Query 014244
Match_columns 428
No_of_seqs 449 out of 2589
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:15:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 3.9E-96 8E-101 733.6 32.2 407 3-413 5-413 (413)
2 KOG0651 26S proteasome regulat 100.0 3E-61 6.6E-66 468.0 9.7 359 5-409 14-387 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 2E-46 4.3E-51 371.0 16.6 178 144-335 180-363 (406)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 8.1E-44 1.8E-48 369.5 19.0 268 116-413 511-794 (802)
5 KOG0734 AAA+-type ATPase conta 100.0 1.3E-43 2.9E-48 363.3 11.3 254 143-416 331-595 (752)
6 KOG0730 AAA+-type ATPase [Post 100.0 3.8E-42 8.2E-47 361.0 19.2 175 143-334 462-642 (693)
7 KOG0736 Peroxisome assembly fa 100.0 1.5E-41 3.3E-46 359.7 19.2 240 144-407 700-951 (953)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 2.6E-40 5.6E-45 343.5 21.2 208 131-354 204-418 (802)
9 KOG0731 AAA+-type ATPase conta 100.0 5.5E-39 1.2E-43 345.4 12.6 257 143-416 338-606 (774)
10 KOG0735 AAA+-type ATPase [Post 100.0 6.7E-38 1.5E-42 329.6 18.1 198 145-362 697-900 (952)
11 COG0465 HflB ATP-dependent Zn 100.0 3.9E-38 8.5E-43 333.5 16.5 260 144-417 178-445 (596)
12 KOG0738 AAA+-type ATPase [Post 100.0 1.2E-36 2.5E-41 303.6 16.9 217 126-360 209-445 (491)
13 KOG0727 26S proteasome regulat 100.0 4E-36 8.7E-41 286.1 13.6 180 142-335 182-367 (408)
14 KOG0652 26S proteasome regulat 100.0 2.6E-35 5.5E-40 281.7 12.1 179 142-334 198-382 (424)
15 KOG0726 26S proteasome regulat 100.0 3.2E-35 7E-40 284.4 11.4 180 143-336 213-398 (440)
16 KOG0728 26S proteasome regulat 100.0 1.1E-34 2.3E-39 276.2 14.6 179 143-335 175-359 (404)
17 KOG0729 26S proteasome regulat 100.0 6.4E-35 1.4E-39 279.6 11.8 178 144-335 206-389 (435)
18 COG0464 SpoVK ATPases of the A 100.0 2.1E-33 4.5E-38 296.7 20.6 175 145-336 272-454 (494)
19 KOG0741 AAA+-type ATPase [Post 100.0 3.2E-34 6.9E-39 294.3 12.0 255 143-412 250-547 (744)
20 TIGR01243 CDC48 AAA family ATP 100.0 8.1E-33 1.8E-37 305.0 23.2 239 143-407 481-729 (733)
21 CHL00195 ycf46 Ycf46; Provisio 100.0 6E-33 1.3E-37 291.9 20.7 174 144-335 254-435 (489)
22 KOG0737 AAA+-type ATPase [Post 100.0 1E-32 2.2E-37 274.7 17.6 259 113-391 89-359 (386)
23 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.8E-33 1.2E-37 316.5 16.2 173 144-336 1625-1849(2281)
24 TIGR01241 FtsH_fam ATP-depende 100.0 1E-32 2.2E-37 291.9 15.4 207 112-336 51-267 (495)
25 CHL00176 ftsH cell division pr 100.0 5.2E-33 1.1E-37 300.5 13.2 259 144-416 211-476 (638)
26 KOG0739 AAA+-type ATPase [Post 100.0 5.7E-33 1.2E-37 269.5 10.5 173 145-335 162-341 (439)
27 PTZ00454 26S protease regulato 100.0 3.5E-32 7.7E-37 280.1 16.4 181 141-335 171-357 (398)
28 PRK03992 proteasome-activating 100.0 1.3E-31 2.7E-36 275.7 16.9 181 142-336 158-344 (389)
29 COG1223 Predicted ATPase (AAA+ 100.0 1.5E-31 3.2E-36 255.8 16.1 183 134-334 133-324 (368)
30 TIGR03689 pup_AAA proteasome A 100.0 8.5E-31 1.9E-35 276.0 21.2 252 142-409 209-496 (512)
31 PRK10733 hflB ATP-dependent me 100.0 6E-31 1.3E-35 286.0 14.1 254 144-416 180-446 (644)
32 PTZ00361 26 proteosome regulat 100.0 3.1E-30 6.8E-35 268.0 15.6 179 143-335 211-395 (438)
33 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-29 2.8E-34 266.8 16.7 239 143-409 212-462 (693)
34 TIGR01242 26Sp45 26S proteasom 100.0 2.4E-29 5.2E-34 256.4 14.7 179 143-335 150-334 (364)
35 KOG0740 AAA+-type ATPase [Post 100.0 3.1E-29 6.7E-34 256.8 10.7 172 147-335 184-362 (428)
36 KOG0732 AAA+-type ATPase conta 99.9 3E-27 6.6E-32 260.7 17.3 179 142-337 292-482 (1080)
37 TIGR01243 CDC48 AAA family ATP 99.9 6.3E-26 1.4E-30 250.4 19.9 177 143-336 206-388 (733)
38 PF00004 AAA: ATPase family as 99.9 2.3E-23 5.1E-28 179.3 12.7 130 152-298 1-131 (132)
39 KOG0743 AAA+-type ATPase [Post 99.9 8.7E-22 1.9E-26 201.3 17.7 192 121-333 206-409 (457)
40 KOG0744 AAA+-type ATPase [Post 99.8 1.7E-20 3.8E-25 184.5 12.1 183 116-312 142-341 (423)
41 COG0466 Lon ATP-dependent Lon 99.8 4.1E-20 8.8E-25 197.0 12.9 149 150-314 351-511 (782)
42 KOG2004 Mitochondrial ATP-depe 99.8 6.4E-19 1.4E-23 187.2 15.2 192 144-363 433-637 (906)
43 KOG0742 AAA+-type ATPase [Post 99.8 1.2E-18 2.6E-23 175.7 15.1 186 130-336 364-584 (630)
44 TIGR00763 lon ATP-dependent pr 99.7 5E-17 1.1E-21 180.8 20.3 165 150-330 348-536 (775)
45 TIGR02881 spore_V_K stage V sp 99.7 5E-17 1.1E-21 158.7 14.6 140 149-315 42-195 (261)
46 CHL00181 cbbX CbbX; Provisiona 99.7 1E-16 2.2E-21 159.1 13.6 140 150-315 60-213 (287)
47 TIGR02880 cbbX_cfxQ probable R 99.7 2.9E-16 6.4E-21 155.5 15.3 141 149-315 58-212 (284)
48 KOG0736 Peroxisome assembly fa 99.7 1.8E-15 3.9E-20 162.2 18.4 175 145-336 427-605 (953)
49 KOG0735 AAA+-type ATPase [Post 99.7 1E-15 2.2E-20 163.0 15.2 175 148-336 430-616 (952)
50 TIGR02639 ClpA ATP-dependent C 99.6 2.4E-15 5.2E-20 166.5 14.3 165 148-337 202-399 (731)
51 PRK10787 DNA-binding ATP-depen 99.6 8.7E-15 1.9E-19 162.6 18.4 147 149-312 349-507 (784)
52 COG0464 SpoVK ATPases of the A 99.6 9.1E-15 2E-19 154.9 17.6 174 144-336 13-192 (494)
53 PF05496 RuvB_N: Holliday junc 99.6 2.1E-14 4.6E-19 136.8 14.6 144 148-318 49-199 (233)
54 PRK00080 ruvB Holliday junctio 99.5 7.9E-14 1.7E-18 140.5 14.1 157 147-330 49-217 (328)
55 PRK11034 clpA ATP-dependent Cl 99.5 6.5E-14 1.4E-18 154.8 14.6 140 148-312 206-363 (758)
56 TIGR03345 VI_ClpV1 type VI sec 99.5 1.1E-13 2.3E-18 155.4 14.9 164 149-338 208-405 (852)
57 PRK10865 protein disaggregatio 99.5 7.6E-14 1.6E-18 156.8 13.5 139 149-312 199-355 (857)
58 TIGR00635 ruvB Holliday juncti 99.5 2.9E-13 6.4E-18 134.2 14.5 156 148-330 29-196 (305)
59 PRK04195 replication factor C 99.5 3.6E-13 7.9E-18 142.6 16.1 151 147-329 37-193 (482)
60 CHL00095 clpC Clp protease ATP 99.5 3.6E-13 7.7E-18 151.0 16.5 170 146-341 197-399 (821)
61 TIGR03346 chaperone_ClpB ATP-d 99.5 2.7E-13 6E-18 152.4 15.0 168 148-341 193-394 (852)
62 PRK05342 clpX ATP-dependent pr 99.5 2.4E-13 5.1E-18 141.2 13.3 103 149-251 108-213 (412)
63 COG2256 MGS1 ATPase related to 99.5 5.9E-13 1.3E-17 135.1 15.3 124 150-310 49-175 (436)
64 PRK07940 DNA polymerase III su 99.5 3.7E-13 8E-18 139.1 13.8 161 145-336 32-214 (394)
65 PRK07003 DNA polymerase III su 99.5 5.9E-13 1.3E-17 145.0 14.9 167 133-335 24-220 (830)
66 PHA02544 44 clamp loader, smal 99.5 1.6E-12 3.4E-17 129.6 16.9 149 147-329 41-200 (316)
67 TIGR00362 DnaA chromosomal rep 99.5 5.7E-13 1.2E-17 138.0 14.1 191 112-339 106-311 (405)
68 PRK00149 dnaA chromosomal repl 99.5 3.9E-13 8.4E-18 141.2 12.2 193 111-340 117-324 (450)
69 TIGR00390 hslU ATP-dependent p 99.5 4.3E-13 9.2E-18 138.3 12.1 154 148-307 46-342 (441)
70 TIGR00382 clpX endopeptidase C 99.4 6E-13 1.3E-17 137.9 13.1 128 149-277 116-247 (413)
71 PRK14956 DNA polymerase III su 99.4 8.1E-13 1.8E-17 138.7 14.2 145 137-317 30-199 (484)
72 PRK12422 chromosomal replicati 99.4 2.5E-12 5.4E-17 135.0 17.0 194 112-341 107-316 (445)
73 PRK14086 dnaA chromosomal repl 99.4 1.3E-12 2.9E-17 140.4 14.6 184 111-331 283-481 (617)
74 PRK12323 DNA polymerase III su 99.4 9.7E-13 2.1E-17 141.7 12.7 167 133-335 24-225 (700)
75 PRK05201 hslU ATP-dependent pr 99.4 8.6E-13 1.9E-17 136.1 11.6 153 149-307 50-344 (443)
76 PRK14962 DNA polymerase III su 99.4 4E-12 8.6E-17 134.3 16.1 147 147-327 34-207 (472)
77 COG2255 RuvB Holliday junction 99.4 4.6E-12 1E-16 123.7 14.7 157 147-333 50-221 (332)
78 PRK13342 recombination factor 99.4 7.9E-12 1.7E-16 130.0 16.6 141 149-326 36-184 (413)
79 PRK14960 DNA polymerase III su 99.4 2.3E-12 4.9E-17 139.2 12.6 148 134-317 24-196 (702)
80 PRK14088 dnaA chromosomal repl 99.4 3.1E-12 6.7E-17 134.1 13.0 182 112-331 101-298 (440)
81 TIGR02640 gas_vesic_GvpN gas v 99.4 2.2E-11 4.8E-16 119.3 17.3 146 150-311 22-198 (262)
82 PLN03025 replication factor C 99.4 7.1E-12 1.5E-16 125.9 13.9 160 136-333 24-194 (319)
83 PRK14949 DNA polymerase III su 99.4 7.7E-12 1.7E-16 138.6 15.3 183 113-334 13-219 (944)
84 PRK06893 DNA replication initi 99.4 4E-12 8.7E-17 122.0 11.1 146 150-331 40-196 (229)
85 PRK14961 DNA polymerase III su 99.3 1.5E-11 3.3E-16 125.8 15.0 156 136-321 27-203 (363)
86 PRK00411 cdc6 cell division co 99.3 2.1E-11 4.7E-16 125.0 15.0 162 148-330 54-246 (394)
87 PRK07994 DNA polymerase III su 99.3 1.1E-11 2.4E-16 134.7 13.4 165 134-334 25-219 (647)
88 PRK08691 DNA polymerase III su 99.3 1.5E-11 3.3E-16 133.7 14.1 164 133-326 24-208 (709)
89 PRK06645 DNA polymerase III su 99.3 2.1E-11 4.5E-16 129.6 14.2 143 147-317 41-206 (507)
90 PRK12402 replication factor C 99.3 1.7E-11 3.6E-16 122.7 12.5 155 151-334 38-221 (337)
91 KOG0989 Replication factor C, 99.3 5.9E-12 1.3E-16 124.1 8.7 160 123-319 30-209 (346)
92 TIGR02639 ClpA ATP-dependent C 99.3 3.3E-11 7.2E-16 133.7 15.8 141 149-312 483-663 (731)
93 PF07728 AAA_5: AAA domain (dy 99.3 1.1E-12 2.5E-17 115.2 3.1 121 151-291 1-139 (139)
94 PRK14958 DNA polymerase III su 99.3 1.4E-11 3.1E-16 131.3 12.0 149 133-317 24-197 (509)
95 PF07724 AAA_2: AAA domain (Cd 99.3 1.9E-12 4.1E-17 119.3 4.5 126 149-280 3-132 (171)
96 TIGR02928 orc1/cdc6 family rep 99.3 6E-11 1.3E-15 120.3 15.9 140 147-312 38-213 (365)
97 PRK07764 DNA polymerase III su 99.3 3.7E-11 8E-16 134.1 15.0 149 133-317 23-198 (824)
98 PRK11034 clpA ATP-dependent Cl 99.3 3.6E-11 7.9E-16 133.2 14.7 142 150-311 489-666 (758)
99 PRK05642 DNA replication initi 99.3 4.4E-11 9.6E-16 115.3 13.5 174 112-331 15-201 (234)
100 PRK14963 DNA polymerase III su 99.3 5.1E-11 1.1E-15 126.8 15.0 146 136-317 25-194 (504)
101 PTZ00112 origin recognition co 99.3 2.4E-10 5.2E-15 125.9 20.3 158 148-330 780-973 (1164)
102 PRK05563 DNA polymerase III su 99.3 7.8E-11 1.7E-15 127.0 16.0 160 113-317 13-197 (559)
103 PRK14087 dnaA chromosomal repl 99.3 5.4E-11 1.2E-15 125.1 14.4 195 110-339 109-320 (450)
104 KOG1969 DNA replication checkp 99.3 6.8E-11 1.5E-15 127.1 15.1 161 148-330 325-502 (877)
105 PRK14970 DNA polymerase III su 99.3 8.8E-11 1.9E-15 119.9 15.3 169 134-334 26-204 (367)
106 PRK14951 DNA polymerase III su 99.3 4.1E-11 8.9E-16 129.9 13.5 169 113-326 13-213 (618)
107 PRK14964 DNA polymerase III su 99.3 6.2E-11 1.4E-15 125.4 14.5 158 133-326 21-205 (491)
108 PRK14957 DNA polymerase III su 99.3 7E-11 1.5E-15 126.5 14.9 137 147-317 36-197 (546)
109 PF00308 Bac_DnaA: Bacterial d 99.3 2.9E-11 6.2E-16 115.6 10.6 181 112-330 4-200 (219)
110 PRK08084 DNA replication initi 99.3 1E-10 2.3E-15 112.7 14.6 158 133-331 32-202 (235)
111 TIGR03420 DnaA_homol_Hda DnaA 99.3 7.1E-11 1.5E-15 111.7 13.0 164 131-334 23-197 (226)
112 TIGR02397 dnaX_nterm DNA polym 99.2 6.6E-11 1.4E-15 119.5 13.5 145 147-325 34-205 (355)
113 cd00009 AAA The AAA+ (ATPases 99.2 7.7E-11 1.7E-15 100.9 11.6 128 148-298 18-150 (151)
114 PRK14959 DNA polymerase III su 99.2 7.3E-11 1.6E-15 127.5 13.7 154 133-322 24-204 (624)
115 PRK14965 DNA polymerase III su 99.2 5E-11 1.1E-15 128.9 12.5 160 113-317 13-197 (576)
116 PRK08903 DnaA regulatory inact 99.2 8.1E-11 1.8E-15 112.1 12.2 156 133-334 28-195 (227)
117 PRK14952 DNA polymerase III su 99.2 2.6E-10 5.7E-15 123.1 17.3 159 114-317 11-196 (584)
118 TIGR00678 holB DNA polymerase 99.2 1E-10 2.2E-15 108.4 12.3 139 147-322 12-175 (188)
119 TIGR01650 PD_CobS cobaltochela 99.2 4.2E-11 9.1E-16 120.4 10.3 143 149-311 64-233 (327)
120 PRK13341 recombination factor 99.2 1E-10 2.3E-15 129.1 14.1 144 150-330 53-209 (725)
121 PRK05896 DNA polymerase III su 99.2 7.6E-11 1.6E-15 126.9 12.6 142 147-322 36-204 (605)
122 PRK14969 DNA polymerase III su 99.2 6.5E-11 1.4E-15 126.8 12.0 154 134-317 25-197 (527)
123 COG1219 ClpX ATP-dependent pro 99.2 5.2E-11 1.1E-15 117.9 10.2 103 150-252 98-203 (408)
124 smart00382 AAA ATPases associa 99.2 1.2E-10 2.5E-15 98.5 10.9 125 149-296 2-143 (148)
125 PRK08116 hypothetical protein; 99.2 7.6E-11 1.6E-15 116.1 11.0 135 107-278 76-221 (268)
126 TIGR03345 VI_ClpV1 type VI sec 99.2 3.7E-10 8E-15 127.1 17.8 142 147-311 593-780 (852)
127 PRK07133 DNA polymerase III su 99.2 1.5E-10 3.3E-15 126.8 13.9 143 147-317 38-196 (725)
128 PRK12377 putative replication 99.2 1.6E-10 3.5E-15 112.5 11.9 114 133-278 86-206 (248)
129 PRK06305 DNA polymerase III su 99.2 3.6E-10 7.8E-15 119.0 15.2 167 113-324 14-208 (451)
130 KOG2028 ATPase related to the 99.2 2.2E-10 4.8E-15 115.2 12.8 133 137-309 153-292 (554)
131 PRK14953 DNA polymerase III su 99.2 3.9E-10 8.5E-15 119.7 15.4 161 135-325 26-207 (486)
132 PRK14948 DNA polymerase III su 99.2 4E-10 8.7E-15 122.7 15.4 147 147-321 36-205 (620)
133 PRK06620 hypothetical protein; 99.2 3.9E-10 8.5E-15 107.5 13.5 147 133-331 27-182 (214)
134 TIGR02902 spore_lonB ATP-depen 99.2 2.7E-10 5.8E-15 122.2 13.2 159 148-322 85-289 (531)
135 PRK00440 rfc replication facto 99.1 1.3E-09 2.9E-14 108.0 16.4 158 133-327 25-192 (319)
136 PRK08727 hypothetical protein; 99.1 5.5E-10 1.2E-14 107.6 13.1 143 149-330 41-196 (233)
137 PRK14955 DNA polymerase III su 99.1 3.2E-10 6.9E-15 117.5 11.0 154 136-320 27-210 (397)
138 PRK06835 DNA replication prote 99.1 3.2E-10 6.9E-15 114.8 10.7 124 124-278 159-289 (329)
139 PRK06647 DNA polymerase III su 99.1 7.3E-10 1.6E-14 119.5 13.5 142 147-317 36-197 (563)
140 PRK11331 5-methylcytosine-spec 99.1 5.5E-10 1.2E-14 116.5 12.0 137 149-299 194-358 (459)
141 PRK07952 DNA replication prote 99.1 6.5E-10 1.4E-14 108.1 11.8 114 133-278 84-205 (244)
142 PRK09111 DNA polymerase III su 99.1 8.3E-10 1.8E-14 119.7 13.7 155 133-317 32-210 (598)
143 KOG0745 Putative ATP-dependent 99.1 4.9E-10 1.1E-14 114.8 10.0 148 150-300 227-388 (564)
144 TIGR03346 chaperone_ClpB ATP-d 99.1 1.1E-09 2.3E-14 123.7 13.8 143 149-311 595-776 (852)
145 PRK14954 DNA polymerase III su 99.0 2.5E-09 5.4E-14 116.4 14.7 170 113-321 13-211 (620)
146 PRK10865 protein disaggregatio 99.0 3.3E-09 7.1E-14 119.7 16.1 141 151-311 600-779 (857)
147 PRK06921 hypothetical protein; 99.0 1.3E-09 2.7E-14 107.3 11.1 83 133-223 98-188 (266)
148 PRK08451 DNA polymerase III su 99.0 2.2E-09 4.8E-14 114.7 13.6 146 147-326 34-206 (535)
149 CHL00095 clpC Clp protease ATP 99.0 1.7E-09 3.6E-14 121.7 13.2 144 147-311 536-732 (821)
150 PRK05707 DNA polymerase III su 99.0 2.7E-09 5.8E-14 108.0 13.4 162 146-335 19-203 (328)
151 COG0470 HolB ATPase involved i 99.0 1.5E-09 3.2E-14 107.7 11.1 129 147-305 22-175 (325)
152 PF05673 DUF815: Protein of un 99.0 6.9E-09 1.5E-13 100.4 15.2 151 134-318 37-214 (249)
153 PRK14950 DNA polymerase III su 99.0 2.5E-09 5.4E-14 116.1 13.3 160 136-325 27-208 (585)
154 COG0714 MoxR-like ATPases [Gen 99.0 6.3E-10 1.4E-14 112.3 8.1 145 150-311 44-203 (329)
155 TIGR02903 spore_lon_C ATP-depe 99.0 6.1E-09 1.3E-13 113.6 15.8 151 148-316 174-371 (615)
156 PHA02244 ATPase-like protein 99.0 2.1E-09 4.6E-14 109.7 10.9 136 149-307 119-269 (383)
157 PRK08939 primosomal protein Dn 99.0 3.7E-09 8.1E-14 106.0 11.3 69 148-224 155-229 (306)
158 PRK07471 DNA polymerase III su 99.0 1.6E-08 3.5E-13 103.8 16.0 161 147-335 39-238 (365)
159 PRK05564 DNA polymerase III su 98.9 2E-08 4.3E-13 100.7 14.8 145 147-321 24-173 (313)
160 PRK09112 DNA polymerase III su 98.9 2.9E-08 6.2E-13 101.5 15.8 162 146-335 42-240 (351)
161 PRK08181 transposase; Validate 98.9 5.8E-09 1.3E-13 102.8 10.1 100 149-278 106-209 (269)
162 COG1474 CDC6 Cdc6-related prot 98.9 5.7E-08 1.2E-12 99.8 16.5 139 148-312 41-204 (366)
163 PRK14971 DNA polymerase III su 98.9 2.2E-08 4.9E-13 109.1 13.9 137 147-317 37-199 (614)
164 PRK06964 DNA polymerase III su 98.9 4.4E-08 9.6E-13 99.7 15.2 157 147-335 19-225 (342)
165 COG1224 TIP49 DNA helicase TIP 98.9 2.1E-07 4.5E-12 93.9 19.5 48 147-194 63-112 (450)
166 COG0542 clpA ATP-binding subun 98.9 1.1E-08 2.4E-13 112.5 11.4 143 146-311 517-705 (786)
167 PRK09087 hypothetical protein; 98.9 4.1E-08 8.9E-13 94.4 13.7 133 150-330 45-187 (226)
168 COG1220 HslU ATP-dependent pro 98.8 5.9E-08 1.3E-12 97.2 14.5 90 212-307 250-345 (444)
169 KOG0741 AAA+-type ATPase [Post 98.8 1.5E-08 3.1E-13 106.2 10.2 144 145-307 534-682 (744)
170 PRK04132 replication factor C 98.8 2.6E-08 5.7E-13 111.2 13.0 139 153-325 568-718 (846)
171 COG0593 DnaA ATPase involved i 98.8 2.6E-08 5.7E-13 103.0 11.8 191 111-339 82-287 (408)
172 PRK13407 bchI magnesium chelat 98.8 1.2E-08 2.6E-13 103.6 9.1 84 212-311 128-216 (334)
173 PRK07399 DNA polymerase III su 98.8 8.5E-08 1.9E-12 96.6 15.1 161 147-336 24-222 (314)
174 PF01695 IstB_IS21: IstB-like 98.8 3.7E-09 7.9E-14 98.1 4.5 102 147-278 45-150 (178)
175 PRK06526 transposase; Provisio 98.8 1.3E-08 2.8E-13 99.6 7.8 73 148-225 97-172 (254)
176 COG2812 DnaX DNA polymerase II 98.8 1.8E-08 3.9E-13 107.0 8.6 170 131-330 22-212 (515)
177 PRK08769 DNA polymerase III su 98.7 1.4E-07 3E-12 95.3 13.9 159 146-336 23-209 (319)
178 PRK08058 DNA polymerase III su 98.7 2.3E-07 4.9E-12 94.0 15.4 129 146-309 25-180 (329)
179 COG1484 DnaC DNA replication p 98.7 5.2E-08 1.1E-12 95.4 10.3 69 148-224 104-179 (254)
180 PRK06871 DNA polymerase III su 98.7 1.4E-07 3.1E-12 95.3 12.6 161 147-335 22-203 (325)
181 TIGR00602 rad24 checkpoint pro 98.7 2.7E-07 5.8E-12 100.7 15.5 145 146-313 107-289 (637)
182 TIGR02031 BchD-ChlD magnesium 98.7 2.2E-08 4.7E-13 108.8 7.0 144 150-311 17-174 (589)
183 PRK09183 transposase/IS protei 98.7 2.1E-08 4.5E-13 98.4 5.9 75 146-225 99-177 (259)
184 smart00350 MCM minichromosome 98.7 2.1E-08 4.6E-13 107.2 6.2 137 151-311 238-400 (509)
185 CHL00081 chlI Mg-protoporyphyr 98.7 1.5E-07 3.3E-12 95.9 11.7 86 210-311 142-232 (350)
186 TIGR02442 Cob-chelat-sub cobal 98.6 5.3E-08 1.2E-12 106.7 8.2 144 150-311 26-214 (633)
187 PF07726 AAA_3: ATPase family 98.6 3.9E-08 8.6E-13 86.5 5.3 115 151-287 1-127 (131)
188 COG0542 clpA ATP-binding subun 98.6 1.3E-07 2.9E-12 104.2 10.5 135 151-311 193-346 (786)
189 PRK07993 DNA polymerase III su 98.6 1.7E-07 3.7E-12 95.2 10.4 160 145-335 20-204 (334)
190 TIGR03015 pepcterm_ATPase puta 98.6 4E-06 8.7E-11 81.3 19.3 76 149-224 43-135 (269)
191 PF00158 Sigma54_activat: Sigm 98.6 1.4E-07 3.1E-12 86.7 8.3 133 131-292 9-155 (168)
192 TIGR02030 BchI-ChlI magnesium 98.6 1.4E-07 2.9E-12 96.0 8.5 86 210-311 129-219 (337)
193 PRK06090 DNA polymerase III su 98.6 1.2E-06 2.5E-11 88.6 14.8 159 146-336 22-202 (319)
194 PRK13531 regulatory ATPase Rav 98.6 3E-07 6.4E-12 97.1 10.9 140 149-310 39-193 (498)
195 smart00763 AAA_PrkA PrkA AAA d 98.6 7.9E-07 1.7E-11 90.8 13.4 54 148-201 77-141 (361)
196 COG2607 Predicted ATPase (AAA+ 98.6 1.7E-06 3.6E-11 83.4 14.6 149 136-318 72-246 (287)
197 PRK08699 DNA polymerase III su 98.6 3.4E-07 7.4E-12 92.7 10.5 134 147-309 19-183 (325)
198 PF13177 DNA_pol3_delta2: DNA 98.5 1.3E-06 2.7E-11 79.8 10.9 118 147-295 17-157 (162)
199 PF00910 RNA_helicase: RNA hel 98.5 4.5E-07 9.7E-12 77.0 6.9 105 152-277 1-107 (107)
200 PF03215 Rad17: Rad17 cell cyc 98.4 2.9E-06 6.4E-11 90.9 13.8 46 136-181 30-77 (519)
201 TIGR02974 phageshock_pspF psp 98.4 9.2E-07 2E-11 89.7 8.6 133 149-304 22-176 (329)
202 PF03969 AFG1_ATPase: AFG1-lik 98.3 7.4E-07 1.6E-11 91.5 6.8 32 144-175 57-88 (362)
203 PF13401 AAA_22: AAA domain; P 98.3 1.3E-06 2.9E-11 75.1 7.2 77 149-225 4-100 (131)
204 PRK11608 pspF phage shock prot 98.3 2E-06 4.3E-11 87.1 9.1 133 149-304 29-183 (326)
205 PHA00729 NTP-binding motif con 98.3 1.3E-06 2.9E-11 83.9 7.0 27 150-176 18-44 (226)
206 cd01120 RecA-like_NTPases RecA 98.3 5.1E-06 1.1E-10 73.0 10.1 115 152-282 2-141 (165)
207 PF13173 AAA_14: AAA domain 98.3 4.9E-06 1.1E-10 72.5 9.7 69 150-224 3-73 (128)
208 TIGR01817 nifA Nif-specific re 98.3 2.3E-06 4.9E-11 92.0 8.8 133 148-303 218-372 (534)
209 PRK10820 DNA-binding transcrip 98.3 7.8E-06 1.7E-10 87.8 12.7 186 113-331 201-422 (520)
210 PF12775 AAA_7: P-loop contain 98.2 7.2E-07 1.6E-11 88.2 3.8 152 134-311 23-193 (272)
211 PF06068 TIP49: TIP49 C-termin 98.2 1E-06 2.2E-11 89.9 4.9 56 148-204 49-106 (398)
212 KOG0991 Replication factor C, 98.2 3.9E-06 8.4E-11 80.8 8.2 141 151-325 50-201 (333)
213 PRK11388 DNA-binding transcrip 98.2 4.5E-06 9.8E-11 91.6 9.6 132 149-304 348-499 (638)
214 KOG1514 Origin recognition com 98.2 9.7E-06 2.1E-10 87.8 11.5 136 151-314 424-592 (767)
215 PF05729 NACHT: NACHT domain 98.2 2.5E-05 5.5E-10 69.1 12.1 144 151-313 2-165 (166)
216 TIGR00368 Mg chelatase-related 98.2 3.3E-06 7.2E-11 90.1 7.5 24 149-172 211-234 (499)
217 KOG1968 Replication factor C, 98.1 4.3E-06 9.3E-11 94.0 7.5 154 151-334 359-526 (871)
218 PRK05022 anaerobic nitric oxid 98.1 3.1E-06 6.8E-11 90.6 6.2 134 148-304 209-364 (509)
219 TIGR02329 propionate_PrpR prop 98.1 1.1E-05 2.5E-10 86.6 10.1 135 149-304 235-390 (526)
220 PHA02624 large T antigen; Prov 98.1 3.3E-05 7.1E-10 83.4 13.0 141 144-305 426-568 (647)
221 PHA02774 E1; Provisional 98.1 2.1E-05 4.6E-10 84.5 11.3 117 134-284 421-539 (613)
222 PRK15429 formate hydrogenlyase 98.1 1.1E-05 2.3E-10 89.4 9.3 133 149-305 399-554 (686)
223 COG3829 RocR Transcriptional r 98.1 8.4E-06 1.8E-10 86.4 7.7 158 111-303 240-422 (560)
224 PF05621 TniB: Bacterial TniB 98.1 0.00012 2.6E-09 73.1 15.5 203 135-367 47-284 (302)
225 PTZ00111 DNA replication licen 98.1 6.7E-06 1.4E-10 92.3 7.3 137 151-306 494-652 (915)
226 KOG2035 Replication factor C, 98.1 0.00016 3.5E-09 71.3 15.9 140 151-317 36-205 (351)
227 PF00931 NB-ARC: NB-ARC domain 98.0 0.00014 3.1E-09 70.9 15.3 26 147-172 17-42 (287)
228 PRK15424 propionate catabolism 98.0 1.1E-05 2.4E-10 86.9 7.9 133 148-304 241-405 (538)
229 COG1221 PspF Transcriptional r 98.0 3.6E-06 7.8E-11 87.1 3.6 132 149-303 101-252 (403)
230 TIGR02237 recomb_radB DNA repa 98.0 4.3E-05 9.3E-10 71.7 10.6 82 144-226 7-111 (209)
231 KOG1970 Checkpoint RAD17-RFC c 98.0 6.3E-05 1.4E-09 79.8 12.5 55 126-181 78-142 (634)
232 PRK09862 putative ATP-dependen 98.0 1.9E-05 4E-10 84.4 8.5 25 149-173 210-234 (506)
233 KOG1051 Chaperone HSP104 and r 98.0 7.2E-05 1.6E-09 84.0 13.3 112 147-279 589-712 (898)
234 COG1239 ChlI Mg-chelatase subu 98.0 8.8E-05 1.9E-09 76.7 12.7 146 150-313 39-234 (423)
235 PF01637 Arch_ATPase: Archaeal 98.0 0.00019 4.2E-09 66.9 13.9 26 148-173 19-44 (234)
236 PF06309 Torsin: Torsin; Inte 98.0 8.9E-05 1.9E-09 65.2 10.7 44 130-173 34-77 (127)
237 PLN03210 Resistant to P. syrin 97.9 0.00044 9.5E-09 81.1 19.7 31 146-176 204-234 (1153)
238 cd01124 KaiC KaiC is a circadi 97.9 0.00011 2.3E-09 67.2 11.5 31 152-182 2-35 (187)
239 PRK07132 DNA polymerase III su 97.9 0.00024 5.2E-09 71.3 14.7 130 147-309 16-160 (299)
240 KOG2170 ATPase of the AAA+ sup 97.9 3.6E-05 7.8E-10 76.5 8.2 93 130-225 91-191 (344)
241 PRK15115 response regulator Gl 97.9 2E-05 4.4E-10 82.2 6.5 132 149-304 157-311 (444)
242 PRK05917 DNA polymerase III su 97.9 4.8E-05 1E-09 75.9 8.8 124 145-296 15-151 (290)
243 KOG0990 Replication factor C, 97.9 2.5E-05 5.4E-10 78.2 6.6 134 151-315 64-207 (360)
244 PF00493 MCM: MCM2/3/5 family 97.9 1.6E-05 3.6E-10 80.6 5.4 135 149-312 57-222 (331)
245 PF14532 Sigma54_activ_2: Sigm 97.8 3.6E-05 7.9E-10 67.9 6.6 60 149-226 21-83 (138)
246 PF13207 AAA_17: AAA domain; P 97.8 1.5E-05 3.2E-10 67.9 4.0 31 152-182 2-32 (121)
247 COG1618 Predicted nucleotide k 97.8 0.00017 3.7E-09 65.9 10.4 28 147-174 3-30 (179)
248 PRK09361 radB DNA repair and r 97.8 6.9E-05 1.5E-09 71.2 8.2 40 144-183 18-60 (225)
249 KOG2227 Pre-initiation complex 97.8 0.00032 6.9E-09 73.4 13.5 171 134-331 159-364 (529)
250 PRK07276 DNA polymerase III su 97.8 0.0024 5.2E-08 63.9 19.0 132 147-308 22-172 (290)
251 PF12774 AAA_6: Hydrolytic ATP 97.8 0.0003 6.4E-09 68.1 12.1 140 148-307 31-176 (231)
252 PRK10923 glnG nitrogen regulat 97.8 3.8E-05 8.3E-10 80.8 6.5 133 149-304 161-315 (469)
253 TIGR02012 tigrfam_recA protein 97.8 0.00019 4.1E-09 72.7 11.1 84 144-227 50-148 (321)
254 PRK09376 rho transcription ter 97.8 6.2E-05 1.3E-09 77.9 7.7 75 151-225 171-269 (416)
255 PRK00131 aroK shikimate kinase 97.8 3E-05 6.6E-10 69.7 4.8 34 147-180 2-35 (175)
256 COG1485 Predicted ATPase [Gene 97.7 0.00013 2.8E-09 74.0 9.3 107 146-283 62-177 (367)
257 PF13671 AAA_33: AAA domain; P 97.7 4.7E-05 1E-09 66.5 5.5 32 152-185 2-33 (143)
258 PRK11361 acetoacetate metaboli 97.7 7.6E-05 1.6E-09 78.1 8.0 132 149-304 166-320 (457)
259 PRK08118 topology modulation p 97.7 9E-05 1.9E-09 67.9 7.3 32 151-182 3-34 (167)
260 TIGR02915 PEP_resp_reg putativ 97.7 7.1E-05 1.5E-09 78.2 7.4 134 149-305 162-317 (445)
261 KOG2680 DNA helicase TIP49, TB 97.7 0.00032 7E-09 69.9 11.4 40 148-187 65-106 (454)
262 PRK11823 DNA repair protein Ra 97.7 0.00015 3.2E-09 76.6 9.6 79 144-226 75-170 (446)
263 cd01128 rho_factor Transcripti 97.7 0.00015 3.3E-09 70.9 8.9 77 148-224 15-115 (249)
264 cd00983 recA RecA is a bacter 97.7 0.00032 6.9E-09 71.1 11.3 84 144-227 50-148 (325)
265 PF03266 NTPase_1: NTPase; In 97.6 3.1E-05 6.7E-10 71.3 2.6 22 152-173 2-23 (168)
266 KOG1942 DNA helicase, TBP-inte 97.6 6.5E-05 1.4E-09 74.6 4.5 56 149-205 64-121 (456)
267 PRK07261 topology modulation p 97.6 0.0002 4.4E-09 65.7 7.4 41 151-191 2-42 (171)
268 PRK13947 shikimate kinase; Pro 97.6 0.00024 5.3E-09 64.3 7.8 41 151-193 3-43 (171)
269 cd01394 radB RadB. The archaea 97.6 0.00059 1.3E-08 64.4 10.6 40 144-183 14-56 (218)
270 PRK13695 putative NTPase; Prov 97.6 0.00045 9.8E-09 63.1 9.5 23 151-173 2-24 (174)
271 cd03283 ABC_MutS-like MutS-lik 97.6 0.00056 1.2E-08 64.5 10.3 23 150-172 26-48 (199)
272 PRK05818 DNA polymerase III su 97.6 0.00055 1.2E-08 67.3 10.5 122 147-296 5-144 (261)
273 PRK08533 flagellar accessory p 97.5 0.00056 1.2E-08 65.9 10.1 38 145-182 20-60 (230)
274 TIGR02688 conserved hypothetic 97.5 0.00019 4.2E-09 74.9 7.1 66 146-225 206-273 (449)
275 TIGR00764 lon_rel lon-related 97.5 9.8E-05 2.1E-09 80.8 5.2 83 121-204 9-102 (608)
276 PRK09354 recA recombinase A; P 97.5 0.00081 1.8E-08 68.8 11.3 83 144-226 55-152 (349)
277 PRK06762 hypothetical protein; 97.5 0.00018 3.9E-09 65.0 6.0 38 149-186 2-39 (166)
278 PRK06067 flagellar accessory p 97.5 0.0002 4.4E-09 68.6 6.6 82 144-225 20-133 (234)
279 COG2204 AtoC Response regulato 97.5 0.00025 5.3E-09 74.9 7.6 109 148-278 163-286 (464)
280 cd01121 Sms Sms (bacterial rad 97.5 0.00044 9.6E-09 71.4 9.3 79 144-226 77-172 (372)
281 cd00227 CPT Chloramphenicol (C 97.5 0.00025 5.5E-09 64.9 6.7 34 149-182 2-35 (175)
282 TIGR01618 phage_P_loop phage n 97.5 0.00013 2.9E-09 70.0 4.9 24 148-171 11-34 (220)
283 TIGR01818 ntrC nitrogen regula 97.5 3.9E-05 8.4E-10 80.5 1.3 132 149-303 157-310 (463)
284 PRK03839 putative kinase; Prov 97.5 0.00011 2.3E-09 67.5 4.0 31 151-181 2-32 (180)
285 PLN02200 adenylate kinase fami 97.4 0.00015 3.3E-09 70.1 4.9 41 144-186 38-78 (234)
286 cd00464 SK Shikimate kinase (S 97.4 0.00014 3.1E-09 64.3 4.2 30 152-181 2-31 (154)
287 KOG0478 DNA replication licens 97.4 0.00043 9.3E-09 75.1 8.5 132 148-301 461-616 (804)
288 KOG3347 Predicted nucleotide k 97.4 0.00012 2.7E-09 66.0 3.4 33 150-182 8-40 (176)
289 cd02021 GntK Gluconate kinase 97.4 0.00064 1.4E-08 60.2 8.0 28 152-179 2-29 (150)
290 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00015 3.2E-09 66.4 4.0 33 152-186 2-34 (183)
291 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00082 1.8E-08 64.0 9.2 81 144-225 14-128 (235)
292 PRK14531 adenylate kinase; Pro 97.4 0.00019 4.2E-09 66.3 4.6 30 150-179 3-32 (183)
293 cd03281 ABC_MSH5_euk MutS5 hom 97.4 0.0021 4.6E-08 61.2 11.7 23 149-171 29-51 (213)
294 COG3604 FhlA Transcriptional r 97.4 0.00011 2.5E-09 77.2 3.2 132 147-303 244-399 (550)
295 PRK14532 adenylate kinase; Pro 97.4 0.00016 3.6E-09 66.7 3.9 29 151-179 2-30 (188)
296 cd01131 PilT Pilus retraction 97.4 0.00039 8.4E-09 65.3 6.5 24 151-174 3-26 (198)
297 cd01393 recA_like RecA is a b 97.3 0.0014 3E-08 62.1 10.0 30 144-173 14-43 (226)
298 PRK00625 shikimate kinase; Pro 97.3 0.00021 4.6E-09 66.1 4.3 31 151-181 2-32 (173)
299 PRK08233 hypothetical protein; 97.3 0.00092 2E-08 60.7 8.5 32 149-180 3-35 (182)
300 PRK10365 transcriptional regul 97.3 0.00056 1.2E-08 71.2 7.8 132 149-304 162-316 (441)
301 TIGR02858 spore_III_AA stage I 97.3 0.00052 1.1E-08 67.9 7.0 25 150-174 112-136 (270)
302 PF06745 KaiC: KaiC; InterPro 97.3 0.00084 1.8E-08 63.8 8.1 81 144-224 14-127 (226)
303 TIGR01313 therm_gnt_kin carboh 97.3 0.00074 1.6E-08 60.8 7.2 28 152-179 1-28 (163)
304 PRK13948 shikimate kinase; Pro 97.3 0.0006 1.3E-08 63.6 6.7 35 147-181 8-42 (182)
305 cd03238 ABC_UvrA The excision 97.3 0.0028 6E-08 58.8 11.0 27 146-172 18-44 (176)
306 cd02020 CMPK Cytidine monophos 97.3 0.00026 5.6E-09 61.9 3.9 30 152-181 2-31 (147)
307 cd01428 ADK Adenylate kinase ( 97.3 0.00025 5.5E-09 65.2 4.0 28 152-179 2-29 (194)
308 PF05707 Zot: Zonular occluden 97.3 0.00068 1.5E-08 63.4 6.9 121 151-296 2-142 (193)
309 cd00984 DnaB_C DnaB helicase C 97.3 0.0031 6.7E-08 60.3 11.6 38 145-182 9-50 (242)
310 KOG2383 Predicted ATPase [Gene 97.3 0.00077 1.7E-08 69.4 7.7 26 147-172 112-137 (467)
311 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0023 5E-08 62.8 10.6 40 144-183 31-73 (259)
312 cd02027 APSK Adenosine 5'-phos 97.2 0.00094 2E-08 59.9 7.2 34 152-185 2-38 (149)
313 PRK13406 bchD magnesium chelat 97.2 0.0069 1.5E-07 66.2 15.2 129 150-296 26-165 (584)
314 PHA02530 pseT polynucleotide k 97.2 0.00088 1.9E-08 66.3 7.7 36 149-185 2-37 (300)
315 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0011 2.5E-08 63.8 8.3 39 144-182 16-57 (237)
316 PRK13946 shikimate kinase; Pro 97.2 0.0007 1.5E-08 62.7 6.5 34 148-181 9-42 (184)
317 PRK09519 recA DNA recombinatio 97.2 0.0012 2.7E-08 73.8 9.4 83 144-226 55-152 (790)
318 PRK13949 shikimate kinase; Pro 97.2 0.00031 6.7E-09 64.5 4.0 31 151-181 3-33 (169)
319 PTZ00088 adenylate kinase 1; P 97.2 0.00039 8.5E-09 67.1 4.8 33 148-180 5-37 (229)
320 TIGR00767 rho transcription te 97.2 0.0011 2.5E-08 68.9 8.4 76 150-225 169-268 (415)
321 PRK14527 adenylate kinase; Pro 97.2 0.00033 7.1E-09 65.1 3.9 33 147-179 4-36 (191)
322 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0038 8.3E-08 57.1 10.8 74 151-224 4-107 (159)
323 COG5271 MDN1 AAA ATPase contai 97.2 0.0026 5.6E-08 74.8 11.5 146 148-313 1542-1705(4600)
324 COG0563 Adk Adenylate kinase a 97.2 0.00034 7.4E-09 65.0 3.9 33 151-185 2-34 (178)
325 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00039 8.5E-09 63.5 4.3 29 151-179 5-33 (188)
326 PRK06547 hypothetical protein; 97.2 0.00041 8.9E-09 64.1 4.4 34 147-180 13-46 (172)
327 PRK05973 replicative DNA helic 97.2 0.0058 1.2E-07 59.5 12.4 40 144-183 59-101 (237)
328 PRK04040 adenylate kinase; Pro 97.2 0.00043 9.3E-09 64.8 4.4 30 149-178 2-33 (188)
329 PRK06696 uridine kinase; Valid 97.1 0.001 2.2E-08 63.5 7.0 53 133-186 7-62 (223)
330 COG3854 SpoIIIAA ncharacterize 97.1 0.00085 1.8E-08 64.9 6.3 73 150-222 138-228 (308)
331 PRK05800 cobU adenosylcobinami 97.1 0.0025 5.5E-08 58.7 9.3 34 151-184 3-36 (170)
332 PRK14530 adenylate kinase; Pro 97.1 0.00043 9.3E-09 65.6 4.3 30 151-180 5-34 (215)
333 PRK06217 hypothetical protein; 97.1 0.00043 9.3E-09 63.9 4.1 31 151-181 3-33 (183)
334 PF13521 AAA_28: AAA domain; P 97.1 0.00058 1.3E-08 61.6 4.9 27 152-179 2-28 (163)
335 TIGR02236 recomb_radA DNA repa 97.1 0.0016 3.4E-08 65.3 8.5 41 144-184 90-139 (310)
336 TIGR00416 sms DNA repair prote 97.1 0.0053 1.1E-07 65.1 12.7 83 144-226 89-184 (454)
