BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014244
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 530 bits (1366), Expect = e-151, Method: Compositional matrix adjust.
Identities = 252/293 (86%), Positives = 265/293 (90%)
Query: 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 173
NLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KM
Sbjct: 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM 60
Query: 174 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 233
GINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQ
Sbjct: 61 GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ 120
Query: 234 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 293
YTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct: 121 YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180
Query: 294 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXX 353
FYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW
Sbjct: 181 FYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240
Query: 354 XXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 406
L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADK
Sbjct: 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293
>pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/102 (79%), Positives = 86/102 (84%)
Query: 299 TREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXX 358
TREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVD 65
Query: 359 XXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 400
K LVNSKE P+FEQP+MT++KLL YG M+VQEQENVKR
Sbjct: 66 TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKR 107
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 298
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 19/179 (10%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
I+ P ++G G GK+ A+ + ++A +L GE AKL+ R+A
Sbjct: 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLV----RDAF 267
Query: 206 DIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264
+ K+ + I++LDA G R Q L+N QL G + +
Sbjct: 268 ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN--------QLDGFSSDD 319
Query: 265 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADDDI 321
RV ++ N L L+R GR+++ + P+ + R + + I DDDI
Sbjct: 320 ---RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQ-IHSRKMTTDDDI 374
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
+ G G GK+ + V + G+N I + EL + GE + +RQ ++ A K
Sbjct: 49 LAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRA----KNSAP 104
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + +++DA R + + ++VN L ++ G+ +++ V I+
Sbjct: 105 CVIFFDEVDALCPRR-SDRETGASVRVVNQLL---------TEMDGLEARQQ---VFIMA 151
Query: 274 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRN 313
N + ++R GR++K F P DR+ + K I +N
Sbjct: 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKN 193
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 138 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 197
+ F+ L KVP + G G GK+ + V + + + M+ E G A +
Sbjct: 29 ERFLQL-GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARV 87
Query: 198 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 257
R ++EA + C + I+++DA G+ TT +N TL N V++
Sbjct: 88 RSLFKEA----RARAPCIVYIDEIDA-VGKKRSTTMSGFSNTEEEQTL-----NQLLVEM 137
Query: 258 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDR 303
GM + V ++ + N L L+R GR+++ F PT ++R
Sbjct: 138 DGMGTTDH---VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL---ESGNAGEPAKLIRQRYREAADI 207
I+ I GG G GK QCE + K G +S GEL E + E +KLIR DI
Sbjct: 14 IIFIIGGPGSGKGTQCEKLVEKYGFT--HLSTGELLREELASESERSKLIR-------DI 64
Query: 208 IKKGKM 213
+++G +
Sbjct: 65 MERGDL 70
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + V + + + EL G+ +L RQ ++ A
Sbjct: 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAG 272
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTCVQLPGMYN 262
+ + I+++DA GT +Y N+ + + T++ + + QL G +
Sbjct: 273 E----NAPSIVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLELLN-----QLDGFDD 318
Query: 263 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 293
+ + V +I+ N TL LIR GR+++
Sbjct: 319 RGD---VKVIMATNKIETLDPALIRPGRIDR 346
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 155 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 214
+G G GK+ + + + N I + EL + GE +R+ + +A ++ C
Sbjct: 55 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPC 110
Query: 215 CLMINDLD--AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272
L ++LD A A ++++N L ++ GM K+ V II
Sbjct: 111 VLFFDELDSIAKARGGNIGDGGGAADRVINQIL---------TEMDGMSTKK---NVFII 158
Query: 273 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD 319
N + ++R GR+++ + P ++ R+ + K R VA D
Sbjct: 159 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 207
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 155 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 214
+G G GK+ + + + N I + EL + GE +R+ + +A ++ C
Sbjct: 517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPC 572
Query: 215 CLMINDLD--AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272
L ++LD A A ++++N L ++ GM K+ V II
Sbjct: 573 VLFFDELDSIAKARGGNIGDGGGAADRVINQIL---------TEMDGMSTKKN---VFII 620
Query: 273 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD 319
N + ++R GR+++ + P ++ R+ + K R VA D
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 669
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
+K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 206 DIIKKGKMCCLMINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 247
+K + I++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 155 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 214
+G G GK+ + + + N I + EL + GE +R+ + +A ++ C
Sbjct: 517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPC 572
Query: 215 CLMINDLD--AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272
L ++LD A A ++++N L ++ GM K+ V II
