consensus 87 ~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~i 166 (501)
T KOG1136|consen 87 DGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYI 166 (501)
T ss_pred CCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEE
Confidence 89999999999876554431 0 135677888899988 589999999999999999999
Q ss_pred EeeCCcEEEEeCCCCCCccccccc-cccCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEcccc
Q 014242 223 RLQDGQCYLHTGDFRASRLMQSYP-LLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYS 301 (428)
Q Consensus 223 ~~~~g~~ilytGD~~~~~~~~~~~-~l~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~s 301 (428)
.. +..+|+||||.+..++..+.+ .+...++|+||.|+||+.... .++...++++++.+.+++.+|++ |+||.|+
T Consensus 167 kv-Gd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiR--dskr~rERdFLk~VhecVa~GGk--vlIPvFA 241 (501)
T KOG1136|consen 167 KV-GDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIR--DSKRCRERDFLKKVHECVARGGK--VLIPVFA 241 (501)
T ss_pred Ee-cceeEEEecCccCCcccccchhhhccccCceEEeeccceeeec--cccchhHHHHHHHHHHHHhcCCe--EEEEeee
Confidence 98 557999999999988865433 233578999999999998655 56777888999999999999988 9999999
Q ss_pred ccHHHHHHHHHHH------cCCeEEEech----HHHHHHhcC-C-------------CcccCCc------eecCCCceEE
Q 014242 302 IGKESVFLAISKA------LGVKIYANAS----RRRVLQSFD-W-------------PELSGNL------CTQGNDTLLH 351 (428)
Q Consensus 302 lGreqell~i~~~------~~~~I~v~~~----~~~i~~~~~-~-------------~~~~~~~------~~d~~~~~I~ 351 (428)
+||+||+.-+++. +..|||+..- ....|+.+. | ++-.+++ ..+...|.|.
T Consensus 242 LGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~rNmfdfkhiKpfd~~~~~~pGp~Vl 321 (501)
T KOG1136|consen 242 LGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVERNMFDFKHIKPFDRSYIEAPGPMVL 321 (501)
T ss_pred cchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhccCCccccccCChhhhhhhcCCCCEEE
Confidence 9999999777754 3679998641 223333331 1 1111222 2257899999
Q ss_pred EeecCCCChhhHHHHHhhhcCCCCcEEEEeeccccccCCCCCcccccC--CC-----cCCCEEEEEEccccCCCHHHHHH
Q 014242 352 VLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIR--PL-----SRGNITIYGVPYSEHSSFTELRE 424 (428)
Q Consensus 352 v~~~~~l~~g~~~~~~~~~~~~~~~~i~~~ptG~~~~~t~g~~l~~~~--~~-----~~~~~~i~~i~~S~Hs~~~eL~~ 424 (428)
++++|||-.|.+.+.+++|++++.|.|++ .||+..+|.|.++++-. .. ...++.+..+.||+|+|...+++
T Consensus 322 FatPGMLhaG~SLkvFK~W~~~~~Nlvim--PGYcV~GTvG~kvl~G~~kvei~~~~~eirl~V~~maFSaHaDAkGIm~ 399 (501)
T KOG1136|consen 322 FATPGMLHAGFSLKVFKKWCPDPLNLVIM--PGYCVAGTVGHKVLNGATKVEIYGTKVEIRLKVEYMAFSAHADAKGIMQ 399 (501)
T ss_pred EcCCcccccccchHHHHhhCCCccceEee--cCceeccchhhhhhCCccEEEEeeeEEEEEEEEEEeeeccccCchhHHH
Confidence 99999999999999999999999999999 99999999999886521 00 12366788899999999999999
Q ss_pred HHhC
Q 014242 425 FVQV 428 (428)
Q Consensus 425 fv~~ 428 (428)
.+++
T Consensus 400 li~~ 403 (501)
T KOG1136|consen 400 LIKQ 403 (501)
T ss_pred HHHh
Confidence 9874
No 6
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=2.4e-37 Score=310.86 Aligned_cols=326 Identities=15% Similarity=0.245 Sum_probs=263.1
Q ss_pred CCCceeeeccCCCCccc----cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc----C
Q 014242 94 SPPMKKLKASNGKSTAT----HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW----S 165 (428)
Q Consensus 94 ~~~~~~l~~g~~~~~~~----~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~----~ 165 (428)
.-.|..|++||....++ -++..+++|||......+.. .++.+..-....+|.++|||+|.||++.||+.. +
T Consensus 13 ~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~a-slpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf 91 (668)
T KOG1137|consen 13 QLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMA-SLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSF 91 (668)
T ss_pred cEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccc-cccchhhcccccccHHHHhhhhhhhcccccceeeeccc
Confidence 34578889998866655 58889999999988765542 333333335688999999999999999999743 5
Q ss_pred CCcEEeCHHHHHHHHHhhccC---------------------CCceEEcCCCcEEEECCEEEEEEEcccCCCceEEEEEe
Q 014242 166 HGPIYCSPLTARLVRMCLLVN---------------------PSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRL 224 (428)
Q Consensus 166 ~~~Iy~s~~t~~~l~~~~~~~---------------------~~~i~~v~~~~~~~i~~~~V~~~~a~H~~Gs~~~~~~~ 224 (428)
.+.+|++.+|++.++.++... ..++..+.+-+.++++|+++.++.+||..|++||.++.
T Consensus 92 ~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~aGhVlgacMf~vei 171 (668)
T KOG1137|consen 92 IGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYHAGHVLGACMFMVEI 171 (668)
T ss_pred cceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeeccchhhhheeeeeee
Confidence 789999999999887665421 13577888889999999999999999999999999999
Q ss_pred eCCcEEEEeCCCCCCccccc-cccccCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEcccccc
Q 014242 225 QDGQCYLHTGDFRASRLMQS-YPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIG 303 (428)
Q Consensus 225 ~~g~~ilytGD~~~~~~~~~-~~~l~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slG 303 (428)
+|.+++||||+....+..+ ...++..++|++|.|+||+... |.+|++.+.++.+.|..+..+||+ +|+|+|++|
T Consensus 172 -agv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~--h~~r~~re~rlt~vIh~~v~rGGR--~L~PvFAlg 246 (668)
T KOG1137|consen 172 -AGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQI--HEPREEREGRLTWVIHSTVPRGGR--VLIPVFALG 246 (668)
T ss_pred -ceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEe--cCchHHhhhhhhhhHHhhccCCCc--eEeeeeecc
Confidence 7889999999987665433 2345578999999999999744 478899999999999999999986 999999999
Q ss_pred HHHHHHHHHHHc--------CCeEEEechHH----HHHHhc--------------CCCcccCCcee-------cCCCceE
Q 014242 304 KESVFLAISKAL--------GVKIYANASRR----RVLQSF--------------DWPELSGNLCT-------QGNDTLL 350 (428)
Q Consensus 304 reqell~i~~~~--------~~~I~v~~~~~----~i~~~~--------------~~~~~~~~~~~-------d~~~~~I 350 (428)
|+||++.++.++ ++|||+.+..+ .+++.+ .+|+.++++.. ++..|+|
T Consensus 247 rAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~~Npfifk~vs~L~~~D~f~D~gP~v 326 (668)
T KOG1137|consen 247 RAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSALRNPFIFKHVSILRTGDWFDDEGPSV 326 (668)
T ss_pred hHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhccCCceEeeccccccccccccccCCce
Confidence 999999988663 78999987532 233322 23555554432 4789999
Q ss_pred EEeecCCCChhhHHHHHhhhcCCCCcEEEEeeccccccCCCCCcccccCC---CcCC-----CEEEEEEccccCCCHHHH
Q 014242 351 HVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRP---LSRG-----NITIYGVPYSEHSSFTEL 422 (428)
Q Consensus 351 ~v~~~~~l~~g~~~~~~~~~~~~~~~~i~~~ptG~~~~~t~g~~l~~~~~---~~~~-----~~~i~~i~~S~Hs~~~eL 422 (428)
+.+++||++.|.+++.+++|.++++|++++ +||+.++|.++.++.... ..+| +++|..+.||+|.||.+-
T Consensus 327 v~aspgmlqsglSRelfe~wcsD~kN~vli--pGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~ 404 (668)
T KOG1137|consen 327 VMASPGMLQSGLSRELFERWCSDSKNAVLI--PGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQN 404 (668)
T ss_pred eEeCchHhhhhhhHHHHHHhCCCCCCcEEe--ccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeechhhhhh
Confidence 999999999999999999999999999999 999999999988764211 1233 688999999999999999
Q ss_pred HHHHh
Q 014242 423 REFVQ 427 (428)
Q Consensus 423 ~~fv~ 427 (428)
.+|++
T Consensus 405 s~fi~ 409 (668)
T KOG1137|consen 405 SEFIA 409 (668)
T ss_pred HHHHH
Confidence 99975
No 7
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.97 E-value=2.4e-29 Score=259.79 Aligned_cols=308 Identities=18% Similarity=0.220 Sum_probs=205.1
Q ss_pred cCCceEEEcCCCCCC---CCCcceEecCCCc--CCCCCccEEEeCCCchhhhCCccccc---CCCcEEeCHHHHHHHHHh
Q 014242 111 HLKKIVDRSCPFYKK---IPGTPFTVDAFRY--GSIKGCSAYFLTHFHYDHYGGLGKRW---SHGPIYCSPLTARLVRMC 182 (428)
Q Consensus 111 ~~~~~~liDcG~~~~---~~~~~~~iD~f~~--~~i~~id~v~iTH~H~DHiggL~~~~---~~~~Iy~s~~t~~~l~~~ 182 (428)
.++..+++|||.... ..+....++.+.. ....++++|||||+|.||++|++.+. ...+||+++.+..++...
T Consensus 21 ~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~~~~t~~~l~~~ 100 (422)
T TIGR00649 21 IDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYGTPLTIALIKSK 100 (422)
T ss_pred ECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEEeCHHHHHHHHHH
Confidence 467789999998532 1222222332221 12368999999999999999999643 235899999999887755
Q ss_pred hcc---C-CCceEEcCCCcEEEEC-CEEEEEEEccc-CCCceEEEEEeeCCcEEEEeCCCCCCcccccc-c-----c--c
Q 014242 183 LLV---N-PSYIHPLELNTEHVID-GVKVTLLEANH-CPGAALIHFRLQDGQCYLHTGDFRASRLMQSY-P-----L--L 248 (428)
Q Consensus 183 ~~~---~-~~~i~~v~~~~~~~i~-~~~V~~~~a~H-~~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~-~-----~--l 248 (428)
+.. . ...+++++++++++++ +++|++++++| +|||++|+++.++ ++++||||+++....... + . +
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~-~~ivytGD~~~~~~~~~~~~~d~~~l~~~ 179 (422)
T TIGR00649 101 IKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPL-GYIVYTGDFKFDNTPVIGEPPDLNRIAEY 179 (422)
T ss_pred HHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCC-cEEEECCCcCCCCCccCCcccCHHHHHhh
Confidence 431 1 2357789999999995 69999999999 7999999999854 589999999986533211 0 0 1
Q ss_pred cCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEcccc--ccHHHHHHHHHHHcCCeEEEec-hH
Q 014242 249 VNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYS--IGKESVFLAISKALGVKIYANA-SR 325 (428)
Q Consensus 249 ~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~s--lGreqell~i~~~~~~~I~v~~-~~ 325 (428)
...++|+||+|+||+......++.+...+.+.+.++ +.+ ..+++++|+ ++|.|+++++++++++||++.+ +.
T Consensus 180 ~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~----~~~-~~viv~~fa~~~~R~~~i~~~a~~~~r~v~v~g~~~ 254 (422)
T TIGR00649 180 GKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFK----NAK-GRVIVATFASNIHRVQQLIQIARKQGRKFAVYGRSM 254 (422)
T ss_pred cccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH----hCC-CEEEEEEccccHHHHHHHHHHHHHhCCEEEEECccH
Confidence 135799999999999754433555555555444443 222 349999998 7899999999999999999986 44
Q ss_pred HHH---HHhcCCCcccC-C------ceecCCCceEEEeecCCCChhhHHHHHhhhcCCCCcEEEEeecc---ccccCCCC
Q 014242 326 RRV---LQSFDWPELSG-N------LCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTG---WTYSETVG 392 (428)
Q Consensus 326 ~~i---~~~~~~~~~~~-~------~~~d~~~~~I~v~~~~~l~~g~~~~~~~~~~~~~~~~i~~~ptG---~~~~~t~g 392 (428)
.++ ++.+++-...+ . +...++++.|++++++ ++++ ..++.+++.+..+.+-+++.+ |+++.++|
T Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s~~~~~G 331 (422)
T TIGR00649 255 EHLFGIARRLGLIKNPHNNFISLKEVNNSPDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVVFSAPPIPG 331 (422)
T ss_pred HHHHHHHHHcCCccCCccceeCHHHHhcCCcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEEEECCCCCc
Confidence 444 44444211111 1 1112457888888777 5666 555666776654333333311 34677777
Q ss_pred Cc-ccc---cC-CCcCCCEEEE-EEccccCCCHHHHHHHHh
Q 014242 393 NQ-LDL---IR-PLSRGNITIY-GVPYSEHSSFTELREFVQ 427 (428)
Q Consensus 393 ~~-l~~---~~-~~~~~~~~i~-~i~~S~Hs~~~eL~~fv~ 427 (428)
++ +.. ++ ...+.+++++ .+-+|+||+++||..+++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~ 372 (422)
T TIGR00649 332 NENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLR 372 (422)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHH
Confidence 76 211 11 1112334443 478999999999999986
No 8
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.93 E-value=2.1e-24 Score=225.92 Aligned_cols=303 Identities=22% Similarity=0.287 Sum_probs=208.6
Q ss_pred cCCceEEEcCCCCC---CCCCcceEecCCCc--CCCCCccEEEeCCCchhhhCCcccccC---CCcEEeCHHHHHHHHHh
Q 014242 111 HLKKIVDRSCPFYK---KIPGTPFTVDAFRY--GSIKGCSAYFLTHFHYDHYGGLGKRWS---HGPIYCSPLTARLVRMC 182 (428)
Q Consensus 111 ~~~~~~liDcG~~~---~~~~~~~~iD~f~~--~~i~~id~v~iTH~H~DHiggL~~~~~---~~~Iy~s~~t~~~l~~~ 182 (428)
.+++.+++|||..- .+.+.++.|+.+.+ .+..++++|||||+|.||+|++|+++. ..|||+++.|+.+++..
T Consensus 29 ~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~piy~s~lt~~Li~~k 108 (555)
T COG0595 29 YGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPIYASPLTAALIKEK 108 (555)
T ss_pred ECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcCceecCHhhHHHHHHH
Confidence 57799999999933 35566777766643 345799999999999999999998653 37999999999999877
Q ss_pred hccC-----CCceEEcCCCcEEEECCEEEEEEEccc-CCCceEEEEEeeCCcEEEEeCCCCCCccccccc--------cc
Q 014242 183 LLVN-----PSYIHPLELNTEHVIDGVKVTLLEANH-CPGAALIHFRLQDGQCYLHTGDFRASRLMQSYP--------LL 248 (428)
Q Consensus 183 ~~~~-----~~~i~~v~~~~~~~i~~~~V~~~~a~H-~~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~--------~l 248 (428)
+... ...++++++++.++++++.|+++++.| +|+|+++.++++.| .|+|||||++++...... .+
T Consensus 109 ~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G-~Iv~TGDFk~d~~~~~g~~~d~~r~~~~ 187 (555)
T COG0595 109 LKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEG-NIVYTGDFKFDPTPVDGEPTDLARLAEI 187 (555)
T ss_pred HHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCc-cEEEeCCEEecCCcCCCCcCCHHHHHHh
Confidence 5521 246889999999999999999999999 89999999999887 799999999977543211 11
Q ss_pred cCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEcccc--ccHHHHHHHHHHHcCCeEEEechHH
Q 014242 249 VNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYS--IGKESVFLAISKALGVKIYANASRR 326 (428)
Q Consensus 249 ~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~s--lGreqell~i~~~~~~~I~v~~~~~ 326 (428)
...++++||+|||........++.+.+.+.+.+.++++ +.+|++.+|+ ++|-|.++++|.+.|+++.+.+..+
T Consensus 188 g~eGVl~LisdsTna~~pg~t~SE~~v~~~l~~i~~~a-----~grVIv~tfaSni~Ri~~i~~~A~~~gR~vvv~GrSm 262 (555)
T COG0595 188 GKEGVLALISDSTNAENPGFTPSESEVGENLEDIIRNA-----KGRVIVTTFASNIERIQTIIDAAEKLGRKVVVTGRSM 262 (555)
T ss_pred ccCCcEEEEeCCcccCCCCCCCCHHHHHHHHHHHHHhC-----CCcEEEEEchhhHHHHHHHHHHHHHcCCeEEEEcHhH
Confidence 24679999999999986666788888888887777654 3458888887 5788999999999999999998654
Q ss_pred HH----HHhcCCCcccC-Cc------eecCCCceEEEeecCCCChhhHHHHHhhhcCC--------CCcEEEEeeccccc
Q 014242 327 RV----LQSFDWPELSG-NL------CTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQ--------YAAVLAFRPTGWTY 387 (428)
Q Consensus 327 ~i----~~~~~~~~~~~-~~------~~d~~~~~I~v~~~~~l~~g~~~~~~~~~~~~--------~~~~i~~~ptG~~~ 387 (428)
.. .+.+|.-...+ .+ ..-+.+.-+++|+..+ +++... +.+++.+ +...++| ++
T Consensus 263 ~~~~~~a~~lg~~~~~~~~~i~~~~~~~~~~~~~lii~TG~q--gep~aa-L~r~a~~~h~~~~i~~gD~vIf-----ss 334 (555)
T COG0595 263 ERLIAIARRLGYLKLPDESFIEIREVKRYPDEEVLIICTGSQ--GEPMAA-LSRMANGEHRYVKIKEGDTVIF-----SS 334 (555)
T ss_pred HHHHHHHhhcccccCccccccCHHHhccccccceEEEEeCCC--CCchhh-hhHhhcCCccceecCCCCeEEE-----ec
Confidence 33 23333211111 11 1123344566666544 334333 2222222 2333444 33
Q ss_pred cCCCCCcccc---cCCCcCCCEEE-----EEEccccCCCHHHHHHHHh
Q 014242 388 SETVGNQLDL---IRPLSRGNITI-----YGVPYSEHSSFTELREFVQ 427 (428)
Q Consensus 388 ~~t~g~~l~~---~~~~~~~~~~i-----~~i~~S~Hs~~~eL~~fv~ 427 (428)
...+|.+... ++...+..+.+ ..+..|+|++.+||+.+++
T Consensus 335 ~~ipgne~~~~~~~n~l~~~g~~i~~~~~~~~hvSGHas~eel~~mi~ 382 (555)
T COG0595 335 SPIPGNEAAVYRLLNRLYKAGAKVITGGDKKVHVSGHASREELKLMIN 382 (555)
T ss_pred cCcCCcHHHHHHHHHHHHhcCcEEeecccceeEecCCCChHHHHHHHH
Confidence 3334422110 01000111222 3456999999999999875
No 9
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.90 E-value=1.9e-23 Score=209.84 Aligned_cols=197 Identities=20% Similarity=0.186 Sum_probs=149.5
Q ss_pred CCCchhcccc--ccccccceeeeeccccCCccccccCCCCCceeeeccCCCCccccCCc----eEEEcCCCCCCCC---C
Q 014242 58 TDWSCLLQTE--RKLKQANLFDMWGLKSNSESEANCLFSPPMKKLKASNGKSTATHLKK----IVDRSCPFYKKIP---G 128 (428)
Q Consensus 58 ~~w~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~l~~g~~~~~~~~~~~----~~liDcG~~~~~~---~ 128 (428)
-+|||||||| ++.|+++.++|||||+.+.|+|+.++.+++.+.|+++++.+...+.+ ..+.++|....++ .
T Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~~~wlG~a~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~ 97 (355)
T PRK11709 18 PEWGTWLNEEIEQEVVPPGTFAMWWLGCTGIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRT 97 (355)
T ss_pred CchhhhHHHHHHhcccCCCcEEEEEecceEEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCC
Confidence 5899999999 89999999999999999999999999999999999877654433322 2356778765544 3
Q ss_pred cceEecCCCcCCCCCccEEEeCCCchhhhCC--cccc---c-CCCcEEeCHHHHHHHHHhhccCCCceEEcCCCcEEEEC
Q 014242 129 TPFTVDAFRYGSIKGCSAYFLTHFHYDHYGG--LGKR---W-SHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVID 202 (428)
Q Consensus 129 ~~~~iD~f~~~~i~~id~v~iTH~H~DHigg--L~~~---~-~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i~ 202 (428)
.++.+|++ .+.+||+|||||.|.||+.. +..+ . ...+++++..+.+++.. ++++..+++.++.+++++++
T Consensus 98 ~p~~idp~---~i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~-~Gvp~~rv~~v~~Ge~i~ig 173 (355)
T PRK11709 98 QPFVLDPF---AIREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIG-WGVPKERCIVVKPGDVVKVK 173 (355)
T ss_pred CCcccCHH---HCCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHh-cCCCcceEEEecCCCcEEEC
Confidence 45667765 56789999999999999842 1221 1 24568888887766543 46666788999999999999
Q ss_pred CEEEEEEEcccC----------------------CCceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEEEEec
Q 014242 203 GVKVTLLEANHC----------------------PGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDT 260 (428)
Q Consensus 203 ~~~V~~~~a~H~----------------------~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~ 260 (428)
+++|+++++.|. ..+++|+|+. ++++|+|+||+.+.+..... ....++|++++..
T Consensus 174 ~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~-~~~tvy~sGDT~~~~~~~~i--~~~~~iDvall~i 250 (355)
T PRK11709 174 DIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKT-PGGNIYHSGDSHYSNYFAKH--GNDHQIDVALGSY 250 (355)
T ss_pred CEEEEEEeccccccccccccccccccccccccCCcceEEEEEEe-CCeEEEEeCCCCccHHHHHH--HhcCCCCEEEecC
Confidence 999999999552 1257899998 56799999999997644321 1234799999855
Q ss_pred C
Q 014242 261 T 261 (428)
Q Consensus 261 T 261 (428)
.
T Consensus 251 G 251 (355)
T PRK11709 251 G 251 (355)
T ss_pred C
Confidence 3
No 10
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=99.84 E-value=4.9e-19 Score=183.16 Aligned_cols=277 Identities=14% Similarity=0.133 Sum_probs=208.2
Q ss_pred cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccc----ccCCCcEEeCHHHHHHHHHhh---
Q 014242 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK----RWSHGPIYCSPLTARLVRMCL--- 183 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~----~~~~~~Iy~s~~t~~~l~~~~--- 183 (428)
..+-.+|+|||+....... .++++. .-+..||+|+|||...=|+||||+ .+.+.+||++-++.++-+..+
T Consensus 22 iD~~~iLiDcGwd~~f~~~--~i~~l~-~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~ 98 (764)
T KOG1135|consen 22 IDGVRILIDCGWDESFDMS--MIKELK-PVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDL 98 (764)
T ss_pred EcCeEEEEeCCCcchhccc--hhhhhh-cccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhhHHHH
Confidence 5778999999997653221 233332 246899999999999999999996 334589999999887654321
Q ss_pred -cc-----------------CCCceEEcCCCcEEEEC----CEEEEEEEcccCCCceEEEEEeeCCcEEEEeCCCCCCcc
Q 014242 184 -LV-----------------NPSYIHPLELNTEHVID----GVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRL 241 (428)
Q Consensus 184 -~~-----------------~~~~i~~v~~~~~~~i~----~~~V~~~~a~H~~Gs~~~~~~~~~g~~ilytGD~~~~~~ 241 (428)
.- .-.++.++++.|++.+. |++|++++|||++|...|.|.. .+.+|+|+-|++...+
T Consensus 99 ~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k-~~E~ivYavd~NHkKe 177 (764)
T KOG1135|consen 99 YRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISK-VGEDIVYAVDFNHKKE 177 (764)
T ss_pred HhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEe-cCceEEEEEecccchh
Confidence 10 12478999999999984 6799999999999988888886 5679999999999877
Q ss_pred cccccc--ccCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccHHHHHHHHHHHc----
Q 014242 242 MQSYPL--LVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKAL---- 315 (428)
Q Consensus 242 ~~~~~~--l~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGreqell~i~~~~---- 315 (428)
..+... -...++.+||.++....- ..++++...++|+..|.++++.+|+ |+||+-..||--|+..++.++
T Consensus 178 ~HLNG~~l~~l~RPsllITda~~~~~--~~~~rkkRDe~f~d~v~~~L~~~G~--VlipVDtAgRvLELa~iLdqlws~~ 253 (764)
T KOG1135|consen 178 RHLNGCSLSGLNRPSLLITDANHALY--SQPRRKKRDEQFLDTVLKTLRSGGN--VLIPVDTAGRVLELALILDQLWSQS 253 (764)
T ss_pred cccCCccccccCCcceEEeccccccc--cccchhHHHHHHHHHHHHHhcCCCc--EEEEecccHHHHHHHHHHHHHHhcc
Confidence 654431 124789999999987653 3488999999999999999999987 999999999998887777553
Q ss_pred --C---CeEEEec----hHH------------HHHHhc----CCCcccCCcee---------cCCCceEEEeecCCCChh
Q 014242 316 --G---VKIYANA----SRR------------RVLQSF----DWPELSGNLCT---------QGNDTLLHVLPMSSLKFE 361 (428)
Q Consensus 316 --~---~~I~v~~----~~~------------~i~~~~----~~~~~~~~~~~---------d~~~~~I~v~~~~~l~~g 361 (428)
| .|+++-. ... ++.+.+ ..|+.+++++. -+.+|.|++|+...+.-|
T Consensus 254 ~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr~p~gpkVVlas~~~lE~G 333 (764)
T KOG1135|consen 254 DAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSRVPPGPKVVLASVPDLECG 333 (764)
T ss_pred cCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhcCCCCCeEEEeeccchhcc
Confidence 2 4665532 111 222222 23555554432 267799999999999999
Q ss_pred hHHHHHhhhcCCCCcEEEEeeccccccCCCCCcccc
Q 014242 362 TLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDL 397 (428)
Q Consensus 362 ~~~~~~~~~~~~~~~~i~~~ptG~~~~~t~g~~l~~ 397 (428)
.++..+-.|.++++|.|+| |--..++|.++++..
T Consensus 334 fsrd~fl~w~~d~~N~ill--t~r~~~~tLa~el~~ 367 (764)
T KOG1135|consen 334 FSRDLFLEWASDPRNLILL--TERGSPGTLARELIS 367 (764)
T ss_pred hhHHHHHHHhcCCcceEEE--ecCCCchhHHHHHhh
Confidence 9999888999999999999 555578888776643
No 11
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.75 E-value=1.8e-18 Score=170.55 Aligned_cols=165 Identities=20% Similarity=0.170 Sum_probs=114.4
Q ss_pred cccCCCCCceeeeccCCCCccc--cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc--
Q 014242 89 ANCLFSPPMKKLKASNGKSTAT--HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW-- 164 (428)
Q Consensus 89 ~~~g~~~~~~~l~~g~~~~~~~--~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~-- 164 (428)
.++|+|+++.....++ ++.+ .++..+++|||...........+ ...++++|||||.|.||++||+.+.
T Consensus 3 ~~lGtg~~~p~~~r~~--~~~~v~~~~~~iLiD~G~g~~~~l~~~~~------~~~~i~~IfiTH~H~DH~~Gl~~l~~~ 74 (299)
T TIGR02651 3 TFLGTGGGVPTKERNL--PSIALKLNGELWLFDCGEGTQRQMLRSGI------SPMKIDRIFITHLHGDHILGLPGLLST 74 (299)
T ss_pred EEEeCCCCCCCCCCCC--ceEEEEECCeEEEEECCHHHHHHHHHcCC------CHHHCcEEEEECCchhhhcChHHHHHh
Confidence 4556666554322222 2222 45678999999853211001111 2357999999999999999998531
Q ss_pred -------CCCcEEeCHHHHHHHHHhhcc------CCCceEEcCCCc-EEEECCEEEEEEEcccCCCceEEEEEeeC----
Q 014242 165 -------SHGPIYCSPLTARLVRMCLLV------NPSYIHPLELNT-EHVIDGVKVTLLEANHCPGAALIHFRLQD---- 226 (428)
Q Consensus 165 -------~~~~Iy~s~~t~~~l~~~~~~------~~~~i~~v~~~~-~~~i~~~~V~~~~a~H~~Gs~~~~~~~~~---- 226 (428)
...+||+++.+.+.+...+.. ....+.++..++ .+.+++++|+++++.|...+++|.|+.++
T Consensus 75 ~~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~~~ 154 (299)
T TIGR02651 75 MSFQGRKEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLDHSIPSLGYRFEEKDRPGK 154 (299)
T ss_pred hccCCCCceEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcCCCCceEEEEEEECCCCCC
Confidence 245799999988776543321 112456777887 58889999999999998889999998631
Q ss_pred ---------------------------------------------CcEEEEeCCCCCCccccccccccCCCccEEEEecC
Q 014242 227 ---------------------------------------------GQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTT 261 (428)
Q Consensus 227 ---------------------------------------------g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~T 261 (428)
|++++|+||++..+... .. ..++|+||+|||
T Consensus 155 ~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~--~~--~~~~dlLi~E~~ 230 (299)
T TIGR02651 155 FDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVI--EF--AKNADLLIHEAT 230 (299)
T ss_pred cCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHHHH--HH--HcCCCEEEEECC
Confidence 46899999999876533 22 368999999999
Q ss_pred CCCC
Q 014242 262 YCNP 265 (428)
Q Consensus 262 y~~~ 265 (428)
|...
T Consensus 231 ~~~~ 234 (299)
T TIGR02651 231 FLDE 234 (299)
T ss_pred CCch
Confidence 9864
No 12
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.74 E-value=6.1e-18 Score=167.46 Aligned_cols=163 Identities=16% Similarity=0.022 Sum_probs=114.8
Q ss_pred ccCCCCCceeeeccCCCCcccc---C---CceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCcccc
Q 014242 90 NCLFSPPMKKLKASNGKSTATH---L---KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR 163 (428)
Q Consensus 90 ~~g~~~~~~~l~~g~~~~~~~~---~---~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~ 163 (428)
++|+|+++.....++ .+.+. + +..+|+|||...........+ ...+|++|||||.|.||++|++.+
T Consensus 3 ~LGt~~~~p~~~r~~--s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~~i------~~~~id~IfiTH~H~DHi~Gl~~l 74 (303)
T TIGR02649 3 FLGTSAGVPTRTRNV--TAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAF------NPGKLDKIFISHLHGDHLFGLPGL 74 (303)
T ss_pred EEecCCCCCCCCCCc--cEEEEEccCCCCCCEEEEECCccHHHHHHHhCC------CHHHCcEEEEeCCChhhcCCHHHH
Confidence 456666665433333 12221 1 468999999865321111112 236899999999999999999852
Q ss_pred c---------CCCcEEeCHHHHHHHHHhhcc------CCCceEEcCCCcEEEECCEEEEEEEcccCCCceEEEEEee---
Q 014242 164 W---------SHGPIYCSPLTARLVRMCLLV------NPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQ--- 225 (428)
Q Consensus 164 ~---------~~~~Iy~s~~t~~~l~~~~~~------~~~~i~~v~~~~~~~i~~~~V~~~~a~H~~Gs~~~~~~~~--- 225 (428)
. ...+||+++.+.+.+...+.. .+..++.+..++.+..++++|+++++.|...+++|.|+.+
T Consensus 75 l~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~ 154 (303)
T TIGR02649 75 LCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKP 154 (303)
T ss_pred HHHHHhcCCCCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEccCccceEEEEEeccCCc
Confidence 1 246899999988876654321 1234567778888888899999999999888999999852
Q ss_pred ----------------------------------------------CCcEEEEeCCCCCCccccccccccCCCccEEEEe
Q 014242 226 ----------------------------------------------DGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLD 259 (428)
Q Consensus 226 ----------------------------------------------~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E 259 (428)
.|++|+|+||++..+... .. ..++|+||+|
T Consensus 155 g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~--~~--~~~adlLi~E 230 (303)
T TIGR02649 155 GALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAAL--DL--AKGVDVMVHE 230 (303)
T ss_pred CCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHHHH--HH--hcCCCEEEEe
Confidence 356899999999865433 22 3799999999
Q ss_pred cCCCC
Q 014242 260 TTYCN 264 (428)
Q Consensus 260 ~Ty~~ 264 (428)
|||..
T Consensus 231 at~~~ 235 (303)
T TIGR02649 231 ATLDI 235 (303)
T ss_pred ccCCh
Confidence 99965
No 13
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.74 E-value=1.7e-17 Score=159.80 Aligned_cols=142 Identities=19% Similarity=0.086 Sum_probs=102.6
Q ss_pred cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCcccc----cCCCcEEeCHHHHHHHHHhhccC
Q 014242 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR----WSHGPIYCSPLTARLVRMCLLVN 186 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~----~~~~~Iy~s~~t~~~l~~~~~~~ 186 (428)
.++..+++|||..... . .++ ..+||+|||||.|.||++|+..+ ....+||+++.+..+.. .+..+
T Consensus 44 ~~~~~iLiD~G~~~~~--~--~~~------~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~-~~~~~ 112 (250)
T PRK11244 44 FNGARTLIDAGLPDLA--E--RFP------PGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDD-LFKHP 112 (250)
T ss_pred ECCCEEEEECCChHHh--h--cCC------cccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHH-HhcCc
Confidence 4667899999964311 1 112 26899999999999999999743 23568999876543322 22211
Q ss_pred -CCce-EEcCCCcEEEECCEEEEEEEcccCCCceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEEEEecCCCC
Q 014242 187 -PSYI-HPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCN 264 (428)
Q Consensus 187 -~~~i-~~v~~~~~~~i~~~~V~~~~a~H~~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~Ty~~ 264 (428)
...+ ..++.++++.+++++|+++++.|..++++|+++. ++++++|+||+...++.. ...+...++|+||+|+||..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~I~~~~~~H~~~s~g~~i~~-~~~~i~ysgDt~~~~~~~-~~~~~~~~~Dlli~e~~~~~ 190 (250)
T PRK11244 113 GILDFSHPLEPFEPFDLGGLQVTPLPLNHSKLTFGYLLET-AHSRVAYLTDTVGLPEDT-LKFLRNNQPDLLVLDCSHPP 190 (250)
T ss_pred cccccccccCCCCCeeECCEEEEEEeeCCCcceeEEEEec-CCeEEEEEcCCCCCCHHH-HHHHhcCCCCEEEEeCcCCC
Confidence 1122 3577889999999999999999988999999997 667999999998754422 12222368999999999975
Q ss_pred C
Q 014242 265 P 265 (428)
Q Consensus 265 ~ 265 (428)
.
T Consensus 191 ~ 191 (250)
T PRK11244 191 Q 191 (250)
T ss_pred C
Confidence 4
No 14
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.72 E-value=9e-17 Score=153.56 Aligned_cols=142 Identities=22% Similarity=0.137 Sum_probs=102.2
Q ss_pred cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCcccc----cCCCcEEeCHHHHHHHHHhhccC
Q 014242 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR----WSHGPIYCSPLTARLVRMCLLVN 186 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~----~~~~~Iy~s~~t~~~l~~~~~~~ 186 (428)
.++..+++|||..... . .+ ...+|++|||||.|.||++|+..+ ....+||+++.+..+.. .....
T Consensus 34 ~~~~~iliD~G~~~~~--~--~~------~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~-~~~~~ 102 (238)
T TIGR03307 34 FNGARTLIDAGLTDLA--E--RF------PPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDD-LFKHP 102 (238)
T ss_pred ECCcEEEEECCChhHh--h--cc------CccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHH-HhcCc
Confidence 4567899999964311 1 11 225799999999999999999642 24578999987754322 22211
Q ss_pred -CCce-EEcCCCcEEEECCEEEEEEEcccCCCceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEEEEecCCCC
Q 014242 187 -PSYI-HPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCN 264 (428)
Q Consensus 187 -~~~i-~~v~~~~~~~i~~~~V~~~~a~H~~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~Ty~~ 264 (428)
...+ ..+..++++.+++++|+++++.|..++++|.|+. ++++++|+||+...++... ..+...++|+||+||++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~g~~i~~-~~~~i~y~gDt~~~~~~~~-~~~~~~~~D~li~e~~~~~ 180 (238)
T TIGR03307 103 GILDFSKPLEAFEPFDLGGLRVTPLPLVHSKLTFGYLLET-DGQRVAYLTDTAGLPPDTE-AFLKNHPLDVLILDCSHPP 180 (238)
T ss_pred ccccccccccCCceEEECCEEEEEEecCCCCcceEEEEec-CCcEEEEEecCCCCCHHHH-HHHhcCCCCEEEEeCCcCc
Confidence 1112 3477889999999999999999988899999997 6779999999986543321 2222348999999999964
Q ss_pred C
Q 014242 265 P 265 (428)
Q Consensus 265 ~ 265 (428)
.
T Consensus 181 ~ 181 (238)
T TIGR03307 181 Q 181 (238)
T ss_pred c
Confidence 3
No 15
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.68 E-value=2.3e-16 Score=156.11 Aligned_cols=146 Identities=14% Similarity=0.063 Sum_probs=100.5
Q ss_pred ceEEEcCCCCCCCCCcce-EecCCCcCCCCCccEEEeCCCchhhhCCccccc--CCCcEEeCHHHHHHHHHhhc---c--
Q 014242 114 KIVDRSCPFYKKIPGTPF-TVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW--SHGPIYCSPLTARLVRMCLL---V-- 185 (428)
Q Consensus 114 ~~~liDcG~~~~~~~~~~-~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~--~~~~Iy~s~~t~~~l~~~~~---~-- 185 (428)
..+|||||.......... ...+.....+.+||+|||||.|.||++||+.+. ...+||+++.+.+.+...+. .
T Consensus 50 ~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~~l~Vyg~~~~~~~l~~~~~~f~~~~ 129 (302)
T PRK05184 50 DWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQPFPVYATPAVLEDLSTGFPIFNVLD 129 (302)
T ss_pred EEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCCCeEEEeCHHHHHHHHhcCCcccccc
Confidence 458999998553211111 011111113468999999999999999998653 46789999999887764311 1
Q ss_pred --CCCceEEcCCCcEEEEC---CEEEEEEEccc-------------CCCceEEEEE-eeCCcEEEEeCCCCCCccccccc
Q 014242 186 --NPSYIHPLELNTEHVID---GVKVTLLEANH-------------CPGAALIHFR-LQDGQCYLHTGDFRASRLMQSYP 246 (428)
Q Consensus 186 --~~~~i~~v~~~~~~~i~---~~~V~~~~a~H-------------~~Gs~~~~~~-~~~g~~ilytGD~~~~~~~~~~~ 246 (428)
....++++..+++++++ +++|+++++.| ...+++|+|+ ..+|++++|++|+...++.. ..