337 KOG0480 DNA replication licens 97.1 0.00047 1E-08 74.4 4.7 142 150-311 379-542 (764)
338 cd00544 CobU Adenosylcobinamid 97.1 0.0024 5.3E-08 58.8 8.9 33 152-184 2-34 (169)
339 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0011 2.4E-08 64.1 7.0 34 152-185 2-38 (249)
340 PRK04301 radA DNA repair and r 97.1 0.0031 6.7E-08 63.5 10.3 30 144-173 97-126 (317)
341 COG1241 MCM2 Predicted ATPase 97.1 0.00042 9.1E-09 76.2 4.2 136 150-306 320-478 (682)
342 cd01122 GP4d_helicase GP4d_hel 97.1 0.0024 5.2E-08 62.3 9.1 38 145-182 26-67 (271)
343 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.0045 9.7E-08 58.8 10.8 40 144-183 11-53 (224)
344 PRK02496 adk adenylate kinase; 97.1 0.0005 1.1E-08 63.3 4.0 30 151-180 3-32 (184)
345 PRK04296 thymidine kinase; Pro 97.1 0.0017 3.7E-08 60.7 7.6 70 150-222 3-88 (190)
346 COG1102 Cmk Cytidylate kinase 97.1 0.00044 9.5E-09 63.3 3.5 28 152-179 3-30 (179)
347 PRK05537 bifunctional sulfate 97.1 0.0031 6.7E-08 68.7 10.5 98 121-221 365-473 (568)
348 PRK14528 adenylate kinase; Pro 97.1 0.00061 1.3E-08 63.4 4.3 30 151-180 3-32 (186)
349 PLN03187 meiotic recombination 97.0 0.0049 1.1E-07 63.1 11.1 28 145-172 122-149 (344)
350 TIGR01351 adk adenylate kinase 97.0 0.00056 1.2E-08 64.6 3.9 28 152-179 2-29 (210)
351 PRK12608 transcription termina 97.0 0.0014 2.9E-08 67.7 6.7 75 151-225 135-233 (380)
352 smart00534 MUTSac ATPase domai 97.0 0.0069 1.5E-07 56.2 10.9 19 152-170 2-20 (185)
353 PRK00279 adk adenylate kinase; 97.0 0.00066 1.4E-08 64.3 4.2 29 151-179 2-30 (215)
354 cd03243 ABC_MutS_homologs The 97.0 0.0062 1.3E-07 57.1 10.7 23 149-171 29-51 (202)
355 PRK03731 aroL shikimate kinase 97.0 0.00078 1.7E-08 61.1 4.4 30 151-180 4-33 (171)
356 COG1936 Predicted nucleotide k 97.0 0.00054 1.2E-08 63.3 3.3 30 151-181 2-31 (180)
357 TIGR02238 recomb_DMC1 meiotic 97.0 0.0034 7.3E-08 63.5 9.2 28 144-171 91-118 (313)
358 PF13245 AAA_19: Part of AAA d 97.0 0.0013 2.8E-08 52.7 4.9 34 150-183 11-51 (76)
359 TIGR01420 pilT_fam pilus retra 97.0 0.0017 3.7E-08 66.2 7.0 68 150-221 123-204 (343)
360 PF08433 KTI12: Chromatin asso 97.0 0.0022 4.8E-08 63.5 7.5 73 151-224 3-82 (270)
361 PF05272 VirE: Virulence-assoc 96.9 0.0035 7.7E-08 59.3 8.4 30 143-172 46-75 (198)
362 TIGR00150 HI0065_YjeE ATPase, 96.9 0.002 4.3E-08 57.3 6.3 30 147-176 20-49 (133)
363 PRK08154 anaerobic benzoate ca 96.9 0.0018 3.8E-08 65.2 6.6 57 124-181 108-165 (309)
364 COG0703 AroK Shikimate kinase 96.9 0.0012 2.7E-08 61.0 5.0 32 150-181 3-34 (172)
365 cd03216 ABC_Carb_Monos_I This 96.9 0.0054 1.2E-07 55.7 9.2 28 146-173 23-50 (163)
366 PRK05057 aroK shikimate kinase 96.9 0.001 2.3E-08 61.1 4.5 34 149-182 4-37 (172)
367 PF00406 ADK: Adenylate kinase 96.9 0.00068 1.5E-08 60.4 3.0 31 154-186 1-31 (151)
368 PRK01184 hypothetical protein; 96.9 0.00098 2.1E-08 61.3 4.2 30 150-180 2-31 (184)
369 PF06414 Zeta_toxin: Zeta toxi 96.9 0.004 8.7E-08 58.3 8.3 44 146-189 12-56 (199)
370 cd03115 SRP The signal recogni 96.9 0.0044 9.6E-08 56.3 8.3 33 151-183 2-37 (173)
371 PRK04182 cytidylate kinase; Pr 96.9 0.001 2.2E-08 60.2 4.1 29 151-179 2-30 (180)
372 PLN02674 adenylate kinase 96.9 0.001 2.3E-08 64.9 4.3 37 147-185 29-65 (244)
373 PF01583 APS_kinase: Adenylyls 96.9 0.0045 9.8E-08 56.5 8.1 41 149-189 2-45 (156)
374 COG4619 ABC-type uncharacteriz 96.9 0.0039 8.4E-08 57.9 7.5 26 147-172 27-52 (223)
375 COG4650 RtcR Sigma54-dependent 96.8 0.0018 4E-08 64.5 5.8 71 148-224 207-294 (531)
376 PF13191 AAA_16: AAA ATPase do 96.8 0.0015 3.2E-08 59.1 4.9 40 144-183 19-61 (185)
377 cd03284 ABC_MutS1 MutS1 homolo 96.8 0.006 1.3E-07 58.3 9.2 22 150-171 31-52 (216)
378 cd00046 DEXDc DEAD-like helica 96.8 0.0013 2.9E-08 55.2 4.2 25 150-174 1-25 (144)
379 PF01078 Mg_chelatase: Magnesi 96.8 0.00089 1.9E-08 63.7 3.3 25 149-173 22-46 (206)
380 PF13238 AAA_18: AAA domain; P 96.8 0.00094 2E-08 56.7 3.2 22 152-173 1-22 (129)
381 PTZ00035 Rad51 protein; Provis 96.8 0.0075 1.6E-07 61.6 10.3 30 144-173 113-142 (337)
382 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.011 2.3E-07 55.5 10.5 22 150-171 29-50 (200)
383 PRK09302 circadian clock prote 96.8 0.0056 1.2E-07 65.6 9.7 82 144-225 26-143 (509)
384 cd01130 VirB11-like_ATPase Typ 96.8 0.004 8.6E-08 57.8 7.5 27 148-174 24-50 (186)
385 PRK14526 adenylate kinase; Pro 96.8 0.0012 2.6E-08 63.0 4.0 32 152-185 3-34 (211)
386 PF13086 AAA_11: AAA domain; P 96.8 0.00095 2.1E-08 62.1 3.3 23 151-173 19-41 (236)
387 PF13604 AAA_30: AAA domain; P 96.8 0.0047 1E-07 58.0 7.8 35 149-183 18-55 (196)
388 PRK15455 PrkA family serine pr 96.8 0.0022 4.9E-08 69.4 6.0 35 148-182 102-137 (644)
389 PRK12339 2-phosphoglycerate ki 96.7 0.0015 3.2E-08 61.7 4.2 31 148-178 2-32 (197)
390 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0014 3E-08 59.0 3.8 29 151-179 2-30 (171)
391 cd00267 ABC_ATPase ABC (ATP-bi 96.7 0.0091 2E-07 53.4 9.1 28 147-174 23-50 (157)
392 TIGR01526 nadR_NMN_Atrans nico 96.7 0.0029 6.2E-08 64.3 6.5 71 149-220 162-240 (325)
393 TIGR02782 TrbB_P P-type conjug 96.7 0.0021 4.5E-08 64.5 5.4 70 148-221 131-213 (299)
394 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.015 3.2E-07 55.1 10.9 25 148-172 28-52 (204)
395 PF05970 PIF1: PIF1-like helic 96.7 0.0019 4.1E-08 66.4 5.1 40 147-186 20-62 (364)
396 COG2074 2-phosphoglycerate kin 96.7 0.0029 6.4E-08 61.8 6.1 52 128-179 65-119 (299)
397 PRK14722 flhF flagellar biosyn 96.7 0.0021 4.6E-08 66.4 5.4 28 146-173 134-161 (374)
398 TIGR01613 primase_Cterm phage/ 96.7 0.011 2.3E-07 59.2 10.4 70 144-224 71-140 (304)
399 PRK04328 hypothetical protein; 96.7 0.0027 5.9E-08 61.8 5.8 38 144-181 18-58 (249)
400 TIGR02525 plasmid_TraJ plasmid 96.7 0.0035 7.6E-08 64.8 6.8 67 151-221 151-234 (372)
401 PF04665 Pox_A32: Poxvirus A32 96.7 0.038 8.2E-07 53.9 13.5 137 146-311 10-170 (241)
402 PLN02459 probable adenylate ki 96.7 0.0022 4.9E-08 63.1 5.0 32 148-179 28-59 (261)
403 PRK13764 ATPase; Provisional 96.7 0.003 6.5E-08 69.0 6.4 27 148-174 256-282 (602)
404 COG1373 Predicted ATPase (AAA+ 96.6 0.028 6.1E-07 58.6 13.2 79 139-224 28-106 (398)
405 PRK05986 cob(I)alamin adenolsy 96.6 0.015 3.2E-07 54.8 10.0 75 150-224 23-127 (191)
406 PRK03846 adenylylsulfate kinas 96.6 0.0078 1.7E-07 56.3 8.2 39 147-185 22-63 (198)
407 TIGR02239 recomb_RAD51 DNA rep 96.6 0.0078 1.7E-07 60.9 8.7 29 144-172 91-119 (316)
408 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0097 2.1E-07 55.2 8.6 76 146-224 22-101 (177)
409 PRK04220 2-phosphoglycerate ki 96.6 0.003 6.5E-08 63.4 5.5 33 145-177 88-120 (301)
410 TIGR00455 apsK adenylylsulfate 96.6 0.0072 1.6E-07 55.6 7.7 40 147-186 16-58 (184)
411 PRK12338 hypothetical protein; 96.6 0.0022 4.7E-08 64.9 4.5 31 148-178 3-33 (319)
412 PF00448 SRP54: SRP54-type pro 96.6 0.0076 1.7E-07 56.8 7.9 34 149-182 1-37 (196)
413 PRK05541 adenylylsulfate kinas 96.6 0.0021 4.5E-08 58.7 4.0 28 147-174 5-32 (176)
414 PLN03186 DNA repair protein RA 96.6 0.0096 2.1E-07 60.9 9.1 28 145-172 119-146 (342)
415 cd03228 ABCC_MRP_Like The MRP 96.6 0.0079 1.7E-07 54.8 7.6 28 146-173 25-52 (171)
416 cd02019 NK Nucleoside/nucleoti 96.6 0.0024 5.2E-08 49.8 3.6 31 152-182 2-33 (69)
417 TIGR01425 SRP54_euk signal rec 96.6 0.018 3.9E-07 60.7 11.2 36 148-183 99-137 (429)
418 PRK05480 uridine/cytidine kina 96.5 0.0035 7.7E-08 58.9 5.2 36 147-182 4-40 (209)
419 PRK00889 adenylylsulfate kinas 96.5 0.0084 1.8E-07 54.7 7.5 37 148-184 3-42 (175)
420 COG0606 Predicted ATPase with 96.5 0.0014 3E-08 69.1 2.6 45 125-172 175-221 (490)
421 PRK04841 transcriptional regul 96.5 0.064 1.4E-06 60.8 16.2 32 148-180 31-62 (903)
422 PRK00300 gmk guanylate kinase; 96.5 0.012 2.6E-07 54.8 8.6 28 147-174 3-30 (205)
423 PRK14974 cell division protein 96.5 0.0095 2.1E-07 60.8 8.4 35 148-182 139-176 (336)
424 PF07693 KAP_NTPase: KAP famil 96.5 0.037 8E-07 55.1 12.6 37 140-176 11-47 (325)
425 cd03230 ABC_DR_subfamily_A Thi 96.5 0.014 2.9E-07 53.4 8.7 27 147-173 24-50 (173)
426 KOG0477 DNA replication licens 96.5 0.0063 1.4E-07 65.8 7.2 144 150-313 483-652 (854)
427 PRK14529 adenylate kinase; Pro 96.5 0.0022 4.8E-08 61.8 3.5 34 151-186 2-35 (223)
428 PRK13975 thymidylate kinase; P 96.5 0.0049 1.1E-07 56.9 5.8 28 150-177 3-30 (196)
429 PF01443 Viral_helicase1: Vira 96.5 0.00099 2.1E-08 63.0 1.1 22 152-173 1-22 (234)
430 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.0073 1.6E-07 53.8 6.6 28 146-173 23-50 (144)
431 cd03227 ABC_Class2 ABC-type Cl 96.5 0.017 3.6E-07 52.4 9.1 25 149-173 21-45 (162)
432 PRK00771 signal recognition pa 96.5 0.02 4.3E-07 60.5 10.8 37 147-183 93-132 (437)
433 PRK13900 type IV secretion sys 96.5 0.0046 9.9E-08 63.0 5.8 70 148-221 159-244 (332)
434 KOG1051 Chaperone HSP104 and r 96.5 0.0082 1.8E-07 67.9 8.2 136 150-311 209-363 (898)
435 PRK14737 gmk guanylate kinase; 96.4 0.0036 7.8E-08 58.5 4.6 26 148-173 3-28 (186)
436 TIGR00064 ftsY signal recognit 96.4 0.014 3E-07 57.9 8.9 36 147-182 70-108 (272)
437 PF01745 IPT: Isopentenyl tran 96.4 0.0039 8.4E-08 59.7 4.7 39 151-189 3-41 (233)
438 PLN02199 shikimate kinase 96.4 0.0067 1.5E-07 60.8 6.5 33 149-181 102-134 (303)
439 cd03246 ABCC_Protease_Secretio 96.4 0.025 5.4E-07 51.6 9.9 27 147-173 26-52 (173)
440 TIGR00708 cobA cob(I)alamin ad 96.4 0.012 2.7E-07 54.5 7.8 73 151-223 7-108 (173)
441 TIGR02788 VirB11 P-type DNA tr 96.4 0.0055 1.2E-07 61.6 5.9 73 146-222 141-228 (308)
442 PF14516 AAA_35: AAA-like doma 96.4 0.26 5.7E-06 50.0 18.1 39 149-187 31-72 (331)
443 COG3284 AcoR Transcriptional a 96.4 0.0064 1.4E-07 65.9 6.5 166 151-335 338-529 (606)
444 COG1066 Sms Predicted ATP-depe 96.4 0.024 5.3E-07 58.9 10.4 102 145-250 89-207 (456)
445 PRK10867 signal recognition pa 96.4 0.013 2.8E-07 61.8 8.5 37 147-183 98-138 (433)
446 PF00437 T2SE: Type II/IV secr 96.3 0.0059 1.3E-07 59.6 5.7 72 147-222 125-207 (270)
447 cd03214 ABC_Iron-Siderophores_ 96.3 0.029 6.2E-07 51.6 9.9 28 146-173 22-49 (180)
448 cd00071 GMPK Guanosine monopho 96.3 0.017 3.6E-07 51.1 7.9 25 152-176 2-26 (137)
449 PRK08099 bifunctional DNA-bind 96.3 0.0077 1.7E-07 62.9 6.5 31 149-179 219-249 (399)
450 COG5271 MDN1 AAA ATPase contai 96.3 0.053 1.2E-06 64.6 13.3 162 152-333 891-1066(4600)
451 cd03213 ABCG_EPDR ABCG transpo 96.3 0.023 4.9E-07 53.0 9.0 28 146-173 32-59 (194)
452 COG2274 SunT ABC-type bacterio 96.3 0.0094 2E-07 66.5 7.2 26 147-172 497-522 (709)
453 PRK05439 pantothenate kinase; 96.2 0.0069 1.5E-07 61.2 5.6 39 136-174 73-111 (311)
454 cd02022 DPCK Dephospho-coenzym 96.2 0.0047 1E-07 56.9 4.0 28 152-180 2-29 (179)
455 COG4088 Predicted nucleotide k 96.2 0.0094 2E-07 56.9 6.0 24 151-174 3-26 (261)
456 PRK10078 ribose 1,5-bisphospho 96.2 0.0047 1E-07 57.2 4.0 29 150-178 3-31 (186)
457 PRK13808 adenylate kinase; Pro 96.2 0.0044 9.4E-08 63.2 3.9 33 152-186 3-35 (333)
458 TIGR03499 FlhF flagellar biosy 96.2 0.017 3.7E-07 57.4 8.0 37 148-184 193-234 (282)
459 TIGR00235 udk uridine kinase. 96.2 0.0046 1E-07 58.2 3.7 28 148-175 5-32 (207)
460 COG3283 TyrR Transcriptional r 96.2 0.012 2.5E-07 60.3 6.7 119 131-278 214-344 (511)
461 PRK13833 conjugal transfer pro 96.2 0.0081 1.8E-07 61.0 5.7 69 149-221 144-224 (323)
462 KOG2543 Origin recognition com 96.2 0.11 2.4E-06 53.7 13.7 50 135-184 16-65 (438)
463 PF00485 PRK: Phosphoribulokin 96.2 0.0045 9.7E-08 57.7 3.5 25 151-175 1-25 (194)
464 PRK13851 type IV secretion sys 96.1 0.0069 1.5E-07 62.0 5.1 71 147-221 160-245 (344)
465 TIGR02655 circ_KaiC circadian 96.1 0.013 2.9E-07 62.5 7.5 41 144-184 258-301 (484)
466 COG0467 RAD55 RecA-superfamily 96.1 0.0078 1.7E-07 58.7 5.2 40 144-183 18-60 (260)
467 PRK08356 hypothetical protein; 96.1 0.0063 1.4E-07 56.8 4.4 32 150-184 6-37 (195)
468 TIGR02322 phosphon_PhnN phosph 96.1 0.0049 1.1E-07 56.3 3.5 25 151-175 3-27 (179)
469 TIGR00017 cmk cytidylate kinas 96.1 0.0062 1.3E-07 58.3 4.3 30 150-179 3-32 (217)
470 COG4178 ABC-type uncharacteriz 96.1 0.027 5.8E-07 61.5 9.5 28 145-172 415-442 (604)
471 COG5245 DYN1 Dynein, heavy cha 96.1 0.03 6.4E-07 65.9 10.1 174 147-342 1492-1689(3164)
472 cd02028 UMPK_like Uridine mono 96.1 0.0065 1.4E-07 56.2 4.2 34 152-185 2-38 (179)
473 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.064 1.4E-06 51.6 11.2 25 147-171 29-53 (222)
474 cd01125 repA Hexameric Replica 96.1 0.11 2.4E-06 49.9 12.8 21 152-172 4-24 (239)
475 KOG0058 Peptide exporter, ABC 96.1 0.018 3.9E-07 63.4 8.1 28 145-172 490-517 (716)
476 TIGR03263 guanyl_kin guanylate 96.1 0.0045 9.8E-08 56.4 3.0 26 150-175 2-27 (180)
477 TIGR00554 panK_bact pantothena 96.0 0.01 2.3E-07 59.4 5.7 37 138-174 51-87 (290)
478 COG0529 CysC Adenylylsulfate k 96.0 0.028 6.1E-07 52.4 8.0 41 147-187 21-64 (197)
479 PF08423 Rad51: Rad51; InterP 96.0 0.021 4.5E-07 56.0 7.8 30 144-173 33-62 (256)
480 PRK13894 conjugal transfer ATP 96.0 0.009 1.9E-07 60.6 5.3 70 148-221 147-228 (319)
481 PF09848 DUF2075: Uncharacteri 96.0 0.0092 2E-07 61.0 5.4 23 151-173 3-25 (352)
482 cd01129 PulE-GspE PulE/GspE Th 96.0 0.0095 2.1E-07 58.7 5.3 68 151-221 82-158 (264)
483 PF02367 UPF0079: Uncharacteri 96.0 0.0071 1.5E-07 53.0 3.9 35 147-181 13-47 (123)
484 cd02024 NRK1 Nicotinamide ribo 96.0 0.0062 1.3E-07 57.1 3.7 28 152-179 2-30 (187)
485 KOG0482 DNA replication licens 96.0 0.0054 1.2E-07 65.0 3.6 137 150-306 376-534 (721)
486 PRK14730 coaE dephospho-CoA ki 96.0 0.0072 1.6E-07 56.8 4.2 29 151-179 3-31 (195)
487 PRK09825 idnK D-gluconate kina 96.0 0.0076 1.6E-07 55.7 4.2 27 150-176 4-30 (176)
488 PRK00023 cmk cytidylate kinase 96.0 0.0065 1.4E-07 58.4 3.9 31 149-179 4-34 (225)
489 PF09439 SRPRB: Signal recogni 96.0 0.023 5E-07 53.1 7.3 23 150-172 4-26 (181)
490 cd02023 UMPK Uridine monophosp 96.0 0.0086 1.9E-07 55.7 4.5 33 152-184 2-35 (198)
491 PRK10416 signal recognition pa 96.0 0.031 6.7E-07 56.7 8.8 36 147-182 112-150 (318)
492 PRK14733 coaE dephospho-CoA ki 96.0 0.0079 1.7E-07 57.2 4.2 32 148-179 5-36 (204)
493 PRK09302 circadian clock prote 96.0 0.029 6.3E-07 60.2 9.1 83 144-226 268-377 (509)
494 PF13481 AAA_25: AAA domain; P 96.0 0.032 6.8E-07 51.2 8.2 24 150-173 33-56 (193)
495 PLN02165 adenylate isopentenyl 95.9 0.0084 1.8E-07 61.1 4.6 33 149-181 43-75 (334)
496 PTZ00202 tuzin; Provisional 95.9 0.057 1.2E-06 57.2 10.7 40 144-183 281-320 (550)
497 COG0645 Predicted kinase [Gene 95.9 0.02 4.4E-07 52.7 6.7 64 150-215 2-80 (170)
498 PRK11174 cysteine/glutathione 95.9 0.039 8.6E-07 59.9 10.0 29 145-173 372-400 (588)
499 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.011 2.5E-07 56.1 5.2 39 144-182 15-56 (229)
500 PRK00091 miaA tRNA delta(2)-is 95.9 0.0093 2E-07 60.2 4.7 35 148-182 3-37 (307)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.9e-96 Score=733.58 Aligned_cols=407 Identities=73% Similarity=1.120 Sum_probs=383.7
Q ss_pred ccCCCccCCCCCCCCCCCccccccchhhhcccCCCCCCCCCceEEehhhhhhcchhhhhhhhhccccccccccccCCCcc
Q 014244 3 AAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGA 82 (428)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~~ 82 (428)
+.+++++++++.+++.|+++|||..+++................+.++.+++||+++++|+++++|.+++|++|++|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~g~g~ 84 (413)
T PLN00020 5 NRASLSLSAVASGASSPPSSAFLGSKVKVSSRRTSSARKSKSSVPVSEEDESKQSEQSSWRGLAQDISGDDYDITRGKGM 84 (413)
T ss_pred cccccccCCCccCCCCCCchhcccccccccccccccccccccccccccccccccccccchhccccccccchhhhhhcCCc
Confidence 45788899999999999999999999988544444455555556777999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcchhhhcccccccccccccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchH
Q 014244 83 VDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGK 162 (428)
Q Consensus 83 ~d~lf~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGK 162 (428)
||+||+|++|.|+|++|+++++|+ .+.++|+|++|+|||+|+|+|+++.|++|||+..+|+++|+|+||||||||||
T Consensus 85 vd~lf~~~~~~g~~~~i~~~~~~~---~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGK 161 (413)
T PLN00020 85 VDSLFQGPFGLGTDSDIASSYDYL---QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGK 161 (413)
T ss_pred hhhhhcCCccCCcchhhhhhhHHH---hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCH
Confidence 999999999999999999999887 67778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHH-HhCCceEEEecccccccCCCCCCcccchhhHHH
Q 014244 163 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 241 (428)
Q Consensus 163 T~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i-~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v 241 (428)
|++|++||+++|++|+.+++++|.++|+||++++||++|+.|.+.+ .+.+||||||||||+++++|+ +++.++++|++
T Consensus 162 TllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~~qiV 240 (413)
T PLN00020 162 SFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG-TTQYTVNNQMV 240 (413)
T ss_pred HHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC-CCCcchHHHHH
Confidence 9999999999999999999999999999999999999999997776 478999999999999999996 56788999999
Q ss_pred HHHHHHhhcCCccccCCCcc-ccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEeCCCHHHHHHHHHHhccCCCCCHhH
Q 014244 242 NATLMNIADNPTCVQLPGMY-NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDD 320 (428)
Q Consensus 242 ~~~L~~lld~~~~v~l~~~~-~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~P~~eeR~~Il~~~~~~~~l~~~~ 320 (428)
.++||+++|+|++|+++|.| ..+...+|+||+|||+|+.|||||+||||||++||+|+.++|.+||+.+++.++++..+
T Consensus 241 ~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~~~d 320 (413)
T PLN00020 241 NGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVSRED 320 (413)
T ss_pred HHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCCCHHH
Confidence 99999999999999999998 45667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCCCCCccCHHHHHHHHHHHHHHHhhhhh
Q 014244 321 IVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 400 (428)
Q Consensus 321 la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~~l~~~~~~~~~f~~~~~~~~~ll~~g~~l~~eq~~v~~ 400 (428)
+.++++.|+|++||||||||+++|+++|++||.++|.|+++++|+++++++|.|++|.+|++.|+++|++|++||++|++
T Consensus 321 v~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~eq~~v~~ 400 (413)
T PLN00020 321 VVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVREQENVKR 400 (413)
T ss_pred HHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCcccc
Q 014244 401 VQLADKYLSEAAL 413 (428)
Q Consensus 401 ~~l~~~~l~~~~l 413 (428)
++|+++||++++|
T Consensus 401 ~~l~~~y~~~~~~ 413 (413)
T PLN00020 401 VQLSDEYLKNAAL 413 (413)
T ss_pred HHHHHHHHHhccC
Confidence 9999999999765
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-61 Score=468.04 Aligned_cols=359 Identities=25% Similarity=0.362 Sum_probs=300.7
Q ss_pred CCCccCCCCCCC-CCC--CccccccchhhhcccCCCCC-CCCCceEEehhhhh----hcchhhhhhhhhccccccccccc
Q 014244 5 VPLSFNGSGAAT-SVP--SSSFFGTSLKKVSSRIPPSK-VPSASFKITAEVDE----NKQTKKDRWKGLAYDESDDQQDI 76 (428)
Q Consensus 5 ~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~w~~~~~~~~~~~~~i 76 (428)
.||..|+++.++ ..+ .+.++++..-|+..-.-+-+ .-.....|...+.+ -|+|++.||- +..+.+.|+++|
T Consensus 14 ~~L~~~~~~~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryv-vg~~~~~D~~~i 92 (388)
T KOG0651|consen 14 KPLLSHRSISSALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYV-VGCRRSVDKEKI 92 (388)
T ss_pred hhhhhccchhhHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEE-EEcccccchhhh
Confidence 367777776665 334 55666665554422221111 11123444433322 2899999999 899999999999
Q ss_pred cCCCccccccccCCCCCCcchhhhcccccccccccccccccCcCCCCCchhhHHHHHHHHHHHhhhCC-CCCCCcEEEEE
Q 014244 77 TRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIW 155 (428)
Q Consensus 77 ~~~~~~~d~lf~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~-g~~~p~glLL~ 155 (428)
++|++|++++|+-+++.+.+.++-..++|.++..+++||+++.|.+|+.++|+|++.+|+.++++..+ |+++|+|+|||
T Consensus 93 ~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~ 172 (388)
T KOG0651|consen 93 ARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLY 172 (388)
T ss_pred ccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEe
Confidence 99999999999999988888888777999999999999999999999999999999999999999876 99999999999
Q ss_pred cCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccc
Q 014244 156 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 235 (428)
Q Consensus 156 GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~ 235 (428)
||||||||++|++||..+|++|+.+++++|+++|+||+.++||+.|+.| +...|||||+||||+++++| .++.+
T Consensus 173 GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA----~~~~pciifmdeiDAigGRr--~se~T 246 (388)
T KOG0651|consen 173 GPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA----REVIPCIIFMDEIDAIGGRR--FSEGT 246 (388)
T ss_pred CCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH----hhhCceEEeehhhhhhccEE--ecccc
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999998 47899
Q ss_pred hhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccC
Q 014244 236 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN 313 (428)
Q Consensus 236 ~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~ 313 (428)
+++|+++.|||+|+| +|+|+ +...+|++|+|||+|+.|||||+||||+|++|| +|+...|..|++.|...
T Consensus 247 s~dreiqrTLMeLln-----qmdgf---d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~ 318 (388)
T KOG0651|consen 247 SSDREIQRTLMELLN-----QMDGF---DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP 318 (388)
T ss_pred chhHHHHHHHHHHHH-----hhccc---hhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccc
Confidence 999999999999999 66666 888999999999999999999999999999999 89999999877655433
Q ss_pred ----CCCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCCCCCccCHHHHHHHHH
Q 014244 314 ----DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGN 389 (428)
Q Consensus 314 ----~~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~~l~~~~~~~~~f~~~~~~~~~ll~~g~ 389 (428)
..++.+.+.+++++|.|+|+. +.....|.|..+..+.+.++|++.
T Consensus 319 i~~~Geid~eaivK~~d~f~gad~r-------------------------------n~~tEag~Fa~~~~~~~vl~Ed~~ 367 (388)
T KOG0651|consen 319 IDFHGEIDDEAILKLVDGFNGADLR-------------------------------NVCTEAGMFAIPEERDEVLHEDFM 367 (388)
T ss_pred ccccccccHHHHHHHHhccChHHHh-------------------------------hhcccccccccchhhHHHhHHHHH
Confidence 234455555555555555421 011123578899999999999999
Q ss_pred HHHHHHhhhhhhhHHHHhcC
Q 014244 390 MIVQEQENVKRVQLADKYLS 409 (428)
Q Consensus 390 ~l~~eq~~v~~~~l~~~~l~ 409 (428)
.+|+||.++++++++..|++
T Consensus 368 k~vrk~~~~kkle~~~~Y~~ 387 (388)
T KOG0651|consen 368 KLVRKQADAKKLELSLDYKK 387 (388)
T ss_pred HHHHHHHHHHHhhhhhhhcc
Confidence 99999999999999999984
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-46 Score=371.04 Aligned_cols=178 Identities=24% Similarity=0.355 Sum_probs=168.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|++||+|||||||||||||+||+|+|+++++.|+.+.+|+|..+|+|++.+++|++|+.| +..+||||||||||+
T Consensus 180 ~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA----rekaPsIIFiDEIDA 255 (406)
T COG1222 180 LGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA----REKAPSIIFIDEIDA 255 (406)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH----hhcCCeEEEEechhh
Confidence 4999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHH
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~e 301 (428)
++.+|.. ..+..++.++.|+|+||. ||||+ .+..+|-||++|||++.||||||||||||+.|+ +|+.+
T Consensus 256 Ig~kR~d--~~t~gDrEVQRTmleLL~-----qlDGF---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~ 325 (406)
T COG1222 256 IGAKRFD--SGTSGDREVQRTMLELLN-----QLDGF---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEE 325 (406)
T ss_pred hhccccc--CCCCchHHHHHHHHHHHH-----hccCC---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHH
Confidence 9999862 345578999999999999 99999 788999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHh
Q 014244 302 DRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 302 eR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~ 335 (428)
.|.+|++.|.++ ++++++.|+++++|||||||..
T Consensus 326 gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlka 363 (406)
T COG1222 326 GRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKA 363 (406)
T ss_pred HHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHH
Confidence 999999999876 4788999999999999999974
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-44 Score=369.53 Aligned_cols=268 Identities=22% Similarity=0.289 Sum_probs=205.0
Q ss_pred ccCcCCCCCchhhHHHHHHHHHHHh-hhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChH
Q 014244 116 DNTIDGLYIAPAFMDKLVVHITKNF-MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 194 (428)
Q Consensus 116 ~~~~~~~~i~~~~~d~~~~~i~K~~-l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~ 194 (428)
+++-+-..|-.++++-+...+.+.- ++..|+..|.|||||||||||||+||+|+|+|.|++|+.+++++|+++|+||++
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESE 590 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESE 590 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHH
Confidence 4443333344444444433333322 235699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE
Q 014244 195 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT 274 (428)
Q Consensus 195 ~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~T 274 (428)
+.+|++|.+| +.+.||||||||||+++++|+. +...+..++++++|. +|||. +.+.+|.||++
T Consensus 591 rAVR~vFqRA----R~saPCVIFFDEiDaL~p~R~~-~~s~~s~RvvNqLLt---------ElDGl---~~R~gV~viaA 653 (802)
T KOG0733|consen 591 RAVRQVFQRA----RASAPCVIFFDEIDALVPRRSD-EGSSVSSRVVNQLLT---------ELDGL---EERRGVYVIAA 653 (802)
T ss_pred HHHHHHHHHh----hcCCCeEEEecchhhcCcccCC-CCchhHHHHHHHHHH---------Hhccc---ccccceEEEee
Confidence 9999999999 9999999999999999999973 335677788887773 44566 88899999999
Q ss_pred eCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhcc------CCCCCHhHHHHHhc--CCChhhHHhHHHHHhhhh
Q 014244 275 GNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR------NDNVADDDIVKLVD--TFPGQSIDFFGALRARVY 344 (428)
Q Consensus 275 TN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~------~~~l~~~~la~lt~--gfsgadL~~~~alra~~~ 344 (428)
||||+.||||+|||||||+.+| +|+.++|.+||+.+++ ..++++++|++.+. ||+||||.. |.....
T Consensus 654 TNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaa---LvreAs 730 (802)
T KOG0733|consen 654 TNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAA---LVREAS 730 (802)
T ss_pred cCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHH---HHHHHH
Confidence 9999999999999999999999 9999999999999998 24788999999987 999999973 322222
Q ss_pred HHHHHHHHHhhcC--ccchhhhhcCcCCCCCCCCCccCHHHHHHHHHHH---HHHHhhhhhhhHHHHhcCcccc
Q 014244 345 DDEVRKWISGVGV--GSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI---VQEQENVKRVQLADKYLSEAAL 413 (428)
Q Consensus 345 ~~~v~~~i~~~~~--e~~~~~l~~~~~~~~~f~~~~~~~~~ll~~g~~l---~~eq~~v~~~~l~~~~l~~~~l 413 (428)
--++++-+.++.. +.+... ..+..+|-.++-++-..+ +.|++..++.+|...|--..++
T Consensus 731 i~AL~~~~~~~~~~~~~~~~~----------~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~~~~ 794 (802)
T KOG0733|consen 731 ILALRESLFEIDSSEDDVTVR----------SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLSTAT 794 (802)
T ss_pred HHHHHHHHhhccccCccccee----------eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcccccC
Confidence 2334444433221 111110 012345556777777766 6889988888888876433333
No 5
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=363.31 Aligned_cols=254 Identities=21% Similarity=0.267 Sum_probs=206.6
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|.+.|+||||.||||||||+||+|||.|.|++|++++++++...|+|...+.+|++|..| +..+||||||||||
T Consensus 331 rLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aA----k~~APcIIFIDEiD 406 (752)
T KOG0734|consen 331 RLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAA----KARAPCIIFIDEID 406 (752)
T ss_pred hccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHH----HhcCCeEEEEechh
Confidence 35889999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
++.++|....+. ..++.++|.| ++|||+ ..+.+|+||++||.|+.||+||+||||||+++. .|+.
T Consensus 407 avG~kR~~~~~~-y~kqTlNQLL---------vEmDGF---~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv 473 (752)
T KOG0734|consen 407 AVGGKRNPSDQH-YAKQTLNQLL---------VEMDGF---KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDV 473 (752)
T ss_pred hhcccCCccHHH-HHHHHHHHHH---------HHhcCc---CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCc
Confidence 999999744432 5556666555 477888 788899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHhH---HHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCC
Q 014244 301 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFF---GALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPT 373 (428)
Q Consensus 301 eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~~---~alra~~~~~~v~~~i~~~~~e~~~~~l~~~~~~~~~ 373 (428)
..|.+|++.|+.+ +++|+..||+=|.||+|+||+.+ .|+++.+-... -+.-...|---.+++...+....
T Consensus 474 ~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~---~VtM~~LE~akDrIlMG~ERks~ 550 (752)
T KOG0734|consen 474 RGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE---MVTMKHLEFAKDRILMGPERKSM 550 (752)
T ss_pred ccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc---cccHHHHhhhhhheeeccccccc
Confidence 9999999998865 57889999999999999999965 34444321110 00111222233344444444444
Q ss_pred CC-CCccCHHHHHHHHHHHHHH-HhhhhhhhHHHHhcCccccCcc
Q 014244 374 FE-QPRMTMEKLLEYGNMIVQE-QENVKRVQLADKYLSEAALGEA 416 (428)
Q Consensus 374 f~-~~~~~~~~ll~~g~~l~~e-q~~v~~~~l~~~~l~~~~l~~~ 416 (428)
|. ....++.++||.||++|.- .+..+..-.+..+.+|.+||-.
T Consensus 551 ~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t 595 (752)
T KOG0734|consen 551 VIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHT 595 (752)
T ss_pred ccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccce
Confidence 43 3466789999999999875 5666778888999999999964
No 6
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-42 Score=361.05 Aligned_cols=175 Identities=24% Similarity=0.436 Sum_probs=160.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+.+|+|||||||||||||++|+|+|++++++|+.+++++|.++|+|++|+.||++|++| +...||||||||||
T Consensus 462 r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kA----R~~aP~IiFfDEiD 537 (693)
T KOG0730|consen 462 RFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKA----RQVAPCIIFFDEID 537 (693)
T ss_pred HhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHH----hhcCCeEEehhhHH
Confidence 35999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
++++.|+++.. .+.++++++.| + +|+|+ +...+|+||++||||+.||+||+||||||+.+| +|+.
T Consensus 538 si~~~R~g~~~-~v~~RVlsqLL-t--------EmDG~---e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 538 ALAGSRGGSSS-GVTDRVLSQLL-T--------EMDGL---EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hHhhccCCCcc-chHHHHHHHHH-H--------Hcccc---cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 99999974443 77777777655 2 44577 777999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHH
Q 014244 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID 334 (428)
Q Consensus 301 eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~ 334 (428)
+.|.+|++.++++. .++.+.|++.|+||||+||.
