Your job contains 1 sequence.
>014244
MAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKD
RWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTID
GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM
SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQM
VNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
EDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSI
GKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDA
IQSGNFYG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014244
(428 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2063922 - symbol:RCA "rubisco activase" specie... 1754 1.0e-180 1
TAIR|locus:2032687 - symbol:AT1G73110 species:3702 "Arabi... 814 4.1e-81 1
ZFIN|ZDB-GENE-030131-304 - symbol:psmc6 "proteasome (pros... 124 8.8e-05 1
RGD|1308825 - symbol:Psmc6 "proteasome (prosome, macropai... 123 0.00011 1
UNIPROTKB|Q5ZKX2 - symbol:PSMC6 "Uncharacterized protein"... 123 0.00011 1
UNIPROTKB|F1MLV1 - symbol:PSMC6 "26S protease regulatory ... 123 0.00011 1
UNIPROTKB|Q2KIW6 - symbol:PSMC6 "26S protease regulatory ... 123 0.00011 1
UNIPROTKB|P62333 - symbol:PSMC6 "26S protease regulatory ... 123 0.00011 1
UNIPROTKB|P62335 - symbol:PSMC6 "26S protease regulatory ... 123 0.00011 1
MGI|MGI:1914339 - symbol:Psmc6 "proteasome (prosome, macr... 123 0.00011 1
UNIPROTKB|J9P1N0 - symbol:PSMC6 "Uncharacterized protein"... 123 0.00012 1
UNIPROTKB|F1NCS8 - symbol:PSMC6 "Uncharacterized protein"... 123 0.00012 1
UNIPROTKB|F1SFE6 - symbol:PSMC6 "Uncharacterized protein"... 123 0.00012 1
RGD|2318218 - symbol:LOC100365869 "proteasome (prosome, m... 123 0.00012 1
TAIR|locus:2159996 - symbol:RPT4A "regulatory particle tr... 122 0.00015 1
UNIPROTKB|Q9FXT8 - symbol:OsRPT4 "Os02g0199900 protein" s... 122 0.00015 1
ASPGD|ASPL0000062283 - symbol:AN1366 species:162425 "Emer... 122 0.00037 1
TAIR|locus:2028200 - symbol:AT1G45000 species:3702 "Arabi... 118 0.00043 1
CGD|CAL0005827 - symbol:RPT4 species:5476 "Candida albica... 116 0.00079 1
SGD|S000005785 - symbol:RPT4 "ATPase of the 19S regulator... 116 0.00082 1
POMBASE|SPCC1682.16 - symbol:rpt4 "19S proteasome regulat... 115 0.00088 1
>TAIR|locus:2063922 [details] [associations]
symbol:RCA "rubisco activase" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0009507
"chloroplast" evidence=ISM;IDA;NAS] [GO:0030234 "enzyme regulator
activity" evidence=IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0046863 "ribulose-1,5-bisphosphate carboxylase/oxygenase
activator activity" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP;RCA] [GO:0010319 "stromule" evidence=IDA] [GO:0042742
"defense response to bacterium" evidence=IEP;RCA] [GO:0016020
"membrane" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0009753 "response to jasmonic acid stimulus" evidence=IEP]
[GO:0010150 "leaf senescence" evidence=IMP] [GO:0000165 "MAPK
cascade" evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009595 "detection of biotic stimulus"
evidence=RCA] [GO:0009637 "response to blue light" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009697 "salicylic acid biosynthetic process" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0009814 "defense response, incompatible interaction"
evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
acid mediated signaling pathway" evidence=RCA] [GO:0009867
"jasmonic acid mediated signaling pathway" evidence=RCA]
[GO:0010114 "response to red light" evidence=RCA] [GO:0010155
"regulation of proton transport" evidence=RCA] [GO:0010200
"response to chitin" evidence=RCA] [GO:0010218 "response to far red
light" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0043900
"regulation of multi-organism process" evidence=RCA] [GO:0050832
"defense response to fungus" evidence=RCA] [GO:0009416 "response to
light stimulus" evidence=IEP] InterPro:IPR003959 Pfam:PF00004
GO:GO:0005524 GO:GO:0005634 GO:GO:0005618 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009753 GO:GO:0048046 GO:GO:0009409
GO:GO:0042742 GO:GO:0009941 GO:GO:0043531 GO:GO:0010150
GO:GO:0009416 GO:GO:0009535 GO:GO:0010287 GO:GO:0010319
EMBL:AC003000 UniGene:At.25263 EMBL:X14212 EMBL:M86720
EMBL:AY052703 EMBL:AF325049 EMBL:AY056108 EMBL:BT000710
EMBL:AY088487 IPI:IPI00518163 IPI:IPI00526733 PIR:S04048 PIR:T01002
PIR:T01003 RefSeq:NP_565913.1 RefSeq:NP_850320.1 UniGene:At.25299
UniGene:At.25319 UniGene:At.47493 ProteinModelPortal:P10896
SMR:P10896 IntAct:P10896 STRING:P10896 SWISS-2DPAGE:P10896
World-2DPAGE:0003:P10896 PaxDb:P10896 PRIDE:P10896 ProMEX:P10896
EnsemblPlants:AT2G39730.1 GeneID:818558 KEGG:ath:AT2G39730
TAIR:At2g39730 eggNOG:NOG316327 HOGENOM:HOG000243931
InParanoid:P10896 OMA:HIAKNFM PhylomeDB:P10896 ProtClustDB:PLN00020
Genevestigator:P10896 GO:GO:0046863 Uniprot:P10896
Length = 474
