Query 014243
Match_columns 428
No_of_seqs 449 out of 2589
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 08:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 7.1E-55 2.4E-59 429.2 23.9 293 114-406 1-293 (293)
2 4b4t_J 26S protease regulatory 100.0 5.2E-41 1.8E-45 343.8 22.5 177 143-335 176-360 (405)
3 4b4t_I 26S protease regulatory 100.0 4.7E-40 1.6E-44 338.4 21.2 177 143-335 210-394 (437)
4 4b4t_H 26S protease regulatory 100.0 1.5E-39 5.3E-44 337.3 22.5 209 113-335 206-421 (467)
5 4b4t_M 26S protease regulatory 100.0 5.2E-40 1.8E-44 340.1 17.2 179 143-335 209-393 (434)
6 4b4t_L 26S protease subunit RP 100.0 7.5E-40 2.6E-44 339.1 17.7 178 143-336 209-394 (437)
7 4b4t_K 26S protease regulatory 100.0 4.1E-38 1.4E-42 325.5 20.9 177 143-335 200-385 (428)
8 3cf2_A TER ATPase, transitiona 100.0 2.6E-37 8.8E-42 340.2 7.8 191 144-353 506-704 (806)
9 3cf2_A TER ATPase, transitiona 100.0 6.5E-34 2.2E-38 313.2 22.6 221 113-353 201-428 (806)
10 2ce7_A Cell division protein F 100.0 4.1E-31 1.4E-35 276.8 14.7 178 143-336 43-228 (476)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.4E-29 4.9E-34 252.1 24.1 221 113-354 9-237 (322)
12 3eie_A Vacuolar protein sortin 100.0 1.8E-29 6.1E-34 250.5 20.0 222 113-355 15-243 (322)
13 2x8a_A Nuclear valosin-contain 100.0 1.2E-29 4.1E-34 247.6 17.6 177 142-335 37-224 (274)
14 3cf0_A Transitional endoplasmi 100.0 1.9E-29 6.7E-34 248.2 19.1 176 144-335 44-227 (301)
15 2qp9_X Vacuolar protein sortin 100.0 2.5E-28 8.4E-33 246.3 21.7 274 113-407 48-350 (355)
16 2dhr_A FTSH; AAA+ protein, hex 100.0 2.7E-29 9.4E-34 264.3 11.4 286 111-417 26-326 (499)
17 1lv7_A FTSH; alpha/beta domain 100.0 3.3E-27 1.1E-31 225.7 20.1 176 144-335 40-223 (257)
18 2qz4_A Paraplegin; AAA+, SPG7, 100.0 7.4E-28 2.5E-32 229.0 14.7 176 144-335 34-220 (262)
19 3h4m_A Proteasome-activating n 99.9 1.4E-27 4.7E-32 230.8 16.0 178 144-335 46-229 (285)
20 2zan_A Vacuolar protein sortin 99.9 2E-27 6.7E-32 246.6 18.1 188 146-354 164-359 (444)
21 3hu3_A Transitional endoplasmi 99.9 1.6E-26 5.5E-31 242.8 19.8 175 144-335 233-413 (489)
22 1ixz_A ATP-dependent metallopr 99.9 1.3E-25 4.4E-30 214.3 17.2 177 143-335 43-227 (254)
23 3vfd_A Spastin; ATPase, microt 99.9 2.8E-25 9.6E-30 225.8 18.3 173 147-336 146-325 (389)
24 3b9p_A CG5977-PA, isoform A; A 99.9 2.3E-25 7.7E-30 216.7 16.7 173 147-335 52-231 (297)
25 2r62_A Cell division protease 99.9 5.3E-27 1.8E-31 225.0 4.9 208 112-335 7-224 (268)
26 3d8b_A Fidgetin-like protein 1 99.9 2.6E-25 8.9E-30 224.0 17.4 173 147-336 115-294 (357)
27 1ypw_A Transitional endoplasmi 99.9 3.3E-27 1.1E-31 261.4 3.2 176 144-335 506-689 (806)
28 1iy2_A ATP-dependent metallopr 99.9 2E-24 6.7E-29 209.4 18.3 177 143-335 67-251 (278)
29 3thg_A Ribulose bisphosphate c 99.9 4.2E-25 1.4E-29 183.0 8.9 104 297-400 4-107 (107)
30 1ypw_A Transitional endoplasmi 99.9 3.1E-22 1.1E-26 221.6 23.4 208 111-335 199-413 (806)
31 2c9o_A RUVB-like 1; hexameric 99.8 3.2E-23 1.1E-27 215.3 -2.8 176 144-336 58-259 (456)
32 1d2n_A N-ethylmaleimide-sensit 99.8 9.7E-19 3.3E-23 168.4 14.3 168 140-328 55-229 (272)
33 3syl_A Protein CBBX; photosynt 99.8 4.2E-18 1.5E-22 165.8 16.8 153 146-324 64-232 (309)
34 3m6a_A ATP-dependent protease 99.7 3.8E-18 1.3E-22 181.3 13.1 167 148-330 107-297 (543)
35 1g41_A Heat shock protein HSLU 99.7 1.6E-17 5.4E-22 172.3 9.4 134 148-307 49-188 (444)
36 1ofh_A ATP-dependent HSL prote 99.7 5.7E-17 2E-21 156.9 11.0 157 147-309 48-213 (310)
37 3hws_A ATP-dependent CLP prote 99.7 1.4E-17 4.9E-22 167.2 6.0 159 148-309 50-267 (363)
38 3uk6_A RUVB-like 2; hexameric 99.7 1.7E-15 5.7E-20 150.9 20.1 148 145-320 66-283 (368)
39 1jbk_A CLPB protein; beta barr 99.7 1.1E-16 3.7E-21 142.3 9.4 136 147-307 41-194 (195)
40 3pfi_A Holliday junction ATP-d 99.6 5.8E-15 2E-19 145.7 18.6 157 147-330 53-218 (338)
41 3u61_B DNA polymerase accessor 99.6 1.1E-14 3.6E-19 143.2 16.0 140 135-310 36-177 (324)
42 1l8q_A Chromosomal replication 99.6 4.1E-15 1.4E-19 146.5 12.2 165 134-328 23-198 (324)
43 1hqc_A RUVB; extended AAA-ATPa 99.6 7.9E-15 2.7E-19 143.4 13.0 152 148-325 37-197 (324)
44 2p65_A Hypothetical protein PF 99.6 6.2E-15 2.1E-19 131.0 11.1 126 148-299 42-187 (187)
45 3pxg_A Negative regulator of g 99.6 1.4E-14 4.9E-19 150.9 15.0 143 148-331 200-367 (468)
46 3pvs_A Replication-associated 99.6 3.3E-14 1.1E-18 147.6 16.4 127 150-313 51-180 (447)
47 4fcw_A Chaperone protein CLPB; 99.5 9E-14 3.1E-18 135.0 16.8 157 149-328 47-258 (311)
48 2z4s_A Chromosomal replication 99.5 1.9E-14 6.5E-19 148.9 11.7 166 133-329 116-296 (440)
49 1r6b_X CLPA protein; AAA+, N-t 99.5 1.2E-13 4E-18 151.5 18.2 140 148-312 206-363 (758)
50 2chg_A Replication factor C sm 99.5 1.8E-13 6.1E-18 124.2 16.5 141 151-325 40-190 (226)
51 1qvr_A CLPB protein; coiled co 99.5 3.5E-14 1.2E-18 158.1 13.7 139 148-312 190-346 (854)
52 3pxi_A Negative regulator of g 99.5 6E-14 2E-18 154.0 15.2 125 148-313 200-340 (758)
53 1um8_A ATP-dependent CLP prote 99.5 2.4E-14 8.1E-19 144.2 10.6 129 147-276 70-210 (376)
54 3te6_A Regulatory protein SIR3 99.5 1.5E-13 5.2E-18 136.8 13.8 137 147-312 43-212 (318)
55 1sxj_A Activator 1 95 kDa subu 99.5 5.3E-14 1.8E-18 148.2 10.0 153 148-327 76-240 (516)
56 1njg_A DNA polymerase III subu 99.5 3.5E-13 1.2E-17 123.3 13.7 152 148-327 44-219 (250)
57 3pxi_A Negative regulator of g 99.5 4.7E-13 1.6E-17 146.9 17.1 139 148-311 519-675 (758)
58 1r6b_X CLPA protein; AAA+, N-t 99.5 1.3E-13 4.5E-18 151.1 12.5 142 150-312 489-667 (758)
59 2qby_B CDC6 homolog 3, cell di 99.4 5.4E-13 1.8E-17 133.0 14.0 152 147-330 43-236 (384)
60 2chq_A Replication factor C sm 99.4 8.5E-13 2.9E-17 127.8 14.7 144 152-329 41-194 (319)
61 1sxj_B Activator 1 37 kDa subu 99.4 6E-13 2.1E-17 129.1 13.3 153 148-335 42-208 (323)
62 2v1u_A Cell division control p 99.4 1.8E-12 6.2E-17 128.5 15.2 154 147-326 42-236 (387)
63 1sxj_D Activator 1 41 kDa subu 99.4 1.4E-12 4.8E-17 128.4 13.9 147 151-331 60-230 (353)
64 3bos_A Putative DNA replicatio 99.4 1.9E-12 6.4E-17 119.8 12.8 157 133-330 39-208 (242)
65 1g8p_A Magnesium-chelatase 38 99.4 3.1E-13 1.1E-17 133.2 6.6 146 150-311 46-232 (350)
66 1iqp_A RFCS; clamp loader, ext 99.4 3.9E-12 1.3E-16 123.6 13.1 143 151-327 48-203 (327)
67 1a5t_A Delta prime, HOLB; zinc 99.3 7.8E-12 2.7E-16 124.3 14.6 154 147-334 22-203 (334)
68 1qvr_A CLPB protein; coiled co 99.3 1.2E-11 4E-16 137.7 16.3 143 150-312 589-771 (854)
69 1jr3_A DNA polymerase III subu 99.3 1.4E-11 4.6E-16 122.3 14.8 150 147-330 36-215 (373)
70 1in4_A RUVB, holliday junction 99.3 1.5E-11 5.1E-16 122.3 13.6 156 148-330 50-214 (334)
71 2r44_A Uncharacterized protein 99.3 2.9E-12 1E-16 126.2 8.5 141 150-313 47-200 (331)
72 2qby_A CDC6 homolog 1, cell di 99.3 2.5E-11 8.6E-16 119.9 15.2 163 147-334 43-243 (386)
73 1sxj_E Activator 1 40 kDa subu 99.3 4.7E-11 1.6E-15 118.1 16.8 149 133-316 22-211 (354)
74 3ec2_A DNA replication protein 99.3 1.1E-11 3.8E-16 111.5 11.1 102 110-224 4-112 (180)
75 2bjv_A PSP operon transcriptio 99.3 9.2E-13 3.2E-17 125.8 3.6 133 149-304 29-183 (265)
76 1fnn_A CDC6P, cell division co 99.2 4.8E-11 1.6E-15 118.6 13.9 149 151-326 46-228 (389)
77 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 6.3E-12 2.2E-16 132.3 7.4 139 150-311 42-196 (500)
78 1sxj_C Activator 1 40 kDa subu 99.2 9.9E-11 3.4E-15 116.1 15.7 145 134-315 34-186 (340)
79 3n70_A Transport activator; si 99.2 7.2E-12 2.5E-16 109.7 6.5 91 148-278 23-116 (145)
80 4akg_A Glutathione S-transfera 99.2 2.6E-11 8.9E-16 147.5 12.0 144 148-312 1266-1432(2695)
81 3f9v_A Minichromosome maintena 99.2 8.3E-13 2.8E-17 141.7 -1.6 138 151-313 329-492 (595)
82 1ojl_A Transcriptional regulat 99.2 2.5E-11 8.7E-16 119.5 7.9 132 148-304 24-179 (304)
83 2gno_A DNA polymerase III, gam 99.2 1.4E-10 4.7E-15 114.7 12.3 160 135-335 7-172 (305)
84 3co5_A Putative two-component 99.2 4.3E-12 1.5E-16 111.0 1.3 90 149-278 27-116 (143)
85 3cmw_A Protein RECA, recombina 99.1 8E-11 2.7E-15 138.1 6.9 115 148-279 1079-1219(1706)
86 2w58_A DNAI, primosome compone 99.1 5.9E-10 2E-14 101.7 10.4 106 109-225 18-128 (202)
87 2vhj_A Ntpase P4, P4; non- hyd 99.0 4.3E-10 1.5E-14 112.1 6.9 123 144-285 118-242 (331)
88 2qgz_A Helicase loader, putati 99.0 4.4E-10 1.5E-14 110.9 6.5 87 133-225 136-227 (308)
89 1tue_A Replication protein E1; 98.9 5.2E-09 1.8E-13 98.1 9.2 128 134-296 45-176 (212)
90 2kjq_A DNAA-related protein; s 98.8 3.3E-09 1.1E-13 93.8 6.6 58 148-224 35-95 (149)
91 1w5s_A Origin recognition comp 98.8 1.6E-08 5.6E-13 101.2 12.4 157 148-326 49-250 (412)
92 1svm_A Large T antigen; AAA+ f 98.8 9.9E-09 3.4E-13 104.4 9.0 120 144-299 164-284 (377)
93 2r2a_A Uncharacterized protein 98.6 1.2E-07 4.2E-12 88.0 9.2 125 148-296 4-149 (199)
94 3k1j_A LON protease, ATP-depen 98.6 3.3E-07 1.1E-11 98.1 13.1 26 150-175 61-86 (604)
95 3cmu_A Protein RECA, recombina 98.5 8E-08 2.7E-12 114.3 8.3 102 145-250 1423-1548(2050)
96 2qen_A Walker-type ATPase; unk 98.5 1.2E-06 4.1E-11 85.1 13.5 158 150-331 32-241 (350)
97 2fna_A Conserved hypothetical 98.4 6.4E-06 2.2E-10 80.1 17.3 153 150-331 31-245 (357)
98 1u0j_A DNA replication protein 98.4 8.9E-07 3E-11 85.9 10.9 42 133-175 89-130 (267)
99 4akg_A Glutathione S-transfera 98.4 1.3E-06 4.6E-11 106.8 13.0 140 149-307 645-789 (2695)
100 3vkg_A Dynein heavy chain, cyt 98.4 2.4E-07 8.4E-12 114.0 6.1 141 150-311 1305-1469(3245)
101 2cvh_A DNA repair and recombin 98.1 1.6E-05 5.3E-10 72.5 11.7 40 145-184 16-55 (220)
102 1ny5_A Transcriptional regulat 98.1 2.1E-06 7.3E-11 87.0 5.6 106 150-278 161-282 (387)
103 1ye8_A Protein THEP1, hypothet 98.0 4.8E-05 1.7E-09 68.8 11.5 27 151-177 2-28 (178)
104 3cmu_A Protein RECA, recombina 98.0 1.1E-05 3.8E-10 96.2 9.2 82 145-226 728-824 (2050)
105 3hr8_A Protein RECA; alpha and 97.9 2.5E-05 8.6E-10 78.7 9.7 83 144-226 56-153 (356)
106 3f8t_A Predicted ATPase involv 97.9 2.5E-06 8.6E-11 88.9 2.2 124 151-302 241-385 (506)
107 1qhx_A CPT, protein (chloramph 97.9 1.7E-05 5.7E-10 70.2 7.1 34 149-182 3-36 (178)
108 3dzd_A Transcriptional regulat 97.9 1.4E-05 4.7E-10 80.6 6.8 130 150-303 153-304 (368)
109 1n0w_A DNA repair protein RAD5 97.9 3.6E-05 1.2E-09 71.2 9.1 84 144-227 19-134 (243)
110 2zr9_A Protein RECA, recombina 97.9 1.5E-05 5.1E-10 79.9 6.7 83 144-226 56-153 (349)
111 1xp8_A RECA protein, recombina 97.9 5.1E-05 1.8E-09 76.6 10.6 83 144-226 69-166 (366)
112 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00011 3.7E-09 67.1 11.0 37 145-181 19-58 (235)
113 1u94_A RECA protein, recombina 97.8 2.6E-05 8.8E-10 78.5 6.5 83 144-226 58-155 (356)
114 3cmw_A Protein RECA, recombina 97.8 3.7E-05 1.3E-09 90.7 8.4 82 145-226 728-824 (1706)
115 2p5t_B PEZT; postsegregational 97.7 0.00016 5.4E-09 68.6 11.1 57 129-185 11-68 (253)
116 3kw6_A 26S protease regulatory 97.7 9.1E-05 3.1E-09 57.9 7.7 39 297-335 2-44 (78)
117 1jr3_D DNA polymerase III, del 97.7 0.00031 1.1E-08 69.1 13.2 147 147-330 16-176 (343)
118 1gvn_B Zeta; postsegregational 97.7 5.7E-05 1.9E-09 73.5 7.7 62 125-186 8-70 (287)
119 2z43_A DNA repair and recombin 97.7 7.2E-05 2.5E-09 73.7 8.4 83 144-226 102-217 (324)
120 3vkg_A Dynein heavy chain, cyt 97.7 0.00017 5.7E-09 89.4 13.2 140 149-307 604-749 (3245)
121 2rhm_A Putative kinase; P-loop 97.7 3.9E-05 1.3E-09 68.5 5.1 34 146-179 2-35 (193)
122 3trf_A Shikimate kinase, SK; a 97.6 3.8E-05 1.3E-09 68.4 4.8 33 149-181 5-37 (185)
123 2krk_A 26S protease regulatory 97.6 0.00013 4.4E-09 58.6 7.4 39 297-335 10-52 (86)
124 3io5_A Recombination and repai 97.6 0.00011 3.9E-09 73.0 8.3 83 144-227 24-126 (333)
125 2ehv_A Hypothetical protein PH 97.6 0.00024 8.3E-09 65.7 10.2 26 145-170 26-51 (251)
126 1pzn_A RAD51, DNA repair and r 97.6 0.00022 7.6E-09 71.2 9.5 82 144-225 126-244 (349)
127 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00021 7.1E-09 68.1 8.4 39 148-186 3-44 (260)
128 3lda_A DNA repair protein RAD5 97.5 0.00023 7.9E-09 72.7 9.2 83 144-226 173-287 (400)
129 3vaa_A Shikimate kinase, SK; s 97.5 7.2E-05 2.5E-09 68.0 4.9 35 147-181 23-57 (199)
130 3iij_A Coilin-interacting nucl 97.5 6.7E-05 2.3E-09 66.7 4.3 34 147-180 9-42 (180)
131 3umf_A Adenylate kinase; rossm 97.5 8.1E-05 2.8E-09 69.9 4.5 40 144-185 24-63 (217)
132 2dr3_A UPF0273 protein PH0284; 97.5 0.00057 1.9E-08 63.0 10.3 39 144-182 18-59 (247)
133 2i1q_A DNA repair and recombin 97.4 0.00023 7.8E-09 69.7 7.5 29 144-172 93-121 (322)
134 1tev_A UMP-CMP kinase; ploop, 97.4 0.00011 3.6E-09 65.4 4.5 31 149-179 3-33 (196)
135 3kb2_A SPBC2 prophage-derived 97.4 0.00012 4.1E-09 63.8 4.7 31 151-181 3-33 (173)
136 4a74_A DNA repair and recombin 97.4 0.00036 1.2E-08 63.7 8.1 30 144-173 20-49 (231)
137 2cdn_A Adenylate kinase; phosp 97.4 0.00015 5E-09 65.8 5.3 34 147-180 18-51 (201)
138 1g5t_A COB(I)alamin adenosyltr 97.4 0.00042 1.4E-08 64.1 8.4 110 151-286 30-168 (196)
139 2iyv_A Shikimate kinase, SK; t 97.4 0.00011 3.7E-09 65.5 4.2 30 151-180 4-33 (184)
140 1kag_A SKI, shikimate kinase I 97.4 0.00012 4E-09 64.4 4.2 31 149-179 4-34 (173)
141 1v5w_A DMC1, meiotic recombina 97.4 0.00035 1.2E-08 69.5 8.0 82 144-226 117-233 (343)
142 2c95_A Adenylate kinase 1; tra 97.3 0.00014 4.8E-09 65.0 4.5 33 148-180 8-40 (196)
143 1zuh_A Shikimate kinase; alpha 97.3 0.00015 5.1E-09 63.7 4.6 31 150-180 8-38 (168)
144 1zp6_A Hypothetical protein AT 97.3 0.00011 3.9E-09 65.5 3.9 40 145-184 5-44 (191)
145 1y63_A LMAJ004144AAA protein; 97.3 0.00012 4E-09 65.9 3.9 32 149-180 10-42 (184)
146 2zts_A Putative uncharacterize 97.3 0.00042 1.4E-08 63.9 7.8 38 145-182 26-67 (251)
147 1aky_A Adenylate kinase; ATP:A 97.3 0.00015 5.1E-09 66.8 4.6 33 148-180 3-35 (220)
148 1via_A Shikimate kinase; struc 97.3 0.00013 4.4E-09 64.6 4.0 29 151-179 6-34 (175)
149 1z6t_A APAF-1, apoptotic prote 97.3 0.0022 7.4E-08 67.4 14.1 24 148-171 146-169 (591)
150 1qf9_A UMP/CMP kinase, protein 97.3 0.00018 6.1E-09 63.8 4.9 33 148-180 5-37 (194)
151 1ly1_A Polynucleotide kinase; 97.3 0.0001 3.5E-09 64.7 3.3 30 149-178 2-32 (181)
152 3lw7_A Adenylate kinase relate 97.3 0.00013 4.5E-09 63.1 3.7 30 150-180 2-31 (179)
153 2vli_A Antibiotic resistance p 97.3 0.00012 4.2E-09 64.7 3.4 30 149-178 5-34 (183)
154 2bwj_A Adenylate kinase 5; pho 97.3 0.00014 4.7E-09 65.2 3.8 32 149-180 12-43 (199)
155 3cm0_A Adenylate kinase; ATP-b 97.3 0.00015 5E-09 64.5 3.8 31 149-179 4-34 (186)
156 1zd8_A GTP:AMP phosphotransfer 97.3 0.00014 4.6E-09 67.4 3.7 34 147-180 5-38 (227)
157 3t61_A Gluconokinase; PSI-biol 97.3 0.00019 6.7E-09 65.0 4.6 31 149-179 18-48 (202)
158 1ukz_A Uridylate kinase; trans 97.3 0.00018 6E-09 65.1 4.2 33 148-180 14-46 (203)
159 2r6a_A DNAB helicase, replicat 97.2 0.0013 4.4E-08 67.8 11.0 39 144-182 198-240 (454)
160 1kht_A Adenylate kinase; phosp 97.2 0.00018 6.2E-09 63.8 3.7 26 149-174 3-28 (192)
161 3tlx_A Adenylate kinase 2; str 97.2 0.0002 6.9E-09 67.5 4.2 34 147-180 27-60 (243)
162 1e6c_A Shikimate kinase; phosp 97.2 0.00023 7.7E-09 62.4 4.1 30 150-179 3-32 (173)
163 1ak2_A Adenylate kinase isoenz 97.2 0.00028 9.5E-09 65.8 4.8 33 148-180 15-47 (233)
164 2bbw_A Adenylate kinase 4, AK4 97.2 0.0003 1E-08 66.0 4.8 32 148-179 26-57 (246)
165 1g41_A Heat shock protein HSLU 97.2 0.00099 3.4E-08 68.9 9.0 90 212-308 250-346 (444)
166 2ze6_A Isopentenyl transferase 97.1 0.0003 1E-08 66.9 4.8 32 151-182 3-34 (253)
167 2q6t_A DNAB replication FORK h 97.1 0.0021 7.2E-08 66.0 11.4 39 144-182 195-237 (444)
168 3dl0_A Adenylate kinase; phosp 97.1 0.00024 8.1E-09 65.0 3.8 30 151-180 2-31 (216)
169 3fb4_A Adenylate kinase; psych 97.1 0.00026 8.8E-09 64.6 3.9 30 151-180 2-31 (216)
170 4eun_A Thermoresistant glucoki 97.1 0.00035 1.2E-08 63.5 4.6 33 147-179 27-59 (200)
171 2pt5_A Shikimate kinase, SK; a 97.1 0.00034 1.2E-08 61.0 4.3 30 151-180 2-31 (168)
172 1knq_A Gluconate kinase; ALFA/ 97.1 0.00039 1.3E-08 61.3 4.6 31 149-179 8-38 (175)
173 3be4_A Adenylate kinase; malar 97.1 0.0003 1E-08 64.8 3.9 32 149-180 5-36 (217)
174 1zak_A Adenylate kinase; ATP:A 97.1 0.00025 8.4E-09 65.4 3.3 32 148-179 4-35 (222)
175 3sr0_A Adenylate kinase; phosp 97.1 0.00036 1.2E-08 64.7 4.4 29 151-179 2-30 (206)
176 2pez_A Bifunctional 3'-phospho 97.0 0.00049 1.7E-08 61.1 4.8 36 148-183 4-42 (179)
177 3sfz_A APAF-1, apoptotic pepti 97.0 0.0052 1.8E-07 69.3 14.3 25 148-172 146-170 (1249)
178 1cke_A CK, MSSA, protein (cyti 97.0 0.00046 1.6E-08 63.2 4.7 31 149-179 5-35 (227)
179 2a5y_B CED-4; apoptosis; HET: 97.0 0.011 3.8E-07 62.1 15.7 24 148-171 151-174 (549)
180 3vlf_B 26S protease regulatory 97.0 0.0015 5E-08 52.4 6.8 38 299-336 2-43 (88)
181 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00036 1.2E-08 70.2 3.7 30 150-179 25-54 (359)
182 2z0h_A DTMP kinase, thymidylat 97.0 0.001 3.5E-08 59.3 6.3 31 151-181 2-35 (197)
183 2b8t_A Thymidine kinase; deoxy 97.0 0.00064 2.2E-08 64.0 5.1 73 150-223 13-100 (223)
184 2v54_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 61.8 4.2 34 148-181 3-37 (204)
185 3crm_A TRNA delta(2)-isopenten 97.0 0.0026 8.8E-08 63.2 9.6 36 148-183 4-39 (323)
186 2pbr_A DTMP kinase, thymidylat 96.9 0.00067 2.3E-08 60.2 4.8 31 151-181 2-35 (195)
187 1e4v_A Adenylate kinase; trans 96.9 0.00054 1.8E-08 62.8 4.2 30 151-180 2-31 (214)
188 3uie_A Adenylyl-sulfate kinase 96.9 0.0022 7.5E-08 58.1 7.7 39 147-185 23-64 (200)
189 3r20_A Cytidylate kinase; stru 96.9 0.0007 2.4E-08 64.2 4.5 32 148-179 8-39 (233)
190 2jaq_A Deoxyguanosine kinase; 96.9 0.0006 2.1E-08 61.0 3.8 29 151-179 2-30 (205)
191 1jjv_A Dephospho-COA kinase; P 96.9 0.00065 2.2E-08 61.5 4.1 29 150-179 3-31 (206)
192 1nks_A Adenylate kinase; therm 96.9 0.00041 1.4E-08 61.4 2.6 24 151-174 3-26 (194)
193 1uf9_A TT1252 protein; P-loop, 96.9 0.00077 2.6E-08 60.4 4.5 31 148-179 7-37 (203)
194 1vma_A Cell division protein F 96.9 0.0059 2E-07 60.0 11.1 71 147-221 102-195 (306)
195 3ake_A Cytidylate kinase; CMP 96.9 0.00091 3.1E-08 60.1 4.9 30 151-180 4-33 (208)
196 2xb4_A Adenylate kinase; ATP-b 96.8 0.00069 2.3E-08 62.8 4.0 30 151-180 2-31 (223)
197 2wwf_A Thymidilate kinase, put 96.8 0.00039 1.3E-08 62.9 2.2 30 148-177 9-38 (212)
198 2plr_A DTMP kinase, probable t 96.8 0.00076 2.6E-08 60.7 4.1 28 149-176 4-31 (213)
199 2if2_A Dephospho-COA kinase; a 96.8 0.00074 2.5E-08 61.0 4.0 29 151-180 3-31 (204)
200 3bh0_A DNAB-like replicative h 96.8 0.0049 1.7E-07 60.3 9.8 38 144-181 63-103 (315)
201 1nn5_A Similar to deoxythymidy 96.8 0.00047 1.6E-08 62.4 2.2 28 148-175 8-35 (215)
202 2fz4_A DNA repair protein RAD2 96.7 0.0033 1.1E-07 58.9 8.1 33 151-183 110-142 (237)
203 2qt1_A Nicotinamide riboside k 96.7 0.00081 2.8E-08 61.1 3.5 36 144-179 16-52 (207)
204 3jvv_A Twitching mobility prot 96.7 0.0017 5.9E-08 65.1 6.1 68 150-221 124-205 (356)
205 3dm5_A SRP54, signal recogniti 96.7 0.0041 1.4E-07 64.3 9.0 70 148-221 99-191 (443)
206 1vht_A Dephospho-COA kinase; s 96.7 0.0013 4.3E-08 60.2 4.6 32 148-180 3-34 (218)
207 2eyu_A Twitching motility prot 96.7 0.0014 4.8E-08 62.8 5.0 28 146-173 22-49 (261)
208 4gp7_A Metallophosphoesterase; 96.7 0.0033 1.1E-07 55.7 7.1 22 147-168 7-28 (171)
209 2orw_A Thymidine kinase; TMTK, 96.7 0.00053 1.8E-08 62.2 1.9 31 150-180 4-37 (184)
210 1m7g_A Adenylylsulfate kinase; 96.7 0.0031 1.1E-07 57.6 7.0 39 147-185 23-65 (211)
211 2r8r_A Sensor protein; KDPD, P 96.7 0.0037 1.3E-07 59.1 7.6 33 149-181 6-41 (228)
212 1q57_A DNA primase/helicase; d 96.6 0.0067 2.3E-07 63.1 10.3 38 145-182 238-279 (503)
213 1uj2_A Uridine-cytidine kinase 96.6 0.0013 4.5E-08 61.9 4.4 40 147-186 20-67 (252)
214 2h92_A Cytidylate kinase; ross 96.6 0.0013 4.3E-08 60.1 4.1 32 149-180 3-34 (219)
215 1q3t_A Cytidylate kinase; nucl 96.6 0.0016 5.4E-08 60.7 4.8 33 147-179 14-46 (236)
216 3a8t_A Adenylate isopentenyltr 96.6 0.0043 1.5E-07 62.0 8.1 35 148-182 39-73 (339)
217 4e22_A Cytidylate kinase; P-lo 96.6 0.0016 5.4E-08 61.7 4.7 31 149-179 27-57 (252)
218 3bgw_A DNAB-like replicative h 96.6 0.0079 2.7E-07 62.0 10.3 39 144-182 192-233 (444)
219 3zvl_A Bifunctional polynucleo 96.6 0.0015 5.1E-08 66.7 4.8 36 148-185 257-292 (416)
220 2axn_A 6-phosphofructo-2-kinas 96.6 0.0028 9.4E-08 66.8 6.7 37 148-184 34-73 (520)
221 2yvu_A Probable adenylyl-sulfa 96.6 0.002 7E-08 57.3 4.9 36 147-182 11-49 (186)
222 2grj_A Dephospho-COA kinase; T 96.5 0.0016 5.4E-08 59.6 4.1 33 149-181 12-44 (192)
223 3nwj_A ATSK2; P loop, shikimat 96.5 0.0015 5.1E-08 62.4 4.1 32 149-180 48-79 (250)
224 3aji_B S6C, proteasome (prosom 96.5 0.0043 1.5E-07 48.7 5.9 37 299-335 2-42 (83)
225 1ltq_A Polynucleotide kinase; 96.5 0.0014 4.9E-08 62.9 3.6 30 149-178 2-32 (301)
226 2f6r_A COA synthase, bifunctio 96.5 0.0018 6.2E-08 62.4 4.3 32 148-180 74-105 (281)
227 1rz3_A Hypothetical protein rb 96.4 0.0065 2.2E-07 55.1 7.5 36 146-181 19-57 (201)
228 2j41_A Guanylate kinase; GMP, 96.4 0.0019 6.5E-08 58.0 3.8 27 147-173 4-30 (207)
229 2ewv_A Twitching motility prot 96.4 0.003 1E-07 63.5 5.5 28 146-173 133-160 (372)
230 2qor_A Guanylate kinase; phosp 96.3 0.002 6.8E-08 58.6 3.5 28 147-174 10-37 (204)
231 3kl4_A SRP54, signal recogniti 96.3 0.0063 2.2E-07 62.7 7.5 35 148-182 96-133 (433)
232 3foz_A TRNA delta(2)-isopenten 96.3 0.0027 9.2E-08 62.8 4.5 37 147-183 8-44 (316)
233 3c8u_A Fructokinase; YP_612366 96.3 0.0038 1.3E-07 56.9 5.2 29 146-174 19-47 (208)
234 3asz_A Uridine kinase; cytidin 96.3 0.0022 7.6E-08 58.1 3.6 33 147-179 4-38 (211)
235 2c9o_A RUVB-like 1; hexameric 96.3 0.018 6.3E-07 59.0 10.8 71 213-312 296-380 (456)
236 2iut_A DNA translocase FTSK; n 96.2 0.049 1.7E-06 57.9 13.8 71 214-307 345-419 (574)
237 3fdi_A Uncharacterized protein 96.2 0.0036 1.2E-07 57.4 4.4 30 150-179 7-36 (201)
238 1tf7_A KAIC; homohexamer, hexa 96.2 0.023 7.8E-07 59.5 11.0 38 145-182 35-76 (525)
239 2bdt_A BH3686; alpha-beta prot 96.2 0.0037 1.3E-07 55.7 4.2 26 150-175 3-28 (189)
240 3tau_A Guanylate kinase, GMP k 96.1 0.003 1E-07 57.7 3.7 28 148-175 7-34 (208)
241 4a1f_A DNAB helicase, replicat 96.1 0.0052 1.8E-07 61.3 5.7 38 145-182 42-82 (338)
242 3tr0_A Guanylate kinase, GMP k 96.1 0.0035 1.2E-07 56.2 4.0 33 148-182 6-38 (205)
243 1kgd_A CASK, peripheral plasma 96.1 0.0036 1.2E-07 55.8 4.0 26 149-174 5-30 (180)
244 3tqc_A Pantothenate kinase; bi 96.1 0.0072 2.4E-07 59.8 6.5 39 136-174 79-117 (321)
245 3gmt_A Adenylate kinase; ssgci 96.1 0.0029 1E-07 59.8 3.4 30 151-180 10-39 (230)
246 3d3q_A TRNA delta(2)-isopenten 96.0 0.0042 1.4E-07 62.1 4.1 33 149-181 7-39 (340)
247 1sq5_A Pantothenate kinase; P- 96.0 0.0089 3E-07 58.3 6.4 37 138-174 69-105 (308)
248 2j37_W Signal recognition part 95.9 0.017 6E-07 60.5 8.7 36 147-182 99-137 (504)
249 3a00_A Guanylate kinase, GMP k 95.9 0.0041 1.4E-07 55.7 3.3 26 149-174 1-26 (186)
250 1x6v_B Bifunctional 3'-phospho 95.9 0.016 5.4E-07 62.4 8.2 38 148-185 51-91 (630)
251 2jeo_A Uridine-cytidine kinase 95.9 0.0056 1.9E-07 57.3 4.1 32 145-176 21-52 (245)
252 3exa_A TRNA delta(2)-isopenten 95.9 0.0049 1.7E-07 61.1 3.9 34 149-182 3-36 (322)
253 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0082 2.8E-07 59.4 5.2 71 149-223 171-251 (330)
254 1odf_A YGR205W, hypothetical 3 95.8 0.013 4.3E-07 57.0 6.5 30 145-174 27-56 (290)
255 4f4c_A Multidrug resistance pr 95.8 0.035 1.2E-06 64.6 11.1 31 145-175 440-470 (1321)
256 1sky_E F1-ATPase, F1-ATP synth 95.7 0.014 4.7E-07 60.8 6.9 24 150-173 152-175 (473)
257 3hdt_A Putative kinase; struct 95.7 0.0069 2.4E-07 56.7 4.0 31 149-179 14-44 (223)
258 3eph_A TRNA isopentenyltransfe 95.6 0.0082 2.8E-07 61.4 4.7 34 148-181 1-34 (409)
259 4eaq_A DTMP kinase, thymidylat 95.6 0.0086 3E-07 55.9 4.4 33 147-179 24-58 (229)
260 1znw_A Guanylate kinase, GMP k 95.5 0.0081 2.8E-07 54.6 3.9 30 145-174 16-45 (207)
261 3ice_A Transcription terminati 95.5 0.022 7.5E-07 58.1 7.2 76 149-224 174-273 (422)
262 1gtv_A TMK, thymidylate kinase 95.5 0.0041 1.4E-07 56.1 1.7 25 151-175 2-26 (214)
263 1nlf_A Regulatory protein REPA 95.5 0.0065 2.2E-07 57.9 3.1 29 145-173 26-54 (279)
264 1lvg_A Guanylate kinase, GMP k 95.4 0.0074 2.5E-07 54.8 3.2 27 148-174 3-29 (198)
265 2qmh_A HPR kinase/phosphorylas 95.4 0.0074 2.5E-07 56.1 3.1 32 149-181 34-65 (205)
266 1cr0_A DNA primase/helicase; R 95.4 0.0091 3.1E-07 57.2 3.8 38 144-181 30-71 (296)
267 1z6g_A Guanylate kinase; struc 95.3 0.0087 3E-07 55.3 3.3 28 146-173 20-47 (218)
268 2gks_A Bifunctional SAT/APS ki 95.3 0.026 8.9E-07 59.7 7.4 60 125-185 349-411 (546)
269 1ex7_A Guanylate kinase; subst 95.3 0.016 5.6E-07 52.7 5.0 26 152-177 4-29 (186)
270 3upu_A ATP-dependent DNA helic 95.3 0.018 6E-07 59.2 5.8 23 151-173 47-69 (459)
271 1bif_A 6-phosphofructo-2-kinas 95.3 0.023 7.9E-07 58.6 6.7 30 147-176 37-66 (469)
272 1a7j_A Phosphoribulokinase; tr 95.3 0.0068 2.3E-07 58.8 2.5 37 149-185 5-44 (290)
273 1htw_A HI0065; nucleotide-bind 95.3 0.013 4.5E-07 51.8 4.1 29 145-173 29-57 (158)
274 3ney_A 55 kDa erythrocyte memb 95.2 0.017 5.9E-07 53.2 4.9 27 148-174 18-44 (197)
275 1g8f_A Sulfate adenylyltransfe 95.2 0.013 4.5E-07 61.5 4.7 52 123-175 370-421 (511)
276 3e70_C DPA, signal recognition 95.2 0.049 1.7E-06 53.9 8.5 27 147-173 127-153 (328)
277 2xxa_A Signal recognition part 95.2 0.053 1.8E-06 55.7 9.0 37 147-183 98-138 (433)
278 3thx_B DNA mismatch repair pro 95.2 0.082 2.8E-06 59.3 11.1 25 147-171 671-695 (918)
279 2ocp_A DGK, deoxyguanosine kin 95.2 0.013 4.6E-07 54.4 4.1 27 149-175 2-29 (241)
280 1ls1_A Signal recognition part 95.1 0.06 2E-06 52.2 8.8 32 148-179 97-131 (295)
281 4b3f_X DNA-binding protein smu 95.1 0.035 1.2E-06 59.5 7.7 33 151-183 207-242 (646)
282 3aez_A Pantothenate kinase; tr 95.1 0.014 4.8E-07 57.3 4.2 29 146-174 87-115 (312)
283 1j8m_F SRP54, signal recogniti 95.1 0.049 1.7E-06 53.0 8.0 34 149-182 98-134 (297)
284 1m8p_A Sulfate adenylyltransfe 95.1 0.049 1.7E-06 57.9 8.6 39 147-185 394-436 (573)
285 2dzn_B 26S protease regulatory 95.1 0.0054 1.8E-07 48.3 0.9 35 301-335 1-39 (82)
286 3lnc_A Guanylate kinase, GMP k 95.0 0.0076 2.6E-07 55.6 1.7 28 146-173 24-52 (231)
287 1p5z_B DCK, deoxycytidine kina 95.0 0.0065 2.2E-07 57.4 1.3 31 147-177 22-53 (263)
288 3b9q_A Chloroplast SRP recepto 94.9 0.034 1.2E-06 54.3 6.4 28 146-173 97-124 (302)
289 1w4r_A Thymidine kinase; type 94.9 0.036 1.2E-06 51.1 6.2 36 148-183 19-57 (195)
290 3thx_A DNA mismatch repair pro 94.9 0.12 4E-06 58.2 11.5 22 150-171 663-684 (934)
291 2v9p_A Replication protein E1; 94.9 0.017 6E-07 56.7 4.3 29 145-173 122-150 (305)
292 2ius_A DNA translocase FTSK; n 94.9 0.15 5.2E-06 53.5 11.6 40 267-308 331-374 (512)
293 3p32_A Probable GTPase RV1496/ 94.9 0.086 2.9E-06 52.2 9.3 32 148-179 78-112 (355)
294 3v9p_A DTMP kinase, thymidylat 94.8 0.044 1.5E-06 51.4 6.4 34 148-181 24-64 (227)
295 1wb9_A DNA mismatch repair pro 94.7 0.13 4.4E-06 56.9 11.0 24 149-172 607-630 (800)
296 2oap_1 GSPE-2, type II secreti 94.7 0.016 5.4E-07 60.9 3.4 70 149-222 260-343 (511)
297 1c9k_A COBU, adenosylcobinamid 94.6 0.018 6.3E-07 52.3 3.4 32 152-184 2-33 (180)
298 1s96_A Guanylate kinase, GMP k 94.6 0.021 7.2E-07 53.1 3.8 28 147-174 14-41 (219)
299 3lxw_A GTPase IMAP family memb 94.6 0.046 1.6E-06 51.3 6.2 25 148-172 20-44 (247)
300 2i3b_A HCR-ntpase, human cance 94.6 0.019 6.5E-07 52.2 3.4 23 151-173 3-25 (189)
301 1vt4_I APAF-1 related killer D 94.5 0.032 1.1E-06 63.5 5.4 24 149-172 150-173 (1221)
302 2og2_A Putative signal recogni 94.5 0.052 1.8E-06 54.4 6.5 28 146-173 154-181 (359)
303 1p9r_A General secretion pathw 94.5 0.036 1.2E-06 56.7 5.4 26 150-175 168-193 (418)
304 1rj9_A FTSY, signal recognitio 94.5 0.028 9.5E-07 55.0 4.4 26 148-173 101-126 (304)
305 4i1u_A Dephospho-COA kinase; s 94.4 0.028 9.5E-07 52.3 4.1 31 150-181 10-40 (210)
306 1np6_A Molybdopterin-guanine d 94.3 0.029 9.9E-07 50.4 3.9 26 148-173 5-30 (174)
307 3tqf_A HPR(Ser) kinase; transf 94.3 0.031 1.1E-06 50.8 4.0 30 149-179 16-45 (181)
308 2yhs_A FTSY, cell division pro 94.2 0.07 2.4E-06 55.9 7.0 29 145-173 289-317 (503)
309 3kta_A Chromosome segregation 94.2 0.03 1E-06 49.3 3.6 26 150-175 27-52 (182)
310 3e1s_A Exodeoxyribonuclease V, 94.2 0.025 8.6E-07 60.1 3.7 34 149-182 204-240 (574)
311 3tmk_A Thymidylate kinase; pho 94.1 0.051 1.8E-06 50.5 5.3 32 148-179 4-35 (216)
312 1xjc_A MOBB protein homolog; s 94.0 0.036 1.2E-06 49.8 3.7 33 149-181 4-39 (169)
313 2onk_A Molybdate/tungstate ABC 93.9 0.029 9.8E-07 53.0 3.1 29 145-174 21-49 (240)
314 2px0_A Flagellar biosynthesis 93.9 0.036 1.2E-06 53.9 3.8 35 148-182 104-142 (296)
315 2cbz_A Multidrug resistance-as 93.8 0.027 9.4E-07 52.8 2.8 28 146-173 28-55 (237)
316 4edh_A DTMP kinase, thymidylat 93.8 0.041 1.4E-06 50.9 3.9 33 149-181 6-41 (213)
317 3vkw_A Replicase large subunit 93.8 0.11 3.9E-06 53.5 7.6 26 147-172 159-184 (446)
318 3tif_A Uncharacterized ABC tra 93.7 0.029 9.8E-07 52.6 2.8 28 147-174 29-56 (235)
319 1ewq_A DNA mismatch repair pro 93.7 0.13 4.6E-06 56.4 8.4 23 150-172 577-599 (765)