T Consensus 605 ~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~ 642 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIV 642 (693)
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHH
Confidence 99999999998764 56778899999999999996
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-41 Score=359.70 Aligned_cols=240 Identities=21% Similarity=0.350 Sum_probs=201.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|.++..|||||||||||||.+|+|||.|+.++|+.|++++|.++|+|++|+++|++|++| +..+||||||||+|+
T Consensus 700 sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerA----R~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 700 SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERA----RSAAPCVIFFDELDS 775 (953)
T ss_pred ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHh----hccCCeEEEeccccc
Confidence 4888899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCC-CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-C--CC
Q 014244 224 GAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A--PT 299 (428)
Q Consensus 224 ~~~~r~-~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~--P~ 299 (428)
++++|+ .+..+.|.+|.|.|.|. ++||+... ....|+||++||||+.||||||||||||+.+| - -+
T Consensus 776 lAP~RG~sGDSGGVMDRVVSQLLA---------ELDgls~~-~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 776 LAPNRGRSGDSGGVMDRVVSQLLA---------ELDGLSDS-SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred cCccCCCCCCccccHHHHHHHHHH---------HhhcccCC-CCCceEEEecCCCccccChhhcCCCccceeEEecCCcc
Confidence 999997 34567889999998885 34566332 56889999999999999999999999999999 3 35
Q ss_pred HHHHHHHHHHhccC----CCCCHhHHHHHh-cCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCC
Q 014244 300 REDRIGVCKGIFRN----DNVADDDIVKLV-DTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTF 374 (428)
Q Consensus 300 ~eeR~~Il~~~~~~----~~l~~~~la~lt-~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~~l~~~~~~~~~f 374 (428)
.+.+..|+++..++ .+++..+||+.+ ..|+|||+ .+||+.+...++++.++.+....+.. ++ ..-
T Consensus 846 ~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADl---YsLCSdA~l~AikR~i~~ie~g~~~~-----~e--~~~ 915 (953)
T KOG0736|consen 846 AESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADL---YSLCSDAMLAAIKRTIHDIESGTISE-----EE--QES 915 (953)
T ss_pred HHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHH---HHHHHHHHHHHHHHHHHHhhhccccc-----cc--cCC
Confidence 66789999888775 477788899888 57999997 48898888888888888775544433 11 111
Q ss_pred CCCccCHHHHHHHHHHH---HHHHhhhhhhhHHHHh
Q 014244 375 EQPRMTMEKLLEYGNMI---VQEQENVKRVQLADKY 407 (428)
Q Consensus 375 ~~~~~~~~~ll~~g~~l---~~eq~~v~~~~l~~~~ 407 (428)
....++.++++++...+ +.|||...+..+..+|
T Consensus 916 ~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~f 951 (953)
T KOG0736|consen 916 SSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQF 951 (953)
T ss_pred ceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhh
Confidence 34567889999999987 6788888777776665
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-40 Score=343.51 Aligned_cols=208 Identities=24% Similarity=0.348 Sum_probs=171.0
Q ss_pred HHHHHHH-HHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH
Q 014244 131 KLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 209 (428)
Q Consensus 131 ~~~~~i~-K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~ 209 (428)
+++.|+. .+.+...|+.||+|+|||||||||||+||+|||+++|++|+.++++++++++.|++++.||++|++| .
T Consensus 204 ~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A----~ 279 (802)
T KOG0733|consen 204 ELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQA----K 279 (802)
T ss_pred HHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHH----h
Confidence 3444532 2344567999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCC
Q 014244 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 289 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~g 289 (428)
...|||+||||||++.++|.. .+.....++| +.|++.+|+..+.. .....|+||+|||||+.|||||+|+|
T Consensus 280 ~~aPcivFiDeIDAI~pkRe~-aqreMErRiV-aQLlt~mD~l~~~~-------~~g~~VlVIgATnRPDslDpaLRRaG 350 (802)
T KOG0733|consen 280 SNAPCIVFIDEIDAITPKREE-AQREMERRIV-AQLLTSMDELSNEK-------TKGDPVLVIGATNRPDSLDPALRRAG 350 (802)
T ss_pred ccCCeEEEeecccccccchhh-HHHHHHHHHH-HHHHHhhhcccccc-------cCCCCeEEEecCCCCcccCHHHhccc
Confidence 999999999999999999963 3333444444 45667777333222 12467999999999999999999999
Q ss_pred CceEEEe--CCCHHHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHh
Q 014244 290 RMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISG 354 (428)
Q Consensus 290 Rfd~~i~--~P~~eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~ 354 (428)
|||+.|. .|++.+|.+||+.++++ .+++...||++|.||.||||. ||+..+..-+|++.++.
T Consensus 351 RFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~---AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 351 RFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLM---ALCREAAFVAIKRILDQ 418 (802)
T ss_pred cccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHH---HHHHHHHHHHHHHHhhc
Confidence 9999999 99999999999998874 367788999999999999998 44444444456665553
No 9
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-39 Score=345.35 Aligned_cols=257 Identities=19% Similarity=0.243 Sum_probs=189.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|++.|+|+||+||||||||+||+|+|.|.|++|+.+++++++..++|....++|++|..| +...|||+||||||
T Consensus 338 ~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~a----r~~aP~iifideid 413 (774)
T KOG0731|consen 338 ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLA----RKNAPSIIFIDEID 413 (774)
T ss_pred HcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHh----hccCCeEEEecccc
Confidence 35999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
+++..|++.. ....+..-.+||.+++ ++|||+ .....|+|+++||+++.||+||+||||||+.+. +|+.
T Consensus 414 a~~~~r~G~~-~~~~~~e~e~tlnQll-----~emDgf---~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~ 484 (774)
T KOG0731|consen 414 AVGRKRGGKG-TGGGQDEREQTLNQLL-----VEMDGF---ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDV 484 (774)
T ss_pred cccccccccc-cCCCChHHHHHHHHHH-----HHhcCC---cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCch
Confidence 9999985211 1111223334443333 377888 666889999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccCCCC-----CHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCC-CCCC
Q 014244 301 EDRIGVCKGIFRNDNV-----ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEA-APTF 374 (428)
Q Consensus 301 eeR~~Il~~~~~~~~l-----~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~~l~~~~~~-~~~f 374 (428)
.+|.+|++.|.....+ ++..|+.+|.||+|+||.++..-.+-...+.-+++|....++...++++..-+. ....
T Consensus 485 ~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~ 564 (774)
T KOG0731|consen 485 KGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKSRVL 564 (774)
T ss_pred hhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccccccchhc
Confidence 9999999999876554 344599999999999998753211111111111122222222222222222111 1222
Q ss_pred CCCccCHHHHHHHHHHHHH----HHhhhhhhhHHHHhcCccccCcc
Q 014244 375 EQPRMTMEKLLEYGNMIVQ----EQENVKRVQLADKYLSEAALGEA 416 (428)
Q Consensus 375 ~~~~~~~~~ll~~g~~l~~----eq~~v~~~~l~~~~l~~~~l~~~ 416 (428)
.......-+.||+||+++. .++.+.++.+.. |+|||.+
T Consensus 565 ~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP----GqalG~a 606 (774)
T KOG0731|consen 565 SLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP----GQALGYA 606 (774)
T ss_pred CHhhhhhhhhhhccchhhhccccccCcceeEEecc----CCccceE
Confidence 3345567899999999887 455555555544 5567654
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-38 Score=329.58 Aligned_cols=198 Identities=20% Similarity=0.321 Sum_probs=177.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
.++.+.|||||||||||||+||.++|..+++.||.+++++|.++|+|.+++.+|.+|.+| +..+||||||||+|++
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA----~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERA----QSAKPCILFFDEFDSI 772 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHh----hccCCeEEEecccccc
Confidence 678889999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHH
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 302 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ee 302 (428)
+++|+++ ...+.+|.++++|. +|||. +...+|.|+++|.||+.||||||||||+|+.++ +|+..+
T Consensus 773 APkRGhD-sTGVTDRVVNQlLT---------elDG~---Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 773 APKRGHD-STGVTDRVVNQLLT---------ELDGA---EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CcccCCC-CCCchHHHHHHHHH---------hhccc---cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 9999844 34677788887773 44455 778999999999999999999999999999999 999999
Q ss_pred HHHHHHHhcc----CCCCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchh
Q 014244 303 RIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 362 (428)
Q Consensus 303 R~~Il~~~~~----~~~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~ 362 (428)
|.+|++.+.. ..+++++.+|..|+||+||||. +|...+.-.++++|+.+.+.+....
T Consensus 840 Rl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~l~~~~~~~~~p 900 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEILKREDEEGVVP 900 (952)
T ss_pred HHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHhcCccccCC
Confidence 9999887754 4578899999999999999997 5666677778999999987665544
No 11
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-38 Score=333.48 Aligned_cols=260 Identities=20% Similarity=0.226 Sum_probs=212.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|.+.|+|+||+||||||||+||+++|.+.+++|+.+|+|++...++|-+.+.+|++|.+| ++.+||||||||||+
T Consensus 178 lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qA----kk~aP~IIFIDEiDA 253 (596)
T COG0465 178 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA----KKNAPCIIFIDEIDA 253 (596)
T ss_pred cccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHh----hccCCCeEEEehhhh
Confidence 3779999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHH
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~e 301 (428)
+...|+.+ ....+....+||.+++- +|||+ ..+..|+||++||||+-+|+||+||||||+.+. .|+..
T Consensus 254 vGr~Rg~g--~GggnderEQTLNQlLv-----EmDGF---~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~ 323 (596)
T COG0465 254 VGRQRGAG--LGGGNDEREQTLNQLLV-----EMDGF---GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIK 323 (596)
T ss_pred cccccCCC--CCCCchHHHHHHHHHHh-----hhccC---CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchh
Confidence 99998633 22334455556644444 88888 567899999999999999999999999999999 99999
Q ss_pred HHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCC-CCCC
Q 014244 302 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAP-TFEQ 376 (428)
Q Consensus 302 eR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~~l~~~~~~~~-~f~~ 376 (428)
.|.+|++.|.+.. .++...||+.|.||+|+||.....-.+....+.-+.|+...+++.-..+++...++.+ .+.+
T Consensus 324 gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise 403 (596)
T COG0465 324 GREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISE 403 (596)
T ss_pred hHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccCh
Confidence 9999999888764 5667789999999999999865422222112223345555566666666776655544 4777
Q ss_pred CccCHHHHHHHHHHHHHHHhhh-hhhhHHHHhcCccccCcch
Q 014244 377 PRMTMEKLLEYGNMIVQEQENV-KRVQLADKYLSEAALGEAN 417 (428)
Q Consensus 377 ~~~~~~~ll~~g~~l~~eq~~v-~~~~l~~~~l~~~~l~~~~ 417 (428)
......++||+||+++..--.- ..+..+....+|.|||-+.
T Consensus 404 ~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~ 445 (596)
T COG0465 404 AEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTL 445 (596)
T ss_pred hhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchh
Confidence 8888999999999998864333 4678888888999998765
No 12
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=303.57 Aligned_cols=217 Identities=24% Similarity=0.319 Sum_probs=176.7
Q ss_pred hhhHHHHHHHHHHHhhh------------CCCCCCC-cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCC
Q 014244 126 PAFMDKLVVHITKNFMS------------LPNIKVP-LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (428)
Q Consensus 126 ~~~~d~~~~~i~K~~l~------------~~g~~~p-~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge 192 (428)
-+|-|....|.+|..++ ..|++.| +|||++||||||||+||+|||.|||..|+.|+.+.|.++|-|+
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGe 288 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGE 288 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccc
Confidence 34555555666666654 1366666 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC-CCceE
Q 014244 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVPI 271 (428)
Q Consensus 193 ~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~-~~V~V 271 (428)
+++++|-+|+.| +..+|++|||||||+++.+|++.+.. ...+.+..-|+ |||||+-+.... ..|+|
T Consensus 289 SEKlvRlLFemA----RfyAPStIFiDEIDslcs~RG~s~EH-EaSRRvKsELL--------vQmDG~~~t~e~~k~VmV 355 (491)
T KOG0738|consen 289 SEKLVRLLFEMA----RFYAPSTIFIDEIDSLCSQRGGSSEH-EASRRVKSELL--------VQMDGVQGTLENSKVVMV 355 (491)
T ss_pred hHHHHHHHHHHH----HHhCCceeehhhHHHHHhcCCCccch-hHHHHHHHHHH--------HHhhccccccccceeEEE
Confidence 999999999999 99999999999999999999855443 34444544443 466687555444 56899
Q ss_pred EEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHhHHHHHhhhhH
Q 014244 272 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFFGALRARVYD 345 (428)
Q Consensus 272 I~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~~~alra~~~~ 345 (428)
+++||.|+.||+||+| ||++.|+ +|+.+.|..+++..++. ++++.++|++.++||+|+||... |..+..
T Consensus 356 LAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nv---CreAsm 430 (491)
T KOG0738|consen 356 LAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNV---CREASM 430 (491)
T ss_pred EeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHH---HHHHHH
Confidence 9999999999999999 9999999 99999999999888865 57788999999999999999753 444445
Q ss_pred HHHHHHHHhhcCccc
Q 014244 346 DEVRKWISGVGVGSI 360 (428)
Q Consensus 346 ~~v~~~i~~~~~e~~ 360 (428)
-.+|+.|....-+.+
T Consensus 431 ~~mRR~i~g~~~~ei 445 (491)
T KOG0738|consen 431 MAMRRKIAGLTPREI 445 (491)
T ss_pred HHHHHHHhcCCcHHh
Confidence 567777766544433
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-36 Score=286.11 Aligned_cols=180 Identities=24% Similarity=0.347 Sum_probs=163.4
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014244 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 142 ~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
+.-|+.||+|+|||||||||||+|++|+|+.....||.+.++++..+|.|+..+++|++|+.| +.+.|+|||||||
T Consensus 182 ~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrla----kenapsiifidei 257 (408)
T KOG0727|consen 182 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----KENAPSIIFIDEI 257 (408)
T ss_pred HHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHH----hccCCcEEEeehh
Confidence 345999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014244 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
|+++.+|. ...+..++.++..|+++++ ||+|+ ....+|-||++|||.++|||||+||||+|+.|+ +|+
T Consensus 258 daiatkrf--daqtgadrevqril~elln-----qmdgf---dq~~nvkvimatnradtldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 258 DAIATKRF--DAQTGADREVQRILIELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred hhHhhhhc--cccccccHHHHHHHHHHHH-----hccCc---CcccceEEEEecCcccccCHhhcCCccccccccCCCCc
Confidence 99999886 2345678999999999999 88888 777899999999999999999999999999999 889
Q ss_pred HHHHHHHHHHhcc----CCCCCHhHHHHHhcCCChhhHHh
Q 014244 300 REDRIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 300 ~eeR~~Il~~~~~----~~~l~~~~la~lt~gfsgadL~~ 335 (428)
+.+++-++..+.. .+.++.+++...-+..||++|..
T Consensus 328 rrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~a 367 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINA 367 (408)
T ss_pred hhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHH
Confidence 9998888766654 45677888888889999999973
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-35 Score=281.69 Aligned_cols=179 Identities=23% Similarity=0.356 Sum_probs=165.4
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014244 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 142 ~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
...|+++|+|+|+|||||||||++|+|+|.+.+..|+-+.+++|..+|+|+..+++|+.|..| +..+|+||||||+
T Consensus 198 ~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLA----KEkaP~IIFIDEl 273 (424)
T KOG0652|consen 198 ENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALA----KEKAPTIIFIDEL 273 (424)
T ss_pred HhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHh----hccCCeEEEEech
Confidence 356999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014244 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
|++..+|.++ ....++.++.+.+++++ |++|+ ....+|-||++|||.+-|||||+|.||+|+.|+ .|+
T Consensus 274 DAIGtKRfDS--ek~GDREVQRTMLELLN-----QLDGF---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pn 343 (424)
T KOG0652|consen 274 DAIGTKRFDS--EKAGDREVQRTMLELLN-----QLDGF---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 343 (424)
T ss_pred hhhccccccc--cccccHHHHHHHHHHHH-----hhcCC---CCccceEEEeecccccccCHHHhhcccccccccCCCCC
Confidence 9999888633 34567889999999999 88898 778899999999999999999999999999999 899
Q ss_pred HHHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHH
Q 014244 300 REDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSID 334 (428)
Q Consensus 300 ~eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~ 334 (428)
.+.|..|++.|.++ ++++++++++-|++|.|+...
T Consensus 344 e~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK 382 (424)
T KOG0652|consen 344 EEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK 382 (424)
T ss_pred hHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe
Confidence 99999999999876 467799999999999998765
No 15
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-35 Score=284.41 Aligned_cols=180 Identities=21% Similarity=0.335 Sum_probs=164.3
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+++|+||+|||+||||||+||+|+|+...+.|+.+-+++|..+|.|+..+++|++|+.| ...+|+|+||||||
T Consensus 213 emGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA----~e~apSIvFiDEId 288 (440)
T KOG0726|consen 213 EMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEID 288 (440)
T ss_pred HcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHH----HhcCCceEEeehhh
Confidence 34999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
++..+|.+. .+...+.++++++++|+ |++|+ ..+..|-||++||+.+.|||||+||||.|+.|+ .|+.
T Consensus 289 AiGtKRyds--~SggerEiQrtmLELLN-----QldGF---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe 358 (440)
T KOG0726|consen 289 AIGTKRYDS--NSGGEREIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358 (440)
T ss_pred hhccccccC--CCccHHHHHHHHHHHHH-----hccCc---cccCCeEEEEecccccccCHhhcCCCccccccccCCCch
Confidence 999998633 23456889999999999 88999 678899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHhH
Q 014244 301 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 301 eeR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~~ 336 (428)
..+..|+..|... .+++.+.+.---+.|||+||..+
T Consensus 359 ~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAi 398 (440)
T KOG0726|consen 359 KTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAI 398 (440)
T ss_pred hhhceeEEEeecccchhccccHHHHhhcccccccccHHHH
Confidence 9999998877654 57778888888899999999854
No 16
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=276.17 Aligned_cols=179 Identities=20% Similarity=0.303 Sum_probs=164.3
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+..|+|+|||||||||||.||+++|....+.||.+|+++|..+|+|+..+++|++|-.| +.++|+|||+||||
T Consensus 175 aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvma----rehapsiifmdeid 250 (404)
T KOG0728|consen 175 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEID 250 (404)
T ss_pred hcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHH----HhcCCceEeeeccc
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
++...|..++. ..+..++.|.+++++ |++|+ +...++-||++|||.+-|||||+||||.|+.|+ .|+.
T Consensus 251 sigs~r~e~~~--ggdsevqrtmlelln-----qldgf---eatknikvimatnridild~allrpgridrkiefp~p~e 320 (404)
T KOG0728|consen 251 SIGSSRVESGS--GGDSEVQRTMLELLN-----QLDGF---EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 320 (404)
T ss_pred ccccccccCCC--CccHHHHHHHHHHHH-----hcccc---ccccceEEEEeccccccccHhhcCCCcccccccCCCCCH
Confidence 99988863322 256778888889988 88898 888999999999999999999999999999999 8899
Q ss_pred HHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014244 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 301 eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+.|.+|++.|.++. +++...+|+...|.||+++.-
T Consensus 321 ~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~ 359 (404)
T KOG0728|consen 321 EARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKG 359 (404)
T ss_pred HHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhh
Confidence 99999999998764 678889999999999999863
No 17
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-35 Score=279.63 Aligned_cols=178 Identities=22% Similarity=0.330 Sum_probs=161.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|+.+|+|+|||||||||||++|+|+|+..+..||.+-+|+|..+|+|+..+++|++|+.| +..+-|||||||||+
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~ma----rtkkaciiffdeida 281 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA----RTKKACIIFFDEIDA 281 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHh----cccceEEEEeecccc
Confidence 5999999999999999999999999999999999999999999999999999999999999 989999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHH
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~e 301 (428)
+.+.|.+... ..+..++.+.+++++ |++|+ .+..++-|+++||||+.|||||+||||+|+.++ +|+.+
T Consensus 282 iggarfddg~--ggdnevqrtmleli~-----qldgf---dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 282 IGGARFDDGA--GGDNEVQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred ccCccccCCC--CCcHHHHHHHHHHHH-----hccCC---CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCccc
Confidence 9988753322 234567778888888 88898 888999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014244 302 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 302 eR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
.|..|++.|.+.. ++.++.|++++..-.|++|.-
T Consensus 352 grt~i~kihaksmsverdir~ellarlcpnstgaeirs 389 (435)
T KOG0729|consen 352 GRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRS 389 (435)
T ss_pred ccceeEEEeccccccccchhHHHHHhhCCCCcchHHHH
Confidence 9999999888764 555778999999999999864
No 18
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=296.67 Aligned_cols=175 Identities=24% Similarity=0.399 Sum_probs=153.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
++++|+|+|||||||||||+||+++|++++.+|+.+.++++.++|+|+++++|+.+|..| +..+||||||||+|++
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A----~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKA----RKLAPSIIFIDEIDSL 347 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHH----HcCCCcEEEEEchhhh
Confidence 789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHH
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 302 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ee 302 (428)
+..|+.... ....+.++++| ..+| +. +...+|.||+|||+|+.||+|++||||||+.++ +|+.++
T Consensus 348 ~~~r~~~~~-~~~~r~~~~lL-~~~d--------~~---e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 348 ASGRGPSED-GSGRRVVGQLL-TELD--------GI---EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred hccCCCCCc-hHHHHHHHHHH-HHhc--------CC---CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 999863322 22234555444 3333 45 667889999999999999999999999999999 999999
Q ss_pred HHHHHHHhccC------CCCCHhHHHHHhcCCChhhHHhH
Q 014244 303 RIGVCKGIFRN------DNVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 303 R~~Il~~~~~~------~~l~~~~la~lt~gfsgadL~~~ 336 (428)
|.+|++.++.. .+++.+.++++++||+|+||..+
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i 454 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAAL 454 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHH
Confidence 99999999983 35778889999999999999854
No 19
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=294.29 Aligned_cols=255 Identities=19% Similarity=0.314 Sum_probs=199.1
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC-CeEEecccccccCCCCChHHHHHHHHHHHHHHHH----hCCceEEE
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLM 217 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~-~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~----~~~p~ILf 217 (428)
..|++.-+|+|||||||||||++|+.|.+.++. ++-.|+++++.++|+|+++.++|.+|..|.+.-+ ...-.||+
T Consensus 250 ~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIII 329 (744)
T KOG0741|consen 250 QLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIII 329 (744)
T ss_pred HcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEE
Confidence 359999999999999999999999999999876 6788999999999999999999999999976555 34456999
Q ss_pred ecccccccCCCCCCcc-cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe
Q 014244 218 INDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296 (428)
Q Consensus 218 IDEiDa~~~~r~~~~~-~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~ 296 (428)
|||||++|..|+.... ..+.++.|+|+|. .|||. +...+|.||+.|||.+.||+||||||||+..++
T Consensus 330 FDEiDAICKqRGS~~g~TGVhD~VVNQLLs---------KmDGV---eqLNNILVIGMTNR~DlIDEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 330 FDEIDAICKQRGSMAGSTGVHDTVVNQLLS---------KMDGV---EQLNNILVIGMTNRKDLIDEALLRPGRLEVQME 397 (744)
T ss_pred ehhhHHHHHhcCCCCCCCCccHHHHHHHHH---------hcccH---HhhhcEEEEeccCchhhHHHHhcCCCceEEEEE
Confidence 9999999999973322 4466677776662 33344 888999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHhcc--------CCCCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhh-----cCccch
Q 014244 297 --APTREDRIGVCKGIFR--------NDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-----GVGSIG 361 (428)
Q Consensus 297 --~P~~eeR~~Il~~~~~--------~~~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~-----~~e~~~ 361 (428)
+|+++.|++|++.|.. ..+++.++||++|..|+||+|+ |.+|++.. -++.+.++.- ..+++.
T Consensus 398 IsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle--glVksA~S-~A~nR~vk~~~~~~~~~~~~e 474 (744)
T KOG0741|consen 398 ISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE--GLVKSAQS-FAMNRHVKAGGKVEVDPVAIE 474 (744)
T ss_pred EeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH--HHHHHHHH-HHHHhhhccCcceecCchhhh
Confidence 9999999999988875 3588999999999999999998 33444332 2333333321 111111
Q ss_pred hhhhcCc-------CCCCCCCCCcc---------------CHHHHHHHHHHHHHHHhhhhhhhHHHHhcCccc
Q 014244 362 KSLVNSK-------EAAPTFEQPRM---------------TMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 412 (428)
Q Consensus 362 ~~l~~~~-------~~~~~f~~~~~---------------~~~~ll~~g~~l~~eq~~v~~~~l~~~~l~~~~ 412 (428)
.--+++. +-.|.|...+. .+..+++.|.++++.-++..+..|+..++.|++
T Consensus 475 ~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~ 547 (744)
T KOG0741|consen 475 NLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPP 547 (744)
T ss_pred heeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCC
Confidence 1111111 23666754322 357788999999999999999999999999854
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.1e-33 Score=305.01 Aligned_cols=239 Identities=23% Similarity=0.353 Sum_probs=182.3
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..| +...||||||||+|
T Consensus 481 ~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A----~~~~p~iifiDEid 556 (733)
T TIGR01243 481 KMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPAIIFFDEID 556 (733)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH----HhcCCEEEEEEChh
Confidence 45889999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
++++.|+......+..+.++++| ..+| +. ....+++||+|||+|+.||+|++||||||+.++ +|+.
T Consensus 557 ~l~~~r~~~~~~~~~~~~~~~lL-~~ld--------g~---~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 557 AIAPARGARFDTSVTDRIVNQLL-TEMD--------GI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred hhhccCCCCCCccHHHHHHHHHH-HHhh--------cc---cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 99988864433344455555444 3333 44 456789999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCC-C
Q 014244 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTF-E 375 (428)
Q Consensus 301 eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~~l~~~~~~~~~f-~ 375 (428)
++|.+|++.+.+.. +++.+.+++.|+||+|+||.. ++..+...++++.+.....+.+.. ..+.+ .
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~---~~~~A~~~a~~~~~~~~~~~~~~~-------~~~~~~~ 694 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEA---VCREAAMAALRESIGSPAKEKLEV-------GEEEFLK 694 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHhhhccchhhhc-------ccccccc
Confidence 99999999887754 466788999999999999974 333444445555554332222211 00011 2
Q ss_pred CCccCHHHHHHHHHHH---HHHHhhhhhhhHHHHh
Q 014244 376 QPRMTMEKLLEYGNMI---VQEQENVKRVQLADKY 407 (428)
Q Consensus 376 ~~~~~~~~ll~~g~~l---~~eq~~v~~~~l~~~~ 407 (428)
...++.+++.++-..+ +.+++.-.+.+..+.|
T Consensus 695 ~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~ 729 (733)
T TIGR01243 695 DLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKEL 729 (733)
T ss_pred cCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 3457778877776543 3344444444554443
No 21
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=6e-33 Score=291.93 Aligned_cols=174 Identities=22% Similarity=0.353 Sum_probs=150.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|+++|+|||||||||||||++|++||++++.+++.++.+.+.++|+|++++.++++|..| +..+||||||||||+
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A----~~~~P~IL~IDEID~ 329 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIA----EALSPCILWIDEIDK 329 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHH----HhcCCcEEEehhhhh
Confidence 4889999999999999999999999999999999999999999999999999999999999 888999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHH
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~e 301 (428)
++..+.........++++.. ++..++ ....+|+||+|||+++.||++++|+||||+.++ +|+.+
T Consensus 330 ~~~~~~~~~d~~~~~rvl~~-lL~~l~-------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 330 AFSNSESKGDSGTTNRVLAT-FITWLS-------------EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hhccccCCCCchHHHHHHHH-HHHHHh-------------cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 97754422333344555554 334444 234679999999999999999999999999999 99999
Q ss_pred HHHHHHHHhccCC------CCCHhHHHHHhcCCChhhHHh
Q 014244 302 DRIGVCKGIFRND------NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 302 eR~~Il~~~~~~~------~l~~~~la~lt~gfsgadL~~ 335 (428)
+|.+|++.++... +.+.+.|++.|+||+|+||+.
T Consensus 396 eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~ 435 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQ 435 (489)
T ss_pred HHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHH
Confidence 9999999998653 456788999999999999974
No 22
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-32 Score=274.74 Aligned_cols=259 Identities=20% Similarity=0.295 Sum_probs=188.3
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHH--HhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCC
Q 014244 113 YNLDNTIDGLYIAPAFMDKLVVHITK--NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K--~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~ 190 (428)
.+|+.+-|-..+.....+.+++..-. .|....-.++|+|||||||||||||++|+|+|++.|.+|+.++.+.+.++|.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 34455555444444444444433322 1212234578999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 014244 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (428)
Q Consensus 191 Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~ 270 (428)
|+.+++++.+|..| .+-+||||||||+|++.+.|. .+ .....++...-+|-+.| |.. .....+|+
T Consensus 169 gE~eKlv~AvFslA----sKl~P~iIFIDEvds~L~~R~-s~-dHEa~a~mK~eFM~~WD--------Gl~-s~~~~rVl 233 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLA----SKLQPSIIFIDEVDSFLGQRR-ST-DHEATAMMKNEFMALWD--------GLS-SKDSERVL 233 (386)
T ss_pred HHHHHHHHHHHhhh----hhcCcceeehhhHHHHHhhcc-cc-hHHHHHHHHHHHHHHhc--------ccc-CCCCceEE
Confidence 99999999999999 899999999999999999883 33 44455566666666666 552 23345799
Q ss_pred EEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhHHHHHhhhh
Q 014244 271 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVY 344 (428)
Q Consensus 271 VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~~alra~~~ 344 (428)
|+++||||.+||.|++| ||.+.++ +|+.++|.+|++.+++.. +++...+|.+|+||+|+||..++... .
T Consensus 234 VlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~A---a 308 (386)
T KOG0737|consen 234 VLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLA---A 308 (386)
T ss_pred EEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHH---h
Confidence 99999999999999999 8998888 999999999999999875 56788899999999999998543322 2
Q ss_pred HHHHHHHHHhh-cCccchhhhhcCcCCCC---CCCCCccCHHHHHHHHHHH
Q 014244 345 DDEVRKWISGV-GVGSIGKSLVNSKEAAP---TFEQPRMTMEKLLEYGNMI 391 (428)
Q Consensus 345 ~~~v~~~i~~~-~~e~~~~~l~~~~~~~~---~f~~~~~~~~~ll~~g~~l 391 (428)
-.-+|+++..- +..+....+...+...+ ...-..+..++|+.+-+.+
T Consensus 309 ~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 309 LRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRV 359 (386)
T ss_pred HhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhh
Confidence 33466666552 21112111111111111 1123456778888887744
No 23
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.8e-33 Score=316.52 Aligned_cols=173 Identities=9% Similarity=0.056 Sum_probs=138.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCC----------CC----------------------
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN----------AG---------------------- 191 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~----------~G---------------------- 191 (428)
.|+++|+||||+||||||||+||+|+|.+++++|+.++++++.+++ +|
T Consensus 1625 LGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred cCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 4889999999999999999999999999999999999999998654 12
Q ss_pred ---------ChHH--HHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCc
Q 014244 192 ---------EPAK--LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM 260 (428)
Q Consensus 192 ---------e~~~--~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~ 260 (428)
+.+. .|+.+|+.| ++.+||||||||||+++.+.. . ......|++.+| |.
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelA----Rk~SPCIIFIDEIDaL~~~ds---~-----~ltL~qLLneLD--------g~ 1764 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELA----KAMSPCIIWIPNIHDLNVNES---N-----YLSLGLLVNSLS--------RD 1764 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHH----HHCCCeEEEEEchhhcCCCcc---c-----eehHHHHHHHhc--------cc
Confidence 2223 388899999 999999999999999987621 1 111223444444 44
Q ss_pred cccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHh-------ccCCCCCHhHHHHHhcCCChh
Q 014244 261 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGI-------FRNDNVADDDIVKLVDTFPGQ 331 (428)
Q Consensus 261 ~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~-------~~~~~l~~~~la~lt~gfsga 331 (428)
.......+|+||||||+|+.|||||+||||||+.++ .|+..+|.+++..+ +....++.+.+|+.|.||+||
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 222345789999999999999999999999999999 78998998887643 222346788899999999999
Q ss_pred hHHhH
Q 014244 332 SIDFF 336 (428)
Q Consensus 332 dL~~~ 336 (428)
||..+
T Consensus 1845 DLanL 1849 (2281)
T CHL00206 1845 DLVAL 1849 (2281)
T ss_pred HHHHH
Confidence 99854
No 24
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1e-32 Score=291.89 Aligned_cols=207 Identities=21% Similarity=0.290 Sum_probs=161.8
Q ss_pred ccccccCcCCCCCchhhHHHHHHHHHHH--hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCC
Q 014244 112 TYNLDNTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (428)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~K~--~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~ 189 (428)
..+|+++.|...+..+..+ .+.. .++ .+...|.++|+|+|||||||||||++|+++|++++++|+.++++++.+.+
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 4556676665444444332 2211 221 12335788999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 014244 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (428)
Q Consensus 190 ~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~ 267 (428)
.|.+++.++.+|..| +...||||||||||++..++.... ......+.++++| . ++++. ....
T Consensus 129 ~g~~~~~l~~~f~~a----~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL-~--------~~d~~---~~~~ 192 (495)
T TIGR01241 129 VGVGASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLL-V--------EMDGF---GTNT 192 (495)
T ss_pred hcccHHHHHHHHHHH----HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHH-h--------hhccc---cCCC
Confidence 999999999999999 888999999999999988775321 1112223444333 2 33344 4456
Q ss_pred CceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhH
Q 014244 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 268 ~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~ 336 (428)
+|+||+|||+++.||++|+||||||+.++ .|+.++|.+|++.++... +++.+.+++.+.||+|+||..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHH
Confidence 79999999999999999999999999999 999999999999998764 3567789999999999999854
No 25
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=5.2e-33 Score=300.49 Aligned_cols=259 Identities=22% Similarity=0.258 Sum_probs=181.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|.++|+|+|||||||||||++|+++|++++.+|+.++++++.+.+.|.....++.+|..| +...||||||||||+
T Consensus 211 ~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A----~~~~P~ILfIDEID~ 286 (638)
T CHL00176 211 VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKA----KENSPCIVFIDEIDA 286 (638)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHH----hcCCCcEEEEecchh
Confidence 4788999999999999999999999999999999999999999999999888999999999 889999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHH
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~e 301 (428)
++..|+..... .+....++|..++. .+++. ....+|.||+|||+++.||++|+||||||+.+. +|+.+
T Consensus 287 l~~~r~~~~~~--~~~e~~~~L~~LL~-----~~dg~---~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~ 356 (638)
T CHL00176 287 VGRQRGAGIGG--GNDEREQTLNQLLT-----EMDGF---KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356 (638)
T ss_pred hhhcccCCCCC--CcHHHHHHHHHHHh-----hhccc---cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHH
Confidence 98777522111 11222334444443 33354 445789999999999999999999999999998 99999
Q ss_pred HHHHHHHHhccCCC----CCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCCCCC
Q 014244 302 DRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQP 377 (428)
Q Consensus 302 eR~~Il~~~~~~~~----l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~~l~~~~~~~~~f~~~ 377 (428)
+|.+|++.+++... ++...+++.+.||+|+||..+..-.+....+.-++.+....++....+++...++.+.....
T Consensus 357 ~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~ 436 (638)
T CHL00176 357 GRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDSK 436 (638)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccccHH
Confidence 99999999987643 44566999999999999985421000000000001111111111111222111111222233
Q ss_pred ccCHHHHHHHHHHHHHHHh-hhhhhhHHHHhcCccccCcc
Q 014244 378 RMTMEKLLEYGNMIVQEQE-NVKRVQLADKYLSEAALGEA 416 (428)
Q Consensus 378 ~~~~~~ll~~g~~l~~eq~-~v~~~~l~~~~l~~~~l~~~ 416 (428)
.....++||+||+++...- ....+..+....+|.+||..
T Consensus 437 ~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~ 476 (638)
T CHL00176 437 NKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLT 476 (638)
T ss_pred HHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCce
Confidence 4567899999999987532 22333344445677788754
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.7e-33 Score=269.51 Aligned_cols=173 Identities=21% Similarity=0.286 Sum_probs=150.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
+-+|-+|+||||||||||++||+|+|.+.+-.|+.+|.++|+++|.|+++++++++|+.| +.++|+||||||||++
T Consensus 162 kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemA----Re~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 162 KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMA----RENKPSIIFIDEIDSL 237 (439)
T ss_pred CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHH----HhcCCcEEEeehhhhh
Confidence 334459999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHH
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 302 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ee 302 (428)
+++|+++. .....++-..+| |||.|.- ....+|+|+++||-|+.||.|++| ||++.|| +|....
T Consensus 238 cg~r~enE-seasRRIKTEfL---------VQMqGVG--~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~A 303 (439)
T KOG0739|consen 238 CGSRSENE-SEASRRIKTEFL---------VQMQGVG--NDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 303 (439)
T ss_pred ccCCCCCc-hHHHHHHHHHHH---------Hhhhccc--cCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHH
Confidence 99997443 334445555555 5666762 345789999999999999999999 9999999 999999
Q ss_pred HHHHHHHhccCCC-----CCHhHHHHHhcCCChhhHHh
Q 014244 303 RIGVCKGIFRNDN-----VADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 303 R~~Il~~~~~~~~-----l~~~~la~lt~gfsgadL~~ 335 (428)
|..+++.|+..-+ -++.+|++.|+||||+||..
T Consensus 304 R~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisi 341 (439)
T KOG0739|consen 304 RARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISI 341 (439)
T ss_pred hhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEE
Confidence 9999999997642 34667999999999999964
No 27
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.98 E-value=3.5e-32 Score=280.13 Aligned_cols=181 Identities=20% Similarity=0.307 Sum_probs=153.3
Q ss_pred hhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 014244 141 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (428)
Q Consensus 141 l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (428)
....|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++.++|.|++++.++.+|..| +..+||||||||
T Consensus 171 ~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A----~~~~P~ILfIDE 246 (398)
T PTZ00454 171 YEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLA----RENAPSIIFIDE 246 (398)
T ss_pred HHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHH----HhcCCeEEEEEC
Confidence 3456899999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CC
Q 014244 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 298 (428)
Q Consensus 221 iDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 298 (428)
+|+++.+|.+... ..++.+...+++++. ++++. ....++.||+|||+++.|||+++|+||||+.++ .|
T Consensus 247 ID~i~~~r~~~~~--~~d~~~~r~l~~LL~-----~ld~~---~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 247 VDSIATKRFDAQT--GADREVQRILLELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred HhhhccccccccC--CccHHHHHHHHHHHH-----Hhhcc---CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 9999887642211 112334445555554 33344 445678999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014244 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
+.++|.+|++.++... +++.+.+++.++||+|+||..
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~ 357 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAA 357 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 9999999999888754 567788999999999999974
No 28
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1.3e-31 Score=275.70 Aligned_cols=181 Identities=23% Similarity=0.353 Sum_probs=154.5
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014244 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 142 ~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
...|+.+|+|+|||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..| +...||||||||+
T Consensus 158 ~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~IlfiDEi 233 (389)
T PRK03992 158 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELA----REKAPSIIFIDEI 233 (389)
T ss_pred HhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHH----HhcCCeEEEEech
Confidence 356889999999999999999999999999999999999999999999999999999999999 8889999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014244 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
|+++..+.+... .....+.+++++++. ++++. ....++.||+|||+++.||++++||||||+.++ +|+
T Consensus 234 D~l~~~r~~~~~--~~~~~~~~~l~~lL~-----~ld~~---~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~ 303 (389)
T PRK03992 234 DAIAAKRTDSGT--SGDREVQRTLMQLLA-----EMDGF---DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD 303 (389)
T ss_pred hhhhcccccCCC--CccHHHHHHHHHHHH-----hcccc---CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence 999887753221 122334555555555 33344 445689999999999999999999999999998 999
Q ss_pred HHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhH
Q 014244 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 300 ~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~ 336 (428)
.++|.+|++.++... +++.+.+++.|+||+|+||..+
T Consensus 304 ~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 304 EEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAI 344 (389)
T ss_pred HHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence 999999999998753 4678889999999999999843
No 29
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=255.75 Aligned_cols=183 Identities=22% Similarity=0.289 Sum_probs=152.6
Q ss_pred HHHHHHhhhCC---CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHh
Q 014244 134 VHITKNFMSLP---NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 210 (428)
Q Consensus 134 ~~i~K~~l~~~---g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~ 210 (428)
..+.-.|+..| |-=.|+.||+|||||||||++|+|+|+++..+++.+++.+|..+++|+..+.|+++|.+| ++
T Consensus 133 crli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA----~~ 208 (368)
T COG1223 133 CRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERA----RK 208 (368)
T ss_pred HHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHH----Hh
Confidence 33444566543 444699999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCC
Q 014244 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 290 (428)
Q Consensus 211 ~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gR 290 (428)
.+|||+||||+|+++-+|.-.+-..-....++++|. +|+|. ..+.+|..|++||+|+.||+|++. |
T Consensus 209 ~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLT---------elDgi---~eneGVvtIaaTN~p~~LD~aiRs--R 274 (368)
T COG1223 209 AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLT---------ELDGI---KENEGVVTIAATNRPELLDPAIRS--R 274 (368)
T ss_pred cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHH---------hccCc---ccCCceEEEeecCChhhcCHHHHh--h
Confidence 999999999999998766422222223355555442 33355 788999999999999999999875 9
Q ss_pred ceEEEe--CCCHHHHHHHHHHhccCCCC----CHhHHHHHhcCCChhhHH
Q 014244 291 MEKFYW--APTREDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSID 334 (428)
Q Consensus 291 fd~~i~--~P~~eeR~~Il~~~~~~~~l----~~~~la~lt~gfsgadL~ 334 (428)
|+..|+ +|+.++|.+|++.+.+..++ ++..+++.+.||||.||.