Score = 1754 (622.5 bits), Expect = 1.0e-180, P = 1.0e-180
Identities = 338/424 (79%), Positives = 365/424 (86%)
Query: 6 PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKG 64
PLS NGSG+ A S P+S+F G + VS +K + SFK+ A V E+KQT DRW+G
Sbjct: 15 PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRG 73
Query: 65 LAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYI 124
LAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YI
Sbjct: 74 LAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYI 133
Query: 125 APAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184
APAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMSAGE
Sbjct: 134 APAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGE 193
Query: 185 LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNAT 244
LESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNAT
Sbjct: 194 LESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 253
Query: 245 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI 304
LMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRI
Sbjct: 254 LMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI 313
Query: 305 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSL 364
GVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK+ K L
Sbjct: 314 GVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRL 373
Query: 365 VNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSG 424
VNS+E P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI G
Sbjct: 374 VNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRG 433
Query: 425 NFYG 428
FYG
Sbjct: 434 TFYG 437
>TAIR|locus:2032687 [details] [associations]
symbol:AT1G73110 species:3702 "Arabidopsis thaliana"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0016117 "carotenoid biosynthetic process" evidence=RCA]
InterPro:IPR003959 Pfam:PF00004 EMBL:CP002684 GO:GO:0005524
GO:GO:0009535 HOGENOM:HOG000243931 ProtClustDB:PLN00020
UniGene:At.11687 UniGene:At.43232 EMBL:AF361834 EMBL:AY078044
EMBL:AK118942 IPI:IPI00532099 RefSeq:NP_177454.1
ProteinModelPortal:Q9AST9 SMR:Q9AST9 STRING:Q9AST9 PRIDE:Q9AST9
ProMEX:Q9AST9 EnsemblPlants:AT1G73110.1 GeneID:843642
KEGG:ath:AT1G73110 TAIR:At1g73110 InParanoid:Q9AST9 OMA:VEPVIMS
PhylomeDB:Q9AST9 Genevestigator:Q9AST9 Uniprot:Q9AST9
Length = 432
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 188/433 (43%), Positives = 260/433 (60%)
Query: 1 MAAA-VPLSFNGSGAATSVPSSSFFGTSL---KKVSSRI--PPS-----KVPS--ASFKI 47
MA A + L F +S SSS F +L +K+SS + PS KV + K
Sbjct: 1 MALANISLRFKFPPLQSSSSSSSSFNATLINTRKLSSIVCSKPSSNDGGKVANDDGGAKP 60
Query: 48 TAEVDENK--QTKKDRWKGLAY--DESDDQQDITRG--KGAVDSLFQAPMGTGTHYAVMS 101
++ E + K K Y D +I G G +D +F G ++
Sbjct: 61 RKKLSEQSSWEVKDSEGKDYLYRLGAESDNVNIAVGARSGMIDDVFIGDF-LGKDSDIV- 118
Query: 102 SYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQ 160
+DY + R++ ++ YIAP+F+DK+ VHI KN+++ NIK+PLILGIWGGKGQ
Sbjct: 119 -FDYRQKATRSF--EHLQGDYYIAPSFLDKVAVHIVKNYLAPSLNIKIPLILGIWGGKGQ 175
Query: 161 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIN 219
GK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIN
Sbjct: 176 GKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMIN 235
Query: 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP-RVPIIVTGNDF 278
D+DAG GR G TQ TVNNQ+V TLMN+ADNPT V + + + + RVP+IVTGNDF
Sbjct: 236 DIDAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDF 294
Query: 279 STLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 338
STLYAPLIR+GRMEKFYW PTRED + + ++ D ++ D++ +VD FP Q++DF+GA
Sbjct: 295 STLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGA 354
Query: 339 LRARVYDDEVRKWXXXXXXXXXX-KSLVNSKEA--APTFEQPRMTMEKLLEYGNMIVQEQ 395
LR+R YD + KW K L+ K+ P F P T+E LLE G ++ EQ
Sbjct: 355 LRSRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQ 414
Query: 396 ENVKRVQLADKYL 408
+ + +L+ +Y+
Sbjct: 415 KLIMETKLSKEYM 427
>ZFIN|ZDB-GENE-030131-304 [details] [associations]
symbol:psmc6 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
Uniprot:Q6DRD2
Length = 389
Score = 124 (48.7 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 47/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR+++ P + R+ + K G I ++ ++ + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337
Query: 328 FPGQSI 333
F G +
Sbjct: 338 FNGADL 343
>RGD|1308825 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
"plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
Uniprot:Q32PW9
Length = 381
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 164 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 219
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 220 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 269
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 270 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 329
Query: 328 FPGQSI 333
F G +
Sbjct: 330 FNGADL 335