320 2pcj_A ABC transporter, lipopr 93.7 0.024 8.1E-07 52.8 2.0 28 147-174 28-55 (224)
321 2ffh_A Protein (FFH); SRP54, s 93.6 0.17 5.7E-06 51.9 8.4 34 148-181 97-133 (425)
322 1b0u_A Histidine permease; ABC 93.6 0.032 1.1E-06 53.3 2.7 28 147-174 30-57 (262)
323 2f1r_A Molybdopterin-guanine d 93.5 0.035 1.2E-06 49.7 2.8 25 150-174 3-27 (171)
324 2gk6_A Regulator of nonsense t 93.5 0.036 1.2E-06 59.3 3.3 33 151-183 197-233 (624)
325 1zu4_A FTSY; GTPase, signal re 93.5 0.051 1.7E-06 53.5 4.1 36 146-181 102-140 (320)
326 3lv8_A DTMP kinase, thymidylat 93.4 0.047 1.6E-06 51.5 3.7 26 148-173 26-51 (236)
327 3k53_A Ferrous iron transport 93.4 0.13 4.6E-06 48.5 6.9 23 150-172 4-26 (271)
328 3fvq_A Fe(3+) IONS import ATP- 93.4 0.038 1.3E-06 55.5 3.1 27 147-173 28-54 (359)
329 1mv5_A LMRA, multidrug resista 93.4 0.035 1.2E-06 52.2 2.7 28 146-173 25-52 (243)
330 2zu0_C Probable ATP-dependent 93.4 0.042 1.4E-06 52.6 3.3 27 146-172 43-69 (267)
331 3d31_A Sulfate/molybdate ABC t 93.3 0.04 1.4E-06 55.0 3.1 27 147-173 24-50 (348)
332 3b85_A Phosphate starvation-in 93.3 0.034 1.1E-06 51.3 2.3 24 149-172 22-45 (208)
333 3cr8_A Sulfate adenylyltranfer 93.2 0.039 1.3E-06 58.5 3.1 29 146-174 366-394 (552)
334 2ghi_A Transport protein; mult 93.2 0.039 1.3E-06 52.6 2.8 28 146-173 43-70 (260)
335 2f9l_A RAB11B, member RAS onco 93.2 0.048 1.6E-06 48.6 3.2 23 150-172 6-28 (199)
336 2olj_A Amino acid ABC transpor 93.2 0.039 1.3E-06 52.8 2.7 29 146-174 47-75 (263)
337 1lw7_A Transcriptional regulat 93.2 0.056 1.9E-06 53.6 4.0 28 149-176 170-197 (365)
338 2yyz_A Sugar ABC transporter, 93.2 0.045 1.6E-06 54.9 3.3 27 147-173 27-53 (359)
339 1g6h_A High-affinity branched- 93.2 0.034 1.2E-06 52.8 2.3 27 147-173 31-57 (257)
340 2d2e_A SUFC protein; ABC-ATPas 93.2 0.041 1.4E-06 52.0 2.8 26 147-172 27-52 (250)
341 2ixe_A Antigen peptide transpo 93.2 0.04 1.4E-06 52.9 2.8 29 146-174 42-70 (271)
342 3ch4_B Pmkase, phosphomevalona 93.1 0.046 1.6E-06 50.6 3.0 30 146-175 8-37 (202)
343 2it1_A 362AA long hypothetical 93.1 0.046 1.6E-06 54.9 3.3 27 147-173 27-53 (362)
344 3rlf_A Maltose/maltodextrin im 93.1 0.046 1.6E-06 55.3 3.3 27 147-173 27-53 (381)
345 1nrj_B SR-beta, signal recogni 93.1 0.064 2.2E-06 48.2 3.9 25 149-173 12-36 (218)
346 3ld9_A DTMP kinase, thymidylat 93.1 0.066 2.3E-06 50.1 4.1 32 148-179 20-55 (223)
347 1oix_A RAS-related protein RAB 93.0 0.048 1.7E-06 48.4 3.0 24 150-173 30-53 (191)
348 1ji0_A ABC transporter; ATP bi 93.0 0.037 1.3E-06 52.0 2.3 27 148-174 31-57 (240)
349 1v43_A Sugar-binding transport 93.0 0.049 1.7E-06 54.9 3.3 27 147-173 35-61 (372)
350 2ff7_A Alpha-hemolysin translo 93.0 0.037 1.3E-06 52.3 2.3 28 147-174 33-60 (247)
351 1oxx_K GLCV, glucose, ABC tran 93.0 0.041 1.4E-06 55.0 2.7 27 147-173 29-55 (353)
352 2pze_A Cystic fibrosis transme 93.0 0.038 1.3E-06 51.6 2.2 27 147-173 32-58 (229)
353 1z2a_A RAS-related protein RAB 93.0 0.057 1.9E-06 45.7 3.2 24 149-172 5-28 (168)
354 2dyk_A GTP-binding protein; GT 92.9 0.058 2E-06 45.5 3.2 22 151-172 3-24 (161)
355 2yz2_A Putative ABC transporte 92.9 0.047 1.6E-06 52.2 2.8 27 147-173 31-57 (266)
356 1vpl_A ABC transporter, ATP-bi 92.9 0.047 1.6E-06 52.0 2.7 28 146-173 38-65 (256)
357 1z47_A CYSA, putative ABC-tran 92.9 0.045 1.6E-06 54.8 2.8 27 147-173 39-65 (355)
358 2ged_A SR-beta, signal recogni 92.9 0.073 2.5E-06 46.6 3.9 27 147-173 46-72 (193)
359 3gfo_A Cobalt import ATP-bindi 92.8 0.04 1.4E-06 53.1 2.2 27 147-173 32-58 (275)
360 1sgw_A Putative ABC transporte 92.8 0.036 1.2E-06 51.5 1.8 26 148-173 34-59 (214)
361 1w36_D RECD, exodeoxyribonucle 92.8 0.059 2E-06 57.6 3.7 25 149-173 164-188 (608)
362 1g29_1 MALK, maltose transport 92.7 0.048 1.6E-06 54.9 2.8 26 148-173 28-53 (372)
363 4g1u_C Hemin import ATP-bindin 92.7 0.043 1.5E-06 52.5 2.2 27 147-173 35-61 (266)
364 4f4c_A Multidrug resistance pr 92.6 0.25 8.5E-06 57.5 8.9 28 146-173 1102-1129(1321)
365 2qi9_C Vitamin B12 import ATP- 92.6 0.044 1.5E-06 52.0 2.2 27 147-173 24-50 (249)
366 2p67_A LAO/AO transport system 92.6 0.3 1E-05 48.0 8.4 27 147-173 54-80 (341)
367 2ce2_X GTPase HRAS; signaling 92.6 0.064 2.2E-06 45.0 3.0 23 150-172 4-26 (166)
368 3l0o_A Transcription terminati 92.6 0.32 1.1E-05 49.6 8.5 24 150-173 176-199 (427)
369 2ihy_A ABC transporter, ATP-bi 92.5 0.046 1.6E-06 52.7 2.2 27 147-173 45-71 (279)
370 1tf7_A KAIC; homohexamer, hexa 92.5 0.055 1.9E-06 56.6 3.0 37 145-181 277-316 (525)
371 2nq2_C Hypothetical ABC transp 92.5 0.047 1.6E-06 51.8 2.2 27 147-173 29-55 (253)
372 2v3c_C SRP54, signal recogniti 92.5 0.047 1.6E-06 56.1 2.4 35 148-182 98-135 (432)
373 2vp4_A Deoxynucleoside kinase; 92.5 0.077 2.6E-06 49.0 3.6 26 147-172 18-43 (230)
374 1kao_A RAP2A; GTP-binding prot 92.5 0.072 2.4E-06 44.8 3.2 23 150-172 4-26 (167)
375 2o8b_B DNA mismatch repair pro 92.5 0.58 2E-05 53.0 11.4 22 149-170 789-810 (1022)
376 4tmk_A Protein (thymidylate ki 92.5 0.079 2.7E-06 49.0 3.7 25 149-173 3-27 (213)
377 1u8z_A RAS-related protein RAL 92.5 0.073 2.5E-06 44.8 3.2 24 149-172 4-27 (168)
378 1upt_A ARL1, ADP-ribosylation 92.4 0.095 3.2E-06 44.5 3.9 25 148-172 6-30 (171)
379 3gd7_A Fusion complex of cysti 92.4 0.063 2.1E-06 54.4 3.1 27 146-172 44-70 (390)
380 3sop_A Neuronal-specific septi 92.4 0.069 2.4E-06 51.2 3.2 23 151-173 4-26 (270)
381 1ek0_A Protein (GTP-binding pr 92.4 0.076 2.6E-06 44.9 3.2 23 150-172 4-26 (170)
382 2zej_A Dardarin, leucine-rich 92.3 0.059 2E-06 47.3 2.5 21 151-171 4-24 (184)
383 1yrb_A ATP(GTP)binding protein 92.3 0.15 5.2E-06 47.2 5.4 35 147-181 12-48 (262)
384 2wji_A Ferrous iron transport 92.2 0.076 2.6E-06 45.7 3.0 23 150-172 4-26 (165)
385 1ky3_A GTP-binding protein YPT 92.2 0.08 2.8E-06 45.4 3.2 25 148-172 7-31 (182)
386 1z0j_A RAB-22, RAS-related pro 92.2 0.081 2.8E-06 44.8 3.2 25 149-173 6-30 (170)
387 2qm8_A GTPase/ATPase; G protei 92.2 0.096 3.3E-06 51.7 4.1 28 146-173 52-79 (337)
388 2xtp_A GTPase IMAP family memb 92.2 0.29 9.9E-06 45.5 7.3 25 148-172 21-45 (260)
389 1wms_A RAB-9, RAB9, RAS-relate 92.2 0.081 2.8E-06 45.3 3.2 24 149-172 7-30 (177)
390 2wjy_A Regulator of nonsense t 92.2 0.069 2.4E-06 59.0 3.3 23 151-173 373-395 (800)
391 2xau_A PRE-mRNA-splicing facto 92.1 0.1 3.5E-06 57.4 4.6 23 150-172 110-132 (773)
392 2nzj_A GTP-binding protein REM 92.1 0.083 2.8E-06 45.1 3.1 24 149-172 4-27 (175)
393 1g16_A RAS-related protein SEC 92.1 0.08 2.7E-06 44.9 3.0 23 150-172 4-26 (170)
394 1z08_A RAS-related protein RAB 92.1 0.084 2.9E-06 44.8 3.1 24 149-172 6-29 (170)
395 2wsm_A Hydrogenase expression/ 92.1 0.095 3.3E-06 47.2 3.6 27 149-175 30-56 (221)
396 3b1v_A Ferrous iron uptake tra 92.1 0.25 8.6E-06 47.2 6.8 23 150-172 4-26 (272)
397 3bc1_A RAS-related protein RAB 92.0 0.088 3E-06 45.6 3.2 25 148-172 10-34 (195)
398 1r2q_A RAS-related protein RAB 92.0 0.089 3.1E-06 44.5 3.2 24 149-172 6-29 (170)
399 3a1s_A Iron(II) transport prot 92.0 0.24 8.1E-06 46.8 6.5 23 150-172 6-28 (258)
400 2lkc_A Translation initiation 92.0 0.11 3.7E-06 44.6 3.8 25 148-172 7-31 (178)
401 4hlc_A DTMP kinase, thymidylat 91.9 0.16 5.5E-06 46.5 5.1 32 150-181 3-36 (205)
402 1r8s_A ADP-ribosylation factor 91.9 0.097 3.3E-06 44.3 3.3 22 151-172 2-23 (164)
403 3clv_A RAB5 protein, putative; 91.9 0.11 3.8E-06 45.1 3.7 25 148-172 6-30 (208)
404 2bbs_A Cystic fibrosis transme 91.9 0.07 2.4E-06 51.8 2.6 28 146-173 61-88 (290)
405 1c1y_A RAS-related protein RAP 91.8 0.095 3.2E-06 44.3 3.2 23 150-172 4-26 (167)
406 2atv_A RERG, RAS-like estrogen 91.8 0.11 3.8E-06 45.8 3.7 25 148-172 27-51 (196)
407 2x77_A ADP-ribosylation factor 91.8 0.091 3.1E-06 45.9 3.1 31 141-171 14-44 (189)
408 2erx_A GTP-binding protein DI- 91.8 0.091 3.1E-06 44.5 3.0 23 150-172 4-26 (172)
409 4dcu_A GTP-binding protein ENG 91.8 0.59 2E-05 47.7 9.6 22 151-172 25-46 (456)
410 2pjz_A Hypothetical protein ST 91.8 0.073 2.5E-06 50.9 2.6 25 149-173 30-54 (263)
411 1dek_A Deoxynucleoside monopho 91.8 0.07 2.4E-06 50.6 2.4 27 151-177 3-29 (241)
412 3q85_A GTP-binding protein REM 91.8 0.092 3.2E-06 44.6 3.0 21 151-171 4-24 (169)
413 3g5u_A MCG1178, multidrug resi 91.7 0.33 1.1E-05 56.3 8.4 110 146-284 413-591 (1284)
414 2y8e_A RAB-protein 6, GH09086P 91.7 0.095 3.2E-06 44.8 3.0 23 150-172 15-37 (179)
415 1z0f_A RAB14, member RAS oncog 91.6 0.1 3.5E-06 44.6 3.2 24 149-172 15-38 (179)
416 2wjg_A FEOB, ferrous iron tran 91.6 0.097 3.3E-06 45.5 3.0 23 150-172 8-30 (188)
417 3q72_A GTP-binding protein RAD 91.6 0.087 3E-06 44.6 2.7 21 151-171 4-24 (166)
418 3nh6_A ATP-binding cassette SU 91.6 0.077 2.6E-06 52.0 2.6 28 146-173 77-104 (306)
419 3i8s_A Ferrous iron transport 91.5 0.45 1.5E-05 45.2 7.8 24 149-172 3-26 (274)
420 1pui_A ENGB, probable GTP-bind 91.5 0.053 1.8E-06 48.3 1.2 27 146-172 23-49 (210)
421 2hxs_A RAB-26, RAS-related pro 91.5 0.098 3.4E-06 44.9 2.9 24 149-172 6-29 (178)
422 2a9k_A RAS-related protein RAL 91.5 0.11 3.7E-06 44.8 3.2 24 149-172 18-41 (187)
423 3iby_A Ferrous iron transport 91.5 0.32 1.1E-05 45.9 6.7 22 151-172 3-24 (256)
424 2gza_A Type IV secretion syste 91.5 0.06 2.1E-06 53.7 1.7 26 149-174 175-200 (361)
425 1f2t_A RAD50 ABC-ATPase; DNA d 91.5 0.11 3.9E-06 44.9 3.3 25 149-173 23-47 (149)
426 2hf9_A Probable hydrogenase ni 91.4 0.13 4.5E-06 46.4 3.8 26 149-174 38-63 (226)
427 3con_A GTPase NRAS; structural 91.4 0.11 3.7E-06 45.3 3.2 24 149-172 21-44 (190)
428 4dsu_A GTPase KRAS, isoform 2B 91.4 0.11 3.8E-06 44.9 3.2 24 149-172 4-27 (189)
429 2npi_A Protein CLP1; CLP1-PCF1 91.3 0.1 3.4E-06 54.1 3.3 26 148-173 137-162 (460)
430 2xzl_A ATP-dependent helicase 91.3 0.098 3.4E-06 57.8 3.4 33 151-183 377-413 (802)
431 1m7b_A RND3/RHOE small GTP-bin 91.3 0.11 3.7E-06 45.4 3.0 25 148-172 6-30 (184)
432 2oil_A CATX-8, RAS-related pro 91.3 0.11 3.9E-06 45.4 3.2 25 148-172 24-48 (193)
433 2dpy_A FLII, flagellum-specifi 91.3 0.17 5.8E-06 51.9 4.9 31 146-176 154-184 (438)
434 2fn4_A P23, RAS-related protei 91.3 0.11 3.7E-06 44.5 3.0 24 149-172 9-32 (181)
435 2efe_B Small GTP-binding prote 91.3 0.11 3.9E-06 44.5 3.1 24 149-172 12-35 (181)
436 3tw8_B RAS-related protein RAB 91.3 0.1 3.5E-06 44.7 2.8 24 149-172 9-32 (181)
437 3tui_C Methionine import ATP-b 91.3 0.11 3.6E-06 52.4 3.3 27 147-173 52-78 (366)
438 2bme_A RAB4A, RAS-related prot 91.2 0.11 3.8E-06 45.0 3.0 24 149-172 10-33 (186)
439 2r9v_A ATP synthase subunit al 91.2 0.29 1E-05 51.2 6.6 28 151-178 177-205 (515)
440 2qe7_A ATP synthase subunit al 91.2 0.31 1.1E-05 50.9 6.8 28 151-178 164-192 (502)
441 2obl_A ESCN; ATPase, hydrolase 91.2 0.15 5.3E-06 50.6 4.3 29 148-176 70-98 (347)
442 3hjn_A DTMP kinase, thymidylat 91.2 0.2 6.9E-06 45.5 4.8 32 152-183 3-37 (197)
443 3t1o_A Gliding protein MGLA; G 91.1 0.12 4E-06 45.0 3.0 25 149-173 14-38 (198)
444 3bwd_D RAC-like GTP-binding pr 91.1 0.15 5.2E-06 43.8 3.7 24 149-172 8-31 (182)
445 3kkq_A RAS-related protein M-R 91.0 0.13 4.3E-06 44.6 3.2 24 149-172 18-41 (183)
446 1mh1_A RAC1; GTP-binding, GTPa 91.0 0.13 4.4E-06 44.3 3.2 23 150-172 6-28 (186)
447 2gj8_A MNME, tRNA modification 91.0 0.13 4.5E-06 44.7 3.2 24 149-172 4-27 (172)
448 2g6b_A RAS-related protein RAB 90.9 0.13 4.5E-06 44.1 3.2 25 148-172 9-33 (180)
449 3tkl_A RAS-related protein RAB 90.9 0.13 4.5E-06 44.9 3.2 25 148-172 15-39 (196)
450 1svi_A GTP-binding protein YSX 90.8 0.15 5E-06 44.6 3.4 24 149-172 23-46 (195)
451 2gf9_A RAS-related protein RAB 90.8 0.14 4.7E-06 44.9 3.2 24 149-172 22-45 (189)
452 2cxx_A Probable GTP-binding pr 90.7 0.12 4.1E-06 44.8 2.7 22 151-172 3-24 (190)
453 2iwr_A Centaurin gamma 1; ANK 90.7 0.12 4.1E-06 44.5 2.7 24 149-172 7-30 (178)
454 1ko7_A HPR kinase/phosphatase; 90.7 0.16 5.4E-06 50.1 3.8 29 149-178 144-172 (314)
455 1moz_A ARL1, ADP-ribosylation 90.7 0.16 5.5E-06 43.8 3.5 25 147-171 16-40 (183)
456 3dz8_A RAS-related protein RAB 90.6 0.14 4.8E-06 44.9 3.2 25 149-173 23-47 (191)
457 3pqc_A Probable GTP-binding pr 90.6 0.11 3.8E-06 45.2 2.4 23 150-172 24-46 (195)
458 1m2o_B GTP-binding protein SAR 90.6 0.15 5E-06 45.1 3.2 24 149-172 23-46 (190)
459 1x3s_A RAS-related protein RAB 90.6 0.15 5E-06 44.4 3.2 24 149-172 15-38 (195)
460 1knx_A Probable HPR(Ser) kinas 90.5 0.15 5.1E-06 50.2 3.5 30 149-179 147-176 (312)
461 2nr8_A Kinesin-like protein KI 90.5 0.23 7.9E-06 49.7 4.9 76 110-204 70-145 (358)
462 2p5s_A RAS and EF-hand domain 90.5 0.17 5.8E-06 44.8 3.6 26 147-172 26-51 (199)
463 3c5c_A RAS-like protein 12; GD 90.5 0.15 5.1E-06 44.9 3.2 24 149-172 21-44 (187)
464 1ksh_A ARF-like protein 2; sma 90.5 0.16 5.6E-06 44.1 3.4 26 147-172 16-41 (186)
465 3b6e_A Interferon-induced heli 90.4 0.2 6.9E-06 44.5 4.0 24 150-173 49-72 (216)
466 3t5g_A GTP-binding protein RHE 90.4 0.15 5E-06 44.0 3.0 24 149-172 6-29 (181)
467 2fg5_A RAB-22B, RAS-related pr 90.4 0.14 4.9E-06 45.0 3.0 25 148-172 22-46 (192)
468 2bov_A RAla, RAS-related prote 90.3 0.16 5.4E-06 44.7 3.2 24 149-172 14-37 (206)
469 1z06_A RAS-related protein RAB 90.3 0.16 5.4E-06 44.4 3.2 24 149-172 20-43 (189)
470 2a5j_A RAS-related protein RAB 90.3 0.16 5.5E-06 44.6 3.2 24 149-172 21-44 (191)
471 3reg_A RHO-like small GTPase; 90.2 0.16 5.5E-06 44.6 3.2 25 148-172 22-46 (194)
472 3ihw_A Centg3; RAS, centaurin, 90.2 0.16 5.5E-06 44.7 3.1 24 149-172 20-43 (184)
473 1vg8_A RAS-related protein RAB 90.2 0.16 5.6E-06 44.8 3.2 25 148-172 7-31 (207)
474 1zd9_A ADP-ribosylation factor 90.1 0.15 5.2E-06 44.7 2.8 25 148-172 21-45 (188)
475 3cph_A RAS-related protein SEC 90.0 0.2 6.7E-06 44.5 3.6 25 148-172 19-43 (213)
476 1zbd_A Rabphilin-3A; G protein 90.0 0.16 5.6E-06 44.8 3.0 24 149-172 8-31 (203)
477 1zj6_A ADP-ribosylation factor 89.9 0.2 6.7E-06 43.7 3.4 25 148-172 15-39 (187)
478 2gf0_A GTP-binding protein DI- 89.9 0.21 7.2E-06 43.6 3.7 25 148-172 7-31 (199)
479 3oes_A GTPase rhebl1; small GT 89.9 0.17 5.7E-06 44.9 3.0 25 148-172 23-47 (201)
480 3qks_A DNA double-strand break 89.8 0.19 6.4E-06 45.8 3.3 27 149-175 23-49 (203)
481 2bcg_Y Protein YP2, GTP-bindin 89.7 0.17 6E-06 44.8 3.0 24 149-172 8-31 (206)
482 2fh5_B SR-beta, signal recogni 89.7 0.2 6.9E-06 44.7 3.4 24 149-172 7-30 (214)
483 3euj_A Chromosome partition pr 89.7 0.2 6.8E-06 52.2 3.8 28 146-174 27-54 (483)
484 2c61_A A-type ATP synthase non 89.6 0.36 1.2E-05 50.1 5.6 24 152-175 155-178 (469)
485 1gwn_A RHO-related GTP-binding 89.6 0.18 6.1E-06 45.4 3.0 25 148-172 27-51 (205)
486 2www_A Methylmalonic aciduria 89.6 0.23 7.8E-06 49.2 4.0 25 149-173 74-98 (349)
487 1fzq_A ADP-ribosylation factor 89.5 0.2 7E-06 43.7 3.2 25 148-172 15-39 (181)
488 3oaa_A ATP synthase subunit al 89.4 0.46 1.6E-05 49.7 6.2 28 151-178 164-192 (513)
489 2ew1_A RAS-related protein RAB 89.4 0.19 6.6E-06 45.1 3.0 24 149-172 26-49 (201)
490 1xx6_A Thymidine kinase; NESG, 89.3 0.41 1.4E-05 43.5 5.2 33 149-181 8-43 (191)
491 2fu5_C RAS-related protein RAB 89.3 0.12 4.1E-06 44.7 1.5 24 149-172 8-31 (183)
492 2atx_A Small GTP binding prote 89.3 0.2 6.8E-06 43.9 3.0 23 150-172 19-41 (194)
493 2qag_B Septin-6, protein NEDD5 89.2 0.18 6.2E-06 51.7 3.0 21 152-172 45-65 (427)
494 1fx0_A ATP synthase alpha chai 89.2 0.3 1E-05 51.2 4.6 28 151-178 165-193 (507)
495 1f6b_A SAR1; gtpases, N-termin 89.2 0.2 6.8E-06 44.6 2.9 23 149-171 25-47 (198)
496 3lxx_A GTPase IMAP family memb 89.1 0.2 6.8E-06 46.1 3.0 24 149-172 29-52 (239)
497 2rcn_A Probable GTPase ENGC; Y 89.1 0.22 7.6E-06 49.9 3.5 25 150-174 216-240 (358)
498 2hjg_A GTP-binding protein ENG 89.0 1.2 4.2E-05 45.0 9.1 22 151-172 5-26 (436)
499 2yv5_A YJEQ protein; hydrolase 89.0 0.22 7.4E-06 48.3 3.3 24 149-173 165-188 (302)
500 1qhl_A Protein (cell division 89.0 0.11 3.6E-06 48.8 1.0 23 152-174 30-52 (227)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=7.1e-55 Score=429.18 Aligned_cols=293 Identities=88% Similarity=1.400 Sum_probs=254.0
Q ss_pred ccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCCh
Q 014243 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (428)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (428)
+|++..+++|++++|+++++.+++|+|+..++.++|+|+|||||||||||++|++||++++.+++.++++++.++|+|++
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~ 80 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP 80 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEE
Q 014243 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273 (428)
Q Consensus 194 ~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~ 273 (428)
++.+++.|..|.+.++...||||||||||++++++++..+.+..++.+..+|++++|+.+.+++++.+......+|+||+
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 99999999999888888899999999999999877655666677889999999999999999988887777788999999
Q ss_pred EeCCCCCCChhhcCCCCceEEEeCCCHHHHHHHHHHhccCCCCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHH
Q 014243 274 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 353 (428)
Q Consensus 274 TTN~~~~Ld~ALlR~gRfd~~i~~P~~eeR~~Il~~~~~~~~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~ 353 (428)
|||+++.||+||+|+||||+.++.|+.++|.+|++.++...+++.+.+++++++|++++|++++++|++++++++++|++
T Consensus 161 ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~ 240 (293)
T 3t15_A 161 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240 (293)
T ss_dssp ECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccchhhhhcCcCCCCCCCCCccCHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 014243 354 GVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 406 (428)
Q Consensus 354 ~~~~e~~~~~l~~~~~~~~~f~~~~~~~~~ll~~g~~l~~eq~~v~~~~l~~~ 406 (428)
+.|.+++.+.++++....|.|.++.+++++||++||++++||++++.++|+++
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~~ 293 (293)
T 3t15_A 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293 (293)
T ss_dssp HTCSTTCHHHHTSCSSCSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999888999999999999999999999999999999999874
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-41 Score=343.84 Aligned_cols=177 Identities=19% Similarity=0.271 Sum_probs=153.9
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014243 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+|++++++|.+|..| +..+||||||||||
T Consensus 176 ~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~A----r~~aP~IIFiDEiD 251 (405)
T 4b4t_J 176 SLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEID 251 (405)
T ss_dssp HHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHH----HHTCSEEEEEESSS
T ss_pred hCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHH----HHhCCceEeeecch
Confidence 35899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CC
Q 014243 223 AGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 298 (428)
Q Consensus 223 a~~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 298 (428)
+++++|..... .....+.+.+ |++.+| |. ....+|+||+|||+|+.|||||+||||||+.|+ +|
T Consensus 252 ai~~~R~~~~~~~~~~~~~~l~~-lL~~lD--------g~---~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lP 319 (405)
T 4b4t_J 252 SIGSTRVEGSGGGDSEVQRTMLE-LLNQLD--------GF---ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319 (405)
T ss_dssp CCTTSCSCSSSGGGGHHHHHHHH-HHHHHH--------TT---TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCC
T ss_pred hhccCCCCCCCCCcHHHHHHHHH-HHHhhh--------cc---CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCc
Confidence 99998853222 2222333333 333334 55 556889999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+.++|.+|++.|++.. +++.+.||+.|+||+|+||..
T Consensus 320 d~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~ 360 (405)
T 4b4t_J 320 SVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKG 360 (405)
T ss_dssp CHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHH
Confidence 9999999999998763 567889999999999999974
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-40 Score=338.37 Aligned_cols=177 Identities=21% Similarity=0.295 Sum_probs=153.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014243 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+|++++++|.+|..| +..+||||||||+|
T Consensus 210 ~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~A----r~~aP~IIfiDEiD 285 (437)
T 4b4t_I 210 EMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVA----GENAPSIVFIDEID 285 (437)
T ss_dssp HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHH----HHTCSEEEEEEEES
T ss_pred hCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHH----HhcCCcEEEEehhh
Confidence 45899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CC
Q 014243 223 AGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 298 (428)
Q Consensus 223 a~~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 298 (428)
+++.+|..... .....+.+. .|++.+| +. ....+|+||+|||+|+.|||||+||||||+.|+ +|
T Consensus 286 ai~~~R~~~~~~~~~~~~~~l~-~LL~~lD--------g~---~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP 353 (437)
T 4b4t_I 286 AIGTKRYDSNSGGEREIQRTML-ELLNQLD--------GF---DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353 (437)
T ss_dssp SSSCCCSCSSCSSCCHHHHHHH-HHHHHHH--------HC---CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred hhcccCCCCCCCccHHHHHHHH-HHHHHhh--------Cc---CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence 99998853322 122223333 2333333 44 566789999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+.++|.+|++.|+... +++.+.||+.|+||+|+||..
T Consensus 354 d~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 354 DLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQA 394 (437)
T ss_dssp CHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence 9999999999998753 567889999999999999974
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-39 Score=337.26 Aligned_cols=209 Identities=18% Similarity=0.266 Sum_probs=164.9
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCC
Q 014243 113 YNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K-~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~G 191 (428)
.+|+.+.|-..+..++.+.+...+.. ..+...|+++|+|||||||||||||++|+|||++++++|+.++++++.++|+|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 34456555433333433333322211 22234589999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 014243 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (428)
Q Consensus 192 e~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~V 271 (428)
++++++|.+|..| +..+||||||||+|+++.+|+.... .....+..+++.+|+ ++++. ....+|+|
T Consensus 286 esek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~-----~lDg~---~~~~~ViV 351 (467)
T 4b4t_H 286 EGARMVRELFEMA----RTKKACIIFFDEIDAVGGARFDDGA--GGDNEVQRTMLELIT-----QLDGF---DPRGNIKV 351 (467)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEECCTTTSBCCSSSSC--GGGGHHHHHHHHHHH-----HHHSS---CCTTTEEE
T ss_pred HHHHHHHHHHHHH----HhcCCceEeecccccccccccCcCC--CccHHHHHHHHHHHH-----Hhhcc---CCCCcEEE
Confidence 9999999999999 9999999999999999998863322 111222223333333 22344 56688999
Q ss_pred EEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHh
Q 014243 272 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 272 I~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~ 335 (428)
|+|||+|+.||+||+||||||+.|+ +|+.++|.+|++.|++. .+++++.|++.|+||+|+||..
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS 421 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHH
Confidence 9999999999999999999999999 99999999999999875 3577889999999999999974
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-40 Score=340.06 Aligned_cols=179 Identities=23% Similarity=0.361 Sum_probs=154.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014243 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+|++++++|.+|..| +..+||||||||+|
T Consensus 209 ~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A----~~~aP~IifiDEiD 284 (434)
T 4b4t_M 209 DMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALA----KEKAPTIIFIDELD 284 (434)
T ss_dssp HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHH----HHHCSEEEEEECTH
T ss_pred hCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHH----HhcCCeEEeecchh
Confidence 35899999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014243 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
+++++|.+... ...+.+..++..+|+ +++|+ ....+|+||+|||+|+.|||||+||||||+.|+ +|+.
T Consensus 285 al~~~R~~~~~--~~~~~~~~~~~~lL~-----~ldg~---~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 285 AIGTKRFDSEK--SGDREVQRTMLELLN-----QLDGF---SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp HHHCCCSSGGG--GTTHHHHHHHHHHHH-----HHTTS---CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCH
T ss_pred hhhhccCCCCC--CCchHHHHHHHHHHH-----Hhhcc---CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCH
Confidence 99998863221 222333333333333 33355 556789999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHh
Q 014243 301 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 301 eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~ 335 (428)
++|.+|++.|++. .+++++.||+.|+||+|+||..
T Consensus 355 ~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~ 393 (434)
T 4b4t_M 355 DSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKA 393 (434)
T ss_dssp HHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence 9999999988764 4678899999999999999974
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-40 Score=339.11 Aligned_cols=178 Identities=26% Similarity=0.358 Sum_probs=154.0
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014243 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+|+++++++.+|..| +..+||||||||+|
T Consensus 209 ~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A----~~~~P~IifiDEiD 284 (437)
T 4b4t_L 209 RVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA----KEHEPCIIFMDEVD 284 (437)
T ss_dssp HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHH----HHSCSEEEEEECCC
T ss_pred hCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHH----HhcCCceeeeeccc
Confidence 45899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CC
Q 014243 223 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 298 (428)
Q Consensus 223 a~~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 298 (428)
+++++|.... ......+.+.+ |++.+| |. ....+|+||+|||+|+.|||||+||||||+.|+ +|
T Consensus 285 ai~~~R~~~~~~~~~~~~~~l~~-lL~~lD--------g~---~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lP 352 (437)
T 4b4t_L 285 AIGGRRFSEGTSADREIQRTLME-LLTQMD--------GF---DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLP 352 (437)
T ss_dssp SSSCCCSSSCCSSTTHHHHHHHH-HHHHHH--------SS---SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCC
T ss_pred ccccccccCCCCcchHHHHHHHH-HHHHhh--------cc---cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCc
Confidence 9999885322 12222333332 333334 55 556789999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHhH
Q 014243 299 TREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~~ 336 (428)
+.++|.+||+.|+.. .+++++.|++.|+||+|+||..+
T Consensus 353 d~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l 394 (437)
T 4b4t_L 353 NEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNC 394 (437)
T ss_dssp CHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHH
Confidence 999999999999865 36788899999999999999743
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-38 Score=325.50 Aligned_cols=177 Identities=20% Similarity=0.284 Sum_probs=153.8
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014243 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+|++++.++.+|..| +..+||||||||+|
T Consensus 200 ~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A----~~~aP~IifiDEiD 275 (428)
T 4b4t_K 200 QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA----RENAPSIIFIDEVD 275 (428)
T ss_dssp HHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHH----HHTCSEEEEEECTH
T ss_pred hCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHH----HHcCCCeeechhhh
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe---C
Q 014243 223 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW---A 297 (428)
Q Consensus 223 a~~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~---~ 297 (428)
++++.|.... .....++++.+ |++.+| |. ....+|+||+|||+|+.|||||+||||||+.|+ +
T Consensus 276 ~i~~~R~~~~~~~~~~~~r~l~~-lL~~ld--------g~---~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~l 343 (428)
T 4b4t_K 276 SIATKRFDAQTGSDREVQRILIE-LLTQMD--------GF---DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343 (428)
T ss_dssp HHHCSCSSSCSCCCCHHHHHHHH-HHHHHH--------HS---CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSS
T ss_pred hhhccccCCCCCCChHHHHHHHH-HHHHhh--------CC---CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCC
Confidence 9998885222 22334455554 334444 55 456789999999999999999999999999987 5
Q ss_pred CCHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 298 PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 298 P~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
|+.++|.+|++.|+... +++.+.|++.|+||+|+||..