Sbjct: 573 VLFFDELDSIAKARGGNIGDGGGAADRVINQIL---------TEMDGMSTKKN---VFII 620
Query: 273 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD 319
N + ++R GR+++ + P ++ R+ + K R VA D
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 669
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
+K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 206 DIIKKGKMCCLMINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 247
+K + I++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 29/163 (17%)
Query: 138 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 197
+ F +L I P + ++G G GK+ V + I + EL GE A+++
Sbjct: 233 ERFATL-GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMV 291
Query: 198 RQRYREAADIIKKGKMCCLMINDLDA-GAGRM----GGTTQYTVNNQMVNATLMNIADNP 252
R+ + ++ + K C + +++DA G R GG + V T++ +
Sbjct: 292 RELF----EMARTKKACIIFFDEIDAVGGARFDDGAGGDNE-------VQRTMLEL---- 336
Query: 253 TCVQLPGMYNKEENPR--VPIIVTGNDFSTLYAPLIRDGRMEK 293
QL G +PR + ++ N +TL L+R GR+++
Sbjct: 337 -ITQLDGF-----DPRGNIKVMFATNRPNTLDPALLRPGRIDR 373
>pdb|1ZIX|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, R105h, C123s, G211d, K234n)- 1.8 A
Length = 236
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 96 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLV----VHITKNFMSLPNIKVPLI 151
HYA Y GL Y+L + L A ++D+ V V + K +P +K P +
Sbjct: 105 HYARHQPYSNGKVGLVGYSLGGALAFLVAAKGYVDRAVGYYGVGLEKQLNKVPEVKHPAL 164
Query: 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190
+ G + +L+ G NP++ E+G++
Sbjct: 165 FHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHS 203
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 22/149 (14%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKK 210
++G G GK+ V I +S EL GE ++++R+ + RE A I
Sbjct: 187 LYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSI-- 244
Query: 211 GKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269
+ ++++D+ G+ R+ G+ Q L+N QL G E + +
Sbjct: 245 -----IFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN--------QLDGF---ETSKNI 288
Query: 270 PIIVTGNDFSTLYAPLIRDGRMEKFYWAP 298
II+ N L L+R GR+++ P
Sbjct: 289 KIIMATNRLDILDPALLRPGRIDRKIEFP 317
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ + V I ++ E GE +++R +R A ++
Sbjct: 211 LYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA----RENAP 266
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
+ I+++D+ A + T +++ V L+ + Q+ G +++ V +I+
Sbjct: 267 SIIFIDEVDSIATKRFDAQ--TGSDREVQRILIEL-----LTQMDGF---DQSTNVKVIM 316
Query: 274 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 303
N TL L+R GR+++ P+ DR
Sbjct: 317 ATNRADTLDPALLRPGRLDRKIEFPSLRDR 346
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185
PL++ + GG G GK QC + K G +SAGEL
Sbjct: 3 PLVVFVLGGPGAGKGTQCARIVEKYGYT--HLSAGEL 37
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 65 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 120
Query: 214 CCLMINDLDAGAGRMG 229
+ I+++DA G G
Sbjct: 121 SIIFIDEVDALTGTRG 136
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 56 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 111
Query: 214 CCLMINDLDAGAGRMG 229
+ I+ +DA G G
Sbjct: 112 SIIFIDQVDALTGTRG 127
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 208
P ++G+ GG GKS CE + +G N + QR R+ I+
Sbjct: 25 PFLIGVSGGTASGKSTVCEKIMELLGQNE-------------------VEQRQRKVV-IL 64
Query: 209 KKGKMCCLMINDLDAGA--GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266
+ + ++ + A A G+ +N +++ TL NI + T V++P Y+ +
Sbjct: 65 SQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKT-VEVP-TYDFVTH 122
Query: 267 PRVP 270
R+P
Sbjct: 123 SRLP 126
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 74 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 129
Query: 214 CCLMINDLDAGAGRMG 229
+ I+ +DA G G
Sbjct: 130 SIIFIDQVDALTGTRG 145
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
+K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 206 DIIKKGKMCCLMINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 247
+K + I++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
+K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 206 DIIKKGKMCCLMINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 247
+K + I++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
+K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 206 DIIKKGKMCCLMINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 247
+K + I++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 89 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 144
Query: 214 CCLMINDLDAGAGRMG 229
+ I+ +DA G G
Sbjct: 145 SIIFIDQVDALTGTRG 160
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
+K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 206 DIIKKGKMCCLMINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 247
+K + I++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM---MSAGELESGNAGEPAKLIRQRYREAADI 207
I+ + GG G GK QCE + K G + + E+ SG+A R ++ ++I
Sbjct: 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSA---------RGKKLSEI 61
Query: 208 IKKGKMCCL 216
++KG++ L
Sbjct: 62 MEKGQLVPL 70
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM---MSAGELESGNAGEPAKLIRQRY 201
+K I+ + GG G GK QCE + K G + + E+ SG+A R
Sbjct: 5 KLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSA---------RG 55
Query: 202 REAADIIKKGKMCCL 216
+ ++I++KG++ L
Sbjct: 56 KMLSEIMEKGQLVPL 70
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 178
PN P ++G+ GG GKS C + +G N +
Sbjct: 15 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEV 49
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 178
PN P ++G+ GG GKS C + +G N +
Sbjct: 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEV 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,608,607
Number of Sequences: 62578
Number of extensions: 541475
Number of successful extensions: 1350
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1335
Number of HSP's gapped (non-prelim): 37
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)