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH
Confidence 999988 99999999999999887543 466799999999999985
No 30
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=8.5e-31 Score=275.97 Aligned_cols=252 Identities=18% Similarity=0.227 Sum_probs=180.8
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC----------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhC
Q 014244 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 211 (428)
Q Consensus 142 ~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~----------~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~ 211 (428)
...|+++|+|+|||||||||||++|+++|++++.+ |+.++++++.++|.|++++.++.+|..|......+
T Consensus 209 ~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g 288 (512)
T TIGR03689 209 REYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDG 288 (512)
T ss_pred HhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcC
Confidence 34689999999999999999999999999998654 66788899999999999999999999996665667
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCc
Q 014244 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 291 (428)
.||||||||+|+++.+|+.+.......+++.+ |++.+| +. ....+|+||+|||+++.|||||+|||||
T Consensus 289 ~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~-LL~~LD--------gl---~~~~~ViVI~ATN~~d~LDpALlRpGRf 356 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQ-LLSELD--------GV---ESLDNVIVIGASNREDMIDPAILRPGRL 356 (512)
T ss_pred CCceEEEehhhhhhcccCCCccchHHHHHHHH-HHHHhc--------cc---ccCCceEEEeccCChhhCCHhhcCcccc
Confidence 89999999999999887633222333444443 444444 54 4457899999999999999999999999
Q ss_pred eEEEe--CCCHHHHHHHHHHhccCCCCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHH-----HHHHH-----------
Q 014244 292 EKFYW--APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEV-----RKWIS----------- 353 (428)
Q Consensus 292 d~~i~--~P~~eeR~~Il~~~~~~~~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v-----~~~i~----------- 353 (428)
|+.|+ .|+.++|.+|++.++... ++.+.....+.|++++++..+ ..++++... +.|+.
T Consensus 357 D~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~~~~g~~~a~~~al---~~~av~~~~a~~~~~~~l~~~~~~g~~~~l 432 (512)
T TIGR03689 357 DVKIRIERPDAEAAADIFSKYLTDS-LPLDADLAEFDGDREATAAAL---IQRAVDHLYATSEENRYVEVTYANGSTEVL 432 (512)
T ss_pred ceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHHHhcCCCHHHHHHH---HHHHHHHHhhhhcccceeEEEecCCceeeE
Confidence 99988 999999999999998653 222333344789999988743 222222111 11111
Q ss_pred ---hhcCccchhhhhcCcCC-----CCCCCCCccCHHHHHHHHHHHHHHHhhhhhhhHHHHhcC
Q 014244 354 ---GVGVGSIGKSLVNSKEA-----APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS 409 (428)
Q Consensus 354 ---~~~~e~~~~~l~~~~~~-----~~~f~~~~~~~~~ll~~g~~l~~eq~~v~~~~l~~~~l~ 409 (428)
..-.+.+.+.+|.+.+. ...-....+++++|+.+...-..|++......-.+.+.+
T Consensus 433 ~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~~~w~~ 496 (512)
T TIGR03689 433 YFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNPDDWAR 496 (512)
T ss_pred eecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCHHHHhh
Confidence 00112222333322110 001123578899999999999999988887776666643
No 31
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=6e-31 Score=286.02 Aligned_cols=254 Identities=20% Similarity=0.225 Sum_probs=180.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.+.+.|+|+||+||||||||++|+++|++++.+|+.++++++.+.+.|.....++.+|..| +...||||||||+|+
T Consensus 180 ~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a----~~~~P~IifIDEiD~ 255 (644)
T PRK10733 180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEIDA 255 (644)
T ss_pred cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH----HhcCCcEEEehhHhh
Confidence 4667899999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred ccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014244 224 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 224 ~~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
++.+|+... ......+.++++| . .++++ ....+|+||+|||+|+.||+|++||||||+.++ +|+
T Consensus 256 l~~~r~~~~~g~~~~~~~~ln~lL----~-----~mdg~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 256 VGRQRGAGLGGGHDEREQTLNQML----V-----EMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred hhhccCCCCCCCchHHHHHHHHHH----H-----hhhcc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 988875321 1122234444433 2 33455 456789999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHH---HHHhhcCccchhhhhcCcC-CC
Q 014244 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---WISGVGVGSIGKSLVNSKE-AA 371 (428)
Q Consensus 300 ~eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~---~i~~~~~e~~~~~l~~~~~-~~ 371 (428)
.++|.+|++.|+... +++...+++.+.||+|+||..+..-.+ ..++++ .+....++....++....+ ..
T Consensus 324 ~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa---~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~ 400 (644)
T PRK10733 324 VRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA---LFAARGNKRVVSMVEFEKAKDKIMMGAERRS 400 (644)
T ss_pred HHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHH---HHHHHcCCCcccHHHHHHHHHHHhccccccc
Confidence 999999999998764 466777999999999999985421111 111111 1111111111111111100 11
Q ss_pred CCCCCCccCHHHHHHHHHHHHHHHhh-hhhhhHHHHhcCccccCcc
Q 014244 372 PTFEQPRMTMEKLLEYGNMIVQEQEN-VKRVQLADKYLSEAALGEA 416 (428)
Q Consensus 372 ~~f~~~~~~~~~ll~~g~~l~~eq~~-v~~~~l~~~~l~~~~l~~~ 416 (428)
...........++||+||+++...-. ...+..+....+|.+||..
T Consensus 401 ~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~ 446 (644)
T PRK10733 401 MVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVT 446 (644)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCccee
Confidence 11222334567999999999875322 2223333445567788854
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=267.98 Aligned_cols=179 Identities=21% Similarity=0.323 Sum_probs=151.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+.+|+|+|||||||||||++|++||++++.+|+.+.++++.++|.|+.++.++.+|..| ....||||||||||
T Consensus 211 ~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A----~~~~P~ILfIDEID 286 (438)
T PTZ00361 211 DIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EENAPSIVFIDEID 286 (438)
T ss_pred hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHH----HhCCCcEEeHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
+++.+|..... ...+.+..++++++. +++++ ....++.||+|||+++.||++++|+||||+.|+ .|+.
T Consensus 287 ~l~~kR~~~~s--gg~~e~qr~ll~LL~-----~Ldg~---~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 287 AIGTKRYDATS--GGEKEIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred HHhccCCCCCC--cccHHHHHHHHHHHH-----HHhhh---cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 99887742211 112233344444444 33354 345678999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014244 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 301 eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
++|.+|++.++... +++.+.++..++||+|+||..
T Consensus 357 ~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~ 395 (438)
T PTZ00361 357 KTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKA 395 (438)
T ss_pred HHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHH
Confidence 99999999887553 567888999999999999874
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=266.84 Aligned_cols=239 Identities=22% Similarity=0.316 Sum_probs=184.8
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCC-ceEEEeccc
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDL 221 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~-p~ILfIDEi 221 (428)
..|+++|+|+|+|||||||||+++++||++.+++++.++++++.+++.|++++.+|..|++| .+.+ |+|||||||
T Consensus 212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a----~k~~~psii~IdEl 287 (693)
T KOG0730|consen 212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEA----LKFQVPSIIFIDEL 287 (693)
T ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHH----hccCCCeeEeHHhH
Confidence 35999999999999999999999999999999999999999999999999999999999999 8888 999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014244 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
|+++++|... .. ..+.+...|+.++| ++ ....+++||+|||+|+.||+++.| ||||+.+. .|+
T Consensus 288 d~l~p~r~~~-~~--~e~Rv~sqlltL~d--------g~---~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 288 DALCPKREGA-DD--VESRVVSQLLTLLD--------GL---KPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPG 352 (693)
T ss_pred hhhCCccccc-ch--HHHHHHHHHHHHHh--------hC---cCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCC
Confidence 9999998632 22 34555667778888 66 466899999999999999999999 99999999 999
Q ss_pred HHHHHHHHHHhccCCC----CCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcC---cCCCC
Q 014244 300 REDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNS---KEAAP 372 (428)
Q Consensus 300 ~eeR~~Il~~~~~~~~----l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~~l~~~---~~~~~ 372 (428)
..+|.+|++.+++..+ ++...++..++||.|+||. +++......++++. .+.+...+.+. ....+
T Consensus 353 ~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~---~l~~ea~~~~~r~~-----~~~~~~A~~~i~psa~Re~ 424 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA---ALCREASLQATRRT-----LEIFQEALMGIRPSALREI 424 (693)
T ss_pred chhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH---HHHHHHHHHHhhhh-----HHHHHHHHhcCCchhhhhe
Confidence 9999999999987654 4566799999999999996 34433334444441 11111111111 11234
Q ss_pred CCCCCccCHHHHHHHHHHHHHH-Hhhhh-hhhHHHHhcC
Q 014244 373 TFEQPRMTMEKLLEYGNMIVQE-QENVK-RVQLADKYLS 409 (428)
Q Consensus 373 ~f~~~~~~~~~ll~~g~~l~~e-q~~v~-~~~l~~~~l~ 409 (428)
..+.|+++|+++-..-. ++.| |+.|. ..+..++|.+
T Consensus 425 ~ve~p~v~W~dIGGlE~-lK~elq~~V~~p~~~pe~F~r 462 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEE-LKRELQQAVEWPLKHPEKFAR 462 (693)
T ss_pred eccCCCCChhhccCHHH-HHHHHHHHHhhhhhchHHHHH
Confidence 45778888888743333 2233 44443 3666677655
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=2.4e-29 Score=256.40 Aligned_cols=179 Identities=25% Similarity=0.348 Sum_probs=150.7
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++..+|.|+..+.++..|..+ +...|+||||||+|
T Consensus 150 ~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~il~iDEiD 225 (364)
T TIGR01242 150 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELA----KEKAPSIIFIDEID 225 (364)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHH----HhcCCcEEEhhhhh
Confidence 45889999999999999999999999999999999999999999999999999999999988 88899999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
.+...+.+.. ......++.++++++. .+++. ....++.||+|||+++.+|++++||||||+.++ .|+.
T Consensus 226 ~l~~~~~~~~--~~~~~~~~~~l~~ll~-----~ld~~---~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 226 AIAAKRTDSG--TSGDREVQRTLMQLLA-----ELDGF---DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred hhccccccCC--CCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH
Confidence 9987764221 1122333444555554 23343 345689999999999999999999999999988 9999
Q ss_pred HHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHh
Q 014244 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 301 eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~ 335 (428)
++|.+|++.++... +++.+.+++.++||+|+||..
T Consensus 296 ~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~ 334 (364)
T TIGR01242 296 EGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKA 334 (364)
T ss_pred HHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence 99999999887653 467888999999999999974
No 35
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-29 Score=256.78 Aligned_cols=172 Identities=20% Similarity=0.285 Sum_probs=149.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
.+++|+||.||||+|||+|++|||.|++..|+.+++++|.++|+|++++++|.+|.-| +..+|+|+||||+|+++.
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vA----r~~qPsvifidEidslls 259 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVA----RSLQPSVIFIDEIDSLLS 259 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHH----HhcCCeEEEechhHHHHh
Confidence 3569999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHH
Q 014244 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 304 (428)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~ 304 (428)
.|. ........++..++|+++.- . ......+|+||+|||+|+.+|.|++| ||.++++ +|+.+.|.
T Consensus 260 ~Rs-~~e~e~srr~ktefLiq~~~---------~-~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~ 326 (428)
T KOG0740|consen 260 KRS-DNEHESSRRLKTEFLLQFDG---------K-NSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRS 326 (428)
T ss_pred hcC-CcccccchhhhhHHHhhhcc---------c-cCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHH
Confidence 885 33445555777777754432 2 12345699999999999999999999 9999999 99999999
Q ss_pred HHHHHhccCCC-----CCHhHHHHHhcCCChhhHHh
Q 014244 305 GVCKGIFRNDN-----VADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 305 ~Il~~~~~~~~-----l~~~~la~lt~gfsgadL~~ 335 (428)
.|+..++...+ .+.+.|+++|+||+|.||.-
T Consensus 327 ~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~ 362 (428)
T KOG0740|consen 327 LLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITA 362 (428)
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHH
Confidence 99999887652 34666999999999999973
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-27 Score=260.73 Aligned_cols=179 Identities=20% Similarity=0.258 Sum_probs=155.3
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEE
Q 014244 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 216 (428)
Q Consensus 142 ~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~IL 216 (428)
...++.+|+|+|+|||||||||+.|+++|..+ .+.|+.-++.+..++|+|+.++.+|.+|++| ++.+|+||
T Consensus 292 ~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA----~k~qPSII 367 (1080)
T KOG0732|consen 292 DNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEA----QKTQPSII 367 (1080)
T ss_pred hhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHH----hccCceEE
Confidence 34689999999999999999999999999996 3568889999999999999999999999999 99999999
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe
Q 014244 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296 (428)
Q Consensus 217 fIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~ 296 (428)
|+||||-+++.|+ ..+... ..-+..||+-++| |+ ...+.|+||+||||++.+||||+||||||+.+|
T Consensus 368 ffdeIdGlapvrS-skqEqi-h~SIvSTLLaLmd--------Gl---dsRgqVvvigATnRpda~dpaLRRPgrfdref~ 434 (1080)
T KOG0732|consen 368 FFDEIDGLAPVRS-SKQEQI-HASIVSTLLALMD--------GL---DSRGQVVVIGATNRPDAIDPALRRPGRFDREFY 434 (1080)
T ss_pred ecccccccccccc-chHHHh-hhhHHHHHHHhcc--------CC---CCCCceEEEcccCCccccchhhcCCcccceeEe
Confidence 9999999999885 222222 3344557777777 77 778999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHhccCC--CCC---HhHHHHHhcCCChhhHHhHH
Q 014244 297 --APTREDRIGVCKGIFRND--NVA---DDDIVKLVDTFPGQSIDFFG 337 (428)
Q Consensus 297 --~P~~eeR~~Il~~~~~~~--~l~---~~~la~lt~gfsgadL~~~~ 337 (428)
+|+.+.|.+|+..+..+. .+. ...+++.+.||.|+||.+++
T Consensus 435 f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 435 FPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred eeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 999999999999998764 333 34599999999999998654
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=6.3e-26 Score=250.42 Aligned_cols=177 Identities=25% Similarity=0.345 Sum_probs=151.3
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..|+.+|+|+|||||||||||++|+++|++++.+++.++++++.+++.|+.+..++.+|+.| ....|+||||||+|
T Consensus 206 ~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a----~~~~p~il~iDEid 281 (733)
T TIGR01243 206 HLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEA----EENAPSIIFIDEID 281 (733)
T ss_pred hcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHH----HhcCCcEEEeehhh
Confidence 46889999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
+++..+.. .......+ +...|+++++ +. ....+++||+|||+++.||++++|+||||+.++ .|+.
T Consensus 282 ~l~~~r~~-~~~~~~~~-~~~~Ll~~ld--------~l---~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 282 AIAPKREE-VTGEVEKR-VVAQLLTLMD--------GL---KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK 348 (733)
T ss_pred hhcccccC-CcchHHHH-HHHHHHHHhh--------cc---ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCH
Confidence 99988752 22222233 3445656666 33 334678999999999999999999999999988 9999
Q ss_pred HHHHHHHHHhccCC----CCCHhHHHHHhcCCChhhHHhH
Q 014244 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 301 eeR~~Il~~~~~~~----~l~~~~la~lt~gfsgadL~~~ 336 (428)
++|.+|++.+.... +++.+.+++.++||+|+|+..+
T Consensus 349 ~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l 388 (733)
T TIGR01243 349 RARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAAL 388 (733)
T ss_pred HHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHH
Confidence 99999999887654 4567789999999999999753
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.90 E-value=2.3e-23 Score=179.34 Aligned_cols=130 Identities=27% Similarity=0.404 Sum_probs=111.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCC-ceEEEecccccccCCCCC
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDLDAGAGRMGG 230 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~-p~ILfIDEiDa~~~~r~~ 230 (428)
|||+||||||||++|+++|+.++.+++.++++++.+.+.++..+.++..|..+ +... ||||||||+|.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~vl~iDe~d~l~~~~~- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKA----KKSAKPCVLFIDEIDKLFPKSQ- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHH----HHTSTSEEEEEETGGGTSHHCS-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccc----cccccceeeeeccchhcccccc-
Confidence 79999999999999999999999999999999999999999999999999998 7666 99999999999988762
Q ss_pred CcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEeCC
Q 014244 231 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 298 (428)
Q Consensus 231 ~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~P 298 (428)
.......+.+.+.|++.+++.. ....+++||+|||+++.++++++| +||++.++.|
T Consensus 76 -~~~~~~~~~~~~~L~~~l~~~~----------~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 76 -PSSSSFEQRLLNQLLSLLDNPS----------SKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp -TSSSHHHHHHHHHHHHHHHTTT----------TTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred -cccccccccccceeeecccccc----------cccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 2344455666667778877221 124679999999999999999999 9999999854
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.7e-22 Score=201.30 Aligned_cols=192 Identities=18% Similarity=0.201 Sum_probs=137.6
Q ss_pred CCCCchhhHHHHHHHH-HHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHH
Q 014244 121 GLYIAPAFMDKLVVHI-TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 199 (428)
Q Consensus 121 ~~~i~~~~~d~~~~~i-~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~ 199 (428)
+..++.+.++.+.-.+ -|.|.+.-|..+.+|.|||||||||||++..|+|++++..++.+..++... ... +|.
T Consensus 206 d~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-----n~d-Lr~ 279 (457)
T KOG0743|consen 206 DPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-----DSD-LRH 279 (457)
T ss_pred ChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----cHH-HHH
Confidence 3334444444433332 456677789999999999999999999999999999999999988776542 222 444
Q ss_pred HHHHHHHHHHhCCceEEEecccccccCCCCCCccc----c-hhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE
Q 014244 200 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY----T-VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT 274 (428)
Q Consensus 200 ~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~----~-~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~T 274 (428)
+... ....+||+|.|||+-...++..... . ..+.+..+=|+|.+| |.|......+ +||.|
T Consensus 280 LL~~------t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD--------GlwSscg~ER-IivFT 344 (457)
T KOG0743|consen 280 LLLA------TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLD--------GLWSSCGDER-IIVFT 344 (457)
T ss_pred HHHh------CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhc--------cccccCCCce-EEEEe
Confidence 4443 4567899999999886543311111 0 112233344566666 8888776555 69999
Q ss_pred eCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCC--ChhhH
Q 014244 275 GNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTF--PGQSI 333 (428)
Q Consensus 275 TN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gf--sgadL 333 (428)
||+++.|||||+||||||.+|+ .=+.++-..+.+.++..+ ..=++++.++.++- ++|++
T Consensus 345 TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V 409 (457)
T KOG0743|consen 345 TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQV 409 (457)
T ss_pred cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHH
Confidence 9999999999999999999999 668888888999999774 33366788877776 55554
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.7e-20 Score=184.46 Aligned_cols=183 Identities=18% Similarity=0.296 Sum_probs=137.5
Q ss_pred ccCcCCCCCchhhHHHHHHHH--HHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC---------CeEEecccc
Q 014244 116 DNTIDGLYIAPAFMDKLVVHI--TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGE 184 (428)
Q Consensus 116 ~~~~~~~~i~~~~~d~~~~~i--~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~---------~~i~vs~s~ 184 (428)
++.+-+..++.+.+.-..... +..-....-+...+-||||||||||||+||+++|+++.+ ..+.+++..
T Consensus 142 EsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs 221 (423)
T KOG0744|consen 142 ESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS 221 (423)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH
Confidence 555545455555544332211 111111224567789999999999999999999999754 467799999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEecccccccCCCC---CCcccchhhHHHHHHHHHhhcCCccccCCCc
Q 014244 185 LESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMG---GTTQYTVNNQMVNATLMNIADNPTCVQLPGM 260 (428)
Q Consensus 185 L~s~~~Ge~~~~Ir~~F~~A~~~i~-~~~p~ILfIDEiDa~~~~r~---~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~ 260 (428)
|.++|.+|+.+++..+|++..+++. .+...+++|||+++++..|. ..++.+-.-|.|++.|. | +
T Consensus 222 LFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLT---------Q---l 289 (423)
T KOG0744|consen 222 LFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLT---------Q---L 289 (423)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHH---------H---H
Confidence 9999999999999999999988888 66777899999999976663 22333344466665553 2 2
Q ss_pred cccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhcc
Q 014244 261 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 312 (428)
Q Consensus 261 ~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~ 312 (428)
++....++|++++|+|-.+.||-|+.- |-|...+ .|+.+.|.+|++..+.
T Consensus 290 DrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 290 DRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 233777999999999999999999985 8898888 9999999999987763
No 41
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.1e-20 Score=197.03 Aligned_cols=149 Identities=21% Similarity=0.300 Sum_probs=126.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccC---------CCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG---------NAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~---------~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (428)
.++||+||||+|||+|+++||+.+|..|+.++.+.+.+. |+|.-...|-+-..+| ....| +++|||
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka----~~~NP-v~LLDE 425 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA----GVKNP-VFLLDE 425 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh----CCcCC-eEEeec
Confidence 489999999999999999999999999999999888664 8887544444555666 55555 999999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC--CCCceEEEEeCCCCCCChhhcCCCCceEEEe-C
Q 014244 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE--NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 297 (428)
Q Consensus 221 iDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~--~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~ 297 (428)
||++..+..|+.. +.|+++||+.+|..+...|...+ .++|++|+|+|..++||.||+- ||+.+-. -
T Consensus 426 IDKm~ss~rGDPa---------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEiI~lsg 494 (782)
T COG0466 426 IDKMGSSFRGDPA---------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEVIRLSG 494 (782)
T ss_pred hhhccCCCCCChH---------HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceeeeeecC
Confidence 9999887654443 67899999999999998887654 5899999999999999999995 9998777 9
Q ss_pred CCHHHHHHHHHHhccCC
Q 014244 298 PTREDRIGVCKGIFRND 314 (428)
Q Consensus 298 P~~eeR~~Il~~~~~~~ 314 (428)
.+.+|..+|.+.|+-+.
T Consensus 495 Yt~~EKl~IAk~~LiPk 511 (782)
T COG0466 495 YTEDEKLEIAKRHLIPK 511 (782)
T ss_pred CChHHHHHHHHHhcchH
Confidence 99999999999998653
No 42
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.4e-19 Score=187.24 Aligned_cols=192 Identities=17% Similarity=0.245 Sum_probs=140.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccC---------CCCC-hHHHHHHHHHHHHHHHHhCCc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG---------NAGE-PAKLIRQRYREAADIIKKGKM 213 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~---------~~Ge-~~~~Ir~~F~~A~~~i~~~~p 213 (428)
.|--.-+++||+||||+|||+++++||..+|..|+..|.+.+.+. |+|. +.++|. -.+.. +...|
T Consensus 433 rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq-~LK~v----~t~NP 507 (906)
T KOG2004|consen 433 RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQ-CLKKV----KTENP 507 (906)
T ss_pred cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHH-HHHhh----CCCCc
Confidence 344456799999999999999999999999999999998877543 7887 445553 34444 44454
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC--CCCCceEEEEeCCCCCCChhhcCCCCc
Q 014244 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~--~~~~V~VI~TTN~~~~Ld~ALlR~gRf 291 (428)
+++|||||++.....|+.. +.|+++||+.+|..+...|... +.++|.+|||+|..+.||+||+- ||
T Consensus 508 -liLiDEvDKlG~g~qGDPa---------sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM 575 (906)
T KOG2004|consen 508 -LILIDEVDKLGSGHQGDPA---------SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM 575 (906)
T ss_pred -eEEeehhhhhCCCCCCChH---------HHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh
Confidence 9999999999843333322 6789999999999988887764 46899999999999999999985 99
Q ss_pred eEEEe-CCCHHHHHHHHHHhccCCCCCHhHHHHHhcCCChhhHHhHHHHHhhhhHHHHHHHHHhhcCccchhh
Q 014244 292 EKFYW-APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKS 363 (428)
Q Consensus 292 d~~i~-~P~~eeR~~Il~~~~~~~~l~~~~la~lt~gfsgadL~~~~alra~~~~~~v~~~i~~~~~e~~~~~ 363 (428)
+.+-. -...++..+|.+.|+..... .-+|.+.+-++.- ..+....|.+|+++.|++++.+.
T Consensus 576 EvIelsGYv~eEKv~IA~~yLip~a~-------~~~gl~~e~v~is----~~al~~lI~~YcrEaGVRnLqk~ 637 (906)
T KOG2004|consen 576 EVIELSGYVAEEKVKIAERYLIPQAL-------KDCGLKPEQVKIS----DDALLALIERYCREAGVRNLQKQ 637 (906)
T ss_pred heeeccCccHHHHHHHHHHhhhhHHH-------HHcCCCHHhcCcc----HHHHHHHHHHHHHHHhHHHHHHH
Confidence 88666 88999999999999854211 1223333322211 11223446677777777777653
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-18 Score=175.72 Aligned_cols=186 Identities=16% Similarity=0.205 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhhhC-CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHH
Q 014244 130 DKLVVHITKNFMSL-PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 208 (428)
Q Consensus 130 d~~~~~i~K~~l~~-~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i 208 (428)
.+.+-+++...... ..-.+.+.||+|||||||||+.|+-+|...|+.+-.+.++++. ..--+....|+++|+.|
T Consensus 364 e~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTkiH~lFDWa---- 438 (630)
T KOG0742|consen 364 EKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKIHKLFDWA---- 438 (630)
T ss_pred HHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHHHHHHHHH----
Confidence 34455554443322 2333558999999999999999999999999999999999875 22223456799999999
Q ss_pred H-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC
Q 014244 209 K-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 287 (428)
Q Consensus 209 ~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR 287 (428)
+ ..+.-+|||||.|++...|..+--.......++.+|+.- ......++++++||+|..||.|+-
T Consensus 439 kkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT--------------GdqSrdivLvlAtNrpgdlDsAV~- 503 (630)
T KOG0742|consen 439 KKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT--------------GDQSRDIVLVLATNRPGDLDSAVN- 503 (630)
T ss_pred hhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh--------------cccccceEEEeccCCccchhHHHH-
Confidence 7 445568999999999888752222223334556555321 133467889999999999999997
Q ss_pred CCCceEEEe--CCCHHHHHHHHHHhccCC---------------------------CCC----HhHHHHHhcCCChhhHH
Q 014244 288 DGRMEKFYW--APTREDRIGVCKGIFRND---------------------------NVA----DDDIVKLVDTFPGQSID 334 (428)
Q Consensus 288 ~gRfd~~i~--~P~~eeR~~Il~~~~~~~---------------------------~l~----~~~la~lt~gfsgadL~ 334 (428)
.|+|..++ +|..++|..++..|+.+. +.+ +.+.++.|+||||.+|.
T Consensus 504 -DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREia 582 (630)
T KOG0742|consen 504 -DRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIA 582 (630)
T ss_pred -hhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHH
Confidence 49999998 999999999987776310 001 44589999999999997
Q ss_pred hH
Q 014244 335 FF 336 (428)
Q Consensus 335 ~~ 336 (428)
-+
T Consensus 583 kL 584 (630)
T KOG0742|consen 583 KL 584 (630)
T ss_pred HH
Confidence 43
No 44
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.75 E-value=5e-17 Score=180.79 Aligned_cols=165 Identities=21% Similarity=0.316 Sum_probs=119.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc---------cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~---------s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (428)
..+||+||||||||++|++||++++.+++.++.+.+. ..|+|.....+.+.|..+ ....| ||||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~----~~~~~-villDE 422 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA----KTKNP-LFLLDE 422 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh----CcCCC-EEEEec
Confidence 4799999999999999999999999999998765542 357777766777777776 44444 899999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc--cCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-C
Q 014244 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN--KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 297 (428)
Q Consensus 221 iDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~--~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~ 297 (428)
||++.....+. ....|++++|+.++..+...+. ....+++++|+|||.++.||++|++ ||+.+.. .
T Consensus 423 idk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~vi~~~~ 491 (775)
T TIGR00763 423 IDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RMEVIELSG 491 (775)
T ss_pred hhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--CeeEEecCC
Confidence 99998643211 1346778888544333222221 1234789999999999999999997 8875444 8
Q ss_pred CCHHHHHHHHHHhcc-----C-----C--CCCHhHHHHHhcCCCh
Q 014244 298 PTREDRIGVCKGIFR-----N-----D--NVADDDIVKLVDTFPG 330 (428)
Q Consensus 298 P~~eeR~~Il~~~~~-----~-----~--~l~~~~la~lt~gfsg 330 (428)
|+.+++.+|++.++. . . .++.+.+..++.+|+.
T Consensus 492 ~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~ 536 (775)
T TIGR00763 492 YTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTR 536 (775)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcCh
Confidence 899999999987752 1 1 3455567777666653
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.73 E-value=5e-17 Score=158.66 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=101.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---C----CCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g----~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
+..++||||||||||++|+++|+++ + .+++.++++++.+.|+|+.+..++++|..| .++||||||+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~VL~IDE~ 114 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKA-------LGGVLFIDEA 114 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhc-------cCCEEEEech
Confidence 3578999999999999999999874 2 368889999999999999988888888876 3579999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhcCCCCceEEEe
Q 014244 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGRMEKFYW 296 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-----~~Ld~ALlR~gRfd~~i~ 296 (428)
|.+.... .. .. ++....+|++.++ ....++.+|++++.. ..++|+|.+ ||+..+.
T Consensus 115 ~~L~~~~--~~--~~-~~~~i~~Ll~~~e-------------~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~ 174 (261)
T TIGR02881 115 YSLARGG--EK--DF-GKEAIDTLVKGME-------------DNRNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISID 174 (261)
T ss_pred hhhccCC--cc--ch-HHHHHHHHHHHHh-------------ccCCCEEEEecCCcchhHHHHhcChHHHh--ccceEEE
Confidence 9986321 11 11 2223345555555 223445566655332 246889887 8877666
Q ss_pred --CCCHHHHHHHHHHhccCCC
Q 014244 297 --APTREDRIGVCKGIFRNDN 315 (428)
Q Consensus 297 --~P~~eeR~~Il~~~~~~~~ 315 (428)
.++.+++.+|++.++...+
T Consensus 175 f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 175 FPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred ECCCCHHHHHHHHHHHHHHcC
Confidence 6788999999998887654
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.71 E-value=1e-16 Score=159.10 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=105.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CC----CeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKM---GI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el---g~----~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
..+||+||||||||++|+++|+.+ |. +++.++.+++.++|+|+++..++.+|+.| .++||||||+|
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~ggVLfIDE~~ 132 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MGGVLFIDEAY 132 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc-------cCCEEEEEccc
Confidence 458999999999999999999985 22 58899999999999999887777777766 35799999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCCceEEEe-
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW- 296 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gRfd~~i~- 296 (428)
.+...++.. .....+..+|+.+++ ....++.||++++... .++|+|.| ||+..++
T Consensus 133 ~l~~~~~~~----~~~~e~~~~L~~~me-------------~~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F 193 (287)
T CHL00181 133 YLYKPDNER----DYGSEAIEILLQVME-------------NQRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDF 193 (287)
T ss_pred hhccCCCcc----chHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEc
Confidence 986543211 122445556777766 1234567777776422 34688987 8988777
Q ss_pred -CCCHHHHHHHHHHhccCCC
Q 014244 297 -APTREDRIGVCKGIFRNDN 315 (428)
Q Consensus 297 -~P~~eeR~~Il~~~~~~~~ 315 (428)
.|+.+++.+|+..++...+
T Consensus 194 ~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 194 PDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred CCcCHHHHHHHHHHHHHHhc
Confidence 8899999999999987643
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.69 E-value=2.9e-16 Score=155.50 Aligned_cols=141 Identities=11% Similarity=0.116 Sum_probs=106.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC-------CCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg-------~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
..++||+||||||||++|+++|+.+. -+++.++++++.+++.|+++..++++|+.| .+++|||||+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi 130 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA-------MGGVLFIDEA 130 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc-------cCcEEEEech
Confidence 45899999999999999999998852 268899999999999999888777777766 4589999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC--CC---CCChhhcCCCCceEEEe
Q 014244 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND--FS---TLYAPLIRDGRMEKFYW 296 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~--~~---~Ld~ALlR~gRfd~~i~ 296 (428)
+.+...+.. ......+...|+++++ ....++.||++++. ++ .++|+|.| ||+..+.
T Consensus 131 ~~L~~~~~~----~~~~~~~~~~Ll~~le-------------~~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~ 191 (284)
T TIGR02880 131 YYLYRPDNE----RDYGQEAIEILLQVME-------------NQRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVD 191 (284)
T ss_pred hhhccCCCc----cchHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEE
Confidence 988654321 1123345556777776 22356677787653 23 24789998 8887777
Q ss_pred --CCCHHHHHHHHHHhccCCC
Q 014244 297 --APTREDRIGVCKGIFRNDN 315 (428)
Q Consensus 297 --~P~~eeR~~Il~~~~~~~~ 315 (428)
.++.+++..|++.++....
T Consensus 192 fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 192 FPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred eCCcCHHHHHHHHHHHHHHhc
Confidence 7789999999999987643
No 48
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.8e-15 Score=162.21 Aligned_cols=175 Identities=14% Similarity=0.142 Sum_probs=142.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
+.+....+||+|+||||||++++++|.++|+|++.+++.++.+...+..+..+...|.+| +...|+||||-++|.+
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a----~~~~pavifl~~~dvl 502 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRA----RRCSPAVLFLRNLDVL 502 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHH----hhcCceEEEEecccee
Confidence 345567899999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEeCCCHHHHH
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI 304 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~P~~eeR~ 304 (428)
..+..++.. ..+.+.+-.++. ........+++++|+||+..+.|++.+.+..+++..+..|+.++|.
T Consensus 503 ~id~dgged-----~rl~~~i~~~ls--------~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl 569 (953)
T KOG0736|consen 503 GIDQDGGED-----ARLLKVIRHLLS--------NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRL 569 (953)
T ss_pred eecCCCchh-----HHHHHHHHHHHh--------cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHH
Confidence 866553222 222222211111 1111245688999999999999999999988887777799999999
Q ss_pred HHHHHhccCCCCC----HhHHHHHhcCCChhhHHhH
Q 014244 305 GVCKGIFRNDNVA----DDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 305 ~Il~~~~~~~~l~----~~~la~lt~gfsgadL~~~ 336 (428)
+|++.++....++ ...+++.+.||+-++++-+
T Consensus 570 ~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l 605 (953)
T KOG0736|consen 570 EILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEAL 605 (953)
T ss_pred HHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999998776555 5569999999999999854
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-15 Score=162.97 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=141.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.+..|||+||+|||||.|+++++++. -+++..++++.+..+-.....+.++..|.++ -..+|+||++|++|.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~----~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA----LWYAPSIIVLDDLDC 505 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHH----HhhCCcEEEEcchhh
Confidence 46689999999999999999999995 4567789999887555555566777788888 899999999999999
Q ss_pred ccCCC-CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 224 GAGRM-GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 224 ~~~~r-~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
+++.. ..+++..+..+++..+|.+++. .+. ..+..+.+|+|.+....|+|-|..|++|+..+. .|+.
T Consensus 506 l~~~s~~e~~q~~~~~~rla~flnqvi~---------~y~-~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 506 LASASSNENGQDGVVSERLAAFLNQVIK---------IYL-KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred hhccCcccCCcchHHHHHHHHHHHHHHH---------HHH-ccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence 98832 3456677777888888877766 111 344668999999999999999999999999888 8899
Q ss_pred HHHHHHHHHhccCCCCC-----HhHHHHHhcCCChhhHHhH
Q 014244 301 EDRIGVCKGIFRNDNVA-----DDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 301 eeR~~Il~~~~~~~~l~-----~~~la~lt~gfsgadL~~~ 336 (428)
.+|.+||+.++.+...+ .+-++..|+||...||..|
T Consensus 576 ~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 576 TRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHH
Confidence 99999999888764322 3338999999999999866
No 50
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.63 E-value=2.4e-15 Score=166.49 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=120.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~I 215 (428)
...+++|+||||||||++++++|+.+ +..++.++.+.+. .+|.|+.+..++.+|+++ ....|+|
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~----~~~~~~I 277 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEI----EKEPNAI 277 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHH----hccCCeE
Confidence 34578999999999999999999997 7788888888887 578999999999999998 6667999
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhcCCCC
Q 014244 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGR 290 (428)
Q Consensus 216 LfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-----~~Ld~ALlR~gR 290 (428)
||||||+.+.+...... .. ..+...|...+. ...+.+|++||.. -.+|+||.| |
T Consensus 278 LfiDEih~l~~~g~~~~-~~---~~~~~~L~~~l~---------------~g~i~~IgaTt~~e~~~~~~~d~al~r--R 336 (731)
T TIGR02639 278 LFIDEIHTIVGAGATSG-GS---MDASNLLKPALS---------------SGKLRCIGSTTYEEYKNHFEKDRALSR--R 336 (731)
T ss_pred EEEecHHHHhccCCCCC-cc---HHHHHHHHHHHh---------------CCCeEEEEecCHHHHHHHhhhhHHHHH--h
Confidence 99999999987643111 11 112223322222 3568899999973 357999999 8
Q ss_pred ceEEEe-CCCHHHHHHHHHHhccC----C--CCCHhH---HHHHhcCC------ChhhHHhHH
Q 014244 291 MEKFYW-APTREDRIGVCKGIFRN----D--NVADDD---IVKLVDTF------PGQSIDFFG 337 (428)
Q Consensus 291 fd~~i~-~P~~eeR~~Il~~~~~~----~--~l~~~~---la~lt~gf------sgadL~~~~ 337 (428)
|..+.. .|+.+++.+|++.+... . .++.+. ++.++..| +.-.|+++.
T Consensus 337 f~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld 399 (731)
T TIGR02639 337 FQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVID 399 (731)
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHH
Confidence 886555 99999999999865532 2 344443 66666665 444566553
No 51
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.62 E-value=8.7e-15 Score=162.58 Aligned_cols=147 Identities=20% Similarity=0.288 Sum_probs=112.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccccc---------CCCCChHHHHHHHHHHHHHHHHhCCceEEEec
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMIN 219 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s---------~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfID 219 (428)
...++|+||||||||+++++||+.++.+++.++.+...+ .|.|.....+.+.+..+ ... .+|||||
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~----~~~-~~villD 423 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV----GVK-NPLFLLD 423 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc----CCC-CCEEEEE
Confidence 347999999999999999999999999999888766532 35666544555555555 333 4589999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc--CCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-
Q 014244 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 296 (428)
Q Consensus 220 EiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~--~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~- 296 (428)
|+|++.....+. ....|++++|+.++..+...|.. .+.++|.+|+|||... |++||+. ||+.+.+
T Consensus 424 Eidk~~~~~~g~---------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~aLl~--R~~ii~~~ 491 (784)
T PRK10787 424 EIDKMSSDMRGD---------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLD--RMEVIRLS 491 (784)
T ss_pred ChhhcccccCCC---------HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CCHHHhc--ceeeeecC
Confidence 999987653221 23578889998777776655443 3568999999999984 9999996 9987666
Q ss_pred CCCHHHHHHHHHHhcc
Q 014244 297 APTREDRIGVCKGIFR 312 (428)
Q Consensus 297 ~P~~eeR~~Il~~~~~ 312 (428)
.++.++..+|++.++.
T Consensus 492 ~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 492 GYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 8899999999988884
No 52
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=9.1e-15 Score=154.92 Aligned_cols=174 Identities=21% Similarity=0.251 Sum_probs=147.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.++.+|++++++||||||||++++++|.+ +..+..+++++..+++.|+++..++..|..+ +...|+++++||+|+
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~ii~~d~~~~ 87 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEA----EKLAPSIIFIDEIDA 87 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHH----HHhCCCeEeechhhh
Confidence 57889999999999999999999999999 7777889999999999999999999999999 888999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCHH
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~e 301 (428)
+.+.+.. ....+..+.+. .+...++ +.. ... +.++..||++..+++++.|+|||++.+. .|+..
T Consensus 88 ~~~~~~~-~~~~~~~~v~~-~l~~~~d--------~~~---~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (494)
T COG0464 88 LAPKRSS-DQGEVERRVVA-QLLALMD--------GLK---RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEA 153 (494)
T ss_pred cccCccc-cccchhhHHHH-HHHHhcc--------ccc---CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHH
Confidence 9999874 33344444444 4444444 442 345 8899999999999999999999999999 99999
Q ss_pred HHHHHHHHhccC----CCCCHhHHHHHhcCCChhhHHhH
Q 014244 302 DRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 302 eR~~Il~~~~~~----~~l~~~~la~lt~gfsgadL~~~ 336 (428)
.|.+|+..+... .+.+.+.++..+.||.++++..+
T Consensus 154 ~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 154 GRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHH
Confidence 999998777643 35667889999999999999854
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.59 E-value=2.1e-14 Score=136.80 Aligned_cols=144 Identities=16% Similarity=0.166 Sum_probs=88.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~ 227 (428)
..-.+|||||||||||+||+.||++++.++...+++.+. .... +..++.. .....|||||||..+
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~-----k~~d-l~~il~~------l~~~~ILFIDEIHRl--- 113 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE-----KAGD-LAAILTN------LKEGDILFIDEIHRL--- 113 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-------SCHH-HHHHHHT--------TT-EEEECTCCC----
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh-----hHHH-HHHHHHh------cCCCcEEEEechhhc---
Confidence 345899999999999999999999999999999987543 1111 2222222 245679999999654
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCcc-ccCCCccc----cCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 228 MGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYN----KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 228 r~~~~~~~~~~~~v~~~L~~lld~~~~-v~l~~~~~----~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
+..++..|+..+++=.. +-+..... .-..++.-+|++|++...|.+||+- ||-.... ..+.
T Consensus 114 ----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~ 181 (233)
T PF05496_consen 114 ----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSE 181 (233)
T ss_dssp -----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----TH
T ss_pred ----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCH
Confidence 24455667766663221 11111100 0123567899999999999999975 7776554 8999
Q ss_pred HHHHHHHHHhccCCCCCH
Q 014244 301 EDRIGVCKGIFRNDNVAD 318 (428)
Q Consensus 301 eeR~~Il~~~~~~~~l~~ 318 (428)
++..+|++......+++.
T Consensus 182 ~el~~Iv~r~a~~l~i~i 199 (233)
T PF05496_consen 182 EELAKIVKRSARILNIEI 199 (233)
T ss_dssp HHHHHHHHHCCHCTT-EE
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 999999987776665553
No 54
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.54 E-value=7.9e-14 Score=140.47 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=101.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
.++..+|||||||||||++|+++|++++..+..++++.+.. ...+...+.. ...++||||||+|.+..
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~------l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 116 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHh------cccCCEEEEecHhhcch
Confidence 45678999999999999999999999999888777664331 1122233322 34678999999998743
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCC-ccccCCCcccc----CCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCC
Q 014244 227 RMGGTTQYTVNNQMVNATLMNIADNP-TCVQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (428)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~-~~v~l~~~~~~----~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 299 (428)
.. ...|..++++. ..+.++..... ...+++.+|++||++..++++|++ ||...+. .|+
T Consensus 117 ~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~ 181 (328)
T PRK00080 117 VV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYT 181 (328)
T ss_pred HH-------------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCC
Confidence 21 11233333211 01111111000 122457899999999999999876 7766555 999
Q ss_pred HHHHHHHHHHhccCCCC--CHhH---HHHHhcCCCh
Q 014244 300 REDRIGVCKGIFRNDNV--ADDD---IVKLVDTFPG 330 (428)
Q Consensus 300 ~eeR~~Il~~~~~~~~l--~~~~---la~lt~gfsg 330 (428)
.+++.+|++......++ +.+. |++.+.|.+.