T Consensus 344 Pd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~ 385 (428)
T 4b4t_K 344 RDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 385 (428)
T ss_dssp CCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHH
Confidence 89999999999998653 567889999999999999974
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.6e-37 Score=340.24 Aligned_cols=191 Identities=22% Similarity=0.352 Sum_probs=137.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|.++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|+++++++++|..| +..+||||||||||+
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~A----r~~~P~IifiDEiDs 581 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDS 581 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHH----HTTCSEEEECSCGGG
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHH----HHcCCceeechhhhH
Confidence 4889999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCCCC--cccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014243 224 GAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 224 ~~~~r~~~--~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
+++.|+.. .......++++++| ..+| |. ....+|+||+|||+|+.||+||+||||||+.++ +|+
T Consensus 582 l~~~R~~~~~~~~~~~~rv~~~lL-~~md--------g~---~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd 649 (806)
T 3cf2_A 582 IAKARGGNIGDGGGAADRVINQIL-TEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp CC--------------CHHHHHHH-HHHH--------SS---CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC----
T ss_pred HhhccCCCCCCCchHHHHHHHHHH-HHHh--------CC---CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcC
Confidence 99988632 22334556666555 3444 55 556789999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHH
Q 014243 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 353 (428)
Q Consensus 300 ~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~ 353 (428)
.++|.+|++.++++. +++.+.|++.|+||+|+||.. ++..+...++|+.+.
T Consensus 650 ~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~---l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE---ICQRACKLAIRESIE 704 (806)
T ss_dssp -CHHHHTTTTTSSCC--CCC----------------CHHH---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHH---HHHHHHHHHHHHHHH
Confidence 999999999999764 566788999999999999984 344444455666554
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.5e-34 Score=313.23 Aligned_cols=221 Identities=20% Similarity=0.281 Sum_probs=175.4
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCC
Q 014243 113 YNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K-~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~G 191 (428)
.+|+.+.|-......+.+.+...+.. ......|+++|+|||||||||||||+||++||+++|.+|+.++++++.++|.|
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 44566555444444544433333322 12245689999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 014243 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (428)
Q Consensus 192 e~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~V 271 (428)
++++.++.+|..| +..+||||||||||+++++|++. ......+++++ |+.++| +. ....+|+|
T Consensus 281 ese~~lr~lF~~A----~~~~PsIIfIDEiDal~~~r~~~-~~~~~~riv~~-LL~~md--------g~---~~~~~V~V 343 (806)
T 3cf2_A 281 ESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQ-LLTLMD--------GL---KQRAHVIV 343 (806)
T ss_dssp HHHHHHHHHHHHH----TTSCSEEEEEESGGGTCCTTTTC-CCTTHHHHHHH-HHTHHH--------HC---CGGGCEEE
T ss_pred HHHHHHHHHHHHH----HHcCCeEEEEehhcccccccCCC-CChHHHHHHHH-HHHHHh--------cc---cccCCEEE
Confidence 9999999999999 99999999999999999988632 33344455554 445555 44 44578999
Q ss_pred EEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHhHHHHHhhhhH
Q 014243 272 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFFGALRARVYD 345 (428)
Q Consensus 272 I~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~~~alra~~~~ 345 (428)
|+|||+++.||++|+|+||||+.++ +|+.++|.+|++.+++. .+++.+.|++.|+||+|+||.. |+..+..
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~---Lv~eA~~ 420 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA---LCSEAAL 420 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHH---HHHHHHH
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHH---HHHHHHH
Confidence 9999999999999999999999999 99999999999999875 4678889999999999999974 3333334
Q ss_pred HHHHHHHH
Q 014243 346 DEVRKWIS 353 (428)
Q Consensus 346 ~~v~~~i~ 353 (428)
.++++...
T Consensus 421 ~A~~r~~~ 428 (806)
T 3cf2_A 421 QAIRKKMD 428 (806)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 44555443
No 10
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=4.1e-31 Score=276.77 Aligned_cols=178 Identities=21% Similarity=0.274 Sum_probs=146.8
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014243 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|.++|+|+||+||||||||++|++||++++.+|+.++++++.+.+.|..+..++.+|..| ....||||||||+|
T Consensus 43 ~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A----~~~~p~ILfIDEid 118 (476)
T 2ce7_A 43 RIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQA----KAHAPCIVFIDEID 118 (476)
T ss_dssp TTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHH----HHTCSEEEEEETGG
T ss_pred hcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHH----HhcCCCEEEEechh
Confidence 45788999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CC
Q 014243 223 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 298 (428)
Q Consensus 223 a~~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 298 (428)
++..+++... ......+.++++| ..+| ++ ....+++||+|||+++.||++++|+||||+.+. .|
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL-~~ld--------~~---~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~P 186 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLL-VEMD--------GF---DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186 (476)
T ss_dssp GTCCC---------CHHHHHHHHHH-HHHH--------HS---CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred hhhhhcccccCcCcHHHHHHHHHHH-HHHh--------cc---CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCC
Confidence 9988775211 1122223444333 3333 33 234678999999999999999999999999888 99
Q ss_pred CHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhH
Q 014243 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~ 336 (428)
+.++|.+|++.+++.. +++.+.++..+.||+|+||..+
T Consensus 187 d~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~l 228 (476)
T 2ce7_A 187 DMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENL 228 (476)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHH
Confidence 9999999999888753 4567789999999999999753
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=252.10 Aligned_cols=221 Identities=18% Similarity=0.204 Sum_probs=165.0
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCeEEecccccccCCCC
Q 014243 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAG 191 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el-g~~~i~vs~s~L~s~~~G 191 (428)
.+|+.+.|-..+...+.+.+...+....+...+..+|+++|||||||||||++|+++|+++ +.+|+.++++++.++|.|
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g 88 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 88 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhh
Confidence 3456666653333333333222222222222345678999999999999999999999999 899999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 014243 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (428)
Q Consensus 192 e~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~V 271 (428)
+.++.++.+|..+ +..+|+||||||+|++.+.+... ......++++++| ..++ +. .....+++|
T Consensus 89 ~~~~~~~~lf~~a----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll-~~ld--------~~--~~~~~~v~v 152 (322)
T 1xwi_A 89 ESEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFL-VQMQ--------GV--GVDNDGILV 152 (322)
T ss_dssp SCHHHHHHHHHHH----HHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHH-HHHH--------CS--SSCCTTEEE
T ss_pred HHHHHHHHHHHHH----HhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHH-HHHh--------cc--cccCCCEEE
Confidence 9999999999998 88899999999999998887532 3334445555444 4444 22 123478999
Q ss_pred EEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccCCCC--C---HhHHHHHhcCCChhhHHhHHHHHhhhh
Q 014243 272 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIDFFGALRARVY 344 (428)
Q Consensus 272 I~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~~l--~---~~~la~lt~gfsgadL~~~~alra~~~ 344 (428)
|+|||+++.||++++| ||++.++ +|+.++|.+|++.++...+. + .+.|++.++||+|+||.. ++..+.
T Consensus 153 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~A~ 227 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISI---IVRDAL 227 (322)
T ss_dssp EEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHH---HHHHHH
T ss_pred EEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHH
Confidence 9999999999999999 9998888 99999999999999876543 3 445899999999999984 444444
Q ss_pred HHHHHHHHHh
Q 014243 345 DDEVRKWISG 354 (428)
Q Consensus 345 ~~~v~~~i~~ 354 (428)
..++++.+..
T Consensus 228 ~~a~r~~~~~ 237 (322)
T 1xwi_A 228 MQPVRKVQSA 237 (322)
T ss_dssp THHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 4556665543
No 12
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=1.8e-29 Score=250.50 Aligned_cols=222 Identities=18% Similarity=0.226 Sum_probs=164.1
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCC
Q 014243 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge 192 (428)
.+|+++.|...+...+.+.+........+...+..+++++|||||||||||++|+++|++++.+|+.++++++.++|.|+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~ 94 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 94 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGG
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccch
Confidence 45577777533333333322222211112223567789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 014243 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (428)
Q Consensus 193 ~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 272 (428)
.++.++.+|..+ +...|+||||||+|.+...++.. +.....+... .|+..++ +. .....+++||
T Consensus 95 ~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~-~ll~~l~--------~~--~~~~~~v~vi 158 (322)
T 3eie_A 95 SEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG-ESEASRRIKT-ELLVQMN--------GV--GNDSQGVLVL 158 (322)
T ss_dssp HHHHHHHHHHHH----HHTSSEEEEEECGGGGSCC-------CCTHHHHH-HHHHHHG--------GG--GTSCCCEEEE
T ss_pred HHHHHHHHHHHH----HhcCCeEEEechhhhhhccCCCC-cchHHHHHHH-HHHHHhc--------cc--cccCCceEEE
Confidence 999999999999 88899999999999998877522 2233334444 3444444 22 1234679999
Q ss_pred EEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccCCCC--C---HhHHHHHhcCCChhhHHhHHHHHhhhhH
Q 014243 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIDFFGALRARVYD 345 (428)
Q Consensus 273 ~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~~l--~---~~~la~lt~gfsgadL~~~~alra~~~~ 345 (428)
+|||+++.||++++| ||++.++ +|+.++|.+|++.++..... + .+.|++.++||+|+||.. ++..+..
T Consensus 159 ~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~---l~~~a~~ 233 (322)
T 3eie_A 159 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV---VVKDALM 233 (322)
T ss_dssp EEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHH---HHHHHTT
T ss_pred EecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHH
Confidence 999999999999999 9998888 99999999999999876543 3 345889999999999973 4444455
Q ss_pred HHHHHHHHhh
Q 014243 346 DEVRKWISGV 355 (428)
Q Consensus 346 ~~v~~~i~~~ 355 (428)
.++++.....
T Consensus 234 ~a~r~~~~~~ 243 (322)
T 3eie_A 234 QPIRKIQSAT 243 (322)
T ss_dssp HHHHHHHHCE
T ss_pred HHHHHHhhhh
Confidence 5677766553
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=247.56 Aligned_cols=177 Identities=25% Similarity=0.388 Sum_probs=143.4
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014243 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 142 ~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
...++.+|+|+||+||||||||+|+++||.+++.+++.+++.++.+.+.|+.++.++.+|..+ +...||++|+||+
T Consensus 37 ~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a----~~~~p~i~~~Dei 112 (274)
T 2x8a_A 37 KALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRA----KNSAPCVIFFDEV 112 (274)
T ss_dssp HHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHH----HHTCSEEEEEETC
T ss_pred HHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHH----HhcCCCeEeeehh
Confidence 345888999999999999999999999999999999999999999999999999999999998 7889999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014243 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
|.++..++.. ......+.+++.+ ..++ |. .....++++++||+|+.||+|++||||||+.++ +|+
T Consensus 113 d~~~~~r~~~-~~~~~~~~~~~~l-~~Ls--------gg---~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~ 179 (274)
T 2x8a_A 113 DALCPRRSDR-ETGASVRVVNQLL-TEMD--------GL---EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPP 179 (274)
T ss_dssp TTTCC----------CTTHHHHHH-HHHH--------TC---CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCC
T ss_pred hhhhcccCCC-cchHHHHHHHHHH-Hhhh--------cc---cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcC
Confidence 9987765421 1111223333333 2233 33 445678999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhccC-------CCCCHhHHHHH--hcCCChhhHHh
Q 014243 300 REDRIGVCKGIFRN-------DNVADDDIVKL--VDTFPGQSIDF 335 (428)
Q Consensus 300 ~eeR~~Il~~~~~~-------~~l~~~~la~l--t~gfsgadL~~ 335 (428)
.++|.+|++.+++. .+++.+.++.. ++||+|+||..
T Consensus 180 ~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~ 224 (274)
T 2x8a_A 180 PADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSA 224 (274)
T ss_dssp HHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHH
Confidence 99999999998843 35678888886 45999999974
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.9e-29 Score=248.19 Aligned_cols=176 Identities=22% Similarity=0.364 Sum_probs=147.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.++++++++|||||||||||++|+++|++++.+++.++++++.++|.|+.++.++.+|..| ....||||||||+|.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDS 119 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHH----HHTCSEEEEECSTTH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHH----HhcCCeEEEEEChHH
Confidence 3778899999999999999999999999999999999999999999999999999999999 888999999999999
Q ss_pred ccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014243 224 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 224 ~~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
+...+++.. ......+.+.+ |+..++ +. ....+|+||+|||+++.||++++|+|||++.++ .|+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~-lL~~l~--------~~---~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~ 187 (301)
T 3cf0_A 120 IAKARGGNIGDGGGAADRVINQ-ILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 187 (301)
T ss_dssp HHHHHTTTTCCSSCSCCHHHHH-HHHHHH--------SS---CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred HhhccCCCcCCcchHHHHHHHH-HHHHhh--------cc---cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcC
Confidence 876653211 11122334443 445555 33 334679999999999999999999999999888 999
Q ss_pred HHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 300 ~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
.++|.+|++.++... +++.+.++..+.||+|+||..
T Consensus 188 ~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 188 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp HHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHH
Confidence 999999999988653 567888999999999999874
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=2.5e-28 Score=246.26 Aligned_cols=274 Identities=18% Similarity=0.253 Sum_probs=179.3
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCC
Q 014243 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge 192 (428)
.+|+++.|...+...+.+.+...+....+...+.++++++|||||||||||++|+++|++++.+|+.++++++.++|.|+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~ 127 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 127 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcch
Confidence 34566666433333333222222222222223567889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 014243 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (428)
Q Consensus 193 ~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 272 (428)
.++.++.+|..+ +...|+||||||+|.+...++.. +.....+++.+ |+..++ +. .....+++||
T Consensus 128 ~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~-~~~~~~~~~~~-ll~~l~--------~~--~~~~~~v~vI 191 (355)
T 2qp9_X 128 SEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG-ESEASRRIKTE-LLVQMN--------GV--GNDSQGVLVL 191 (355)
T ss_dssp CHHHHHHHHHHH----HHTSSEEEEEECGGGGTC-------CTHHHHHHHH-HHHHHH--------HC--C---CCEEEE
T ss_pred HHHHHHHHHHHH----HHcCCeEEEEechHhhcccCCCC-cchHHHHHHHH-HHHHhh--------cc--cccCCCeEEE
Confidence 999999999998 88899999999999998877522 22333444443 444444 22 1234679999
Q ss_pred EEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccCCCC--C---HhHHHHHhcCCChhhHHhHHHHHhhhhH
Q 014243 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIDFFGALRARVYD 345 (428)
Q Consensus 273 ~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~~l--~---~~~la~lt~gfsgadL~~~~alra~~~~ 345 (428)
+|||+++.||++++| ||++.++ +|+.++|.+|++.++...+. + .+.|++.++||+|+||.. ++..+..
T Consensus 192 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~---l~~~A~~ 266 (355)
T 2qp9_X 192 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV---VVKDALM 266 (355)
T ss_dssp EEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH---HHHHHHH
T ss_pred eecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHH
Confidence 999999999999999 9998888 99999999999999876542 3 445899999999999974 3334444
Q ss_pred HHHHHHHHhhcCccchhh------hh----------c-C-cC-CCCCCCCCccCHHHHHHHHHHH---HHHHhhhhhhhH
Q 014243 346 DEVRKWISGVGVGSIGKS------LV----------N-S-KE-AAPTFEQPRMTMEKLLEYGNMI---VQEQENVKRVQL 403 (428)
Q Consensus 346 ~~v~~~i~~~~~e~~~~~------l~----------~-~-~~-~~~~f~~~~~~~~~ll~~g~~l---~~eq~~v~~~~l 403 (428)
.++++.........+... .. . . .. .......+.++.+++.++...+ +.+.+...+.+.
T Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~ 346 (355)
T 2qp9_X 267 QPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 346 (355)
T ss_dssp HHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 455554433211111000 00 0 0 00 0011234568899998888765 334444455555
Q ss_pred HHHh
Q 014243 404 ADKY 407 (428)
Q Consensus 404 ~~~~ 407 (428)
.++|
T Consensus 347 ~~~~ 350 (355)
T 2qp9_X 347 TRDF 350 (355)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5554
No 16
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=2.7e-29 Score=264.30 Aligned_cols=286 Identities=17% Similarity=0.182 Sum_probs=190.0
Q ss_pred cccccccCcCCCCCchhhHHHHHHHHHHH--hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccC
Q 014243 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188 (428)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~K~--~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~ 188 (428)
..++|+++.|.......+.+ ++.. .++ .+...+.+.|+|+||+||||||||+||++||.+++.+++.++++++.+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~-lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKE-IVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHH-HHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHH-HHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 45667887765322222221 1111 111 1223577889999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 014243 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266 (428)
Q Consensus 189 ~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~ 266 (428)
+.|...+.++.+|+.+ ....|||+||||||.+...++... ......+.++++| ..++ +. ...
T Consensus 104 ~~g~~~~~v~~lfq~a----~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL-~~Ld--------g~---~~~ 167 (499)
T 2dhr_A 104 FVGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKD 167 (499)
T ss_dssp CTTHHHHHHHHHTTTS----SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH-HHGG--------GC---CSS
T ss_pred hhhhHHHHHHHHHHHH----HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHH-HHhc--------cc---ccC
Confidence 9999989999999988 667899999999999987764211 1111223333333 2223 44 445
Q ss_pred CCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhHHHHH
Q 014243 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALR 340 (428)
Q Consensus 267 ~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~~alr 340 (428)
..+++|++||+|+.||++++||||||+.+. .|+.++|.+|++.+++.. +++...++..+.||+|+||..+..
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~-- 245 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN-- 245 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH--
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH--
Confidence 678999999999999999999999999988 999999999999988653 445677999999999999985421
Q ss_pred hhhhHHHHHHHHHhhcCccchhh---hhcCcC-CCCCCCCCccCHHHHHHHHHHHHHHHh-hhhhhhHHHHhcCccccCc
Q 014243 341 ARVYDDEVRKWISGVGVGSIGKS---LVNSKE-AAPTFEQPRMTMEKLLEYGNMIVQEQE-NVKRVQLADKYLSEAALGE 415 (428)
Q Consensus 341 a~~~~~~v~~~i~~~~~e~~~~~---l~~~~~-~~~~f~~~~~~~~~ll~~g~~l~~eq~-~v~~~~l~~~~l~~~~l~~ 415 (428)
. +...+.++--..+..+.+... ++...+ ....+.+.+....++|++||.++..-. ....+..++...++.+||-
T Consensus 246 ~-Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~ 324 (499)
T 2dhr_A 246 E-AALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGF 324 (499)
T ss_dssp H-HHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCS
T ss_pred H-HHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcc
Confidence 0 000000000001112222211 111111 112333444567899999999987642 1123333444556777776
Q ss_pred ch
Q 014243 416 AN 417 (428)
Q Consensus 416 ~~ 417 (428)
+-
T Consensus 325 ~~ 326 (499)
T 2dhr_A 325 MM 326 (499)
T ss_dssp SH
T ss_pred cc
Confidence 54
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=3.3e-27 Score=225.69 Aligned_cols=176 Identities=22% Similarity=0.298 Sum_probs=143.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.+.+.|+++||+||||||||++|+++|++++.+++.++++++.+.+.|+..+.++.+|..+ ....|++|||||+|.
T Consensus 40 ~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~il~iDeid~ 115 (257)
T 1lv7_A 40 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEIDA 115 (257)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHH----HTTCSEEEEETTHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHH----HHcCCeeehhhhhhh
Confidence 4677899999999999999999999999999999999999999999999999999999998 778899999999999
Q ss_pred ccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014243 224 GAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 224 ~~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
+...+..... .....+.+..+| ..++ +. ....+++||+|||+++.+|++++|+|||++.+. .|+
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~~ll-~~l~--------~~---~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~ 183 (257)
T 1lv7_A 116 VGRQRGAGLGGGHDEREQTLNQML-VEMD--------GF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 183 (257)
T ss_dssp HTCCCSTTSCCTTCHHHHHHHHHH-HHHH--------TC---CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCC
T ss_pred hccCCCCCcCCCchHHHHHHHHHH-HHhh--------Cc---ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCC
Confidence 9877642111 111223344333 3333 33 335678999999999999999999999999888 999
Q ss_pred HHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 300 ~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
.++|.+|++.++... +++...++..+.||++++|..
T Consensus 184 ~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 184 VRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHH
Confidence 999999999887654 344666899999999999974
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=7.4e-28 Score=228.98 Aligned_cols=176 Identities=23% Similarity=0.345 Sum_probs=134.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|.+.|+++|||||||||||++|+++|++++.+++.++++++.+.+.|.....++.+|..+ ....|+||||||+|.
T Consensus 34 ~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 34 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEA----RARAPCIVYIDEIDA 109 (262)
T ss_dssp --CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHH----HHTCSEEEEEECC--
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHH----HhcCCeEEEEeCcch
Confidence 4678899999999999999999999999999999999999999999999999999999998 777899999999999
Q ss_pred ccCCCCCCcc---cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CC
Q 014243 224 GAGRMGGTTQ---YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 298 (428)
Q Consensus 224 ~~~~r~~~~~---~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 298 (428)
+...+..... .......+..+| +.++ +. ....+++||+|||.++.||++++|+|||+..++ .|
T Consensus 110 l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~--------~~---~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 110 VGKKRSTTMSGFSNTEEEQTLNQLL-VEMD--------GM---GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177 (262)
T ss_dssp -----------------CHHHHHHH-HHHH--------TC---CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSC
T ss_pred hhccccccccCccchhHHHHHHHHH-HHhh--------Cc---CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCc
Confidence 9877642110 111122333333 2233 22 234678999999999999999999999999888 99
Q ss_pred CHHHHHHHHHHhccCCCCC------HhHHHHHhcCCChhhHHh
Q 014243 299 TREDRIGVCKGIFRNDNVA------DDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~~l~------~~~la~lt~gfsgadL~~ 335 (428)
+.++|.+|++.++...++. ...+++.+.||++++|..
T Consensus 178 ~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 178 TLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHH
Confidence 9999999999988765443 245888899999998864
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.4e-27 Score=230.78 Aligned_cols=178 Identities=24% Similarity=0.348 Sum_probs=146.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|+.++.++|||||||||||++|+++|++++.+++.++++++.+.+.|+....++.+|..+ ....|+||||||+|.
T Consensus 46 ~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 46 VGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLA----KEKAPSIIFIDEIDA 121 (285)
T ss_dssp HCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHH----HHTCSEEEEEETTHH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHH----HHcCCeEEEEECHHH
Confidence 4678899999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHH
Q 014243 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~e 301 (428)
+..++.+.. ..........+..+++ .+++. ....++.||+|||+++.+|++++|++||+..+. .|+.+
T Consensus 122 l~~~~~~~~--~~~~~~~~~~l~~ll~-----~~~~~---~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~ 191 (285)
T 3h4m_A 122 IAAKRTDAL--TGGDREVQRTLMQLLA-----EMDGF---DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEK 191 (285)
T ss_dssp HHBCCSSSC--CGGGGHHHHHHHHHHH-----HHHTT---CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHH
T ss_pred hcccCcccc--CCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHH
Confidence 987765221 1112222333334433 11122 334678999999999999999999999998888 99999
Q ss_pred HHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 302 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 302 eR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+|.+|++.++... +.+.+.++..+.||++++|..
T Consensus 192 ~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 192 GRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp HHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 9999999888653 456788999999999999874
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=2e-27 Score=246.63 Aligned_cols=188 Identities=19% Similarity=0.241 Sum_probs=143.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el-g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
..+|+++|||||||||||++|+++|+++ +.+|+.++++++.++|.|+.++.++.+|..+ +...|+||||||||.+
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l 239 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA----RENKPSIIFIDEIDSL 239 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHH----HHSCSEEEEESCTTTT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHH----HHcCCeEEEEechHhh
Confidence 4678999999999999999999999999 8999999999999999999999999999998 8889999999999999
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHH
Q 014243 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 302 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ee 302 (428)
.+.+... ......++++++| ..++ +.. ....+|+||+|||+++.||++|+| ||++.++ +|+.++
T Consensus 240 ~~~~~~~-~~~~~~~~~~~lL-~~l~--------~~~--~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 240 CGSRSEN-ESEAARRIKTEFL-VQMQ--------GVG--VDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 305 (444)
T ss_dssp CCCSSCC-CCGGGHHHHHHHH-TTTT--------CSS--CCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHH
T ss_pred ccCCCCc-cccHHHHHHHHHH-HHHh--------Ccc--cCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHH
Confidence 8877533 3334445555444 3333 331 134689999999999999999999 9998887 999999
Q ss_pred HHHHHHHhccCCCC-----CHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHh
Q 014243 303 RIGVCKGIFRNDNV-----ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISG 354 (428)
Q Consensus 303 R~~Il~~~~~~~~l-----~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~ 354 (428)
|.+|++.++...+. +.+.|++.++||+|+||.. ++..+...++++.+..
T Consensus 306 r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 306 RAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI---IVRDALMQPVRKVQSA 359 (444)
T ss_dssp HHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH---HHHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHhh
Confidence 99999999876532 3456999999999999984 3444445556666543
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=1.6e-26 Score=242.83 Aligned_cols=175 Identities=21% Similarity=0.303 Sum_probs=150.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|.++|.++|||||||||||++|++||++++.+|+.++++++.+++.|+....++..|..| ....|++|||||||.
T Consensus 233 ~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A----~~~~p~iLfLDEId~ 308 (489)
T 3hu3_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELDA 308 (489)
T ss_dssp HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHH----HHTCSEEEEEESHHH
T ss_pred cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHH----HhcCCcEEEecchhh
Confidence 3678899999999999999999999999999999999999999999999999999999999 888999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHH
Q 014243 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~e 301 (428)
+..++... ... ....+...|+.+++ +. ....++.||+|||+++.||++++|+|||++.++ .|+.+
T Consensus 309 l~~~~~~~-~~~-~~~~~~~~LL~~ld--------~~---~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~ 375 (489)
T 3hu3_A 309 IAPKREKT-HGE-VERRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (489)
T ss_dssp HCBCTTSC-CCH-HHHHHHHHHHHHHH--------HS---CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHH
T ss_pred hccccccc-cch-HHHHHHHHHHHHhh--------cc---ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHH
Confidence 99887522 222 23344445666666 22 345678999999999999999999999999888 99999
Q ss_pred HHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 302 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 302 eR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+|.+|++.++... +++.+.+++.+.||+++||..
T Consensus 376 eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp HHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHH
Confidence 9999999998754 455678999999999999874
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=1.3e-25 Score=214.27 Aligned_cols=177 Identities=21% Similarity=0.282 Sum_probs=140.5
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014243 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..+...|+|++|+||||||||+|++++|++++.+++.+++.++.+.+.|...+.++.+|+.+ ....|+++||||+|
T Consensus 43 ~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~i~~~Deid 118 (254)
T 1ixz_A 43 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----KRHAPCIVFIDEID 118 (254)
T ss_dssp HTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHH----TTSSSEEEEEETHH
T ss_pred HcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHH----HhcCCeEEEehhhh
Confidence 35778899999999999999999999999999999999999998888888888888999988 66789999999999
Q ss_pred cccCCCCCC--cccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CC
Q 014243 223 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 298 (428)
Q Consensus 223 a~~~~r~~~--~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 298 (428)
.+...+... .......+.+.+++ +.++ +. .....++++++||+|+.||++++|++||++.++ .|
T Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~ll-~~l~--------g~---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p 186 (254)
T 1ixz_A 119 AVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186 (254)
T ss_dssp HHHC---------CHHHHHHHHHHH-HHHH--------TC---CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSC
T ss_pred hhhcccCccccccchHHHHHHHHHH-HHHh--------CC---CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCc
Confidence 987765421 01112223333333 3333 33 334567899999999999999999999999988 99
Q ss_pred CHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+.++|.+|++.+.... +++...++..++||+|+||..
T Consensus 187 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~ 227 (254)
T 1ixz_A 187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 227 (254)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 9999999999887543 455777999999999999974
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=225.75 Aligned_cols=173 Identities=20% Similarity=0.292 Sum_probs=128.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
.+++++|||||||||||++|++||++++.+|+.++++++.+.|.|+.+..++.+|..+ ....|+||||||||.+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVA----RELQPSIIFIDQVDSLLC 221 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHH----HHSSSEEEEEETGGGGC-
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHH----HhcCCeEEEEECchhhcc
Confidence 4578999999999999999999999999999999999999999999999999999999 888999999999999987
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHH
Q 014243 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 304 (428)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~ 304 (428)
.+... ......++.. .|+..++ +. ......+|+||+|||+++.|+++++| ||+..++ .|+.++|.
T Consensus 222 ~~~~~-~~~~~~~~~~-~ll~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~ 288 (389)
T 3vfd_A 222 ERREG-EHDASRRLKT-EFLIEFD--------GV-QSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288 (389)
T ss_dssp --------CTHHHHHH-HHHHHHH--------HH-C-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred cCCCc-cchHHHHHHH-HHHHHhh--------cc-cccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHH
Confidence 76422 2222334444 3434444 22 11234678999999999999999999 8987666 99999999
Q ss_pred HHHHHhccCCC--CC---HhHHHHHhcCCChhhHHhH
Q 014243 305 GVCKGIFRNDN--VA---DDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 305 ~Il~~~~~~~~--l~---~~~la~lt~gfsgadL~~~ 336 (428)
+|++.++...+ ++ .+.|++.++||++++|..+
T Consensus 289 ~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp HHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999887644 33 3348888999999998743
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.93 E-value=2.3e-25 Score=216.75 Aligned_cols=173 Identities=17% Similarity=0.294 Sum_probs=135.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
.++.++||+||||||||++|+++|++++.+++.++++++.+.+.|+.+..++.+|..+ ....|+||||||+|.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVA----RHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHH----HHTCSEEEEEETGGGTSB
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHH----HHcCCcEEEeccHHHhcc
Confidence 4578999999999999999999999999999999999999999999999999999988 788999999999999988
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHH
Q 014243 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 304 (428)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~ 304 (428)
.+... ......+... .|+..++ +........++.||+|||+++.|+++++| ||+..++ +|+.++|.
T Consensus 128 ~~~~~-~~~~~~~~~~-~ll~~l~--------~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~ 195 (297)
T 3b9p_A 128 ERSSS-EHEASRRLKT-EFLVEFD--------GLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE 195 (297)
T ss_dssp CC------CCSHHHHH-HHHHHHH--------HCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHH
T ss_pred ccccC-cchHHHHHHH-HHHHHHh--------cccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHH
Confidence 76422 1222233333 3334444 22111223578999999999999999998 8887777 99999999
Q ss_pred HHHHHhccCCC--CC---HhHHHHHhcCCChhhHHh
Q 014243 305 GVCKGIFRNDN--VA---DDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 305 ~Il~~~~~~~~--l~---~~~la~lt~gfsgadL~~ 335 (428)
.|++.++...+ ++ .+.+++.+.||+|++|..
T Consensus 196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 99998876543 34 334888899999999974
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=5.3e-27 Score=225.03 Aligned_cols=208 Identities=17% Similarity=0.230 Sum_probs=150.6
Q ss_pred ccccccCcCCCCCchhhHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCC
Q 014243 112 TYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (428)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~-K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~ 190 (428)
.++|++++|...+...+.+.+. .+. ...+...+.+.|+++|||||||||||++|+++|++++.+++.++++.+.+.+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~ 85 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFV 85 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCS
T ss_pred CCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhc
Confidence 3556777776555555443221 111 11122346778999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcc---cchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 014243 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ---YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (428)
Q Consensus 191 Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~---~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~ 267 (428)
|..+..++.+|..+ ....|+||||||+|.+...+..... .....+.+. .++. .+++. .....
T Consensus 86 ~~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~----~ll~-----~l~~~--~~~~~ 150 (268)
T 2r62_A 86 GLGASRVRDLFETA----KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLN----QLLA-----EMDGF--GSENA 150 (268)
T ss_dssp SSCSSSSSTTHHHH----HHSCSCEEEESCGGGTTC----------CCCSCSSTT----TTTT-----TTTCS--SCSCS
T ss_pred chHHHHHHHHHHHH----HhcCCeEEEEeChhhhcccccccccCCCchhHHHHHH----HHHH-----HhhCc--ccCCC
Confidence 98887788899988 7778999999999999876531110 000001111 1111 12222 11235
Q ss_pred CceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 268 ~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+++||+|||+++.||++++|+|||+..++ .|+.++|.+|++.++... +++.+.+++.+.||+|++|..
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~ 224 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLAN 224 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHH
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHH
Confidence 68999999999999999999999998877 999999999999988653 445677899999999988864
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=224.05 Aligned_cols=173 Identities=18% Similarity=0.313 Sum_probs=137.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
.+++++|||||||||||++|+++|++++.+|+.++++++.+.|.|+.++.++.+|..+ ....|+||||||+|.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA----RCQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHH----HHTCSEEEEEETHHHHTB
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHH----HhcCCeEEEEeCchhhhc
Confidence 5789999999999999999999999999999999999999999999999999999988 788899999999999988
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHH
Q 014243 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 304 (428)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~ 304 (428)
.+... ......+.+. .|+..++ +. ......++.||+|||+++.|+++++| ||+..++ .|+.++|.
T Consensus 191 ~~~~~-~~~~~~~~~~-~lL~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~ 257 (357)
T 3d8b_A 191 QRGDG-EHESSRRIKT-EFLVQLD--------GA-TTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARK 257 (357)
T ss_dssp C-------CHHHHHHH-HHHHHHH--------C-----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred cCCCC-cchHHHHHHH-HHHHHHh--------cc-cccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHH
Confidence 76422 1222333444 3444444 22 11234678999999999999999999 8987777 99999999
Q ss_pred HHHHHhccCCC--CC---HhHHHHHhcCCChhhHHhH
Q 014243 305 GVCKGIFRNDN--VA---DDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 305 ~Il~~~~~~~~--l~---~~~la~lt~gfsgadL~~~ 336 (428)
+|++.++...+ ++ .+.|++.++||+|++|..+
T Consensus 258 ~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp HHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence 99998886643 33 3348889999999999743
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=3.3e-27 Score=261.45 Aligned_cols=176 Identities=22% Similarity=0.364 Sum_probs=145.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.++.++.++|||||||||||+||++||++++.+++.++++++.++|+|+.++.++.+|+.| +...||||||||||+
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~ 581 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDS 581 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHH----HHHCSBCCCCSSHHH
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHH----HhcCCeEEEEEChhh
Confidence 3667889999999999999999999999999999999999999999999999999999999 888899999999999
Q ss_pred ccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014243 224 GAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 224 ~~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
+...+++... .....++++ .|++.+| +. ....+|+||+|||+++.||+|++|||||++.++ .|+
T Consensus 582 l~~~r~~~~~~~~~~~~~v~~-~LL~~ld--------~~---~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~ 649 (806)
T 1ypw_A 582 IAKARGGNIGDGGGAADRVIN-QILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp HCCTTTTCCSHHHHHHHHHHH-HHHTTCC-----------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCC
T ss_pred hhhhccCCCCCcchhHHHHHH-HHHHHHh--------cc---cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCC
Confidence 9988763321 122233334 3333333 44 445789999999999999999999999998888 999
Q ss_pred HHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 300 ~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
.++|.+|++.++... +++.+.+++.++||+|++|..
T Consensus 650 ~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~ 689 (806)
T 1ypw_A 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 689 (806)
T ss_dssp CSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHH
Confidence 999999999998654 456677999999999999974
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=2e-24 Score=209.39 Aligned_cols=177 Identities=21% Similarity=0.284 Sum_probs=140.2
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014243 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..+...|+|++|+||||||||+|+++||..++..++.+++.++.+.+.+...+.++.+|+.+ ....|+++||||+|
T Consensus 67 ~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~i~~iDeid 142 (278)
T 1iy2_A 67 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----KRHAPCIVFIDEID 142 (278)
T ss_dssp HTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHH----HTSCSEEEEEETHH
T ss_pred HcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHH----HhcCCcEEehhhhH
Confidence 35778899999999999999999999999999999999999988888888888888999988 66789999999999
Q ss_pred cccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CC
Q 014243 223 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 298 (428)
Q Consensus 223 a~~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 298 (428)
.+...+.... ......+.+.+++ +.++ +. .....++++++||+|+.||++++|++||++.++ .|
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~~ll-~~ls--------gg---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p 210 (278)
T 1iy2_A 143 AVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210 (278)
T ss_dssp HHHCC--------CHHHHHHHHHHH-HHHT--------TC---CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCC
T ss_pred hhhcccccccCCcchHHHHHHHHHH-HHHh--------CC---CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCc
Confidence 9876653110 1111223333332 2222 33 334567899999999999999999999999888 99
Q ss_pred CHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+.++|.+|++.++... +++...++..++||+|+||..
T Consensus 211 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~ 251 (278)
T 1iy2_A 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 251 (278)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 9999999999887643 455777999999999999974
No 29
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=99.91 E-value=4.2e-25 Score=183.03 Aligned_cols=104 Identities=84% Similarity=1.305 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHhccCCCCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCCCC
Q 014243 297 APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQ 376 (428)
Q Consensus 297 ~P~~eeR~~Il~~~~~~~~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~~l~~~~~~~~~f~~ 376 (428)
+-++++|..|++.+++.++++.+++.++++.|++|.||||||||+++|+++||+||..+|.|+++++++++++++|.|++
T Consensus 4 ~~treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~vG~e~ig~~Lvns~e~~P~F~~ 83 (107)
T 3thg_A 4 PFTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQ 83 (107)
T ss_dssp CCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred CccHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHhCHHHHhHHHHcCCCCCCCCCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHhhhhh
Q 014243 377 PRMTMEKLLEYGNMIVQEQENVKR 400 (428)
Q Consensus 377 ~~~~~~~ll~~g~~l~~eq~~v~~ 400 (428)
|++|+++|+++|++|++||++|++
T Consensus 84 P~~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 84 PKMTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----
T ss_pred CcCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999975
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=3.1e-22 Score=221.64 Aligned_cols=208 Identities=19% Similarity=0.264 Sum_probs=165.4
Q ss_pred cccccccCcCCCCCchhhHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCC
Q 014243 111 RTYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (428)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~K-~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~ 189 (428)
..++|+.+.|.......+.+.+...+.. ..+...+++++.++||+||||||||++|++||++++.+++.++++++.+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 3456677777654444444433322221 223456889999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 014243 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (428)
Q Consensus 190 ~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V 269 (428)
.|+.++.++.+|..+ ....|++|||||+|.+...++. ...... +.+...|+.+++ +. ....++
T Consensus 279 ~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~-~~~~~~-~~~~~~Ll~ll~--------g~---~~~~~v 341 (806)
T 1ypw_A 279 AGESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREK-THGEVE-RRIVSQLLTLMD--------GL---KQRAHV 341 (806)
T ss_dssp TTHHHHHHHHHHHHH----HHHCSEEEEEESGGGTSCTTSC-CCSHHH-HHHHHHHHHHHH--------SS---CTTSCC
T ss_pred hhhHHHHHHHHHHHH----HhcCCcEEEeccHHHhhhcccc-ccchHH-HHHHHHHHHHhh--------hh---cccccE
Confidence 999999999999999 7778999999999999988752 222222 334445666666 33 344678
Q ss_pred eEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 270 ~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
.+|+|||+++.+|+++.|++||++.+. .|+.++|.+|++.++... +.+...++..+.+|+++++..