T Consensus 130 ~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~-~~ 208 (302)
T PRK05184 130 HYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDAL-RA 208 (302)
T ss_pred cccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHH-HH
Confidence 11245678888889886 89999999975 3468999995 23678899998874333322 22
Q ss_pred cccCCCccEEEEecCC
Q 014242 247 LLVNHRVNVLYLDTTY 262 (428)
Q Consensus 247 ~l~~~~~D~Li~E~Ty 262 (428)
. .+++|+||+|||+
T Consensus 209 ~--~~gaDlli~da~~ 222 (302)
T PRK05184 209 R--LAGADCVLFDGTL 222 (302)
T ss_pred H--HhcCCEEEEeCCC
Confidence 2 3689999999984
No 16
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.66 E-value=4.8e-16 Score=153.63 Aligned_cols=206 Identities=12% Similarity=0.007 Sum_probs=127.6
Q ss_pred CCceEEEcCCCCCCCCCcce-EecCCCcCCCCCccEEEeCCCchhhhCCccccc--CCCcEEeCHHHHHHHHHh--hc-c
Q 014242 112 LKKIVDRSCPFYKKIPGTPF-TVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW--SHGPIYCSPLTARLVRMC--LL-V 185 (428)
Q Consensus 112 ~~~~~liDcG~~~~~~~~~~-~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~--~~~~Iy~s~~t~~~l~~~--~~-~ 185 (428)
++..+|||||.......... .+-+.....+.+|++|||||.|.||+.||+.+. ...+||+++.|.+.+... +. .
T Consensus 47 g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~~lpVya~~~t~~~L~~~~~~~~~ 126 (302)
T TIGR02108 47 GERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQPFTLYATEMVLQDLSDNPIFNVL 126 (302)
T ss_pred CCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCCCceEEECHHHHHHHHhCCCcccc
Confidence 45688999998543211111 010110113478999999999999999999643 468999999999877531 11 1
Q ss_pred C--CCceEEcCCCcEEEEC-----CEEEEEEEcc--------c------CCCceEEEEEeeC--CcEEEEeCCCCCCccc
Q 014242 186 N--PSYIHPLELNTEHVID-----GVKVTLLEAN--------H------CPGAALIHFRLQD--GQCYLHTGDFRASRLM 242 (428)
Q Consensus 186 ~--~~~i~~v~~~~~~~i~-----~~~V~~~~a~--------H------~~Gs~~~~~~~~~--g~~ilytGD~~~~~~~ 242 (428)
. ....++++.++++.+. +++|+++++. | ...+++|.|+. + |++++|++|+...++.
T Consensus 127 ~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~-~~~g~~~~y~tD~g~~~~~ 205 (302)
T TIGR02108 127 DHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIED-GTTGKRLFYIPGCAEITDD 205 (302)
T ss_pred chhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEe-CCCCcEEEEECCCCCCCHH
Confidence 1 1123567788888774 5999999998 5 13689999997 5 7899999999854443
Q ss_pred cccccccCCCccEEEEecCC-CCC-------------CCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccH----
Q 014242 243 QSYPLLVNHRVNVLYLDTTY-CNP-------------KYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK---- 304 (428)
Q Consensus 243 ~~~~~l~~~~~D~Li~E~Ty-~~~-------------~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGr---- 304 (428)
. ...+ .++|+||+|+|| .+. ...|.+...+.+.+. ...+.+.+. +++.+.+..-
T Consensus 206 ~-~~~l--~~~d~liida~~~~d~e~l~~g~ypri~~~~gHls~~~~~~al~----~~~~~~~~~-~~l~Hl~h~~~~~~ 277 (302)
T TIGR02108 206 L-KARM--AGADLVFFDGTLWRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLA----VLADLEIAR-KVLIHINNTNPILD 277 (302)
T ss_pred H-HHHH--hCCCEEEEeCCCCCcHHHHhcCCCCCcCCCCCCCCccchHHHHH----HhhcCCCCc-EEEEecCCCCcCCC
Confidence 3 2333 679999999994 331 112444443333222 222334443 4444444321
Q ss_pred -HHHHHHHHHHcCCeEEEechHH
Q 014242 305 -ESVFLAISKALGVKIYANASRR 326 (428)
Q Consensus 305 -eqell~i~~~~~~~I~v~~~~~ 326 (428)
+..+.+.+...++.+-+|++..
T Consensus 278 ~~~~~~~~~~~~~~~~ayDG~~~ 300 (302)
T TIGR02108 278 EDSPERAEVEAAGWEVAYDGMEI 300 (302)
T ss_pred CCCHHHHHHHHcCCEEecCCcEE
Confidence 2233444555788888888753
No 17
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.66 E-value=2.4e-16 Score=144.59 Aligned_cols=139 Identities=23% Similarity=0.297 Sum_probs=99.9
Q ss_pred eEEEcCCCCCC--CCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc-----CCCcEEeCHHHHHHHHH-hhcc-
Q 014242 115 IVDRSCPFYKK--IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW-----SHGPIYCSPLTARLVRM-CLLV- 185 (428)
Q Consensus 115 ~~liDcG~~~~--~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~-----~~~~Iy~s~~t~~~l~~-~~~~- 185 (428)
++|+|||.... .-... ..... ..+.++|+|||||.|.||+.|++.+. ...+||+++.+.+.+.. .++.
T Consensus 2 ~iLiD~g~~~~~~~~~~~-~~~~~--~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 78 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQ-IMQEL--EDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGIL 78 (194)
T ss_dssp EEEESE-TTHHHHTHCHH-HTCSS--SSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHH
T ss_pred EEEEeCCCCccccccccc-ccccc--cccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhcccc
Confidence 68999999542 00000 00111 02248999999999999999976421 12289999999988873 2221
Q ss_pred ------CCCceEEcCCCcEEEECCEEEEEEEcccCCCceE----EEEEeeCCcEEEEeCCCCCCccccccccccCCCccE
Q 014242 186 ------NPSYIHPLELNTEHVIDGVKVTLLEANHCPGAAL----IHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNV 255 (428)
Q Consensus 186 ------~~~~i~~v~~~~~~~i~~~~V~~~~a~H~~Gs~~----~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~ 255 (428)
....+..+..++.+++++++|+++++.|..++.+ |+++. +|++|+|+||+.. .. ..+ .++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~~~~~g~~i~~-~~~~i~~~gD~~~--~~---~~~--~~~D~ 150 (194)
T PF12706_consen 79 DLYPEEDNFDIIEISPGDEFEIGDFRITPFPANHGPPSYGGNKGFVIEP-DGKKIFYSGDTNY--DF---EEL--KNIDL 150 (194)
T ss_dssp TTCCTTSGEEEEEECTTEEEEETTEEEEEEEEESSSCCEEECCEEEEEE-TTEEEEEETSSSS--CH---HHH--TTBSE
T ss_pred cccccccceeEEEeccCceEEeceEEEEEEeccccccccccCceEEEec-CCcceEEeeccch--hh---hhh--ccCCE
Confidence 1234677888999999999999999999888887 99996 7889999999999 21 223 67999
Q ss_pred EEEecCCCC
Q 014242 256 LYLDTTYCN 264 (428)
Q Consensus 256 Li~E~Ty~~ 264 (428)
+|+||++..
T Consensus 151 li~~~~~~~ 159 (194)
T PF12706_consen 151 LILECGYID 159 (194)
T ss_dssp EEEEBCBSS
T ss_pred EEEeCCCcc
Confidence 999999984
No 18
>PRK02126 ribonuclease Z; Provisional
Probab=99.61 E-value=1e-14 Score=146.12 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=100.9
Q ss_pred CCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc-------CCCcEEeCHHHHHHHHHhhc
Q 014242 112 LKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW-------SHGPIYCSPLTARLVRMCLL 184 (428)
Q Consensus 112 ~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~-------~~~~Iy~s~~t~~~l~~~~~ 184 (428)
++..+++|||. .. .+ .. ..+.+|++|||||.|.||++|++.+. ...+||+++.+.+.+...+.
T Consensus 26 ~~~~iLiD~G~-~~----~l-~~----~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~~ 95 (334)
T PRK02126 26 ERRALLFDLGD-LH----HL-PP----RELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKLA 95 (334)
T ss_pred CCeEEEEcCCC-HH----HH-hh----cCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHhc
Confidence 46789999997 11 11 11 13468999999999999999999531 24689999999988876653
Q ss_pred cC----------CCceEEcC----------------------------CCcEEEECCEEEEEEEcccCCCceEEEEEee-
Q 014242 185 VN----------PSYIHPLE----------------------------LNTEHVIDGVKVTLLEANHCPGAALIHFRLQ- 225 (428)
Q Consensus 185 ~~----------~~~i~~v~----------------------------~~~~~~i~~~~V~~~~a~H~~Gs~~~~~~~~- 225 (428)
.. ...+..++ .+..+..++++|+++++.|...+++|.|+.+
T Consensus 96 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~vp~~gy~~~e~~ 175 (334)
T PRK02126 96 GYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGIPCLAFALEEKA 175 (334)
T ss_pred cccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCCceeEEEEEecC
Confidence 10 01121111 2333556899999999999878999999841
Q ss_pred -----------------------------------------------------------------CCcEEEEeCCCCCCc
Q 014242 226 -----------------------------------------------------------------DGQCYLHTGDFRASR 240 (428)
Q Consensus 226 -----------------------------------------------------------------~g~~ilytGD~~~~~ 240 (428)
.|++|+|+||++..+
T Consensus 176 ~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~~~~ 255 (334)
T PRK02126 176 HINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTDIGYTE 255 (334)
T ss_pred CcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECCCCCCc
Confidence 256899999999876
Q ss_pred ccc--ccccccCCCccEEEEecCCCCC
Q 014242 241 LMQ--SYPLLVNHRVNVLYLDTTYCNP 265 (428)
Q Consensus 241 ~~~--~~~~l~~~~~D~Li~E~Ty~~~ 265 (428)
+.. .... .+++|+||+||||...
T Consensus 256 ~~~~~l~~~--a~~aDlLI~Eat~~~~ 280 (334)
T PRK02126 256 ENLARIVEL--AAGVDLLFIEAVFLDE 280 (334)
T ss_pred ccHHHHHHH--HcCCCEEEEEcccChH
Confidence 421 1121 4799999999999864
No 19
>PRK02113 putative hydrolase; Provisional
Probab=99.60 E-value=6.7e-15 Score=141.72 Aligned_cols=138 Identities=18% Similarity=0.174 Sum_probs=101.3
Q ss_pred cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCcccc-----cCCCcEEeCHHHHHHHHHhhcc
Q 014242 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR-----WSHGPIYCSPLTARLVRMCLLV 185 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~-----~~~~~Iy~s~~t~~~l~~~~~~ 185 (428)
.++..+++|||......... . .+.++|+|||||.|.||++||+.+ ....+||+++.+.+.+......
T Consensus 42 ~~~~~iLiD~G~g~~~~l~~--~------~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~ 113 (252)
T PRK02113 42 TEGARILIDCGPDFREQMLR--L------PFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMPY 113 (252)
T ss_pred ECCeEEEEECCchHHHHHHh--c------CccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCCe
Confidence 46778999999853211000 1 236899999999999999999843 2467899999988777654211
Q ss_pred ----------CCCceEEcCCCcEEEECCEEEEEEEcccC-CCceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCcc
Q 014242 186 ----------NPSYIHPLELNTEHVIDGVKVTLLEANHC-PGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVN 254 (428)
Q Consensus 186 ----------~~~~i~~v~~~~~~~i~~~~V~~~~a~H~-~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D 254 (428)
....++.+++++++++++++|+++++.|. ..+++|.+ + +++|+||+...++... .. .+++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~H~~~~~~gy~i----~-~i~y~~Dt~~~~~~~~-~~--~~~~D 185 (252)
T PRK02113 114 CFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVMHGKLPILGYRI----G-KMAYITDMLTMPEEEY-EQ--LQGID 185 (252)
T ss_pred eeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEecCCCccEEEEEe----C-CEEEccCCCCCCHHHH-HH--hcCCC
Confidence 11346788899999999999999999995 45777777 2 6999999986544221 22 37899
Q ss_pred EEEEecCCCC
Q 014242 255 VLYLDTTYCN 264 (428)
Q Consensus 255 ~Li~E~Ty~~ 264 (428)
+||+|+++..
T Consensus 186 lLi~e~~~~~ 195 (252)
T PRK02113 186 VLVMNALRIA 195 (252)
T ss_pred EEEEhhhcCC
Confidence 9999998743
No 20
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.59 E-value=3.9e-15 Score=146.51 Aligned_cols=221 Identities=15% Similarity=0.101 Sum_probs=122.1
Q ss_pred ccccCCCCCceeeeccCCCCccccCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCcccc----
Q 014242 88 EANCLFSPPMKKLKASNGKSTATHLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---- 163 (428)
Q Consensus 88 ~~~~g~~~~~~~l~~g~~~~~~~~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~---- 163 (428)
+.++|+|+++...-.+..+-....++...|+|||......-....+. ..+|++|||||.|.||+.||+.+
T Consensus 4 i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~~l~~~~~~------~~~i~~IfITH~H~DHi~gL~~ll~~~ 77 (292)
T COG1234 4 ITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQHQLLRAGLP------PRKIDAIFITHLHGDHIAGLPGLLVSR 77 (292)
T ss_pred EEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHHHHHHhcCC------hhhccEEEeeccccchhcCcHHHHHHh
Confidence 35667776655433332111112477888999998553221112222 25799999999999999999941
Q ss_pred -----cCCCcEEeCHHHHHHHHHhhccC------CCceEEcCC---------------------CcEEEEC---------
Q 014242 164 -----WSHGPIYCSPLTARLVRMCLLVN------PSYIHPLEL---------------------NTEHVID--------- 202 (428)
Q Consensus 164 -----~~~~~Iy~s~~t~~~l~~~~~~~------~~~i~~v~~---------------------~~~~~i~--------- 202 (428)
.....||.++..++.+...+... +...+.+.. .+....+
T Consensus 78 ~~~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~~ 157 (292)
T COG1234 78 SFRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLKG 157 (292)
T ss_pred hccCCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEeccCceEEEEEecCCCccccceeeecCCCcCcCCHHHhcC
Confidence 12358999987666554332211 001111110 0000111
Q ss_pred ---CEEEEEEEcccC----CCceEEEEEee-CCcEEEEeCCCCCCccccccccccCCCccEEEEecCCCCCCCCC-CCh-
Q 014242 203 ---GVKVTLLEANHC----PGAALIHFRLQ-DGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKF-PSK- 272 (428)
Q Consensus 203 ---~~~V~~~~a~H~----~Gs~~~~~~~~-~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~Ty~~~~~~~-ps~- 272 (428)
+..++.++++|+ .-...+++..+ .|++|+|+||+++++..... .+++|+||+||||.+..... ...
T Consensus 158 ~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~~~~~~----a~~aDlLiHEat~~~~~~~~a~~~~ 233 (292)
T COG1234 158 LPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCDELIDL----AKGADLLIHEATFEDDLEDLANEGG 233 (292)
T ss_pred CCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCHHHHHH----hcCCCEEEEeccCCchhhhHHhhcC
Confidence 467777788886 33333333332 45799999999998876532 38999999999997643211 111
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEccccc-c--HHHHHHHHHH-HcCCeEEEe
Q 014242 273 EDVLNYVVRLTKNCLKKQPKTLVVVGAYSI-G--KESVFLAISK-ALGVKIYAN 322 (428)
Q Consensus 273 ~~~~~~l~~~i~~~l~~g~~~lvli~~~sl-G--reqell~i~~-~~~~~I~v~ 322 (428)
+...++..+..++ .+.+.+++. +++- . ...+++..++ .+.-++.+.
T Consensus 234 HsT~~eAa~iA~~---A~vk~LiLt-H~s~ry~~~~~~~~~ea~~~f~~~~~~a 283 (292)
T COG1234 234 HSTAEEAAEIAKE---AGVKKLILT-HFSPRYPKDDEELLKEARAIFPGETIVA 283 (292)
T ss_pred CCCHHHHHHHHHH---cCCCeEEEE-eecccccchHHHHHHHHHHhCCCceEEe
Confidence 3444455554443 355555554 3332 2 2344544444 344355543
No 21
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=99.58 E-value=7.3e-15 Score=124.02 Aligned_cols=94 Identities=49% Similarity=0.830 Sum_probs=79.8
Q ss_pred CcccCCceecCCCceEEEeecCCCChhhHHHHHhhhcCCCCcEEEEeeccccccCCCCCcccccCC--CcCCCEEEEEEc
Q 014242 335 PELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRP--LSRGNITIYGVP 412 (428)
Q Consensus 335 ~~~~~~~~~d~~~~~I~v~~~~~l~~g~~~~~~~~~~~~~~~~i~~~ptG~~~~~t~g~~l~~~~~--~~~~~~~i~~i~ 412 (428)
|++...+|+|+.+++||+|+.+.++...+..|++.+.+++.++|+|+||||......+.......+ ..+++.++|.||
T Consensus 1 ~e~~~~~T~d~~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~~~~~~~~~~~VP 80 (110)
T PF07522_consen 1 PELSSLFTTDPSETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSLQSRGNVRIYRVP 80 (110)
T ss_pred CchhceeecCCCCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCccccccccccccCCCceEEEEe
Confidence 466788999999999999999999999999999999999999999999999987765444332222 245678999999
Q ss_pred cccCCCHHHHHHHHhC
Q 014242 413 YSEHSSFTELREFVQV 428 (428)
Q Consensus 413 ~S~Hs~~~eL~~fv~~ 428 (428)
||+|||+.||++||++
T Consensus 81 YSeHSSf~EL~~Fv~~ 96 (110)
T PF07522_consen 81 YSEHSSFSELKEFVSF 96 (110)
T ss_pred cccCCCHHHHHHHHHh
Confidence 9999999999999975
No 22
>PRK00055 ribonuclease Z; Reviewed
Probab=99.57 E-value=3.5e-15 Score=144.34 Aligned_cols=163 Identities=17% Similarity=0.097 Sum_probs=96.6
Q ss_pred ccccCCCCCceeeeccCCCCccc--cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc-
Q 014242 88 EANCLFSPPMKKLKASNGKSTAT--HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW- 164 (428)
Q Consensus 88 ~~~~g~~~~~~~l~~g~~~~~~~--~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~- 164 (428)
+.++|+|+++.....++ ++.+ .++..+++|||...........+ ...+|++|||||.|.||++||+.+.
T Consensus 4 i~~LGsg~~~~~~~r~~--~~~li~~~~~~iLiD~G~g~~~~l~~~~~------~~~~i~~i~lTH~H~DHi~Gl~~l~~ 75 (270)
T PRK00055 4 LTFLGTGSGVPTPTRNV--SSILLRLGGELFLFDCGEGTQRQLLKTGI------KPRKIDKIFITHLHGDHIFGLPGLLS 75 (270)
T ss_pred EEEEecCCCCCcCCCCC--CEEEEEECCcEEEEECCHHHHHHHHHcCC------CHHHCCEEEEeCCCchhhCcHHHHHH
Confidence 45667777664433222 2333 46788999999753211000111 2367999999999999999998521
Q ss_pred --------CCCcEEeCHHHHHHHHHhhccCCC------------ceE-------EcCCCcEE-EE-CCEEEEEEEccc--
Q 014242 165 --------SHGPIYCSPLTARLVRMCLLVNPS------------YIH-------PLELNTEH-VI-DGVKVTLLEANH-- 213 (428)
Q Consensus 165 --------~~~~Iy~s~~t~~~l~~~~~~~~~------------~i~-------~v~~~~~~-~i-~~~~V~~~~a~H-- 213 (428)
...+||+++.+.+.+......... .+. .++.+..+ .+ .+.++.+ .+|
T Consensus 76 ~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~ 153 (270)
T PRK00055 76 TRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRGEDVTL--EDGRI 153 (270)
T ss_pred HhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCCCeEEe--CCCcE
Confidence 345799999887766543221000 000 01111110 01 1222222 233
Q ss_pred CCCceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEEEEecCCCCC
Q 014242 214 CPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNP 265 (428)
Q Consensus 214 ~~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~Ty~~~ 265 (428)
+..+.+|.++. +|++++|+||+++.+... .. ..++|+||+||||...