T Consensus 182 ~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR 217 (328)
T PRK00080 182 VEELEKIVKRSARILGVEIDEEGALEIARRSRGTPR 217 (328)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCch
Confidence 99999999988766544 4433 5555666553
No 55
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.53 E-value=6.5e-14 Score=154.85 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=104.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~I 215 (428)
.+..+||+||||||||++|+++|... +..++.++.+.+. .+|.|+.+..++.+|+.+ ....++|
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l----~~~~~~I 281 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNSI 281 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH----HhcCCCE
Confidence 34567999999999999999999874 4556666666665 467889899999999887 6778899
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCC
Q 014244 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGR 290 (428)
Q Consensus 216 LfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gR 290 (428)
||||||+.+++.+..... ..-+.++|..++. ..++.+|++||.++ .+|+||.| |
T Consensus 282 LfIDEIh~L~g~g~~~~g----~~d~~nlLkp~L~---------------~g~i~vIgATt~~E~~~~~~~D~AL~r--R 340 (758)
T PRK11034 282 LFIDEIHTIIGAGAASGG----QVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_pred EEeccHHHHhccCCCCCc----HHHHHHHHHHHHh---------------CCCeEEEecCChHHHHHHhhccHHHHh--h
Confidence 999999999876531111 1112223332322 35689999999865 57999998 9
Q ss_pred ceEEEe-CCCHHHHHHHHHHhcc
Q 014244 291 MEKFYW-APTREDRIGVCKGIFR 312 (428)
Q Consensus 291 fd~~i~-~P~~eeR~~Il~~~~~ 312 (428)
|+.+.. .|+.+++..|++.+..
T Consensus 341 Fq~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 341 FQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred CcEEEeCCCCHHHHHHHHHHHHH
Confidence 986555 9999999999987653
No 56
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.52 E-value=1.1e-13 Score=155.37 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=116.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEeccccccc--CCCCChHHHHHHHHHHHHHHHH-hCCceE
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIK-KGKMCC 215 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~s--~~~Ge~~~~Ir~~F~~A~~~i~-~~~p~I 215 (428)
..+++|+||||||||++|+.+|..+ +.+++.++.+.+.. ++.|+.+..++.+|.++ + ...++|
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~----~~~~~~~I 283 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEV----KASPQPII 283 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHH----HhcCCCeE
Confidence 3478999999999999999999986 24567777777653 68899999999999987 5 357899
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhcCCCC
Q 014244 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGR 290 (428)
Q Consensus 216 LfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-----~~Ld~ALlR~gR 290 (428)
|||||++.+.+.++...+... ..+|... -..+.+.+|+||+.. -.+|+||.| |
T Consensus 284 LfIDEih~l~~~g~~~~~~d~-----~n~Lkp~---------------l~~G~l~~IgaTT~~e~~~~~~~d~AL~r--R 341 (852)
T TIGR03345 284 LFIDEAHTLIGAGGQAGQGDA-----ANLLKPA---------------LARGELRTIAATTWAEYKKYFEKDPALTR--R 341 (852)
T ss_pred EEEeChHHhccCCCccccccH-----HHHhhHH---------------hhCCCeEEEEecCHHHHhhhhhccHHHHH--h
Confidence 999999999876542222111 1122111 124568899999864 358999999 8
Q ss_pred ceEEEe-CCCHHHHHHHHHHhccC----CCC--CHhH---HHHHhcCC------ChhhHHhHHH
Q 014244 291 MEKFYW-APTREDRIGVCKGIFRN----DNV--ADDD---IVKLVDTF------PGQSIDFFGA 338 (428)
Q Consensus 291 fd~~i~-~P~~eeR~~Il~~~~~~----~~l--~~~~---la~lt~gf------sgadL~~~~a 338 (428)
|..+.. .|+.+++..|++.+... .++ +.+. ++.++++| ++..||++..
T Consensus 342 f~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdllde 405 (852)
T TIGR03345 342 FQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDT 405 (852)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHH
Confidence 876555 99999999997665532 233 3333 66777766 5556776543
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.52 E-value=7.6e-14 Score=156.78 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=106.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEE
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCL 216 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~IL 216 (428)
...++|+||||||||++|+++|..+ +.+++.++.+.+. .+|.|+.++.++.+|.+.. +...++||
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~---~~~~~~IL 275 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNVIL 275 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHH---HcCCCeEE
Confidence 4478899999999999999999997 7788888888776 4688999999999998751 24678999
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCCc
Q 014244 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 291 (428)
Q Consensus 217 fIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gRf 291 (428)
||||++.+.+...+..... ....|.. . -..+.+.+|+||+..+ .+|+||.| ||
T Consensus 276 fIDEih~l~~~~~~~~~~d-----~~~~lkp------------~---l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf 333 (857)
T PRK10865 276 FIDELHTMVGAGKADGAMD-----AGNMLKP------------A---LARGELHCVGATTLDEYRQYIEKDAALER--RF 333 (857)
T ss_pred EEecHHHhccCCCCccchh-----HHHHhcc------------h---hhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hC
Confidence 9999999987643211111 1222211 1 2346789999999877 58999999 99
Q ss_pred eEEEe-CCCHHHHHHHHHHhcc
Q 014244 292 EKFYW-APTREDRIGVCKGIFR 312 (428)
Q Consensus 292 d~~i~-~P~~eeR~~Il~~~~~ 312 (428)
+.++. .|+.+++..|++.+..
T Consensus 334 ~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 334 QKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred CEEEeCCCCHHHHHHHHHHHhh
Confidence 87666 9999999999987754
No 58
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.50 E-value=2.9e-13 Score=134.19 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=98.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~ 227 (428)
.+..++||||||||||++|+++|++++..+..+.++.+.. .. .+...+. ....+.||||||++.+...
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~-----~~-~l~~~l~------~~~~~~vl~iDEi~~l~~~ 96 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK-----PG-DLAAILT------NLEEGDVLFIDEIHRLSPA 96 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----ch-hHHHHHH------hcccCCEEEEehHhhhCHH
Confidence 4567999999999999999999999998877666543321 11 1112211 1345789999999887532
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCc-cccCCCcccc----CCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--CCCH
Q 014244 228 MGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 228 r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~----~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 300 (428)
. ...|.+++++-. .+.++..... ...+.+.+|++||++..+++++++ ||...+. .|+.
T Consensus 97 ~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~ 161 (305)
T TIGR00635 97 V-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTV 161 (305)
T ss_pred H-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCH
Confidence 1 122333333110 1111111000 123457899999999999999886 7766554 8999
Q ss_pred HHHHHHHHHhccCC--CCCHhH---HHHHhcCCCh
Q 014244 301 EDRIGVCKGIFRND--NVADDD---IVKLVDTFPG 330 (428)
Q Consensus 301 eeR~~Il~~~~~~~--~l~~~~---la~lt~gfsg 330 (428)
+++.+|++...... .++.+. |++.+.|.+-
T Consensus 162 ~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR 196 (305)
T TIGR00635 162 EELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPR 196 (305)
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc
Confidence 99999998877654 344444 5555556553
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=99.50 E-value=3.6e-13 Score=142.58 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=103.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH-h-CCceEEEecccccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K-GKMCCLMINDLDAG 224 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~-~-~~p~ILfIDEiDa~ 224 (428)
.+++.+|||||||||||++|+++|++++.+++.+++++..+ ...++.....+..... . ..+.||+|||+|.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 34789999999999999999999999999999999876431 2344444444422111 1 26789999999988
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh-hhcCCCCceEEEe-CCCHHH
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYW-APTRED 302 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~-ALlR~gRfd~~i~-~P~~ee 302 (428)
..... . .. ...|.++++ ..+.++|++||++..+++ +|.+ |+..+.. .|+.++
T Consensus 111 ~~~~d----~----~~-~~aL~~~l~---------------~~~~~iIli~n~~~~~~~k~Lrs--r~~~I~f~~~~~~~ 164 (482)
T PRK04195 111 HGNED----R----GG-ARAILELIK---------------KAKQPIILTANDPYDPSLRELRN--ACLMIEFKRLSTRS 164 (482)
T ss_pred ccccc----h----hH-HHHHHHHHH---------------cCCCCEEEeccCccccchhhHhc--cceEEEecCCCHHH
Confidence 65321 0 01 122333333 234689999999999988 5544 5544444 899999
Q ss_pred HHHHHHHhccCCC--CCHhHHHHHhcCCC
Q 014244 303 RIGVCKGIFRNDN--VADDDIVKLVDTFP 329 (428)
Q Consensus 303 R~~Il~~~~~~~~--l~~~~la~lt~gfs 329 (428)
+..+++.++...+ ++.+.+..++....
T Consensus 165 i~~~L~~i~~~egi~i~~eaL~~Ia~~s~ 193 (482)
T PRK04195 165 IVPVLKRICRKEGIECDDEALKEIAERSG 193 (482)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 9999998887654 45555666665543
No 60
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.49 E-value=3.6e-13 Score=151.02 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=121.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCc
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKM 213 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~~~~p 213 (428)
.+.+.+++|+||||||||++|+.+|..+ +..++.++.+.+. .+|.|+.+..++.+|+++ ....+
T Consensus 197 r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~----~~~~~ 272 (821)
T CHL00095 197 RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEI----QENNN 272 (821)
T ss_pred ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHH----HhcCC
Confidence 3456689999999999999999999986 4678889988876 578899999999999998 66789
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCC
Q 014244 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRD 288 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~ 288 (428)
+|||||||+.+.+..+..... -+...|...+ ....+.+|++||..+ ..|++|.|
T Consensus 273 ~ILfiDEih~l~~~g~~~g~~-----~~a~lLkp~l---------------~rg~l~~IgaTt~~ey~~~ie~D~aL~r- 331 (821)
T CHL00095 273 IILVIDEVHTLIGAGAAEGAI-----DAANILKPAL---------------ARGELQCIGATTLDEYRKHIEKDPALER- 331 (821)
T ss_pred eEEEEecHHHHhcCCCCCCcc-----cHHHHhHHHH---------------hCCCcEEEEeCCHHHHHHHHhcCHHHHh-
Confidence 999999999998764311111 1122221111 245688999998764 58999998
Q ss_pred CCceEEEe-CCCHHHHHHHHHHhcc------CCCCCHhH---HHHHhcCCC------hhhHHhHHHHHh
Q 014244 289 GRMEKFYW-APTREDRIGVCKGIFR------NDNVADDD---IVKLVDTFP------GQSIDFFGALRA 341 (428)
Q Consensus 289 gRfd~~i~-~P~~eeR~~Il~~~~~------~~~l~~~~---la~lt~gfs------gadL~~~~alra 341 (428)
||..+.. .|+.++...|++.+.. ...++.+. ++.++.+|- +..|+++....+
T Consensus 332 -Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 332 -RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred -cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 8887655 8999999898765432 12244443 667777764 446666544333
No 61
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=2.7e-13 Score=152.43 Aligned_cols=168 Identities=20% Similarity=0.225 Sum_probs=118.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc--cCCCCChHHHHHHHHHHHHHHHHh-CCce
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKMC 214 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~~-~~p~ 214 (428)
....++|+||||||||++++++|..+ +.+++.++.+.+. .+|.|+.++.++.+|.++ .. ..++
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~----~~~~~~~ 268 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEV----TKSEGQI 268 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHH----HhcCCCe
Confidence 34577899999999999999999985 6678888877775 468899899999999877 43 4699
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCC
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 289 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~g 289 (428)
|||||||+.+.+....... .-....|... .....+.+|++||..+ .+|++|.|
T Consensus 269 ILfIDEih~l~~~g~~~~~-----~d~~~~Lk~~---------------l~~g~i~~IgaTt~~e~r~~~~~d~al~r-- 326 (852)
T TIGR03346 269 ILFIDELHTLVGAGKAEGA-----MDAGNMLKPA---------------LARGELHCIGATTLDEYRKYIEKDAALER-- 326 (852)
T ss_pred EEEeccHHHhhcCCCCcch-----hHHHHHhchh---------------hhcCceEEEEeCcHHHHHHHhhcCHHHHh--
Confidence 9999999999765321111 1112222111 2246789999999773 58999999
Q ss_pred CceEEEe-CCCHHHHHHHHHHhccC----CCC--CHh---HHHHHhcCC------ChhhHHhHHHHHh
Q 014244 290 RMEKFYW-APTREDRIGVCKGIFRN----DNV--ADD---DIVKLVDTF------PGQSIDFFGALRA 341 (428)
Q Consensus 290 Rfd~~i~-~P~~eeR~~Il~~~~~~----~~l--~~~---~la~lt~gf------sgadL~~~~alra 341 (428)
||..++. .|+.+++..|++.+... .++ ..+ ..+.++.+| |...||++...++
T Consensus 327 Rf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 327 RFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred cCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHH
Confidence 8987666 99999999998876433 222 332 356777776 4446666544333
No 62
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.49 E-value=2.4e-13 Score=141.21 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=77.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc-cCCCCChH-HHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~-s~~~Ge~~-~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
...+||+||||||||++|+++|+.++.+|+.++++.+. ..|+|+.. ..+..++..+...+....++||||||||++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 46899999999999999999999999999999998875 47888753 44555555443334466889999999999987
Q ss_pred CCCCCc-ccchhhHHHHHHHHHhhcC
Q 014244 227 RMGGTT-QYTVNNQMVNATLMNIADN 251 (428)
Q Consensus 227 ~r~~~~-~~~~~~~~v~~~L~~lld~ 251 (428)
+..+.+ ...+...-+++.|+++|+.
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 643111 1233344677888899973
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.48 E-value=5.9e-13 Score=135.10 Aligned_cols=124 Identities=22% Similarity=0.212 Sum_probs=93.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 229 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~ 229 (428)
..++||||||||||++|+.||..++.+|..+|+..- +.+-+|.++++|......++..|||||||..+-.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK--- 118 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK--- 118 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh---
Confidence 478999999999999999999999999999987532 3577999999996666677889999999965422
Q ss_pred CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhcCCCCceEEEe-CCCHHHHHHH
Q 014244 230 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGV 306 (428)
Q Consensus 230 ~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT--N~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~I 306 (428)
+| +.+|+-. .+...|++|++| |-.-.|.+||+. |+-.+.. .-+.++...+
T Consensus 119 --~Q--------QD~lLp~---------------vE~G~iilIGATTENPsF~ln~ALlS--R~~vf~lk~L~~~di~~~ 171 (436)
T COG2256 119 --AQ--------QDALLPH---------------VENGTIILIGATTENPSFELNPALLS--RARVFELKPLSSEDIKKL 171 (436)
T ss_pred --hh--------hhhhhhh---------------hcCCeEEEEeccCCCCCeeecHHHhh--hhheeeeecCCHHHHHHH
Confidence 22 2233222 234567777755 666789999997 5555555 7788888888
Q ss_pred HHHh
Q 014244 307 CKGI 310 (428)
Q Consensus 307 l~~~ 310 (428)
++..
T Consensus 172 l~ra 175 (436)
T COG2256 172 LKRA 175 (436)
T ss_pred HHHH
Confidence 7763
No 64
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=3.7e-13 Score=139.09 Aligned_cols=161 Identities=14% Similarity=0.119 Sum_probs=104.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeE---------------Eeccccc--ccCC-CCChHHHHHHHHHHHHH
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI---------------MMSAGEL--ESGN-AGEPAKLIRQRYREAAD 206 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i---------------~vs~s~L--~s~~-~Ge~~~~Ir~~F~~A~~ 206 (428)
+.+.|.++||+||||+|||++|+++|+.+.+..- .-+.+++ .... ..-....||++++.+..
T Consensus 32 ~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~ 111 (394)
T PRK07940 32 GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAAR 111 (394)
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHh
Confidence 3457899999999999999999999998655310 0001111 0000 01123457778777622
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhc
Q 014244 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALl 286 (428)
.-..+...|+||||+|.+... . ...|+..++ ++..++++|++|++++.|.|+++
T Consensus 112 ~p~~~~~kViiIDead~m~~~------------a-anaLLk~LE-------------ep~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 112 RPSTGRWRIVVIEDADRLTER------------A-ANALLKAVE-------------EPPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred CcccCCcEEEEEechhhcCHH------------H-HHHHHHHhh-------------cCCCCCeEEEEECChHHChHHHH
Confidence 212456679999999987322 1 134555555 44456777788888999999998
Q ss_pred CCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHh---HHHHHhcCCChhhHHhH
Q 014244 287 RDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 287 R~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~---~la~lt~gfsgadL~~~ 336 (428)
+ |+-.+.. .|+.++..+++.... +++.+ .++.++.|.++..+.+.
T Consensus 166 S--Rc~~i~f~~~~~~~i~~~L~~~~---~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 166 S--RCRHVALRTPSVEAVAEVLVRRD---GVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred h--hCeEEECCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 7 6655555 888988887776322 34444 47888899998887764
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=5.9e-13 Score=145.05 Aligned_cols=167 Identities=12% Similarity=0.162 Sum_probs=109.1
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccC
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESG 188 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~ 188 (428)
+....++++.. -+.+..+|||||+|||||++|+++|+.+++. ++.++.+
T Consensus 24 Vv~~L~~aL~~--gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa----- 96 (830)
T PRK07003 24 VVRALTHALDG--GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAA----- 96 (830)
T ss_pred HHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccc-----
Confidence 34444555543 3568899999999999999999999998753 1222211
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 014244 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (428)
Q Consensus 189 ~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 268 (428)
...+...+|++.+.+...-..++..|+||||+|.+... . .+.|+..|+ +...+
T Consensus 97 -s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~------------A-~NALLKtLE-------------EPP~~ 149 (830)
T PRK07003 97 -SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH------------A-FNAMLKTLE-------------EPPPH 149 (830)
T ss_pred -ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH------------H-HHHHHHHHH-------------hcCCC
Confidence 01123446666665521112455689999999976321 1 123444444 44567
Q ss_pred ceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC--HhH---HHHHhcCCChhhHHh
Q 014244 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDD---IVKLVDTFPGQSIDF 335 (428)
Q Consensus 269 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~--~~~---la~lt~gfsgadL~~ 335 (428)
+.+|++||++..|.+.++. ||.++-+ .++.++..++|+.++..+++. .+. |++.++|--...|.+
T Consensus 150 v~FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8999999999999999886 7877766 788889999998888776654 333 445555544444443
No 66
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.46 E-value=1.6e-12 Score=129.58 Aligned_cols=149 Identities=18% Similarity=0.294 Sum_probs=98.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEeccccccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGA 225 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~-~~~p~ILfIDEiDa~~ 225 (428)
+.|..+||+||||+|||++|+++|++++.+++.+++++ . . ...++........... ...+.||||||+|.+.
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-----~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~ 113 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-----R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG 113 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-----c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc
Confidence 45778888999999999999999999999999888875 1 1 2223332222211111 2468899999998762
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHH
Q 014244 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRI 304 (428)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~ 304 (428)
.. ..+..|..+++ ....++++|+|||.++.+++++++ ||..+.. .|+.+++.
T Consensus 114 ~~------------~~~~~L~~~le-------------~~~~~~~~Ilt~n~~~~l~~~l~s--R~~~i~~~~p~~~~~~ 166 (316)
T PHA02544 114 LA------------DAQRHLRSFME-------------AYSKNCSFIITANNKNGIIEPLRS--RCRVIDFGVPTKEEQI 166 (316)
T ss_pred CH------------HHHHHHHHHHH-------------hcCCCceEEEEcCChhhchHHHHh--hceEEEeCCCCHHHHH
Confidence 21 01233444444 223567899999999999999987 7776666 99999998
Q ss_pred HHHHHhc-------cCC--CCCHhHHHHHhcCCC
Q 014244 305 GVCKGIF-------RND--NVADDDIVKLVDTFP 329 (428)
Q Consensus 305 ~Il~~~~-------~~~--~l~~~~la~lt~gfs 329 (428)
+|++.+. ... .++.+.+..++....
T Consensus 167 ~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 167 EMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 7755432 222 444445555554433
No 67
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.46 E-value=5.7e-13 Score=137.95 Aligned_cols=191 Identities=18% Similarity=0.240 Sum_probs=113.6
Q ss_pred ccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEecccccc
Q 014244 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELE 186 (428)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~ 186 (428)
.|+|++.+.+ + ....+...++.+...++. ....++||||||||||+|+++|++++ +..++++++.++.
T Consensus 106 ~~tfd~fi~g----~--~n~~a~~~~~~~~~~~~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~ 178 (405)
T TIGR00362 106 KYTFDNFVVG----K--SNRLAHAAALAVAENPGK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT 178 (405)
T ss_pred CCcccccccC----C--cHHHHHHHHHHHHhCcCc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence 4666664322 1 124456667777665542 34579999999999999999999986 6778888887765
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 014244 187 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266 (428)
Q Consensus 187 s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~ 266 (428)
..+...-.......|... ...+.+|+|||++.+.++.. . ...++.+++ ..+ .
T Consensus 179 ~~~~~~~~~~~~~~~~~~-----~~~~dlLiiDDi~~l~~~~~--~---------~~~l~~~~n--------~~~----~ 230 (405)
T TIGR00362 179 NDFVNALRNNKMEEFKEK-----YRSVDLLLIDDIQFLAGKER--T---------QEEFFHTFN--------ALH----E 230 (405)
T ss_pred HHHHHHHHcCCHHHHHHH-----HHhCCEEEEehhhhhcCCHH--H---------HHHHHHHHH--------HHH----H
Confidence 432211000000112211 12367999999998865421 1 122333333 110 1
Q ss_pred CCceEEEEeCC-CCC---CChhhcCCCCceE--EEe--CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCCChhhHHhH
Q 014244 267 PRVPIIVTGND-FST---LYAPLIRDGRMEK--FYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 267 ~~V~VI~TTN~-~~~---Ld~ALlR~gRfd~--~i~--~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfsgadL~~~ 336 (428)
.+.++|+|+|. |.. +++.|.. ||.. .+. .|+.++|.+|++..+... .++.+.+.-+++.+.+.--+..
T Consensus 231 ~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 231 NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 12356666664 443 5567764 7753 333 999999999999988755 4556666767776665433333
Q ss_pred HHH
Q 014244 337 GAL 339 (428)
Q Consensus 337 ~al 339 (428)
+++
T Consensus 309 ~~l 311 (405)
T TIGR00362 309 GAL 311 (405)
T ss_pred HHH
Confidence 443
No 68
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.45 E-value=3.9e-13 Score=141.17 Aligned_cols=193 Identities=19% Similarity=0.236 Sum_probs=118.2
Q ss_pred cccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEeccccc
Q 014244 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (428)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L 185 (428)
..|+|++.+.+. ....+...++.+...++. ....++||||||||||+|++++++++ +..++++++.++
T Consensus 117 ~~~tfd~fv~g~------~n~~a~~~~~~~~~~~~~-~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 117 PKYTFDNFVVGK------SNRLAHAAALAVAENPGK-AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred CCCcccccccCC------CcHHHHHHHHHHHhCcCc-cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 345666644331 123456667777665553 33569999999999999999999997 566888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 014244 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (428)
Q Consensus 186 ~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 265 (428)
.+.+...........|... ...+.+|+|||++.+.++.. . .+.+..++..+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~-----~~~~dlLiiDDi~~l~~~~~--~-----~~~l~~~~n~l~~--------------- 242 (450)
T PRK00149 190 TNDFVNALRNNTMEEFKEK-----YRSVDVLLIDDIQFLAGKER--T-----QEEFFHTFNALHE--------------- 242 (450)
T ss_pred HHHHHHHHHcCcHHHHHHH-----HhcCCEEEEehhhhhcCCHH--H-----HHHHHHHHHHHHH---------------
Confidence 6443221110001112211 23578999999998865431 1 1222222211111
Q ss_pred CCCceEEEEeCCC-CC---CChhhcCCCCce--EEEe--CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCCChhhHHh
Q 014244 266 NPRVPIIVTGNDF-ST---LYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 266 ~~~V~VI~TTN~~-~~---Ld~ALlR~gRfd--~~i~--~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfsgadL~~ 335 (428)
.+.++|+|+|.+ .. +++.|.. ||. ..+. .|+.++|.+|++..+... .++.+.+.-+++.+.+.--+.
T Consensus 243 -~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 243 -AGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred -CCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHH
Confidence 123466666654 33 6677764 775 2333 999999999999988754 567777888888877754444
Q ss_pred HHHHH
Q 014244 336 FGALR 340 (428)
Q Consensus 336 ~~alr 340 (428)
.++|.
T Consensus 320 ~~~l~ 324 (450)
T PRK00149 320 EGALN 324 (450)
T ss_pred HHHHH
Confidence 44444
No 69
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=4.3e-13 Score=138.31 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=119.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc-cCCCC-ChHHHHHHHHHHHHH-------------------
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAG-EPAKLIRQRYREAAD------------------- 206 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~-s~~~G-e~~~~Ir~~F~~A~~------------------- 206 (428)
.|+++||+||||||||++|+++|+.++.+|+.+++..+. .+|+| +.+..++.+|..|..
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae 125 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAE 125 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 578999999999999999999999999999999999886 48999 577888888887711
Q ss_pred ------HH------------------------------------------------------------------------
Q 014244 207 ------II------------------------------------------------------------------------ 208 (428)
Q Consensus 207 ------~i------------------------------------------------------------------------ 208 (428)
++
T Consensus 126 ~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T TIGR00390 126 ERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLG 205 (441)
T ss_pred HHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhc
Confidence 00
Q ss_pred -------------------------------------H-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhc
Q 014244 209 -------------------------------------K-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 250 (428)
Q Consensus 209 -------------------------------------~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld 250 (428)
. ..+..|+||||||+++.+.. .....+...-|++.|+.++.
T Consensus 206 ~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkilE 284 (441)
T TIGR00390 206 GQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIVE 284 (441)
T ss_pred CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhcccccccc
Confidence 0 12456999999999987653 22345566678888888888
Q ss_pred CCccccCCCccccCCCCCceEEEEeC----CCCCCChhhcCCCCceEEEe--CCCHHHHHHHH
Q 014244 251 NPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW--APTREDRIGVC 307 (428)
Q Consensus 251 ~~~~v~l~~~~~~~~~~~V~VI~TTN----~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il 307 (428)
..+... .+......+|.+||+.- .|+.|-|.|. |||-.... .++.++-..||
T Consensus 285 Gt~v~~---k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 285 GSTVNT---KYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred Cceeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 433221 22345668889998764 5777888887 89999988 88999998886
No 70
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.45 E-value=6e-13 Score=137.93 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=85.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~-s~~~Ge~-~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
+..+||+||||||||++|+++|+.++++|..++++.+. .+|+|.. +..+...+..+...+....++||||||+|++..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 35899999999999999999999999999999988875 4688875 444555554432233456789999999999987
Q ss_pred CCCCCc-ccchhhHHHHHHHHHhhcCCccccCC-CccccCCCCCceEEEEeCC
Q 014244 227 RMGGTT-QYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGND 277 (428)
Q Consensus 227 ~r~~~~-~~~~~~~~v~~~L~~lld~~~~v~l~-~~~~~~~~~~V~VI~TTN~ 277 (428)
++...+ ...+...-+++.|+++++. +.+.++ ...+..+..+.++|.|+|-
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG-~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEG-TVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhc-cceecccCCCccccCCCeEEEEcCCc
Confidence 643111 1223334577788888863 222111 1111223355677778775
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=8.1e-13 Score=138.68 Aligned_cols=145 Identities=14% Similarity=0.217 Sum_probs=96.4
Q ss_pred HHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccCCCCC
Q 014244 137 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGE 192 (428)
Q Consensus 137 ~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~~~Ge 192 (428)
.++.+... +.|..+|||||||||||++|+++|+.++.. ++.+++. ...
T Consensus 30 L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaa------s~~ 101 (484)
T PRK14956 30 LQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAA------SNR 101 (484)
T ss_pred HHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechh------hcc
Confidence 34444332 457789999999999999999999998763 1112211 011
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 014244 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (428)
Q Consensus 193 ~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 272 (428)
....+|++.+.+...-..++..|+||||+|.+... . ...|+..++ ++..++.+|
T Consensus 102 gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~------------A-~NALLKtLE-------------EPp~~viFI 155 (484)
T PRK14956 102 GIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ------------S-FNALLKTLE-------------EPPAHIVFI 155 (484)
T ss_pred cHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH------------H-HHHHHHHhh-------------cCCCceEEE
Confidence 23455665555422112456789999999976321 1 223444444 445778899
Q ss_pred EEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 273 VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 273 ~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
++||.+..|++++++ |+.++.. .++.++-.+.++.++...++.
T Consensus 156 LaTte~~kI~~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~ 199 (484)
T PRK14956 156 LATTEFHKIPETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENVQ 199 (484)
T ss_pred eecCChhhccHHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999987 7776666 777878778887777666553
No 72
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=2.5e-12 Score=134.97 Aligned_cols=194 Identities=15% Similarity=0.143 Sum_probs=115.5
Q ss_pred ccccccCcCCCCCchhhHHHHHHHHHHHhhhCCC---CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccc
Q 014244 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPN---IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (428)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g---~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L 185 (428)
.|+|++.+-+. . .+.+...++.+...++ ......++||||||+|||+|++++++++ +..+++++..++
T Consensus 107 ~~tFdnFv~g~--~----N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f 180 (445)
T PRK12422 107 LMTFANFLVTP--E----NDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF 180 (445)
T ss_pred cccccceeeCC--c----HHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence 46667755331 1 2233444555543221 1233579999999999999999999985 678888887766
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 014244 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (428)
Q Consensus 186 ~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 265 (428)
...+...-...-...|+.. .....||+|||++.+.++.. ++ +.+..++..+.+
T Consensus 181 ~~~~~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~~k~~--~q-----eelf~l~N~l~~--------------- 233 (445)
T PRK12422 181 TEHLVSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFSGKGA--TQ-----EEFFHTFNSLHT--------------- 233 (445)
T ss_pred HHHHHHHHhcchHHHHHHH-----cccCCEEEEcchhhhcCChh--hH-----HHHHHHHHHHHH---------------
Confidence 4322111000000122221 34578999999998765421 11 222222211111
Q ss_pred CCCceEEEEeCCC----CCCChhhcCCCCce--EEEe--CCCHHHHHHHHHHhccCCC--CCHhHHHHHhcCCChhhHHh
Q 014244 266 NPRVPIIVTGNDF----STLYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 266 ~~~V~VI~TTN~~----~~Ld~ALlR~gRfd--~~i~--~P~~eeR~~Il~~~~~~~~--l~~~~la~lt~gfsgadL~~ 335 (428)
.+.++|+|||.+ ..+++.|.+ ||. ..+. .|+.++|..|++......+ ++.+.+.-++..+++.--+.
T Consensus 234 -~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L 310 (445)
T PRK12422 234 -EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSL 310 (445)
T ss_pred -CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Confidence 224688888764 456788876 664 4444 8999999999998877654 55666776778877644344
Q ss_pred HHHHHh
Q 014244 336 FGALRA 341 (428)
Q Consensus 336 ~~alra 341 (428)
.++|..
T Consensus 311 ~g~l~~ 316 (445)
T PRK12422 311 LHALTL 316 (445)
T ss_pred HHHHHH
Confidence 455443
No 73
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=1.3e-12 Score=140.39 Aligned_cols=184 Identities=16% Similarity=0.189 Sum_probs=113.3
Q ss_pred cccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEeccccc
Q 014244 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (428)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L 185 (428)
..|+|+|.+.+.. ...+...++.+...++. ....|+|||++|||||+|+++||+++ +..+++++..++
T Consensus 283 ~~~TFDnFvvG~s------N~~A~aaa~avae~~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 283 PKYTFDTFVIGAS------NRFAHAAAVAVAEAPAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred CCCCHhhhcCCCc------cHHHHHHHHHHHhCccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 3466676554321 12233344444443332 22349999999999999999999986 567889998877
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 014244 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (428)
Q Consensus 186 ~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 265 (428)
.+.+...-.......|.+. -..+.+|+||||+.+.++.. .+ .. |+++++ .. .
T Consensus 356 ~~el~~al~~~~~~~f~~~-----y~~~DLLlIDDIq~l~gke~--tq-----ee----LF~l~N--------~l----~ 407 (617)
T PRK14086 356 TNEFINSIRDGKGDSFRRR-----YREMDILLVDDIQFLEDKES--TQ-----EE----FFHTFN--------TL----H 407 (617)
T ss_pred HHHHHHHHHhccHHHHHHH-----hhcCCEEEEehhccccCCHH--HH-----HH----HHHHHH--------HH----H
Confidence 7544322111111123321 33568999999998876532 11 22 333333 11 1
Q ss_pred CCCceEEEEeCCC----CCCChhhcCCCCce--EEEe--CCCHHHHHHHHHHhccCCCC--CHhHHHHHhcCCChh
Q 014244 266 NPRVPIIVTGNDF----STLYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFPGQ 331 (428)
Q Consensus 266 ~~~V~VI~TTN~~----~~Ld~ALlR~gRfd--~~i~--~P~~eeR~~Il~~~~~~~~l--~~~~la~lt~gfsga 331 (428)
..+..||+|||.+ ..+++.|.. ||. ..+. .|+.+.|.+||+..+...++ +.+.+.-++..++..
T Consensus 408 e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 408 NANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred hcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCC
Confidence 1234688889875 357888886 554 4444 89999999999998876654 455566666776654
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=9.7e-13 Score=141.72 Aligned_cols=167 Identities=13% Similarity=0.184 Sum_probs=109.8
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------------eEEeccc
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAG 183 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~-----------------------------~i~vs~s 183 (428)
+....++++.. .+.+..+||+||+|||||++|+++|+.+++. ++.++++
T Consensus 24 vv~~L~~al~~--gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa 101 (700)
T PRK12323 24 VVRALTHALEQ--QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA 101 (700)
T ss_pred HHHHHHHHHHh--CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccc
Confidence 33444555543 3568899999999999999999999998762 1122211
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc
Q 014244 184 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 263 (428)
Q Consensus 184 ~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~ 263 (428)
. ......+|++.+.....-..++..|+||||+|.+... . .+.|+..|+
T Consensus 102 s------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~------------A-aNALLKTLE------------- 149 (700)
T PRK12323 102 S------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH------------A-FNAMLKTLE------------- 149 (700)
T ss_pred c------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH------------H-HHHHHHhhc-------------
Confidence 0 1123456666655422222556789999999976321 1 123444455
Q ss_pred CCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCH--hH---HHHHhcCCChhhHHh
Q 014244 264 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVAD--DD---IVKLVDTFPGQSIDF 335 (428)
Q Consensus 264 ~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~--~~---la~lt~gfsgadL~~ 335 (428)
++..++.+|++||+++.|.+.++. ||.++.. .++.++..+.++.++...++.. +. |++.++|-....+.+
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 456788999999999999999986 7766666 8888888888888776655543 22 555555544444443
No 75
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.42 E-value=8.6e-13 Score=136.14 Aligned_cols=153 Identities=22% Similarity=0.267 Sum_probs=118.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccccc-CCCC-ChHHHHHHHHHHHHH--------------------
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAG-EPAKLIRQRYREAAD-------------------- 206 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s-~~~G-e~~~~Ir~~F~~A~~-------------------- 206 (428)
|.++||+||||||||++|+++|+.++++|+.++++++.. +|+| +.+..++.+|..|..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ 129 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEE 129 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998875 7999 567888888888710
Q ss_pred -----H--------------------------------------------------------------------------
Q 014244 207 -----I-------------------------------------------------------------------------- 207 (428)
Q Consensus 207 -----~-------------------------------------------------------------------------- 207 (428)
+
T Consensus 130 ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (443)
T PRK05201 130 RILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPK 209 (443)
T ss_pred HHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCC
Confidence 0
Q ss_pred ----------------------------------HH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCC
Q 014244 208 ----------------------------------IK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 252 (428)
Q Consensus 208 ----------------------------------i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~ 252 (428)
+. .....|+||||||+++.+.++ +...+...-|++.|+.++...
T Consensus 210 ~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~ 288 (443)
T PRK05201 210 KKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGS 288 (443)
T ss_pred CCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccccc
Confidence 01 124569999999999977532 234566677888898888843
Q ss_pred ccccCCCccccCCCCCceEEEEe----CCCCCCChhhcCCCCceEEEe--CCCHHHHHHHH
Q 014244 253 TCVQLPGMYNKEENPRVPIIVTG----NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVC 307 (428)
Q Consensus 253 ~~v~l~~~~~~~~~~~V~VI~TT----N~~~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il 307 (428)
+... .+......+|.+||+. ..|+.|-|.|. |||-.... .++.++...||
T Consensus 289 ~v~~---k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 289 TVST---KYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred eeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 3221 2234556888899876 35777888898 79999988 88999998886
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4e-12 Score=134.26 Aligned_cols=147 Identities=12% Similarity=0.179 Sum_probs=96.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------CeEEecccccccCCCCChHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 202 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~------------------------~~i~vs~s~L~s~~~Ge~~~~Ir~~F~ 202 (428)
+.|..+|||||||||||++|+++|+.++. .++.++++. ..+...+|.+..
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~ 107 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRD 107 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHH
Confidence 46778999999999999999999999765 233333321 122345666555
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014244 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
.+...-..+...||||||+|.+... ....|+..++ .+...+.+|++||.+..++
T Consensus 108 ~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE-------------~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 108 AVGYRPMEGKYKVYIIDEVHMLTKE-------------AFNALLKTLE-------------EPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred HHhhChhcCCeEEEEEEChHHhHHH-------------HHHHHHHHHH-------------hCCCcEEEEEEeCChHhhh
Confidence 5421111345679999999876321 1233444444 2334567777888888999
Q ss_pred hhhcCCCCceEEEe-CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcC
Q 014244 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRND--NVADDDIVKLVDT 327 (428)
Q Consensus 283 ~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~g 327 (428)
+++++ |+..+-. .|+.++...+++..+... .++.+.+..++..
T Consensus 162 ~~L~S--R~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 162 PTIIS--RCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred HHHhc--CcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99987 6655444 889999999988887654 4555555555543
No 77
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.40 E-value=4.6e-12 Score=123.74 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=106.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
...=.+|||||||.|||+||+.||+|+|.++-..+++.|. .+..+ ..++. .-....|||||||..+.+
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-----K~gDl-aaiLt------~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-----KPGDL-AAILT------NLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-----ChhhH-HHHHh------cCCcCCeEEEehhhhcCh
Confidence 3456899999999999999999999999999999988765 12111 11111 244567999999977643
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc--------CCCCCceEEEEeCCCCCCChhhcCCCCceEEEe--
Q 014244 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--------EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 296 (428)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~--------~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-- 296 (428)
. +...|+-.+++ .+++=+.++ -+.+..-+|++|-+...|..||.- ||-....
T Consensus 118 ~-------------vEE~LYpaMED---f~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rle 179 (332)
T COG2255 118 A-------------VEEVLYPAMED---FRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLE 179 (332)
T ss_pred h-------------HHHHhhhhhhh---eeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeee
Confidence 2 33445444441 112111111 234566789999999999999975 7766555
Q ss_pred CCCHHHHHHHHHHhccCCCC--CHh---HHHHHhcCCChhhH
Q 014244 297 APTREDRIGVCKGIFRNDNV--ADD---DIVKLVDTFPGQSI 333 (428)
Q Consensus 297 ~P~~eeR~~Il~~~~~~~~l--~~~---~la~lt~gfsgadL 333 (428)
..+.++..+|+.......++ +.+ +||+.+.|-+-=..
T Consensus 180 fY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 180 FYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHH
Confidence 99999999998877655444 333 37777777665433
No 78
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.39 E-value=7.9e-12 Score=129.95 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=95.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r 228 (428)
+..++||||||||||++|+++|+.++..|+.+++... ....++.+++.+......+...||||||+|.+...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~- 107 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA- 107 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-
Confidence 3479999999999999999999999999999887532 23456677777644334557889999999875321
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhcCCCCceEEEe-CCCHHHHHH
Q 014244 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIG 305 (428)
Q Consensus 229 ~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT--N~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~ 305 (428)
....|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.++...
T Consensus 108 ------------~q~~LL~~le---------------~~~iilI~att~n~~~~l~~aL~S--R~~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 108 ------------QQDALLPHVE---------------DGTITLIGATTENPSFEVNPALLS--RAQVFELKPLSEEDIEQ 158 (413)
T ss_pred ------------HHHHHHHHhh---------------cCcEEEEEeCCCChhhhccHHHhc--cceeeEeCCCCHHHHHH
Confidence 1223333333 1345566654 445589999987 6644444 888999999
Q ss_pred HHHHhccCC-----CCCHhHHHHHhc
Q 014244 306 VCKGIFRND-----NVADDDIVKLVD 326 (428)
Q Consensus 306 Il~~~~~~~-----~l~~~~la~lt~ 326 (428)
+++..+... .++.+.+..+..
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~ 184 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALAR 184 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 888776431 455554444433
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=2.3e-12 Score=139.17 Aligned_cols=148 Identities=13% Similarity=0.151 Sum_probs=99.5
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccCC
Q 014244 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGN 189 (428)
Q Consensus 134 ~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~~ 189 (428)
....++.+.. .+.+..+||+||||||||++|+++|+.+++. ++.++++.
T Consensus 24 v~~L~~aI~~--grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs----- 96 (702)
T PRK14960 24 SRALSSALER--GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS----- 96 (702)
T ss_pred HHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc-----
Confidence 3444455543 3568899999999999999999999998762 22222221
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 014244 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (428)
Q Consensus 190 ~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V 269 (428)
......+|++...+.-.-..++..|+||||+|.+... ....|+..++ +....+
T Consensus 97 -~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NALLKtLE-------------EPP~~v 149 (702)
T PRK14960 97 -RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNALLKTLE-------------EPPEHV 149 (702)
T ss_pred -cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHHh-------------cCCCCc
Confidence 0123446665554421112456789999999876321 1224545555 344667
Q ss_pred eEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 270 ~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
.+|++||++..+++++++ |+.++-. .++.++..+.++.++...++.
T Consensus 150 ~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 150 KFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred EEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999875 7776666 889999998888888766544
No 80
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=3.1e-12 Score=134.13 Aligned_cols=182 Identities=16% Similarity=0.297 Sum_probs=108.6
Q ss_pred ccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEecccccc
Q 014244 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELE 186 (428)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~ 186 (428)
.|+|++.+.+ +. ...+...++.+...++. ...++||||||||||+|+++|++++ +..++++++.++.