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~ 413 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHH
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHH
Confidence 999999999999999999999999888 999999999999887654 455778999999999999874
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.84 E-value=3.2e-23 Score=215.30 Aligned_cols=176 Identities=10% Similarity=0.027 Sum_probs=114.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC--CCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg--~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
.+..+|+++|||||||||||++|+++|++++ .+|+.++++++.++|.|++++ +++.|+.|.. .+...||||||||+
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEi 135 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEV 135 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEE
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEech
Confidence 3556789999999999999999999999999 999999999999999999988 8889987621 13568999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHH------------------HHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh
Q 014243 222 DAGAGRMGGTTQYTVNNQMVNAT------------------LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 283 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~------------------L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ 283 (428)
|+++++|....... ........ ++.-++ . ........++|++|||+++.+|+
T Consensus 136 d~l~~~r~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~--------~-~~~~~~~~v~i~attn~~~~ld~ 205 (456)
T 2c9o_A 136 TELTPCETENPMGG-YGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ--------K-ERVEAGDVIYIEANSGAVKRQGR 205 (456)
T ss_dssp EEEEEC---------------CEEEEEEETTEEEEEEECHHHHHHHH--------H-TTCCTTEEEEEETTTCCEEEEEE
T ss_pred hhcccccCCCCCCC-cchHHHHHHHHHhccccchhHhhhHHHHHHHh--------h-ccCCCCCEEEEEcCCCCcccCCh
Confidence 99998875321100 00000000 111111 0 00122344566699999999999
Q ss_pred hhcCCCCceE----EEeCCC--HHHHHHHHHHhccCCCCCHhHHHHHhcCCChhhHHhH
Q 014243 284 PLIRDGRMEK----FYWAPT--REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 284 ALlR~gRfd~----~i~~P~--~eeR~~Il~~~~~~~~l~~~~la~lt~gfsgadL~~~ 336 (428)
+++|+||||+ .+..|+ .++|.+|++.+... +.+.+++.++| |+||..+
T Consensus 206 a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~---dl~~~a~~t~g--gadl~~l 259 (456)
T 2c9o_A 206 CDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---DLDVANARPQG--GQDILSM 259 (456)
T ss_dssp ETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH---HHHHTC--------------
T ss_pred hhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH---HHHHHHHhCCC--hhHHHHH
Confidence 9999999999 333664 46788887665532 46667777888 8887643
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=9.7e-19 Score=168.39 Aligned_cols=168 Identities=12% Similarity=0.120 Sum_probs=115.8
Q ss_pred hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChH----HHHHHHHHHHHHHHHhCCceE
Q 014243 140 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKMCC 215 (428)
Q Consensus 140 ~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~----~~Ir~~F~~A~~~i~~~~p~I 215 (428)
.+...+..++.++|||||||||||++|+++|++++.+++.+++++ .+.|... ..++..|..+ ....++|
T Consensus 55 ~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~----~~~~~~v 127 (272)
T 1d2n_A 55 QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDA----YKSQLSC 127 (272)
T ss_dssp HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHH----HTSSEEE
T ss_pred HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHH----HhcCCcE
Confidence 333345567899999999999999999999999999999987764 3444433 4567778777 6778999
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEE
Q 014243 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 295 (428)
Q Consensus 216 LfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i 295 (428)
|||||+|.+.+.+.... ... ..+.++|..+++ +. .....++.||+|||.++.+++..++ +||+..+
T Consensus 128 l~iDEid~l~~~~~~~~--~~~-~~~l~~L~~~~~--------~~--~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i 193 (272)
T 1d2n_A 128 VVVDDIERLLDYVPIGP--RFS-NLVLQALLVLLK--------KA--PPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTI 193 (272)
T ss_dssp EEECCHHHHTTCBTTTT--BCC-HHHHHHHHHHTT--------CC--CSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEE
T ss_pred EEEEChhhhhccCCCCh--hHH-HHHHHHHHHHhc--------Cc--cCCCCCEEEEEecCChhhcchhhhh-cccceEE
Confidence 99999999977653221 112 233345555555 11 1133567899999999988884333 5999998
Q ss_pred eCCCHHHHHHHHHHhccCCCCCHhH---HHHHhcCC
Q 014243 296 WAPTREDRIGVCKGIFRNDNVADDD---IVKLVDTF 328 (428)
Q Consensus 296 ~~P~~eeR~~Il~~~~~~~~l~~~~---la~lt~gf 328 (428)
.+|+..+|.+|...+.....++.+. +++.+.||
T Consensus 194 ~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 194 HVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp ECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTS
T ss_pred cCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Confidence 8777766666655444444455444 55555554
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=4.2e-18 Score=165.80 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=116.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC-------CCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg-------~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfI 218 (428)
.+++..+|||||||||||++|+++|++++ .+++.++++++.+.+.|.....++..|..+ .++||||
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~i 136 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLFI 136 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEEE
Confidence 34567899999999999999999999973 389999999999999999988888888776 4689999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCCceE
Q 014243 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEK 293 (428)
Q Consensus 219 DEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gRfd~ 293 (428)
||+|.+...+.+.. ....+...|+++++ ....++.+|+|||... .++|+|++ ||+.
T Consensus 137 DEid~l~~~~~~~~----~~~~~~~~Ll~~l~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~ 197 (309)
T 3syl_A 137 DEAYYLYRPDNERD----YGQEAIEILLQVME-------------NNRDDLVVILAGYADRMENFFQSNPGFRS--RIAH 197 (309)
T ss_dssp ETGGGSCCCC---C----CTHHHHHHHHHHHH-------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEE
T ss_pred EChhhhccCCCccc----ccHHHHHHHHHHHh-------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCe
Confidence 99999986653211 12334445666666 2346789999998754 35789987 8987
Q ss_pred EEe--CCCHHHHHHHHHHhccCCC--CCHhHHHHH
Q 014243 294 FYW--APTREDRIGVCKGIFRNDN--VADDDIVKL 324 (428)
Q Consensus 294 ~i~--~P~~eeR~~Il~~~~~~~~--l~~~~la~l 324 (428)
.+. .|+.+++.+|++.++...+ ++.+.+..+
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l 232 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETAL 232 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 777 9999999999999887544 444443333
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.75 E-value=3.8e-18 Score=181.27 Aligned_cols=167 Identities=19% Similarity=0.285 Sum_probs=113.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccccc---------CCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s---------~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfI 218 (428)
.+..+||+||||||||++|++||..++.+++.++.+.+.+ .|+|.....+...|..+ ....| ||||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a----~~~~~-vl~l 181 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA----GKLNP-VFLL 181 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTT----CSSSE-EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh----hccCC-EEEE
Confidence 4668999999999999999999999999999988876543 56666666666677766 44455 9999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc--CCCCCceEEEEeCCCCCCChhhcCCCCceEEEe
Q 014243 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296 (428)
Q Consensus 219 DEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~--~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~ 296 (428)
||+|++...+.+. ....|++++|..++..+...+.. ....++.+|+|||+++.|+++|+| ||+.+..
T Consensus 182 DEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~vi~~ 250 (543)
T 3m6a_A 182 DEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEIINI 250 (543)
T ss_dssp EESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEEEEC
T ss_pred hhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcceeee
Confidence 9999997765322 23456777775443333222221 233788999999999999999998 8976544
Q ss_pred -CCCHHHHHHHHHHhccC------------CCCCHhHHHHHhcCCCh
Q 014243 297 -APTREDRIGVCKGIFRN------------DNVADDDIVKLVDTFPG 330 (428)
Q Consensus 297 -~P~~eeR~~Il~~~~~~------------~~l~~~~la~lt~gfsg 330 (428)
.|+.+++.+|++.++.. ..++.+.+..++.+|++
T Consensus 251 ~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~ 297 (543)
T 3m6a_A 251 AGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR 297 (543)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence 99999999999887621 13456667777766664
No 35
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.70 E-value=1.6e-17 Score=172.33 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=59.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccccc-CCCCC-hHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s-~~~Ge-~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~ 225 (428)
+|+++||+||||||||++|+++|++++.+|+.++++.+.+ +|+|+ .++.++.+|..|... +++||+|...
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~--------~~~De~d~~~ 120 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL--------VRQQEIAKNR 120 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH--------HHHHHHHSCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc--------chhhhhhhhh
Confidence 5789999999999999999999999999999999999988 69995 789999999998332 3489998875
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE-eCCCCCCChhhcCCCCceEEEe--CCCHH-
Q 014243 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT-GNDFSTLYAPLIRDGRMEKFYW--APTRE- 301 (428)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~T-TN~~~~Ld~ALlR~gRfd~~i~--~P~~e- 301 (428)
.... .....+++.+ |+..+| |.. ....| +++ ||+++.||+||+|+||||+.|+ +|+..
T Consensus 121 ~~~~----~~~e~rvl~~-LL~~~d--------g~~---~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~ 182 (444)
T 1g41_A 121 ARAE----DVAEERILDA-LLPPAK--------NQW---GEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccch----hhHHHHHHHH-HHHHhh--------ccc---ccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCcc
Confidence 4432 1223344443 333333 552 22333 555 9999999999999999999999 88877
Q ss_pred HHHHHH
Q 014243 302 DRIGVC 307 (428)
Q Consensus 302 eR~~Il 307 (428)
.|.+|+
T Consensus 183 ~~~ei~ 188 (444)
T 1g41_A 183 MGVEIM 188 (444)
T ss_dssp ------
T ss_pred chhhhh
Confidence 677775
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.69 E-value=5.7e-17 Score=156.94 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=112.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccccc-CCCCC-hHHHHHHHHHHHHHHHH-hCCceEEEeccccc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIK-KGKMCCLMINDLDA 223 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s-~~~Ge-~~~~Ir~~F~~A~~~i~-~~~p~ILfIDEiDa 223 (428)
..|.++||+||||||||++|+++|+.++.+++.++++.+.+ .|+|. ....++.++..+...+. ...++||||||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 35779999999999999999999999999999999998876 56664 34556666654311112 23478999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE----eCCCCCCChhhcCCCCceEEEe--C
Q 014243 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYW--A 297 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~T----TN~~~~Ld~ALlR~gRfd~~i~--~ 297 (428)
+...... .........+...|+.++++.......+ .....++.+|+| ++.+..++++|++ ||+..+. .
T Consensus 128 l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~ 201 (310)
T 1ofh_A 128 ICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHG---MVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA 201 (310)
T ss_dssp GSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTE---EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred cCccccc-cccchhHHHHHHHHHHHhcCCeEecccc---cccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence 9876532 2233444455667777777322111111 123467888988 4678899999986 8987666 8
Q ss_pred CCHHHHHHHHHH
Q 014243 298 PTREDRIGVCKG 309 (428)
Q Consensus 298 P~~eeR~~Il~~ 309 (428)
|+.+++.+|++.
T Consensus 202 ~~~~~~~~il~~ 213 (310)
T 1ofh_A 202 LSAADFERILTE 213 (310)
T ss_dssp CCHHHHHHHHHS
T ss_pred cCHHHHHHHHHh
Confidence 899999999984
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.68 E-value=1.4e-17 Score=167.16 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=111.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccC-CCCCh-HHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~-~~Ge~-~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~ 225 (428)
++.++||+||||||||++|++||+.++.+|+.++++++... |.|.. ...++..|..+...+....++||||||+|++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 57899999999999999999999999999999999988754 77765 55667777665333344568999999999998
Q ss_pred CCCCCCc-ccchhhHHHHHHHHHhhcCCccccCCCcc---------ccCCCCCceEEEEeCCC----------CC-----
Q 014243 226 GRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLPGMY---------NKEENPRVPIIVTGNDF----------ST----- 280 (428)
Q Consensus 226 ~~r~~~~-~~~~~~~~v~~~L~~lld~~~~v~l~~~~---------~~~~~~~V~VI~TTN~~----------~~----- 280 (428)
..+.+.. ......+.+...|+.+++. ..+.+.... ......++++|+|+|.. ..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg-~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~g 208 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEG-TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIG 208 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHC-C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC---
T ss_pred ccccccccccccchHHHHHHHHHHhcC-ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCC
Confidence 7764222 2333344577788888882 221111100 01233566777777753 11
Q ss_pred ------------------------------CChhhcCCCCceEEEe--CCCHHHHHHHHHH
Q 014243 281 ------------------------------LYAPLIRDGRMEKFYW--APTREDRIGVCKG 309 (428)
Q Consensus 281 ------------------------------Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~ 309 (428)
+.|+|+. ||+.++. .|+.+++.+|+..
T Consensus 209 f~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 209 FGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ---------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred ccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 7888885 9999986 8899999999875
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.68 E-value=1.7e-15 Score=150.94 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=98.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CeEEecccccccCCCCC------------------------------
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGE------------------------------ 192 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~s~L~s~~~Ge------------------------------ 192 (428)
+..++.++|||||||||||++|+++|++++. +++.+++..+.+.+.+.
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 145 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID 145 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence 3345689999999999999999999999885 78888877655544433
Q ss_pred -------------------hHHHHHHHHHHHHHHHH-hC----CceEEEecccccccCCCCCCcccchhhHHHHHHHHHh
Q 014243 193 -------------------PAKLIRQRYREAADIIK-KG----KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 248 (428)
Q Consensus 193 -------------------~~~~Ir~~F~~A~~~i~-~~----~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~l 248 (428)
....++..|..+..... .+ .|+||||||+|.+.. .....|+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-------------~~~~~L~~~ 212 (368)
T 3uk6_A 146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-------------ESFSFLNRA 212 (368)
T ss_dssp HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------------HHHHHHHHH
T ss_pred hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------------HHHHHHHHH
Confidence 23345555555433222 22 278999999997632 122345455
Q ss_pred hcCCccccCCCccccCCCCCceEEEEe-----------CCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCC-
Q 014243 249 ADNPTCVQLPGMYNKEENPRVPIIVTG-----------NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN- 315 (428)
Q Consensus 249 ld~~~~v~l~~~~~~~~~~~V~VI~TT-----------N~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~- 315 (428)
++ .....+++++|. |.+..++++|++ ||..+.. .|+.+++.+|++..+...+
T Consensus 213 le-------------~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 213 LE-------------SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp TT-------------CTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred hh-------------CcCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 54 122233333333 358899999998 7877544 8899999999998876543
Q ss_pred -CCHhH
Q 014243 316 -VADDD 320 (428)
Q Consensus 316 -l~~~~ 320 (428)
++.+.
T Consensus 278 ~~~~~~ 283 (368)
T 3uk6_A 278 EMSEDA 283 (368)
T ss_dssp CBCHHH
T ss_pred CCCHHH
Confidence 44443
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=1.1e-16 Score=142.29 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=95.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 214 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ 214 (428)
..+..++|+||||||||++++++++++ +.+++.++.+.+. ..+.|.....++.++... .+...++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 117 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL---AKQEGNV 117 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH---HHSTTTE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHH---hhcCCCe
Confidence 346789999999999999999999996 7788888877765 334455555666666654 1356789
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCC
Q 014243 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 289 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~g 289 (428)
||||||+|.+...+........ ...|..+++ ..++.+|+|||.+. .++++++|
T Consensus 118 vl~iDe~~~l~~~~~~~~~~~~-----~~~l~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~-- 175 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGAMDA-----GNMLKPALA---------------RGELHCVGATTLDEYRQYIEKDAALER-- 175 (195)
T ss_dssp EEEEETGGGGTT------CCCC-----HHHHHHHHH---------------TTSCCEEEEECHHHHHHHTTTCHHHHT--
T ss_pred EEEEeCHHHHhccCcccchHHH-----HHHHHHhhc---------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--
Confidence 9999999998765421111111 122222222 24678999999887 78999998
Q ss_pred CceEEEe-CCCHHHHHHHH
Q 014243 290 RMEKFYW-APTREDRIGVC 307 (428)
Q Consensus 290 Rfd~~i~-~P~~eeR~~Il 307 (428)
||+.+.. .|+.++|.+|+
T Consensus 176 r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TEEEEECCCCCHHHHHTTC
T ss_pred HhceeecCCCCHHHHHHHh
Confidence 8986444 99999998875
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.64 E-value=5.8e-15 Score=145.71 Aligned_cols=157 Identities=13% Similarity=0.081 Sum_probs=107.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
.++..+||+||||||||++|+++|++++.+|+.++++.+. ....+...+. ....+++|||||||.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~------~~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILT------NLSEGDILFIDEIHRLSP 120 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHH------TCCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHH------hccCCCEEEEechhhcCH
Confidence 3566899999999999999999999999999999987653 1222222222 246789999999998742
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCc-----cccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014243 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-----YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~-----~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
.....|+..+++.....+.+. ......+++.+|++||+...++++|++ ||+..+. .|+
T Consensus 121 -------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~ 185 (338)
T 3pfi_A 121 -------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYK 185 (338)
T ss_dssp -------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred -------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcC
Confidence 123345555553221111110 000122368999999999999999987 8877777 899
Q ss_pred HHHHHHHHHHhccCCC--CCHhHHHHHhcCCCh
Q 014243 300 REDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (428)
Q Consensus 300 ~eeR~~Il~~~~~~~~--l~~~~la~lt~gfsg 330 (428)
.+++..|++.++...+ ++.+.+..+...+.|
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G 218 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRS 218 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc
Confidence 9999999998876544 455556556554444
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.60 E-value=1.1e-14 Score=143.20 Aligned_cols=140 Identities=19% Similarity=0.307 Sum_probs=97.8
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH-hCCc
Q 014243 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKM 213 (428)
Q Consensus 135 ~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~-~~~p 213 (428)
...++++.. .+.|..+|++||||||||++|+++|++++.+++.+++++.. ...++..+........ .+.+
T Consensus 36 ~~l~~~l~~--~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~ 106 (324)
T 3u61_B 36 ETFKSITSK--GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQ 106 (324)
T ss_dssp HHHHHHHHT--TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCE
T ss_pred HHHHHHHHc--CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCC
Confidence 344455542 34677899999999999999999999999999999977532 3445554444311111 2378
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceE
Q 014243 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~ 293 (428)
+||||||+|.+.+. .....|+.+++ ....++.+|+|||++..++++|++ ||..
T Consensus 107 ~vliiDEi~~l~~~------------~~~~~L~~~le-------------~~~~~~~iI~~~n~~~~l~~~l~s--R~~~ 159 (324)
T 3u61_B 107 KVIVIDEFDRSGLA------------ESQRHLRSFME-------------AYSSNCSIIITANNIDGIIKPLQS--RCRV 159 (324)
T ss_dssp EEEEEESCCCGGGH------------HHHHHHHHHHH-------------HHGGGCEEEEEESSGGGSCTTHHH--HSEE
T ss_pred eEEEEECCcccCcH------------HHHHHHHHHHH-------------hCCCCcEEEEEeCCccccCHHHHh--hCcE
Confidence 99999999987421 12234545555 223567899999999999999998 7765
Q ss_pred EEe-CCCHHHHHHHHHHh
Q 014243 294 FYW-APTREDRIGVCKGI 310 (428)
Q Consensus 294 ~i~-~P~~eeR~~Il~~~ 310 (428)
+.. .|+.++|.+|++.+
T Consensus 160 i~~~~~~~~e~~~il~~~ 177 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQM 177 (324)
T ss_dssp EECCCCCHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHH
Confidence 444 89999987765443
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.59 E-value=4.1e-15 Score=146.49 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=101.0
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHh
Q 014243 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 210 (428)
Q Consensus 134 ~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~ 210 (428)
...++.+...++ +.+.+++||||||||||++|+++++++ +.+++.+++.++...+.+.........|... .
T Consensus 23 ~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~ 96 (324)
T 1l8q_A 23 YEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNM-----Y 96 (324)
T ss_dssp HHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHH-----H
T ss_pred HHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHH-----h
Confidence 344555555554 346789999999999999999999998 8999999987765332221111111122222 2
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC---CCChhhcC
Q 014243 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIR 287 (428)
Q Consensus 211 ~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~---~Ld~ALlR 287 (428)
..++||||||++.+...+. ..+.++.+++ .. ......+||+++|.+. .++++|++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~-----------~~~~l~~~l~--------~~---~~~~~~iii~~~~~~~~l~~l~~~L~s 154 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKER-----------TQIEFFHIFN--------TL---YLLEKQIILASDRHPQKLDGVSDRLVS 154 (324)
T ss_dssp HTCSEEEEECGGGGTTCHH-----------HHHHHHHHHH--------HH---HHTTCEEEEEESSCGGGCTTSCHHHHH
T ss_pred cCCCEEEEcCcccccCChH-----------HHHHHHHHHH--------HH---HHCCCeEEEEecCChHHHHHhhhHhhh
Confidence 3488999999998765321 1112222222 00 0112234444445554 68999987
Q ss_pred CCCce--EEEe-CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCC
Q 014243 288 DGRME--KFYW-APTREDRIGVCKGIFRND--NVADDDIVKLVDTF 328 (428)
Q Consensus 288 ~gRfd--~~i~-~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gf 328 (428)
||+ ..+. .|+.++|.+|++.++... .++.+.+..+....
T Consensus 155 --R~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 155 --RFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp --HHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred --cccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 775 5555 448999999999887643 45555555444444
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.58 E-value=7.9e-15 Score=143.35 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=101.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~ 227 (428)
.+..+||+||||||||++|++++++++.+++.++++.+.. ...+...|..+ ...+++|||||+|.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~ 105 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ 105 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-----ccCCCEEEEECCcccccc
Confidence 4678999999999999999999999999999988876532 22222222211 357899999999876421
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-----CCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014243 228 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 228 r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-----~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
....|+.++++.....+.+.... ....++.+|+|||++..++++|++ ||+..+. .|+.
T Consensus 106 -------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~ 170 (324)
T 1hqc_A 106 -------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTP 170 (324)
T ss_dssp -------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCH
T ss_pred -------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCH
Confidence 12334444442211111111000 112468899999999999999986 8865555 8999
Q ss_pred HHHHHHHHHhccCC--CCCHhHHHHHh
Q 014243 301 EDRIGVCKGIFRND--NVADDDIVKLV 325 (428)
Q Consensus 301 eeR~~Il~~~~~~~--~l~~~~la~lt 325 (428)
+++.++++.++... .++.+.+..+.
T Consensus 171 ~e~~~~l~~~~~~~~~~~~~~~~~~l~ 197 (324)
T 1hqc_A 171 EELAQGVMRDARLLGVRITEEAALEIG 197 (324)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999998887654 34555444443
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.58 E-value=6.2e-15 Score=131.03 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=87.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc--cCCCCChHHHHHHHHHHHHHHHH-hCCce
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMC 214 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~-~~~p~ 214 (428)
.+..+||+||||||||++|+++++++ +.+++.++...+. ..+.|.....++..+..+ . ...|+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 117 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEV----QDAEGQV 117 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHH----HHTTTSE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHH----HhcCCce
Confidence 46789999999999999999999997 7778888776664 234455555566666655 4 34789
Q ss_pred EEEecccccccCCCC-CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCC
Q 014243 215 CLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRD 288 (428)
Q Consensus 215 ILfIDEiDa~~~~r~-~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~ 288 (428)
||||||+|.+...+. ...+... ...|..+++ ..++.+|+|||.+. .++++++|
T Consensus 118 vl~iDe~~~l~~~~~~~~~~~~~-----~~~l~~~~~---------------~~~~~ii~~~~~~~~~~~~~~~~~l~~- 176 (187)
T 2p65_A 118 VMFIDEIHTVVGAGAVAEGALDA-----GNILKPMLA---------------RGELRCIGATTVSEYRQFIEKDKALER- 176 (187)
T ss_dssp EEEETTGGGGSSSSSSCTTSCCT-----HHHHHHHHH---------------TTCSCEEEEECHHHHHHHTTTCHHHHH-
T ss_pred EEEEeCHHHhcccccccccchHH-----HHHHHHHHh---------------cCCeeEEEecCHHHHHHHHhccHHHHH-
Confidence 999999999975543 1111111 122222222 25678999999876 68999998
Q ss_pred CCceEEEe-CCC
Q 014243 289 GRMEKFYW-APT 299 (428)
Q Consensus 289 gRfd~~i~-~P~ 299 (428)
||+.+.. .|+
T Consensus 177 -R~~~i~i~~p~ 187 (187)
T 2p65_A 177 -RFQQILVEQPS 187 (187)
T ss_dssp -HEEEEECCSCC
T ss_pred -hcCcccCCCCC
Confidence 9997443 553
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.58 E-value=1.4e-14 Score=150.90 Aligned_cols=143 Identities=18% Similarity=0.215 Sum_probs=98.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 217 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILf 217 (428)
.+.++||+||||||||++|+++|+.+ +.+++.++++ .+|.|+.+..++.+|..+ ....|+|||
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~----~~~~~~iLf 272 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEI----RQAGNIILF 272 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEEE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHH----HhcCCeEEE
Confidence 35588999999999999999999996 7788888877 677888778888899888 777899999
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCCce
Q 014243 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRME 292 (428)
Q Consensus 218 IDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gRfd 292 (428)
|| +.. .....|...+ ....+.+|++||.++ .+|++|+| ||.
T Consensus 273 iD------~~~-----------~a~~~L~~~L---------------~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~ 318 (468)
T 3pxg_A 273 ID------AAI-----------DASNILKPSL---------------ARGELQCIGATTLDEYRKYIEKDAALER--RFQ 318 (468)
T ss_dssp EC------C-------------------CCCT---------------TSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE
T ss_pred Ee------Cch-----------hHHHHHHHhh---------------cCCCEEEEecCCHHHHHHHhhcCHHHHH--hCc
Confidence 99 110 0112221111 234689999999998 79999999 998
Q ss_pred EEEe-CCCHHHHHHHHHHhccC----CC--CCHhH---HHHHhcCCChh
Q 014243 293 KFYW-APTREDRIGVCKGIFRN----DN--VADDD---IVKLVDTFPGQ 331 (428)
Q Consensus 293 ~~i~-~P~~eeR~~Il~~~~~~----~~--l~~~~---la~lt~gfsga 331 (428)
.+.. .|+.+++.+|++.+... .+ ++.+. ++.++.+|.+.
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Confidence 7555 99999999999988755 23 33332 56666666543
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.56 E-value=3.3e-14 Score=147.65 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=95.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCC
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 229 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~ 229 (428)
..+|||||||||||++|++||+.++.+|+.+++.. .+.+.++..|..+........++||||||||.+.....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q 123 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ 123 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH
Confidence 58999999999999999999999999999988643 23566788888875554567899999999998744321
Q ss_pred CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhcCCCCceEEEe-CCCHHHHHHH
Q 014243 230 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGV 306 (428)
Q Consensus 230 ~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT--N~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~I 306 (428)
..|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.+++..|
T Consensus 124 -------------~~LL~~le---------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 124 -------------DAFLPHIE---------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp --------------CCHHHHH---------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHH
T ss_pred -------------HHHHHHHh---------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHH
Confidence 12333333 1346777777 555689999998 7776656 8999999999
Q ss_pred HHHhccC
Q 014243 307 CKGIFRN 313 (428)
Q Consensus 307 l~~~~~~ 313 (428)
++.++..
T Consensus 174 l~~~l~~ 180 (447)
T 3pvs_A 174 LTQAMED 180 (447)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9888765
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.55 E-value=9e-14 Score=135.04 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=102.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCC------------CCChHHHHHHHHHHHHHHHHhCCc
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------------AGEPAKLIRQRYREAADIIKKGKM 213 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~------------~Ge~~~~Ir~~F~~A~~~i~~~~p 213 (428)
+..+||+||||||||++|+++|+.+ +.+++.++++.+.... .|.... ..+..+ +.....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~~---~~~~~~ 120 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLTEA---VRRRPY 120 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHHHH---HHHCSS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHHHH---HHhCCC
Confidence 3579999999999999999999997 4568888877654321 111100 112222 244556
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC----------------
Q 014243 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND---------------- 277 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~---------------- 277 (428)
+||||||+|.+.. .+...|+.++++..... .........++++|+|||.
T Consensus 121 ~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~--~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~ 185 (311)
T 4fcw_A 121 SVILFDAIEKAHP-------------DVFNILLQMLDDGRLTD--SHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYE 185 (311)
T ss_dssp EEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEC--TTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSS
T ss_pred eEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEc--CCCCEEECCCcEEEEecccCHHHHHhhhcccccHH
Confidence 9999999987632 23345666666332221 1111122356789999999
Q ss_pred ----------CCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccC-----------CCCCHhHHHHHhc-CC
Q 014243 278 ----------FSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN-----------DNVADDDIVKLVD-TF 328 (428)
Q Consensus 278 ----------~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~-----------~~l~~~~la~lt~-gf 328 (428)
...++++|++ ||+..+. .|+.+++..|++.++.. ..++.+.+..+.. +|
T Consensus 186 ~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (311)
T 4fcw_A 186 RIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGY 258 (311)
T ss_dssp THHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCC
Confidence 5578999985 9987777 88999999998877643 1345555655554 44
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.54 E-value=1.9e-14 Score=148.93 Aligned_cols=166 Identities=15% Similarity=0.235 Sum_probs=100.7
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEecccccccCCCCChHHHHHHHHHHHHHH
Q 014243 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI 207 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~ 207 (428)
....++.+...++. +..++||||||||||+||++|++++ +.+++.+++.++...+.+.........|...
T Consensus 116 a~~~~~~~a~~~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~--- 190 (440)
T 2z4s_A 116 AYHAALEVAKHPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREK--- 190 (440)
T ss_dssp HHHHHHHHHHSTTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHH---
T ss_pred HHHHHHHHHhCCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHH---
Confidence 34445555555553 6789999999999999999999998 8889999887664322111000000112221
Q ss_pred HHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CCC---CCh
Q 014243 208 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYA 283 (428)
Q Consensus 208 i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-~~~---Ld~ 283 (428)
....++||||||++.+.+... . ...+..++..+.+ .+..||+||++ +.. +++
T Consensus 191 -~~~~~~vL~IDEi~~l~~~~~--~-----q~~l~~~l~~l~~----------------~~~~iIitt~~~~~~l~~l~~ 246 (440)
T 2z4s_A 191 -YRKKVDILLIDDVQFLIGKTG--V-----QTELFHTFNELHD----------------SGKQIVICSDREPQKLSEFQD 246 (440)
T ss_dssp -HTTTCSEEEEECGGGGSSCHH--H-----HHHHHHHHHHHHT----------------TTCEEEEEESSCGGGCSSCCH
T ss_pred -hcCCCCEEEEeCcccccCChH--H-----HHHHHHHHHHHHH----------------CCCeEEEEECCCHHHHHHHHH
Confidence 122789999999998765321 1 1122222211111 23456666765 443 889
Q ss_pred hhcCCCCce--EEEe--CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCCC
Q 014243 284 PLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFP 329 (428)
Q Consensus 284 ALlR~gRfd--~~i~--~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfs 329 (428)
+|++ ||+ ..+. .|+.++|.+|++..+... .++.+.+..++....
T Consensus 247 ~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~ 296 (440)
T 2z4s_A 247 RLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVD 296 (440)
T ss_dssp HHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCC
T ss_pred HHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Confidence 9987 664 4444 999999999998887533 345444444443333
No 49
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.53 E-value=1.2e-13 Score=151.48 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=104.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~I 215 (428)
.+.++||+||||||||++|+++|+.+ +..++.++.+.+. .++.|+.+..++.+|..+ ....++|
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~----~~~~~~i 281 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNSI 281 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH----SSSSCEE
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHH----HhcCCeE
Confidence 56789999999999999999999986 6667777777776 468899999999999888 7677899
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhcCCCC
Q 014243 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGR 290 (428)
Q Consensus 216 LfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-----~~Ld~ALlR~gR 290 (428)
|||||+|.+.+....... .......|..++ ...++.+|++||.+ -.+|++|.| |
T Consensus 282 L~IDEi~~l~~~~~~~~~----~~~~~~~L~~~l---------------~~~~~~~I~at~~~~~~~~~~~d~aL~~--R 340 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAASGG----QVDAANLIKPLL---------------SSGKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_dssp EEETTTTTTTTSCCSSSC----HHHHHHHHSSCS---------------SSCCCEEEEEECHHHHHCCCCCTTSSGG--G
T ss_pred EEEechHHHhhcCCCCcc----hHHHHHHHHHHH---------------hCCCeEEEEEeCchHHhhhhhcCHHHHh--C
Confidence 999999999876542111 122223332222 23567899999964 368899998 8
Q ss_pred ceEEEe-CCCHHHHHHHHHHhcc
Q 014243 291 MEKFYW-APTREDRIGVCKGIFR 312 (428)
Q Consensus 291 fd~~i~-~P~~eeR~~Il~~~~~ 312 (428)
|+.+.. .|+.++|.+|++.+..
T Consensus 341 f~~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 341 FQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCHHHHHHHHHHHHH
Confidence 986544 9999999999887653
No 50
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.53 E-value=1.8e-13 Score=124.17 Aligned_cols=141 Identities=19% Similarity=0.244 Sum_probs=92.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh-----CCCeEEecccccccCCCCChHHHHHHHHHHHHHH--HHhCCceEEEeccccc
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA 223 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~--i~~~~p~ILfIDEiDa 223 (428)
.++|+||||||||++++++++++ ...++.++.+... ....++..+...... .....++||||||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT------CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc------ChHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 49999999999999999999986 3456666665332 112222322222000 0136789999999988
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHH
Q 014243 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 302 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~ee 302 (428)
+... ....|..+++ ....++.+|+|||.+..+++++.+ |+..+.. .|+.++
T Consensus 114 l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~~~~~~~~~~~l~~--r~~~i~~~~~~~~~ 165 (226)
T 2chg_A 114 LTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEA 165 (226)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHH
T ss_pred cCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcCHHHHH--hCceeecCCCCHHH
Confidence 6432 1223444444 223567899999999999999987 7774444 889999
Q ss_pred HHHHHHHhccCC--CCCHhHHHHHh
Q 014243 303 RIGVCKGIFRND--NVADDDIVKLV 325 (428)
Q Consensus 303 R~~Il~~~~~~~--~l~~~~la~lt 325 (428)
+.++++.++... .++.+.+..+.
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~l~ 190 (226)
T 2chg_A 166 MKKRLLEICEKEGVKITEDGLEALI 190 (226)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999998877533 34554444443
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.53 E-value=3.5e-14 Score=158.06 Aligned_cols=139 Identities=19% Similarity=0.194 Sum_probs=92.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc--cCCCCChHHHHHHHHHHHHHHHHh-CCce
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKMC 214 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~~-~~p~ 214 (428)
.+.++||+||||||||++|+++|+.+ +.+++.++.+.+. .++.|+.+..++.+|..+ .. ..|+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~----~~~~~~~ 265 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV----VQSQGEV 265 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH----HTTCSSE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHH----HhcCCCe
Confidence 35578999999999999999999997 8889999998886 568888888899999887 64 4789
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC----CCChhhcCCCC
Q 014243 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIRDGR 290 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~----~Ld~ALlR~gR 290 (428)
||||||++.+.+....... ......|..++. ..++.+|++||.++ .+|++|+| |
T Consensus 266 iL~IDEi~~l~~~~~~~g~-----~~~~~~L~~~l~---------------~~~i~~I~at~~~~~~~~~~d~aL~r--R 323 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKAEGA-----VDAGNMLKPALA---------------RGELRLIGATTLDEYREIEKDPALER--R 323 (854)
T ss_dssp EEEECCC------------------------HHHHH---------------TTCCCEEEEECHHHHHHHTTCTTTCS--C
T ss_pred EEEEecHHHHhccCCccch-----HHHHHHHHHHHh---------------CCCeEEEEecCchHHhhhccCHHHHh--C
Confidence 9999999998765431111 112222333332 24678999999875 58999998 8
Q ss_pred ceEEEe-CCCHHHHHHHHHHhcc
Q 014243 291 MEKFYW-APTREDRIGVCKGIFR 312 (428)
Q Consensus 291 fd~~i~-~P~~eeR~~Il~~~~~ 312 (428)
|+.+.. .|+.+++.+|++.++.
T Consensus 324 f~~i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 324 FQPVYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CCCEEECCCCHHHHHHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHhhhh
Confidence 887555 9999999999986654
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.53 E-value=6e-14 Score=154.05 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=89.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 217 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILf 217 (428)
.+.++||+||||||||++|+++|+.+ +.+++.++. ..+|.|+.+..++.+|..+ ....|+|||
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~----~~~~~~iLf 272 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEI----RQAGNIILF 272 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEEE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHH----HhcCCEEEE
Confidence 45679999999999999999999997 778887776 5667888888899999998 778899999
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCCce
Q 014243 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRME 292 (428)
Q Consensus 218 IDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gRfd 292 (428)
|| +.. -....|... -....+.+|+|||... .+|++|+| ||.
T Consensus 273 iD------~~~-----------~~~~~L~~~---------------l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~ 318 (758)
T 3pxi_A 273 ID------AAI-----------DASNILKPS---------------LARGELQCIGATTLDEYRKYIEKDAALER--RFQ 318 (758)
T ss_dssp EC------C-------------------CCC---------------TTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE
T ss_pred Ec------Cch-----------hHHHHHHHH---------------HhcCCEEEEeCCChHHHHHHhhccHHHHh--hCc
Confidence 99 110 011122111 1245689999999998 79999999 897
Q ss_pred EEEe-CCCHHHHHHHHHHhccC
Q 014243 293 KFYW-APTREDRIGVCKGIFRN 313 (428)
Q Consensus 293 ~~i~-~P~~eeR~~Il~~~~~~ 313 (428)
.+.. .|+.+++.+|++.+...
T Consensus 319 ~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 319 PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEECCCCCHHHHHHHHHHTTTT
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 6444 99999999999977654
No 53
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.52 E-value=2.4e-14 Score=144.20 Aligned_cols=129 Identities=16% Similarity=0.284 Sum_probs=75.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~-s~~~Ge~-~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
+.+..+||+||||||||++|+++|+.++.+++.++++.+. +.+.|.. ...+...+..+...+....++||||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 3467899999999999999999999999999999988875 4566664 4455566554422223457899999999999
Q ss_pred cCCCCCCc-ccchhhHHHHHHHHHhhcCCccccCC--Cc-------cccCCCCCceEEEEeC
Q 014243 225 AGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLP--GM-------YNKEENPRVPIIVTGN 276 (428)
Q Consensus 225 ~~~r~~~~-~~~~~~~~v~~~L~~lld~~~~v~l~--~~-------~~~~~~~~V~VI~TTN 276 (428)
...+.+.. ........+...|+.+++.... .++ +. .......++.+|+|||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~ 210 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEGSLV-NIPPKGGRKHPEGNFIQIDTSDILFICAGA 210 (376)
T ss_dssp --------------CHHHHHHHHHHHHCCEE-C---------------CEECTTCEEEEEEC
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhccce-ecccccccccCCcceEEEecCCeEEEecCC
Confidence 87653211 1122223356677788874321 110 00 0001235678889988
No 54
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.5e-13 Score=136.84 Aligned_cols=137 Identities=11% Similarity=0.073 Sum_probs=93.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccccC----------C------CCChHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------N------AGEPAKLIRQR 200 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~s~----------~------~Ge~~~~Ir~~ 200 (428)
..|.+++||||||||||++++++++++ .+.++.+++..+.+. . .|.....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 467899999999999999999999998 456788887665432 1 23455667777
Q ss_pred HHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 014243 201 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (428)
Q Consensus 201 F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~ 280 (428)
|.... -....++||||||+|.+. . + . .|+++++ |......++.||+++|..+.
T Consensus 123 f~~~~--~~~~~~~ii~lDE~d~l~---~---q-----~----~L~~l~~----------~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 123 ITNVP--KAKKRKTLILIQNPENLL---S---E-----K----ILQYFEK----------WISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHSC--GGGSCEEEEEEECCSSSC---C---T-----H----HHHHHHH----------HHHCSSCCEEEEEECCSSCC
T ss_pred HHHhh--hccCCceEEEEecHHHhh---c---c-----h----HHHHHHh----------cccccCCcEEEEEEecCccc
Confidence 76520 025678999999999987 1 1 2 2333322 11134578899999999875
Q ss_pred CChh----hcCCCCce--EEEe-CCCHHHHHHHHHHhcc
Q 014243 281 LYAP----LIRDGRME--KFYW-APTREDRIGVCKGIFR 312 (428)
Q Consensus 281 Ld~A----LlR~gRfd--~~i~-~P~~eeR~~Il~~~~~ 312 (428)
.+.. +.+ ||. ++.+ .++.++..+|++..+.
T Consensus 176 ~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 4433 333 564 3333 8899999999876654
No 55
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=5.3e-14 Score=148.22 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=93.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChH-------HHHHHHHHHHHHH-HHhCCceEEEec
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA-------KLIRQRYREAADI-IKKGKMCCLMIN 219 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~-------~~Ir~~F~~A~~~-i~~~~p~ILfID 219 (428)
+++++||+||||||||++|+++|++++.+++.++++++.+.+..+.. ..++..|..+.+. .....++|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 57899999999999999999999999999999999876543211000 0011122221000 013678999999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-CCChhhcCCCCceEEEe-C
Q 014243 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDGRMEKFYW-A 297 (428)
Q Consensus 220 EiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-~Ld~ALlR~gRfd~~i~-~ 297 (428)
|+|.+..... . . ...|.++++ ..+++||++||+.. ..-+++.| |+..+.. .