T Consensus 154 i~~~~~~~~~~-~g~~~~y~~Dt~~~~~~~--~~--~~~~d~li~E~~~~~~ 200 (270)
T PRK00055 154 INPADVLGPPR-KGRKVAYCGDTRPCEALV--EL--AKGADLLVHEATFGDE 200 (270)
T ss_pred EeHHHeeccCC-CCcEEEEeCCCCCcHHHH--HH--hCCCCEEEEeccCCcc
Confidence 33678888886 677999999999875432 22 3689999999999865
No 23
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.57 E-value=1.4e-13 Score=130.32 Aligned_cols=137 Identities=20% Similarity=0.161 Sum_probs=98.5
Q ss_pred cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCcccc--cCCCcEEeCHHHHHHHHHhhccCCC
Q 014242 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR--WSHGPIYCSPLTARLVRMCLLVNPS 188 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~--~~~~~Iy~s~~t~~~l~~~~~~~~~ 188 (428)
.++..+++||+.... +... +.... .++|+|||||.|.||++++... ....++|++..+.+.+... +. .
T Consensus 15 ~~~~~iLiDP~~~~~-~~~~-----~~~~~-~~id~vliTH~H~DH~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~--~ 84 (228)
T PRK00685 15 TGGKKILIDPFITGN-PLAD-----LKPED-VKVDYILLTHGHGDHLGDTVEIAKRTGATVIANAELANYLSEK-GV--E 84 (228)
T ss_pred ECCEEEEECCCCCCC-CCCC-----CChhc-CcccEEEeCCCCccccccHHHHHHhCCCEEEEeHHHHHHHHhc-CC--C
Confidence 456688999866321 1111 11112 2799999999999999988753 2467899998877765432 22 2
Q ss_pred ceEEcCCCcEEEECCEEEEEEEcccCCC------------ceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEE
Q 014242 189 YIHPLELNTEHVIDGVKVTLLEANHCPG------------AALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVL 256 (428)
Q Consensus 189 ~i~~v~~~~~~~i~~~~V~~~~a~H~~G------------s~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~L 256 (428)
.+..++.++++++++++|+++++.|... ..+|+++. ++++++|+||+.+.++...... ..++|++
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~-~~~~i~~~GDt~~~~~~~~~~~--~~~~D~~ 161 (228)
T PRK00685 85 KTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITF-EGKTIYHAGDTGLFSDMKLIGE--LHKPDVA 161 (228)
T ss_pred ceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEE-CCeEEEEecCccchhHHHHHHH--hhCCCEE
Confidence 5678889999999999999999999443 58999998 5679999999998765432221 2478999
Q ss_pred EEec
Q 014242 257 YLDT 260 (428)
Q Consensus 257 i~E~ 260 (428)
++..
T Consensus 162 ~~~~ 165 (228)
T PRK00685 162 LLPI 165 (228)
T ss_pred EEec
Confidence 9865
No 24
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.51 E-value=9.7e-13 Score=132.62 Aligned_cols=269 Identities=13% Similarity=0.135 Sum_probs=185.8
Q ss_pred CCCccEEEeCCCchhhhCCccc----ccCCCcEEeCHHHHHHHHHhhcc--------C----------------------
Q 014242 141 IKGCSAYFLTHFHYDHYGGLGK----RWSHGPIYCSPLTARLVRMCLLV--------N---------------------- 186 (428)
Q Consensus 141 i~~id~v~iTH~H~DHiggL~~----~~~~~~Iy~s~~t~~~l~~~~~~--------~---------------------- 186 (428)
...||+|+||..|. +-|||. .++.++||+++.|+++-+.+++. +
T Consensus 94 ~stiDvILISNy~~--mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk 171 (653)
T KOG1138|consen 94 ASTIDVILISNYMG--MLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLK 171 (653)
T ss_pred ccceeEEEEcchhh--hcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCch
Confidence 36899999999998 899996 35678999999999865543320 0
Q ss_pred --------------------CCceEEcCCCcEEEE-CCEEEEEEEcccCCCceEEEEEeeCCcEEEEeCCCCCCc---cc
Q 014242 187 --------------------PSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASR---LM 242 (428)
Q Consensus 187 --------------------~~~i~~v~~~~~~~i-~~~~V~~~~a~H~~Gs~~~~~~~~~g~~ilytGD~~~~~---~~ 242 (428)
-.+++.+.+.+.+.+ +.+.||++.+||+.||+.+++.++++ ++.|..+..+.. ..
T Consensus 172 ~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~ne-k~sYvS~Ss~ltth~r~ 250 (653)
T KOG1138|consen 172 KAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNE-KLSYVSGSSFLTTHPRP 250 (653)
T ss_pred hhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCCc-ceEEEecCcccccCCcc
Confidence 024667788888887 57999999999999999999999776 788888887643 22
Q ss_pred cccccccCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccHHHHHHHHHHH-------c
Q 014242 243 QSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKA-------L 315 (428)
Q Consensus 243 ~~~~~l~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGreqell~i~~~-------~ 315 (428)
+... ..+..|+||+.+--.-+. .+..+..-+++..|...++++|. |++|+|..|-..++++.+.. .
T Consensus 251 md~a--~Lk~~Dvli~T~lsql~t---anpd~m~gelc~nvt~~~rn~Gs--vL~PcyPsGviydl~Ecls~~idna~ls 323 (653)
T KOG1138|consen 251 MDQA--GLKETDVLIYTGLSQLPT---ANPDEMGGELCKNVTLTGRNHGS--VLLPCYPSGVIYDLIECLSQDIDNAGLS 323 (653)
T ss_pred cccc--ccccccEEEEeccccccc---CCccchhhhHHHHHHHHhhcCCc--eeeeccCCchhhHHHHHhhhcccccCCc
Confidence 2222 237899999987543332 23445566777778788888887 99999999999998885543 1
Q ss_pred CCeEEEechH-------HHHHHhc------------CCCcc----------------cCCceecCCCceEEEeecCCCCh
Q 014242 316 GVKIYANASR-------RRVLQSF------------DWPEL----------------SGNLCTQGNDTLLHVLPMSSLKF 360 (428)
Q Consensus 316 ~~~I~v~~~~-------~~i~~~~------------~~~~~----------------~~~~~~d~~~~~I~v~~~~~l~~ 360 (428)
+.|+|+-+.. ..|+... .-|+. ...|+.+-+.|||+++++.+++.
T Consensus 324 ~~P~yfISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~SlRf 403 (653)
T KOG1138|consen 324 DTPIYFISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPSLRF 403 (653)
T ss_pred CCcceEecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceeehHHHHHHHhhhcccceeEecCCcchhh
Confidence 5799986532 2233221 11111 01134467899999999999999
Q ss_pred hhHHHHHhhhcCCCCcEEEEeeccccccCCCCCcccccCCCcCCCEEEEEEccccCCCHHHHHHHH
Q 014242 361 ETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFV 426 (428)
Q Consensus 361 g~~~~~~~~~~~~~~~~i~~~ptG~~~~~t~g~~l~~~~~~~~~~~~i~~i~~S~Hs~~~eL~~fv 426 (428)
|.+.++++-|..+++|+++|.-..+.+.... .|...-.+.+...|+=.--++..|-+.+
T Consensus 404 gdv~h~~e~~g~sp~NsvI~tdpD~~~~~vl-------~PfrpLamK~i~cpidtrlnfqql~kLl 462 (653)
T KOG1138|consen 404 GDVVHFLECWGLSPKNSVIFTDPDFSYLLVL-------APFRPLAMKIIYCPIDTRLNFQQLPKLL 462 (653)
T ss_pred hHHHHHHHHhcCCCCCceEEeCCCCchhhhh-------cCCccccceeEeccccccccHHHHHHHH
Confidence 9999999999999999999954334443221 1211123344455555555555555444
No 25
>PRK04286 hypothetical protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=136.44 Aligned_cols=221 Identities=11% Similarity=0.107 Sum_probs=123.7
Q ss_pred ceeeeccCCC---Cccc--cCCceEEEcCCCCCC-----CCCcceEe----cCCC--cCCCCCccEEEeCCCchhhhCCc
Q 014242 97 MKKLKASNGK---STAT--HLKKIVDRSCPFYKK-----IPGTPFTV----DAFR--YGSIKGCSAYFLTHFHYDHYGGL 160 (428)
Q Consensus 97 ~~~l~~g~~~---~~~~--~~~~~~liDcG~~~~-----~~~~~~~i----D~f~--~~~i~~id~v~iTH~H~DHiggL 160 (428)
+..+++|+.+ ++.+ .++..+|||+|.... .+..+... +... ...+.+||+|||||.|.||++++
T Consensus 3 ~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~ 82 (298)
T PRK04286 3 IIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPF 82 (298)
T ss_pred EEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCc
Confidence 3456666654 4444 678899999996421 11111100 0000 02346899999999999999888
Q ss_pred cccc-------CCCcEEeCHHHHHH-----HH--Hh-----h-c-cC-CCceEEcCCCcEEEECCEEEEEE-EcccC-C-
Q 014242 161 GKRW-------SHGPIYCSPLTARL-----VR--MC-----L-L-VN-PSYIHPLELNTEHVIDGVKVTLL-EANHC-P- 215 (428)
Q Consensus 161 ~~~~-------~~~~Iy~s~~t~~~-----l~--~~-----~-~-~~-~~~i~~v~~~~~~~i~~~~V~~~-~a~H~-~- 215 (428)
.... ...+||.+..+... +. .. + . +. ......+..++.+.+++++|++. +..|. +
T Consensus 83 ~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~ 162 (298)
T PRK04286 83 YEDPYELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADG 162 (298)
T ss_pred cccccccccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCC
Confidence 7531 12456655433210 00 00 0 0 00 11234567889999999999977 77894 3
Q ss_pred CceEE----EEEeeCCcEEEEeCCCC-CCccccccccccCCCccEEEEecC--CCCCCC-CCCChHHHHHHHHHHHHHHH
Q 014242 216 GAALI----HFRLQDGQCYLHTGDFR-ASRLMQSYPLLVNHRVNVLYLDTT--YCNPKY-KFPSKEDVLNYVVRLTKNCL 287 (428)
Q Consensus 216 Gs~~~----~~~~~~g~~ilytGD~~-~~~~~~~~~~l~~~~~D~Li~E~T--y~~~~~-~~ps~~~~~~~l~~~i~~~l 287 (428)
.+++| .++. +|++++|+||+. ...+.. ...+...++|+|++++. |..... .+...+.+.+ .+.+.+
T Consensus 163 ~~~Gy~i~~ri~~-gg~~~~~~gDt~~~~~~~~-~~~l~~~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~----~~~~l~ 236 (298)
T PRK04286 163 SKLGYVIMVRISD-GDESFVFASDVQGPLNDEA-VEFILEKKPDVVIIGGPPTYLLGRRLSEEDLEKGIE----NLEEIV 236 (298)
T ss_pred CccceEEEEEEEe-CCEEEEEECCCCCCCCHHH-HHHHhcCCCCEEEeCCcchhhhhhhhccccHHHHHH----HHHHHH
Confidence 34444 4565 778999999999 322222 12233359999999983 332111 1223333333 333444
Q ss_pred HhCCCeEEEEcccccc--H---HHHHHHHHHHcCCeEEEec
Q 014242 288 KKQPKTLVVVGAYSIG--K---ESVFLAISKALGVKIYANA 323 (428)
Q Consensus 288 ~~g~~~lvli~~~slG--r---eqell~i~~~~~~~I~v~~ 323 (428)
+.+.+.+++..+-+.- . .+++.+.++..+++++...
T Consensus 237 ~~~~k~liLtHHls~~~n~~~~~~~l~~~~~~~~~~~~~~~ 277 (298)
T PRK04286 237 KNTPETLILDHHLLRDKNYREKLKELYERAEDRGVRVLTAA 277 (298)
T ss_pred hcCCCEEEEeccccccCCcHHHHHHHHHHHhhcCceEEeHH
Confidence 4466654544233321 1 2455666788899998865
No 26
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.47 E-value=4.6e-13 Score=129.29 Aligned_cols=179 Identities=13% Similarity=0.002 Sum_probs=112.0
Q ss_pred cCCceEEEc-CCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccc-------c---cCCCcEEeCHHHHHHH
Q 014242 111 HLKKIVDRS-CPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK-------R---WSHGPIYCSPLTARLV 179 (428)
Q Consensus 111 ~~~~~~liD-cG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~-------~---~~~~~Iy~s~~t~~~l 179 (428)
-....++.| .|..... ...+.+..++.+||||.|.||++||+. . .....||.|+.+.+..
T Consensus 16 ~~~~~ilfD~ag~g~~~---------~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~v 86 (277)
T TIGR02650 16 YSPEEIIFDAAEEGSST---------LGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAE 86 (277)
T ss_pred ECchhheehhhcccchh---------HHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHH
Confidence 567788888 8764421 111134678999999999999999962 1 1234699999877766
Q ss_pred HHh---hcc------CCCceEEcCCCcEEEEC-C---EEEEEEEcccCC---CceEEEEEe-------------------
Q 014242 180 RMC---LLV------NPSYIHPLELNTEHVID-G---VKVTLLEANHCP---GAALIHFRL------------------- 224 (428)
Q Consensus 180 ~~~---~~~------~~~~i~~v~~~~~~~i~-~---~~V~~~~a~H~~---Gs~~~~~~~------------------- 224 (428)
... +.. ....+.+++.++.+... + ..|+++++.|.. -|.+|.|..
T Consensus 87 e~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~ 166 (277)
T TIGR02650 87 EETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARL 166 (277)
T ss_pred HHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHH
Confidence 522 211 12234456666767666 3 899999999964 466766641
Q ss_pred ------------eCCcEEEEeCCCCCCccccccccccCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC
Q 014242 225 ------------QDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPK 292 (428)
Q Consensus 225 ------------~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~ 292 (428)
..+++|+||||++..+. +. ..++|+||+||||.+........+....++.+..++ .+.+
T Consensus 167 l~~~gg~~~t~e~~~~~vvysGDT~~~~~----~~--a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~---a~vk 237 (277)
T TIGR02650 167 LKEEGGDDFTREEHHKILLIIGDDLAADD----EE--EEGGEELIHECCFFDDADDRRKKHAAADDEMEESKK---AAGK 237 (277)
T ss_pred HHHhCCccccccccCcEEEEeCCCCCCCh----HH--hcCCCEEEEecccccccccccCCCCCHHHHHHHHHH---cCCC
Confidence 01268999999998753 22 479999999999987643111112333444444332 2444
Q ss_pred eEEEEccccccHHHHH
Q 014242 293 TLVVVGAYSIGKESVF 308 (428)
Q Consensus 293 ~lvli~~~slGreqel 308 (428)
. +++.+|+.-+.+++
T Consensus 238 ~-LiLtH~Ssry~~~~ 252 (277)
T TIGR02650 238 K-KIILHHISRRIIRI 252 (277)
T ss_pred E-EEEEeecccccHHH
Confidence 3 44555665554333
No 27
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.39 E-value=3.1e-12 Score=125.12 Aligned_cols=190 Identities=18% Similarity=0.175 Sum_probs=135.6
Q ss_pred cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc---CCCcEEeCHHHHHHHHHhhccCC
Q 014242 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW---SHGPIYCSPLTARLVRMCLLVNP 187 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~---~~~~Iy~s~~t~~~l~~~~~~~~ 187 (428)
.+....++|.|.. .+....++.++...+.+||.+++||.|.||+||++... .-..+|+...........+....
T Consensus 61 ~~~~~~l~dtg~~---~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~~~~~~~~ 137 (293)
T COG2333 61 SEGKTILYDTGNS---MGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTSTFVLRDAG 137 (293)
T ss_pred eCCceEEeecCcc---cCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCccchhhhhhcC
Confidence 3444778888875 34556788888889999999999999999999999643 22345554433221111122223
Q ss_pred CceEEcCCCcEEEECCEEEEEEEcc-c-----CCCceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEEEEecC
Q 014242 188 SYIHPLELNTEHVIDGVKVTLLEAN-H-----CPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTT 261 (428)
Q Consensus 188 ~~i~~v~~~~~~~i~~~~V~~~~a~-H-----~~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~T 261 (428)
........|+.+.++++.++++... . .-.|++++++. ++.++++|||.....+..........++|+|
T Consensus 138 ~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~-g~~s~LlTGD~e~~~E~~l~~~~~~l~~dVL----- 211 (293)
T COG2333 138 IPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTF-GGNSFLLTGDLEEKGEKLLKKYGPDLRADVL----- 211 (293)
T ss_pred CceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEe-CCeeEEEecCCCchhHHHHHhhCCCccceEE-----
Confidence 4566778899999999999988753 3 23589999998 6779999999988665332222223568888
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccH-------HHHHHHHHHHcCCeEEEe
Q 014242 262 YCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK-------ESVFLAISKALGVKIYAN 322 (428)
Q Consensus 262 y~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGr-------eqell~i~~~~~~~I~v~ 322 (428)
+..+|.++......|++.++ |+ ++.+|.|+ .+++++.+++.++++|-.
T Consensus 212 ---kV~HHGS~tSss~~Fl~~v~------Pk----~AliS~G~~N~yghPh~~Vl~rl~~~~~~v~rT 266 (293)
T COG2333 212 ---KVGHHGSKTSSSLAFLEAVK------PK----VALISSGRNNRYGHPHQEVLERLQKRGIKVYRT 266 (293)
T ss_pred ---EeccCCccccCcHHHHHhcC------Cc----EEEEEeeccCCCCCCcHHHHHHHHhcCCeEEec
Confidence 55678898888889998885 76 23345677 489999999999999854
No 28
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.30 E-value=5.2e-12 Score=113.88 Aligned_cols=124 Identities=23% Similarity=0.233 Sum_probs=90.1
Q ss_pred cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc--CCCcEEeCHHHHHHHHHhh-----
Q 014242 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW--SHGPIYCSPLTARLVRMCL----- 183 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~--~~~~Iy~s~~t~~~l~~~~----- 183 (428)
.++..+++|||...... .+..+......++++||+||.|.||++|++.+. ++.+||+++.+.+.+....
T Consensus 13 ~~~~~iliD~g~~~~~~----~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (183)
T smart00849 13 GDGGAILIDTGPGEAED----LLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAPGAPVYAPEGTAELLKDLLKLGGA 88 (183)
T ss_pred eCCceEEEeCCCChhHH----HHHHHHHcCchhhcEEEecccCcchhccHHHHHhCCCCcEEEchhhhHHHhccchhccc
Confidence 45678999999543210 101111112468999999999999999998532 5678999998887765321
Q ss_pred ----ccCCCceEEcCCCcEEEECCEEEEEEEc-ccCCCceEEEEEeeCCcEEEEeCCCCCCcc
Q 014242 184 ----LVNPSYIHPLELNTEHVIDGVKVTLLEA-NHCPGAALIHFRLQDGQCYLHTGDFRASRL 241 (428)
Q Consensus 184 ----~~~~~~i~~v~~~~~~~i~~~~V~~~~a-~H~~Gs~~~~~~~~~g~~ilytGD~~~~~~ 241 (428)
......+..+..++++.+++.+++++++ +|+++++++.++. ++++|+||+.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~---~~vl~~gD~~~~~~ 148 (183)
T smart00849 89 LGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPE---GKILFTGDLLFSGG 148 (183)
T ss_pred cCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECC---CCEEEECCeeeccC
Confidence 1122356778889999999888888888 8999999988763 58999999998654
No 29
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.29 E-value=7.1e-12 Score=128.63 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=102.2
Q ss_pred eeeccccCCccc-cccCCCCCceeeeccCCCCccc-cCCceEEEcCCCCCCCCCcceEecCCCc-CCCCCccEEEeCCCc
Q 014242 77 DMWGLKSNSESE-ANCLFSPPMKKLKASNGKSTAT-HLKKIVDRSCPFYKKIPGTPFTVDAFRY-GSIKGCSAYFLTHFH 153 (428)
Q Consensus 77 ~~w~~~~~~~~~-~~~g~~~~~~~l~~g~~~~~~~-~~~~~~liDcG~~~~~~~~~~~iD~f~~-~~i~~id~v~iTH~H 153 (428)
.++|+|...+.. .|.+.. +. +-.|+..|+.+ .++..++||||...... -.++.+.. ....+|++|++||.|
T Consensus 6 ~v~~vg~~d~~~~~f~~~~--~~-~~~g~~~NsyLI~~~~~vLIDtg~~~~~~---~~~~~l~~~~~~~~Id~IilTH~H 79 (394)
T PRK11921 6 NVTWVGKIDWELRKFHGEE--YS-THRGSSYNSYLIKDEKTVLIDTVWQPFAK---EFVENLKKEIDLDKIDYIVANHGE 79 (394)
T ss_pred CeEEEeeecCCcceecceE--ee-cCCceEEEEEEEeCCCEEEEeCCCCCcHH---HHHHHHHhhcCcccCCEEEeCCCC
Confidence 378888887654 333321 00 22344444444 34568999999743111 11111111 123579999999999
Q ss_pred hhhhCCcccc---cCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCcEEEECCEEEEEEEc-c-cCCCceEEEEEeeCCc
Q 014242 154 YDHYGGLGKR---WSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEA-N-HCPGAALIHFRLQDGQ 228 (428)
Q Consensus 154 ~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i~~~~V~~~~a-~-H~~Gs~~~~~~~~~g~ 228 (428)
.||+||++.+ .+..+||+++.+.+.+...+.. ...++.++.++++.+++.+++++++ + |.||+++++++. .