T Consensus 101 ~~tFdnFv~g----~~--n~~a~~~~~~~~~~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~ 172 (440)
T PRK14088 101 DYTFENFVVG----PG--NSFAYHAALEVAKNPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_pred CCcccccccC----Cc--hHHHHHHHHHHHhCcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4667775533 21 13345556666655553 3459999999999999999999985 4567888887665
Q ss_pred cCCCCChH-HHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 014244 187 SGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (428)
Q Consensus 187 s~~~Ge~~-~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 265 (428)
..+...-. ..+ ..|... -...+.+|+|||++.+.+... .+ ..+..++..+.+
T Consensus 173 ~~~~~~~~~~~~-~~f~~~----~~~~~dvLlIDDi~~l~~~~~--~q-----~elf~~~n~l~~--------------- 225 (440)
T PRK14088 173 NDLVDSMKEGKL-NEFREK----YRKKVDVLLIDDVQFLIGKTG--VQ-----TELFHTFNELHD--------------- 225 (440)
T ss_pred HHHHHHHhcccH-HHHHHH----HHhcCCEEEEechhhhcCcHH--HH-----HHHHHHHHHHHH---------------
Confidence 33321100 001 112221 123588999999998765421 11 122222222212
Q ss_pred CCCceEEEEeC-CCCC---CChhhcCCCCce--EEEe--CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCCChh
Q 014244 266 NPRVPIIVTGN-DFST---LYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 331 (428)
Q Consensus 266 ~~~V~VI~TTN-~~~~---Ld~ALlR~gRfd--~~i~--~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfsga 331 (428)
.+..+|+||| .|.. +.+.+.. ||. ..+. .|+.+.|.+|++...... .++.+.+.-++..+++.
T Consensus 226 -~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 226 -SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred -cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccC
Confidence 1235666664 5544 4455654 554 2333 999999999999887654 55666677777777764
No 81
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.37 E-value=2.2e-11 Score=119.27 Aligned_cols=146 Identities=16% Similarity=0.262 Sum_probs=91.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccc------cccCCCCChHHHHHHHHHHH--------------HHHHH
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGNAGEPAKLIRQRYREA--------------ADIIK 209 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~------L~s~~~Ge~~~~Ir~~F~~A--------------~~~i~ 209 (428)
..+||+||||||||++|+++|+.+|.+++.+++.. +...+.|...+.+...|-.. ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46899999999999999999999999999886543 33333332222211111100 00011
Q ss_pred -hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc----CCCCCceEEEEeCCC-----C
Q 014244 210 -KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK----EENPRVPIIVTGNDF-----S 279 (428)
Q Consensus 210 -~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~----~~~~~V~VI~TTN~~-----~ 279 (428)
...+.+|+||||+.... .+...|+.+++.- .+.+++.... ...++..||+|+|.. .
T Consensus 102 A~~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~-~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKP-------------ETNNVLLSVFEEG-VLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHcCCEEEEcchhhCCH-------------HHHHHHHHHhcCC-eEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 22356999999986422 2345566777632 2223322111 122466799999976 3
Q ss_pred CCChhhcCCCCceEEEe-CCCHHHHHHHHHHhc
Q 014244 280 TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIF 311 (428)
Q Consensus 280 ~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~ 311 (428)
.++++|++ ||-.+.. .|+.++-.+|++.++
T Consensus 168 ~l~~aL~~--R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hcEEEECCCCCHHHHHHHHHHhh
Confidence 67899997 7755444 999999999998876
No 82
>PLN03025 replication factor C subunit; Provisional
Probab=99.36 E-value=7.1e-12 Score=125.92 Aligned_cols=160 Identities=13% Similarity=0.189 Sum_probs=99.6
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCeEEecccccccCCCCChHHHHHHHHHHHHHH---
Q 014244 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI--- 207 (428)
Q Consensus 136 i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg-----~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~--- 207 (428)
..+.++.... .| .+|||||||||||++|+++|+++. ..++.+++++.. | ...++.........
T Consensus 24 ~L~~~~~~~~--~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~----~--~~~vr~~i~~~~~~~~~ 94 (319)
T PLN03025 24 RLQVIARDGN--MP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR----G--IDVVRNKIKMFAQKKVT 94 (319)
T ss_pred HHHHHHhcCC--Cc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc----c--HHHHHHHHHHHHhcccc
Confidence 3444544332 23 589999999999999999999972 234555554322 1 12344433322110
Q ss_pred HHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC
Q 014244 208 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 287 (428)
Q Consensus 208 i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR 287 (428)
.....+.|++|||+|.+.... ++.|...++ .......+|++||..+.+.++|..
T Consensus 95 ~~~~~~kviiiDE~d~lt~~a-------------q~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 95 LPPGRHKIVILDEADSMTSGA-------------QQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred CCCCCeEEEEEechhhcCHHH-------------HHHHHHHHh-------------cccCCceEEEEeCCccccchhHHH
Confidence 012457899999999864321 233444444 222345688899999999999886
Q ss_pred CCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHHHHHhcCCChhhH
Q 014244 288 DGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSI 333 (428)
Q Consensus 288 ~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~la~lt~gfsgadL 333 (428)
|+..+-. .|+.++...+++.++...+ ++.+.+..++....| |+
T Consensus 149 --Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-Dl 194 (319)
T PLN03025 149 --RCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DM 194 (319)
T ss_pred --hhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 5544433 8899999999988887665 456666666655443 44
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=7.7e-12 Score=138.60 Aligned_cols=183 Identities=13% Similarity=0.175 Sum_probs=112.4
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeE-E-----e--cccc
Q 014244 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-M-----M--SAGE 184 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i-~-----v--s~s~ 184 (428)
-+|+.++|. ..+....++++... +.|..+|||||||||||++|+++|+.+++.-. . . ++-.
T Consensus 13 ~tFddIIGQ---------e~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 13 ATFEQMVGQ---------SHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CCHHHhcCc---------HHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 344666665 33344455665433 56888999999999999999999999876411 0 0 0000
Q ss_pred cccC-------CCC---ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCcc
Q 014244 185 LESG-------NAG---EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 254 (428)
Q Consensus 185 L~s~-------~~G---e~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~ 254 (428)
+.+. +-+ .....+|++...+...-..++..|+||||++.+... ....|+..+.
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-------------AqNALLKtLE---- 144 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-------------SFNALLKTLE---- 144 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHHh----
Confidence 0000 001 123445665555421112456679999999986321 2234555555
Q ss_pred ccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHh--H---HHHHhcCC
Q 014244 255 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD--D---IVKLVDTF 328 (428)
Q Consensus 255 v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~--~---la~lt~gf 328 (428)
++...+.+|++|+.+..|.+.++. ||-++.. .++.++..+.++.++...++..+ . |++.+.|-
T Consensus 145 ---------EPP~~vrFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd 213 (944)
T PRK14949 145 ---------EPPEHVKFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS 213 (944)
T ss_pred ---------ccCCCeEEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 455677888889999999999886 7766555 77888888888877765555433 3 55555554
Q ss_pred ChhhHH
Q 014244 329 PGQSID 334 (428)
Q Consensus 329 sgadL~ 334 (428)
.+..+.
T Consensus 214 ~R~ALn 219 (944)
T PRK14949 214 MRDALS 219 (944)
T ss_pred HHHHHH
Confidence 444443
No 84
>PRK06893 DNA replication initiation factor; Validated
Probab=99.36 E-value=4e-12 Score=122.04 Aligned_cols=146 Identities=16% Similarity=0.204 Sum_probs=89.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
..++||||||||||+|++++|+++ +....+++..... ......++. ..+..+|+|||++.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLEN------LEQQDLVCLDDLQAVIG 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhh------cccCCEEEEeChhhhcC
Confidence 368999999999999999999985 3344444443211 011112222 23457999999998765
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CCCCC---hhhcCCCCceEEEe--CCCH
Q 014244 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTLY---APLIRDGRMEKFYW--APTR 300 (428)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-~~~Ld---~ALlR~gRfd~~i~--~P~~ 300 (428)
... ....|+++++ .. ....+.++|+|+|. |..++ +.|.++.+....+. .|+.
T Consensus 106 ~~~-----------~~~~l~~l~n--------~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 106 NEE-----------WELAIFDLFN--------RI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred ChH-----------HHHHHHHHHH--------HH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 421 1123444444 11 11123345555554 66554 78887555556665 9999
Q ss_pred HHHHHHHHHhccCC--CCCHhHHHHHhcCCChh
Q 014244 301 EDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 331 (428)
Q Consensus 301 eeR~~Il~~~~~~~--~l~~~~la~lt~gfsga 331 (428)
++|.+|++...... .++.+.+.-++..+++.
T Consensus 164 e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 164 EQKIIVLQRNAYQRGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 99999999777654 45566666666666653
No 85
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.5e-11 Score=125.78 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=94.5
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec--c--------------cccccCCC--CChHHHH
Q 014244 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS--A--------------GELESGNA--GEPAKLI 197 (428)
Q Consensus 136 i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs--~--------------s~L~s~~~--Ge~~~~I 197 (428)
..++.+... +.|..+||+||||||||++|+++|+++........ + .++..-.. ......+
T Consensus 27 ~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~i 104 (363)
T PRK14961 27 AISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEM 104 (363)
T ss_pred HHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHH
Confidence 344444432 56888999999999999999999999864211100 0 01110000 0123345
Q ss_pred HHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC
Q 014244 198 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 277 (428)
Q Consensus 198 r~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~ 277 (428)
+++...+...-..+...|+||||+|.+... .. ..|+..++ ++...+.+|++|++
T Consensus 105 r~i~~~~~~~p~~~~~kviIIDEa~~l~~~------------a~-naLLk~lE-------------e~~~~~~fIl~t~~ 158 (363)
T PRK14961 105 REILDNIYYSPSKSRFKVYLIDEVHMLSRH------------SF-NALLKTLE-------------EPPQHIKFILATTD 158 (363)
T ss_pred HHHHHHHhcCcccCCceEEEEEChhhcCHH------------HH-HHHHHHHh-------------cCCCCeEEEEEcCC
Confidence 555544311001344579999999876321 11 23444444 33456678888899
Q ss_pred CCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHH
Q 014244 278 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDI 321 (428)
Q Consensus 278 ~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~l 321 (428)
++.+.+++.. |+-.+-. .|+.++..++++..+...+ ++.+.+
T Consensus 159 ~~~l~~tI~S--Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al 203 (363)
T PRK14961 159 VEKIPKTILS--RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYAL 203 (363)
T ss_pred hHhhhHHHHh--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999875 6654444 8899999999988877665 444443
No 86
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=2.1e-11 Score=124.97 Aligned_cols=162 Identities=17% Similarity=0.277 Sum_probs=95.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEeccccccc----------CCCCC----hHHHHHHHHHHHHHHH
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----------GNAGE----PAKLIRQRYREAADII 208 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~s----------~~~Ge----~~~~Ir~~F~~A~~~i 208 (428)
.|..++||||||||||++++.+++++ ++.++.+++....+ ...+. ........+....+.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 133 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL 133 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999986 56788887754321 11110 0001223333333333
Q ss_pred H-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC---CCChh
Q 014244 209 K-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAP 284 (428)
Q Consensus 209 ~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~---~Ld~A 284 (428)
. ...+.||+|||+|.+....+ . ..+. .|+++++ . ....++.+|+++|..+ .+++.
T Consensus 134 ~~~~~~~viviDE~d~l~~~~~---~-----~~l~-~l~~~~~--------~----~~~~~v~vI~i~~~~~~~~~l~~~ 192 (394)
T PRK00411 134 DERDRVLIVALDDINYLFEKEG---N-----DVLY-SLLRAHE--------E----YPGARIGVIGISSDLTFLYILDPR 192 (394)
T ss_pred HhcCCEEEEEECCHhHhhccCC---c-----hHHH-HHHHhhh--------c----cCCCeEEEEEEECCcchhhhcCHH
Confidence 4 45789999999999873221 1 2222 2223322 1 1223788999999874 46676
Q ss_pred hcCCCCceEEEe-CCCHHHHHHHHHHhccC----CCCCHhH---HHHHhcCCCh
Q 014244 285 LIRDGRMEKFYW-APTREDRIGVCKGIFRN----DNVADDD---IVKLVDTFPG 330 (428)
Q Consensus 285 LlR~gRfd~~i~-~P~~eeR~~Il~~~~~~----~~l~~~~---la~lt~gfsg 330 (428)
+.++.+...+.+ .++.++..+|++..+.. ..++.+. +++.+.+.+|
T Consensus 193 ~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 193 VKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred HHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 654322233333 88999999998877642 2344333 5555655444
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.1e-11 Score=134.72 Aligned_cols=165 Identities=14% Similarity=0.188 Sum_probs=106.6
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCe------------------------EEecccccccCC
Q 014244 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP------------------------IMMSAGELESGN 189 (428)
Q Consensus 134 ~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~------------------------i~vs~s~L~s~~ 189 (428)
....++.+... +.+..+||+||||||||++|+++|+.+++.. +.+++.. .
T Consensus 25 v~~L~~~l~~~--rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas----~ 98 (647)
T PRK07994 25 LTALANALDLG--RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS----R 98 (647)
T ss_pred HHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc----c
Confidence 33444555432 5688899999999999999999999987631 2222210 0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 014244 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (428)
Q Consensus 190 ~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V 269 (428)
.....+|++.+.+...-..+...|+||||+|.+... ....|+..+. ++...+
T Consensus 99 --~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~-------------a~NALLKtLE-------------EPp~~v 150 (647)
T PRK07994 99 --TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHV 150 (647)
T ss_pred --CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH-------------HHHHHHHHHH-------------cCCCCe
Confidence 123445665555421112456779999999876321 1234445555 455778
Q ss_pred eEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHh--H---HHHHhcCCChhhHH
Q 014244 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD--D---IVKLVDTFPGQSID 334 (428)
Q Consensus 270 ~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~--~---la~lt~gfsgadL~ 334 (428)
.+|++|+++..|.+.++. ||-.+.. .++.++....++.++...++..+ . |++.++|-.+..+.
T Consensus 151 ~FIL~Tt~~~kLl~TI~S--RC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 151 KFLLATTDPQKLPVTILS--RCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred EEEEecCCccccchHHHh--hheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 888899999999999886 7766555 88888888888888765554433 2 55555554444443
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.5e-11 Score=133.67 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=104.1
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE--e-----------ccc---ccc--cCCCCChH
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM--M-----------SAG---ELE--SGNAGEPA 194 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~--v-----------s~s---~L~--s~~~Ge~~ 194 (428)
+....++++.. -+.|.++||+||||||||++|+++|+++++.-.. . ..+ ++. +...+.+.
T Consensus 24 vv~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gV 101 (709)
T PRK08691 24 VVKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGI 101 (709)
T ss_pred HHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCH
Confidence 44445555543 3568899999999999999999999997653110 0 000 110 00112234
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE
Q 014244 195 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT 274 (428)
Q Consensus 195 ~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~T 274 (428)
..||+++..+...-..++..|+||||+|.+... . ...|+..++ +....+.+|++
T Consensus 102 d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~------------A-~NALLKtLE-------------EPp~~v~fILa 155 (709)
T PRK08691 102 DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS------------A-FNAMLKTLE-------------EPPEHVKFILA 155 (709)
T ss_pred HHHHHHHHHHHhhhhhCCcEEEEEECccccCHH------------H-HHHHHHHHH-------------hCCCCcEEEEE
Confidence 567777665421112456689999999865211 1 123444444 34466789999
Q ss_pred eCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC--HhHHHHHhc
Q 014244 275 GNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLVD 326 (428)
Q Consensus 275 TN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~--~~~la~lt~ 326 (428)
||++..+.+.++ +||-.+-. .++.++....++.++...++. .+.+..++.
T Consensus 156 Ttd~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~ 208 (709)
T PRK08691 156 TTDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGR 208 (709)
T ss_pred eCCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 999999999987 47755555 888999999999888877654 333444443
No 89
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=2.1e-11 Score=129.64 Aligned_cols=143 Identities=14% Similarity=0.209 Sum_probs=94.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec------------c--------cccccCC--CCChHHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS------------A--------GELESGN--AGEPAKLIRQRYREA 204 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs------------~--------s~L~s~~--~Ge~~~~Ir~~F~~A 204 (428)
+.|..+||+||||||||++|+++|+++++.--... + .++..-. ...+...++.+.+.+
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a 120 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESA 120 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHH
Confidence 56889999999999999999999999876321000 0 0111000 012345677777666
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 014244 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (428)
Q Consensus 205 ~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A 284 (428)
...--.+...|+||||++.+.. ... ..|+..++ ++...+.+|++|+.++.++++
T Consensus 121 ~~~P~~~~~KVvIIDEa~~Ls~------------~a~-naLLk~LE-------------epp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 121 EYKPLQGKHKIFIIDEVHMLSK------------GAF-NALLKTLE-------------EPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred HhccccCCcEEEEEEChhhcCH------------HHH-HHHHHHHh-------------hcCCCEEEEEEeCChHHhhHH
Confidence 2211245667999999987632 111 23444444 345667788888999999999
Q ss_pred hcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 285 LIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 285 LlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
++. |+.++-. .++.++...+++.++...++.
T Consensus 175 I~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 175 IIS--RCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred HHh--cceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 886 6654444 889999999999988776553
No 90
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.30 E-value=1.7e-11 Score=122.66 Aligned_cols=155 Identities=16% Similarity=0.230 Sum_probs=93.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC-----CCeEEecccccccCC-------------CCC-------hHHHHHHHHHHHH
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGN-------------AGE-------PAKLIRQRYREAA 205 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg-----~~~i~vs~s~L~s~~-------------~Ge-------~~~~Ir~~F~~A~ 205 (428)
.+|||||||||||++|+++++++. .+++.++++++.... .+. ....++.+.....
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 689999999999999999999974 346777776653221 011 0112222222221
Q ss_pred HHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 014244 206 DIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (428)
Q Consensus 206 ~~i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A 284 (428)
.... ...+.+|||||+|.+... ..+.|..+++ .......+|+|||.+..+.++
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED-------------AQQALRRIME-------------QYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHH-------------hccCCCeEEEEeCChhhCchh
Confidence 1111 234569999999876321 1123444444 112234577777777888888
Q ss_pred hcCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHHHHHhcCCChhhHH
Q 014244 285 LIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSID 334 (428)
Q Consensus 285 LlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~la~lt~gfsgadL~ 334 (428)
|.. |+..+.. .|+.++..++++.++...+ ++.+.+..++... +.++.
T Consensus 172 L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-~gdlr 221 (337)
T PRK12402 172 IRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-GGDLR 221 (337)
T ss_pred hcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHH
Confidence 876 5544443 8999999999998877655 4555566665544 34443
No 91
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.30 E-value=5.9e-12 Score=124.06 Aligned_cols=160 Identities=19% Similarity=0.295 Sum_probs=100.9
Q ss_pred CCchhhHHH----HHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------eEEecccccccCCCCC
Q 014244 123 YIAPAFMDK----LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGE 192 (428)
Q Consensus 123 ~i~~~~~d~----~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~------~i~vs~s~L~s~~~Ge 192 (428)
|.|+.|.|- .++...++-+... .-..+|||||||||||+.|++.|.++..+ +...+++.-. |.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~---~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gi 102 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRR---ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GI 102 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhc---CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----cc
Confidence 444555443 3444555555442 22379999999999999999999998762 1222333222 21
Q ss_pred hHHHHHH---HHHHHHHHHH--hC---Cc-eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc
Q 014244 193 PAKLIRQ---RYREAADIIK--KG---KM-CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 263 (428)
Q Consensus 193 ~~~~Ir~---~F~~A~~~i~--~~---~p-~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~ 263 (428)
+ .+|. .|.+...... .. .| -|++|||.|++... -+.+|.+.++
T Consensus 103 s--vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE------------- 154 (346)
T KOG0989|consen 103 S--VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTME------------- 154 (346)
T ss_pred c--chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHh-------------
Confidence 1 2222 2333211111 11 22 59999999987533 2355666666
Q ss_pred CCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHh
Q 014244 264 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD 319 (428)
Q Consensus 264 ~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~ 319 (428)
.....+.+|..||.++.|+.++.. |+.++.+ .-..+.....|+.+..+++++.+
T Consensus 155 ~~s~~trFiLIcnylsrii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d 209 (346)
T KOG0989|consen 155 DFSRTTRFILICNYLSRIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDID 209 (346)
T ss_pred ccccceEEEEEcCChhhCChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC
Confidence 334567899999999999999986 9999888 44555667778888877776644
No 92
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.30 E-value=3.3e-11 Score=133.72 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=97.1
Q ss_pred Cc-EEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccC------------CCCChHHHHHHHHHHHHHHHHhCCceE
Q 014244 149 PL-ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGKMCC 215 (428)
Q Consensus 149 p~-glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~------------~~Ge~~~~Ir~~F~~A~~~i~~~~p~I 215 (428)
|. .+||+||||||||++|+++|+.++.+++.++.+++.++ |+|.... ..+.+ .++....+|
T Consensus 483 p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~---~~l~~---~~~~~p~~V 556 (731)
T TIGR02639 483 PVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQG---GLLTE---AVRKHPHCV 556 (731)
T ss_pred CceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchh---hHHHH---HHHhCCCeE
Confidence 55 48999999999999999999999999999988776432 3332110 11112 225567789
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC----------------
Q 014244 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---------------- 279 (428)
Q Consensus 216 LfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~---------------- 279 (428)
|||||+|+..+ .+...|++++|+-... ++........+++||+|||...
T Consensus 557 vllDEieka~~-------------~~~~~Ll~~ld~g~~~--d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~ 621 (731)
T TIGR02639 557 LLLDEIEKAHP-------------DIYNILLQVMDYATLT--DNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVE 621 (731)
T ss_pred EEEechhhcCH-------------HHHHHHHHhhccCeee--cCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhH
Confidence 99999997632 2456778888842211 1221223456789999999742
Q ss_pred ---------CCChhhcCCCCceEEEe--CCCHHHHHHHHHHhcc
Q 014244 280 ---------TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 312 (428)
Q Consensus 280 ---------~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~ 312 (428)
.+.|+|+ +|+|.++. ..+.++..+|++..+.
T Consensus 622 ~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 622 SKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred HHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 2566776 59998776 7799999999877664
No 93
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.29 E-value=1.1e-12 Score=115.17 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=73.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccC--CCCChH------HHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPA------KLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~--~~Ge~~------~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
.|||+||||||||++|+.+|+.++.+++.++.+..... ..|... ......+-++ ...+++++|||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a-----~~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRA-----MRKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTT-----HHEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccc-----ccceeEEEECCcc
Confidence 48999999999999999999999999988776643211 111100 0000000011 1268999999997
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC------CceEEEEeCCCC----CCChhhcCCCCc
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP------RVPIIVTGNDFS----TLYAPLIRDGRM 291 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~------~V~VI~TTN~~~----~Ld~ALlR~gRf 291 (428)
... ..+.+.|+.++++-......+........ +..+|+|+|..+ .+++||+| ||
T Consensus 76 ~a~-------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 76 RAP-------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp G---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred cCC-------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 532 34455677777754433222221111112 489999999999 99999998 65
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.4e-11 Score=131.25 Aligned_cols=149 Identities=16% Similarity=0.220 Sum_probs=96.9
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccC
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESG 188 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~ 188 (428)
+....++++... +.|..+|||||||||||++|+++|+.+++. ++.++++.
T Consensus 24 v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas---- 97 (509)
T PRK14958 24 VVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS---- 97 (509)
T ss_pred HHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc----
Confidence 344455555433 568889999999999999999999998653 22233221
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 014244 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (428)
Q Consensus 189 ~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 268 (428)
......+|++.+.+.-.-..++..|+||||+|.+... . .+.|+..++ ++...
T Consensus 98 --~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~------------a-~naLLk~LE-------------epp~~ 149 (509)
T PRK14958 98 --RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH------------S-FNALLKTLE-------------EPPSH 149 (509)
T ss_pred --cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH------------H-HHHHHHHHh-------------ccCCC
Confidence 1123345665554411111455679999999976432 1 123444555 34466
Q ss_pred ceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 269 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
+.+|++|+++..+.+.++. |+..+-. .++.++....++.++...++.
T Consensus 150 ~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred eEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 7888899999999999875 6655544 667888777777777666554
No 95
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.29 E-value=1.9e-12 Score=119.29 Aligned_cols=126 Identities=12% Similarity=0.139 Sum_probs=86.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC----CeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~----~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
-..+||.||+|||||.+|+++|+.+.. +++.++.+++... ++....+..++..+...+......||||||||+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 357899999999999999999999996 8999999888751 1112233334433322223333349999999999
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~ 280 (428)
..+. .....+....+.+.|++++++-+... .........++++|+|||--..
T Consensus 81 ~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d--~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 81 HPSN--SGGADVSGEGVQNSLLQLLEGGTLTD--SYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp SHTT--TTCSHHHHHHHHHHHHHHHHHSEEEE--TTCCEEEGTTEEEEEEESSSTH
T ss_pred cccc--cccchhhHHHHHHHHHHHhcccceec--ccceEEEeCCceEEEecccccc
Confidence 8863 23456677788899999998432221 1112345688999999997653
No 96
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.29 E-value=6e-11 Score=120.32 Aligned_cols=140 Identities=17% Similarity=0.283 Sum_probs=87.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCeEEecccccccC----------CC--CC-------h-HHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG----------NA--GE-------P-AKLI 197 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg---------~~~i~vs~s~L~s~----------~~--Ge-------~-~~~I 197 (428)
..|..++|+||||||||++++++++++. +.++.+++....+. .. |. + .+.+
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 3466899999999999999999998753 45777776543221 10 10 1 1222
Q ss_pred HHHHHHHHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 014244 198 RQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (428)
Q Consensus 198 r~~F~~A~~~i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN 276 (428)
..+++. +. ...+.||+|||+|.+.+.. + ..+. .|+.+.+ .......++.+|++||
T Consensus 118 ~~l~~~----l~~~~~~~vlvIDE~d~L~~~~----~-----~~L~-~l~~~~~----------~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 118 RRLYKE----LNERGDSLIIVLDEIDYLVGDD----D-----DLLY-QLSRARS----------NGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHH----HHhcCCeEEEEECchhhhccCC----c-----HHHH-hHhcccc----------ccCCCCCeEEEEEEEC
Confidence 223322 23 4668899999999987321 1 1222 2222211 0112336789999999
Q ss_pred CCC---CCChhhcCCCCce-EEEe--CCCHHHHHHHHHHhcc
Q 014244 277 DFS---TLYAPLIRDGRME-KFYW--APTREDRIGVCKGIFR 312 (428)
Q Consensus 277 ~~~---~Ld~ALlR~gRfd-~~i~--~P~~eeR~~Il~~~~~ 312 (428)
+++ .+++.+.+ ||. ..+. +++.++..+|++..+.
T Consensus 174 ~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 174 DLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 986 57777765 443 2333 8899999999987764
No 97
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=3.7e-11 Score=134.13 Aligned_cols=149 Identities=12% Similarity=0.109 Sum_probs=97.5
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--------------------------eEEecccccc
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELE 186 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~--------------------------~i~vs~s~L~ 186 (428)
+....++++.. -+.+..+|||||+|||||++|+++|+.+.+. ++.+++..
T Consensus 23 v~~~L~~~i~~--~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas-- 98 (824)
T PRK07764 23 VTEPLSTALDS--GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS-- 98 (824)
T ss_pred HHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc--
Confidence 34444555543 3567889999999999999999999998752 11121110
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 014244 187 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266 (428)
Q Consensus 187 s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~ 266 (428)
-.....||.+-+.+.-.-......|+||||+|.+... -.+.|+++|+ +..
T Consensus 99 ----~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~-------------a~NaLLK~LE-------------EpP 148 (824)
T PRK07764 99 ----HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ-------------GFNALLKIVE-------------EPP 148 (824)
T ss_pred ----cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH-------------HHHHHHHHHh-------------CCC
Confidence 0123345554333311112466789999999987321 1235666666 344
Q ss_pred CCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 267 ~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
..+.+|++|+.++.|.+.|+. |+..+-+ .++.++..++|+.++...++.
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 567888888999999998875 6655555 788889888888888766553
No 98
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.28 E-value=3.6e-11 Score=133.23 Aligned_cols=142 Identities=17% Similarity=0.215 Sum_probs=95.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccccc-----CCCCChHHHH----HHHHHHHHHHHHhCCceEEEecc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-----GNAGEPAKLI----RQRYREAADIIKKGKMCCLMIND 220 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s-----~~~Ge~~~~I----r~~F~~A~~~i~~~~p~ILfIDE 220 (428)
..+||+||||||||++|+++|+.++.+++.++.+++.+ ..+|.+...+ ...+..+ ++....|||||||
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~---v~~~p~sVlllDE 565 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA---VIKHPHAVLLLDE 565 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHH---HHhCCCcEEEecc
Confidence 46999999999999999999999999999988877643 2233221100 0122222 2455679999999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC----------------------
Q 014244 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---------------------- 278 (428)
Q Consensus 221 iDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~---------------------- 278 (428)
||+.. ..+.+.|++++|+-.... .........++++|+|||.-
T Consensus 566 ieka~-------------~~v~~~LLq~ld~G~ltd--~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~ 630 (758)
T PRK11034 566 IEKAH-------------PDVFNLLLQVMDNGTLTD--NNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAME 630 (758)
T ss_pred Hhhhh-------------HHHHHHHHHHHhcCeeec--CCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHH
Confidence 99863 235667888887432211 11122344788999999932
Q ss_pred ---CCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhc
Q 014244 279 ---STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (428)
Q Consensus 279 ---~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~ 311 (428)
..+.|+|+. |+|.++. ..+.++..+|+..++
T Consensus 631 ~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 631 EIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred HHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 236677874 9997776 778888888876655
No 99
>PRK05642 DNA replication initiation factor; Validated
Probab=99.28 E-value=4.4e-11 Score=115.29 Aligned_cols=174 Identities=13% Similarity=0.197 Sum_probs=101.0
Q ss_pred ccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC
Q 014244 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG 188 (428)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~ 188 (428)
.|+|++.+.+. ...+...++++....+-.....++||||+|||||+|++++++++ +..+++++..++...
T Consensus 15 ~~tfdnF~~~~-------~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 15 DATFANYYPGA-------NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred cccccccCcCC-------hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 35566654331 13455555555432222234679999999999999999999863 667888888766532
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 014244 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (428)
Q Consensus 189 ~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 268 (428)
. ....+.. + ...+|+|||++.+.++.. ....|+.+++ .. ...+
T Consensus 88 ~--------~~~~~~~----~--~~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n--------~~----~~~g 130 (234)
T PRK05642 88 G--------PELLDNL----E--QYELVCLDDLDVIAGKAD-----------WEEALFHLFN--------RL----RDSG 130 (234)
T ss_pred h--------HHHHHhh----h--hCCEEEEechhhhcCChH-----------HHHHHHHHHH--------HH----HhcC
Confidence 1 1111111 2 225899999997755421 1123444444 11 1123
Q ss_pred ceEEEEeCC-CCCC---ChhhcCCCCce--EEE--eCCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCCChh
Q 014244 269 VPIIVTGND-FSTL---YAPLIRDGRME--KFY--WAPTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 331 (428)
Q Consensus 269 V~VI~TTN~-~~~L---d~ALlR~gRfd--~~i--~~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfsga 331 (428)
.++|+|+|. |..+ .+.|.. ||. ..+ ..|+.++|.+|++...... .++.+.+.-++..+++.
T Consensus 131 ~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 131 RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 356666664 4433 566765 652 333 3889999999998555443 45555565555555543
No 100
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=5.1e-11 Score=126.82 Aligned_cols=146 Identities=12% Similarity=0.177 Sum_probs=94.8
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------eEEecccccccCCCCC
Q 014244 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGE 192 (428)
Q Consensus 136 i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~-----------------------~i~vs~s~L~s~~~Ge 192 (428)
..++++.. -+.|..+|||||||||||++|+++|+.+.+. ++.++++. ..
T Consensus 25 ~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~ 96 (504)
T PRK14963 25 VLLAALRQ--GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NN 96 (504)
T ss_pred HHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc------cC
Confidence 33444443 2467789999999999999999999997541 22233220 11
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 014244 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (428)
Q Consensus 193 ~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 272 (428)
....+|++...+...--...+.||||||+|.+.. ... ..|+..++ .+...+.+|
T Consensus 97 ~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~------------~a~-naLLk~LE-------------ep~~~t~~I 150 (504)
T PRK14963 97 SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK------------SAF-NALLKTLE-------------EPPEHVIFI 150 (504)
T ss_pred CHHHHHHHHHHHhhccccCCCeEEEEECccccCH------------HHH-HHHHHHHH-------------hCCCCEEEE
Confidence 2345666544442211245678999999985421 112 23334444 334566788
Q ss_pred EEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 273 VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 273 ~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
++||.+..+++++.+ |+..+-. .|+.++....++.++...++.
T Consensus 151 l~t~~~~kl~~~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 151 LATTEPEKMPPTILS--RTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred EEcCChhhCChHHhc--ceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 888999999999886 6665555 889999999998888766554
No 101
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.28 E-value=2.4e-10 Score=125.86 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=97.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccccCC----------C------C-ChHHHHHHH
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGN----------A------G-EPAKLIRQR 200 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~s~~----------~------G-e~~~~Ir~~ 200 (428)
+...|+|+|+||||||.+++.+.+++ .+.++++++..+...+ . | .....+..+
T Consensus 780 pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerL 859 (1164)
T PTZ00112 780 SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRL 859 (1164)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 34456799999999999999998875 2557788875443221 0 1 122334444
Q ss_pred HHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC---
Q 014244 201 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND--- 277 (428)
Q Consensus 201 F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~--- 277 (428)
|.... -.....+||+|||||.+..+. +..|+++++-+ .....++.||+++|.
T Consensus 860 F~~L~--k~~r~v~IIILDEID~L~kK~-------------QDVLYnLFR~~----------~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 860 FNQNK--KDNRNVSILIIDEIDYLITKT-------------QKVLFTLFDWP----------TKINSKLVLIAISNTMDL 914 (1164)
T ss_pred Hhhhh--cccccceEEEeehHhhhCccH-------------HHHHHHHHHHh----------hccCCeEEEEEecCchhc
Confidence 44320 013446799999999887541 13344444411 123457899999997
Q ss_pred CCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCC--CCCHhH---HHHHhcCCCh
Q 014244 278 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRND--NVADDD---IVKLVDTFPG 330 (428)
Q Consensus 278 ~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~--~l~~~~---la~lt~gfsg 330 (428)
++.|++.+..+.+..++.+ +++.+++.+||+..+... -++.+. +|+++...+|
T Consensus 915 perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SG 973 (1164)
T PTZ00112 915 PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSG 973 (1164)
T ss_pred chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCC
Confidence 5567777776445454555 999999999998776532 344443 3444444444
No 102
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=7.8e-11 Score=126.98 Aligned_cols=160 Identities=15% Similarity=0.199 Sum_probs=105.0
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC----------------
Q 014244 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------- 176 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~---------------- 176 (428)
-+|+.++|. ..+....++.+.. .+.+..+|||||+|||||++|+.+|+.+.+.
T Consensus 13 ~~f~~viGq---------~~v~~~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 13 QTFEDVVGQ---------EHITKTLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred CcHHhccCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHH
Confidence 345666665 2233344455443 2468899999999999999999999997542
Q ss_pred --------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHh
Q 014244 177 --------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 248 (428)
Q Consensus 177 --------~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~l 248 (428)
++.+.++ .+.....+|++...+...-..+...|+||||+|.+... . ...|+..
T Consensus 82 i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~------------a-~naLLKt 142 (559)
T PRK05563 82 ITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG------------A-FNALLKT 142 (559)
T ss_pred HhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH------------H-HHHHHHH
Confidence 2222221 12334567777766521112456779999999876321 1 1234444
Q ss_pred hcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 249 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 249 ld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
++ ++...+.+|++|+.++.|++.+++ |+.++-+ .|+.++...+++.++...++.
T Consensus 143 LE-------------epp~~~ifIlatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 143 LE-------------EPPAHVIFILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred hc-------------CCCCCeEEEEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 44 334567788888899999999875 6666555 889999999988888766543
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=5.4e-11 Score=125.11 Aligned_cols=195 Identities=15% Similarity=0.186 Sum_probs=117.0
Q ss_pred ccccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEecccc
Q 014244 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE 184 (428)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~ 184 (428)
+..|+|++.+.+ +. ...+...++.+...++.. ...++|||++|||||+|++++++++ +..++++++.+
T Consensus 109 l~~~tFdnFv~g----~~--n~~A~~aa~~~a~~~~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 109 INENTFENFVIG----SS--NEQAFIAVQTVSKNPGIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred ccccchhcccCC----Cc--HHHHHHHHHHHHhCcCcc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 335777775543 21 133555666666656542 3469999999999999999999964 46788888887
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC
Q 014244 185 LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (428)
Q Consensus 185 L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~ 264 (428)
+...+...-.... ..+..... +.....+|+|||++.+.++.. . ... |..+++ ..
T Consensus 182 f~~~~~~~l~~~~-~~~~~~~~--~~~~~dvLiIDDiq~l~~k~~--~-----~e~----lf~l~N--------~~---- 235 (450)
T PRK14087 182 FARKAVDILQKTH-KEIEQFKN--EICQNDVLIIDDVQFLSYKEK--T-----NEI----FFTIFN--------NF---- 235 (450)
T ss_pred HHHHHHHHHHHhh-hHHHHHHH--HhccCCEEEEeccccccCCHH--H-----HHH----HHHHHH--------HH----
Confidence 7644332111100 11111100 134567999999998765421 1 122 333333 11
Q ss_pred CCCCceEEEEeCCCC----CCChhhcCCCCce--EEEe--CCCHHHHHHHHHHhccCCC----CCHhHHHHHhcCCChhh
Q 014244 265 ENPRVPIIVTGNDFS----TLYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQS 332 (428)
Q Consensus 265 ~~~~V~VI~TTN~~~----~Ld~ALlR~gRfd--~~i~--~P~~eeR~~Il~~~~~~~~----l~~~~la~lt~gfsgad 332 (428)
...+..+|+|+|.+. .+++.|.. ||. ..+. .|+.++|.+|++..+...+ ++.+.+.-++..++|.-
T Consensus 236 ~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~ 313 (450)
T PRK14087 236 IENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDV 313 (450)
T ss_pred HHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCH
Confidence 112236888888753 35666665 665 2222 9999999999998886543 66666777777776654
Q ss_pred HHhHHHH
Q 014244 333 IDFFGAL 339 (428)
Q Consensus 333 L~~~~al 339 (428)
-...+++
T Consensus 314 R~L~gaL 320 (450)
T PRK14087 314 RKIKGSV 320 (450)
T ss_pred HHHHHHH
Confidence 4444444
No 104
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.27 E-value=6.8e-11 Score=127.08 Aligned_cols=161 Identities=19% Similarity=0.328 Sum_probs=98.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH----hCCceEEEeccccc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLMINDLDA 223 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~----~~~p~ILfIDEiDa 223 (428)
+.+.+||+||||-|||+||+.||+++|..++.+++++=. +...++.....|...-. ..+|.||+|||||-
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 348999999999999999999999999999999999643 34455555555433222 37899999999984
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhc--CCccccCCCc-c--cc---CCCCCceEEEEeCCCCCCChhhcCCCC-ceEE
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIAD--NPTCVQLPGM-Y--NK---EENPRVPIIVTGNDFSTLYAPLIRDGR-MEKF 294 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld--~~~~v~l~~~-~--~~---~~~~~V~VI~TTN~~~~Ld~ALlR~gR-fd~~ 294 (428)
.. .....+++.++. +++.+--.+. . ++ ...-..||||.||+ |+.|-||+-| +-.+
T Consensus 399 a~-------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~A~i 462 (877)
T KOG1969|consen 399 AP-------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPFAEI 462 (877)
T ss_pred Cc-------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccceEE
Confidence 32 111112223332 2221111110 0 00 01124599999998 5566666666 4444
Q ss_pred Ee--CCCHHHHHHHHHHhccCCC--CCHhHHHHHhcCCCh
Q 014244 295 YW--APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (428)
Q Consensus 295 i~--~P~~eeR~~Il~~~~~~~~--l~~~~la~lt~gfsg 330 (428)
++ .|......+-|+.++..++ ++...|..+++-+.+
T Consensus 463 i~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 463 IAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred EEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 44 5555555566776766554 445556666655443
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=8.8e-11 Score=119.93 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=100.6
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc-------cccccCCCCChHHHHHHHHHHHHH
Q 014244 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA-------GELESGNAGEPAKLIRQRYREAAD 206 (428)
Q Consensus 134 ~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~-------s~L~s~~~Ge~~~~Ir~~F~~A~~ 206 (428)
....++.+... +.|..+|||||||+|||++|+++|+.+......... -++ +.........++.+++.+..
T Consensus 26 ~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~i~~l~~~~~~ 102 (367)
T PRK14970 26 TNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL-DAASNNSVDDIRNLIDQVRI 102 (367)
T ss_pred HHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe-ccccCCCHHHHHHHHHHHhh
Confidence 33444444432 467899999999999999999999997652111100 001 11111223556677766521
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhc
Q 014244 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALl 286 (428)
.-....+.|+||||+|.+... .. ..|+..++ .+.....+|++||.+..+.+++.
T Consensus 103 ~p~~~~~kiviIDE~~~l~~~------------~~-~~ll~~le-------------~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 103 PPQTGKYKIYIIDEVHMLSSA------------AF-NAFLKTLE-------------EPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred ccccCCcEEEEEeChhhcCHH------------HH-HHHHHHHh-------------CCCCceEEEEEeCCcccCCHHHH
Confidence 111345679999999865321 11 23434444 22334567778888899999988
Q ss_pred CCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHHHHHhcCCChhhHH
Q 014244 287 RDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSID 334 (428)
Q Consensus 287 R~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~la~lt~gfsgadL~ 334 (428)
++ +..+-. .|+.++...++...+...+ ++.+.+..++.. ++.|+.
T Consensus 157 sr--~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~-~~gdlr 204 (367)
T PRK14970 157 SR--CQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQK-ADGALR 204 (367)
T ss_pred hc--ceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-CCCCHH
Confidence 64 433323 7888998888888777665 455555554443 333443
No 106
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=4.1e-11 Score=129.88 Aligned_cols=169 Identities=12% Similarity=0.182 Sum_probs=107.2
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC----------------
Q 014244 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------- 176 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~---------------- 176 (428)
-+|++++|. ..++...++++... +.|..+|||||+|||||++|+++|+.+++.