T Consensus 156 Eid~l~~~~~-----~----~-l~~L~~~l~---------------~~~~~iIli~~~~~~~~l~~l~~--r~~~i~f~~ 208 (516)
T 1sxj_A 156 EVDGMSGGDR-----G----G-VGQLAQFCR---------------KTSTPLILICNERNLPKMRPFDR--VCLDIQFRR 208 (516)
T ss_dssp SGGGCCTTST-----T----H-HHHHHHHHH---------------HCSSCEEEEESCTTSSTTGGGTT--TSEEEECCC
T ss_pred CCCccchhhH-----H----H-HHHHHHHHH---------------hcCCCEEEEEcCCCCccchhhHh--ceEEEEeCC
Confidence 9999865421 0 1 123334443 13456777777654 22234554 4443333 9
Q ss_pred CCHHHHHHHHHHhccCC--CCCHhHHHHHhcC
Q 014243 298 PTREDRIGVCKGIFRND--NVADDDIVKLVDT 327 (428)
Q Consensus 298 P~~eeR~~Il~~~~~~~--~l~~~~la~lt~g 327 (428)
|+.+++.+++..++... .++.+.+..++..
T Consensus 209 ~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~ 240 (516)
T 1sxj_A 209 PDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 240 (516)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999988776543 4555555544443
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.48 E-value=3.5e-13 Score=123.32 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=92.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc----------------cccccCCC--CChHHHHHHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA----------------GELESGNA--GEPAKLIRQRYREAADIIK 209 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~----------------s~L~s~~~--Ge~~~~Ir~~F~~A~~~i~ 209 (428)
.|..++|+||||||||+++++++++++........ .++..... ......++.++........
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 123 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchh
Confidence 45689999999999999999999987543211000 00000000 1122334444443200001
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCC
Q 014243 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 289 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~g 289 (428)
...+.+|||||+|.+... ....|+.+++ ....++.+|+|||++..+++++++
T Consensus 124 ~~~~~vlviDe~~~l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~t~~~~~~~~~l~~-- 175 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHVKFLLATTDPQKLPVTILS-- 175 (250)
T ss_dssp SSSSEEEEEETGGGSCHH-------------HHHHHHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT--
T ss_pred cCCceEEEEECcccccHH-------------HHHHHHHHHh-------------cCCCceEEEEEeCChHhCCHHHHH--
Confidence 346899999999875211 1223444444 223567899999999999999987
Q ss_pred CceEEEe-CCCHHHHHHHHHHhccCC--CCCHhH---HHHHhcC
Q 014243 290 RMEKFYW-APTREDRIGVCKGIFRND--NVADDD---IVKLVDT 327 (428)
Q Consensus 290 Rfd~~i~-~P~~eeR~~Il~~~~~~~--~l~~~~---la~lt~g 327 (428)
|+..+.. .|+.++..++++.++... .++.+. +++.+.|
T Consensus 176 r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 219 (250)
T 1njg_A 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 219 (250)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT
T ss_pred HhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 5544333 889999999998887644 344433 4444444
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.47 E-value=4.7e-13 Score=146.89 Aligned_cols=139 Identities=12% Similarity=0.172 Sum_probs=98.1
Q ss_pred CCc-EEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014243 148 VPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 148 ~p~-glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|. .+||+||||||||++|+++|+.+ +.+++.++++++.+.+..... .+++.. +...++||||||||+
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~----~l~~~~----~~~~~~vl~lDEi~~ 590 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG----QLTEKV----RRKPYSVVLLDAIEK 590 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHH----HHCSSSEEEEECGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc----hhhHHH----HhCCCeEEEEeCccc
Confidence 344 69999999999999999999997 678999999999887766521 122222 456778999999987
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC------------CChhhcCCCCc
Q 014243 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST------------LYAPLIRDGRM 291 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~------------Ld~ALlR~gRf 291 (428)
+. ..+...|++++++-......| ......++.||+|||.+.. +.|+|+. ||
T Consensus 591 ~~-------------~~~~~~Ll~~le~g~~~~~~g--~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl 653 (758)
T 3pxi_A 591 AH-------------PDVFNILLQVLEDGRLTDSKG--RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RI 653 (758)
T ss_dssp SC-------------HHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TS
T ss_pred cC-------------HHHHHHHHHHhccCeEEcCCC--CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hC
Confidence 52 234456777777322111111 1234467899999997665 7888885 99
Q ss_pred eEEEe--CCCHHHHHHHHHHhc
Q 014243 292 EKFYW--APTREDRIGVCKGIF 311 (428)
Q Consensus 292 d~~i~--~P~~eeR~~Il~~~~ 311 (428)
|..+. .|+.+++.+|++.++
T Consensus 654 ~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 654 DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SEEEECC--CHHHHHHHHHHHH
T ss_pred CeEEecCCCCHHHHHHHHHHHH
Confidence 87777 889999999987765
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.47 E-value=1.3e-13 Score=151.07 Aligned_cols=142 Identities=17% Similarity=0.211 Sum_probs=99.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccC-----CCCChHHHH-----HHHHHHHHHHHHhCCceEEEec
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-----NAGEPAKLI-----RQRYREAADIIKKGKMCCLMIN 219 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~-----~~Ge~~~~I-----r~~F~~A~~~i~~~~p~ILfID 219 (428)
..+||+||||||||++|+++|+.++.+++.++++++..+ .+|.+...+ ..+.+. ++...++|||||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~----~~~~~~~vl~lD 564 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA----VIKHPHAVLLLD 564 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHH----HHHCSSEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHH----HHhCCCcEEEEe
Confidence 469999999999999999999999999999998887543 333321111 112222 255668999999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--------------------
Q 014243 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------------- 279 (428)
Q Consensus 220 EiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------------------- 279 (428)
|||++. ..+...|++++++.....-.| ......++.||+|||...
T Consensus 565 Ei~~~~-------------~~~~~~Ll~~le~~~~~~~~g--~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~ 629 (758)
T 1r6b_X 565 EIEKAH-------------PDVFNILLQVMDNGTLTDNNG--RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 629 (758)
T ss_dssp TGGGSC-------------HHHHHHHHHHHHHSEEEETTT--EEEECTTEEEEEEECSSCC-----------------CH
T ss_pred CccccC-------------HHHHHHHHHHhcCcEEEcCCC--CEEecCCeEEEEecCcchhhhhhcccCccccchHHHHH
Confidence 999752 224556677777332111011 112236788999999854
Q ss_pred -----CCChhhcCCCCceEEEe--CCCHHHHHHHHHHhcc
Q 014243 280 -----TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 312 (428)
Q Consensus 280 -----~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~ 312 (428)
.++|+|+. |||.++. .|+.+++..|++.++.
T Consensus 630 ~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 630 EEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp HHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 67888886 9987777 8899999999887764
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=5.4e-13 Score=132.96 Aligned_cols=152 Identities=14% Similarity=0.224 Sum_probs=99.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh-----------CCCeEEecccccc-c-----------------CCCCCh-HHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM-----------GINPIMMSAGELE-S-----------------GNAGEP-AKL 196 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el-----------g~~~i~vs~s~L~-s-----------------~~~Ge~-~~~ 196 (428)
..|..++|+||||||||++|+++++++ +..++.+++.... + ...|.+ ...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 456799999999999999999999997 8899998865432 1 011221 122
Q ss_pred HHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 014243 197 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (428)
Q Consensus 197 Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN 276 (428)
+..++... ....+ ||||||+|.+..... + .. ++..+++ . . .++.+|+|||
T Consensus 123 ~~~l~~~l----~~~~~-vlilDEi~~l~~~~~---~-----~~---~l~~l~~---------~----~-~~~~iI~~t~ 172 (384)
T 2qby_B 123 IDKIKNGT----RNIRA-IIYLDEVDTLVKRRG---G-----DI---VLYQLLR---------S----D-ANISVIMISN 172 (384)
T ss_dssp HHHHHHHH----SSSCE-EEEEETTHHHHHSTT---S-----HH---HHHHHHT---------S----S-SCEEEEEECS
T ss_pred HHHHHHHh----ccCCC-EEEEECHHHhccCCC---C-----ce---eHHHHhc---------C----C-cceEEEEEEC
Confidence 32333222 34444 999999998865421 1 11 1223333 1 1 6789999999
Q ss_pred CC---CCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccC----CCCCHhH---HHHHhcCCCh
Q 014243 277 DF---STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADDD---IVKLVDTFPG 330 (428)
Q Consensus 277 ~~---~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~----~~l~~~~---la~lt~gfsg 330 (428)
.+ +.+++++++ ||...+. .|+.+++.+|++.++.. ..++.+. +++.+.+.+|
T Consensus 173 ~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G 236 (384)
T 2qby_B 173 DINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG 236 (384)
T ss_dssp STTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC
T ss_pred CCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC
Confidence 98 788999887 5544444 88999999999887542 3444433 6666664444
No 60
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.45 E-value=8.5e-13 Score=127.82 Aligned_cols=144 Identities=18% Similarity=0.211 Sum_probs=96.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-----CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH--hCCceEEEecccccc
Q 014243 152 LGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMINDLDAG 224 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~--~~~p~ILfIDEiDa~ 224 (428)
+|||||||||||++|+++++++ +.+++.+++++... ... ++..+........ ...+.||||||+|.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--IDV----VRHKIKEFARTAPIGGAPFKIIFLDEADAL 114 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TTT----SSHHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--hHH----HHHHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence 9999999999999999999996 34577777765432 111 1222222210001 256899999999986
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHH
Q 014243 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDR 303 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR 303 (428)
... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.. .|+.+++
T Consensus 115 ~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~i~~~~~~~~~~ 166 (319)
T 2chq_A 115 TAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEAM 166 (319)
T ss_dssp CHH-------------HHHTTGGGTS-------------SSSSSEEEEEEESCGGGSCHHHHT--TCEEEECCCCCHHHH
T ss_pred CHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcchHHHh--hCeEEEecCCCHHHH
Confidence 321 1223444444 234567899999999999999987 6665444 8899999
Q ss_pred HHHHHHhccCCC--CCHhHHHHHhcCCC
Q 014243 304 IGVCKGIFRNDN--VADDDIVKLVDTFP 329 (428)
Q Consensus 304 ~~Il~~~~~~~~--l~~~~la~lt~gfs 329 (428)
.+++..++...+ ++.+.+..+.....
T Consensus 167 ~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 194 (319)
T 2chq_A 167 KKRLLEICEKEGVKITEDGLEALIYISG 194 (319)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 999998887654 45666666654433
No 61
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=6e-13 Score=129.09 Aligned_cols=153 Identities=15% Similarity=0.182 Sum_probs=100.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH---hCCceEEEec
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK---KGKMCCLMIN 219 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~---~~~p~ILfID 219 (428)
.|. +|||||||||||++|+++++++ +..++.+++++.. ....++..+........ .+.++|||||
T Consensus 42 ~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiD 114 (323)
T 1sxj_B 42 MPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILD 114 (323)
T ss_dssp CCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEE
T ss_pred CCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEE
Confidence 344 9999999999999999999996 3456777665421 13445555544410000 3358999999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CC
Q 014243 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-AP 298 (428)
Q Consensus 220 EiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P 298 (428)
|+|.+... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.. .|
T Consensus 115 e~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~~ 166 (323)
T 1sxj_B 115 EADSMTAG-------------AQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQS--QCAILRYSKL 166 (323)
T ss_dssp SGGGSCHH-------------HHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCC
T ss_pred CcccCCHH-------------HHHHHHHHHh-------------ccCCCceEEEEeCChhhchhHHHh--hceEEeecCC
Confidence 99876431 1122334444 223567899999999999999987 5654444 88
Q ss_pred CHHHHHHHHHHhccCC--CCCHhH---HHHHhcCCChhhHHh
Q 014243 299 TREDRIGVCKGIFRND--NVADDD---IVKLVDTFPGQSIDF 335 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~--~l~~~~---la~lt~gfsgadL~~ 335 (428)
+.+++.++++.++... .++.+. +++.+.|-....+..
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~ 208 (323)
T 1sxj_B 167 SDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINN 208 (323)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999998877543 344444 555665555444443
No 62
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=1.8e-12 Score=128.45 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=97.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCeEEecccccccC----------------CCCChH-HHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPA-KLIRQR 200 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---------g~~~i~vs~s~L~s~----------------~~Ge~~-~~Ir~~ 200 (428)
..+..++|+||||||||++++++++++ +..++.+++....+. ..|.+. ..+..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 457799999999999999999999998 888888887653221 122222 222223
Q ss_pred HHHHHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC-CCCceEEEEeCCC
Q 014243 201 YREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF 278 (428)
Q Consensus 201 F~~A~~~i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~-~~~V~VI~TTN~~ 278 (428)
+.. +. ...|+||||||+|.+...+. ....+. .+++..+ . .. ..++.+|+|||++
T Consensus 122 ~~~----l~~~~~~~vlilDEi~~l~~~~~-------~~~~l~-~l~~~~~--------~----~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 122 VKR----LSRLRGIYIIVLDEIDFLPKRPG-------GQDLLY-RITRINQ--------E----LGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHH----HTTSCSEEEEEEETTTHHHHSTT-------HHHHHH-HHHHGGG--------C----C-----CEEEEECSCS
T ss_pred HHH----HhccCCeEEEEEccHhhhcccCC-------CChHHH-hHhhchh--------h----cCCCceEEEEEEECCC
Confidence 222 23 45699999999998754420 112222 1222222 0 11 4678999999998
Q ss_pred ---CCCChhhcCCCCceE-EEe--CCCHHHHHHHHHHhccC----CCCCHh---HHHHHhc
Q 014243 279 ---STLYAPLIRDGRMEK-FYW--APTREDRIGVCKGIFRN----DNVADD---DIVKLVD 326 (428)
Q Consensus 279 ---~~Ld~ALlR~gRfd~-~i~--~P~~eeR~~Il~~~~~~----~~l~~~---~la~lt~ 326 (428)
+.+++++.+ ||.. .+. .|+.+++.+|++..+.. ..++.+ .+++.+.
T Consensus 178 ~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 178 GFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp TTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred chHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 788999987 6643 333 88999999998877542 334433 3566666
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=1.4e-12 Score=128.42 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=96.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC------CCeEEecccccccCCCCChHHHHHHHHHHHHH------------HHHhCC
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAAD------------IIKKGK 212 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg------~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~------------~i~~~~ 212 (428)
.+|||||||||||++|+++|++++ ..++.+++++.. ....+++.+..... ......
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPP 133 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCC
Confidence 399999999999999999999864 356777766432 12233333322211 001235
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCce
Q 014243 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (428)
Q Consensus 213 p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd 292 (428)
+.||||||+|.+... ....|+.+++ ....++.+|++||.+..+++++++ |+.
T Consensus 134 ~~vliiDE~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--R~~ 185 (353)
T 1sxj_D 134 YKIIILDEADSMTAD-------------AQSALRRTME-------------TYSGVTRFCLICNYVTRIIDPLAS--QCS 185 (353)
T ss_dssp CEEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--HSE
T ss_pred ceEEEEECCCccCHH-------------HHHHHHHHHH-------------hcCCCceEEEEeCchhhCcchhhc--cCc
Confidence 679999999876432 1233445555 222456788899999999999987 776
Q ss_pred EEEe-CCCHHHHHHHHHHhccCCC--CCHhH---HHHHhcCCChh
Q 014243 293 KFYW-APTREDRIGVCKGIFRNDN--VADDD---IVKLVDTFPGQ 331 (428)
Q Consensus 293 ~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~---la~lt~gfsga 331 (428)
.+.. .|+.++...+++.++...+ ++.+. +++.+.|....
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~ 230 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRR 230 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHH
Confidence 5544 8899999999988876554 55544 45555544333
No 64
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.40 E-value=1.9e-12 Score=119.80 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=98.7
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---CCeEEecccccccCCCCChHHHHHHHHHHHHHHHH
Q 014243 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 209 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~ 209 (428)
+....+.+...+ .+..++|+||||||||++|+++++++. ..++.++.+++...... .+. .
T Consensus 39 ~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------~ 101 (242)
T 3bos_A 39 LIGALKSAASGD---GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLE------G 101 (242)
T ss_dssp HHHHHHHHHHTC---SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGT------T
T ss_pred HHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHH------h
Confidence 334445555432 467999999999999999999999864 67888888776644311 111 1
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC----CCChhh
Q 014243 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPL 285 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~----~Ld~AL 285 (428)
...+++|||||+|.+..... ....|+.+++ .. .....+.+|+|||... .+++++
T Consensus 102 ~~~~~vliiDe~~~~~~~~~-----------~~~~l~~~l~--------~~---~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPL-----------WEEAIFDLYN--------RV---AEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHH-----------HHHHHHHHHH--------HH---HHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ccCCCEEEEeccccccCCHH-----------HHHHHHHHHH--------HH---HHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 24578999999998754310 1122333333 01 0112233777776443 466888
Q ss_pred cCCCCce--EEEe--CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCCCh
Q 014243 286 IRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (428)
Q Consensus 286 lR~gRfd--~~i~--~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfsg 330 (428)
.+ ||. ..+. .|+.+++.++++.++... .++.+.+..+...+.|
T Consensus 160 ~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 160 VS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp HH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred hh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 87 663 5555 899999999999887643 4566655555554433
No 65
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.38 E-value=3.1e-13 Score=133.20 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=82.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEE----ecccc---------------------cccCCCCChHHHH------H
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAGE---------------------LESGNAGEPAKLI------R 198 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~----vs~s~---------------------L~s~~~Ge~~~~I------r 198 (428)
.++|||||||||||++|+++++.++..... +++.. +.....|.+...+ .
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 359999999999999999999998631110 01100 0000112221111 1
Q ss_pred HHHHHHH-----HHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEE
Q 014243 199 QRYREAA-----DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPII 272 (428)
Q Consensus 199 ~~F~~A~-----~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI 272 (428)
..|..+. ..+....++||||||+|.+... ....|+.+++... .+...+.. .....++.+|
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~~li 191 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLS-IRHPARFVLV 191 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCC-EEEECCEEEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceE-EeeCCceEEE
Confidence 1222110 1112234789999999976432 1234445554211 11111110 1112478899
Q ss_pred EEeCCCC-CCChhhcCCCCceEEEe--CC-CHHHHHHHHHHhc
Q 014243 273 VTGNDFS-TLYAPLIRDGRMEKFYW--AP-TREDRIGVCKGIF 311 (428)
Q Consensus 273 ~TTN~~~-~Ld~ALlR~gRfd~~i~--~P-~~eeR~~Il~~~~ 311 (428)
+|||..+ .++++|++ ||+..+. .| +.+++.+|++.++
T Consensus 192 ~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 192 GSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp EEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 9999754 89999998 8887666 55 6888889987653
No 66
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=3.9e-12 Score=123.57 Aligned_cols=143 Identities=19% Similarity=0.226 Sum_probs=93.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC-----CCeEEecccccccCCCCChHHHHHHHHHHHHHH--HHhCCceEEEeccccc
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA 223 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg-----~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~--i~~~~p~ILfIDEiDa 223 (428)
.+|||||||||||++|+++++++. ..++.+++++.. ....++......... .....+.||||||+|.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH------HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC------chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 499999999999999999999963 236666655322 111222222222100 0125689999999987
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHH
Q 014243 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 302 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~ee 302 (428)
+... ....|+.+++ ....++.+|+|||.+..+++++.+ |+..+.. .|+.++
T Consensus 122 l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~l~~~~ 173 (327)
T 1iqp_A 122 LTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED 173 (327)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--TEEEEECCCCCHHH
T ss_pred CCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCCccccCHHHHh--hCcEEEecCCCHHH
Confidence 6321 1233444444 223567899999999999999987 6765444 889999
Q ss_pred HHHHHHHhccCCC--CCHhH---HHHHhcC
Q 014243 303 RIGVCKGIFRNDN--VADDD---IVKLVDT 327 (428)
Q Consensus 303 R~~Il~~~~~~~~--l~~~~---la~lt~g 327 (428)
..++++.++...+ ++.+. +++.+.|
T Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 174 IAKRLRYIAENEGLELTEEGLQAILYIAEG 203 (327)
T ss_dssp HHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHCCC
Confidence 9999988876655 44444 4444444
No 67
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.35 E-value=7.8e-12 Score=124.35 Aligned_cols=154 Identities=13% Similarity=0.125 Sum_probs=102.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccCCCCChHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~~~Ir~~F~ 202 (428)
+.|..+|||||||||||++|+++|+.+... ++.+.+.+ .-...+...+|++.+
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHHH
Confidence 568899999999999999999999997643 22222210 001123445677666
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014243 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
.+...-..+...|++|||+|.+... . ...|+..++ ++..++.+|++||.++.|+
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~~------------a-~naLLk~lE-------------ep~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTDA------------A-ANALLKTLE-------------EPPAETWFFLATREPERLL 152 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCHH------------H-HHHHHHHHT-------------SCCTTEEEEEEESCGGGSC
T ss_pred HHhhccccCCcEEEEECchhhcCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEeCChHhCc
Confidence 6511111346789999999986321 1 123445555 3456788999999999999
Q ss_pred hhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHhH---HHHHhcCCChhhHH
Q 014243 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDD---IVKLVDTFPGQSID 334 (428)
Q Consensus 283 ~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~~---la~lt~gfsgadL~ 334 (428)
+++++ |+..+.. .|+.++..+++.... .++.+. +++++.|-.+..+.
T Consensus 153 ~ti~S--Rc~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 153 ATLRS--RCRLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHhh--cceeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 99987 6665555 899999999988776 445443 55666665554443
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.33 E-value=1.2e-11 Score=137.75 Aligned_cols=143 Identities=15% Similarity=0.182 Sum_probs=95.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC-----CCCChHHHHH----HHHHHHHHHHHhCCceEEE
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLIR----QRYREAADIIKKGKMCCLM 217 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~-----~~Ge~~~~Ir----~~F~~A~~~i~~~~p~ILf 217 (428)
..+||+||||||||++|+++++.+ +.+++.++++++... ..|.+...+. ..|..+ ++...++|||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~---~~~~~~~vl~ 665 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA---VRRRPYSVIL 665 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHH---HHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHH---HHhCCCeEEE
Confidence 589999999999999999999998 788999998877543 2222111110 112222 2455679999
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC--------------------
Q 014243 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-------------------- 277 (428)
Q Consensus 218 IDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-------------------- 277 (428)
|||+|.+. ..+...|+.++++.... ++........+++||+|||.
T Consensus 666 lDEi~~l~-------------~~~~~~Ll~~l~~~~~~--~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~ 730 (854)
T 1qvr_A 666 FDEIEKAH-------------PDVFNILLQILDDGRLT--DSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRD 730 (854)
T ss_dssp ESSGGGSC-------------HHHHHHHHHHHTTTEEC--CSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHH
T ss_pred EecccccC-------------HHHHHHHHHHhccCceE--CCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHH
Confidence 99998652 23456677888854322 11111223467789999997
Q ss_pred ------CCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhcc
Q 014243 278 ------FSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 312 (428)
Q Consensus 278 ------~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~ 312 (428)
...+.|+|+. |||..+. +|+.+++..|++.++.
T Consensus 731 ~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 731 EVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp HHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 2356777875 8977766 8899999999877664
No 69
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.33 E-value=1.4e-11 Score=122.30 Aligned_cols=150 Identities=13% Similarity=0.161 Sum_probs=95.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccCCCCChHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~~~Ir~~F~ 202 (428)
+.|..+||+||||||||++|+++|+.++.. ++.+.++. . .....++.++.
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~l~~ 109 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRDLLD 109 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC----S--CCSSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc----c--CCHHHHHHHHH
Confidence 346789999999999999999999997652 22222211 0 11123445555
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014243 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
.+......+.+.||||||+|.+... ....|+.+++ ....++.+|++||++..++
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCHH-------------HHHHHHHHHH-------------SCCSSEEEEEEESCGGGSC
T ss_pred HHhhccccCCeEEEEEECcchhcHH-------------HHHHHHHHHh-------------cCCCceEEEEEeCChHhCc
Confidence 4410001345789999999876321 1223444444 2345678999999999999
Q ss_pred hhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhH---HHHHhcCCCh
Q 014243 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDD---IVKLVDTFPG 330 (428)
Q Consensus 283 ~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~---la~lt~gfsg 330 (428)
+++++ |+..+-. .|+.++..++++.++...+ ++.+. +++.+.|...
T Consensus 164 ~~l~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r 215 (373)
T 1jr3_A 164 VTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 (373)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHH
T ss_pred HHHHh--heeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHH
Confidence 99987 5644444 8899999999988876543 34433 4555555333
No 70
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.30 E-value=1.5e-11 Score=122.34 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=97.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~ 227 (428)
++..++|+||||||||+|+++||++++.++...+++.+.. ...+...+. ....++|+||||++.+...
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~------~~~~~~v~~iDE~~~l~~~ 117 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILT------SLERGDVLFIDEIHRLNKA 117 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHH------HCCTTCEEEEETGGGCCHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHH------HccCCCEEEEcchhhcCHH
Confidence 4567999999999999999999999999888777664431 222322222 1235789999999876421
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCc-cccC-CCcc---ccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014243 228 MGGTTQYTVNNQMVNATLMNIADNPT-CVQL-PGMY---NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 228 r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l-~~~~---~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
+...|+..+.+.. .+.+ .+.. .......+.+|.+||++..|++++++ ||...+. .|+.
T Consensus 118 -------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~ 182 (334)
T 1in4_A 118 -------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTV 182 (334)
T ss_dssp -------------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCH
T ss_pred -------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCH
Confidence 1122333222110 0000 0000 00123467788899999999999997 7765555 9999
Q ss_pred HHHHHHHHHhccCC--CCCHhHHHHHhcCCCh
Q 014243 301 EDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (428)
Q Consensus 301 eeR~~Il~~~~~~~--~l~~~~la~lt~gfsg 330 (428)
+++.+|++...... .++.+.+..++....|
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G 214 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRG 214 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC
Confidence 99999998776543 4455555444444333
No 71
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.30 E-value=2.9e-12 Score=126.23 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=86.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccc-cc-cCCCCChHHHHHHHHHHHHHHH-HhCC---ceEEEeccccc
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LE-SGNAGEPAKLIRQRYREAADII-KKGK---MCCLMINDLDA 223 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~-L~-s~~~Ge~~~~Ir~~F~~A~~~i-~~~~---p~ILfIDEiDa 223 (428)
.++|||||||||||++|+++|+.++.+++.+++.. +. +...|.. .+....... .... .+||||||+|.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~------~~~~~~~~~~~~~g~l~~~vl~iDEi~~ 120 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTM------IYNQHKGNFEVKKGPVFSNFILADEVNR 120 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEE------EEETTTTEEEEEECTTCSSEEEEETGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCce------eecCCCCceEeccCcccccEEEEEcccc
Confidence 47999999999999999999999999988877531 10 0000000 000000000 0111 37999999987
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCCceEEEe--
Q 014243 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW-- 296 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gRfd~~i~-- 296 (428)
+... ....|++.++... +.+.+.. .....++.||+|+|..+ .++++|++ ||+..+.
T Consensus 121 ~~~~-------------~~~~Ll~~l~~~~-~~~~g~~-~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~ 183 (331)
T 2r44_A 121 SPAK-------------VQSALLECMQEKQ-VTIGDTT-YPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLT 183 (331)
T ss_dssp SCHH-------------HHHHHHHHHHHSE-EEETTEE-EECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECC
T ss_pred CCHH-------------HHHHHHHHHhcCc-eeeCCEE-EECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcC
Confidence 5321 2234444544221 1112211 11234677888888443 38999998 8886565
Q ss_pred CCCHHHHHHHHHHhccC
Q 014243 297 APTREDRIGVCKGIFRN 313 (428)
Q Consensus 297 ~P~~eeR~~Il~~~~~~ 313 (428)
.|+.+++.+|++.+...
T Consensus 184 ~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 184 YLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCCHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHhcccc
Confidence 99999999999988754
No 72
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=2.5e-11 Score=119.92 Aligned_cols=163 Identities=15% Similarity=0.233 Sum_probs=99.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh------CCCeEEecccccccC----------------CCCChHHHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESG----------------NAGEPAKLIRQRYREA 204 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el------g~~~i~vs~s~L~s~----------------~~Ge~~~~Ir~~F~~A 204 (428)
..+..++|+||||||||++++++++++ +..++.+++....+. ..|.+.. ..+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIA---ELYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHH---HHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HHHHHH
Confidence 456789999999999999999999998 888888886532110 1122222 222222
Q ss_pred HHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC---CC
Q 014243 205 ADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---ST 280 (428)
Q Consensus 205 ~~~i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~---~~ 280 (428)
...+. ...|+||||||++.+..... . ..+. .|+.+++ . ....++.+|++||++ ..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~---~-----~~l~-~l~~~~~--------~----~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYN---D-----DILY-KLSRINS--------E----VNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSC---S-----THHH-HHHHHHH--------S----CCC--EEEEEEESCGGGGGG
T ss_pred HHHHhccCCeEEEEEcChhhhhccCc---C-----HHHH-HHhhchh--------h----cCCCeEEEEEEECCCChHhh
Confidence 22224 34599999999998865431 1 1111 2333333 1 123578899999988 46
Q ss_pred CChhhcCCCCceEEEe--CCCHHHHHHHHHHhcc----CCCCCHhH---HHHHhc---CCChhhHH
Q 014243 281 LYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR----NDNVADDD---IVKLVD---TFPGQSID 334 (428)
Q Consensus 281 Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~----~~~l~~~~---la~lt~---gfsgadL~ 334 (428)
+++.+.++.... .+. .|+.++..+|++..+. ...++.+. +++.+. |.....++
T Consensus 179 ~~~~~~~r~~~~-~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 179 LDPRVKSSLSEE-EIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp CTTHHHHTTTTE-EEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCHHHhccCCCe-eEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 888888743212 334 8899999999887653 23455443 555555 55444444
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=4.7e-11 Score=118.06 Aligned_cols=149 Identities=17% Similarity=0.343 Sum_probs=89.0
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC-----------------------------CeEEeccc
Q 014243 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------------NPIMMSAG 183 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~-----------------------------~~i~vs~s 183 (428)
+....++++... .+.|. ++|+||||||||++++++|+++.. .++.+..+
T Consensus 22 ~~~~l~~~~~~~-~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (354)
T 1sxj_E 22 LTNFLKSLSDQP-RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS 99 (354)
T ss_dssp HHHHHHTTTTCT-TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC
T ss_pred HHHHHHHHHhhC-CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh
Confidence 344445554122 23455 999999999999999999997421 11222221
Q ss_pred ccccCCCCC-hHHHHHHHHHHHHHHHH----------hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCC
Q 014243 184 ELESGNAGE-PAKLIRQRYREAADIIK----------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 252 (428)
Q Consensus 184 ~L~s~~~Ge-~~~~Ir~~F~~A~~~i~----------~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~ 252 (428)
. .+. ....+++....+..... ...|.||+|||++.+... ....|+++++
T Consensus 100 ~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~-------------~~~~L~~~le-- 159 (354)
T 1sxj_E 100 D-----MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD-------------AQAALRRTME-- 159 (354)
T ss_dssp ---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH-------------HHHHHHHHHH--
T ss_pred h-----cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH-------------HHHHHHHHHH--
Confidence 1 111 11134444443311000 236789999999874211 1223444444
Q ss_pred ccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCC
Q 014243 253 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV 316 (428)
Q Consensus 253 ~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l 316 (428)
+...++.+|++||+++.+++++.+ |+..+-. .|+.+++.++++.++...++
T Consensus 160 -----------~~~~~~~~Il~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 160 -----------KYSKNIRLIMVCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp -----------HSTTTEEEEEEESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred -----------hhcCCCEEEEEeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 223457899999999999999987 6644444 89999999999888765443
No 74
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=1.1e-11 Score=111.54 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=66.3
Q ss_pred ccccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEeccccc
Q 014243 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGEL 185 (428)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~s~L 185 (428)
++..+|++.... .-..+.+...+++|.....+..+.+++|+||||||||+|++++++.+ |..++.++..++
T Consensus 4 ~~~~~f~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 4 YWNANLDTYHPK-----NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp CTTCCSSSCCCC-----SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhhCccccccCC-----CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 344556664432 11235567778888877766667899999999999999999999986 666667766655
Q ss_pred ccCCCCChHHHHHHHHHHHH--HHH-HhCCceEEEecccccc
Q 014243 186 ESGNAGEPAKLIRQRYREAA--DII-KKGKMCCLMINDLDAG 224 (428)
Q Consensus 186 ~s~~~Ge~~~~Ir~~F~~A~--~~i-~~~~p~ILfIDEiDa~ 224 (428)
... +...+.... ..+ ....|.+|+|||++..
T Consensus 79 ~~~--------~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 IFR--------LKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHH--------HHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HHH--------HHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 421 111111100 011 2346889999999754
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.29 E-value=9.2e-13 Score=125.85 Aligned_cols=133 Identities=16% Similarity=0.174 Sum_probs=81.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC---CCeEEecccccccCCCCChHHHHHHHHH-------HHH----HHHHhCCce
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYR-------EAA----DIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~-------~A~----~~i~~~~p~ 214 (428)
+..+||+||||||||++|+++++.+. .+++.++++.+... .....+|. .+. ..+.....+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~------~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~ 102 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERADGG 102 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH------HHHHHHHCCC---------CCCCHHHHTTTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh------HHHHHhcCCcccccccccccccchhhhcCCc
Confidence 46799999999999999999999875 67999988866311 01111221 110 112233568
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhcC
Q 014243 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALlR 287 (428)
+|||||+|.+... ....|+.++++.......+. .....++.+|+|||.. ..++++|++
T Consensus 103 ~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~ 167 (265)
T 2bjv_A 103 TLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167 (265)
T ss_dssp EEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC----CEECCCEEEEEESSCHHHHHHHTSSCHHHHH
T ss_pred EEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCc--ccccCCeEEEEecCcCHHHHHHcCCccHHHHH
Confidence 9999999976431 22345555553221111111 1123567899999985 357888886
Q ss_pred CCCceE-EEeCCCHHHHH
Q 014243 288 DGRMEK-FYWAPTREDRI 304 (428)
Q Consensus 288 ~gRfd~-~i~~P~~eeR~ 304 (428)
||.. .+.+|+..+|.
T Consensus 168 --Rl~~~~i~lp~L~~R~ 183 (265)
T 2bjv_A 168 --ALAFDVVQLPPLRERE 183 (265)
T ss_dssp --HHCSEEEECCCGGGCH
T ss_pred --hhcCcEEeCCChhhhh
Confidence 7864 45577776653
No 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=4.8e-11 Score=118.62 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=94.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh----CCCeEEecccccccC----------------CCCChHHHHHHHHHHHHHHHH-
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG----------------NAGEPAKLIRQRYREAADIIK- 209 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~s~L~s~----------------~~Ge~~~~Ir~~F~~A~~~i~- 209 (428)
.++|+||||||||++++++++++ +..++.+++....+. ..|.+... ++......+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~l~~~l~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDE---FLALLVEHLRE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHH---HHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHH---HHHHHHHHHhh
Confidence 89999999999999999999998 677888876543210 01211111 2222222223
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC---CCCChhhc
Q 014243 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLI 286 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~---~~Ld~ALl 286 (428)
...|.||||||+|.+ . ......|..+++ .. ......++.+|++||++ +.+++++.
T Consensus 123 ~~~~~vlilDE~~~l----~---------~~~~~~L~~~~~--------~~-~~~~~~~~~iI~~~~~~~~~~~l~~~~~ 180 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL----A---------PDILSTFIRLGQ--------EA-DKLGAFRIALVIVGHNDAVLNNLDPSTR 180 (389)
T ss_dssp TTCCEEEEEETGGGS----C---------HHHHHHHHHHTT--------CH-HHHSSCCEEEEEEESSTHHHHTSCHHHH
T ss_pred cCCeEEEEEECcccc----c---------hHHHHHHHHHHH--------hC-CCCCcCCEEEEEEECCchHHHHhCHHhh
Confidence 456999999999987 1 122233444444 11 00012578999999998 78888887
Q ss_pred CCCCceE-EEe--CCCHHHHHHHHHHhccC----CCCCHhH---HHHHhc
Q 014243 287 RDGRMEK-FYW--APTREDRIGVCKGIFRN----DNVADDD---IVKLVD 326 (428)
Q Consensus 287 R~gRfd~-~i~--~P~~eeR~~Il~~~~~~----~~l~~~~---la~lt~ 326 (428)
+ ||.. .+. .++.++..++++..+.. ..++.+. +++.+.
T Consensus 181 ~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 181 G--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp H--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred h--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 7 5553 333 77889999998776643 3566554 556664
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.24 E-value=6.3e-12 Score=132.28 Aligned_cols=139 Identities=13% Similarity=0.108 Sum_probs=80.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC--CeEEecc-----cccccCCCCChHHHHHHHHHHHHHHHHhC---CceEEEec
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSA-----GELESGNAGEPAKLIRQRYREAADIIKKG---KMCCLMIN 219 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~-----s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~---~p~ILfID 219 (428)
..|||+||||||||++|+++|+.++. +|..+.. +++...+.+..... ...|..+ ..+ .++|||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~----~~g~l~~~~IL~ID 116 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERL----TSGYLPEAEIVFLD 116 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBC----CTTSGGGCSEEEEE
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhh----hccCCCcceeeeHH
Confidence 47999999999999999999999854 3333332 23332222221100 1222222 222 47799999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC---CChhhcCCCCceEEEe
Q 014243 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYW 296 (428)
Q Consensus 220 EiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~---Ld~ALlR~gRfd~~i~ 296 (428)
||+.+. ..+...|+.+++... +...|.. ...+..++|+|||.+.. +.+++++ ||...++
T Consensus 117 EI~r~~-------------~~~q~~LL~~lee~~-v~i~G~~--~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~ 178 (500)
T 3nbx_X 117 EIWKAG-------------PAILNTLLTAINERQ-FRNGAHV--EKIPMRLLVAASNELPEADSSLEALYD--RMLIRLW 178 (500)
T ss_dssp SGGGCC-------------HHHHHHHHHHHHSSE-EECSSSE--EECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEE
T ss_pred hHhhhc-------------HHHHHHHHHHHHHHh-ccCCCCc--CCcchhhhhhccccCCCccccHHHHHH--HHHHHHH
Confidence 997532 223345666665322 2222321 22233356889996433 4458987 8877777
Q ss_pred --CCCH-HHHHHHHHHhc
Q 014243 297 --APTR-EDRIGVCKGIF 311 (428)
Q Consensus 297 --~P~~-eeR~~Il~~~~ 311 (428)
.|+. +++.+|++.+.
T Consensus 179 v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 179 LDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCSCCCHHHHHHHHTCCC
T ss_pred HHHhhhhhhHHHHHhccc
Confidence 6665 77899988765
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=9.9e-11 Score=116.09 Aligned_cols=145 Identities=14% Similarity=0.232 Sum_probs=92.5
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC-----CeEEecccccccCCCCChHHHHHHHHHHHHHHH
Q 014243 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADII 208 (428)
Q Consensus 134 ~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~-----~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i 208 (428)
....+..+... +.|. +|||||||||||++++++|+.+.. .++.++.++.. | ...++.......+..