>UNIPROTKB|Q5ZKX2 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
Uniprot:Q5ZKX2
Length = 389
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 328 FPGQSI 333
F G +
Sbjct: 338 FNGADL 343
>UNIPROTKB|F1MLV1 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
Length = 389
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 328 FPGQSI 333
F G +
Sbjct: 338 FNGADL 343
>UNIPROTKB|Q2KIW6 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
Length = 389
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 328 FPGQSI 333
F G +
Sbjct: 338 FNGADL 343
>UNIPROTKB|P62333 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IC]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
Uniprot:P62333
Length = 389
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 328 FPGQSI 333
F G +
Sbjct: 338 FNGADL 343
>UNIPROTKB|P62335 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:43179 "Spermophilus tridecemlineatus" [GO:0022624
"proteasome accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
Length = 389
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 328 FPGQSI 333
F G +
Sbjct: 338 FNGADL 343
>MGI|MGI:1914339 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
GermOnline:ENSMUSG00000021832 Uniprot:P62334
Length = 389
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 328 FPGQSI 333
F G +
Sbjct: 338 FNGADL 343
>UNIPROTKB|J9P1N0 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
Uniprot:J9P1N0
Length = 395
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 233
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 283
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 343
Query: 328 FPGQSI 333
F G +
Sbjct: 344 FNGADL 349
>UNIPROTKB|F1NCS8 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
Uniprot:F1NCS8
Length = 403
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 328 FPGQSI 333
F G +
Sbjct: 352 FNGADL 357
>UNIPROTKB|F1SFE6 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
ArrayExpress:F1SFE6 Uniprot:F1SFE6
Length = 403
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 328 FPGQSI 333
F G +
Sbjct: 352 FNGADL 357
>RGD|2318218 [details] [associations]
symbol:LOC100365869 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
Length = 403
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 48/186 (25%), Positives = 90/186 (48%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291
Query: 274 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 327
N TL L+R GR++ K + P + R+ + K G I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 328 FPGQSI 333
F G +
Sbjct: 352 FNGADL 357
>TAIR|locus:2159996 [details] [associations]
symbol:RPT4A "regulatory particle triple-A ATPase 4A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005618 "cell wall" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AB008264 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123393 EMBL:AF372945 EMBL:AY078040 EMBL:AK220732
IPI:IPI00547512 RefSeq:NP_199115.1 UniGene:At.6532
ProteinModelPortal:Q9SEI3 SMR:Q9SEI3 IntAct:Q9SEI3 STRING:Q9SEI3
PaxDb:Q9SEI3 PRIDE:Q9SEI3 EnsemblPlants:AT5G43010.1 GeneID:834316
KEGG:ath:AT5G43010 GeneFarm:2749 TAIR:At5g43010 InParanoid:Q9SEI3
OMA:NAPFDPE PhylomeDB:Q9SEI3 ProtClustDB:CLSN2679874 Uniprot:Q9SEI3
Length = 399
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 47/194 (24%), Positives = 92/194 (47%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
++ + C + ++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNLG- 277
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGVCK----GIFRNDNVADD 319
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 278 --KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 320 DIVKLVDTFPGQSI 333
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>UNIPROTKB|Q9FXT8 [details] [associations]
symbol:OsRPT4 "Os02g0199900 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0005730 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:AP008208
EMBL:CM000139 KO:K03064 EMBL:AP004869 TIGRFAMs:TIGR01242
OMA:EHKEVES GO:GO:0008540 ProtClustDB:CLSN2679874 EMBL:AP004812
EMBL:AB033536 RefSeq:NP_001046218.1 UniGene:Os.292 IntAct:Q9FXT8
STRING:Q9FXT8 EnsemblPlants:LOC_Os02g10640.1 GeneID:4328642
KEGG:osa:4328642 Uniprot:Q9FXT8
Length = 400
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 48/194 (24%), Positives = 92/194 (47%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
D + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGVCK----GIFRNDNVADD 319
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYE 336
Query: 320 DIVKLVDTFPGQSI 333
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>ASPGD|ASPL0000062283 [details] [associations]
symbol:AN1366 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
EMBL:BN001308 HOGENOM:HOG000223225 GO:GO:0017111 OMA:REGFTTI