T Consensus 13 ~~f~dviGQ---------e~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 13 RSFSEMVGQ---------EHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred CCHHHhcCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 345666664 34455566666543 568899999999999999999999998752
Q ss_pred -------------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHH
Q 014244 177 -------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNA 243 (428)
Q Consensus 177 -------------~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~ 243 (428)
++.+++. .......+|++.+.+.-.-..++-.|+||||+|.+... . .+
T Consensus 82 ~~C~~i~~g~h~D~~eldaa------s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~------------a-~N 142 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAA------SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT------------A-FN 142 (618)
T ss_pred HHHHHHHcCCCCceeecCcc------cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH------------H-HH
Confidence 1111111 01123346666555411111344569999999976332 1 12
Q ss_pred HHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC--HhH
Q 014244 244 TLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDD 320 (428)
Q Consensus 244 ~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~--~~~ 320 (428)
.|+..++ +....+.+|++|+++..+.+.++. |+..+-. .++.++..+.++.++...++. .+.
T Consensus 143 aLLKtLE-------------EPP~~~~fIL~Ttd~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~A 207 (618)
T PRK14951 143 AMLKTLE-------------EPPEYLKFVLATTDPQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQA 207 (618)
T ss_pred HHHHhcc-------------cCCCCeEEEEEECCchhhhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3434444 344667788888999999998776 6766555 778888888888888766554 333
Q ss_pred HHHHhc
Q 014244 321 IVKLVD 326 (428)
Q Consensus 321 la~lt~ 326 (428)
+..++.
T Consensus 208 L~~La~ 213 (618)
T PRK14951 208 LRLLAR 213 (618)
T ss_pred HHHHHH
Confidence 444433
No 107
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=6.2e-11 Score=125.38 Aligned_cols=158 Identities=16% Similarity=0.287 Sum_probs=103.4
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------CeEEecccccccC
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESG 188 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~------------------------~~i~vs~s~L~s~ 188 (428)
+....++.+... +.|..+||+||||+|||++|+.+|+.+++ .++.+++++
T Consensus 21 vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas---- 94 (491)
T PRK14964 21 LVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS---- 94 (491)
T ss_pred HHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc----
Confidence 334444554433 56889999999999999999999997643 233333321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 014244 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (428)
Q Consensus 189 ~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 268 (428)
..+...+|.+.+.+...--.+...|+||||+|.+... . ...|+..++ ++.+.
T Consensus 95 --~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~------------A-~NaLLK~LE-------------ePp~~ 146 (491)
T PRK14964 95 --NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS------------A-FNALLKTLE-------------EPAPH 146 (491)
T ss_pred --CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH------------H-HHHHHHHHh-------------CCCCC
Confidence 1124557776666521111456779999999766321 1 124445555 34466
Q ss_pred ceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCC--CHhHHHHHhc
Q 014244 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV--ADDDIVKLVD 326 (428)
Q Consensus 269 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l--~~~~la~lt~ 326 (428)
+.+|++|+.++.|++.++. |+..+-. .++.++..+.++.++...++ +.+.+..++.
T Consensus 147 v~fIlatte~~Kl~~tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~ 205 (491)
T PRK14964 147 VKFILATTEVKKIPVTIIS--RCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAE 205 (491)
T ss_pred eEEEEEeCChHHHHHHHHH--hheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 7888888999999999886 6666555 78888999998888876654 4444443333
No 108
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=7e-11 Score=126.54 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=91.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccCCCCChHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~~~Ir~~F~ 202 (428)
+.|..+|||||||||||++|+++|+.+.+. ++.+++. ... ....++.+..
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa----s~~--gvd~ir~ii~ 109 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA----SRT--GVEETKEILD 109 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc----ccc--CHHHHHHHHH
Confidence 567889999999999999999999987652 1112111 111 1234556655
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014244 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
.+...-..+...|+||||+|.+... ....|+..++ ++...+.+|++|+++..+.
T Consensus 110 ~~~~~p~~g~~kViIIDEa~~ls~~-------------a~naLLK~LE-------------epp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 110 NIQYMPSQGRYKVYLIDEVHMLSKQ-------------SFNALLKTLE-------------EPPEYVKFILATTDYHKIP 163 (546)
T ss_pred HHHhhhhcCCcEEEEEechhhccHH-------------HHHHHHHHHh-------------cCCCCceEEEEECChhhhh
Confidence 5522223556789999999875321 1234555555 3345677888888899999
Q ss_pred hhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 283 ~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
++++. |+..+-. .++.++....++..+...++.
T Consensus 164 ~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~ 197 (546)
T PRK14957 164 VTILS--RCIQLHLKHISQADIKDQLKIILAKENIN 197 (546)
T ss_pred hhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 88765 6655555 888888888888877665543
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.26 E-value=2.9e-11 Score=115.60 Aligned_cols=181 Identities=20% Similarity=0.276 Sum_probs=102.9
Q ss_pred ccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCeEEecccccc
Q 014244 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELE 186 (428)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~ 186 (428)
.|+|+|.+.+ .. .+.+.+.+++....++.. ...++||||+|+|||+|.+||+++. +..++++++.++.
T Consensus 4 ~~tFdnfv~g-----~~-N~~a~~~~~~ia~~~~~~-~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~ 76 (219)
T PF00308_consen 4 KYTFDNFVVG-----ES-NELAYAAAKAIAENPGER-YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI 76 (219)
T ss_dssp T-SCCCS--T-----TT-THHHHHHHHHHHHSTTTS-SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH
T ss_pred CCccccCCcC-----Cc-HHHHHHHHHHHHhcCCCC-CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH
Confidence 5777885433 11 255666777766666542 2348999999999999999999984 5678888887765
Q ss_pred cCCCCChHH-HHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 014244 187 SGNAGEPAK-LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (428)
Q Consensus 187 s~~~Ge~~~-~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 265 (428)
..+...-.. .+ ..|.. .-....+|+|||++.+.++. ..+..|+.+++ .. .
T Consensus 77 ~~~~~~~~~~~~-~~~~~-----~~~~~DlL~iDDi~~l~~~~-----------~~q~~lf~l~n--------~~----~ 127 (219)
T PF00308_consen 77 REFADALRDGEI-EEFKD-----RLRSADLLIIDDIQFLAGKQ-----------RTQEELFHLFN--------RL----I 127 (219)
T ss_dssp HHHHHHHHTTSH-HHHHH-----HHCTSSEEEEETGGGGTTHH-----------HHHHHHHHHHH--------HH----H
T ss_pred HHHHHHHHcccc-hhhhh-----hhhcCCEEEEecchhhcCch-----------HHHHHHHHHHH--------HH----H
Confidence 322110000 00 01111 13456799999999876542 12334444444 11 1
Q ss_pred CCCceEEEEeCC-CCC---CChhhcCCCCceE--EEe--CCCHHHHHHHHHHhccCCC--CCHhHHHHHhcCCCh
Q 014244 266 NPRVPIIVTGND-FST---LYAPLIRDGRMEK--FYW--APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (428)
Q Consensus 266 ~~~V~VI~TTN~-~~~---Ld~ALlR~gRfd~--~i~--~P~~eeR~~Il~~~~~~~~--l~~~~la~lt~gfsg 330 (428)
..+.++|+|++. |.. +++.|.. ||.- .+. .|+.++|.+|++......+ ++.+.+.-++..++.
T Consensus 128 ~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 128 ESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp HTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS
T ss_pred hhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC
Confidence 133467888854 444 4555554 5442 333 9999999999998876654 445555555555544
No 110
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.25 E-value=1e-10 Score=112.73 Aligned_cols=158 Identities=13% Similarity=0.180 Sum_probs=91.4
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---CCeEEecccccccCCCCChHHHHHHHHHHHHHHHH
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 209 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~ 209 (428)
+....+.+.... .+..++||||||||||+|++++|+++. ..+.+++...... ...+..+. +.
T Consensus 32 a~~~l~~~~~~~---~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~----~~ 96 (235)
T PRK08084 32 LLAALQNALRQE---HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEG----ME 96 (235)
T ss_pred HHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHH----hh
Confidence 444555544332 234799999999999999999999854 3455555543221 01111111 12
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CCC---CChhh
Q 014244 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYAPL 285 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-~~~---Ld~AL 285 (428)
. ..+|+|||++.+.++.. ..+.+..++..+.+ ..++.+|+||+. |.. +.|.|
T Consensus 97 ~--~dlliiDdi~~~~~~~~-------~~~~lf~l~n~~~e---------------~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 97 Q--LSLVCIDNIECIAGDEL-------WEMAIFDLYNRILE---------------SGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred h--CCEEEEeChhhhcCCHH-------HHHHHHHHHHHHHH---------------cCCCeEEEeCCCChHHcCcccHHH
Confidence 2 35899999998754421 11222222211111 233456666654 444 57888
Q ss_pred cCCCCce--EEEe--CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCCChh
Q 014244 286 IRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 331 (428)
Q Consensus 286 lR~gRfd--~~i~--~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfsga 331 (428)
.. |+. ..+. .|+.++|.+|++...... .++.+.+.-++..+.+.
T Consensus 153 ~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 153 AS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE 202 (235)
T ss_pred HH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Confidence 76 763 3333 889999999998866544 45566666666666554
No 111
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.25 E-value=7.1e-11 Score=111.69 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHHHH
Q 014244 131 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADI 207 (428)
Q Consensus 131 ~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~ 207 (428)
+......+.++. ...+..++|+||||||||++|+++++++ +.+++++++.++.+.. ...+..
T Consensus 23 ~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~---- 87 (226)
T TIGR03420 23 AELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEG---- 87 (226)
T ss_pred HHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhh----
Confidence 334444555543 2456789999999999999999999986 4678888887665221 122221
Q ss_pred HHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CCCCC---h
Q 014244 208 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTLY---A 283 (428)
Q Consensus 208 i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-~~~Ld---~ 283 (428)
...+.+|+|||+|.+..... ....|..+++ .. .. .+..+|+|||. +..++ +
T Consensus 88 --~~~~~lLvIDdi~~l~~~~~-----------~~~~L~~~l~--------~~---~~-~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 88 --LEQADLVCLDDVEAIAGQPE-----------WQEALFHLYN--------RV---RE-AGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred --cccCCEEEEeChhhhcCChH-----------HHHHHHHHHH--------HH---HH-cCCeEEEECCCChHHCCcccH
Confidence 12346999999997644311 0112323333 11 01 12257777764 33332 5
Q ss_pred hhcCCCCceEEEe--CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCCChhhHH
Q 014244 284 PLIRDGRMEKFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID 334 (428)
Q Consensus 284 ALlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfsgadL~ 334 (428)
.|.++..+...+. .|+.+++..+++.+.... .++.+.+..+...++|.--+
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~ 197 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGS 197 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 6665322235555 778899999998776543 45677777777766654433
No 112
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.25 E-value=6.6e-11 Score=119.46 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=94.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccCCCCChHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~~~Ir~~F~ 202 (428)
+.|..+|||||||+|||++|+++|+.+... ++.+++. .......++.++.
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~ 107 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAA------SNNGVDDIREILD 107 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHHH
Confidence 467889999999999999999999997532 2222221 0123345667776
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014244 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
.+...-..+...|++|||+|.+... ..+ .|+..++ .....+.+|++||+++.+.
T Consensus 108 ~~~~~p~~~~~~vviidea~~l~~~------------~~~-~Ll~~le-------------~~~~~~~lIl~~~~~~~l~ 161 (355)
T TIGR02397 108 NVKYAPSSGKYKVYIIDEVHMLSKS------------AFN-ALLKTLE-------------EPPEHVVFILATTEPHKIP 161 (355)
T ss_pred HHhcCcccCCceEEEEeChhhcCHH------------HHH-HHHHHHh-------------CCccceeEEEEeCCHHHHH
Confidence 6521111345569999999876321 112 2334444 2335677888899999999
Q ss_pred hhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHHHHHh
Q 014244 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLV 325 (428)
Q Consensus 283 ~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~la~lt 325 (428)
+++.+ |+..+-. .|+.++..++++.++...+ ++.+.+..++
T Consensus 162 ~~l~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~ 205 (355)
T TIGR02397 162 ATILS--RCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIA 205 (355)
T ss_pred HHHHh--heeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 98876 6655444 8889999999988887655 4544444333
No 113
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.24 E-value=7.7e-11 Score=100.91 Aligned_cols=128 Identities=20% Similarity=0.232 Sum_probs=77.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
....++|+||||||||++++.+++.+ +.+++.++..+.............. .+...........+++|+|||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-hHhHHHHhhccCCCeEEEEeChhhh
Confidence 45689999999999999999999998 8888888887665433221111000 0011111113567899999999876
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--CCChhhcCCCCceEEEeCC
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYWAP 298 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~--~Ld~ALlR~gRfd~~i~~P 298 (428)
... ....++.++. ..... .....++.+|++||... .+++.+.. ||+..+.+|
T Consensus 97 ~~~-------------~~~~~~~~i~-----~~~~~--~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 97 SRG-------------AQNALLRVLE-----TLNDL--RIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hHH-------------HHHHHHHHHH-----hcCce--eccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 111 0112222222 00000 01246789999999888 67777764 887666533
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=7.3e-11 Score=127.53 Aligned_cols=154 Identities=10% Similarity=0.140 Sum_probs=97.3
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccC
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESG 188 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~ 188 (428)
+....++++... +.+..+||+||||||||++|+++|+.+.+. ++.+++..
T Consensus 24 v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~---- 97 (624)
T PRK14959 24 VKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS---- 97 (624)
T ss_pred HHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc----
Confidence 344455555433 456799999999999999999999998753 22222110
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 014244 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (428)
Q Consensus 189 ~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 268 (428)
. .....+|.+-+.....-..+...||||||+|.+... ....|+..++ +...+
T Consensus 98 ~--~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~-------------a~naLLk~LE-------------EP~~~ 149 (624)
T PRK14959 98 N--RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE-------------AFNALLKTLE-------------EPPAR 149 (624)
T ss_pred c--cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH-------------HHHHHHHHhh-------------ccCCC
Confidence 0 112234443322211112456689999999876321 1233444554 33456
Q ss_pred ceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHHH
Q 014244 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIV 322 (428)
Q Consensus 269 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~la 322 (428)
+.+|++||.+..+.+.+++ |+..+-. .++.++...+++.++...+ ++.+.+.
T Consensus 150 ~ifILaTt~~~kll~TI~S--Rcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~ 204 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIVS--RCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVR 204 (624)
T ss_pred EEEEEecCChhhhhHHHHh--hhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7899999999999988876 6655444 7888998888888777655 4544433
No 115
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=5e-11 Score=128.95 Aligned_cols=160 Identities=11% Similarity=0.192 Sum_probs=103.6
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC----------------
Q 014244 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------- 176 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~---------------- 176 (428)
-+|++++|. ..+....++++... +.|..+|||||||||||++|+++|+.+.+.
T Consensus 13 ~~f~~iiGq---------~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 13 QTFSDLTGQ---------EHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred CCHHHccCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 344666665 33344445555432 578899999999999999999999997652
Q ss_pred --------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHh
Q 014244 177 --------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 248 (428)
Q Consensus 177 --------~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~l 248 (428)
++.+.+. .......+|++...+.-.-......|+||||+|.+... -...|+..
T Consensus 82 i~~g~~~d~~eid~~------s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~naLLk~ 142 (576)
T PRK14965 82 ITEGRSVDVFEIDGA------SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AFNALLKT 142 (576)
T ss_pred HhcCCCCCeeeeecc------CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HHHHHHHH
Confidence 1222111 01223456666655511111345579999999865321 12345555
Q ss_pred hcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 249 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 249 ld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
|+ ++...+.+|++||.++.|.++++. |+..+-+ .++.++....+..++...++.
T Consensus 143 LE-------------epp~~~~fIl~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 143 LE-------------EPPPHVKFIFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred HH-------------cCCCCeEEEEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 55 445678899999999999999875 5555445 778888888888777666544
No 116
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.23 E-value=8.1e-11 Score=112.10 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=92.4
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 209 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~ 209 (428)
.....+++.. +...+..++|+||||||||+||+++++++ +.+++.+++..+.. .+. .
T Consensus 28 ~~~~l~~~~~--~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------------~~~------~ 87 (227)
T PRK08903 28 LVARLRELAA--GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------------AFD------F 87 (227)
T ss_pred HHHHHHHHHh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------------HHh------h
Confidence 3344555543 33456789999999999999999999985 66777777765431 111 1
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC---CCChhhc
Q 014244 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLI 286 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~---~Ld~ALl 286 (428)
.....+|+|||+|.+... . ...|..+++ .. .......+|+|++.+. .+.+.|.
T Consensus 88 ~~~~~~liiDdi~~l~~~----~---------~~~L~~~~~--------~~---~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 88 DPEAELYAVDDVERLDDA----Q---------QIALFNLFN--------RV---RAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred cccCCEEEEeChhhcCch----H---------HHHHHHHHH--------HH---HHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 234679999999875321 1 122333333 11 1122333555555432 2445555
Q ss_pred CCCCc--eEEEe--CCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCCChhhHH
Q 014244 287 RDGRM--EKFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID 334 (428)
Q Consensus 287 R~gRf--d~~i~--~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfsgadL~ 334 (428)
. || ...+. .|+.+++..++..+.... .++.+.+..+...++|.-.+
T Consensus 144 s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~ 195 (227)
T PRK08903 144 T--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPS 195 (227)
T ss_pred H--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 3 44 23444 788888888888776554 45566677777765554433
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=2.6e-10 Score=123.09 Aligned_cols=159 Identities=9% Similarity=0.119 Sum_probs=103.1
Q ss_pred ccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------
Q 014244 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (428)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~----------------- 176 (428)
+|+.++|. ..+....++++... +.|..+||+||+|||||++|+++|+.+.+.
T Consensus 11 ~f~eivGq---------~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 11 TFAEVVGQ---------EHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred cHHHhcCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 44566664 34444456666533 578889999999999999999999997642
Q ss_pred ---------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHH
Q 014244 177 ---------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 247 (428)
Q Consensus 177 ---------~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~ 247 (428)
++.++++. ..+...+|++-+.+...-..+...|+||||++.+... ....|+.
T Consensus 80 ~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A~NALLK 140 (584)
T PRK14952 80 APNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------------GFNALLK 140 (584)
T ss_pred hcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------HHHHHHH
Confidence 11121110 0123445555444411112456679999999876321 1234445
Q ss_pred hhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 248 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 248 lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
.+. +....+.+|++|+.++.|.++++. |+.++-+ .++.++..+.+..++...++.
T Consensus 141 ~LE-------------Epp~~~~fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 141 IVE-------------EPPEHLIFIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred HHh-------------cCCCCeEEEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 555 445677888888999999999876 5655555 788888888888887766543
No 118
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.22 E-value=1e-10 Score=108.35 Aligned_cols=139 Identities=10% Similarity=0.093 Sum_probs=89.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccCCCCChHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~~~Ir~~F~ 202 (428)
+.|..+|||||||+|||++|+++++.+... +..+... ... -+...++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHH
Confidence 567899999999999999999999996432 1111111 001 12345555555
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014244 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
.+...-..+...|+||||+|.+... . ...|+..++ .+.....+|++||.+..|+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~------------~-~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA------------A-ANALLKTLE-------------EPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEECChHhCh
Confidence 5522112456789999999876332 1 123444444 2334567888888889999
Q ss_pred hhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHhHHH
Q 014244 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDDIV 322 (428)
Q Consensus 283 ~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~~la 322 (428)
+++.+ |+..+.. .|+.++..+++... +++.+.+.
T Consensus 141 ~~i~s--r~~~~~~~~~~~~~~~~~l~~~----gi~~~~~~ 175 (188)
T TIGR00678 141 PTIRS--RCQVLPFPPLSEEALLQWLIRQ----GISEEAAE 175 (188)
T ss_pred HHHHh--hcEEeeCCCCCHHHHHHHHHHc----CCCHHHHH
Confidence 99987 5544333 88999999988776 35554433
No 119
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.22 E-value=4.2e-11 Score=120.44 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=95.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccC--CCCChHHHH----------HHHHHHHHHHHHhCCceEE
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAKLI----------RQRYREAADIIKKGKMCCL 216 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~--~~Ge~~~~I----------r~~F~~A~~~i~~~~p~IL 216 (428)
.+.|||.||||||||++++.+|+.++++++.+++..-.+. .+|...-.+ ...+-.| ...+++|
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g~il 138 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHNVAL 138 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCCeEE
Confidence 5679999999999999999999999999999887665544 455421111 1223333 3467899
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc-cCCCCCceEEEEeCCCC------------CCCh
Q 014244 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGNDFS------------TLYA 283 (428)
Q Consensus 217 fIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~-~~~~~~V~VI~TTN~~~------------~Ld~ 283 (428)
++||+|...++ +...|..+|+..-.+.+++... ....+...+|+|+|..+ .+++
T Consensus 139 llDEin~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 139 CFDEYDAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred EechhhccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 99999975222 2244555566432333333211 12335677999999865 4578
Q ss_pred hhcCCCCceEEEe--CCCHHHHHHHHHHhc
Q 014244 284 PLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (428)
Q Consensus 284 ALlR~gRfd~~i~--~P~~eeR~~Il~~~~ 311 (428)
|++- ||-..+. .|+.++-.+|+....
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 8885 8876654 899999899987664
No 120
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.22 E-value=1e-10 Score=129.07 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=94.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEecccccccCCC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRM 228 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~-~~~p~ILfIDEiDa~~~~r 228 (428)
..++||||||||||++|+++|+.++.+|+.+++... ..+.++..+..+...+. .....||||||+|.+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~- 124 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA- 124 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-
Confidence 368999999999999999999999999888876521 12334555555533333 345779999999875321
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhcCCCCceEEEe-CCCHHHHHH
Q 014244 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIG 305 (428)
Q Consensus 229 ~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT--N~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~ 305 (428)
.+..|+..++ ...+.+|++| |....++++++++ +..+.. .++.+++..
T Consensus 125 ------------qQdaLL~~lE---------------~g~IiLI~aTTenp~~~l~~aL~SR--~~v~~l~pLs~edi~~ 175 (725)
T PRK13341 125 ------------QQDALLPWVE---------------NGTITLIGATTENPYFEVNKALVSR--SRLFRLKSLSDEDLHQ 175 (725)
T ss_pred ------------HHHHHHHHhc---------------CceEEEEEecCCChHhhhhhHhhcc--ccceecCCCCHHHHHH
Confidence 1223333333 2345666655 3445789999874 433333 888999999
Q ss_pred HHHHhcc-------CC--CCCHhHHHHHhcCCCh
Q 014244 306 VCKGIFR-------ND--NVADDDIVKLVDTFPG 330 (428)
Q Consensus 306 Il~~~~~-------~~--~l~~~~la~lt~gfsg 330 (428)
|++.++. .. .++.+.+..++...+|
T Consensus 176 IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G 209 (725)
T PRK13341 176 LLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG 209 (725)
T ss_pred HHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC
Confidence 9888775 22 4556666666655544
No 121
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=7.6e-11 Score=126.88 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=93.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccCCCCChHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~~~Ir~~F~ 202 (428)
+.|.++||+||||||||++|+++|+.+.+. ++.++++. ......+|.+..
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~ 109 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIID 109 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHH
Confidence 567899999999999999999999997541 11122110 112334666665
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014244 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
.+...--.+...|++|||+|.+... ....|+..++ ++...+.+|++|+.+..|.
T Consensus 110 ~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKtLE-------------EPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 110 NINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKTLE-------------EPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred HHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHHHH-------------hCCCcEEEEEECCChHhhh
Confidence 5521111345569999999876321 1234555555 3445678888889999999
Q ss_pred hhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHHH
Q 014244 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIV 322 (428)
Q Consensus 283 ~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~la 322 (428)
+++++ |+..+-. .|+.++....++..+...+ ++.+.+.
T Consensus 164 ~TI~S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~ 204 (605)
T PRK05896 164 LTIIS--RCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAID 204 (605)
T ss_pred HHHHh--hhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99887 6655544 8889998888888776654 5545433
No 122
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=6.5e-11 Score=126.78 Aligned_cols=154 Identities=13% Similarity=0.205 Sum_probs=96.1
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe--ccc--------------ccc--cCCCCChHH
Q 014244 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM--SAG--------------ELE--SGNAGEPAK 195 (428)
Q Consensus 134 ~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v--s~s--------------~L~--s~~~Ge~~~ 195 (428)
....++.+.. .+.+..+||+||||||||++|+++|+.+++..-.. .++ ++. +.-......
T Consensus 25 ~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd 102 (527)
T PRK14969 25 VRALTNALEQ--QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVD 102 (527)
T ss_pred HHHHHHHHHc--CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHH
Confidence 3344454443 35688999999999999999999999987631100 000 000 000011234
Q ss_pred HHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe
Q 014244 196 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG 275 (428)
Q Consensus 196 ~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT 275 (428)
.+|++...+...-..++..|+||||+|.+... .. ..|+..++ ++...+.+|++|
T Consensus 103 ~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~------------a~-naLLK~LE-------------epp~~~~fIL~t 156 (527)
T PRK14969 103 AMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS------------AF-NAMLKTLE-------------EPPEHVKFILAT 156 (527)
T ss_pred HHHHHHHHHhhCcccCCceEEEEcCcccCCHH------------HH-HHHHHHHh-------------CCCCCEEEEEEe
Confidence 56666665511111455679999999876321 11 23444444 344677888899
Q ss_pred CCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 276 NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 276 N~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
++++.+.+.++. |+..+-. .|+.++..+.+..++...++.
T Consensus 157 ~d~~kil~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 157 TDPQKIPVTVLS--RCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CChhhCchhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 999999988765 6655555 888888888888877665553
No 123
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.2e-11 Score=117.93 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=80.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc-ccCCCCChHHHHH-HHHHHHHHHHHhCCceEEEecccccccCC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL-ESGNAGEPAKLIR-QRYREAADIIKKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L-~s~~~Ge~~~~Ir-~~F~~A~~~i~~~~p~ILfIDEiDa~~~~ 227 (428)
..+||.||.|||||+||+.+|+.++++|..-.+..| +.+|+|+...+|- .+...|.--+.+....||+|||||+++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 479999999999999999999999999999999888 5689999866543 34443321223556789999999999887
Q ss_pred CCCCc-ccchhhHHHHHHHHHhhcCC
Q 014244 228 MGGTT-QYTVNNQMVNATLMNIADNP 252 (428)
Q Consensus 228 r~~~~-~~~~~~~~v~~~L~~lld~~ 252 (428)
....+ ...+...-++|.|+.++...
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCc
Confidence 64222 24566788999999999854
No 124
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.21 E-value=1.2e-10 Score=98.54 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=78.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCC---eEEecccccccC--------------CCCChHHHHHHHHHHHHHHHHhC
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG--------------NAGEPAKLIRQRYREAADIIKKG 211 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~---~i~vs~s~L~s~--------------~~Ge~~~~Ir~~F~~A~~~i~~~ 211 (428)
+..++|+||||||||++++.+|..+... ++.++.+..... ........++..+..+ +..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA----RKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----Hhc
Confidence 4679999999999999999999998875 777777654332 2233445555666666 666
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCc
Q 014244 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 291 (428)
.+.||||||++.+..... . ....... . ...........+..+|+++|......+..+++ |+
T Consensus 78 ~~~viiiDei~~~~~~~~---~-----~~~~~~~----~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~ 138 (148)
T smart00382 78 KPDVLILDEITSLLDAEQ---E-----ALLLLLE----E------LRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RF 138 (148)
T ss_pred CCCEEEEECCcccCCHHH---H-----HHHHhhh----h------hHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-cc
Confidence 689999999988765432 0 0000000 0 00000112345678999999744444444544 77
Q ss_pred eEEEe
Q 014244 292 EKFYW 296 (428)
Q Consensus 292 d~~i~ 296 (428)
+..+.
T Consensus 139 ~~~~~ 143 (148)
T smart00382 139 DRRIV 143 (148)
T ss_pred ceEEE
Confidence 77665
No 125
>PRK08116 hypothetical protein; Validated
Probab=99.20 E-value=7.6e-11 Score=116.08 Aligned_cols=135 Identities=21% Similarity=0.336 Sum_probs=79.7
Q ss_pred cccccccccccCcCCCCCchhhHHHHHHHHHHHhhhCC--CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEec
Q 014244 107 SQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP--NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (428)
Q Consensus 107 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~--g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs 181 (428)
+..++.++|+|...+ +. ...+...+++|+... ....+.|++|||+||||||+||.+||+++ +.+++.++
T Consensus 76 ~~~~~~~tFdnf~~~----~~--~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 76 DEKFRNSTFENFLFD----KG--SEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred CHHHHhcchhcccCC----hH--HHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 345555666664322 11 133444555555421 11335689999999999999999999985 78888888
Q ss_pred ccccccCCCCChHHHHHHHHHH-----HHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccc
Q 014244 182 AGELESGNAGEPAKLIRQRYRE-----AADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 255 (428)
Q Consensus 182 ~s~L~s~~~Ge~~~~Ir~~F~~-----A~~~i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v 255 (428)
.+++.+.+ ...|.. ..+.+. .....+|+|||+..... +......|++++|
T Consensus 150 ~~~ll~~i--------~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~-----------t~~~~~~l~~iin----- 205 (268)
T PRK08116 150 FPQLLNRI--------KSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD-----------TEWAREKVYNIID----- 205 (268)
T ss_pred HHHHHHHH--------HHHHhccccccHHHHHHHhcCCCEEEEecccCCCC-----------CHHHHHHHHHHHH-----
Confidence 87765322 111210 001122 23456999999954211 1222345666666
Q ss_pred cCCCccccCCCCCceEEEEeCCC
Q 014244 256 QLPGMYNKEENPRVPIIVTGNDF 278 (428)
Q Consensus 256 ~l~~~~~~~~~~~V~VI~TTN~~ 278 (428)
. ....+.++|+|||.+
T Consensus 206 ---~----r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 206 ---S----RYRKGLPTIVTTNLS 221 (268)
T ss_pred ---H----HHHCCCCEEEECCCC
Confidence 1 123456899999975
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.20 E-value=3.7e-10 Score=127.08 Aligned_cols=142 Identities=14% Similarity=0.176 Sum_probs=89.5
Q ss_pred CCCcE-EEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC------------CCCChHHHHHHHHHHHHHHHHh
Q 014244 147 KVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKK 210 (428)
Q Consensus 147 ~~p~g-lLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~------------~~Ge~~~~Ir~~F~~A~~~i~~ 210 (428)
..|.| +||+||||||||.+|+++|..+ ...++.++.+++... |+|..+. ..+.+ .++.
T Consensus 593 ~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~---g~L~~---~v~~ 666 (852)
T TIGR03345 593 RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG---GVLTE---AVRR 666 (852)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc---chHHH---HHHh
Confidence 34666 7999999999999999999998 446777777665322 4432211 11212 2356
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----------
Q 014244 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----------- 279 (428)
Q Consensus 211 ~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~----------- 279 (428)
...+||+|||||+.. ..+...|++++|+-... ++........+.+||+|||...
T Consensus 667 ~p~svvllDEieka~-------------~~v~~~Llq~ld~g~l~--d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~ 731 (852)
T TIGR03345 667 KPYSVVLLDEVEKAH-------------PDVLELFYQVFDKGVME--DGEGREIDFKNTVILLTSNAGSDLIMALCADPE 731 (852)
T ss_pred CCCcEEEEechhhcC-------------HHHHHHHHHHhhcceee--cCCCcEEeccccEEEEeCCCchHHHHHhccCcc
Confidence 788999999998643 23445677888733211 1111223447889999999532
Q ss_pred ------------------CCChhhcCCCCceEEEe-CCCHHHHHHHHHHhc
Q 014244 280 ------------------TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIF 311 (428)
Q Consensus 280 ------------------~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~ 311 (428)
.+.|+|+. |++.+.+ ..+.++..+|+...+
T Consensus 732 ~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~iI~F~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 732 TAPDPEALLEALRPELLKVFKPAFLG--RMTVIPYLPLDDDVLAAIVRLKL 780 (852)
T ss_pred cCcchHHHHHHHHHHHHHhccHHHhc--ceeEEEeCCCCHHHHHHHHHHHH
Confidence 14455553 6764444 667777777766554
No 127
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=1.5e-10 Score=126.81 Aligned_cols=143 Identities=12% Similarity=0.219 Sum_probs=94.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe---cc----------cccc--cCCCCChHHHHHHHHHHHHHHHHhC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SA----------GELE--SGNAGEPAKLIRQRYREAADIIKKG 211 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v---s~----------s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~~~ 211 (428)
+.+..+|||||||||||++|+++|+.+.+.--.. .+ .++. +.....+...+|.+.+.+...-..+
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g 117 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS 117 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC
Confidence 5688999999999999999999999976531100 00 0110 0000012445777766652222246
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCc
Q 014244 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 291 (428)
...|+||||+|.+... ....|+..++ ++...+.+|++|+.++.|++++++ |+
T Consensus 118 ~~KV~IIDEa~~LT~~-------------A~NALLKtLE-------------EPP~~tifILaTte~~KLl~TI~S--Rc 169 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS-------------AFNALLKTLE-------------EPPKHVIFILATTEVHKIPLTILS--RV 169 (725)
T ss_pred CCEEEEEEChhhCCHH-------------HHHHHHHHhh-------------cCCCceEEEEEcCChhhhhHHHHh--hc
Confidence 6789999999876321 1234545555 445667888888999999999886 66
Q ss_pred eEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 292 EKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 292 d~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
.++-. .|+.++...+++..+...++.
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 65555 888999988888877665554
No 128
>PRK12377 putative replication protein; Provisional
Probab=99.18 E-value=1.6e-10 Score=112.53 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=72.3
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHH---HH
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA---AD 206 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A---~~ 206 (428)
+...++.|..... ....+++|+||||||||+||.|||+++ |..++.++..++... ++..|... .+
T Consensus 86 a~~~a~~~a~~~~-~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~--------l~~~~~~~~~~~~ 156 (248)
T PRK12377 86 ALSQAKSIADELM-TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR--------LHESYDNGQSGEK 156 (248)
T ss_pred HHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH--------HHHHHhccchHHH
Confidence 4445555544221 124689999999999999999999996 677788887776632 22222111 01
Q ss_pred HHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 014244 207 IIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (428)
Q Consensus 207 ~i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 278 (428)
.++ -....||+|||++..... ......|+++++ . ....+.|+|+|||..
T Consensus 157 ~l~~l~~~dLLiIDDlg~~~~s-----------~~~~~~l~~ii~---------~---R~~~~~ptiitSNl~ 206 (248)
T PRK12377 157 FLQELCKVDLLVLDEIGIQRET-----------KNEQVVLNQIID---------R---RTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHhcCCCEEEEcCCCCCCCC-----------HHHHHHHHHHHH---------H---HHhcCCCEEEEcCCC
Confidence 222 456789999999764322 112345666666 1 233567999999975
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=3.6e-10 Score=118.97 Aligned_cols=167 Identities=13% Similarity=0.176 Sum_probs=102.7
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC----------------
Q 014244 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------- 176 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~---------------- 176 (428)
-+|+.++|. ..+....++.+.. -+.|..+|||||||+|||++|+++|+.+...
T Consensus 14 ~~~~diiGq---------~~~v~~L~~~i~~--~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 14 QTFSEILGQ---------DAVVAVLKNALRF--NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred CCHHHhcCc---------HHHHHHHHHHHHc--CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 345666664 2223334444432 2568899999999999999999999997542
Q ss_pred ---------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHH
Q 014244 177 ---------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 247 (428)
Q Consensus 177 ---------~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~ 247 (428)
++.+.+. ... +...++.+-+...-.-......|+||||+|.+... ....|+.
T Consensus 83 ~i~~~~~~d~~~i~g~----~~~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk 143 (451)
T PRK06305 83 EISSGTSLDVLEIDGA----SHR--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLK 143 (451)
T ss_pred HHhcCCCCceEEeecc----ccC--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHH
Confidence 1112111 011 12334443332211112467789999999876321 1234555
Q ss_pred hhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHHHHH
Q 014244 248 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKL 324 (428)
Q Consensus 248 lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~la~l 324 (428)
.++ ++...+.+|++||.+..|.+++.. |+..+.. .|+.++...++...+...+ ++.+.+..+
T Consensus 144 ~lE-------------ep~~~~~~Il~t~~~~kl~~tI~s--Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L 208 (451)
T PRK06305 144 TLE-------------EPPQHVKFFLATTEIHKIPGTILS--RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPI 208 (451)
T ss_pred Hhh-------------cCCCCceEEEEeCChHhcchHHHH--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 555 334567888888999999999886 6665555 8889998888888776655 444443333
No 130
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.18 E-value=2.2e-10 Score=115.19 Aligned_cols=133 Identities=19% Similarity=0.266 Sum_probs=89.9
Q ss_pred HHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC---eEEecccccccCCCCChHHHHHHHHHHHHHHHH-hCC
Q 014244 137 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGK 212 (428)
Q Consensus 137 ~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~---~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~-~~~ 212 (428)
.++++....+ | .++||||||||||+||+.|++...-+ |+.+++..- ..+-+|++|+.+..... ..+
T Consensus 153 lrs~ieq~~i--p-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-------~t~dvR~ife~aq~~~~l~kr 222 (554)
T KOG2028|consen 153 LRSLIEQNRI--P-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-------KTNDVRDIFEQAQNEKSLTKR 222 (554)
T ss_pred HHHHHHcCCC--C-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-------chHHHHHHHHHHHHHHhhhcc
Confidence 4555544333 3 68899999999999999999987665 777776532 24668999999854443 567
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhcCCCC
Q 014244 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGR 290 (428)
Q Consensus 213 p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT--N~~~~Ld~ALlR~gR 290 (428)
..|||||||..+-. +| +.++ .-..+...|.+|++| |---.|..||+. |
T Consensus 223 kTilFiDEiHRFNk-----sQ--------QD~f---------------LP~VE~G~I~lIGATTENPSFqln~aLlS--R 272 (554)
T KOG2028|consen 223 KTILFIDEIHRFNK-----SQ--------QDTF---------------LPHVENGDITLIGATTENPSFQLNAALLS--R 272 (554)
T ss_pred eeEEEeHHhhhhhh-----hh--------hhcc---------------cceeccCceEEEecccCCCccchhHHHHh--c
Confidence 88999999965322 11 1111 111445667788765 555688999997 5
Q ss_pred ceEEEe-CCCHHHHHHHHHH
Q 014244 291 MEKFYW-APTREDRIGVCKG 309 (428)
Q Consensus 291 fd~~i~-~P~~eeR~~Il~~ 309 (428)
+-.++. ..+.++..-||..
T Consensus 273 C~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred cceeEeccCCHHHHHHHHHH
Confidence 556666 5566666666654
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=3.9e-10 Score=119.67 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=96.4
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-eEE------------ecc---cccc--cCCCCChHHH
Q 014244 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PIM------------MSA---GELE--SGNAGEPAKL 196 (428)
Q Consensus 135 ~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~-~i~------------vs~---s~L~--s~~~Ge~~~~ 196 (428)
...++.+.. .+.+..+|||||||+|||++|+++|+.+++. ... +.. .++. +.-.......
T Consensus 26 ~~L~~~i~~--~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ 103 (486)
T PRK14953 26 RILKNAVKL--QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDD 103 (486)
T ss_pred HHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHH
Confidence 334444433 3567789999999999999999999997641 000 000 0110 0000112334
Q ss_pred HHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 014244 197 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (428)
Q Consensus 197 Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN 276 (428)
+|.+.+.+...-..+...|+||||+|.+... .. ..|+..++ ++...+.+|++|+
T Consensus 104 ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~------------a~-naLLk~LE-------------epp~~~v~Il~tt 157 (486)
T PRK14953 104 IRALRDAVSYTPIKGKYKVYIIDEAHMLTKE------------AF-NALLKTLE-------------EPPPRTIFILCTT 157 (486)
T ss_pred HHHHHHHHHhCcccCCeeEEEEEChhhcCHH------------HH-HHHHHHHh-------------cCCCCeEEEEEEC
Confidence 5555444411112456789999999866321 11 23444444 3344567777788
Q ss_pred CCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCH--hHHHHHh
Q 014244 277 DFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVAD--DDIVKLV 325 (428)
Q Consensus 277 ~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~--~~la~lt 325 (428)
.++.+++++.+ |+.++.. .|+.++...+++.++...++.. +.+..++
T Consensus 158 ~~~kl~~tI~S--Rc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 158 EYDKIPPTILS--RCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred CHHHHHHHHHH--hceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88999999886 5555444 8889999999988887665543 4444333
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=4e-10 Score=122.70 Aligned_cols=147 Identities=14% Similarity=0.200 Sum_probs=93.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE----eccc--------------cc--ccCCCCChHHHHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAG--------------EL--ESGNAGEPAKLIRQRYREAAD 206 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~----vs~s--------------~L--~s~~~Ge~~~~Ir~~F~~A~~ 206 (428)
+.+..+|||||||||||++|+++|+.+++.... ..++ ++ .+...+.....||++...+..
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~ 115 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQF 115 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhh
Confidence 356689999999999999999999998763110 0000 11 011122345577777766621
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhc
Q 014244 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALl 286 (428)
.-..+...|+||||+|.+... . ...|+..++ +....+.+|++|++++.|.+.++
T Consensus 116 ~p~~~~~KViIIDEad~Lt~~------------a-~naLLK~LE-------------ePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 116 APVQARWKVYVIDECHMLSTA------------A-FNALLKTLE-------------EPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ChhcCCceEEEEECccccCHH------------H-HHHHHHHHh-------------cCCcCeEEEEEeCChhhhhHHHH
Confidence 111355679999999876321 1 234445555 34456788888899999999987
Q ss_pred CCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHH
Q 014244 287 RDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDI 321 (428)
Q Consensus 287 R~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~l 321 (428)
. |+..+-+ .|+.++....+..+....+ ++.+.+
T Consensus 170 S--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al 205 (620)
T PRK14948 170 S--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEAL 205 (620)
T ss_pred h--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 5 6766655 7777777777776665543 444443
No 133
>PRK06620 hypothetical protein; Validated
Probab=99.17 E-value=3.9e-10 Score=107.47 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=85.6
Q ss_pred HHHHHHHhhhCCCCCC-CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhC
Q 014244 133 VVHITKNFMSLPNIKV-PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 211 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~-p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~ 211 (428)
+...++++...++..+ -..++||||||||||+|++++++..+..++. .... ....+ .
T Consensus 27 a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~---------~ 84 (214)
T PRK06620 27 AYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL---------E 84 (214)
T ss_pred HHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH---------h
Confidence 4555555544334333 1689999999999999999999988753222 1100 00111 1
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC--CChhhcCCC
Q 014244 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST--LYAPLIRDG 289 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~--Ld~ALlR~g 289 (428)
...+|+||||+.. + ...+. .+++ .. .+..+.++|.++..|.. + ++|+.