T Consensus 34 ~~~L~~~i~~g--~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~ 104 (340)
T 1sxj_C 34 ITTVRKFVDEG--KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR----G--IDVVRNQIKDFASTR 104 (340)
T ss_dssp HHHHHHHHHTT--CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBC
T ss_pred HHHHHHHHhcC--CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc----c--HHHHHHHHHHHHhhc
Confidence 33344444432 3444 999999999999999999999632 35556655321 2 234444443331100
Q ss_pred H--hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhc
Q 014243 209 K--KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (428)
Q Consensus 209 ~--~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALl 286 (428)
. ...+.|++|||+|.+... ....|+.+++ .....+.+|++||.+..+.++++
T Consensus 105 ~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 105 QIFSKGFKLIILDEADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp CSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHH
T ss_pred ccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEecCccccchhHH
Confidence 0 134789999999976321 1223444444 22345678899999999999998
Q ss_pred CCCCceEEEe-CCCHHHHHHHHHHhccCCC
Q 014243 287 RDGRMEKFYW-APTREDRIGVCKGIFRNDN 315 (428)
Q Consensus 287 R~gRfd~~i~-~P~~eeR~~Il~~~~~~~~ 315 (428)
+ |+..+.. .++.++..+++..++...+
T Consensus 159 s--R~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 159 S--QCTRFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp T--TSEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred h--hceeEeccCCCHHHHHHHHHHHHHHcC
Confidence 7 6765555 7788888888888775444
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.24 E-value=7.2e-12 Score=109.73 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=64.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
.+..|||+||||||||++|++|++.. +.+|+ ++++.+.+. ......|..+ ..++|||||||.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a-------~~g~l~ldei~~l 88 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA-------QGGTLVLSHPEHL 88 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH-------TTSCEEEECGGGS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc-------CCcEEEEcChHHC
Confidence 34569999999999999999999986 77888 888877644 1233445554 4579999999976
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 014243 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 278 (428)
... .+..|++++. ....++.+|+|||.+
T Consensus 89 ~~~-------------~q~~Ll~~l~-------------~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 89 TRE-------------QQYHLVQLQS-------------QEHRPFRLIGIGDTS 116 (145)
T ss_dssp CHH-------------HHHHHHHHHH-------------SSSCSSCEEEEESSC
T ss_pred CHH-------------HHHHHHHHHh-------------hcCCCEEEEEECCcC
Confidence 432 1233444443 223457899999974
No 80
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.22 E-value=2.6e-11 Score=147.47 Aligned_cols=144 Identities=13% Similarity=0.144 Sum_probs=92.3
Q ss_pred CCcEEEEEcCCCchHHHHHH-HHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH-----------hCCceE
Q 014243 148 VPLILGIWGGKGQGKSFQCE-LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMCC 215 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~-aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~-----------~~~p~I 215 (428)
..+++||+||||||||++|+ ++++..+..++.++.+...+ ...+...++...+..+ .++++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 34699999999999999995 55554567777777654431 2334344433200000 234589
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC-----CCCCceEEEEeCCCC-----CCChhh
Q 014243 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFS-----TLYAPL 285 (428)
Q Consensus 216 LfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~-----~~~~V~VI~TTN~~~-----~Ld~AL 285 (428)
||||||+.-...+.+ ++ ....+|.++++ ..|.|... ...++.+|+|||.+. .|+++|
T Consensus 1340 lFiDEinmp~~d~yg-~q------~~lelLRq~le------~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYG-SQ------NVVLFLRQLME------KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp EEEETTTCSCCCSSS-CC------HHHHHHHHHHH------TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred EEecccccccccccC-ch------hHHHHHHHHHh------cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Confidence 999999975554432 22 23344555555 22332211 125689999999994 899999
Q ss_pred cCCCCceEEEe-CCCHHHHHHHHHHhcc
Q 014243 286 IRDGRMEKFYW-APTREDRIGVCKGIFR 312 (428)
Q Consensus 286 lR~gRfd~~i~-~P~~eeR~~Il~~~~~ 312 (428)
+| ||..+.. .|+.+++..|+..++.
T Consensus 1407 lR--rf~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1407 TR--HAAILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp HT--TEEEEECCCCTTTHHHHHHHHHHH
T ss_pred hh--eeeEEEeCCCCHHHHHHHHHHHHH
Confidence 99 7744444 9999999999877663
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.20 E-value=8.3e-13 Score=141.73 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=86.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe----cccccccCCC-----CChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNA-----GEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v----s~s~L~s~~~-----Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
.+||+||||||||++|+++|+.++..++.. ++..+..... |+.. .-...+..| ..+|||||||
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~-~~~G~l~~A-------~~gil~IDEi 400 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYY-LEAGALVLA-------DGGIAVIDEI 400 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCS-EEECHHHHH-------SSSEECCTTT
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccccc-ccCCeeEec-------CCCcEEeehh
Confidence 799999999999999999999987654432 2222222111 1100 000112222 4579999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCcccc-CCCccccCCCCCceEEEEeCCCC-------------CCChhhcC
Q 014243 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQ-LPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 287 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~-l~~~~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR 287 (428)
|++... ....|++++++.+..- -.|. ......++.||+|||.+. .|++||++
T Consensus 401 d~l~~~-------------~q~~Ll~~le~~~i~i~~~g~-~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~ 466 (595)
T 3f9v_A 401 DKMRDE-------------DRVAIHEAMEQQTVSIAKAGI-VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS 466 (595)
T ss_dssp TCCCSH-------------HHHHHHHHHHSSSEEEESSSS-EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG
T ss_pred hhCCHh-------------HhhhhHHHHhCCEEEEecCCc-EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh
Confidence 986432 2345666666322110 0111 112246788999999987 89999998
Q ss_pred CCCceEEEe---CCCHHHHHHHHHHhccC
Q 014243 288 DGRMEKFYW---APTREDRIGVCKGIFRN 313 (428)
Q Consensus 288 ~gRfd~~i~---~P~~eeR~~Il~~~~~~ 313 (428)
|||.++. .|+.+ ...|.+.++..
T Consensus 467 --RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 467 --RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp --GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred --hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9985554 77777 77887776654
No 82
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.18 E-value=2.5e-11 Score=119.47 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccccc-----CCCC--------ChHHHHHHHHHHHHHHHHhC
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----GNAG--------EPAKLIRQRYREAADIIKKG 211 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s-----~~~G--------e~~~~Ir~~F~~A~~~i~~~ 211 (428)
.+..|||+||||||||++|++|++.. +.+|+.++++.+.. ...| ... .....|..|
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a------- 95 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA------- 95 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH-------
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc-------
Confidence 45679999999999999999999975 56889988876532 1111 100 011233433
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChh
Q 014243 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAP 284 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~A 284 (428)
..++|||||||.+... .+..|+.++++.....+.+. .....++.||+|||.. ..++++
T Consensus 96 ~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~riI~atn~~l~~~v~~g~fr~~ 160 (304)
T 1ojl_A 96 DGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDLAEEVSAGRFRQD 160 (304)
T ss_dssp TTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBC--CCCBCCCEEEEEESSCHHHHHHHTSSCHH
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCc--ccccCCeEEEEecCccHHHHHHhCCcHHH
Confidence 3579999999986431 23445566663322111111 1223568899999986 245566
Q ss_pred hcCCCCceEE-EeCCCHHHHH
Q 014243 285 LIRDGRMEKF-YWAPTREDRI 304 (428)
Q Consensus 285 LlR~gRfd~~-i~~P~~eeR~ 304 (428)
|.. ||..+ +.+|...+|.
T Consensus 161 L~~--Rl~~~~i~lPpL~eR~ 179 (304)
T 1ojl_A 161 LYY--RLNVVAIEMPSLRQRR 179 (304)
T ss_dssp HHH--HHSSEEEECCCSGGGG
T ss_pred HHh--hcCeeEEeccCHHHhH
Confidence 654 66444 4477766653
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=1.4e-10 Score=114.65 Aligned_cols=160 Identities=8% Similarity=-0.018 Sum_probs=102.7
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh------CCCeEEecccccccCCCCChHHHHHHHHHHHHHHH
Q 014243 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAADII 208 (428)
Q Consensus 135 ~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el------g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i 208 (428)
...+++++.. + +..+|||||||||||++|+++|+.+ ...++.++++. .. .+...+|++.+.+...-
T Consensus 7 ~~L~~~i~~~--~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~~id~ir~li~~~~~~p 78 (305)
T 2gno_A 7 ETLKRIIEKS--E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IGIDDIRTIKDFLNYSP 78 (305)
T ss_dssp HHHHHHHHTC--S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BCHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHCC--C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--CCHHHHHHHHHHHhhcc
Confidence 3344555433 2 4589999999999999999999975 33566666541 11 23455777777761110
Q ss_pred HhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCC
Q 014243 209 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 288 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~ 288 (428)
..+...|+||||+|.+... ....|+..++ ++..++.+|++||.++.|.++++.
T Consensus 79 ~~~~~kvviIdead~lt~~-------------a~naLLk~LE-------------ep~~~t~fIl~t~~~~kl~~tI~S- 131 (305)
T 2gno_A 79 ELYTRKYVIVHDCERMTQQ-------------AANAFLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKS- 131 (305)
T ss_dssp SSSSSEEEEETTGGGBCHH-------------HHHHTHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT-
T ss_pred ccCCceEEEeccHHHhCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEECChHhChHHHHc-
Confidence 1234679999999986321 1234545555 445677889999999999999987
Q ss_pred CCceEEEeCCCHHHHHHHHHHhccCCCCCHhHHHHHhcCCChhhHHh
Q 014243 289 GRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 289 gRfd~~i~~P~~eeR~~Il~~~~~~~~l~~~~la~lt~gfsgadL~~ 335 (428)
| -..+..|+.++..++++..+ +++.+.+ .+..|-.+..+.+
T Consensus 132 -R-~~~f~~l~~~~i~~~L~~~~---~i~~~~~-~~~~g~~~~al~~ 172 (305)
T 2gno_A 132 -R-VFRVVVNVPKEFRDLVKEKI---GDLWEEL-PLLERDFKTALEA 172 (305)
T ss_dssp -T-SEEEECCCCHHHHHHHHHHH---TTHHHHC-GGGGTCHHHHHHH
T ss_pred -e-eEeCCCCCHHHHHHHHHHHh---CCCHHHH-HHHCCCHHHHHHH
Confidence 5 22333888888888887776 3444433 4445544444443
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.17 E-value=4.3e-12 Score=111.05 Aligned_cols=90 Identities=12% Similarity=0.007 Sum_probs=64.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r 228 (428)
+..||||||||||||++|++++++.+ +++.++++.+...+ .+..|..+ ..++|||||+|.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a-------~~~~l~lDei~~l~~~- 90 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA-------EGGVLYVGDIAQYSRN- 90 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT-------TTSEEEEEECTTCCHH-
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC-------CCCeEEEeChHHCCHH-
Confidence 45699999999999999999999988 88889888765332 34455544 4679999999976432
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 014243 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (428)
Q Consensus 229 ~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 278 (428)
.+..|+++++ . ....++.+|+|||.+
T Consensus 91 ------------~q~~Ll~~l~--------~----~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 ------------IQTGITFIIG--------K----AERCRVRVIASCSYA 116 (143)
T ss_dssp ------------HHHHHHHHHH--------H----HTTTTCEEEEEEEEC
T ss_pred ------------HHHHHHHHHH--------h----CCCCCEEEEEecCCC
Confidence 1233445554 1 113567899999975
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.08 E-value=8e-11 Score=138.12 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=83.4
Q ss_pred CCcE--EEEEcCCCchHHHHHHHHHHHhCC---CeEEecccccc------------cCCCCC----hHHHHHHHHHHHHH
Q 014243 148 VPLI--LGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELE------------SGNAGE----PAKLIRQRYREAAD 206 (428)
Q Consensus 148 ~p~g--lLL~GpPGtGKT~LA~aIA~elg~---~~i~vs~s~L~------------s~~~Ge----~~~~Ir~~F~~A~~ 206 (428)
+|+| +|||||||||||+||++++.+... +-+.++..+.. ++|+++ +++.++.+|..|
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a-- 1156 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA-- 1156 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH--
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH--
Confidence 5566 999999999999999999998644 44444444433 778888 899999999988
Q ss_pred HHHhCCceEEEecccccccCCCC-----CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 014243 207 IIKKGKMCCLMINDLDAGAGRMG-----GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 279 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~~~r~-----~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~ 279 (428)
+...||+||+|++|+++++++ +..+..+..+.++++|.++ + +. ....+|.|| +||+..
T Consensus 1157 --r~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~-~--------~~---~~~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1157 --RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL-A--------GN---LKQSNTLLI-FINQIR 1219 (1706)
T ss_dssp --HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHH-H--------HH---HHHTTCEEE-EEECEE
T ss_pred --HhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHH-H--------hh---hccCCeEEE-Eecccc
Confidence 999999999999999998842 1112244555667666433 1 22 445677666 888753
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.05 E-value=5.9e-10 Score=101.71 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=60.2
Q ss_pred cccccccccCcCCCCCchhhHHHHHHHHHHHhhhCC-CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccc
Q 014243 109 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (428)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~-g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~ 184 (428)
.++.++|++..+.. + ..+.+...++.++... ....|.+++|+||||||||++|+++++++ +..++.++.++
T Consensus 18 ~~~~~~f~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 18 EILRASLSDVDLND---D--GRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp GGGCCCTTSSCCSS---H--HHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred HHHcCCHhhccCCC---h--hHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 33445666654431 1 1223444556665432 22234899999999999999999999997 66777777765
Q ss_pred cccCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 014243 185 LESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 185 L~s~~~Ge~-~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~ 225 (428)
+........ ...+...+... . .+.+|||||++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~----~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 93 LFRELKHSLQDQTMNEKLDYI----K--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHC---CCCHHHHHHH----H--HSSEEEEEEECCC-
T ss_pred HHHHHHHHhccchHHHHHHHh----c--CCCEEEEcCCCCCc
Confidence 542211000 00011112211 2 24699999997654
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.98 E-value=4.3e-10 Score=112.12 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~--~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
.|+.+...++|+||||||||+||.++|.+.|.. |+.....+..+.+..+.+..++.+++.. .... +||||++
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l----~~~~--LLVIDsI 191 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM----LQHR--VIVIDSL 191 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH----HHCS--EEEEECC
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHH----hhCC--EEEEecc
Confidence 455556778999999999999999999876554 5555224444444444555554444443 4444 9999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhh
Q 014243 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 285 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~AL 285 (428)
+.+.....+.+......+.+.+.|..+.. . ....++.+|+++| +...++++
T Consensus 192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~---------~---~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 192 KNVIGAAGGNTTSGGISRGAFDLLSDIGA---------M---AASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp TTTC-----------CCHHHHHHHHHHHH---------H---HHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccccccccccchHHHHHHHHHHHHHH---------H---HhhCCCEEEEEeC-CcccchhH
Confidence 99865443211111123444444443322 1 1224567888888 66677765
No 88
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.97 E-value=4.4e-10 Score=110.95 Aligned_cols=87 Identities=11% Similarity=0.173 Sum_probs=52.6
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC----CCeEEecccccccCCCCCh-HHHHHHHHHHHHHH
Q 014243 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEP-AKLIRQRYREAADI 207 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg----~~~i~vs~s~L~s~~~Ge~-~~~Ir~~F~~A~~~ 207 (428)
+...++.|+....-..+.+++||||||||||+||.+||+++. ..++.++.+++........ ...+...+..
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~---- 211 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA---- 211 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHH----
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHH----
Confidence 444566776543222368999999999999999999999754 7777777776543221110 0001111111
Q ss_pred HHhCCceEEEeccccccc
Q 014243 208 IKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 208 i~~~~p~ILfIDEiDa~~ 225 (428)
...+.||||||++...
T Consensus 212 --~~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 212 --VKNVPVLILDDIGAEQ 227 (308)
T ss_dssp --HHTSSEEEEETCCC--
T ss_pred --hcCCCEEEEcCCCCCC
Confidence 1235699999997643
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.87 E-value=5.2e-09 Score=98.08 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=71.5
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCc
Q 014243 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213 (428)
Q Consensus 134 ~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p 213 (428)
+...+.++. +++...++|||||||||||++|.++|+.+.-.++....+. + .|-.. .....
T Consensus 45 ~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s------------~f~l~----~l~~~ 104 (212)
T 1tue_A 45 LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--S------------HFWLE----PLTDT 104 (212)
T ss_dssp HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--S------------CGGGG----GGTTC
T ss_pred HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--c------------hhhhc----ccCCC
Confidence 445566665 3444568999999999999999999999864433211110 0 01000 11224
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCC---CCCChhhcCCC
Q 014243 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDF---STLYAPLIRDG 289 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-~~~~~V~VI~TTN~~---~~Ld~ALlR~g 289 (428)
.||+|||+|.- ..+.+...+.+++|.- .+.++..++. ......|+|+|||.. +...+.|..
T Consensus 105 kIiiLDEad~~------------~~~~~d~~lrn~ldG~-~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S-- 169 (212)
T 1tue_A 105 KVAMLDDATTT------------CWTYFDTYMRNALDGN-PISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES-- 169 (212)
T ss_dssp SSEEEEEECHH------------HHHHHHHHCHHHHHTC-CEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--
T ss_pred CEEEEECCCch------------hHHHHHHHHHHHhCCC-cccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--
Confidence 59999999731 1234445666777722 2222222221 122456999999983 333345554
Q ss_pred CceEEEe
Q 014243 290 RMEKFYW 296 (428)
Q Consensus 290 Rfd~~i~ 296 (428)
|+-.+-+
T Consensus 170 Ri~~f~F 176 (212)
T 1tue_A 170 RITVFEF 176 (212)
T ss_dssp SCEEEEC
T ss_pred hEEEEEc
Confidence 6665544
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.84 E-value=3.3e-09 Score=93.78 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
....++|+||+|+|||+|+++++..+ |...+.+++.++... + ...+|.||+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~----~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------D----AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------G----GGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------H----HHhCCCEEEEeCcccc
Confidence 45689999999999999999999987 777888888776643 1 1235789999999764
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.84 E-value=1.6e-08 Score=101.20 Aligned_cols=157 Identities=10% Similarity=0.129 Sum_probs=89.1
Q ss_pred CCcEEEE--EcCCCchHHHHHHHHHHHh---------CCCeEEecccccccC----------------CCCChHHHHHHH
Q 014243 148 VPLILGI--WGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKLIRQR 200 (428)
Q Consensus 148 ~p~glLL--~GpPGtGKT~LA~aIA~el---------g~~~i~vs~s~L~s~----------------~~Ge~~~~Ir~~ 200 (428)
.+..++| +||||||||+|++++++++ +..++.+++....+. ..|.+.. .+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~ 125 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPAL---DI 125 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHH---HH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HH
Confidence 4678999 9999999999999999886 456677765321100 0111111 12
Q ss_pred HHHHHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC--CCceEEEEeCC
Q 014243 201 YREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGND 277 (428)
Q Consensus 201 F~~A~~~i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~--~~V~VI~TTN~ 277 (428)
+......+. ...|.||+|||++.+...+. .. ...+. .|+.++. .. .... .++.+|+|||.
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-~~-----~~~l~-~l~~~~~--------~~--~~~~~~~~v~lI~~~~~ 188 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDEFQSMLSSPR-IA-----AEDLY-TLLRVHE--------EI--PSRDGVNRIGFLLVASD 188 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTHHHHSCTT-SC-----HHHHH-HHHTHHH--------HS--CCTTSCCBEEEEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEeCHHHHhhccC-cc-----hHHHH-HHHHHHH--------hc--ccCCCCceEEEEEEecc
Confidence 222222222 46799999999998754321 00 11222 2222332 00 0012 56789999987
Q ss_pred CC---CCC---hhhcCCCCceEEEe--CCCHHHHHHHHHHhcc----CCCCCHhH---HHHHhc
Q 014243 278 FS---TLY---APLIRDGRMEKFYW--APTREDRIGVCKGIFR----NDNVADDD---IVKLVD 326 (428)
Q Consensus 278 ~~---~Ld---~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~----~~~l~~~~---la~lt~ 326 (428)
++ .++ +.+.++ +...+. .++.++..+++...+. ...++.+. +.+.+.
T Consensus 189 ~~~~~~l~~~~~~~~~~--~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 189 VRALSYMREKIPQVESQ--IGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp THHHHHHHHHCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred ccHHHHHhhhcchhhhh--cCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 76 333 555553 333344 7789999999865543 22345443 666676
No 92
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.79 E-value=9.9e-09 Score=104.35 Aligned_cols=120 Identities=11% Similarity=0.072 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.+++.+..++|+||||+|||+|+++++..++..++.+..+. .. ..|... ...+.+++|+||++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~-------~~-----~~~~lg----~~~q~~~~l~dd~~~ 227 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL-------DR-----LNFELG----VAIDQFLVVFEDVKG 227 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT-------TT-----HHHHHG----GGTTCSCEEETTCCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc-------hh-----HHHHHH----HhcchhHHHHHHHHH
Confidence 36677889999999999999999999999876655433221 00 011111 233456789999998
Q ss_pred ccC-CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEeCCC
Q 014243 224 GAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 299 (428)
Q Consensus 224 ~~~-~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~P~ 299 (428)
... .+.-....... ....+.+.+| ..+.|+++||+++.+ ++++||||++..++.+.
T Consensus 228 ~~~~~r~l~~~~~~~---~~~~l~~~ld----------------G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 228 TGGESRDLPSGQGIN---NLDNLRDYLD----------------GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp STTTTTTCCCCSHHH---HHHTTHHHHH----------------CSSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHhhccccCcch---HHHHHHHHhc----------------CCCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 875 22211110000 0112222233 236789999999999 78999999999888444
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.59 E-value=1.2e-07 Score=88.00 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=74.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH--------hC-CCeEEecccccccCCC----------CChHH--HHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK--------MG-INPIMMSAGELESGNA----------GEPAK--LIRQRYREAAD 206 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e--------lg-~~~i~vs~s~L~s~~~----------Ge~~~--~Ir~~F~~A~~ 206 (428)
.+...|++|+||+|||++|.+.+.+ .| .+++..+..+|.-.+. ..... ..+..+..+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-- 81 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWI-- 81 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHT--
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHh--
Confidence 3558899999999999999886443 34 5555555554432221 11000 001122210
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhc
Q 014243 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALl 286 (428)
....+..+||+|||++.+.+.+..... ..+++. ++.. .....+-||++|+.++.|+.+++
T Consensus 82 ~~~~~~~~vliIDEAq~l~~~~~~~~e---~~rll~----~l~~-------------~r~~~~~iil~tq~~~~l~~~lr 141 (199)
T 2r2a_A 82 KKPENIGSIVIVDEAQDVWPARSAGSK---IPENVQ----WLNT-------------HRHQGIDIFVLTQGPKLLDQNLR 141 (199)
T ss_dssp TSGGGTTCEEEETTGGGTSBCCCTTCC---CCHHHH----GGGG-------------TTTTTCEEEEEESCGGGBCHHHH
T ss_pred hccccCceEEEEEChhhhccCccccch---hHHHHH----HHHh-------------cCcCCeEEEEECCCHHHHhHHHH
Confidence 002456899999999998765421111 112222 2211 22345678999999999999976
Q ss_pred CCCCceEEEe
Q 014243 287 RDGRMEKFYW 296 (428)
Q Consensus 287 R~gRfd~~i~ 296 (428)
. |++..++
T Consensus 142 ~--ri~~~~~ 149 (199)
T 2r2a_A 142 T--LVRKHYH 149 (199)
T ss_dssp T--TEEEEEE
T ss_pred H--HhheEEE
Confidence 4 9998888
No 94
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.57 E-value=3.3e-07 Score=98.14 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
..++|+||||||||++|++||+.+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 47999999999999999999998754
No 95
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.55 E-value=8e-08 Score=114.31 Aligned_cols=102 Identities=17% Similarity=0.271 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccc----cCCCC------------ChHHHHHHHHHHHH
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE----SGNAG------------EPAKLIRQRYREAA 205 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~----s~~~G------------e~~~~Ir~~F~~A~ 205 (428)
|++++.+++||||||||||+||.+++.+. |.....++..+.. .+..| ..++.++.++..+
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv- 1501 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 1501 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH-
Confidence 58889999999999999999999998884 4455555544321 11112 3455666555555
Q ss_pred HHHHhCCceEEEecccccccCCC---C--CCcccchhhHHHHHHHHHhhc
Q 014243 206 DIIKKGKMCCLMINDLDAGAGRM---G--GTTQYTVNNQMVNATLMNIAD 250 (428)
Q Consensus 206 ~~i~~~~p~ILfIDEiDa~~~~r---~--~~~~~~~~~~~v~~~L~~lld 250 (428)
+..+|++|||||++.+.+.. + +.+......+++.+.|.++..
T Consensus 1502 ---r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~ 1548 (2050)
T 3cmu_A 1502 ---RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1548 (2050)
T ss_dssp ---HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ---hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHH
Confidence 88999999999999887642 1 112222245666666666554
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.48 E-value=1.2e-06 Score=85.13 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=86.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc------------c---CCCCC---------------------h
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE------------S---GNAGE---------------------P 193 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~------------s---~~~Ge---------------------~ 193 (428)
..++|+||+|+|||+|++.++++.+ .+.+++.... . ...+. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5899999999999999999999986 4444432211 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEE
Q 014243 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273 (428)
Q Consensus 194 ~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~ 273 (428)
...+..+++..........|.+|+|||++.+..... . ....+...|..+++ . ..++.+|+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~--~----~~~~~~~~L~~~~~-------------~-~~~~~~il 169 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS--R----GGKELLALFAYAYD-------------S-LPNLKIIL 169 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT--T----TTHHHHHHHHHHHH-------------H-CTTEEEEE
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc--c----chhhHHHHHHHHHH-------------h-cCCeEEEE
Confidence 011223333222222333499999999988754110 0 01112223333333 0 13567787
Q ss_pred EeCCCC---------CCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccCCC--CCHhH---HHHHhcCCChh
Q 014243 274 TGNDFS---------TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADDD---IVKLVDTFPGQ 331 (428)
Q Consensus 274 TTN~~~---------~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~~--l~~~~---la~lt~gfsga 331 (428)
|+.... ....++. ||....+. ..+.++-.+++...+...+ ++.+. +...+.|++..
T Consensus 170 ~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 170 TGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp EESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHH
T ss_pred ECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH
Confidence 775432 1222332 45554555 6788888888887765433 44333 66677887754
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.44 E-value=6.4e-06 Score=80.07 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=87.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc-----c---------------------------CCCC------
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-----S---------------------------GNAG------ 191 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~-----s---------------------------~~~G------ 191 (428)
..++|+||+|+|||+|++.++++.+..++.+++.... + ...|
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 4899999999999999999999987777777654321 0 0000
Q ss_pred -C-------hHHHHHHHHHHHHHHHHh-C-CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcc
Q 014243 192 -E-------PAKLIRQRYREAADIIKK-G-KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 261 (428)
Q Consensus 192 -e-------~~~~Ir~~F~~A~~~i~~-~-~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~ 261 (428)
. ....+..+++. +.. . .|.+|+|||++.+..... .. . -. .|..+.+ .
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~----l~~~~~~~~vlvlDe~~~~~~~~~-~~---~-~~----~l~~~~~---------~- 167 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLES----FEQASKDNVIIVLDEAQELVKLRG-VN---L-LP----ALAYAYD---------N- 167 (357)
T ss_dssp SEEEC-----CCCHHHHHHH----HHHTCSSCEEEEEETGGGGGGCTT-CC---C-HH----HHHHHHH---------H-
T ss_pred EEEeccCCcchhhHHHHHHH----HHhcCCCCeEEEEECHHHhhccCc-hh---H-HH----HHHHHHH---------c-
Confidence 0 00112222222 222 1 499999999998754211 00 1 11 2222222 0
Q ss_pred ccCCCCCceEEEEeCCCCC---------CChhhcCCCCceEEEe--CCCHHHHHHHHHHhccC---CCCCHhHHHHHhcC
Q 014243 262 NKEENPRVPIIVTGNDFST---------LYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN---DNVADDDIVKLVDT 327 (428)
Q Consensus 262 ~~~~~~~V~VI~TTN~~~~---------Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~---~~l~~~~la~lt~g 327 (428)
..++.+|+|++.... ...++ .||+...+. ..+.++..+++...+.. ..-+...+.+.+.|
T Consensus 168 ----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G 241 (357)
T 2fna_A 168 ----LKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGG 241 (357)
T ss_dssp ----CTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCS
T ss_pred ----CCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCC
Confidence 135678888875321 11222 246544444 77888988888776532 11123568888999
Q ss_pred CChh
Q 014243 328 FPGQ 331 (428)
Q Consensus 328 fsga 331 (428)
++..
T Consensus 242 ~P~~ 245 (357)
T 2fna_A 242 IPGW 245 (357)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8875
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.43 E-value=8.9e-07 Score=85.93 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=31.5
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
+....+++++.. .++..+|+||||||||||++|.+||+.++.
T Consensus 89 ~~~~l~~~l~~~-~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 89 AASVFLGWATKK-FGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHHTTC-STTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCC-CCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 445566666531 123468999999999999999999998765
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.38 E-value=1.3e-06 Score=106.75 Aligned_cols=140 Identities=10% Similarity=0.091 Sum_probs=91.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r 228 (428)
.+|+++.||||||||.+++++|+.+|.+++.+++++-.+ ...+..+|..+ . ...+.++|||++.+....
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~----~-~~Gaw~~~DE~nr~~~ev 713 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGI----T-QIGAWGCFDEFNRLDEKV 713 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHH----H-HHTCEEEEETTTSSCHHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHH----H-hcCCEeeehhhhhcChHH
Confidence 468899999999999999999999999999999886552 24445566555 2 224799999998653321
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC----CCCCCChhhcCCCCceEEEe-CCCHHHH
Q 014243 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 303 (428)
Q Consensus 229 ~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN----~~~~Ld~ALlR~gRfd~~i~-~P~~eeR 303 (428)
-.+..+.+...+.-+.+....+...|.. ....+...|++|.| ....||++|.+ ||-.+.. .|+.+..
T Consensus 714 -----Ls~l~~~l~~i~~al~~~~~~i~~~g~~-i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr~v~m~~Pd~~~i 785 (2695)
T 4akg_A 714 -----LSAVSANIQQIQNGLQVGKSHITLLEEE-TPLSPHTAVFITLNPGYNGRSELPENLKK--SFREFSMKSPQSGTI 785 (2695)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCSEEECSSSE-EECCTTCEEEEEECCCSSSSCCCCHHHHT--TEEEEECCCCCHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCCcEEeeCCcE-EecCCCceEEEEeCCCccCcccccHHHHh--heEEEEeeCCCHHHH
Confidence 1122222222222222333333333321 12235667889999 67789999987 5533333 8999998
Q ss_pred HHHH
Q 014243 304 IGVC 307 (428)
Q Consensus 304 ~~Il 307 (428)
.+|+
T Consensus 786 ~ei~ 789 (2695)
T 4akg_A 786 AEMI 789 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8884
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.36 E-value=2.4e-07 Score=114.01 Aligned_cols=141 Identities=11% Similarity=0.165 Sum_probs=88.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH-hCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH------------hCCceEE
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK-MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK------------KGKMCCL 216 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e-lg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~------------~~~p~IL 216 (428)
+.|||+||||||||.++...... .+.+++.++.+.-. +...+.+.++...+..+ .++.+||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 45999999999999877654444 35556666665432 23344444432100000 1445799
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-----CCCCCceEEEEeCCC-----CCCChhhc
Q 014243 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDF-----STLYAPLI 286 (428)
Q Consensus 217 fIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-----~~~~~V~VI~TTN~~-----~~Ld~ALl 286 (428)
|||||+.-..... ++ +....+|..++|+- +.|.. ....++.+|+|+|.| ..|+++|+
T Consensus 1379 FiDDiNmp~~D~y-Gt------Q~~ielLrqlld~~------g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~ 1445 (3245)
T 3vkg_A 1379 FCDEINLPSTDKY-GT------QRVITFIRQMVEKG------GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFL 1445 (3245)
T ss_dssp EETTTTCCCCCTT-SC------CHHHHHHHHHHHHS------EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EecccCCCCcccc-cc------ccHHHHHHHHHHcC------CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHH
Confidence 9999986443332 22 33445666666622 22221 123677899999987 47999999
Q ss_pred CCCCceEEEe-CCCHHHHHHHHHHhc
Q 014243 287 RDGRMEKFYW-APTREDRIGVCKGIF 311 (428)
Q Consensus 287 R~gRfd~~i~-~P~~eeR~~Il~~~~ 311 (428)
| ||-.+.. .|+.++...|+..++
T Consensus 1446 r--~F~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1446 R--HAPILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp T--TCCEEECCCCCHHHHHHHHHHHH
T ss_pred h--hceEEEeCCCCHHHHHHHHHHHH
Confidence 9 7777666 999999999965543
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.14 E-value=1.6e-05 Score=72.48 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=33.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccc
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~ 184 (428)
|+++...++|+||||+|||+++..+|...+...++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 6777788999999999999999999986676777766543
No 102
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.11 E-value=2.1e-06 Score=87.01 Aligned_cols=106 Identities=17% Similarity=0.182 Sum_probs=64.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC---CCeEEecccccccC-------------CCCChHHHHHHHHHHHHHHHHhCCc
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG-------------NAGEPAKLIRQRYREAADIIKKGKM 213 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~s~L~s~-------------~~Ge~~~~Ir~~F~~A~~~i~~~~p 213 (428)
..+||+|++|||||++|++|..... .+|+.++++.+-.. +.|.... ....|..| ..
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a-------~~ 232 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA-------DG 232 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT-------TT
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC-------CC
Confidence 4579999999999999999998864 57999998765321 1111100 01233333 45
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 014243 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 278 (428)
.+||||||+.+.. .++..|+.+++......+.+. .....++-||+|||..
T Consensus 233 gtlfldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~ 282 (387)
T 1ny5_A 233 GTLFLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRN 282 (387)
T ss_dssp SEEEEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSC
T ss_pred cEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCCCC
Confidence 7999999987632 233445555552221112221 1123567899999973
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.98 E-value=4.8e-05 Score=68.85 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINP 177 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~ 177 (428)
.+.|.||+|+|||||+++|+..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999987544
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.98 E-value=1.1e-05 Score=96.21 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=61.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCC----CC--------ChHHHHHHHHHHHHHHHH
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AG--------EPAKLIRQRYREAADIIK 209 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~----~G--------e~~~~Ir~~F~~A~~~i~ 209 (428)
|+.+...++|+|+||||||+||..+|..+ +.++++++..+....+ .| .++..+.+++..+..+.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 67788999999999999999999999886 3458888876654432 22 122335566666655556
Q ss_pred hCCceEEEecccccccC
Q 014243 210 KGKMCCLMINDLDAGAG 226 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~ 226 (428)
...|++||||.|..+..
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 68899999999999875
No 105
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.94 E-value=2.5e-05 Score=78.69 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=54.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII 208 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~----~~Ge--------~~~~Ir~~F~~A~~~i 208 (428)
.|+++...++|+||||||||+||..+|..+ +-.+++++.....+. ..|- ....+.+....+..++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 367777889999999999999999999874 556666665543210 0000 0011223334443445
Q ss_pred HhCCceEEEecccccccC
Q 014243 209 KKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~ 226 (428)
+...+.+++||.+..+.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 568899999999988765
No 106
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.93 E-value=2.5e-06 Score=88.93 Aligned_cols=124 Identities=15% Similarity=0.066 Sum_probs=69.1
Q ss_pred EEEEEcCCCchHHHHHHHH-HHHhCCCeEEecc--c---ccccCCCCChH-HHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014243 151 ILGIWGGKGQGKSFQCELV-FAKMGINPIMMSA--G---ELESGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aI-A~elg~~~i~vs~--s---~L~s~~~Ge~~-~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|||.|+||| ||++|+++ ++-+.... .+++ + .|.....+.+. ..-...+.. ....+||||||+.
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~L-------AdgGvl~lDEIn~ 311 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGWALRAGAAVL-------ADGGILAVDHLEG 311 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSEEEEECHHHH-------TTTSEEEEECCTT
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCcccCCCeeEE-------cCCCeeehHhhhh
Confidence 6999999999 99999999 66543322 2211 0 01100000000 000011222 2346999999987
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----------CCChhhcCCCCce
Q 014243 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----------TLYAPLIRDGRME 292 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----------~Ld~ALlR~gRfd 292 (428)
+..+ ....|++.|...+ +.+.|. ....+..||+|+|... .|+++++. |||
T Consensus 312 ~~~~-------------~qsaLlEaMEe~~-VtI~G~---~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFD 372 (506)
T 3f8t_A 312 APEP-------------HRWALMEAMDKGT-VTVDGI---ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFD 372 (506)
T ss_dssp CCHH-------------HHHHHHHHHHHSE-EEETTE---EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCS
T ss_pred CCHH-------------HHHHHHHHHhCCc-EEECCE---EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--hee
Confidence 5322 2345556655322 333443 3347789999999875 88999996 999
Q ss_pred EEEe---CCCHHH
Q 014243 293 KFYW---APTRED 302 (428)
Q Consensus 293 ~~i~---~P~~ee 302 (428)
.++. .|+.+.
T Consensus 373 Li~i~~d~pd~e~ 385 (506)
T 3f8t_A 373 LIAFLGVDPRPGE 385 (506)
T ss_dssp EEEETTC------
T ss_pred eEEEecCCCChhH
Confidence 8887 566554
No 107
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.92 E-value=1.7e-05 Score=70.24 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
|..|+|.|+||+|||++++++++.++.+++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 5679999999999999999999999998887554
No 108
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.89 E-value=1.4e-05 Score=80.58 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=73.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCC--eEEecccccccCCCCChHHHHHHHHHHH-----------HHHHHhCCceEE
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMCCL 216 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~--~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A-----------~~~i~~~~p~IL 216 (428)
..+|++|++||||+.+|++|....+.. |+.++++.+-... .-..+|... ...+.......|
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~------~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtl 226 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQEL------AESELFGHEKGAFTGALTRKKGKLELADQGTL 226 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTT------HHHHHHEECSCSSSSCCCCEECHHHHTTTSEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHH------HHHHhcCccccccCCcccccCChHhhcCCCeE
Confidence 349999999999999999999887654 8999988664221 111222110 001112244689
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCce----
Q 014243 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME---- 292 (428)
Q Consensus 217 fIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd---- 292 (428)
|||||+.+.. .++..|+.+++......+.+. .....++-+|+|||.. + ..++..|+|.
T Consensus 227 fldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~--l-~~~v~~g~fr~dL~ 288 (368)
T 3dzd_A 227 FLDEVGELDQ-------------RVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNKN--L-EEEIKKGNFREDLY 288 (368)
T ss_dssp EEETGGGSCH-------------HHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESSC--H-HHHHHTTSSCHHHH
T ss_pred EecChhhCCH-------------HHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCCC--H-HHHHHcCCccHHHH
Confidence 9999987632 233455566653222222221 1122467799999953 1 2233344443
Q ss_pred ----E-EEeCCCHHHH
Q 014243 293 ----K-FYWAPTREDR 303 (428)
Q Consensus 293 ----~-~i~~P~~eeR 303 (428)
. .+.+|...+|
T Consensus 289 ~rl~~~~i~lPpLreR 304 (368)
T 3dzd_A 289 YRLSVFQIYLPPLRER 304 (368)
T ss_dssp HHHTSEEEECCCGGGS
T ss_pred HHhCCeEEeCCChhhc
Confidence 3 3457766665
No 109
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.88 E-value=3.6e-05 Score=71.15 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=52.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH--h-------CCCeEEeccccccc--------CCCCC--------------
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK--M-------GINPIMMSAGELES--------GNAGE-------------- 192 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e--l-------g~~~i~vs~s~L~s--------~~~Ge-------------- 192 (428)
.|++....++|+||||+|||+|++.+|.. + +...++++...... ...|-
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 46777788999999999999999999995 2 34566666543100 00110
Q ss_pred -hHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 014243 193 -PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 193 -~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~ 227 (428)
........+..+...+....|.+|+|||+......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11111122333444456678999999999877543
No 110
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.88 E-value=1.5e-05 Score=79.95 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=53.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC----CCCChH--------HHHHHHHHHHHHHH
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEPA--------KLIRQRYREAADII 208 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~----~~Ge~~--------~~Ir~~F~~A~~~i 208 (428)
.|+++...++|+||||+|||+||..++... |...++++...-.+. ..|-.. ..+.+.+..+..++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 367777889999999999999999988763 556666655432211 111000 01223333443444
Q ss_pred HhCCceEEEecccccccC
Q 014243 209 KKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~ 226 (428)
+...|.+|+||++..+..
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 577899999999998874
No 111
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.87 E-value=5.1e-05 Score=76.61 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=54.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCC----CCCh--------HHHHHHHHHHHHHHH
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEP--------AKLIRQRYREAADII 208 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~----~Ge~--------~~~Ir~~F~~A~~~i 208 (428)
.|++....++|+||||+|||+||..+|..+ |..+++++...-.+.. .|.. ...+.+++..+..++
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 367777889999999999999999888763 5566666654322110 1110 001223333343444
Q ss_pred HhCCceEEEecccccccC
Q 014243 209 KKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~ 226 (428)
+...+.+|+||.+..+..