EnsemblFungi:CADANIAT00001245 Uniprot:C8VRW3
Length = 729
Score = 122 (48.0 bits), Expect = 0.00037, P = 0.00037
Identities = 52/205 (25%), Positives = 95/205 (46%)
Query: 130 DKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188
D +++ +T+ + L N++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 179 DLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSG 238
Query: 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 248
+GE K +R+ + EA K+ C + I+++DA + + Q + ++V A L+
Sbjct: 239 MSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKRENS-QREMEKRIV-AQLL-- 290
Query: 249 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGV 306
TC+ + + P + + T N +L A L R GR +K P+ R +
Sbjct: 291 ----TCMDDLALEKTDGKPVIVLAAT-NRPDSLDAALRRGGRFDKEINMTVPSEPVREQI 345
Query: 307 CKGIFRNDNVADD-DIVKLVDTFPG 330
+ + R + DD D L PG
Sbjct: 346 LRALTRKMRLVDDLDFKTLAKRTPG 370
>TAIR|locus:2028200 [details] [associations]
symbol:AT1G45000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0000502
"proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0030244
"cellulose biosynthetic process" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005524
GO:GO:0005737 GO:GO:0005618 GO:GO:0005730 GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AC007915 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
ProtClustDB:CLSN2679874 EMBL:AY062709 EMBL:AY114673 IPI:IPI00531336
RefSeq:NP_175120.1 UniGene:At.27257 ProteinModelPortal:Q9MAK9
SMR:Q9MAK9 IntAct:Q9MAK9 STRING:Q9MAK9 PaxDb:Q9MAK9 PRIDE:Q9MAK9
EnsemblPlants:AT1G45000.1 GeneID:841065 KEGG:ath:AT1G45000
GeneFarm:2760 TAIR:At1g45000 InParanoid:Q9MAK9 PhylomeDB:Q9MAK9
Uniprot:Q9MAK9
Length = 399
Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
Identities = 46/194 (23%), Positives = 93/194 (47%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
++ + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGVCK----GIFRNDNVADD 319
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 320 DIVKLVDTFPGQSI 333
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>CGD|CAL0005827 [details] [associations]
symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
Length = 428
Score = 116 (45.9 bits), Expect = 0.00079, P = 0.00079
Identities = 50/194 (25%), Positives = 88/194 (45%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 203 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 261
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
K+ + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 262 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 308
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCK----GIFRNDNVADD 319
+ II+ N TL L+R GR+++ P R+ + K + + +
Sbjct: 309 LGQTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 368
Query: 320 DIVKLVDTFPGQSI 333
VK+ D F G I
Sbjct: 369 AAVKMSDGFNGADI 382
>SGD|S000005785 [details] [associations]
symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
"ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IMP] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0032968 "positive regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0019904 "protein domain specific binding"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
Uniprot:P53549
Length = 437
Score = 116 (45.9 bits), Expect = 0.00082, P = 0.00082
Identities = 50/194 (25%), Positives = 88/194 (45%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 319
II+ N TL L+R GR+++ P + R+ + K + + +
Sbjct: 321 TK---IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 320 DIVKLVDTFPGQSI 333
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>POMBASE|SPCC1682.16 [details] [associations]
symbol:rpt4 "19S proteasome regulatory subunit Rpt4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISM] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=NAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
NextBio:20800360 Uniprot:O74445
Length = 388
Score = 115 (45.5 bits), Expect = 0.00088, P = 0.00088
Identities = 46/194 (23%), Positives = 91/194 (46%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ V A +G+N + + + + GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
K+ + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DY 268
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 319
+ II+ N TL L+R GR+++ P + R+ + K + + + +
Sbjct: 269 LGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYE 328
Query: 320 DIVKLVDTFPGQSI 333
+VKL D G +
Sbjct: 329 ALVKLTDGTNGADL 342
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 428 418 0.00082 118 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 612 (65 KB)
Total size of DFA: 244 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.15u 0.13s 34.28t Elapsed: 00:00:01
Total cpu time: 34.15u 0.13s 34.28t Elapsed: 00:00:01
Start: Fri May 10 09:33:00 2013 End: Fri May 10 09:33:01 2013