T Consensus 80 ~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~~~~-~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~~---~ 155 (394)
T PRK11921 80 IDHSGALPELMKEIPDTPIYCTKNGAKSLKGHYHQ-DWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLTG---D 155 (394)
T ss_pred CchhhHHHHHHHHCCCCEEEECHHHHHHHHHHhCC-CCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEcC---C
Confidence 9999999953 3567899999988776544321 2346778899999999999999987 4 999999998863 3
Q ss_pred EEEEeCCC
Q 014242 229 CYLHTGDF 236 (428)
Q Consensus 229 ~ilytGD~ 236 (428)
+++||||+
T Consensus 156 ~vLFsgD~ 163 (394)
T PRK11921 156 NILFSNDA 163 (394)
T ss_pred CEEEecCc
Confidence 69999997
No 30
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.27 E-value=5.5e-13 Score=140.30 Aligned_cols=173 Identities=12% Similarity=0.064 Sum_probs=106.5
Q ss_pred ccccCCCCCceeeeccCCCCcccc-CCceEEEcCCCCCCCC-CcceEecCCCcCCCCCccEEEeCCCchhhhCCcccc--
Q 014242 88 EANCLFSPPMKKLKASNGKSTATH-LKKIVDRSCPFYKKIP-GTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR-- 163 (428)
Q Consensus 88 ~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~liDcG~~~~~~-~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~-- 163 (428)
+=++|+|++.-+.+.+=.+.-.-. ....+|+|||...... -..++++... ..+.++.+|+|||.|+||.-||...
T Consensus 445 Ii~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~-~~lr~LraI~ISHlHADHh~Gl~~vL~ 523 (746)
T KOG2121|consen 445 IIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVD-TALRKLRAIFISHLHADHHLGLISVLQ 523 (746)
T ss_pred EEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchH-HHHHhHHHHHHHhhcccccccHHHHHH
Confidence 346777776665544321111112 4445999999966421 1123322211 1347899999999999999999841
Q ss_pred -c-------CCCc--EEeCHHHHHHHHHhhccC---CC-------ceEEcCCCcE-----------E-EECCEEEEEEEc
Q 014242 164 -W-------SHGP--IYCSPLTARLVRMCLLVN---PS-------YIHPLELNTE-----------H-VIDGVKVTLLEA 211 (428)
Q Consensus 164 -~-------~~~~--Iy~s~~t~~~l~~~~~~~---~~-------~i~~v~~~~~-----------~-~i~~~~V~~~~a 211 (428)
| ..-+ |.++....+.+....... .. ....+....+ + +.+...|...++
T Consensus 524 ~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l~~~~l~~i~tc~v 603 (746)
T KOG2121|consen 524 ARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLLRELGLESIQTCPV 603 (746)
T ss_pred HHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHHHhcCceeEEecCc
Confidence 1 1123 444555555554332111 00 0001111111 1 136688999999
Q ss_pred ccCCCceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEEEEecCCCCC
Q 014242 212 NHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNP 265 (428)
Q Consensus 212 ~H~~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~Ty~~~ 265 (428)
-||+.|++..+....|.+|+|+||++.++..... ..++|+||+|+|+.+.
T Consensus 604 iHCp~syg~~i~~~~~~Ki~YSGDTrP~~~~v~~----g~datlLIHEAT~ED~ 653 (746)
T KOG2121|consen 604 IHCPQSYGCSITHGSGWKIVYSGDTRPCEDLVKA----GKDATLLIHEATLEDD 653 (746)
T ss_pred EecChhhceeEecccceEEEEcCCCCCchhHhhh----ccCCceEEeehhhchh
Confidence 9999999999998666799999999998776532 4899999999999874
No 31
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.24 E-value=3.1e-11 Score=131.66 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=127.2
Q ss_pred cCCceEEEcCCCCCC--CCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc---CCCcEEeCHHHHHHHHHhhcc
Q 014242 111 HLKKIVDRSCPFYKK--IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW---SHGPIYCSPLTARLVRMCLLV 185 (428)
Q Consensus 111 ~~~~~~liDcG~~~~--~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~---~~~~Iy~s~~t~~~l~~~~~~ 185 (428)
.++..+++|||..-. ..+....++.++...++ ||++++||.|.||+||++... +...++.+.... .
T Consensus 457 ~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~~~~--------~ 527 (662)
T TIGR00361 457 ANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKHHPVKRLVIPKGFV--------E 527 (662)
T ss_pred ECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHhCCccEEEeccchh--------h
Confidence 455789999996321 12334456666666777 999999999999999999632 334677654311 1
Q ss_pred CCCceEEcCCCcEEEECCEEEEEEEccc------CCCceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEEEEe
Q 014242 186 NPSYIHPLELNTEHVIDGVKVTLLEANH------CPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLD 259 (428)
Q Consensus 186 ~~~~i~~v~~~~~~~i~~~~V~~~~a~H------~~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E 259 (428)
.......+..|+.+++++++++++.... ...|+.+.++. +++++++|||.....+..........++|+|
T Consensus 528 ~~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~-~~~~~L~tGD~~~~~E~~l~~~~~~l~~dvL--- 603 (662)
T TIGR00361 528 EGVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDD-GGNSWLLTGDLEAEGEQEVMRVFPNIKADVL--- 603 (662)
T ss_pred CCCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEE-CCeeEEEecCCCHHHHHHHHhcccCcCccEE---
Confidence 1234566888999999999999996532 24578888887 6789999999988654332221123567888
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccH-------HHHHHHHHHHcCCeEEEe
Q 014242 260 TTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK-------ESVFLAISKALGVKIYAN 322 (428)
Q Consensus 260 ~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGr-------eqell~i~~~~~~~I~v~ 322 (428)
+..||.++....+.+++.++ |+ .++| |.|+ .+++++.+++.|+++|-.
T Consensus 604 -----k~~HHGS~~Sss~~fl~~v~------P~-~aii---S~g~~N~yghP~~~vl~rl~~~g~~~~~T 658 (662)
T TIGR00361 604 -----QVGHHGSKTSTSEELIQQVQ------PK-VAII---SAGRNNRWHHPHQKVLQRLQRHSIRVLRT 658 (662)
T ss_pred -----EeCCCCCCCCChHHHHHhcC------CC-EEEE---ECCCCCCCCCChHHHHHHHHHCCCeEEec
Confidence 44577887777778887664 66 3444 3343 378999999999998854
No 32
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.22 E-value=2.2e-11 Score=127.72 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=103.1
Q ss_pred eeeccccCCccccccCCCCCceeeeccCCCCccc-cCCceEEEcCCCCCCCCCcceEecCCC-cCCCCCccEEEeCCCch
Q 014242 77 DMWGLKSNSESEANCLFSPPMKKLKASNGKSTAT-HLKKIVDRSCPFYKKIPGTPFTVDAFR-YGSIKGCSAYFLTHFHY 154 (428)
Q Consensus 77 ~~w~~~~~~~~~~~~g~~~~~~~l~~g~~~~~~~-~~~~~~liDcG~~~~~~~~~~~iD~f~-~~~i~~id~v~iTH~H~ 154 (428)
.++|+|-..+..+...+ ..+. +-.|+..|+.+ .++..++||+|....... .+..+. .....+|++|++||.|.
T Consensus 8 ~vy~vg~~d~~~~~F~~-~~~~-~~~G~t~NsYLI~~~~~vLIDtg~~~~~~~---~l~~l~~~~~~~~Id~IilTH~H~ 82 (479)
T PRK05452 8 NIHWVGQRDWEVRDFHG-TEYK-TLRGSSYNSYLIREEKNVLIDTVDHKFSRE---FVQNLRNEIDLADIDYIVINHAEE 82 (479)
T ss_pred CeEEEeeecCCcccccc-ceee-cCCCcEEEEEEEECCCEEEEeCCCcccHHH---HHHHHHhcCCHhhCCEEEeCCCCc
Confidence 47888887766533332 0011 23555555554 356789999995321110 011111 01235799999999999
Q ss_pred hhhCCccccc---CCCcEEeCHHHHHHHHHhhccCCCceEEcCCCcEEEEC-CEEEEEEEc--ccCCCceEEEEEeeCCc
Q 014242 155 DHYGGLGKRW---SHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVID-GVKVTLLEA--NHCPGAALIHFRLQDGQ 228 (428)
Q Consensus 155 DHiggL~~~~---~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i~-~~~V~~~~a--~H~~Gs~~~~~~~~~g~ 228 (428)
||+||++.+. +..+||+++.+...+......+...++.++.|+.+.++ +.+++++++ +|.||+++++++. .
T Consensus 83 DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~---~ 159 (479)
T PRK05452 83 DHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTG---D 159 (479)
T ss_pred chhchHHHHHHHCCCCEEEECHHHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEcC---C
Confidence 9999998642 56899999998877655433333457889999999998 578888988 4999999999873 3
Q ss_pred EEEEeCCC
Q 014242 229 CYLHTGDF 236 (428)
Q Consensus 229 ~ilytGD~ 236 (428)
++|||||.
T Consensus 160 ~vLFsgD~ 167 (479)
T PRK05452 160 AVLFSNDA 167 (479)
T ss_pred CEEEeccc
Confidence 69999996
No 33
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.11 E-value=1e-09 Score=106.24 Aligned_cols=165 Identities=17% Similarity=0.075 Sum_probs=112.4
Q ss_pred ccceeeeeccccCCccccccCCCCCceeeeccCCCCccccCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCC
Q 014242 72 QANLFDMWGLKSNSESEANCLFSPPMKKLKASNGKSTATHLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTH 151 (428)
Q Consensus 72 ~~~~~~~w~~~~~~~~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH 151 (428)
+...+++||+|+.+.++++-| .+++.+.+.+........+. ..+.+ .+..+|+|+|||
T Consensus 3 ~~~~m~itwlGha~~lie~~~-~~iliDP~~~~~~~~~~~~~------------------~~~~~---~~~~~D~ilitH 60 (258)
T COG2220 3 SAEDMKITWLGHAAFLIETGG-KRILIDPVLSGAPSPSNFPG------------------GLFED---LLPPIDYILITH 60 (258)
T ss_pred CCcCceEEEecceEEEEEECC-EEEEECcccCCCCCcccccC------------------cCChh---hcCCCCEEEEeC
Confidence 567789999999999988655 55666666554222221111 01111 236799999999
Q ss_pred CchhhhCCccc--cc-CCCcEEeCHHHHHHHHHhhccCCCceEEcCCCcEEEECCEEEEEEEcccC-----C--------
Q 014242 152 FHYDHYGGLGK--RW-SHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHC-----P-------- 215 (428)
Q Consensus 152 ~H~DHiggL~~--~~-~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i~~~~V~~~~a~H~-----~-------- 215 (428)
.|.||+..-.. .. ...+++..+.....+....+.....+..+..++.+++++++|+++++.|. +
T Consensus 61 ~H~DHl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~ 140 (258)
T COG2220 61 DHYDHLDDETLIALRTNKAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTG 140 (258)
T ss_pred CCccccCHHHHHHHhcCCCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccC
Confidence 99999975432 22 23566666666544444556666778899999999999999999998883 2
Q ss_pred CceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEEEEecCC
Q 014242 216 GAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTY 262 (428)
Q Consensus 216 Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~Ty 262 (428)
+.++|+++. .|.+++|.||+.+ ... ........+|++++..--
T Consensus 141 ~~~~~vi~~-~g~~iyh~GDt~~-~~~--~~~~~~~~~DvallPig~ 183 (258)
T COG2220 141 LWVGYVIET-PGGRVYHAGDTGY-LFL--IIEELDGPVDVALLPIGG 183 (258)
T ss_pred CceEEEEEe-CCceEEeccCccH-HHH--hhhhhcCCccEEEeccCC
Confidence 257799998 5679999999998 221 111123458999998754
No 34
>PRK11539 ComEC family competence protein; Provisional
Probab=99.10 E-value=2.3e-10 Score=126.50 Aligned_cols=180 Identities=14% Similarity=0.104 Sum_probs=122.9
Q ss_pred cCCceEEEcCCCCCC--CCCcceEecCCCcCCCCCccEEEeCCCchhhhCCcccc---cCCCcEEeCHHHHHHHHHhhcc
Q 014242 111 HLKKIVDRSCPFYKK--IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCLLV 185 (428)
Q Consensus 111 ~~~~~~liDcG~~~~--~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~~~ 185 (428)
.++..+++|+|..-. ..+....++..+...+ ++|++++||.|.||+||++.. .+...||.+...
T Consensus 518 ~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~~~---------- 586 (755)
T PRK11539 518 RNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLHAWPMAWIRSPLNW---------- 586 (755)
T ss_pred ECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHHhCCcceeeccCcc----------
Confidence 466789999997421 1123345566666677 599999999999999999964 234567765311
Q ss_pred CCCceEEcCCCcEEEECCEEEEEEEc-ccC-----CCceEEEEEeeCCcEEEEeCCCCCCccccccccc-cCCCccEEEE
Q 014242 186 NPSYIHPLELNTEHVIDGVKVTLLEA-NHC-----PGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLL-VNHRVNVLYL 258 (428)
Q Consensus 186 ~~~~i~~v~~~~~~~i~~~~V~~~~a-~H~-----~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l-~~~~~D~Li~ 258 (428)
....+...|+.+++++++++++.. .|. ..|+.+.++. ++.++++|||.....+....... ...++|+|
T Consensus 587 --~~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~-~~~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL-- 661 (755)
T PRK11539 587 --ANHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDD-GKHSILLTGDLEAQAEQKLLSRYWQQLAATLL-- 661 (755)
T ss_pred --cCcccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEE-CCEEEEEEeCCChHHHHHHHhcCccCcCCCEE--
Confidence 112334678889999999999865 342 4688999987 67899999999776543321111 12467888
Q ss_pred ecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccH-------HHHHHHHHHHcCCeEEEe
Q 014242 259 DTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK-------ESVFLAISKALGVKIYAN 322 (428)
Q Consensus 259 E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGr-------eqell~i~~~~~~~I~v~ 322 (428)
...||.++....+.+++.++ |+ .++| |.|+ .+++++.+++.|++++-.
T Consensus 662 ------~vpHHGS~tSss~~fl~~v~------P~-~aii---S~g~~NryghP~~~v~~rl~~~g~~~~~T 716 (755)
T PRK11539 662 ------QVPHHGSNTSSSLPFIRAVN------GK-VALA---SASRYNAWRLPSVKVKQRYQQQGYQWRDT 716 (755)
T ss_pred ------EeCCCCCCCCChHHHHHhcC------CC-EEEE---eCCCCCCCCCCCHHHHHHHHHcCCeEEEc
Confidence 44567887777788887774 76 3444 3354 368899999999888744
No 35
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.09 E-value=1.6e-10 Score=111.38 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=79.9
Q ss_pred CceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc--CCCcEEeCHHHHHHHHHhhccCCCce
Q 014242 113 KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW--SHGPIYCSPLTARLVRMCLLVNPSYI 190 (428)
Q Consensus 113 ~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~--~~~~Iy~s~~t~~~l~~~~~~~~~~i 190 (428)
+..++||+|.... .++.+.... .++++||+||.|.||++|+..+. ...+||++..+ . . +...
T Consensus 20 ~~~ilID~g~~~~------i~~~l~~~g-~~l~~Il~TH~H~DHigG~~~l~~~~~~~V~~~~~~------~--~-~~~~ 83 (248)
T TIGR03413 20 GQAAVVDPGEAEP------VLDALEARG-LTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEE------R--I-PGIT 83 (248)
T ss_pred CCEEEEcCCChHH------HHHHHHHcC-CeeeEEEeCCCCccccCCHHHHHHHCCCeEEecccc------c--C-CCCc
Confidence 4688999986321 112221112 35899999999999999998642 34789998754 1 1 1224
Q ss_pred EEcCCCcEEEECCEEEEEEEc-ccCCCceEEEEEeeCCcEEEEeCCCCCC
Q 014242 191 HPLELNTEHVIDGVKVTLLEA-NHCPGAALIHFRLQDGQCYLHTGDFRAS 239 (428)
Q Consensus 191 ~~v~~~~~~~i~~~~V~~~~a-~H~~Gs~~~~~~~~~g~~ilytGD~~~~ 239 (428)
+.+..++.+.+++.+|+++++ ||++|+++|+++. .+++||||+-+.
T Consensus 84 ~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~~---~~~lftGDtl~~ 130 (248)
T TIGR03413 84 HPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLPD---SPALFCGDTLFS 130 (248)
T ss_pred EEeCCCCEEEECCEEEEEEECCCCCcccEEEEECC---CCEEEEcCcccc
Confidence 678889999999999999997 8999999998873 369999999764
No 36
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.05 E-value=7e-10 Score=108.13 Aligned_cols=199 Identities=20% Similarity=0.123 Sum_probs=113.7
Q ss_pred CceeeeccCCCCcccc--C-----CceEEEcCCCCCCCCCcceEecCCCc---CC----CCCccEEEeCCCchhhhCCcc
Q 014242 96 PMKKLKASNGKSTATH--L-----KKIVDRSCPFYKKIPGTPFTVDAFRY---GS----IKGCSAYFLTHFHYDHYGGLG 161 (428)
Q Consensus 96 ~~~~l~~g~~~~~~~~--~-----~~~~liDcG~~~~~~~~~~~iD~f~~---~~----i~~id~v~iTH~H~DHiggL~ 161 (428)
.|+.+++|+.++.-.- . ...+.+|||.... .+.+|.-.. .. +..+|+||+||.|+||+.|++
T Consensus 5 ~f~~lgsG~~gg~p~~~~~~~~c~~~~~~v~~~~~~~----~~lid~g~~~~~~~~~~~~~~idai~~TH~H~DHi~Gl~ 80 (269)
T COG1235 5 RFTVLGSGSSGGVPVIGCDCRACGGNRLRVDCGVGVK----TLLIDAGPDLRDQGLRLGVSDLDAILLTHEHSDHIQGLD 80 (269)
T ss_pred EEEEEEEcCCCCceecCCCccccCCceEEEEEEecce----eEEEecChhHHhhhhcccccccCeEEEecccHHhhcChH
Confidence 3555666655444321 1 2557888888543 234443211 11 248999999999999999999
Q ss_pred cc--cCCCcEEeCHHHHHHHHHh--hc-cCCCceEEcCCCcEEEECCEEEEEEEcccC------------------CCce
Q 014242 162 KR--WSHGPIYCSPLTARLVRMC--LL-VNPSYIHPLELNTEHVIDGVKVTLLEANHC------------------PGAA 218 (428)
Q Consensus 162 ~~--~~~~~Iy~s~~t~~~l~~~--~~-~~~~~i~~v~~~~~~~i~~~~V~~~~a~H~------------------~Gs~ 218 (428)
.+ +...++++...+....... .+ .+.....+....+...+.+.+++++...|- ....