T Consensus 149 ~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTTCCSEEEEECTTTCCC
T ss_pred hcCCCCEEEEeChHHhcc
Confidence 567899999999998875
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.82 E-value=0.00011 Score=67.05 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
|++....++|+||||+|||+|++.++... +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56666789999999999999999999653 44544443
No 113
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.77 E-value=2.6e-05 Score=78.50 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=53.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC----CCCChH--------HHHHHHHHHHHHHH
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEPA--------KLIRQRYREAADII 208 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~----~~Ge~~--------~~Ir~~F~~A~~~i 208 (428)
.|+++...++|+||||+|||+||..+|.++ |..+++++...-.+. ..|... ....++...+..++
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 367777899999999999999999988763 566777766432210 011000 00122233333344
Q ss_pred HhCCceEEEecccccccC
Q 014243 209 KKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~ 226 (428)
+...+.+|+||.+..+..
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 567899999999988864
No 114
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.76 E-value=3.7e-05 Score=90.73 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=58.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccc----cCCCCC--------hHHHHHHHHHHHHHHHH
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE----SGNAGE--------PAKLIRQRYREAADIIK 209 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~----s~~~Ge--------~~~~Ir~~F~~A~~~i~ 209 (428)
|+.+...++|+||||+|||+||..+|.++ |..+++++..+.. ....|- .+..+.+++..+..+++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 67788899999999999999999998874 4467777765443 111221 11123455555555556
Q ss_pred hCCceEEEecccccccC
Q 014243 210 KGKMCCLMINDLDAGAG 226 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~ 226 (428)
...|.+|+||.+..+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 78999999999999874
No 115
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.74 E-value=0.00016 Score=68.56 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhh-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc
Q 014243 129 MDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (428)
Q Consensus 129 ~d~~~~~i~K~~l~-~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L 185 (428)
...+...+.+.++. ......|..++|.||||+|||++|+.++..++..++.+++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 33444444455443 2345668899999999999999999999999876777777665
No 116
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.73 E-value=9.1e-05 Score=57.95 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 297 APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 297 ~P~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+|+.++|.+|++.++++. +++.+.|++.|+||||+||..
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~ 44 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG 44 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHH
Confidence 699999999999998763 678889999999999999974
No 117
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.72 E-value=0.00031 Score=69.09 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=87.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCC-eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GIN-PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~-~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
+.+...|||||+|+||+..++.+++.+ +.+ +..+. +. ++ ..++++.+.+...--.+...|++|||++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~----~~--~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---ID----PN--TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---CC----TT--CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---ec----CC--CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 356689999999999999999999875 332 11111 11 11 2245555555222225667899999997
Q ss_pred c-ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC------CCChhhcCCCCceEEE
Q 014243 223 A-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS------TLYAPLIRDGRMEKFY 295 (428)
Q Consensus 223 a-~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~------~Ld~ALlR~gRfd~~i 295 (428)
. +... ....|+..+. ++.+.+++|++|+.++ .+.+++.. |+..+-
T Consensus 87 ~kl~~~-------------~~~aLl~~le-------------~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~~~ 138 (343)
T 1jr3_D 87 NGPNAA-------------INEQLLTLTG-------------LLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVT 138 (343)
T ss_dssp SCCCTT-------------HHHHHHHHHT-------------TCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEEEE
T ss_pred CCCChH-------------HHHHHHHHHh-------------cCCCCeEEEEEcCCCChhhHhhHHHHHHHh--CceEEE
Confidence 6 3211 1123444444 3344566777766643 46677765 444444
Q ss_pred e-CCCHHHHHHHHHHhccCCC--CCHhHHHHHhcCCCh
Q 014243 296 W-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (428)
Q Consensus 296 ~-~P~~eeR~~Il~~~~~~~~--l~~~~la~lt~gfsg 330 (428)
. .|+.++....++..+...+ ++.+.+..+++...|
T Consensus 139 ~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 139 CQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp ECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 4 7788888888888876665 455555555544333
No 118
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.71 E-value=5.7e-05 Score=73.45 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHHHhhhC-CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc
Q 014243 125 APAFMDKLVVHITKNFMSL-PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (428)
Q Consensus 125 ~~~~~d~~~~~i~K~~l~~-~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~ 186 (428)
++....++...+...++.. .....|..++|.||||+|||++|+.++++++..++.+++..+.
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 4555556666777777642 3344578999999999999999999999986556777765443
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.70 E-value=7.2e-05 Score=73.72 Aligned_cols=83 Identities=10% Similarity=0.167 Sum_probs=54.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCeEEeccccccc--------CCCCC--------------
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE-------------- 192 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---------g~~~i~vs~s~L~s--------~~~Ge-------------- 192 (428)
.|+++...++|+||||+|||++|..+|... +...++++...-.+ ...|-
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 467777889999999999999999999875 44566666554210 00111
Q ss_pred -hHHHHHHHHHHHHHHHHh-CCceEEEecccccccC
Q 014243 193 -PAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAG 226 (428)
Q Consensus 193 -~~~~Ir~~F~~A~~~i~~-~~p~ILfIDEiDa~~~ 226 (428)
+...+.+++..+...++. ..+.+|+||.+..+..
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011111334444455566 7899999999988753
No 120
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.70 E-value=0.00017 Score=89.42 Aligned_cols=140 Identities=17% Similarity=0.149 Sum_probs=89.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r 228 (428)
..|..+.||+|||||.+++.+|+.+|.+++.+++++-.+ .+.+..+|.-+ ++. .+..+|||++.+-..
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~---~~~--GaW~cfDEfNrl~~~- 671 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGL---CQC--GAWGCFDEFNRLEER- 671 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHH---HHH--TCEEEEETTTSSCHH-
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhH---hhc--CcEEEehhhhcCCHH-
Confidence 346779999999999999999999999999999875442 23444555443 133 457889999765321
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCC-CccccCCCCCceEEEEeC----CCCCCChhhcCCCCceEEEe-CCCHHH
Q 014243 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTRED 302 (428)
Q Consensus 229 ~~~~~~~~~~~~v~~~L~~lld~~~~v~l~-~~~~~~~~~~V~VI~TTN----~~~~Ld~ALlR~gRfd~~i~-~P~~ee 302 (428)
.-.+..+.+......+.+....+.+. |. ...-.+..-|++|.| ....||++|.. ||--+-. .|+.+.
T Consensus 672 ----vLSvv~~qi~~I~~a~~~~~~~~~~~~G~-~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 672 ----ILSAVSQQIQTIQVALKENSKEVELLGGK-NISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRSMAMIKPDREM 744 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEEEECCSCCHHH
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCeEEecCCC-EEeecCCeEEEEEeCCCccCcccChHHHHh--hcEEEEEeCCCHHH
Confidence 11222222332223334444445554 42 112345677899999 46789999987 4444443 999988
Q ss_pred HHHHH
Q 014243 303 RIGVC 307 (428)
Q Consensus 303 R~~Il 307 (428)
..+|+
T Consensus 745 i~ei~ 749 (3245)
T 3vkg_A 745 IAQVM 749 (3245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 121
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.65 E-value=3.9e-05 Score=68.46 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=30.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.+.|..|+|.|+||+|||++++.+++.+|..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4567889999999999999999999999987765
No 122
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.64 E-value=3.8e-05 Score=68.44 Aligned_cols=33 Identities=12% Similarity=-0.124 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
++.|+|.||||||||++++.+|+.+|++++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 568999999999999999999999999888643
No 123
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.64 E-value=0.00013 Score=58.62 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHh
Q 014243 297 APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 297 ~P~~eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~ 335 (428)
+|+.++|.+||+.++++ .+++++.|++.|+||||+||..
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~ 52 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG 52 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 89999999999999976 3678889999999999999984
No 124
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.62 E-value=0.00011 Score=72.95 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=50.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEeccccccc----CCCCCh--------HHHHHHH-HHHHH
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----GNAGEP--------AKLIRQR-YREAA 205 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~s----~~~Ge~--------~~~Ir~~-F~~A~ 205 (428)
.|+++. .++|+||||+|||+||..++.++ |-..++++..+-.+ ...|-. +....+. +..+.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 355544 68999999999999998776663 55667776553221 111110 0011222 22222
Q ss_pred HH--HHhCCceEEEecccccccCC
Q 014243 206 DI--IKKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 206 ~~--i~~~~p~ILfIDEiDa~~~~ 227 (428)
.+ ++..+|.+|+||-|-++.++
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHHhhccCceEEEEecccccccc
Confidence 22 46778999999999988753
No 125
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.62 E-value=0.00024 Score=65.68 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHH
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVF 170 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA 170 (428)
|++....++|.||+|+|||+|+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 66677889999999999999999998
No 126
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.55 E-value=0.00022 Score=71.25 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=53.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCeEEeccccccc--------CCCC-------------C-
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAG-------------E- 192 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg---------~~~i~vs~s~L~s--------~~~G-------------e- 192 (428)
.|++....++|+||||+|||+|++.++.... -..++++..+... ...+ .
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 4677778899999999999999999999862 2346665543210 0000 0
Q ss_pred -hHHHHHHHHHHHHHHHHh-----CCceEEEeccccccc
Q 014243 193 -PAKLIRQRYREAADIIKK-----GKMCCLMINDLDAGA 225 (428)
Q Consensus 193 -~~~~Ir~~F~~A~~~i~~-----~~p~ILfIDEiDa~~ 225 (428)
......+++..+..++.. ..|.+|+|||+-++.
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence 011123344555555555 789999999997765
No 127
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.52 E-value=0.00021 Score=68.06 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE 186 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~ 186 (428)
.+..|+|.|+||+|||++|+.++.. .|..++.++...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 3567999999999999999999998 78888866655543
No 128
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.51 E-value=0.00023 Score=72.69 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=51.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCeEEeccccccc--------CCCCCh-------------
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGEP------------- 193 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---------g~~~i~vs~s~L~s--------~~~Ge~------------- 193 (428)
.|+++-..++|+||||||||+|++.+|-.. +-..++++..+... ..+|-.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 367777889999999999999999776443 22356665543211 001110
Q ss_pred --HHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014243 194 --AKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 194 --~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
..........+...+....|.+|+||++-....
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 111123334444555677899999999977654
No 129
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=7.2e-05 Score=68.00 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
.+.+.|+|.||||||||++++++|+.+|..++...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 44568999999999999999999999999887643
No 130
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.49 E-value=6.7e-05 Score=66.73 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
..++.|+|.|+||+|||++++.+++.++..++.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456799999999999999999999999877654
No 131
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.45 E-value=8.1e-05 Score=69.87 Aligned_cols=40 Identities=33% Similarity=0.616 Sum_probs=33.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L 185 (428)
...+.|+.|+|.||||+||+|+|+.||+++|+.. ++.+++
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdl 63 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDL 63 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHH
Confidence 4567789999999999999999999999998754 454443
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.00057 Score=63.02 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=29.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~ 182 (428)
.|+++...++|+||||+|||+++..+|.. .+...++++.
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 36666778999999999999999887765 3555555543
No 133
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.43 E-value=0.00023 Score=69.70 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=25.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.|+++...++|+||||+|||++|..+|..
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36777788999999999999999999876
No 134
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.41 E-value=0.00011 Score=65.41 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
|..|+|.|+||+|||++|+.+++.+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 6789999999999999999999999987654
No 135
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.40 E-value=0.00012 Score=63.84 Aligned_cols=31 Identities=16% Similarity=-0.060 Sum_probs=27.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
.|+|.||||+|||++++.+++.++++++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876644
No 136
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.40 E-value=0.00036 Score=63.66 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.|++....+.|.||+|+|||+|++.++...
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 367777889999999999999999999854
No 137
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.39 E-value=0.00015 Score=65.76 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
..|..|+|.|+||+|||++|+.+++.+|+.++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4567899999999999999999999999887664
No 138
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.39 E-value=0.00042 Score=64.13 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=67.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH---hCCCeEEe---ccc------ccccCC-----------CCC------hHHHHHHHH
Q 014243 151 ILGIWGGKGQGKSFQCELVFAK---MGINPIMM---SAG------ELESGN-----------AGE------PAKLIRQRY 201 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e---lg~~~i~v---s~s------~L~s~~-----------~Ge------~~~~Ir~~F 201 (428)
.|++|+++|.|||+.|-.+|-. .|..+..+ ++. .+.... .-. .....+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 5889999999999999988877 47776665 331 122221 101 123455667
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 014243 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (428)
Q Consensus 202 ~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 281 (428)
..+.+.+......+|+|||+-....-.- .....+. +++. ....++-||+|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~------l~~~ev~----~~l~-------------~Rp~~~~vIlTGr~a--- 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY------LPLEEVI----SALN-------------ARPGHQTVIITGRGC--- 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS------SCHHHHH----HHHH-------------TSCTTCEEEEECSSC---
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC------CCHHHHH----HHHH-------------hCcCCCEEEEECCCC---
Confidence 7776666678889999999954322110 0111222 2223 334667899999985
Q ss_pred Chhhc
Q 014243 282 YAPLI 286 (428)
Q Consensus 282 d~ALl 286 (428)
+++|+
T Consensus 164 p~~l~ 168 (196)
T 1g5t_A 164 HRDIL 168 (196)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 56665
No 139
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.38 E-value=0.00011 Score=65.47 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=27.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|+|.|+||+|||++|+.+++.+|++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 589999999999999999999999987763
No 140
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.36 E-value=0.00012 Score=64.39 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
+..+.|.||||||||++++.+|..++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4569999999999999999999999976554
No 141
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.35 E-value=0.00035 Score=69.46 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=52.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCeEEeccccccc--------CCCCC--------------
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE-------------- 192 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---------g~~~i~vs~s~L~s--------~~~Ge-------------- 192 (428)
.|++....++|+||||+|||++|..+|... +...++++.....+ ...|.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 367777789999999999999999999873 44566666543211 00010
Q ss_pred --hHHHHHHHHHHHHHHHHh--CCceEEEecccccccC
Q 014243 193 --PAKLIRQRYREAADIIKK--GKMCCLMINDLDAGAG 226 (428)
Q Consensus 193 --~~~~Ir~~F~~A~~~i~~--~~p~ILfIDEiDa~~~ 226 (428)
.+. +..+...+..+++. ..+.+|+||.+..+..
T Consensus 197 ~~~e~-~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 197 YTSEH-QMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp CSTTH-HHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CCHHH-HHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 111 11233334444566 7899999999988763
No 142
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.34 E-value=0.00014 Score=64.97 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.+..|+|.|+||+|||++|+.+|+.+|..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456899999999999999999999999876654
No 143
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.34 E-value=0.00015 Score=63.66 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=28.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
..|+|.|+||||||++++.+|+.+|++++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4789999999999999999999999988764
No 144
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.34 E-value=0.00011 Score=65.51 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=32.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccc
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~ 184 (428)
.++.+..++|.||||+||||++++++...+...+.+++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 3456678999999999999999999998777767666543
No 145
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.33 E-value=0.00012 Score=65.85 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH-hCCCeEEe
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK-MGINPIMM 180 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e-lg~~~i~v 180 (428)
+..|+|.|+||||||++++.+|+. +|++++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 457999999999999999999999 78777654
No 146
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.33 E-value=0.00042 Score=63.93 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH----hCCCeEEecc
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 182 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~e----lg~~~i~vs~ 182 (428)
|+++...++|+|+||+|||++|..+|.+ .+.+.++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 6777778999999999999999876543 3666666553
No 147
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.33 E-value=0.00015 Score=66.76 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.+..|+|.|+||+|||++|+.+|+.+++.++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 456899999999999999999999999876654
No 148
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.33 E-value=0.00013 Score=64.62 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=26.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.++|.||||+|||++|+.+|+.+++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48899999999999999999999987765
No 149
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.32 E-value=0.0022 Score=67.43 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
.++.++|+||+|+|||+||..+++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 357899999999999999999875
No 150
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.32 E-value=0.00018 Score=63.80 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|+.|+|.|+||+|||++|+.+++.+|+.++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 467899999999999999999999999776654
No 151
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.32 E-value=0.0001 Score=64.74 Aligned_cols=30 Identities=30% Similarity=0.274 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH-HhCCCeE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFA-KMGINPI 178 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~-elg~~~i 178 (428)
|..|+|.|+||+|||++|+.+++ .+++.++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 67899999999999999999999 4654433
No 152
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.29 E-value=0.00013 Score=63.14 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=26.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
..|+|.||||+|||++|+.+ +.+|.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 36889999999999999999 8899887764
No 153
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.28 E-value=0.00012 Score=64.73 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i 178 (428)
|..|+|.|+||+|||++|+.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 567999999999999999999999999876
No 154
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.28 E-value=0.00014 Score=65.16 Aligned_cols=32 Identities=38% Similarity=0.567 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
|..|+|.|+||+|||++|+.+++.+|+.++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 56799999999999999999999999766553
No 155
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.28 E-value=0.00015 Score=64.49 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
+..++|.|+||+|||++++.+++.+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4578999999999999999999999876554
No 156
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.27 E-value=0.00014 Score=67.44 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
..|..|+|.|+||+|||++|+.+|+++|..++.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3467899999999999999999999999876653
No 157
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.26 E-value=0.00019 Score=64.97 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
++.|+|.|+||+|||++|+.+++.+|..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5689999999999999999999999987665
No 158
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.25 E-value=0.00018 Score=65.11 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.++.|+|.|+||+|||++|+.+++++|+.++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 467899999999999999999999999866654
No 159
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.24 E-value=0.0013 Score=67.75 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEecc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~ 182 (428)
.|+.+..-++|.|+||+|||+++..+|... |.++++++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 467777789999999999999999888763 556666553
No 160
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.22 E-value=0.00018 Score=63.78 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+..|+|.||||+|||++++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999987
No 161
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.22 E-value=0.0002 Score=67.55 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
+.|..|+|.||||+|||++|+.+++++|+.++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3578899999999999999999999998766653
No 162
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.19 E-value=0.00023 Score=62.38 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=27.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
+.|+|.|+||+|||++|+.+++.+|++++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987765
No 163
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.18 E-value=0.00028 Score=65.76 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.+..|+|.|+||+|||++|+.+|+++++.++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 346799999999999999999999999876654
No 164
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.16 E-value=0.0003 Score=66.02 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|..++|.||||+||||++++|++++|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 36789999999999999999999999986554
No 165
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.15 E-value=0.00099 Score=68.92 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=66.7
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe-----CCCCCCChhhc
Q 014243 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG-----NDFSTLYAPLI 286 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT-----N~~~~Ld~ALl 286 (428)
...|||+||||+++...+ +....+...-+++.|+.++++.++.. .|......+|.+|||+ |..+ +-|+|+
T Consensus 250 ~~~il~~DEidki~~~~~-~~~~D~s~egvq~aLL~~le~~~~~~---~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~ 324 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGE-YSGADVSREGVQRDLLPLVEGSTVST---KHGMVKTDHILFIASGAFQVARPSD-LIPELQ 324 (444)
T ss_dssp HHCEEEEETGGGGSCCSS-CSSSHHHHHHHHHHHHHHHHCCEEEE---TTEEEECTTCEEEEEECCSSCCGGG-SCHHHH
T ss_pred cCCeeeHHHHHHHhhccC-CCCCCchHHHHHHHHHHHhccccccc---ccceecCCcEEEEeccccccCChhh-cchHHh
Confidence 346999999999987643 23445666678889999999654333 2344567889999998 5444 557887
Q ss_pred CCCCceEEEe--CCCHHHHHHHHH
Q 014243 287 RDGRMEKFYW--APTREDRIGVCK 308 (428)
Q Consensus 287 R~gRfd~~i~--~P~~eeR~~Il~ 308 (428)
|||+..+. ..+.++..+|+.
T Consensus 325 --~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 325 --GRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp --TTCCEEEECCCCCHHHHHHHHH
T ss_pred --cccceeeeCCCCCHHHHHHHHH
Confidence 69999877 779999999983
No 166
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.15 E-value=0.0003 Score=66.85 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
.++|.||||+|||++|+.+|++++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58899999999999999999999998877654
No 167
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.14 E-value=0.0021 Score=65.97 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEecc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~ 182 (428)
.|+.+..-++|.|+||+|||++|..+|... |.++++++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 477777889999999999999999888763 556666554
No 168
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00024 Score=64.99 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=26.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|+|.||||+|||++|+.+++++|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999877664
No 169
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.13 E-value=0.00026 Score=64.64 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|+|.||||+|||++|+.+++++|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999877754
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.11 E-value=0.00035 Score=63.45 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
+.+..+.|.||+|+|||+++++++..+|..++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 346789999999999999999999999764443
No 171
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.10 E-value=0.00034 Score=61.00 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=27.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|+|.|+||+|||++|+.+++.+|++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999887753
No 172
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.10 E-value=0.00039 Score=61.30 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
...++|.||||+|||++++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4679999999999999999999999865544
No 173
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.09 E-value=0.0003 Score=64.84 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
+..|+|.|+||+|||++|+.+|+.+|+.++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34689999999999999999999999877664
No 174
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.08 E-value=0.00025 Score=65.35 Aligned_cols=32 Identities=38% Similarity=0.511 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|..|+|.||||+|||++++.+|+.++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999999975543
No 175
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.07 E-value=0.00036 Score=64.71 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=25.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|+|.||||+||+|+|+.||+++|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47889999999999999999999876544
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.00049 Score=61.06 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s 183 (428)
.+..+.|.|++|+|||++++.++..+ |++++.+.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 45678999999999999999999997 9888877644
No 177
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.04 E-value=0.0052 Score=69.31 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.++.+.|+|++|+|||+||+.+++.
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 4678999999999999999998876
No 178
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.04 E-value=0.00046 Score=63.20 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
+..+.|.|||||||||+++.+++.+|++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4579999999999999999999999987654
No 179
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.02 E-value=0.011 Score=62.10 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
.++.|.|+|++|+|||+||+.+++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999997
No 180
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=97.01 E-value=0.0015 Score=52.45 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhH
Q 014243 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~ 336 (428)
+.++|.+|++.|+++. +++.+.|++.|+||+|+||..+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l 43 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSV 43 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHH
Confidence 5678999999998763 5678899999999999999743
No 181
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.98 E-value=0.00036 Score=70.23 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=27.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
..++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 468999999999999999999999988754
No 182
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.98 E-value=0.001 Score=59.27 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=26.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
-|.|.|++||||||+++.+++.+ |++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 47899999999999999999998 99887654
No 183
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.98 E-value=0.00064 Score=64.00 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=43.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccc-------cccCCCCCh-----HHHHHHHHHHHHHHHHhCCce
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE-------LESGNAGEP-----AKLIRQRYREAADIIKKGKMC 214 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~-------L~s~~~Ge~-----~~~Ir~~F~~A~~~i~~~~p~ 214 (428)
..++++||||+|||+++..++..+ |..++.+++.. +.+. .|.. .....+++..+.+.+....+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 578889999999999998877764 55666653222 2222 2211 011123444442222235688
Q ss_pred EEEeccccc
Q 014243 215 CLMINDLDA 223 (428)
Q Consensus 215 ILfIDEiDa 223 (428)
+|+|||+..
T Consensus 92 vViIDEaQ~ 100 (223)
T 2b8t_A 92 VIGIDEVQF 100 (223)
T ss_dssp EEEECSGGG
T ss_pred EEEEecCcc
Confidence 999999954
No 184
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.97 E-value=0.0005 Score=61.83 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh-CCCeEEec
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMS 181 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el-g~~~i~vs 181 (428)
.++.|.|.|+||+|||++++.+++.+ |++++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35679999999999999999999998 57777654
No 185
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.95 E-value=0.0026 Score=63.16 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s 183 (428)
.++.++|.||+|+|||++++.+|++++..++.+..-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 356899999999999999999999999888876543
No 186
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.94 E-value=0.00067 Score=60.16 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=27.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
.|.|.|+||+|||++++.+++.+ |++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88888764
No 187
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.94 E-value=0.00054 Score=62.76 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|+|.|+||+|||++|+.+++.+|+.++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999877664
No 188
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.88 E-value=0.0022 Score=58.07 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L 185 (428)
..+..+.|.||+|||||+++++++..+ |...+.+.+..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456789999999999999999999998 554334444333
No 189
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.87 E-value=0.0007 Score=64.17 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|..+.|.||||||||++++.+|+.+|+.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 46789999999999999999999999977654
No 190
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.87 E-value=0.0006 Score=60.98 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=26.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|.|.|+||+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999986654
No 191
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.87 E-value=0.00065 Score=61.54 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
..+.|.||+||||||+++.++. +|..++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 4688999999999999999988 8887765
No 192
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.86 E-value=0.00041 Score=61.44 Aligned_cols=24 Identities=29% Similarity=0.098 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg 174 (428)
.|+|.|+||+|||++|+.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999876
No 193
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00077 Score=60.41 Aligned_cols=31 Identities=35% Similarity=0.496 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|..|.|.|++|||||++++.+++. |+.++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 4678999999999999999999998 877665
No 194
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.85 E-value=0.0059 Score=59.96 Aligned_cols=71 Identities=17% Similarity=0.330 Sum_probs=44.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccc--------------------ccCCCCChHHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL--------------------ESGNAGEPAKLIRQRYRE 203 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L--------------------~s~~~Ge~~~~Ir~~F~~ 203 (428)
+.|..++|.||+|+|||+++..+|..+ |..+..+..... .....+++.+.+...+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 467889999999999999999999874 444444332211 001122333333333333
Q ss_pred HHHHHHhCCceEEEeccc
Q 014243 204 AADIIKKGKMCCLMINDL 221 (428)
Q Consensus 204 A~~~i~~~~p~ILfIDEi 221 (428)
+ ....+.+++||+.
T Consensus 182 a----~~~~~dvvIiDtp 195 (306)
T 1vma_A 182 A----LARNKDVVIIDTA 195 (306)
T ss_dssp H----HHTTCSEEEEEEC
T ss_pred H----HhcCCCEEEEECC
Confidence 3 4667889999976
No 195
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.85 E-value=0.00091 Score=60.14 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=27.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|.|.|++|+|||++++.+|+.+|++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 789999999999999999999999887763
No 196
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.83 E-value=0.00069 Score=62.78 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=26.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|+|.|+||+|||++|+.+++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998765543
No 197
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.82 E-value=0.00039 Score=62.92 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCe
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINP 177 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~ 177 (428)
.+..|.|.|+||+|||++++.+++.++...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999876543
No 198
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.82 E-value=0.00076 Score=60.69 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
+..|+|.|+||+|||++|+.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5679999999999999999999998874
No 199
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.81 E-value=0.00074 Score=60.98 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=25.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|.|.|++|||||++++.+++ +|+.++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 588999999999999999999 88776664
No 200
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.76 E-value=0.0049 Score=60.34 Aligned_cols=38 Identities=16% Similarity=-0.110 Sum_probs=30.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
.|+.+..-++|.|+||+|||++|..+|... |.++++++
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 477777789999999999999999998764 34555554
No 201
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.75 E-value=0.00047 Score=62.39 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
.|..|+|.|+||+|||++++.+++.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998653
No 202
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.75 E-value=0.0033 Score=58.95 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=27.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEeccc
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s 183 (428)
.++|.||+|+|||.++.+++.+++...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 488999999999999999999987777666544
No 203
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.72 E-value=0.00081 Score=61.07 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=29.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCeEE
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIM 179 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el-g~~~i~ 179 (428)
+.++.+..+.|.|+||+|||++++.+++.+ ++.++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 345567789999999999999999999987 555444
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.71 E-value=0.0017 Score=65.14 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=40.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh----CCCeEEecc-cccc---------cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA-GELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~-s~L~---------s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~I 215 (428)
..+++.||+|+|||++.++++..+ +-.++.+.. .++. ...++.....+...+..| -...|.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~a----L~~~Pdv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSA----LREDPDI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHH----TTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHH----hhhCcCE
Confidence 368999999999999999999875 233333211 1111 011121111122233333 5788999
Q ss_pred EEeccc
Q 014243 216 LMINDL 221 (428)
Q Consensus 216 LfIDEi 221 (428)
|++||+
T Consensus 200 illDEp 205 (356)
T 3jvv_A 200 ILVGEM 205 (356)
T ss_dssp EEESCC
T ss_pred EecCCC
Confidence 999998
No 205
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.70 E-value=0.0041 Score=64.28 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccc-------------------cc-CCCCChHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL-------------------ES-GNAGEPAKLIRQRYREA 204 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L-------------------~s-~~~Ge~~~~Ir~~F~~A 204 (428)
.|..+++.|+||+||||++..+|..+ |..+..+.+... .. .....+...++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998774 666666554322 11 11223445555555555
Q ss_pred HHHHHhCCceEEEeccc
Q 014243 205 ADIIKKGKMCCLMINDL 221 (428)
Q Consensus 205 ~~~i~~~~p~ILfIDEi 221 (428)
+.....++|||..
T Consensus 179 ----~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 ----KSKGVDIIIVDTA 191 (443)
T ss_dssp ----HHTTCSEEEEECC
T ss_pred ----HhCCCCEEEEECC
Confidence 6666789999976
No 206
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.68 E-value=0.0013 Score=60.23 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|..|.|.|++|+|||++++.++. +|..++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 367899999999999999999998 88766653
No 207
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.67 E-value=0.0014 Score=62.79 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+++...++|.||+|+|||++.++++...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3445678999999999999999999874
No 208
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.67 E-value=0.0033 Score=55.71 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCEL 168 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~a 168 (428)
+.+..++|.||+|+|||+|+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3456799999999999999994
No 209
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.67 E-value=0.00053 Score=62.19 Aligned_cols=31 Identities=13% Similarity=-0.066 Sum_probs=23.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH---hCCCeEEe
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK---MGINPIMM 180 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~v 180 (428)
+.++++||||+|||+++..++.. .|..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57889999999999999666654 35555544
No 210
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.66 E-value=0.0031 Score=57.56 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC----CCeEEeccccc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 185 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg----~~~i~vs~s~L 185 (428)
..+..++|.|+||+|||++++.++..++ .+++.+++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4567899999999999999999999764 55777765444
No 211
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.65 E-value=0.0037 Score=59.06 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
...|++.|+||||||+++-.+|..+ |..++.+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3579999999999999999888774 66655433
No 212
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.64 E-value=0.0067 Score=63.07 Aligned_cols=38 Identities=11% Similarity=-0.043 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEecc
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~ 182 (428)
|+.+...++|.|+||+|||++|..+|... |.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 66666789999999999999999998874 456666654
No 213
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.63 E-value=0.0013 Score=61.93 Aligned_cols=40 Identities=28% Similarity=0.595 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCe--------EEecccccc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINP--------IMMSAGELE 186 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~--------i~vs~s~L~ 186 (428)
..|..|.|.|+||+|||++|+.+++.+|+++ +.++..++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3567899999999999999999999999763 345555554
No 214
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.62 E-value=0.0013 Score=60.13 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
|..+.|.|++|||||++++.+++.+|++++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 45789999999999999999999999877663
No 215
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.61 E-value=0.0016 Score=60.67 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
..+..+.|.|++|||||++++.+++.+|++++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 456689999999999999999999999987665
No 216
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.61 E-value=0.0043 Score=61.97 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
.++.|+|.||+|+|||+|+..+|+.++..+|....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 45689999999999999999999999988777543
No 217
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.59 E-value=0.0016 Score=61.66 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
...+.|.||+|||||++++.+|+.+|+.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 4579999999999999999999999987664
No 218
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.59 E-value=0.0079 Score=61.99 Aligned_cols=39 Identities=15% Similarity=-0.118 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecc
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~ 182 (428)
.|+.+..-++|.|+||+|||++|..+|... |.++++++.
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 377777789999999999999999888774 566666654
No 219
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.59 E-value=0.0015 Score=66.70 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L 185 (428)
.|..|+|.|+||+|||++|+.+++.+++.+ ++...+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 467899999999999999999999997654 444443
No 220
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.56 E-value=0.0028 Score=66.75 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC---CeEEecccc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGE 184 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~---~~i~vs~s~ 184 (428)
.|..|+|.|.||+|||++|+.+|+.+++ ....++..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 4678999999999999999999999854 444444433
No 221
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.56 E-value=0.002 Score=57.34 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=28.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC---CCeEEecc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSA 182 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~ 182 (428)
..+..++|.|+||+|||++++.++..++ ..+..++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3467899999999999999999999864 34444443
No 222
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.54 E-value=0.0016 Score=59.64 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
...|.|.|++|||||++++.+++.+|++++...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 357889999999999999999999898877643
No 223
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.53 E-value=0.0015 Score=62.36 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
...|.|.|++|+|||++++.+|..+|+.++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 34699999999999999999999999987774
No 224
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.49 E-value=0.0043 Score=48.73 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014243 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+.++|.+|++.++++. +++++.|++.|+||+|+||..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~ 42 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 42 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 6789999999998763 567888999999999999974
No 225
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.48 E-value=0.0014 Score=62.85 Aligned_cols=30 Identities=33% Similarity=0.303 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh-CCCeE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM-GINPI 178 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el-g~~~i 178 (428)
|..|+|.|+||+|||++|+.+++.+ ++.++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 5679999999999999999999974 65444
No 226
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.47 E-value=0.0018 Score=62.43 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|..|.|.|+||+|||++|+.++ ++|++++..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 46789999999999999999999 688776653
No 227
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.41 E-value=0.0065 Score=55.10 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
...+..+.|.||+|+|||++++.++..+ +..++..+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 3456789999999999999999999875 55555543
No 228
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.41 E-value=0.0019 Score=57.96 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
..+..+.|.||+|+|||++++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456689999999999999999999876
No 229
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.38 E-value=0.003 Score=63.53 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+++...++|.||+|+|||++.++++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3445679999999999999999999875
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.33 E-value=0.002 Score=58.55 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
..++.++|.||||+|||++++.+++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3466799999999999999999999885
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.31 E-value=0.0063 Score=62.70 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~ 182 (428)
.|..+++.||+|+||||++..+|..+ |..+..+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 47889999999999999999998764 666665553
No 232
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.31 E-value=0.0027 Score=62.81 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s 183 (428)
+.|+.++|.||+|+|||+||..+|+.++..++....-
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 3467899999999999999999999998877765443
No 233
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.30 E-value=0.0038 Score=56.88 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
.+.+..+.|.||+|+|||||+++|+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34567899999999999999999999875
No 234
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.30 E-value=0.0022 Score=58.08 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC--CCeEE
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM 179 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg--~~~i~ 179 (428)
+.+..+.|.||+|+||||+++.++..++ +.++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 3566799999999999999999999987 55444
No 235
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.28 E-value=0.018 Score=59.04 Aligned_cols=71 Identities=11% Similarity=0.012 Sum_probs=49.0
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-------------CC
Q 014243 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-------------FS 279 (428)
Q Consensus 213 p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-------------~~ 279 (428)
|.|+||||++.+.. ....+|+..+. ++...+ +|++||. +.
T Consensus 296 ~~VliIDEa~~l~~-------------~a~~aLlk~lE-------------e~~~~~-~il~tn~~~~~i~~~~~~~~~~ 348 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI-------------ECFTYLHRALE-------------SSIAPI-VIFASNRGNCVIRGTEDITSPH 348 (456)
T ss_dssp ECEEEEESGGGCBH-------------HHHHHHHHHTT-------------STTCCE-EEEEECCSEEECBTTSSCEEET
T ss_pred ceEEEEechhhcCH-------------HHHHHHHHHhh-------------ccCCCE-EEEecCCccccccccccccccc
Confidence 46999999998631 22345555555 333444 4444443 77
Q ss_pred CCChhhcCCCCceEEEe-CCCHHHHHHHHHHhcc
Q 014243 280 TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFR 312 (428)
Q Consensus 280 ~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~ 312 (428)
.|+|.++. ||..+.. .|+.++..+|++....
T Consensus 349 ~l~~~i~s--R~~~~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 349 GIPLDLLD--RVMIIRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp TCCHHHHT--TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCChhHHh--hcceeeCCCCCHHHHHHHHHHHHH
Confidence 89999986 8877655 8899999999987764
No 236
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.21 E-value=0.049 Score=57.95 Aligned_cols=71 Identities=10% Similarity=0.134 Sum_probs=44.2
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--CCChhhcCCCCc
Q 014243 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRM 291 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~--~Ld~ALlR~gRf 291 (428)
.+|+|||+..+..... ..+...|..++. . -...+|-+|++|.+|+ .|+..++. -|
T Consensus 345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar---------~---GRa~GIhLIlaTQRPs~d~I~~~Ira--n~ 401 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ---------K---ARAAGIHLILATQRPSVDVITGLIKA--NI 401 (574)
T ss_dssp EEEEESCCTTHHHHTC---------HHHHHHHHHHHH---------H---CTTTTEEEEEEESCCCTTTSCHHHHH--TC
T ss_pred EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH---------H---HhhCCeEEEEEecCcccccccHHHHh--hh
Confidence 5899999987754321 112222322222 1 3357889999999998 78877654 33
Q ss_pred eEEEe--CCCHHHHHHHH
Q 014243 292 EKFYW--APTREDRIGVC 307 (428)
Q Consensus 292 d~~i~--~P~~eeR~~Il 307 (428)
...+- ..+..+...|+
T Consensus 402 ~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 402 PTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp CEEEEECCSCHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHhc
Confidence 33333 77888877776
No 237
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.17 E-value=0.0036 Score=57.43 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=28.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
..|.|.||+|||||++++.+|+.+|++|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 479999999999999999999999999885
No 238
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.17 E-value=0.023 Score=59.47 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHH--HHHh--CCCeEEecc
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELV--FAKM--GINPIMMSA 182 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aI--A~el--g~~~i~vs~ 182 (428)
+++....++|.||+|||||+|++.+ +... +-..+.+++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5666778999999999999999994 4432 334455544
No 239
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.15 E-value=0.0037 Score=55.71 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
..++|.||+|+|||++++.++...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35789999999999999999986543
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.14 E-value=0.003 Score=57.72 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
.+..+.|.||+|+|||++++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4567999999999999999999998753
No 241
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.14 E-value=0.0052 Score=61.28 Aligned_cols=38 Identities=11% Similarity=-0.054 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecc
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~ 182 (428)
|+.+..-++|.|+||+|||++|..+|.. .|.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 6777778999999999999999998877 3566655543
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.13 E-value=0.0035 Score=56.19 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
....+.|.||+|+|||||+++++.... .+.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~ 38 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISI 38 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEec
Confidence 356789999999999999999999863 344443
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.13 E-value=0.0036 Score=55.85 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
.+.+.|.||+|+|||+|+++++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999999763
No 244
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.12 E-value=0.0072 Score=59.85 Aligned_cols=39 Identities=36% Similarity=0.520 Sum_probs=31.4
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 136 i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+...++.....+.|..+.|.||+||||||++++++..++
T Consensus 79 ~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 79 ATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334455555556788999999999999999999999875
No 245
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.10 E-value=0.0029 Score=59.82 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=26.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
-+.|.||||+|||++|+.+++.+|+..+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 477899999999999999999999876653
No 246
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.99 E-value=0.0042 Score=62.09 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
++.|+|.||+|+|||++|+.+|..++..++.+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 457999999999999999999999997666544
No 247
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.98 E-value=0.0089 Score=58.26 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=28.9
Q ss_pred HHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 138 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 138 K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+.++.......+..+.|.||+|+|||||+++++..++
T Consensus 69 ~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 69 EQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred HHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4444433445667899999999999999999999876
No 248
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.93 E-value=0.017 Score=60.52 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~ 182 (428)
..|..|+|.|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 347789999999999999999999765 666666654
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.90 E-value=0.0041 Score=55.67 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
|+.+.|.||+|+|||+++++++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998764
No 250
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.87 E-value=0.016 Score=62.44 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L 185 (428)
.+..|+|.|+||+|||++|+++++.+ |.+++.+.+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 46789999999999999999999998 999988865444
No 251
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.85 E-value=0.0056 Score=57.33 Aligned_cols=32 Identities=34% Similarity=0.691 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
.++.+..+.|.||+|+||||+++.++..+|..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34456679999999999999999999988753
No 252
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.85 E-value=0.0049 Score=61.08 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
++.++|.||+|+|||+||..+|+.++..++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 4578899999999999999999999876665443
No 253
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.79 E-value=0.0082 Score=59.39 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=43.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC--CeEEecccc-cc-----cC--CCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LE-----SG--NAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~s~-L~-----s~--~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfI 218 (428)
...++|.||+|+|||+|.++++..... ..+.+.... +. .. ++.......+.....| -...|.+|++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~a----L~~~p~ilil 246 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSC----LRMRPDRIIL 246 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHH----TTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHH----hhhCCCEEEE
Confidence 346999999999999999999998542 344443321 11 00 1100111223344444 5678999999
Q ss_pred ccccc
Q 014243 219 NDLDA 223 (428)
Q Consensus 219 DEiDa 223 (428)
||.-+
T Consensus 247 dE~~~ 251 (330)
T 2pt7_A 247 GELRS 251 (330)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99843
No 254
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.79 E-value=0.013 Score=57.02 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
..+.|..|.|.||+|+|||++++.++..++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345678999999999999999999999875
No 255
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.76 E-value=0.035 Score=64.60 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=25.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
.+++..-+.|.||+|+|||+|++++...+..