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hd~~~~~~~~~~~~~~~~~~~~~~ 160 (269)
T COG1235 81 DLRRAYTLPIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFSLPAIGGLEVTPFPVPHDAIEPVGFVIIRTGRKLHGGTDI 160 (269)
T ss_pred HHHHHhcCCcccccceecccchhhhhccchhhhcCCCCccccccccceeeecCCCCCccccCCCcccccCcccccccccc
Confidence 64 3456677766554433211 11 111122333455556667777777666661 1234
Q ss_pred EEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 014242 219 LIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVG 298 (428)
Q Consensus 219 ~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~ 298 (428)
+|..+... ..+.|++|+...++............++++.+.++..+ .+ .+.+...+++++.++.. +++ .+++.
T Consensus 161 g~~~~~~~-~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~-gh-~~~h~~~~~a~~~~~~~---~~~-rivLt 233 (269)
T COG1235 161 GYGLEWRI-GDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDP-GH-LSNHLSAEEALELIEKL---KPK-RLVLT 233 (269)
T ss_pred eeeeeeee-ccEEEccccccCcchhHHHHhcCCccceeeeecccccc-CC-CCCchhHHHHHHHHHhC---Ccc-eEEEE
Confidence 45544423 47889999998776543222335678889999998776 23 34455566666555432 233 35555
Q ss_pred cccccHH
Q 014242 299 AYSIGKE 305 (428)
Q Consensus 299 ~~slGre 305 (428)
+.+.-..
T Consensus 234 Hls~~~~ 240 (269)
T COG1235 234 HLSHKND 240 (269)
T ss_pred ecCCCCC
Confidence 5554333
No 37
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.96 E-value=1.2e-09 Score=105.96 Aligned_cols=111 Identities=22% Similarity=0.179 Sum_probs=78.2
Q ss_pred CceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc---CCCcEEeCHHHHHHHHHhhccCCCc
Q 014242 113 KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW---SHGPIYCSPLTARLVRMCLLVNPSY 189 (428)
Q Consensus 113 ~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~---~~~~Iy~s~~t~~~l~~~~~~~~~~ 189 (428)
+..++||.|.... .++...... .+|++||+||.|.||+||+..+. ...+||++.... .. ..
T Consensus 23 ~~~vlIDp~~~~~------il~~l~~~g-~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~--------~~-~~ 86 (258)
T PLN02469 23 KDAAVVDPVDPEK------VLQAAHEHG-AKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDN--------VK-GC 86 (258)
T ss_pred CeEEEECCCChHH------HHHHHHHcC-CcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhc--------CC-CC
Confidence 4688999874221 222222212 47999999999999999998642 357899876421 11 12
Q ss_pred eEEcCCCcEEEECC-EEEEEEEc-ccCCCceEEEEEee-CCcEEEEeCCCCCC
Q 014242 190 IHPLELNTEHVIDG-VKVTLLEA-NHCPGAALIHFRLQ-DGQCYLHTGDFRAS 239 (428)
Q Consensus 190 i~~v~~~~~~~i~~-~~V~~~~a-~H~~Gs~~~~~~~~-~g~~ilytGD~~~~ 239 (428)
.+.+..++.+.+++ +.++++.+ ||++|+++|++... ++..++||||+-+.
T Consensus 87 ~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~ 139 (258)
T PLN02469 87 THPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFI 139 (258)
T ss_pred CeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccC
Confidence 35678899999985 78999998 99999999998642 12359999999764
No 38
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.96 E-value=4.8e-09 Score=94.31 Aligned_cols=96 Identities=22% Similarity=0.246 Sum_probs=62.4
Q ss_pred CCccEEEeCCCchhhhCCcccccCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCcEEEECCEEEEEEEcccC-------
Q 014242 142 KGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHC------- 214 (428)
Q Consensus 142 ~~id~v~iTH~H~DHiggL~~~~~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i~~~~V~~~~a~H~------- 214 (428)
.++|+|+|||.|.||+..-.-. .+ ...+..+..++.+++++++|+.+++.|.
T Consensus 35 ~~~D~IlisH~H~DH~~~~~l~----~~-----------------~~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~ 93 (163)
T PF13483_consen 35 PKADAILISHSHPDHFDPETLK----RL-----------------DRDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPR 93 (163)
T ss_dssp -B-SEEEESSSSTTT-CCCCCC----CH-----------------HTSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-T
T ss_pred CCCCEEEECCCccccCChhHhh----hc-----------------ccccEEEccceEEEEeeeEEEEEeeeccccCCCCc
Confidence 6799999999999999542111 00 2356778889999999999999999883
Q ss_pred CCceEEEEEeeCCcEEEEeCCCCCCccccccccccCCCccEEEEecC
Q 014242 215 PGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTT 261 (428)
Q Consensus 215 ~Gs~~~~~~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D~Li~E~T 261 (428)
...++|+++. +|.+|+|.||+....+..... ...++|++++-..
T Consensus 94 ~~~~~~~i~~-~g~~i~~~Gd~~~~~~~~~~~--~~~~vDvl~~p~~ 137 (163)
T PF13483_consen 94 GENVGYLIEV-GGVTIYHAGDTGFPPDDEQLK--QLGKVDVLFLPVG 137 (163)
T ss_dssp TCCEEEEEEE-TTEEEEE-TT--S---HHHHH--HH-S-SEEEEE--
T ss_pred CCeEEEEEEe-CCCEEEEECCCccCCCHHHHh--cccCCCEEEecCC
Confidence 3478999998 789999999999754432222 2368999999864
No 39
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.93 E-value=3.3e-09 Score=105.83 Aligned_cols=88 Identities=23% Similarity=0.235 Sum_probs=70.9
Q ss_pred CCccEEEeCCCchhhhCCccccc--CCCcEEeCHHHHHHHHHhhccCCCceEEcCCCcEEEECCEEEEEEEc-ccCCCce
Q 014242 142 KGCSAYFLTHFHYDHYGGLGKRW--SHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEA-NHCPGAA 218 (428)
Q Consensus 142 ~~id~v~iTH~H~DHiggL~~~~--~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i~~~~V~~~~a-~H~~Gs~ 218 (428)
.+|++|++||.|.||+||+..+. +..+||++......+. ..-..+..|+++.+++.+++++++ ||++|++
T Consensus 120 ~~L~~ILlTH~H~DH~GG~~~L~~~~ga~V~g~~~~~~~i~-------~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI 192 (329)
T PLN02398 120 RNLTYILNTHHHYDHTGGNLELKARYGAKVIGSAVDKDRIP-------GIDIVLKDGDKWMFAGHEVLVMETPGHTRGHI 192 (329)
T ss_pred CCceEEEECCCCchhhCCHHHHHHhcCCEEEEehHHhhhcc-------CCcEEeCCCCEEEECCeEEEEEeCCCcCCCCE
Confidence 47999999999999999999643 3579999987543221 123567889999999999999998 9999999
Q ss_pred EEEEEeeCCcEEEEeCCCCCC
Q 014242 219 LIHFRLQDGQCYLHTGDFRAS 239 (428)
Q Consensus 219 ~~~~~~~~g~~ilytGD~~~~ 239 (428)
+|++.. . .++|+||+-+.
T Consensus 193 ~~~~~~--~-~vLFtGDtLf~ 210 (329)
T PLN02398 193 SFYFPG--S-GAIFTGDTLFS 210 (329)
T ss_pred EEEECC--C-CEEEECCCcCC
Confidence 998753 2 59999999875
No 40
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.88 E-value=2.2e-09 Score=103.60 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=76.9
Q ss_pred CCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCcccc---cCCCcEEeCHHHHHHHHHhhccCCC
Q 014242 112 LKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCLLVNPS 188 (428)
Q Consensus 112 ~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~~~~~~ 188 (428)
.+..+++|+|.... .+....... .++++|++||.|.||+||+..+ ....+||++..... ..
T Consensus 21 ~~~~ilIDpg~~~~------vl~~l~~~g-~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~---------~~ 84 (251)
T PRK10241 21 AGRCLIVDPGEAEP------VLNAIAENN-WQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQD---------KG 84 (251)
T ss_pred CCcEEEECCCChHH------HHHHHHHcC-CccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccc---------cC
Confidence 35678999986432 122222112 3578999999999999999863 34578998764321 11
Q ss_pred ceEEcCCCcEEEECCEEEEEEEc-ccCCCceEEEEEeeCCcEEEEeCCCCCC
Q 014242 189 YIHPLELNTEHVIDGVKVTLLEA-NHCPGAALIHFRLQDGQCYLHTGDFRAS 239 (428)
Q Consensus 189 ~i~~v~~~~~~~i~~~~V~~~~a-~H~~Gs~~~~~~~~~g~~ilytGD~~~~ 239 (428)
..+.+..++.+.+++.+++++++ ||++|+++|+. . .++||||+-+.
T Consensus 85 ~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~---~--~~lFtGDtlf~ 131 (251)
T PRK10241 85 TTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFS---K--PYLFCGDTLFS 131 (251)
T ss_pred CceEeCCCCEEEeCCcEEEEEEcCCCCccceeeec---C--CcEEEcCeecc
Confidence 23567889999999999999997 99999999963 2 48999999764
No 41
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.87 E-value=2.8e-09 Score=100.53 Aligned_cols=123 Identities=23% Similarity=0.248 Sum_probs=80.2
Q ss_pred CceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc--C-CCcEEeCHHHHHHHHHhh------
Q 014242 113 KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW--S-HGPIYCSPLTARLVRMCL------ 183 (428)
Q Consensus 113 ~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~--~-~~~Iy~s~~t~~~l~~~~------ 183 (428)
...+++|||..... .....+....... +|++|++||.|.||+||+..+. . ..+++..+..........
T Consensus 35 ~~~~liD~G~~~~~--~~~~~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (252)
T COG0491 35 GGAVLIDTGLGDAD--AEALLEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGV 111 (252)
T ss_pred CceEEEeCCCCchH--HHHHHHHHHHcCC-ChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhhccccccccc
Confidence 47899999985521 0111122211222 7999999999999999998542 1 256655544433222111
Q ss_pred -----ccC-CCceEEcCCCcEEEECCEEEEEEEc-ccCCCceEEEEEeeCCcEEEEeCCCCCCcc
Q 014242 184 -----LVN-PSYIHPLELNTEHVIDGVKVTLLEA-NHCPGAALIHFRLQDGQCYLHTGDFRASRL 241 (428)
Q Consensus 184 -----~~~-~~~i~~v~~~~~~~i~~~~V~~~~a-~H~~Gs~~~~~~~~~g~~ilytGD~~~~~~ 241 (428)
..+ ......+..++.+.+++..++++++ ||++|+++++++. + +++|+||.-+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~--~-~~l~~gD~~~~~~ 173 (252)
T COG0491 112 TAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLED--G-GVLFTGDTLFAGD 173 (252)
T ss_pred ccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECC--c-cEEEecceeccCC
Confidence 001 1233445578888998877777777 9999999999985 2 3999999988654
No 42
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=98.80 E-value=1.8e-08 Score=86.57 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=43.9
Q ss_pred CCceEEEeecCCCChhhHHHHHhhhcCCCCcEEEEeeccccccCCCCCcc
Q 014242 346 NDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQL 395 (428)
Q Consensus 346 ~~~~I~v~~~~~l~~g~~~~~~~~~~~~~~~~i~~~ptG~~~~~t~g~~l 395 (428)
.+|+|+|++++||++|++..+++++..+++|+|+| +||++++|+|++|
T Consensus 79 ~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~--~gy~~~~T~g~~l 126 (126)
T PF10996_consen 79 SGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIF--TGYQAPGTLGRRL 126 (126)
T ss_dssp CSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEE--SSS--TTSHHHHH
T ss_pred CCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEE--ecCCCCCCccccC
Confidence 58999999999999999999999999999999999 9999999999864
No 43
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.77 E-value=1.1e-07 Score=95.01 Aligned_cols=144 Identities=19% Similarity=0.271 Sum_probs=96.8
Q ss_pred CCccEEEeCCCchhhhCCccc----c----cCCCcEEeCHHHHHHHHHhh-c--cC-------------CCceEEcCCCc
Q 014242 142 KGCSAYFLTHFHYDHYGGLGK----R----WSHGPIYCSPLTARLVRMCL-L--VN-------------PSYIHPLELNT 197 (428)
Q Consensus 142 ~~id~v~iTH~H~DHiggL~~----~----~~~~~Iy~s~~t~~~l~~~~-~--~~-------------~~~i~~v~~~~ 197 (428)
..|.++||||+|.||+.||-- . ....+||+.+.|.+.++..+ . +. ...+..+.+++
T Consensus 78 ~~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~ 157 (335)
T PF02112_consen 78 NHIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGE 157 (335)
T ss_pred HhhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccc
Confidence 478999999999999999962 2 14678999999999887532 1 00 01233444444
Q ss_pred EEEEC-------------CEEEEEEEcccC-CC-----ceEEEEEeeC-CcEEEEeCCCCCCccccc----------ccc
Q 014242 198 EHVID-------------GVKVTLLEANHC-PG-----AALIHFRLQD-GQCYLHTGDFRASRLMQS----------YPL 247 (428)
Q Consensus 198 ~~~i~-------------~~~V~~~~a~H~-~G-----s~~~~~~~~~-g~~ilytGD~~~~~~~~~----------~~~ 247 (428)
...+. ...|++++..|. .- |.+|+|+... |+.|+|.||+..+..... .|.
T Consensus 158 ~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~ 237 (335)
T PF02112_consen 158 LIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPK 237 (335)
T ss_pred eeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhh
Confidence 33322 356777999993 23 7999999742 468999999998543111 122
Q ss_pred ccCCCccEEEEecCCCCCC-----CCCCChHHHHHHHHHHHHH
Q 014242 248 LVNHRVNVLYLDTTYCNPK-----YKFPSKEDVLNYVVRLTKN 285 (428)
Q Consensus 248 l~~~~~D~Li~E~Ty~~~~-----~~~ps~~~~~~~l~~~i~~ 285 (428)
+...++..+++||.|.+.. +-|-++....+++..+.+.
T Consensus 238 I~~~~LkaI~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~~ 280 (335)
T PF02112_consen 238 IASGKLKAIFIECSYPNSQPDSQLYGHLTPKHLIEELKVLASK 280 (335)
T ss_pred ccccccCEEEEEeCCCCCCCchHhhccCCHHHHHHHHHHHHhc
Confidence 3467899999999998643 2256666677766665543
No 44
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.76 E-value=4.6e-07 Score=91.36 Aligned_cols=125 Identities=17% Similarity=0.088 Sum_probs=97.9
Q ss_pred cCCCCccc-cCCceEEEcCCCCCCCC----CcceEecCCCcCCCCCccEEEeCCCchhhhCCccc---ccCCCcEEeCHH
Q 014242 103 SNGKSTAT-HLKKIVDRSCPFYKKIP----GTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK---RWSHGPIYCSPL 174 (428)
Q Consensus 103 g~~~~~~~-~~~~~~liDcG~~~~~~----~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~---~~~~~~Iy~s~~ 174 (428)
|+..|+++ .++...|+|.+-..... ...-.+|+ ++||+|+++|.-.||.|+++. ..++.+|+||..
T Consensus 33 GttyNSYLI~~~k~aLID~~~~~~~~~~l~~l~~~id~------k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~ 106 (388)
T COG0426 33 GTTYNSYLIVGDKTALIDTVGEKFFDEYLENLSKYIDP------KEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKL 106 (388)
T ss_pred CceeeeEEEeCCcEEEECCCCcchHHHHHHHHHhhcCh------hcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHH
Confidence 55555555 57788899998755321 11223443 679999999999999999996 456889999999
Q ss_pred HHHHHHHhhccCCCceEEcCCCcEEEECCEEEEEEEc--ccCCCceEEEEEeeCCcEEEEeCCCC
Q 014242 175 TARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEA--NHCPGAALIHFRLQDGQCYLHTGDFR 237 (428)
Q Consensus 175 t~~~l~~~~~~~~~~i~~v~~~~~~~i~~~~V~~~~a--~H~~Gs~~~~~~~~~g~~ilytGD~~ 237 (428)
.++.++.....+.. ++.++.|+++.+++.+++++++ -|.|+++..+... .+||||+|..
T Consensus 107 ~~~~L~~~~~~~~~-~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd~~---~kILFS~D~f 167 (388)
T COG0426 107 AARFLKGFYHDPEW-FKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYDPE---DKILFSCDAF 167 (388)
T ss_pred HHHHHHHhcCCccc-eeecCCCCEeccCCcEEEEEeCCCCCCCCceeEeecC---CcEEEccccc
Confidence 99999877665544 8899999999999999999998 8999998877653 2699999963
No 45
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.75 E-value=1.5e-08 Score=97.78 Aligned_cols=113 Identities=14% Similarity=-0.059 Sum_probs=77.3
Q ss_pred CceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc---CCCcEEeCHHHHHHHHHhhccCCCc
Q 014242 113 KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW---SHGPIYCSPLTARLVRMCLLVNPSY 189 (428)
Q Consensus 113 ~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~---~~~~Iy~s~~t~~~l~~~~~~~~~~ 189 (428)
+.+++||.|.... +..++...... .+|.+||+||.|.||++|+..+. ...++|++... .. ..
T Consensus 36 ~~avlIDP~~~~~----~~~l~~l~~~g-~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~--------~~--~~ 100 (251)
T PLN02962 36 KPALLIDPVDKTV----DRDLSLVKELG-LKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKAS--------GS--KA 100 (251)
T ss_pred CEEEEECCCCCcH----HHHHHHHHHCC-CeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEecccc--------CC--CC
Confidence 4678899874210 00112111112 36889999999999999998643 35788876421 11 11
Q ss_pred eEEcCCCcEEEECCEEEEEEEc-ccCCCceEEEEEee---CCcEEEEeCCCCCCc
Q 014242 190 IHPLELNTEHVIDGVKVTLLEA-NHCPGAALIHFRLQ---DGQCYLHTGDFRASR 240 (428)
Q Consensus 190 i~~v~~~~~~~i~~~~V~~~~a-~H~~Gs~~~~~~~~---~g~~ilytGD~~~~~ 240 (428)
-..++.++.+.+++++++++.+ ||++|+++|++... ...+++||||+-+..
T Consensus 101 d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~ 155 (251)
T PLN02962 101 DLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIR 155 (251)
T ss_pred CEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccC
Confidence 2447789999999999999998 99999999987531 123699999997753
No 46
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.71 E-value=5.3e-09 Score=93.86 Aligned_cols=128 Identities=22% Similarity=0.076 Sum_probs=69.6
Q ss_pred cCCceEEEcCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCchhhhCCccccc---CCCcEEeCHHHHHHHHHhhc---
Q 014242 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW---SHGPIYCSPLTARLVRMCLL--- 184 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~~---~~~~Iy~s~~t~~~l~~~~~--- 184 (428)
.++..+++|||.......... . ........+|++||+||.|.||+||++.+. ....+++.............