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 3445567999999999999999999988543
No 256
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.74 E-value=0.014 Score=60.77 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.-++|+||||+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 358899999999999999887764
No 257
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.68 E-value=0.0069 Score=56.73 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
...|.|.|++|||||++++.+|+.+|++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4589999999999999999999999998765
No 258
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.64 E-value=0.0082 Score=61.36 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
+++.|+|.||+|+|||+||..+|+.++..++...
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 3567889999999999999999999987766543
No 259
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.62 E-value=0.0086 Score=55.93 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC--CCeEE
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM 179 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg--~~~i~ 179 (428)
..+.-|.|.||||+|||++++.+++.++ ..++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 4567788999999999999999999986 45443
No 260
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.55 E-value=0.0081 Score=54.64 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
.+.....+.|.||+|+|||+|+++|+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 344556799999999999999999999874
No 261
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.52 E-value=0.022 Score=58.14 Aligned_cols=76 Identities=11% Similarity=0.129 Sum_probs=44.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEeccc---------------ccccCCCCCh-HHHHHH---HHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAG---------------ELESGNAGEP-AKLIRQ---RYREA 204 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s---------------~L~s~~~Ge~-~~~Ir~---~F~~A 204 (428)
..-++|.||||||||+|++.|++.. ++..+++-.+ .+......++ ...++- ....|
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~A 253 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA 253 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4569999999999999999998864 3334433211 1111222232 222221 12233
Q ss_pred HHHHHhCCceEEEecccccc
Q 014243 205 ADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 205 ~~~i~~~~p~ILfIDEiDa~ 224 (428)
.-....++..+||+|++...
T Consensus 254 Eyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 254 KRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHTSCEEEEEEECHHHH
T ss_pred HHHHhcCCCEEEEEeCchHH
Confidence 22334788899999998655
No 262
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.51 E-value=0.0041 Score=56.11 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
.|.|.|++|+||||+++.+++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999753
No 263
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.48 E-value=0.0065 Score=57.91 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
|++....++|+||||+|||+|+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56666789999999999999999998753
No 264
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.44 E-value=0.0074 Score=54.81 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+++.+.|.||+|+|||+|++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345789999999999999999998763
No 265
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.41 E-value=0.0074 Score=56.07 Aligned_cols=32 Identities=25% Similarity=0.096 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
.++++|.||+|+|||+||..+++..+ .++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 57899999999999999999998865 555433
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.40 E-value=0.0091 Score=57.22 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=29.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEec
Q 014243 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMS 181 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs 181 (428)
.++++...++|.||||+|||+|++.+|..+ |..++.++
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 466777789999999999999999998874 54454443
No 267
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.33 E-value=0.0087 Score=55.25 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
++....+.|.||+|+|||+|+++++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445678999999999999999999977
No 268
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.33 E-value=0.026 Score=59.68 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=39.1
Q ss_pred chhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---CCeEEeccccc
Q 014243 125 APAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (428)
Q Consensus 125 ~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~s~L 185 (428)
|+.|.-..+..+.+.+.... .+.+..|+|.|+||+|||++|+.+++.++ .++..++...+
T Consensus 349 p~~~~r~eV~~~lr~~~~~~-~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 349 PEWFTRPEVAEILAETYVPK-HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CTTTSCHHHHHHHHHHSCCG-GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred CccccchhHHHHHHHhhccc-cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 34443233445555554221 23467899999999999999999999864 45666665443
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.30 E-value=0.016 Score=52.73 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCe
Q 014243 152 LGIWGGKGQGKSFQCELVFAKMGINP 177 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~ 177 (428)
|.|.||+|+|||+|++.+.++..-.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 78999999999999999988864433
No 270
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.30 E-value=0.018 Score=59.21 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el 173 (428)
.++|.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999885
No 271
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.28 E-value=0.023 Score=58.59 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
..|..|+|.|.||+|||++++.+++.++..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 346789999999999999999999997543
No 272
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.27 E-value=0.0068 Score=58.82 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC---CCeEEeccccc
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~s~L 185 (428)
+..|.|.||+|+|||++|+.+++.++ ..+..++...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 55799999999999999999999876 44445554443
No 273
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.26 E-value=0.013 Score=51.78 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+++...+.|.||.|+|||+|.++|+..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34455679999999999999999999987
No 274
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.23 E-value=0.017 Score=53.16 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
.++.+.|.||+|+|||+|+++++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356788999999999999999998865
No 275
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.23 E-value=0.013 Score=61.52 Aligned_cols=52 Identities=12% Similarity=-0.058 Sum_probs=38.2
Q ss_pred CCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 123 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 123 ~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
.+|+.|+-..+..+.+.+.... .+.+..|.|.|.+|||||++++++|+.++.
T Consensus 370 ~~P~~f~rpeV~~vLr~~~~~~-~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 370 EIPEWFSYPEVVKILRESNPPR-PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCCTTTSCHHHHHHHHHHSCCG-GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCccccChhhHHHHHHhcccc-cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4556666666666666655321 234467899999999999999999999985
No 276
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.20 E-value=0.049 Score=53.86 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+.|..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999874
No 277
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.20 E-value=0.053 Score=55.72 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEeccc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 183 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~s 183 (428)
+.|+.+++.|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 457899999999999999999998774 6777766654
No 278
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.19 E-value=0.082 Score=59.29 Aligned_cols=25 Identities=24% Similarity=0.081 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
.....++|.||.|+|||++.+.|+.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3346799999999999999999874
No 279
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.17 E-value=0.013 Score=54.41 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh-CC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM-GI 175 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el-g~ 175 (428)
|+.|.|.|++|+|||++++.+++.+ +.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5679999999999999999999998 44
No 280
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.14 E-value=0.06 Score=52.22 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIM 179 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~ 179 (428)
.+..+.+.|++|+|||+++..+|..+ +..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l 131 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 56788899999999999999999874 444444
No 281
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.13 E-value=0.035 Score=59.53 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=23.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH---hCCCeEEeccc
Q 014243 151 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 183 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s 183 (428)
-.|++||||||||+++-.+..+ .+..++.++.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 4789999999999765544444 35566666655
No 282
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.11 E-value=0.014 Score=57.33 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
++.+..+.|.||+|+|||||+++|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 56678899999999999999999999863
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.09 E-value=0.049 Score=53.01 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecc
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~ 182 (428)
+..+++.|++|+|||+++..+|..+ |..+..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 6788999999999999999999775 555555443
No 284
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.09 E-value=0.049 Score=57.95 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC----CCeEEeccccc
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 185 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg----~~~i~vs~s~L 185 (428)
..+..|+|.|+||+|||++|+++++.++ .+++.++...+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 4467899999999999999999999976 67777765544
No 285
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=95.08 E-value=0.0054 Score=48.26 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=19.2
Q ss_pred HHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHh
Q 014243 301 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 301 eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~ 335 (428)
++|.+|++.++++ .+++++.|++.|+||||+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~ 39 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 39 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 4789999988865 3677888999999999999974
No 286
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.96 E-value=0.0076 Score=55.65 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=17.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHH-HHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVF-AKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA-~el 173 (428)
++....+.|.||+|+|||++++.++ ...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3445679999999999999999999 765
No 287
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.95 E-value=0.0065 Score=57.39 Aligned_cols=31 Identities=16% Similarity=0.035 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh-CCCe
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM-GINP 177 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el-g~~~ 177 (428)
+.+.-|.|.|++|+|||++++.+++.+ +..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456789999999999999999999998 5433
No 288
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.95 E-value=0.034 Score=54.27 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
++.+..++|.||+|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999885
No 289
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.94 E-value=0.036 Score=51.08 Aligned_cols=36 Identities=19% Similarity=-0.030 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCchHH-HHHHHHHHH--hCCCeEEeccc
Q 014243 148 VPLILGIWGGKGQGKS-FQCELVFAK--MGINPIMMSAG 183 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT-~LA~aIA~e--lg~~~i~vs~s 183 (428)
..+..++|||.|+||| .|.+++.+. .+..++.+++.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 3468899999999999 899998776 46677777643
No 290
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.93 E-value=0.12 Score=58.15 Aligned_cols=22 Identities=23% Similarity=0.001 Sum_probs=19.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~ 171 (428)
..++|.||.|+|||++.+.|+.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.93 E-value=0.017 Score=56.66 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+++...+.|.||+|+|||+|+++|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45566789999999999999999999987
No 292
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.88 E-value=0.15 Score=53.47 Aligned_cols=40 Identities=5% Similarity=0.160 Sum_probs=28.3
Q ss_pred CCceEEEEeCCCC--CCChhhcCCCCce-EEEe-CCCHHHHHHHHH
Q 014243 267 PRVPIIVTGNDFS--TLYAPLIRDGRME-KFYW-APTREDRIGVCK 308 (428)
Q Consensus 267 ~~V~VI~TTN~~~--~Ld~ALlR~gRfd-~~i~-~P~~eeR~~Il~ 308 (428)
.++.+|++|.+|+ .|+..++. -+. ++.. ..+..+...|+.
T Consensus 331 ~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 331 AGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp GTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 4789999999998 57765543 343 3444 888888887763
No 293
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.88 E-value=0.086 Score=52.25 Aligned_cols=32 Identities=28% Similarity=0.256 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIM 179 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~ 179 (428)
.+..|.|.|+||+|||+++..++..+ |..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~v 112 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAV 112 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 45678999999999999999998875 444443
No 294
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.75 E-value=0.044 Score=51.42 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh-------CCCeEEec
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM-------GINPIMMS 181 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el-------g~~~i~vs 181 (428)
..+-|.|.||+|+|||++++.+++.+ |..++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 35678899999999999999999986 66655443
No 295
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.72 E-value=0.13 Score=56.87 Aligned_cols=24 Identities=25% Similarity=0.018 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...++|.||.|+|||++.++|+.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 357899999999999999999865
No 296
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.66 E-value=0.016 Score=60.87 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=41.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC--CeEEecccc-cccC-----------CCCChHHHHHHHHHHHHHHHHhCCce
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LESG-----------NAGEPAKLIRQRYREAADIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~s~-L~s~-----------~~Ge~~~~Ir~~F~~A~~~i~~~~p~ 214 (428)
..+++|.||+|+||||+.++++..+.- ..+.+.... +.-. ..+...-.+....+.+ -...|.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~----LR~~PD 335 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAA----LRQRPD 335 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTT----GGGCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHh----hccCCC
Confidence 457999999999999999999988642 344443322 2100 0011111122222322 356899
Q ss_pred EEEecccc
Q 014243 215 CLMINDLD 222 (428)
Q Consensus 215 ILfIDEiD 222 (428)
++++.|+-
T Consensus 336 ~iivgEir 343 (511)
T 2oap_1 336 YIIVGEVR 343 (511)
T ss_dssp EEEESCCC
T ss_pred eEEeCCcC
Confidence 99999983
No 297
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.64 E-value=0.018 Score=52.30 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=28.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEecccc
Q 014243 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~ 184 (428)
+|++|++|+|||++|+.++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88887877654
No 298
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.62 E-value=0.021 Score=53.08 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+....+.|.||+|+|||+|.++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456789999999999999999999864
No 299
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.61 E-value=0.046 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|+|.|.||+|||+|..++...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4567999999999999999999765
No 300
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.60 E-value=0.019 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+.|.||+|+|||+|.+.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999986
No 301
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.48 E-value=0.032 Score=63.54 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.+.|+||+|+|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 568999999999999999999864
No 302
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.46 E-value=0.052 Score=54.42 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
++.+..++|.||.|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4467789999999999999999999985
No 303
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.46 E-value=0.036 Score=56.70 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
..++|.||+|+||||+.++++..+..
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 45899999999999999999998743
No 304
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.46 E-value=0.028 Score=55.01 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+..+.|.||+||||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999875
No 305
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.44 E-value=0.028 Score=52.33 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
..|.|+|..|||||++++.+++ +|++++...
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4789999999999999999987 998877643
No 306
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.31 E-value=0.029 Score=50.42 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
....+.|.||+|+|||++++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34578999999999999999998874
No 307
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.29 E-value=0.031 Score=50.81 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
-+|+||.|++|+|||++|.++... |..++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 369999999999999999999874 554443
No 308
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.19 E-value=0.07 Score=55.88 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+..+..++|.||+|+|||||++.||..+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34567789999999999999999999875
No 309
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.19 E-value=0.03 Score=49.26 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
...+|+||.|+|||++.+||+-.++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36789999999999999999987753
No 310
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.18 E-value=0.025 Score=60.11 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecc
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~ 182 (428)
...++|.||||||||+++.+++.. .|..++.+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 457899999999999999998875 4666665543
No 311
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.13 E-value=0.051 Score=50.55 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.++-|.|.|++|+|||++++.+++.++.+...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~ 35 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL 35 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceE
Confidence 35678899999999999999999999874433
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.98 E-value=0.036 Score=49.82 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
.+.+.|.|++|+|||+++..++..+ |..+..++
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4578999999999999999999874 45544444
No 313
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.91 E-value=0.029 Score=52.96 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
.++. ..+.|.||.|+|||||.++|+....
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455 7899999999999999999998753
No 314
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.88 E-value=0.036 Score=53.94 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEecc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~ 182 (428)
.+..++|.||+|+|||+++..+|..+ |..+..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46789999999999999999998764 545555544
No 315
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.81 E-value=0.027 Score=52.85 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+++...+.|.||.|+|||+|.++|+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445679999999999999999998864
No 316
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.80 E-value=0.041 Score=50.93 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
++-|.|.|++|+|||++++.+++.+ |.+++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4578899999999999999999986 45555443
No 317
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.79 E-value=0.11 Score=53.48 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...+..++.|+||||||++...+++.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc
Confidence 44578899999999999999887753
No 318
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.74 E-value=0.029 Score=52.63 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
.....+.|.||.|+|||||.++|+....
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3445789999999999999999987653
No 319
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.69 E-value=0.13 Score=56.45 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..++|.||.|+|||++.+.|+.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46889999999999999999864
No 320
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.65 E-value=0.024 Score=52.76 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+....+.|.||.|+|||||.++|+.-..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445788999999999999999987643
No 321
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.59 E-value=0.17 Score=51.94 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
.|..+++.||+|+|||+++..+|..+ |..+..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 57789999999999999999999875 44444443
No 322
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.55 E-value=0.032 Score=53.27 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+....+.|.||.|+|||||.++|+.-..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4445789999999999999999988653
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.51 E-value=0.035 Score=49.68 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+.+.|.||+|+|||+|++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999998853
No 324
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.48 E-value=0.036 Score=59.32 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=23.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh----CCCeEEeccc
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 183 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~s 183 (428)
..+++||||||||+++..++..+ +..++.+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 57899999999999888776653 3344444443
No 325
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.45 E-value=0.051 Score=53.52 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=27.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
.+.+..+++.||+|+|||+++..+|..+ |..+..+.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3567889999999999999999998864 44444433
No 326
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.43 E-value=0.047 Score=51.49 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.++-|.|.|++|+|||++++.+++.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999885
No 327
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.40 E-value=0.13 Score=48.48 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999765
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.38 E-value=0.038 Score=55.49 Aligned_cols=27 Identities=26% Similarity=0.129 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||+|||||||.++||...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 334578999999999999999999874
No 329
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.38 E-value=0.035 Score=52.18 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+++...+.|.||.|+|||||.++|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445679999999999999999999864
No 330
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.37 E-value=0.042 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
++....+.|.||.|+|||||.++|+..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344557999999999999999999985
No 331
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.29 E-value=0.04 Score=55.02 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||+|||||||.++||.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344578899999999999999999874
No 332
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.28 E-value=0.034 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...+.|.||.|+|||||.++|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999975
No 333
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.24 E-value=0.039 Score=58.46 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+..+..+.|.|++||||||++++||..++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34556799999999999999999999975
No 334
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.21 E-value=0.039 Score=52.56 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
++....+.|.||.|+|||+|.++|+...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3445679999999999999999998764
No 335
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.19 E-value=0.048 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-++|.|++|+|||+|.++++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999986
No 336
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.19 E-value=0.039 Score=52.82 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
++....+.|.||.|+|||||.++|+....
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34455789999999999999999988653
No 337
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.17 E-value=0.056 Score=53.64 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
..-+.|.||+|+|||||+++|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5678999999999999999999987643
No 338
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.17 E-value=0.045 Score=54.88 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||+|||||||.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344578899999999999999999874
No 339
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.16 E-value=0.034 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||.|+|||||.++|+...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999998764
No 340
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.16 E-value=0.041 Score=52.04 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+....+.|.||.|+|||||.++|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999999974
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.16 E-value=0.04 Score=52.85 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
++....+.|.||.|+|||+|.++|+....
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34455799999999999999999998753
No 342
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.15 E-value=0.046 Score=50.61 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
-.|++.|+|+|.||+||+++|+.+.+.+|.
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 346789999999999999999999887764
No 343
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.14 E-value=0.046 Score=54.92 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||+|||||||.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344578899999999999999999874
No 344
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.10 E-value=0.046 Score=55.30 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||+|||||||.++||.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 344578999999999999999999874
No 345
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.09 E-value=0.064 Score=48.19 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
..-|+|.|++|+|||+|..+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999864
No 346
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.07 E-value=0.066 Score=50.12 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC----CeEE
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGI----NPIM 179 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~----~~i~ 179 (428)
.++-|.|.|++|+|||++++.+++.++. .++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 4677889999999999999999998654 5555
No 347
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.05 E-value=0.048 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.-++|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999999864
No 348
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.03 E-value=0.037 Score=52.01 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
....+.|.||.|+|||||.++|+....
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345789999999999999999988643
No 349
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.02 E-value=0.049 Score=54.92 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||+|||||||.++||.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344578899999999999999999874
No 350
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.02 E-value=0.037 Score=52.33 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+....+.|.||.|+|||||.++|+....
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445789999999999999999988753
No 351
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.02 E-value=0.041 Score=55.04 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||+|||||||.++||.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578899999999999999999864
No 352
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.98 E-value=0.038 Score=51.56 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||.|+|||||.++|+...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999999875
No 353
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.97 E-value=0.057 Score=45.73 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|++.|++|+|||+|..++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999875
No 354
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.92 E-value=0.058 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 014243 151 ILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e 172 (428)
-+++.|++|+|||+|...++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 355
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.88 E-value=0.047 Score=52.15 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||.|+|||||.++|+.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578999999999999999998864
No 356
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.87 E-value=0.047 Score=52.03 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+.....+.|.||.|+|||||.++|+...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444578999999999999999998864
No 357
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.87 E-value=0.045 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||+|||||||.++||.-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334578899999999999999999874
No 358
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.86 E-value=0.073 Score=46.63 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
..+.-|++.|++|+|||+|..+++...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998763
No 359
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.83 E-value=0.04 Score=53.14 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||.|+|||||.++|+...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344578999999999999999998864
No 360
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.82 E-value=0.036 Score=51.46 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
....+.|.||.|+|||+|.++|+...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468899999999999999998864
No 361
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.78 E-value=0.059 Score=57.56 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+.+++.||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3579999999999999988776553
No 362
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.74 E-value=0.048 Score=54.91 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
....+.|.||+|||||||.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34578899999999999999999874
No 363
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.67 E-value=0.043 Score=52.53 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||.|+|||||.++|+...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344578999999999999999999864
No 364
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.64 E-value=0.25 Score=57.49 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+++..-+.|.||+|+|||+|++++..-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4455678999999999999999998874
No 365
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.64 E-value=0.044 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||.|+|||+|.++|+...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578999999999999999998765
No 366
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.62 E-value=0.3 Score=48.01 Aligned_cols=27 Identities=33% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.....+.|.|+||+|||+++.+++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456688899999999999999998764
No 367
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.60 E-value=0.064 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999876
No 368
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.60 E-value=0.32 Score=49.61 Aligned_cols=24 Identities=13% Similarity=-0.101 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.-++|.||||||||+|+..||+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHH
Confidence 358899999999999999998863
No 369
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.55 E-value=0.046 Score=52.75 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||.|+|||||.++|+...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578999999999999999999875
No 370
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.54 E-value=0.055 Score=56.57 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
++.+...++|.||||+|||+|++.++... |-..+++.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 66666789999999999999999998764 33444443
No 371
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.53 E-value=0.047 Score=51.84 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||.|+|||+|.++|+...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999999874
No 372
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.52 E-value=0.047 Score=56.08 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecc
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~ 182 (428)
.|..+++.|+||+|||+++..+|..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 45789999999999999999999875 455666554
No 373
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.50 E-value=0.077 Score=49.00 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.+..+.|.||.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567899999999999999999987
No 374
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.50 E-value=0.072 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|++.|+||+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998865
No 375
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.48 E-value=0.58 Score=53.04 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVF 170 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA 170 (428)
...++|.||.|+|||++.+.|+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4689999999999999999984
No 376
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.47 E-value=0.079 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+-|.|.|++|+|||++++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999986
No 377
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.47 E-value=0.073 Score=44.82 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|++|+|||+|..++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 378
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.44 E-value=0.095 Score=44.54 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|++.|++|+|||+|..++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999764
No 379
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.40 E-value=0.063 Score=54.45 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
++....+.|.||+|||||+|.++|+..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 344557999999999999999999974
No 380
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.38 E-value=0.069 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+.|.||+|+|||||.++++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999874
No 381
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.37 E-value=0.076 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999876
No 382
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.29 E-value=0.059 Score=47.30 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 014243 151 ILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~ 171 (428)
-++|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999986
No 383
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.28 E-value=0.15 Score=47.18 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh--CCCeEEec
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 181 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el--g~~~i~vs 181 (428)
..+..+++.|.+|+|||+++..+|..+ |..+..++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 345688999999999999999999776 55554444
No 384
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.21 E-value=0.076 Score=45.73 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-+.|.|+||+|||+|.++++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 385
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.20 E-value=0.08 Score=45.40 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|++.|++|+|||+|...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999875
No 386
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.19 E-value=0.081 Score=44.83 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
..-|++.|++|+|||+|.+++....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998763
No 387
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.17 E-value=0.096 Score=51.72 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+.....+.|.||||+|||+|.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4456689999999999999999999764
No 388
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.17 E-value=0.29 Score=45.49 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|+|.|+||+|||+|...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999865
No 389
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.16 E-value=0.081 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|++|+|||+|...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 390
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.16 E-value=0.069 Score=59.01 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el 173 (428)
..+++||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999888777653
No 391
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.12 E-value=0.1 Score=57.37 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..+++.||+|+|||++...++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999977776554
No 392
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.12 E-value=0.083 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|+|.|+||+|||+|.+++...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998754
No 393
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.10 E-value=0.08 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 394
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.08 E-value=0.084 Score=44.84 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|++|+|||+|..++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999876
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.08 E-value=0.095 Score=47.21 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
...++|.|++|+|||+|+..++..+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 457889999999999999999988643
No 396
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.07 E-value=0.25 Score=47.18 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|.|.|+||+|||+|..++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999864
No 397
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.02 E-value=0.088 Score=45.60 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|+|.|++|+|||+|..++...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999874
No 398
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.99 E-value=0.089 Score=44.46 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|++|+|||+|..++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999874
No 399
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.99 E-value=0.24 Score=46.80 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|+|.|+||+|||+|..++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999764
No 400
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.99 E-value=0.11 Score=44.57 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|+|.|++|+|||+|..++...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 401
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.95 E-value=0.16 Score=46.52 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh--CCCeEEec
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 181 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el--g~~~i~vs 181 (428)
+-|.|-|+.|+||||+++.+++.+ |.+++.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 457788999999999999999987 55555543
No 402
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.93 E-value=0.097 Score=44.25 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 014243 151 ILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e 172 (428)
-|++.|++|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999875
No 403
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.88 E-value=0.11 Score=45.13 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|++.|++|+|||+|..++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999876
No 404
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.86 E-value=0.07 Score=51.82 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
++....+.|.||.|+|||+|.++|+...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444578999999999999999999874
No 405
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.85 E-value=0.095 Score=44.25 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|++.|++|+|||+|.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 406
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.79 E-value=0.11 Score=45.81 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...-|+|.|++|+|||+|...+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999876
No 407
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.78 E-value=0.091 Score=45.92 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=24.0
Q ss_pred hhCCCCCCCcEEEEEcCCCchHHHHHHHHHH
Q 014243 141 MSLPNIKVPLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 141 l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
+...+.+.+.-|++.|++|+|||+|..++..
T Consensus 14 l~~f~~~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 14 LGLLPADRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp HHTSCTTSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred hhhccCCCceEEEEECCCCCCHHHHHHHHHc
Confidence 3344434567899999999999999998853
No 408
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.78 E-value=0.091 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 409
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.77 E-value=0.59 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 014243 151 ILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e 172 (428)
-|+|.|.||+|||+|..++...
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999998654
No 410
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.76 E-value=0.073 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
...+.|.||.|+|||||.++|+...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999875
No 411
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.75 E-value=0.07 Score=50.56 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=24.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCe
Q 014243 151 ILGIWGGKGQGKSFQCELVFAKMGINP 177 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~ 177 (428)
.|.|+|++|||||++|+.+...+|++.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 588999999999999999999888664
No 412
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.75 E-value=0.092 Score=44.63 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 014243 151 ILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~ 171 (428)
-|+|.|+||+|||+|...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999864
No 413
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.68 E-value=0.33 Score=56.32 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--eEEecccccccC-----------------------------------
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESG----------------------------------- 188 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~--~i~vs~s~L~s~----------------------------------- 188 (428)
+++...+.|.||+|+|||+|+++++...... -+.+.+.++...
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~ 492 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVT 492 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCC
Q ss_pred --------------------------CCCC------hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccch
Q 014243 189 --------------------------NAGE------PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTV 236 (428)
Q Consensus 189 --------------------------~~Ge------~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~ 236 (428)
.+|+ ..+.-|-...+| -..+|.||++||. ...-+..
T Consensus 493 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARa----l~~~p~iliLDEp--------ts~LD~~ 560 (1284)
T 3g5u_A 493 MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA----LVRNPKILLLDEA--------TSALDTE 560 (1284)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHH----HHHCCSEEEEEST--------TCSSCHH
T ss_pred HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHH----HhcCCCEEEEECC--------CCCCCHH
Q ss_pred hhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 014243 237 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (428)
Q Consensus 237 ~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A 284 (428)
..+.+...+..+.. +. -+|+.|.+.+.+..+
T Consensus 561 ~~~~i~~~l~~~~~--------~~---------t~i~itH~l~~i~~~ 591 (1284)
T 3g5u_A 561 SEAVVQAALDKARE--------GR---------TTIVIAHRLSTVRNA 591 (1284)
T ss_dssp HHHHHHHHHHHHHT--------TS---------EEEEECSCHHHHTTC
T ss_pred HHHHHHHHHHHHcC--------CC---------EEEEEecCHHHHHcC
No 414
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.67 E-value=0.095 Score=44.81 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|++.|++|+|||+|..++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999865
No 415
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.61 E-value=0.1 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|++.|++|+|||+|.+.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999876
No 416
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.60 E-value=0.097 Score=45.52 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-++|.|++|+|||+|.++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 417
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.58 E-value=0.087 Score=44.63 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 014243 151 ILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~ 171 (428)
-|+|.|+||+|||+|.+++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 588999999999999998864
No 418
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.56 E-value=0.077 Score=51.97 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+++...+.|.||.|+|||+|+++|+...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3455679999999999999999999864
No 419
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.52 E-value=0.45 Score=45.19 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|+|.|.||+|||+|..++...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999765
No 420
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.50 E-value=0.053 Score=48.35 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+....-+.|.|++|+|||+|.++++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344557999999999999999988754
No 421
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.49 E-value=0.098 Score=44.86 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|+||+|||+|...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998754
No 422
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.49 E-value=0.11 Score=44.79 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|..++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 457999999999999999999875
No 423
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.48 E-value=0.32 Score=45.90 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 014243 151 ILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e 172 (428)
-|.|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4788999999999999999765
No 424
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.48 E-value=0.06 Score=53.69 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
...++|.||+|+|||+|+++++....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34799999999999999999999854
No 425
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.46 E-value=0.11 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
|...+|+||.|+|||++..||+-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998755
No 426
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.41 E-value=0.13 Score=46.41 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+.-++|.|++|+|||+|+..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45677789999999999999998853
No 427
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.40 E-value=0.11 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|++|+|||+|+..++..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 357899999999999999999876
No 428
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.37 E-value=0.11 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|++|+|||+|..++...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999875
No 429
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.35 E-value=0.1 Score=54.06 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
....++|.||.|+|||+|+++|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34568999999999999999999874
No 430
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.33 E-value=0.098 Score=57.80 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=23.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH----hCCCeEEeccc
Q 014243 151 ILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAG 183 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e----lg~~~i~vs~s 183 (428)
.++++||||||||+++..+... .+..++.+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 5789999999999987766554 24555555544
No 431
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.29 E-value=0.11 Score=45.42 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...-|++.|++|+|||+|.+.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999875
No 432
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.28 E-value=0.11 Score=45.43 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...-|+|.|++|+|||+|..++...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999875
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.27 E-value=0.17 Score=51.95 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
+.....+.|.||+|||||+|.+.|++.....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3344578999999999999999999997654
No 434
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.26 E-value=0.11 Score=44.49 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|++|+|||+|..++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999876
No 435
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.26 E-value=0.11 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|++|+|||+|..++...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999875
No 436
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.25 E-value=0.1 Score=44.68 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|++.|++|+|||+|..++...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998654
No 437
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.25 E-value=0.11 Score=52.37 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+....+.|.||+|+|||||.++|+.-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344578999999999999999999864
No 438
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.24 E-value=0.11 Score=44.98 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|.+++...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999875
No 439
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.22 E-value=0.29 Score=51.23 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=23.9
Q ss_pred EEEEEcCCCchHHHH-HHHHHHHhCCCeE
Q 014243 151 ILGIWGGKGQGKSFQ-CELVFAKMGINPI 178 (428)
Q Consensus 151 glLL~GpPGtGKT~L-A~aIA~elg~~~i 178 (428)
-++|.|++|||||.| ...|++..+..++
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~~~dv~ 205 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQKGQGVY 205 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTTTTTEE
T ss_pred EEEEEcCCCCCccHHHHHHHHHhhcCCcE
Confidence 488999999999999 5799999877654
No 440
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.22 E-value=0.31 Score=50.94 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.9
Q ss_pred EEEEEcCCCchHHHH-HHHHHHHhCCCeE
Q 014243 151 ILGIWGGKGQGKSFQ-CELVFAKMGINPI 178 (428)
Q Consensus 151 glLL~GpPGtGKT~L-A~aIA~elg~~~i 178 (428)
-++|.|++|||||.| ...|++..+..++
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 192 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDVI 192 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSEE
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCcE
Confidence 478999999999999 5799999877654
No 441
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.19 E-value=0.15 Score=50.64 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
.-..+.|.||+|+|||+|.+.|++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34578999999999999999999997654
No 442
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.17 E-value=0.2 Score=45.49 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=26.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCeEEeccc
Q 014243 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s 183 (428)
|.|-|+-|+||||+++.+++.+ |.+++.+..+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 5688999999999999999885 7777765533
No 443
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.08 E-value=0.12 Score=45.00 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
..-|+|.|+||+|||+|.+.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999999887753
No 444
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.08 E-value=0.15 Score=43.80 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|++|+|||+|..++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999865
No 445
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.04 E-value=0.13 Score=44.56 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|..++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999865
No 446
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.96 E-value=0.13 Score=44.32 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|++.|++|+|||+|...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 447
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.95 E-value=0.13 Score=44.74 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-++|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999875
No 448
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.95 E-value=0.13 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|+|.|++|+|||+|..++...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999999875
No 449
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.87 E-value=0.13 Score=44.86 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|+|.|++|+|||+|..++...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999999875
No 450
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.80 E-value=0.15 Score=44.65 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|+|.|++|+|||+|..++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999764
No 451
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.78 E-value=0.14 Score=44.86 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|..++...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999876
No 452
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.72 E-value=0.12 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 014243 151 ILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e 172 (428)
-|++.|++|+|||+|..++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999865
No 453
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.69 E-value=0.12 Score=44.47 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999875
No 454
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.68 E-value=0.16 Score=50.10 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i 178 (428)
.+|+||.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 469999999999999999999775 55444
No 455
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.67 E-value=0.16 Score=43.79 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
+.+.-|++.|++|+|||+|...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998864
No 456
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.63 E-value=0.14 Score=44.92 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
..-|+|.|++|+|||+|...+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4568999999999999999998864
No 457
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.61 E-value=0.11 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|+|.|++|+|||+|..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999876
No 458
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.60 E-value=0.15 Score=45.09 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|++.|+||+|||+|.+.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 459
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.58 E-value=0.15 Score=44.44 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|+|.|++|+|||+|..++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999876
No 460
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.55 E-value=0.15 Score=50.23 Aligned_cols=30 Identities=17% Similarity=-0.061 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.+|+||.|++|+|||++|..+.. .|..++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 46999999999999999988754 5665544
No 461
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=90.52 E-value=0.23 Score=49.75 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=43.9
Q ss_pred ccccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCC
Q 014243 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (428)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~ 189 (428)
.+.|.||.++++ .--....+..+..++...+. |. .-.|+-||..|+|||+.. .|-. -....
T Consensus 70 ~~~F~fD~Vf~~-~sQ~~Vy~~~~~~lv~~~l~--G~--N~tIfAYGqTGSGKTyTM------~G~~--------~~~~~ 130 (358)
T 2nr8_A 70 DWSFKLDGVLHD-ASQDLVYETVAKDVVSQALD--GY--NGTIMCYGQTGAGKTYTM------MGAT--------ENYKH 130 (358)
T ss_dssp EEEEECSEEEES-CCHHHHHHHHTHHHHHHHHT--TC--CEEEEEEESTTSSHHHHH------TBCS--------SCGGG
T ss_pred ceEEECCeecCC-cCHHHHHHHHHHHHHHHHhC--CC--ceEEEEECCCCCCCceEe------cccc--------ccccc
Confidence 455777776642 22222333334445555553 33 457999999999999774 2211 00112
Q ss_pred CCChHHHHHHHHHHH
Q 014243 190 AGEPAKLIRQRYREA 204 (428)
Q Consensus 190 ~Ge~~~~Ir~~F~~A 204 (428)
.|--.+.++.+|...
T Consensus 131 ~Giipra~~~lF~~i 145 (358)
T 2nr8_A 131 RGILPRALQQVFRMI 145 (358)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 455678888888876
No 462
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.48 E-value=0.17 Score=44.78 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.+.-|+|.|++|+|||+|..++...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999865
No 463
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.48 E-value=0.15 Score=44.86 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 356999999999999999998875
No 464
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.46 E-value=0.16 Score=44.05 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.+.-|++.|++|+|||+|...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 465
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=90.40 E-value=0.2 Score=44.46 Aligned_cols=24 Identities=17% Similarity=0.031 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+.+++.+|+|+|||+++-.++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999998877763
No 466
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.40 E-value=0.15 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|+|.|++|+|||+|...+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999854
No 467
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.37 E-value=0.14 Score=44.98 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...-|+|.|++|+|||+|...+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999999875
No 468
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.31 E-value=0.16 Score=44.74 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999865
No 469
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.29 E-value=0.16 Score=44.42 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|+|.|++|+|||+|...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999865
No 470
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.28 E-value=0.16 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999865
No 471
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.24 E-value=0.16 Score=44.57 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|+|.|++|+|||+|.+.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999876
No 472
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.21 E-value=0.16 Score=44.69 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999888765
No 473
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.20 E-value=0.16 Score=44.78 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...-|+|.|++|+|||+|..++...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999876
No 474
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.07 E-value=0.15 Score=44.69 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|+|.|++|+|||+|...+...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999999875
No 475
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.02 E-value=0.2 Score=44.46 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...-|+|.|++|+|||+|..++...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999865
No 476
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.99 E-value=0.16 Score=44.80 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 477
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.91 E-value=0.2 Score=43.74 Aligned_cols=25 Identities=16% Similarity=-0.072 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...-|++.|++|+|||+|...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999853
No 478
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.91 E-value=0.21 Score=43.63 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...-|+|.|++|+|||+|..++...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3467999999999999999999874
No 479
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.89 E-value=0.17 Score=44.91 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...-|+|.|++|+|||+|..++...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3457899999999999999999875
No 480
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.81 E-value=0.19 Score=45.76 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
|...+|+||.|+|||++..||.-.++-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 456789999999999999999877654
No 481
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.73 E-value=0.17 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 482
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.72 E-value=0.2 Score=44.66 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999875
No 483
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.70 E-value=0.2 Score=52.21 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
++. ..+.|.||.|+|||+|.++|+..+.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 444 6889999999999999999998753
No 484
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.65 E-value=0.36 Score=50.07 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCC
Q 014243 152 LGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
++|.|++|+|||.|+..||+...+
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 667899999999999999999875
No 485
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.63 E-value=0.18 Score=45.42 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...-|+|.|++|+|||+|.+.+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999875
No 486
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.58 E-value=0.23 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
...+.|.|+||+|||+|..+++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999863
No 487
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.52 E-value=0.2 Score=43.70 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014243 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-|+|.|++|+|||+|.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998765
No 488
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.45 E-value=0.46 Score=49.73 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=23.1
Q ss_pred EEEEEcCCCchHHHHH-HHHHHHhCCCeE
Q 014243 151 ILGIWGGKGQGKSFQC-ELVFAKMGINPI 178 (428)
Q Consensus 151 glLL~GpPGtGKT~LA-~aIA~elg~~~i 178 (428)
-++|.|++|||||+++ ..|++.....++
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~~~dv~ 192 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQRDSGIK 192 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTSSSSCE
T ss_pred EEEeecCCCCCcchHHHHHHHhhccCCce
Confidence 3789999999999995 789988766653
No 489
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.38 E-value=0.19 Score=45.13 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|.+.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999998865
No 490
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.34 E-value=0.41 Score=43.46 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
-+..+++||+|+|||+.+-.++..+ |..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4678899999999999888887774 66666653
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.32 E-value=0.12 Score=44.74 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=10.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999988754
No 492
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.29 E-value=0.2 Score=43.90 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014243 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.-|++.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999876
No 493
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.24 E-value=0.18 Score=51.74 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 014243 152 LGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~e 172 (428)
+.|.||+|+|||||.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 889999999999999999876
No 494
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.22 E-value=0.3 Score=51.17 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.4
Q ss_pred EEEEEcCCCchHHHH-HHHHHHHhCCCeE
Q 014243 151 ILGIWGGKGQGKSFQ-CELVFAKMGINPI 178 (428)
Q Consensus 151 glLL~GpPGtGKT~L-A~aIA~elg~~~i 178 (428)
-++|.|++|||||.| ...|++..+..++
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 193 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQGQNVI 193 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred EEEEecCCCCCccHHHHHHHHHhhcCCcE
Confidence 378999999999999 5799999776643
No 495
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.16 E-value=0.2 Score=44.62 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
+.-|+|.|++|+|||+|.+++..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999999864
No 496
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.14 E-value=0.2 Score=46.08 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.-|+|.|++|+|||+|..++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 467999999999999999999875
No 497
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.08 E-value=0.22 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 014243 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
..+.|.||+|+|||+|.++++....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4689999999999999999986543
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.01 E-value=1.2 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 014243 151 ILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e 172 (428)
-|.|.|.||+|||+|...++..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998764
No 499
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.01 E-value=0.22 Score=48.32 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014243 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
...+.|.||+|+|||+|.++++ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3578899999999999999998 54
No 500
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.97 E-value=0.11 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC
Q 014243 152 LGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg 174 (428)
++|.||+|||||+|.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 35789999999999999999864
Done!