T Consensus 13 ~~~~~iliD~G~~~~~~~~~~-~-~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (194)
T PF00753_consen 13 GGDGAILIDTGLDPDFAKELE-L-ALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAIRPPDRDSA 90 (194)
T ss_dssp ETTEEEEESEBSSHHHHHHHH-H-HHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEeCCCCchhhHHhh-h-hHhhccCCCeEEEEECcccccccccccccccccceeeeeccccccccccccccccc
Confidence 678899999999664222110 0 001113478999999999999999999643 22334444433332221110
Q ss_pred -----cCCCceEEcCCCcEEEE-CCEEEEEEEcccCCCceEEEEEeeCCcEEEEeCCCCCCccc
Q 014242 185 -----VNPSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLM 242 (428)
Q Consensus 185 -----~~~~~i~~v~~~~~~~i-~~~~V~~~~a~H~~Gs~~~~~~~~~g~~ilytGD~~~~~~~ 242 (428)
................. +...+.. ...|..++..+.+.. .+.+++||||+......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~vlftGD~~~~~~~ 152 (194)
T PF00753_consen 91 SRRGPAVPPPPIIDEDEDDLEIGGDRILFI-IPGPGHGSDSLIIYL-PGGKVLFTGDLLFSNEH 152 (194)
T ss_dssp HHHHHHHESEEEEEETTTEEEEETTEEEEE-EESSSSSTTEEEEEE-TTTTEEEEETTSCTTTS
T ss_pred cccccccccccceeeecccccccccccccc-eeccccCCcceEEEe-CCCcEEEeeeEeccCCc
Confidence 00111222333333333 4444433 344444444444554 34589999999986553
No 47
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.57 E-value=1.3e-07 Score=90.78 Aligned_cols=89 Identities=22% Similarity=0.264 Sum_probs=68.6
Q ss_pred CCccEEEeCCCchhhhCCccccc----CCCcEEeCHHHHHHHHHhhccCCCceEEcCCCcEEEECCEEEEEEEc-ccCCC
Q 014242 142 KGCSAYFLTHFHYDHYGGLGKRW----SHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEA-NHCPG 216 (428)
Q Consensus 142 ~~id~v~iTH~H~DHiggL~~~~----~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i~~~~V~~~~a-~H~~G 216 (428)
.++.+||.||-|.||+||+..+. +...+|.... ... +..-+.++.++.+.+++++|+.+++ ||+.|
T Consensus 50 ~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~------~r~---~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~ 120 (265)
T KOG0813|consen 50 RRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGAD------DRI---PGITRGLKDGETVTVGGLEVRCLHTPGHTAG 120 (265)
T ss_pred CceeEEEeccccccccCcHHHHHhhccCCcEEecCCh------hcC---ccccccCCCCcEEEECCEEEEEEeCCCccCC
Confidence 67999999999999999999643 2455776641 111 1112337788999999999999999 99999
Q ss_pred ceEEEEEeeCCcEEEEeCCCCCC
Q 014242 217 AALIHFRLQDGQCYLHTGDFRAS 239 (428)
Q Consensus 217 s~~~~~~~~~g~~ilytGD~~~~ 239 (428)
+++|++....|.+.+||||+-+.
T Consensus 121 hi~~~~~~~~~e~~iFtGDtlf~ 143 (265)
T KOG0813|consen 121 HICYYVTESTGERAIFTGDTLFG 143 (265)
T ss_pred cEEEEeecCCCCCeEEeCCceee
Confidence 99999983235689999999764
No 48
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.23 E-value=8.3e-06 Score=77.67 Aligned_cols=140 Identities=17% Similarity=0.274 Sum_probs=92.4
Q ss_pred CCccEEEeCCCchhhhCCccc------ccCCCcEEeCHHHHHHHHHhhc---cC---------CCceEEcCCCcEEEE--
Q 014242 142 KGCSAYFLTHFHYDHYGGLGK------RWSHGPIYCSPLTARLVRMCLL---VN---------PSYIHPLELNTEHVI-- 201 (428)
Q Consensus 142 ~~id~v~iTH~H~DHiggL~~------~~~~~~Iy~s~~t~~~l~~~~~---~~---------~~~i~~v~~~~~~~i-- 201 (428)
..|...+|||+|.||+.|+-- ...+..||+.+.|...++...- +. ..+++.+++.+...+
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~ 190 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTL 190 (356)
T ss_pred hhhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeee
Confidence 568899999999999999962 1234589999999988875421 11 134667777765544
Q ss_pred CCEEEEEEEcccC--CC----ceEEEEEee-CCcEEEEeCCCCCCcccccc----------ccccCCCccEEEEecCCCC
Q 014242 202 DGVKVTLLEANHC--PG----AALIHFRLQ-DGQCYLHTGDFRASRLMQSY----------PLLVNHRVNVLYLDTTYCN 264 (428)
Q Consensus 202 ~~~~V~~~~a~H~--~G----s~~~~~~~~-~g~~ilytGD~~~~~~~~~~----------~~l~~~~~D~Li~E~Ty~~ 264 (428)
-..++.++|+.|- -| |.+|+|... ..+-++|.||...+...... ..+....+.-+++||.|.+
T Consensus 191 t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS~P~ 270 (356)
T COG5212 191 TRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECSYPN 270 (356)
T ss_pred eeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEecCCC
Confidence 4578889999992 23 578888862 13479999999876432110 1122467788999999976
Q ss_pred CCC-----CCCChHHHHHHHHH
Q 014242 265 PKY-----KFPSKEDVLNYVVR 281 (428)
Q Consensus 265 ~~~-----~~ps~~~~~~~l~~ 281 (428)
... -|-++.-.++++..
T Consensus 271 ~~~~~~LfGH~~P~~L~nEL~~ 292 (356)
T COG5212 271 DVADNKLFGHMTPTWLLNELKK 292 (356)
T ss_pred CCChhHhhcccChHHHHHHHHH
Confidence 432 13344445555443
No 49
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.00 E-value=9.4e-05 Score=70.00 Aligned_cols=205 Identities=13% Similarity=0.152 Sum_probs=110.3
Q ss_pred cCCceEEEcCCCCCCCCCcceEecCCCc-------------CCCCCccEEEeCCCchhhhCCccc-----------ccCC
Q 014242 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRY-------------GSIKGCSAYFLTHFHYDHYGGLGK-----------RWSH 166 (428)
Q Consensus 111 ~~~~~~liDcG~~~~~~~~~~~iD~f~~-------------~~i~~id~v~iTH~H~DHiggL~~-----------~~~~ 166 (428)
+++-.+++|-|... ...++.++|... ....+.+.+.|||.|.||.--.-. ..+.
T Consensus 22 t~dv~ILiDpGVsL--aPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~~eiY~ 99 (304)
T COG2248 22 TKDVGILIDPGVSL--APKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETAKEIYK 99 (304)
T ss_pred cCCeeEEECCcccc--CccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccchHHHhc
Confidence 67788899999843 222344444221 112468899999999999854211 0111
Q ss_pred CcE-EeCHHHHHHHHH-------hhc-c-CCCceEEcCCCcEEEECCEEEEEEEc-ccCC-Cc-----eEEEEEeeCCcE
Q 014242 167 GPI-YCSPLTARLVRM-------CLL-V-NPSYIHPLELNTEHVIDGVKVTLLEA-NHCP-GA-----ALIHFRLQDGQC 229 (428)
Q Consensus 167 ~~I-y~s~~t~~~l~~-------~~~-~-~~~~i~~v~~~~~~~i~~~~V~~~~a-~H~~-Gs-----~~~~~~~~~g~~ 229 (428)
+++ .+-.+|..+-+. .+. . ....-.....+.++++++..|.+=+. -|-+ |+ +++.+.. ++.+
T Consensus 100 gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~d-g~~~ 178 (304)
T COG2248 100 GKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTD-GKSS 178 (304)
T ss_pred CcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEec-CCeE
Confidence 222 221122111100 000 0 00123446678999999999998876 7833 32 3455554 4569
Q ss_pred EEEeCCCC-CCccccccccccCCCccEEEEec--CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccc---c
Q 014242 230 YLHTGDFR-ASRLMQSYPLLVNHRVNVLYLDT--TYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSI---G 303 (428)
Q Consensus 230 ilytGD~~-~~~~~~~~~~l~~~~~D~Li~E~--Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~sl---G 303 (428)
|+|+.|.. ...+.. ..++..+++|++|+++ ||... +... ....+.-++-+++.+++.++. ++|-+..+ +
T Consensus 179 i~faSDvqGp~~~~~-l~~i~e~~P~v~ii~GPpty~lg-~r~~--~~~~E~~irNl~~ii~~~~~~-lViDHHllRD~~ 253 (304)
T COG2248 179 IVFASDVQGPINDEA-LEFILEKRPDVLIIGGPPTYLLG-YRVG--PKSLEKGIRNLERIIEETNAT-LVIDHHLLRDKN 253 (304)
T ss_pred EEEcccccCCCccHH-HHHHHhcCCCEEEecCCchhHhh-hhcC--hHHHHHHHHHHHHHHHhCcce-EEEeehhhcCCC
Confidence 99999996 332222 1223357999999987 32211 1111 223334444455555555543 45544332 2
Q ss_pred HH---HHHHHHHHHcCCeEEEec
Q 014242 304 KE---SVFLAISKALGVKIYANA 323 (428)
Q Consensus 304 re---qell~i~~~~~~~I~v~~ 323 (428)
.. +++-+.++..|+.|....
T Consensus 254 y~e~l~~l~~~~~~~GV~v~TaA 276 (304)
T COG2248 254 YREFLEELFERAEKAGVEVATAA 276 (304)
T ss_pred HHHHHHHHHhhHhhcCceeeeHH
Confidence 22 455666777788877653
No 50
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=97.85 E-value=3.7e-05 Score=73.29 Aligned_cols=60 Identities=25% Similarity=0.270 Sum_probs=44.8
Q ss_pred CCceEEEcCCCCCCCC---CcceEecCCCcCCCCCccEEEeCCCchhhhCCcccc----cCCCcEEeCHHHHH
Q 014242 112 LKKIVDRSCPFYKKIP---GTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR----WSHGPIYCSPLTAR 177 (428)
Q Consensus 112 ~~~~~liDcG~~~~~~---~~~~~iD~f~~~~i~~id~v~iTH~H~DHiggL~~~----~~~~~Iy~s~~t~~ 177 (428)
...++|.|.|...... ...+.+|+ .+||+++|||.|.||+|||+.+ ....+||+++....
T Consensus 30 ~~~riLFDtG~~~~~ll~Na~~lgvd~------~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 30 EGTRILFDTGTDSDVLLHNARLLGVDL------RDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHcCCCc------ccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 3468999999755421 22345554 6899999999999999999953 25679999987654
No 51
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=97.44 E-value=0.00033 Score=62.87 Aligned_cols=86 Identities=21% Similarity=0.084 Sum_probs=59.5
Q ss_pred CccEEEeCCCchhhhCCcccccCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCcEEEECCEEEEEEEc-ccCCCceEEE
Q 014242 143 GCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEA-NHCPGAALIH 221 (428)
Q Consensus 143 ~id~v~iTH~H~DHiggL~~~~~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i~~~~V~~~~a-~H~~Gs~~~~ 221 (428)
++-+-+-||.|+||+-|-..+..-.| ..+..+....+. ..-.-++.|+.++|+++.+++..+ ||++|++-|.
T Consensus 57 ~LiYa~NTH~HADHiTGtg~Lkt~~p-----g~kSVis~~SGa--kAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV 129 (237)
T KOG0814|consen 57 DLIYALNTHVHADHITGTGLLKTLLP-----GCKSVISSASGA--KADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYV 129 (237)
T ss_pred eeeeeecceeecccccccchHHHhcc-----cHHHHhhhcccc--ccccccCCCCEEEEccEEEEEecCCCCCCceEEEE
Confidence 45667889999999988775432111 112222222221 223457899999999999999988 9999998887
Q ss_pred EEeeCCcEEEEeCCCCC
Q 014242 222 FRLQDGQCYLHTGDFRA 238 (428)
Q Consensus 222 ~~~~~g~~ilytGD~~~ 238 (428)
... .+..||||.-.
T Consensus 130 ~~d---~~~aFTGDalL 143 (237)
T KOG0814|consen 130 EHD---LRMAFTGDALL 143 (237)
T ss_pred ecC---cceeeecceeE
Confidence 763 37999999754
No 52
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.11 E-value=0.0035 Score=59.57 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=85.1
Q ss_pred CCCCccEEEeCCCchhhhCCcccc---cCCCcE-EeCHHHHHHHHHhhccCCCceEEcCCCcEEEE----CCEEEEEEEc
Q 014242 140 SIKGCSAYFLTHFHYDHYGGLGKR---WSHGPI-YCSPLTARLVRMCLLVNPSYIHPLELNTEHVI----DGVKVTLLEA 211 (428)
Q Consensus 140 ~i~~id~v~iTH~H~DHiggL~~~---~~~~~I-y~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i----~~~~V~~~~a 211 (428)
.+.++|.+++||.|.||...-... ....++ +.+...+..+ .+.....+..+..+++.++ +-++|.+.|+
T Consensus 129 ~~p~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~m---~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPa 205 (343)
T KOG3798|consen 129 DLPDLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKWM---EGDGSSTVTELNWGESSEFVKNGKTYTIWCLPA 205 (343)
T ss_pred cCCCCceeccccccccccchHHHHhhhccCccceeehhhhhhee---cCCCCCceeEeeccchhceecCCcEEEEEEcch
Confidence 457899999999999998544321 112222 2222221111 1111122344444444443 2377888899
Q ss_pred ccCCC-c---------eEEEEEeeCCcEEEEeCCCCCCcccc-ccccccCCCccEEEEec-CCCCCC---CCCCChHHHH
Q 014242 212 NHCPG-A---------ALIHFRLQDGQCYLHTGDFRASRLMQ-SYPLLVNHRVNVLYLDT-TYCNPK---YKFPSKEDVL 276 (428)
Q Consensus 212 ~H~~G-s---------~~~~~~~~~g~~ilytGD~~~~~~~~-~~~~l~~~~~D~Li~E~-Ty~~~~---~~~ps~~~~~ 276 (428)
.|.-+ + .++.+..+ +.+++|.||+++++... .... ...++|+..+-+ .|..+- ++|-..++++
T Consensus 206 qHw~~R~L~D~Nk~LW~sw~v~g~-~nrfffaGDTGyc~~~F~~Ige-rfGpfdLAaiPiGaYePrWfmK~~HInPeEav 283 (343)
T KOG3798|consen 206 QHWGQRGLFDRNKRLWSSWAVIGE-NNRFFFAGDTGYCDGEFKKIGE-RFGPFDLAAIPIGAYEPRWFMKSQHINPEEAV 283 (343)
T ss_pred hhhcccccccCCcceeeeeEEecC-CceEEecCCCCcccHHHHHHHH-hcCCcceeeccccccCchhhcccccCCHHHHH
Confidence 99332 1 23455553 45999999999998432 1111 235688877766 454432 2344444444
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccHH
Q 014242 277 NYVVRLTKNCLKKQPKTLVVVGAYSIGKE 305 (428)
Q Consensus 277 ~~l~~~i~~~l~~g~~~lvli~~~slGre 305 (428)
+ +-+ -++.....-|..++|.+|-|
T Consensus 284 ~----Ihk-dv~arns~gIHWGTf~l~~E 307 (343)
T KOG3798|consen 284 E----IHK-DVRAKNSIGIHWGTFHLGSE 307 (343)
T ss_pred H----HHH-HHhhhcceeEeeeeeecccc
Confidence 3 222 22223335578899998876
No 53
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=96.09 E-value=0.0039 Score=43.33 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=20.1
Q ss_pred CCCEEEEEEccccCCCHHHHHHHHh
Q 014242 403 RGNITIYGVPYSEHSSFTELREFVQ 427 (428)
Q Consensus 403 ~~~~~i~~i~~S~Hs~~~eL~~fv~ 427 (428)
+.++++..+.||+|||++||++|++
T Consensus 4 ~v~a~v~~~~fSgHad~~~L~~~i~ 28 (43)
T PF07521_consen 4 PVRARVEQIDFSGHADREELLEFIE 28 (43)
T ss_dssp E--SEEEESGCSSS-BHHHHHHHHH
T ss_pred EeEEEEEEEeecCCCCHHHHHHHHH
Confidence 3578899999999999999999986
No 54
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=95.95 E-value=0.0024 Score=57.95 Aligned_cols=85 Identities=21% Similarity=0.208 Sum_probs=53.5
Q ss_pred CCCccEEEeCCCchhhhCCcccc--cCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCcEEEECCEEEEEEEcccCCCce
Q 014242 141 IKGCSAYFLTHFHYDHYGGLGKR--WSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAA 218 (428)
Q Consensus 141 i~~id~v~iTH~H~DHiggL~~~--~~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i~~~~V~~~~a~H~~Gs~ 218 (428)
+..+++|+|||. ||+...... .+..+||.+...++.. ... .-+.+..|+ -.+++++|..++-.|+||.+
T Consensus 53 ~ggv~~IvLTn~--dHvR~A~~ya~~~~a~i~~p~~d~~~~----p~~--~D~~l~dge-~i~~g~~vi~l~G~ktpGE~ 123 (199)
T PF14597_consen 53 LGGVAWIVLTNR--DHVRAAEDYAEQTGAKIYGPAADAAQF----PLA--CDRWLADGE-EIVPGLWVIHLPGSKTPGEL 123 (199)
T ss_dssp TT--SEEE-SSG--GG-TTHHHHHHHS--EEEEEGGGCCC-----SS----SEEE-TT--BSSTTEEEEEE-SSSSTTEE
T ss_pred cCCceEEEEeCC--hhHhHHHHHHHHhCCeeeccHHHHhhC----CCC--CccccccCC-CccCceEEEEcCCCCCCcee
Confidence 467999999986 999887753 3567999998765322 111 123445555 23478999888877999999
Q ss_pred EEEEEeeCCcEEEEeCCCCC
Q 014242 219 LIHFRLQDGQCYLHTGDFRA 238 (428)
Q Consensus 219 ~~~~~~~~g~~ilytGD~~~ 238 (428)
.++++. ++++|||.-.
T Consensus 124 ALlled----~vLi~GDl~~ 139 (199)
T PF14597_consen 124 ALLLED----RVLITGDLLR 139 (199)
T ss_dssp EEEETT----TEEEESSSEE
T ss_pred EEEecc----ceEEecceee
Confidence 999873 5999999644
No 55
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.27 E-value=0.066 Score=55.40 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=28.2
Q ss_pred CCCCccEEEeCCCchhhhCCcccc-------cCCCcEEeCHHHH
Q 014242 140 SIKGCSAYFLTHFHYDHYGGLGKR-------WSHGPIYCSPLTA 176 (428)
Q Consensus 140 ~i~~id~v~iTH~H~DHiggL~~~-------~~~~~Iy~s~~t~ 176 (428)
.-.+|.+|+.||.|.||.||+... ....+|+++..-.
T Consensus 161 g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GFm 204 (655)
T COG2015 161 GQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGFM 204 (655)
T ss_pred CCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchhHH
Confidence 346899999999999999999742 2356788876543
No 56
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.65 E-value=4.2 Score=39.90 Aligned_cols=92 Identities=14% Similarity=0.051 Sum_probs=51.2
Q ss_pred CCCccEEEeCCCchhhhCCcccccCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCcEEEECCEEEEEE-EcccCCCceE
Q 014242 141 IKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLL-EANHCPGAAL 219 (428)
Q Consensus 141 i~~id~v~iTH~H~DHiggL~~~~~~~~Iy~s~~t~~~l~~~~~~~~~~i~~v~~~~~~~i~~~~V~~~-~a~H~~Gs~~ 219 (428)
..+|+.+.+||.|.+|++++..+.. .+++.. .. .+......-..++.+...++.. .+.+- -.||..-+..
T Consensus 123 ~d~i~~vv~t~~~~~hlgn~~~f~~-sp~l~~-s~------e~~gr~~~pt~l~e~~~~~l~~-~~~V~~TpGht~~~is 193 (302)
T KOG4736|consen 123 LDQIDSVVITHKSPGHLGNNNLFPQ-SPILYH-SM------EYIGRHVTPTELDERPYLKLSP-NVEVWKTPGHTQHDIS 193 (302)
T ss_pred hhhcceeEEeccCcccccccccccC-CHHHhh-hh------hhcCCccChhhhccCCccccCC-ceeEeeCCCCCCcceE
Confidence 3689999999999999998864422 122111 00 0111011112234444455542 22233 3488777776
Q ss_pred EEEEeeC-CcEEEEeCCCCCCcc
Q 014242 220 IHFRLQD-GQCYLHTGDFRASRL 241 (428)
Q Consensus 220 ~~~~~~~-g~~ilytGD~~~~~~ 241 (428)
.++...+ ..+++++||.-....
T Consensus 194 vlv~n~~~~GTv~itGDLf~~~~ 216 (302)
T KOG4736|consen 194 VLVHNVDLYGTVAITGDLFPREE 216 (302)
T ss_pred EEEEeecccceEEEEeecccCCc
Confidence 6666432 238999999977543
No 57
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=59.51 E-value=4.4 Score=30.55 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=29.5
Q ss_pred cCCceEEE-cCCCCCCCCCcceEecCCCcCCCCCccEEEeCCCc-hhhhCC
Q 014242 111 HLKKIVDR-SCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFH-YDHYGG 159 (428)
Q Consensus 111 ~~~~~~li-DcG~~~~~~~~~~~iD~f~~~~i~~id~v~iTH~H-~DHigg 159 (428)
.+..+++. .||..... +... ....+.++.+||+|+.+ .+++||
T Consensus 19 ~d~~rYlFGn~gEGtQR----~~~e--~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 19 FDSRRYLFGNCGEGTQR----ACNE--HKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred eCCceEEeccCCcHHHH----HHHH--cCCCccccceEEECCCCcccccCC
Confidence 45678899 89984421 1111 11134789999999999 999987
No 58
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=51.33 E-value=21 Score=33.12 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=49.7
Q ss_pred cEEEEeCCCCCCccc-cccccccCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHh-CCCeEEEEccccccHH
Q 014242 228 QCYLHTGDFRASRLM-QSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKK-QPKTLVVVGAYSIGKE 305 (428)
Q Consensus 228 ~~ilytGD~~~~~~~-~~~~~l~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~-g~~~lvli~~~slGre 305 (428)
-.|+||||-++..-- .....+...++-++=+|+...-- +..++++....+.++|+.+.++ +.+.+||| -||.|-.
T Consensus 4 ~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw--~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLi-GYSFGAD 80 (192)
T PF06057_consen 4 LAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFW--SERTPEQTAADLARIIRHYRARWGRKRVVLI-GYSFGAD 80 (192)
T ss_pred EEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHh--hhCCHHHHHHHHHHHHHHHHHHhCCceEEEE-eecCCch
Confidence 368999999986321 11223456788888888854332 2356788888899999888776 33345555 4888764
No 59
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=48.26 E-value=37 Score=39.01 Aligned_cols=101 Identities=10% Similarity=0.167 Sum_probs=65.6
Q ss_pred CCccEE-EEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEcc--------ccccHHHHHHHHHHHcCCeEEE
Q 014242 251 HRVNVL-YLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGA--------YSIGKESVFLAISKALGVKIYA 321 (428)
Q Consensus 251 ~~~D~L-i~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~--------~slGreqell~i~~~~~~~I~v 321 (428)
.+.|.| +-|++|++-.. .-+..+.+++..-++.+-+....++|+|+ .|.+|....|++|.+-++.|..
T Consensus 970 ~~pdaLVlWEAQFGDF~N---GAQtiIDefIss~e~KWgQ~S~vvlLLPHGyEGQGPdHSSaRiERfLqlcAe~nm~Va~ 1046 (1228)
T PRK12270 970 ERPDALVLWEAQFGDFAN---GAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPDHSSARIERFLQLCAEGNMTVAQ 1046 (1228)
T ss_pred CCCcceeeehhhhccccc---chHHHHHHHHhhhHhhhccccceEEEccCCcCCCCCCcchHHHHHHHHhhccCCeEEEc
Confidence 455555 55999998443 34566677776665555444444556654 5677778899999999999888
Q ss_pred echH---HHHHHhcCCCcccCCceecCCCceEEEeecCCCChhh
Q 014242 322 NASR---RRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFET 362 (428)
Q Consensus 322 ~~~~---~~i~~~~~~~~~~~~~~~d~~~~~I~v~~~~~l~~g~ 362 (428)
...- ..+++.- .......|.|+++|-+||+...
T Consensus 1047 psTPA~yFHLLRrq--------a~~~~~rPLvVfTPKSmLR~Ka 1082 (1228)
T PRK12270 1047 PSTPANYFHLLRRQ--------ALSGPRRPLVVFTPKSMLRLKA 1082 (1228)
T ss_pred cCChHHHHHHHHHH--------hhcCCCCCeEEEChHHhhcchh
Confidence 7643 3333321 1123568999999999987533
No 60
>PRK06683 hypothetical protein; Provisional
Probab=43.74 E-value=1.4e+02 Score=23.62 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=36.1
Q ss_pred HHHHhCCCeEEEEccccccHH-HHHHHHHHHcCCeEEEechHHHHHHhcCCCc
Q 014242 285 NCLKKQPKTLVVVGAYSIGKE-SVFLAISKALGVKIYANASRRRVLQSFDWPE 336 (428)
Q Consensus 285 ~~l~~g~~~lvli~~~slGre-qell~i~~~~~~~I~v~~~~~~i~~~~~~~~ 336 (428)
+.+++|.-.+|+|..-.--+. +.+...++..++|++....+.++=+..|.|.
T Consensus 21 kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~eLG~A~G~~~ 73 (82)
T PRK06683 21 EAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQV 73 (82)
T ss_pred HHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCcc
Confidence 344445445777765544333 4567789999999998888888878777764
No 61
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=29.61 E-value=1e+02 Score=26.22 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=26.9
Q ss_pred HHHhCCCeEEEEccccc--cHHHHHHHHHHHcCCeEEEechHH
Q 014242 286 CLKKQPKTLVVVGAYSI--GKESVFLAISKALGVKIYANASRR 326 (428)
Q Consensus 286 ~l~~g~~~lvli~~~sl--Greqell~i~~~~~~~I~v~~~~~ 326 (428)
.+++..+-+++++.-.. +-..++.+++++++.|++...+..
T Consensus 7 ~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~k 49 (137)
T PF00205_consen 7 LLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGK 49 (137)
T ss_dssp HHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGT
T ss_pred HHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccc
Confidence 34444555666654332 556789999999999998877653
No 62
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=29.46 E-value=2.7e+02 Score=21.98 Aligned_cols=49 Identities=6% Similarity=-0.039 Sum_probs=33.5
Q ss_pred HHHhCCCeEEEEccccccHH-HHHHHHHHHcCCeEEEechHHHHHHhcCC
Q 014242 286 CLKKQPKTLVVVGAYSIGKE-SVFLAISKALGVKIYANASRRRVLQSFDW 334 (428)
Q Consensus 286 ~l~~g~~~lvli~~~slGre-qell~i~~~~~~~I~v~~~~~~i~~~~~~ 334 (428)
.++++.-.+|+|..-..-+. +.+...++..++|++....+.++=+..|.
T Consensus 19 aIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~eLG~A~G~ 68 (82)
T PRK13601 19 AITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVMCGI 68 (82)
T ss_pred HHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHHHHHHHCC
Confidence 44445445777765544332 45677899999999888888887777764
No 63
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=29.18 E-value=24 Score=38.86 Aligned_cols=64 Identities=16% Similarity=0.046 Sum_probs=37.8
Q ss_pred cCCCCCceeeeccCCCCccc--cCCceEEEcCCCCCCCCCcceEecCCCc-CCCCCccEEEeCCCchhhhCCcc
Q 014242 91 CLFSPPMKKLKASNGKSTAT--HLKKIVDRSCPFYKKIPGTPFTVDAFRY-GSIKGCSAYFLTHFHYDHYGGLG 161 (428)
Q Consensus 91 ~g~~~~~~~l~~g~~~~~~~--~~~~~~liDcG~~~~~~~~~~~iD~f~~-~~i~~id~v~iTH~H~DHiggL~ 161 (428)
+..+.+++-++-|..+.+++ ..+..+|++-|...+.. .|.. ..+.+||+|+|||.-.|.++|+.
T Consensus 33 lklSKpCcYIfpGg~gdaALFavnGf~iLv~GgserKS~-------fwklVrHldrVdaVLLthpg~dNLpgin 99 (934)
T KOG3592|consen 33 LKLSKPCCYIFPGGRGDAALFAVNGFNILVNGGSERKSC-------FWKLVRHLDRVDAVLLTHPGADNLPGIN 99 (934)
T ss_pred hhcCCceEEECCCCCCcceeEeecceEEeecCCcccccc-------hHHHHHHHhhhhhhhhcccccCccccch
Confidence 33444444444444445555 45555566655532211 1111 24578999999999999999987
No 64
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=28.68 E-value=2.9e+02 Score=21.67 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=34.2
Q ss_pred HHHHhCCCeEEEEccccccH-HHHHHHHHHHcCCeEEEechHHHHHHhcCCC
Q 014242 285 NCLKKQPKTLVVVGAYSIGK-ESVFLAISKALGVKIYANASRRRVLQSFDWP 335 (428)
Q Consensus 285 ~~l~~g~~~lvli~~~slGr-eqell~i~~~~~~~I~v~~~~~~i~~~~~~~ 335 (428)
..++++.-.+|++..-..-+ .+.+..++++.++|++.-+.+.++=+..|.+
T Consensus 21 kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~eLG~a~G~~ 72 (82)
T PRK13602 21 KALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIE 72 (82)
T ss_pred HHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCC
Confidence 34455544567776543332 3457778999999998888777777777754
No 65
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=28.04 E-value=1.3e+02 Score=31.31 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcccccc---HHHHHHHHHHHcCCeEEEechHH
Q 014242 274 DVLNYVVRLTKNCLKKQPKTLVVVGAYSIG---KESVFLAISKALGVKIYANASRR 326 (428)
Q Consensus 274 ~~~~~l~~~i~~~l~~g~~~lvli~~~slG---reqell~i~~~~~~~I~v~~~~~ 326 (428)
...+.+++.+++.+.+-. .+++.-|.-| ..|.+++++++.|+||.+|++..
T Consensus 128 ~~~~~ll~~~~~~l~~~~--~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvDPKg~ 181 (467)
T COG2870 128 EDENKLLEKIKNALKSFD--ALVLSDYAKGVLTNVQKMIDLAREAGIPVLVDPKGK 181 (467)
T ss_pred hhHHHHHHHHHHHhhcCC--EEEEeccccccchhHHHHHHHHHHcCCcEEECCCCc
Confidence 555677777777776553 4667777544 24899999999999999998643
No 66
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=26.20 E-value=1.7e+02 Score=31.58 Aligned_cols=71 Identities=7% Similarity=-0.055 Sum_probs=46.5
Q ss_pred CCceEEEcCCCCCCCC---CcceEecCCCcC--CCCCccEEEeCCCchhhhCCccccc----CC-----CcEEeCHHHHH
Q 014242 112 LKKIVDRSCPFYKKIP---GTPFTVDAFRYG--SIKGCSAYFLTHFHYDHYGGLGKRW----SH-----GPIYCSPLTAR 177 (428)
Q Consensus 112 ~~~~~liDcG~~~~~~---~~~~~iD~f~~~--~i~~id~v~iTH~H~DHiggL~~~~----~~-----~~Iy~s~~t~~ 177 (428)
-.+.++++.|.+.... +....+++.... -....-++-++|.|.||.+.+++.. .+ .|||+...+.+
T Consensus 171 iagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrAqE 250 (668)
T KOG1137|consen 171 IAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRAQE 250 (668)
T ss_pred eceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchHHH
Confidence 4456688888866533 222334443321 1246778999999999999998631 22 58999888888
Q ss_pred HHHHh
Q 014242 178 LVRMC 182 (428)
Q Consensus 178 ~l~~~ 182 (428)
++..+
T Consensus 251 Lllil 255 (668)
T KOG1137|consen 251 LLLIL 255 (668)
T ss_pred HHHHH
Confidence 76654
No 67
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.73 E-value=2e+02 Score=24.01 Aligned_cols=55 Identities=5% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccHHHHHHHHHHHcCCeEEEe
Q 014242 251 HRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYAN 322 (428)
Q Consensus 251 ~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGreqell~i~~~~~~~I~v~ 322 (428)
..+|++++=. +.+ ...+.+++..+.+.+..++.+. ..++++++++++.++++.-+
T Consensus 54 ~~iDlavv~~----------~~~----~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 54 EPIDLAVVCV----------PPD----KVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp ST-SEEEE-S-----------HH----HHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEES
T ss_pred CCCCEEEEEc----------CHH----HHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeC
Confidence 6788886642 122 3444555666667766666655 66788999999999987644
No 68
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=24.69 E-value=2.8e+02 Score=24.55 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEccccccHHHHHHHHHHHcCCeEEEe
Q 014242 274 DVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYAN 322 (428)
Q Consensus 274 ~~~~~l~~~i~~~l~~g~~~lvli~~~slGreqell~i~~~~~~~I~v~ 322 (428)
...+.+++.+.+.++.+++ +++...+....+++++.+++.|..+.+.
T Consensus 117 ~~~~~~l~~~~~~Lk~gG~--~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 117 KVIDRFLDELPEILKEGGR--VQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred HHHHHHHHhHHHhhCCCCE--EEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 3456778888888888875 3333333344677888888887765543
No 69
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=22.98 E-value=4.3e+02 Score=21.76 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=33.9
Q ss_pred HHHHHHhCCCeEEEEccccccH-HHHHHHHHHHcCCeEEEechHHHHHHhcCCC
Q 014242 283 TKNCLKKQPKTLVVVGAYSIGK-ESVFLAISKALGVKIYANASRRRVLQSFDWP 335 (428)
Q Consensus 283 i~~~l~~g~~~lvli~~~slGr-eqell~i~~~~~~~I~v~~~~~~i~~~~~~~ 335 (428)
+.+.++++.-.+|+++.-..-. ...+...++.+++|++......++=..+|.+
T Consensus 25 v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~ 78 (104)
T PRK05583 25 CEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRD 78 (104)
T ss_pred HHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCCC
Confidence 3445555544566666543322 2456777888899988777777777777753
No 70
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=22.48 E-value=4.2e+02 Score=22.47 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=30.9
Q ss_pred HHhCCCeEEEEccccccHH--HHHHHHHHHcCCeEEEechHHHHHHhcCCC
Q 014242 287 LKKQPKTLVVVGAYSIGKE--SVFLAISKALGVKIYANASRRRVLQSFDWP 335 (428)
Q Consensus 287 l~~g~~~lvli~~~slGre--qell~i~~~~~~~I~v~~~~~~i~~~~~~~ 335 (428)
++++...+|+++.-..-++ ..+..++++.++|+...+.+.++=+.+|.+
T Consensus 42 ikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG~a~Gk~ 92 (122)
T PRK04175 42 VERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLGKAAGLE 92 (122)
T ss_pred HHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCC
Confidence 3334334666665443332 456678888899988777777777766653
No 71
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=22.02 E-value=4.1e+02 Score=22.12 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=33.4
Q ss_pred HHHHhCCCeEEEEccccccH-HHHHHHHHHHcCCeEEE-echHHHHHHhcCCC
Q 014242 285 NCLKKQPKTLVVVGAYSIGK-ESVFLAISKALGVKIYA-NASRRRVLQSFDWP 335 (428)
Q Consensus 285 ~~l~~g~~~lvli~~~slGr-eqell~i~~~~~~~I~v-~~~~~~i~~~~~~~ 335 (428)
+.++++.-.+|++..-...+ .+.+...++..++|++. .+...++=+..|.+
T Consensus 35 kalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~ 87 (108)
T PTZ00106 35 KALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRH 87 (108)
T ss_pred HHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCCc
Confidence 34444443566676544333 35677788999999986 47778877777754
No 72
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=21.91 E-value=4e+02 Score=20.94 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=34.7
Q ss_pred HHHHHhCCCeEEEEccccc--cHHHHHHHHHHHcCCeEEEechHHHHHHhcCCC
Q 014242 284 KNCLKKQPKTLVVVGAYSI--GKESVFLAISKALGVKIYANASRRRVLQSFDWP 335 (428)
Q Consensus 284 ~~~l~~g~~~lvli~~~sl--Greqell~i~~~~~~~I~v~~~~~~i~~~~~~~ 335 (428)
.+.++++...+|+++.-.. -+.+.+..++++.++|++.-..+.++-+.+|.+
T Consensus 24 ~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eLG~~~g~~ 77 (95)
T PF01248_consen 24 LKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEELGRACGKK 77 (95)
T ss_dssp HHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHHHHHTTSS
T ss_pred HHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHHHHHHCCC
Confidence 3445555444666654322 233446778899999999988888888888764
No 73
>PRK07714 hypothetical protein; Provisional
Probab=21.83 E-value=4.4e+02 Score=21.35 Aligned_cols=52 Identities=8% Similarity=0.032 Sum_probs=32.6
Q ss_pred HHHHHHhCCCeEEEEccccccHH-HHHHHHHHHcCCeEEEechHHHHHHhcCC
Q 014242 283 TKNCLKKQPKTLVVVGAYSIGKE-SVFLAISKALGVKIYANASRRRVLQSFDW 334 (428)
Q Consensus 283 i~~~l~~g~~~lvli~~~slGre-qell~i~~~~~~~I~v~~~~~~i~~~~~~ 334 (428)
+.+.++++.-.+|+++.-...+. ..+...++..++|++....+.++=..+|.
T Consensus 26 v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eLG~a~Gk 78 (100)
T PRK07714 26 VLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQLGHAIGK 78 (100)
T ss_pred HHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCC
Confidence 33455555445666765444333 34666778889998877777776666664
No 74
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=21.07 E-value=2.3e+02 Score=25.51 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=25.6
Q ss_pred CCeEEEEcccc--ccHHHHHHHHHHHcCCeEEEechH
Q 014242 291 PKTLVVVGAYS--IGKESVFLAISKALGVKIYANASR 325 (428)
Q Consensus 291 ~~~lvli~~~s--lGreqell~i~~~~~~~I~v~~~~ 325 (428)
.+-+++++.-. -+-.+++.++++.+++||+.....
T Consensus 28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 34456666433 366678899999999999988754
No 75
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=20.97 E-value=7.8e+02 Score=23.97 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=46.7
Q ss_pred HHHHhCCCeEEEEccccccHHH--HHHHHHHHcCCeEEEechHHHHHHhcCCCcccCCceecCCCceEEEeecCCCChhh
Q 014242 285 NCLKKQPKTLVVVGAYSIGKES--VFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFET 362 (428)
Q Consensus 285 ~~l~~g~~~lvli~~~slGreq--ell~i~~~~~~~I~v~~~~~~i~~~~~~~~~~~~~~~d~~~~~I~v~~~~~l~~g~ 362 (428)
..++++...+|+|..-..-.+. -+..+|+.+++|..+-+.+.++=+..|.. ..+.|.|+..+.=....
T Consensus 142 kaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKaeLG~AIGkK----------travVAItD~g~ed~~~ 211 (263)
T PTZ00222 142 RAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMARLGDAIGRK----------TATCVAITDVNAEDEAA 211 (263)
T ss_pred HHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHCCC----------CCeEEEEeeCCcccHHH
Confidence 4445555567777655433343 24568899999998888887776666631 23445555555433344
Q ss_pred HHHHHhhhcCCC
Q 014242 363 LKDYLKPYGNQY 374 (428)
Q Consensus 363 ~~~~~~~~~~~~ 374 (428)
+...++....+|
T Consensus 212 l~~lv~~~~~~~ 223 (263)
T PTZ00222 212 LKNLIRSVNARF 223 (263)
T ss_pred HHHHHHHHHHhh
Confidence 444555444444
No 76
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=20.58 E-value=1.7e+02 Score=30.54 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=46.0
Q ss_pred cEEEEeCCCCCCcc-ccccccccCCCccEEEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEccccccH
Q 014242 228 QCYLHTGDFRASRL-MQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK 304 (428)
Q Consensus 228 ~~ilytGD~~~~~~-~~~~~~l~~~~~D~Li~E~Ty~~~~~~~ps~~~~~~~l~~~i~~~l~~g~~~lvli~~~slGr 304 (428)
..|+|+||=++..- ......++..++-++=+|+....-. ..+.++....+.++|+.+-++=++..|++--||.|-
T Consensus 262 ~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRYfW~--~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGA 337 (456)
T COG3946 262 VAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRYFWS--ERTPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGA 337 (456)
T ss_pred EEEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhhhhc--cCCHHHHHHHHHHHHHHHHHhhCcceEEEEeecccc
Confidence 46999999988541 1112334567777887777644322 246677777888877766554333345444577774
Done!