T Consensus 85 ~~d~lliDdi~~~--------~----~~~lf----~l~N--------~~---~e~g~~ilits~~~p~~l~l-~~L~S-- 134 (214)
T PRK06620 85 KYNAFIIEDIENW--------Q----EPALL----HIFN--------II---NEKQKYLLLTSSDKSRNFTL-PDLSS-- 134 (214)
T ss_pred cCCEEEEeccccc--------h----HHHHH----HHHH--------HH---HhcCCEEEEEcCCCccccch-HHHHH--
Confidence 2368999999832 1 11222 2222 01 11233345555544544 4 66664
Q ss_pred Cce----EEEeCCCHHHHHHHHHHhccCC--CCCHhHHHHHhcCCChh
Q 014244 290 RME----KFYWAPTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 331 (428)
Q Consensus 290 Rfd----~~i~~P~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfsga 331 (428)
|+. ..+..|+.+++..+++..+... .++.+.+.-++..+++.
T Consensus 135 Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 135 RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPRE 182 (214)
T ss_pred HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC
Confidence 776 2333999999999998887654 45566666666666554
No 134
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.16 E-value=2.7e-10 Score=122.22 Aligned_cols=159 Identities=15% Similarity=0.141 Sum_probs=91.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEeccccc-------ccCCCCCh---HHHHHHHHHHH---
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGEL-------ESGNAGEP---AKLIRQRYREA--- 204 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L-------~s~~~Ge~---~~~Ir~~F~~A--- 204 (428)
.|..+||+||||||||++|+++.+++ +.+|+.+++... .+...|.. ...-...|..+
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIP 164 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcc
Confidence 45689999999999999999998753 356888876532 11111110 00000011100
Q ss_pred ---HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC-Cccc----------------cC
Q 014244 205 ---ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYN----------------KE 264 (428)
Q Consensus 205 ---~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~-~~~~----------------~~ 264 (428)
.+.+......+|||||+|.+... .+..|+.++++... .+. +.+. ..
T Consensus 165 ~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (531)
T TIGR02902 165 QPKPGAVTRAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKV-FLDSAYYNSENPNIPSHIHDIFQNGL 230 (531)
T ss_pred cccCchhhccCCcEEEEechhhCCHH-------------HHHHHHHHHHhCee-eeccccccccCcccccchhhhcccCc
Confidence 01122345679999999876432 22344445442211 111 0000 01
Q ss_pred CCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCC--CHhHHH
Q 014244 265 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV--ADDDIV 322 (428)
Q Consensus 265 ~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l--~~~~la 322 (428)
+..-.+|++|||+++.|+|++++ |+..+.. .++.+++.+|++..+...++ +.+.+.
T Consensus 231 ~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~ 289 (531)
T TIGR02902 231 PADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALE 289 (531)
T ss_pred ccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHH
Confidence 11223556677899999999987 7776666 77889999999998876544 444443
No 135
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.14 E-value=1.3e-09 Score=108.03 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=95.1
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC-----CeEEecccccccCCCCChHHHHHHHHHHHHHH
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADI 207 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~-----~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~ 207 (428)
+....++++.... .| .++||||||||||++++++++++.. +++.++.++-. ....++..+......
T Consensus 25 ~~~~l~~~i~~~~--~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~ 95 (319)
T PRK00440 25 IVERLKSYVKEKN--MP-HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFART 95 (319)
T ss_pred HHHHHHHHHhCCC--CC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhc
Confidence 4444555554432 22 4899999999999999999999732 34444433211 112233333222111
Q ss_pred HH--hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhh
Q 014244 208 IK--KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 285 (428)
Q Consensus 208 i~--~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~AL 285 (428)
.. ...+.+|+|||+|.+... ....|..+++ .......+|+++|.+..+.+++
T Consensus 96 ~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~lIl~~~~~~~l~~~l 149 (319)
T PRK00440 96 APVGGAPFKIIFLDEADNLTSD-------------AQQALRRTME-------------MYSQNTRFILSCNYSSKIIDPI 149 (319)
T ss_pred CCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHh-------------cCCCCCeEEEEeCCccccchhH
Confidence 11 134679999999876321 0123444444 1223457888899988888888
Q ss_pred cCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHHHHHhcC
Q 014244 286 IRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDT 327 (428)
Q Consensus 286 lR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~la~lt~g 327 (428)
.+ |+..+.. .|+.++...+++.++...+ ++.+.+..++..
T Consensus 150 ~s--r~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~ 192 (319)
T PRK00440 150 QS--RCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV 192 (319)
T ss_pred HH--HhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 76 5554444 8889999999988887655 445555555443
No 136
>PRK08727 hypothetical protein; Validated
Probab=99.14 E-value=5.5e-10 Score=107.61 Aligned_cols=143 Identities=14% Similarity=0.110 Sum_probs=89.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~ 225 (428)
...++||||+|||||+|+.+++++ .|...++++..++. ..+...++. .....+|+|||++.+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEA------LEGRSLVALDGLESIA 106 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHH------HhcCCEEEEeCccccc
Confidence 345999999999999999999877 35566666654332 112222222 2345699999999876
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CCCC---ChhhcCCCCc--eEEEe--C
Q 014244 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTL---YAPLIRDGRM--EKFYW--A 297 (428)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-~~~L---d~ALlR~gRf--d~~i~--~ 297 (428)
+... . ...++++++ .. ...+..||+|+|. |..+ +++|.+ || -..+. .
T Consensus 107 ~~~~--~---------~~~lf~l~n--------~~----~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~ 161 (233)
T PRK08727 107 GQRE--D---------EVALFDFHN--------RA----RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPV 161 (233)
T ss_pred CChH--H---------HHHHHHHHH--------HH----HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecC
Confidence 5432 1 122333333 11 1134568888874 4444 688886 53 22333 8
Q ss_pred CCHHHHHHHHHHhccC--CCCCHhHHHHHhcCCCh
Q 014244 298 PTREDRIGVCKGIFRN--DNVADDDIVKLVDTFPG 330 (428)
Q Consensus 298 P~~eeR~~Il~~~~~~--~~l~~~~la~lt~gfsg 330 (428)
|+.++|.+|++.+... -.++.+.+.-+++.+.|
T Consensus 162 ~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 162 LDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 9999999999986654 35566667666666654
No 137
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=3.2e-10 Score=117.47 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=90.5
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE----------eccc--------------ccccCCCC
Q 014244 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAG--------------ELESGNAG 191 (428)
Q Consensus 136 i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~----------vs~s--------------~L~s~~~G 191 (428)
..++++.. .+.|..+|||||||||||++|+++|+++.+.-.. ..++ ++. .+.|
T Consensus 27 ~L~~~~~~--~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~-~~~~ 103 (397)
T PRK14955 27 TIQNSLRM--GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNIS-EFDA 103 (397)
T ss_pred HHHHHHHh--CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeE-eecc
Confidence 34444443 3578899999999999999999999998763100 0000 000 0111
Q ss_pred C---hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 014244 192 E---PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (428)
Q Consensus 192 e---~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 268 (428)
. ....|+++.+.+...-..+...|+||||+|.+... . ...|+..++ ++...
T Consensus 104 ~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------~-~~~LLk~LE-------------ep~~~ 157 (397)
T PRK14955 104 ASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------A-FNAFLKTLE-------------EPPPH 157 (397)
T ss_pred cccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH------------H-HHHHHHHHh-------------cCCCC
Confidence 1 13345554433311111345579999999876321 1 122334444 33345
Q ss_pred ceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhH
Q 014244 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDD 320 (428)
Q Consensus 269 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~ 320 (428)
..+|++|+++..+.+++.+ |+..+-. .++.++....++..+...+ ++.+.
T Consensus 158 t~~Il~t~~~~kl~~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~a 210 (397)
T PRK14955 158 AIFIFATTELHKIPATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADA 210 (397)
T ss_pred eEEEEEeCChHHhHHHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 6677777888899988876 5543333 6778888888877776554 44443
No 138
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.11 E-value=3.2e-10 Score=114.76 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=80.1
Q ss_pred CchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHH
Q 014244 124 IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQR 200 (428)
Q Consensus 124 i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~ 200 (428)
.+|+.....+...+++|...+.- ...+++||||||||||+|+.|||+++ |..++.++..++.+.... ..
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~-~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~-------~~ 230 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDK-NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE-------IR 230 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH-------HH
Confidence 36777777777878888875432 23789999999999999999999995 778888888877632210 01
Q ss_pred HHH---HHHHH-HhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 014244 201 YRE---AADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (428)
Q Consensus 201 F~~---A~~~i-~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN 276 (428)
|.. ....+ .-....+|+|||+...... ......|+++++ . ....+.++|+|||
T Consensus 231 ~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t-----------~~~~~~Lf~iin---------~---R~~~~k~tIiTSN 287 (329)
T PRK06835 231 FNNDKELEEVYDLLINCDLLIIDDLGTEKIT-----------EFSKSELFNLIN---------K---RLLRQKKMIISTN 287 (329)
T ss_pred hccchhHHHHHHHhccCCEEEEeccCCCCCC-----------HHHHHHHHHHHH---------H---HHHCCCCEEEECC
Confidence 110 00001 1335579999999664321 223345556665 1 1223468999999
Q ss_pred CC
Q 014244 277 DF 278 (428)
Q Consensus 277 ~~ 278 (428)
.+
T Consensus 288 l~ 289 (329)
T PRK06835 288 LS 289 (329)
T ss_pred CC
Confidence 74
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=7.3e-10 Score=119.48 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=90.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE-------e-------cc--cccccCCCC---ChHHHHHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-------M-------SA--GELESGNAG---EPAKLIRQRYREAADI 207 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~-------v-------s~--s~L~s~~~G---e~~~~Ir~~F~~A~~~ 207 (428)
+.|..+|||||||+|||++|+++|+.+...--. + .+ .++. ..-| .....+|++.+.+...
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~-~idgas~~~vddIr~l~e~~~~~ 114 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVI-EIDGASNTSVQDVRQIKEEIMFP 114 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeE-EecCcccCCHHHHHHHHHHHHhc
Confidence 467899999999999999999999997653100 0 00 0000 0111 1234455555444111
Q ss_pred HHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC
Q 014244 208 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 287 (428)
Q Consensus 208 i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR 287 (428)
-..+...|+||||++.+.. ... ..|+..++ ++...+.+|++|+.+..|.++++.
T Consensus 115 p~~~~~KVvIIDEa~~Ls~------------~a~-naLLK~LE-------------epp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 115 PASSRYRVYIIDEVHMLSN------------SAF-NALLKTIE-------------EPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred hhcCCCEEEEEEChhhcCH------------HHH-HHHHHhhc-------------cCCCCEEEEEecCChHHhHHHHHH
Confidence 1245677999999987622 112 23444444 345667888888889999999876
Q ss_pred CCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 288 DGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 288 ~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
|+..+-+ .|+.++..++++..+...++.
T Consensus 169 --Rc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 169 --RCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred --hceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6665555 888899888888877655543
No 140
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.10 E-value=5.5e-10 Score=116.51 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=74.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCC-------eEEecc----cccccCCC--CChHHHHHHHHHHHHHHHH--hCCc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGIN-------PIMMSA----GELESGNA--GEPAKLIRQRYREAADIIK--KGKM 213 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~-------~i~vs~----s~L~s~~~--Ge~~~~Ir~~F~~A~~~i~--~~~p 213 (428)
.+.++|+||||||||++|+.+|..+... .+.++. .++..++. +..-......|.++...++ ...|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 5689999999999999999999987532 122221 12222221 1111111123322222224 2468
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc---cccCC----Ccc--ccCCCCCceEEEEeCCCC----C
Q 014244 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT---CVQLP----GMY--NKEENPRVPIIVTGNDFS----T 280 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~---~v~l~----~~~--~~~~~~~V~VI~TTN~~~----~ 280 (428)
++||||||+..-..+ +...++.++++.. ...++ ... .-....++.||+|+|..+ .
T Consensus 274 ~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~ 341 (459)
T PRK11331 274 YVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAV 341 (459)
T ss_pred cEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhh
Confidence 999999998643221 1122233343210 00010 000 012347899999999988 8
Q ss_pred CChhhcCCCCceEEEeCCC
Q 014244 281 LYAPLIRDGRMEKFYWAPT 299 (428)
Q Consensus 281 Ld~ALlR~gRfd~~i~~P~ 299 (428)
+|.||+| ||..+-..|+
T Consensus 342 lD~AlrR--RF~fi~i~p~ 358 (459)
T PRK11331 342 VDYALRR--RFSFIDIEPG 358 (459)
T ss_pred ccHHHHh--hhheEEecCC
Confidence 9999999 6643323554
No 141
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.10 E-value=6.5e-10 Score=108.10 Aligned_cols=114 Identities=11% Similarity=0.237 Sum_probs=72.2
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHH----H
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA----A 205 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A----~ 205 (428)
+...++.|.....- ...+++|+|+||||||+|+.+||+++ |..++.++.+++.+. ++..|..+ .
T Consensus 84 al~~a~~~~~~~~~-~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~--------l~~~~~~~~~~~~ 154 (244)
T PRK07952 84 ALSKARQYVEEFDG-NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA--------MKDTFSNSETSEE 154 (244)
T ss_pred HHHHHHHHHHhhcc-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH--------HHHHHhhccccHH
Confidence 45556666643211 13589999999999999999999997 778888888777632 22222110 0
Q ss_pred HHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 014244 206 DIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (428)
Q Consensus 206 ~~i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 278 (428)
.++. -....+|+|||++..... ......|.++++ . ....+.|+|+|||..
T Consensus 155 ~~l~~l~~~dlLvIDDig~~~~s-----------~~~~~~l~~Ii~---------~---Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 155 QLLNDLSNVDLLVIDEIGVQTES-----------RYEKVIINQIVD---------R---RSSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHhccCCEEEEeCCCCCCCC-----------HHHHHHHHHHHH---------H---HHhCCCCEEEeCCCC
Confidence 1111 235789999999775321 122245555655 1 223467999999964
No 142
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=8.3e-10 Score=119.69 Aligned_cols=155 Identities=12% Similarity=0.126 Sum_probs=98.2
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec-c--------------------cccccCCC-
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS-A--------------------GELESGNA- 190 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs-~--------------------s~L~s~~~- 190 (428)
+....++++.. .+.|..+|||||+|+|||++|+++|+.+.+.....+ + .++.....
T Consensus 32 ~v~~L~~~~~~--gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~ 109 (598)
T PRK09111 32 MVRTLTNAFET--GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAA 109 (598)
T ss_pred HHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEeccc
Confidence 33444455443 356889999999999999999999999876432111 0 01110000
Q ss_pred -CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 014244 191 -GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (428)
Q Consensus 191 -Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V 269 (428)
..+...||++...+...--.....|+||||+|.+... . ...|+..+. ++...+
T Consensus 110 s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~------------a-~naLLKtLE-------------ePp~~~ 163 (598)
T PRK09111 110 SHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA------------A-FNALLKTLE-------------EPPPHV 163 (598)
T ss_pred ccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH------------H-HHHHHHHHH-------------hCCCCe
Confidence 0123456776665521112456779999999876321 1 123444444 344567
Q ss_pred eEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 270 ~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
.+|++|+.++.+.+.++. |+.++-. .|+.++...+++.++...++.
T Consensus 164 ~fIl~tte~~kll~tI~S--Rcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 164 KFIFATTEIRKVPVTVLS--RCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred EEEEEeCChhhhhHHHHh--heeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 788888888889988775 6665545 889999999888888766543
No 143
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.9e-10 Score=114.77 Aligned_cols=148 Identities=20% Similarity=0.274 Sum_probs=102.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~-s~~~Ge~-~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~ 227 (428)
..|||.||.|+|||+||+.+|+-++++|....+..|. ..|+|+. +..|..++..|.--+.+.+..|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 3799999999999999999999999999999999994 5799996 4566777777754455777889999999999754
Q ss_pred CC-CCcccchhhHHHHHHHHHhhcCCccccCCCccc-cCCCCCceEEEEeC-------CCCCCChhhcCCCCceEEEe--
Q 014244 228 MG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGN-------DFSTLYAPLIRDGRMEKFYW-- 296 (428)
Q Consensus 228 r~-~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~-~~~~~~V~VI~TTN-------~~~~Ld~ALlR~gRfd~~i~-- 296 (428)
.. -.....+...-|++.|+.++.. +.|.+++... .......+.|=||| -...||.-+-| |++....
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG-tvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGF 383 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG-TVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGF 383 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc-cEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhccc
Confidence 32 1223466778889999999884 3344432211 11122223333333 45567776666 6665554
Q ss_pred -CCCH
Q 014244 297 -APTR 300 (428)
Q Consensus 297 -~P~~ 300 (428)
.|+.
T Consensus 384 g~~s~ 388 (564)
T KOG0745|consen 384 GAPSS 388 (564)
T ss_pred CCCCC
Confidence 5633
No 144
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.07 E-value=1.1e-09 Score=123.67 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=90.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC-----CCCChHHHH----HHHHHHHHHHHHhCCceEE
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCCL 216 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~-----~~Ge~~~~I----r~~F~~A~~~i~~~~p~IL 216 (428)
...+||+||||||||++|+++|..+ +.+++.++.+++.+. .+|.+...+ ...+..+ ++....+||
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~---v~~~p~~vl 671 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEA---VRRKPYSVV 671 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHH---HHcCCCcEE
Confidence 3568999999999999999999986 457888777765322 222211100 0111111 245556799
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC----------------
Q 014244 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---------------- 280 (428)
Q Consensus 217 fIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~---------------- 280 (428)
||||||+.. ..+...|++++++-... ++........+.+||+|||....
T Consensus 672 llDeieka~-------------~~v~~~Ll~~l~~g~l~--d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~ 736 (852)
T TIGR03346 672 LFDEVEKAH-------------PDVFNVLLQVLDDGRLT--DGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMRE 736 (852)
T ss_pred EEeccccCC-------------HHHHHHHHHHHhcCcee--cCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHH
Confidence 999998652 23456677777733211 11111233467899999998322
Q ss_pred ---------CChhhcCCCCceEEEe--CCCHHHHHHHHHHhc
Q 014244 281 ---------LYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (428)
Q Consensus 281 ---------Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~ 311 (428)
+.|.|+ .|+|.++. +++.++..+|+...+
T Consensus 737 ~~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 737 AVMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred HHHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHH
Confidence 445666 48987776 888999999976554
No 145
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=2.5e-09 Score=116.36 Aligned_cols=170 Identities=15% Similarity=0.202 Sum_probs=101.4
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE----------ecc
Q 014244 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSA 182 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~----------vs~ 182 (428)
-+|+.++|. ..+....++.+.. -+.|..+||+||||||||++|+++|+.+.+.-.. -.+
T Consensus 13 ~~f~eivGQ---------e~i~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 13 SKFADITAQ---------EHITHTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CCHHHhcCc---------HHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 344566664 3344445555543 3678899999999999999999999998773110 000
Q ss_pred c------------cc-ccCCCCC---hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHH
Q 014244 183 G------------EL-ESGNAGE---PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 246 (428)
Q Consensus 183 s------------~L-~s~~~Ge---~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~ 246 (428)
+ .+ ...+.|. +...|+.+-+.....--.+...|+||||+|.+... -...|+
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a~naLL 148 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------AFNAFL 148 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------HHHHHH
Confidence 0 00 0001121 13445554433311111455679999998876321 123455
Q ss_pred HhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHH
Q 014244 247 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDI 321 (428)
Q Consensus 247 ~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~l 321 (428)
..++ ++...+.+|++|+++..|.+++.. |+..+-. .|+.++....+..++...+ ++.+.+
T Consensus 149 K~LE-------------ePp~~tv~IL~t~~~~kLl~TI~S--Rc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal 211 (620)
T PRK14954 149 KTLE-------------EPPPHAIFIFATTELHKIPATIAS--RCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADAL 211 (620)
T ss_pred HHHh-------------CCCCCeEEEEEeCChhhhhHHHHh--hceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5555 334456677777888999999886 5555444 7888888888887776554 554443
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.04 E-value=3.3e-09 Score=119.65 Aligned_cols=141 Identities=14% Similarity=0.208 Sum_probs=88.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC-----CCCChHHHH----HHHHHHHHHHHHhCCceEEEe
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCCLMI 218 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~-----~~Ge~~~~I----r~~F~~A~~~i~~~~p~ILfI 218 (428)
.+||+||||||||++|++||+.+ +.+++.++.+++... .+|.+...+ ...+..+ ++....+||||
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~---v~~~p~~vLll 676 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEA---VRRRPYSVILL 676 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHH---HHhCCCCeEEE
Confidence 58999999999999999999986 446787777665422 111110000 0112222 23444589999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC--------------------
Q 014244 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------------------- 278 (428)
Q Consensus 219 DEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------------------- 278 (428)
||+++.. ..+...|++++++-... ++........+.+||+|||..
T Consensus 677 DEieka~-------------~~v~~~Ll~ile~g~l~--d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~ 741 (857)
T PRK10865 677 DEVEKAH-------------PDVFNILLQVLDDGRLT--DGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELV 741 (857)
T ss_pred eehhhCC-------------HHHHHHHHHHHhhCcee--cCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHH
Confidence 9998642 23456677777632211 111112334667899999973
Q ss_pred -----CCCChhhcCCCCceEEEe--CCCHHHHHHHHHHhc
Q 014244 279 -----STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (428)
Q Consensus 279 -----~~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~ 311 (428)
..+.|+|+. |+|.++. +++.++..+|++.++
T Consensus 742 ~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 742 LGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred HHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 234567774 8977666 888888888876665
No 147
>PRK06921 hypothetical protein; Provisional
Probab=99.04 E-value=1.3e-09 Score=107.35 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=53.8
Q ss_pred HHHHHHHhhhCCC---CCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEecccccccCCCCChHHHHHHHHHHHH
Q 014244 133 VVHITKNFMSLPN---IKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAA 205 (428)
Q Consensus 133 ~~~i~K~~l~~~g---~~~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~ 205 (428)
+...+++|+.... -....+++||||||||||+|+.|||+++ |..+++++..++.. .++..|....
T Consensus 98 ~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~--------~l~~~~~~~~ 169 (266)
T PRK06921 98 AYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG--------DLKDDFDLLE 169 (266)
T ss_pred HHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH--------HHHHHHHHHH
Confidence 4445556654221 1235689999999999999999999985 66777887765542 1223333222
Q ss_pred HHHH-hCCceEEEeccccc
Q 014244 206 DIIK-KGKMCCLMINDLDA 223 (428)
Q Consensus 206 ~~i~-~~~p~ILfIDEiDa 223 (428)
+.+. -....+|+|||+..
T Consensus 170 ~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 170 AKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred HHHHHhcCCCEEEEecccc
Confidence 2222 34567999999954
No 148
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=2.2e-09 Score=114.72 Aligned_cols=146 Identities=17% Similarity=0.213 Sum_probs=92.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccCCCCChHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~~~Ir~~F~ 202 (428)
+.|..+|||||||+|||++|+++|+.+... ++.++++. . .....||++..
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas----~--~gId~IRelie 107 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS----N--RGIDDIRELIE 107 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc----c--cCHHHHHHHHH
Confidence 578889999999999999999999997421 12222110 0 11344555554
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014244 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
.....-..+...|++|||+|.+... ....|+..+. ++...+.+|++|+++..|.
T Consensus 108 ~~~~~P~~~~~KVvIIDEad~Lt~~-------------A~NALLK~LE-------------Epp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 108 QTKYKPSMARFKIFIIDEVHMLTKE-------------AFNALLKTLE-------------EPPSYVKFILATTDPLKLP 161 (535)
T ss_pred HHhhCcccCCeEEEEEECcccCCHH-------------HHHHHHHHHh-------------hcCCceEEEEEECChhhCc
Confidence 4310001244569999999765321 1224445555 3345567888889999999
Q ss_pred hhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC--HhHHHHHhc
Q 014244 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLVD 326 (428)
Q Consensus 283 ~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~--~~~la~lt~ 326 (428)
++++. |+.++.. .++.++....++.++...++. .+.+..++.
T Consensus 162 ~tI~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 162 ATILS--RTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred hHHHh--hceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99886 6665555 778888888888877766554 444443333
No 149
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.03 E-value=1.7e-09 Score=121.68 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=87.9
Q ss_pred CCCcE-EEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccccc-----CCCCChHHHH-----HHHHHHHHHHHHhCC
Q 014244 147 KVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----GNAGEPAKLI-----RQRYREAADIIKKGK 212 (428)
Q Consensus 147 ~~p~g-lLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s-----~~~Ge~~~~I-----r~~F~~A~~~i~~~~ 212 (428)
..|.+ +||+||||||||++|+++|+.+ +.+++.+..+++.+ +..|.+...+ ..+.... +...
T Consensus 536 ~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~----~~~p 611 (821)
T CHL00095 536 NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAV----RKKP 611 (821)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHH----HhCC
Confidence 34544 7899999999999999999997 35677777766532 1222211100 1122222 4555
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC------------
Q 014244 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST------------ 280 (428)
Q Consensus 213 p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~------------ 280 (428)
.+||+|||+|+.. ..+...|++++++-.... +........+.++|+|||....
T Consensus 612 ~~VvllDeieka~-------------~~v~~~Llq~le~g~~~d--~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~ 676 (821)
T CHL00095 612 YTVVLFDEIEKAH-------------PDIFNLLLQILDDGRLTD--SKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFE 676 (821)
T ss_pred CeEEEECChhhCC-------------HHHHHHHHHHhccCceec--CCCcEEecCceEEEEeCCcchHHHHhhccccCCc
Confidence 6899999999753 224567777877322111 1111234478899999996421
Q ss_pred -------------------------CChhhcCCCCceEEEe--CCCHHHHHHHHHHhc
Q 014244 281 -------------------------LYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (428)
Q Consensus 281 -------------------------Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~ 311 (428)
+.|+|+ +|+|.++. ..+.++..+|+...+
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~f~pefl--nRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 677 LSENQLSEKQYKRLSNLVNEELKQFFRPEFL--NRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCHHHh--ccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 223455 47765554 667777777765554
No 150
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.7e-09 Score=108.03 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=103.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE----------------ecccccc---cCCCC--ChHHHHHHHHHHH
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------------MSAGELE---SGNAG--EPAKLIRQRYREA 204 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~----------------vs~s~L~---s~~~G--e~~~~Ir~~F~~A 204 (428)
.+.|..+||+||+|+|||++|+++|+.+.+.--. -+-+++. ....+ -....||++-+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999997552100 0001110 00001 1245667665555
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 014244 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (428)
Q Consensus 205 ~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A 284 (428)
...-..+...|++|||+|.+... -...|+..++ ++..++.+|.+|++++.|.|.
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~~-------------aaNaLLK~LE-------------EPp~~~~fiL~t~~~~~ll~T 152 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNRN-------------AANALLKSLE-------------EPSGDTVLLLISHQPSRLLPT 152 (328)
T ss_pred hhccccCCCeEEEECChhhCCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEECChhhCcHH
Confidence 22223556779999999876321 1233444555 556778999999999999999
Q ss_pred hcCCCCceEEEe-CCCHHHHHHHHHHhccCC-CCCHhHHHHHhcCCChhhHHh
Q 014244 285 LIRDGRMEKFYW-APTREDRIGVCKGIFRND-NVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 285 LlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~-~l~~~~la~lt~gfsgadL~~ 335 (428)
++. |+..+.. .|+.++-.+.+....... .-....++.++.|-++..+++
T Consensus 153 I~S--Rc~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 153 IKS--RCQQQACPLPSNEESLQWLQQALPESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHh--hceeeeCCCcCHHHHHHHHHHhcccCChHHHHHHHHHcCCCHHHHHHH
Confidence 886 7777666 888888888877654211 111234566777766655544
No 151
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.03 E-value=1.5e-09 Score=107.72 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=83.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC------------------------CCeEEecccccccCCCCChHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMG------------------------INPIMMSAGELESGNAGEPAKLIRQRYR 202 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg------------------------~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~ 202 (428)
+.|..+||+||||||||++|.++|+++. -.++.+++++..... .....++++-+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 4566899999999999999999999987 356667776554322 11222333322
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014244 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
.....-..+..-|++|||+|.+.... .+.|+..+. ++..+.++|++||+++.|-
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~A-------------~nallk~lE-------------ep~~~~~~il~~n~~~~il 153 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTEDA-------------ANALLKTLE-------------EPPKNTRFILITNDPSKIL 153 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHHH-------------HHHHHHHhc-------------cCCCCeEEEEEcCChhhcc
Confidence 22000012567899999999875421 122333333 5667889999999999999
Q ss_pred hhhcCCCCceEEEeC-CCHHHHHH
Q 014244 283 APLIRDGRMEKFYWA-PTREDRIG 305 (428)
Q Consensus 283 ~ALlR~gRfd~~i~~-P~~eeR~~ 305 (428)
+++.. |+..+... |+...+..
T Consensus 154 ~tI~S--Rc~~i~f~~~~~~~~i~ 175 (325)
T COG0470 154 PTIRS--RCQRIRFKPPSRLEAIA 175 (325)
T ss_pred chhhh--cceeeecCCchHHHHHH
Confidence 98876 77666664 44444333
No 152
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.02 E-value=6.9e-09 Score=100.40 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=99.2
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH-
Q 014244 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK- 209 (428)
Q Consensus 134 ~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~- 209 (428)
..+.+|........+...+||||++|||||++++++.++ -|+.+|.+...+|.+ +..+++.. +
T Consensus 37 ~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l----~~ 103 (249)
T PF05673_consen 37 EALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLL----RD 103 (249)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHH----hc
Confidence 334444443333346789999999999999999999997 477888888776651 23344433 4
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC--
Q 014244 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR-- 287 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR-- 287 (428)
...+-|||+||+.- .. + .+. ...|..+|+ |. ......+|.|.+|+||-..++.-+.-
T Consensus 104 ~~~kFIlf~DDLsF--e~-~-d~~--------yk~LKs~Le--------Gg-le~~P~NvliyATSNRRHLv~E~~~d~~ 162 (249)
T PF05673_consen 104 RPYKFILFCDDLSF--EE-G-DTE--------YKALKSVLE--------GG-LEARPDNVLIYATSNRRHLVPESFSDRE 162 (249)
T ss_pred CCCCEEEEecCCCC--CC-C-cHH--------HHHHHHHhc--------Cc-cccCCCcEEEEEecchhhccchhhhhcc
Confidence 45678999999741 11 1 111 133444555 33 23446899999999997766664322
Q ss_pred -------------------CCCceEEEe--CCCHHHHHHHHHHhccCCCCCH
Q 014244 288 -------------------DGRMEKFYW--APTREDRIGVCKGIFRNDNVAD 318 (428)
Q Consensus 288 -------------------~gRfd~~i~--~P~~eeR~~Il~~~~~~~~l~~ 318 (428)
..||-..+. .|+.++=++|++.++...+++.
T Consensus 163 ~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 163 DIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred CCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 125555555 8899999999999987665543
No 153
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=2.5e-09 Score=116.10 Aligned_cols=160 Identities=11% Similarity=0.141 Sum_probs=94.1
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe---cc--------------cccc--cCCCCChHHH
Q 014244 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SA--------------GELE--SGNAGEPAKL 196 (428)
Q Consensus 136 i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v---s~--------------s~L~--s~~~Ge~~~~ 196 (428)
..++.+... +.+..+|||||||||||++|+++|+.+++..-.- .+ .++. +.........
T Consensus 27 ~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ 104 (585)
T PRK14950 27 TLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDD 104 (585)
T ss_pred HHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHH
Confidence 334444322 4677899999999999999999999986422100 00 0110 0000112334
Q ss_pred HHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 014244 197 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (428)
Q Consensus 197 Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN 276 (428)
+|++.+.+...-......|+||||+|.+.. ... ..|+..++ +....+.+|++|+
T Consensus 105 ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~a~-naLLk~LE-------------epp~~tv~Il~t~ 158 (585)
T PRK14950 105 AREIIERVQFRPALARYKVYIIDEVHMLST------------AAF-NALLKTLE-------------EPPPHAIFILATT 158 (585)
T ss_pred HHHHHHHHhhCcccCCeEEEEEeChHhCCH------------HHH-HHHHHHHh-------------cCCCCeEEEEEeC
Confidence 555544331111134567999999986532 112 23444455 2234567888888
Q ss_pred CCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCC--CCHhHHHHHh
Q 014244 277 DFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLV 325 (428)
Q Consensus 277 ~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~--l~~~~la~lt 325 (428)
.++.+.+.+.. |+.++.. .++.++...++..++...+ ++.+.+..++
T Consensus 159 ~~~kll~tI~S--R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La 208 (585)
T PRK14950 159 EVHKVPATILS--RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA 208 (585)
T ss_pred ChhhhhHHHHh--ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88888888765 5655555 7888888888887776654 4444444333
No 154
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.01 E-value=6.3e-10 Score=112.31 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=87.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccccc--CCCCChHHHHH----HHHHHHHH-HHHhCCceEEEecccc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES--GNAGEPAKLIR----QRYREAAD-IIKKGKMCCLMINDLD 222 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s--~~~Ge~~~~Ir----~~F~~A~~-~i~~~~p~ILfIDEiD 222 (428)
..+||.||||||||++|+++|..++.+|+.+.+..-.. ...|...-..+ ..|..-.. +..... +|+|+|||+
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEIn 122 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEIN 122 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc-eEEEEeccc
Confidence 36999999999999999999999999999987764321 22333211111 00100000 000111 599999997
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-----CCCCCChhhcCCCCceEEEe-
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYW- 296 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN-----~~~~Ld~ALlR~gRfd~~i~- 296 (428)
... ..++..|+..++. ..+.+++.....-.....||+|+| ....|++|+++ ||-..++
T Consensus 123 ra~-------------p~~q~aLl~~l~e-~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 123 RAP-------------PEVQNALLEALEE-RQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred cCC-------------HHHHHHHHHHHhC-cEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 543 3344566666662 223333332112235667888889 78889999997 8855555
Q ss_pred -CC-CHHHHHHHHHHhc
Q 014244 297 -AP-TREDRIGVCKGIF 311 (428)
Q Consensus 297 -~P-~~eeR~~Il~~~~ 311 (428)
.| ..++...+.....
T Consensus 187 ~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 187 DYPDSEEEERIILARVG 203 (329)
T ss_pred CCCCchHHHHHHHHhCc
Confidence 66 5555555554444
No 155
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.00 E-value=6.1e-09 Score=113.62 Aligned_cols=151 Identities=16% Similarity=0.220 Sum_probs=88.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc-------cCCCCChHHHHHHHHHHHHH----
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE-------SGNAGEPAKLIRQRYREAAD---- 206 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~-------s~~~Ge~~~~Ir~~F~~A~~---- 206 (428)
.|..++|+||||||||++|+++++.. +.+|+.+++..+. ..+.|.... ..+..+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~---~~~~~a~~~l~~ 250 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHD---PIYQGARRDLAE 250 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccH---HHHHHHHHHHHH
Confidence 35679999999999999999998765 3568888876552 111221100 01111111
Q ss_pred ---------HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc---------------
Q 014244 207 ---------IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN--------------- 262 (428)
Q Consensus 207 ---------~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~--------------- 262 (428)
.+......+|||||++.+... .+..|+.++++.......+.|.
T Consensus 251 ~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~ 317 (615)
T TIGR02903 251 TGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFE 317 (615)
T ss_pred cCCCchhcCchhhcCCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcc
Confidence 112334569999998765321 2234445554321100011110
Q ss_pred cCCCCCceEEE-EeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCC
Q 014244 263 KEENPRVPIIV-TGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV 316 (428)
Q Consensus 263 ~~~~~~V~VI~-TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l 316 (428)
.....++.+|+ |||.++.++++|++ ||..+.. .++.+++.+|++.++...++
T Consensus 318 ~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v 371 (615)
T TIGR02903 318 EGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINV 371 (615)
T ss_pred cCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 01122344444 66789999999875 8887766 77899999999988776543
No 156
>PHA02244 ATPase-like protein
Probab=98.99 E-value=2.1e-09 Score=109.66 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=80.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccccc---CCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s---~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~ 225 (428)
...|||+||||||||++|+++|..++.+|+.++...-.. .+...........|-+| .....+|+|||++...
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDASI 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcCC
Confidence 345999999999999999999999999999887421010 11111111111223333 3456799999998653
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----------CCCChhhcCCCCceEE
Q 014244 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----------STLYAPLIRDGRMEKF 294 (428)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-----------~~Ld~ALlR~gRfd~~ 294 (428)
.. +...|..++++-. ....+.. .....+..+|+|+|.+ ..|++|++. ||-.+
T Consensus 194 p~-------------vq~~L~~lLd~r~-l~l~g~~-i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~I 256 (383)
T PHA02244 194 PE-------------ALIIINSAIANKF-FDFADER-VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAPI 256 (383)
T ss_pred HH-------------HHHHHHHHhccCe-EEecCcE-EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEEe
Confidence 22 1223334444221 1111110 1123677899999973 678999986 88665
Q ss_pred Ee-CCCHHHHHHHH
Q 014244 295 YW-APTREDRIGVC 307 (428)
Q Consensus 295 i~-~P~~eeR~~Il 307 (428)
.. .|+ +.-..|+
T Consensus 257 ~~dyp~-~~E~~i~ 269 (383)
T PHA02244 257 EFDYDE-KIEHLIS 269 (383)
T ss_pred eCCCCc-HHHHHHh
Confidence 55 676 3333444
No 157
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.96 E-value=3.7e-09 Score=106.04 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHH--HHHHHH-hCCceEEEeccc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE--AADIIK-KGKMCCLMINDL 221 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~--A~~~i~-~~~p~ILfIDEi 221 (428)
..+|++||||||||||+|+.|||+++ |..+..++.+++.... +..|.. ..+.+. -....||+||||
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l--------k~~~~~~~~~~~l~~l~~~dlLiIDDi 226 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL--------KNSISDGSVKEKIDAVKEAPVLMLDDI 226 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH--------HHHHhcCcHHHHHHHhcCCCEEEEecC
Confidence 46899999999999999999999996 7777777777665321 122211 011112 345679999999
Q ss_pred ccc
Q 014244 222 DAG 224 (428)
Q Consensus 222 Da~ 224 (428)
.+.
T Consensus 227 G~e 229 (306)
T PRK08939 227 GAE 229 (306)
T ss_pred CCc
Confidence 653
No 158
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=1.6e-08 Score=103.84 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=100.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE-----------e---------------ccccc--ccC---CCC----
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-----------M---------------SAGEL--ESG---NAG---- 191 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~-----------v---------------s~s~L--~s~---~~G---- 191 (428)
+.|..+||+||+|+||+++|.++|+.+-+.--. + +-+++ +.. ..|
T Consensus 39 rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 39 RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccc
Confidence 678999999999999999999999996432100 0 00011 000 001
Q ss_pred --ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 014244 192 --EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (428)
Q Consensus 192 --e~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V 269 (428)
-....||++-+.+......+.+.|++|||+|.+-. .....|+..+. ++..++
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-------------~aanaLLK~LE-------------epp~~~ 172 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-------------NAANALLKVLE-------------EPPARS 172 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------------HHHHHHHHHHh-------------cCCCCe
Confidence 01233555444432122256788999999986521 11223444444 444667
Q ss_pred eEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC-HhHHHHHhcCCChhhHHh
Q 014244 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 270 ~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~-~~~la~lt~gfsgadL~~ 335 (428)
.+|++|++++.+.+.+++ |+..+-. .|+.++-.+++........-. ...+++++.|-++..+.+
T Consensus 173 ~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 889999999999887754 7777666 889999999888765321111 134677777777665554
No 159
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2e-08 Score=100.72 Aligned_cols=145 Identities=12% Similarity=0.127 Sum_probs=89.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc--cCCCCC--hHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGE--PAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~--s~~~Ge--~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
+.|..+||+||+|+|||++|+++|+.+-+....-+.+++. ..+.|. ....||++-+.+...-..+...|++|||+|
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad 103 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSE 103 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechh
Confidence 5688999999999999999999999864321111111110 000111 223466655544111124566799999997
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 301 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~e 301 (428)
.+... -...|+..+. ++..++.+|.+|+.++.|.|.++. |+..+.. .|+.+
T Consensus 104 ~m~~~-------------a~naLLK~LE-------------epp~~t~~il~~~~~~~ll~TI~S--Rc~~~~~~~~~~~ 155 (313)
T PRK05564 104 KMTEQ-------------AQNAFLKTIE-------------EPPKGVFIILLCENLEQILDTIKS--RCQIYKLNRLSKE 155 (313)
T ss_pred hcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEeCChHhCcHHHHh--hceeeeCCCcCHH
Confidence 65211 1224445555 455677888888999999999876 6655444 77888
Q ss_pred HHHHHHHHhccCCCCCHhHH
Q 014244 302 DRIGVCKGIFRNDNVADDDI 321 (428)
Q Consensus 302 eR~~Il~~~~~~~~l~~~~l 321 (428)
+....+...+. +++.+.+
T Consensus 156 ~~~~~l~~~~~--~~~~~~~ 173 (313)
T PRK05564 156 EIEKFISYKYN--DIKEEEK 173 (313)
T ss_pred HHHHHHHHHhc--CCCHHHH
Confidence 88777766543 3444443
No 160
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=2.9e-08 Score=101.48 Aligned_cols=162 Identities=12% Similarity=0.075 Sum_probs=97.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCe------EEe--cc--------------cccc---cCC-C--C-----C
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP------IMM--SA--------------GELE---SGN-A--G-----E 192 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~------i~v--s~--------------s~L~---s~~-~--G-----e 192 (428)
.+.|..+||+||+|+|||++|+.+|+.+.... ... .+ +++. ..+ . | -
T Consensus 42 grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I 121 (351)
T PRK09112 42 GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAI 121 (351)
T ss_pred CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccC
Confidence 36788999999999999999999999975521 100 00 0110 000 0 0 1
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 014244 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (428)
Q Consensus 193 ~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 272 (428)
+...+|.+-+........+...|++|||+|.+-.. . ...|+..++ ++..++.+|
T Consensus 122 ~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~------------a-anaLLk~LE-------------Epp~~~~fi 175 (351)
T PRK09112 122 TVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN------------A-ANAILKTLE-------------EPPARALFI 175 (351)
T ss_pred CHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH------------H-HHHHHHHHh-------------cCCCCceEE
Confidence 12334443333211112556779999999876221 1 123444445 344567788
Q ss_pred EEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHhH---HHHHhcCCChhhHHh
Q 014244 273 VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDD---IVKLVDTFPGQSIDF 335 (428)
Q Consensus 273 ~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~~---la~lt~gfsgadL~~ 335 (428)
+.|+.++.+.|.++. |+..+-. .|+.++..+++.......+++.+. +.+.+.|-+...+.+
T Consensus 176 Lit~~~~~llptIrS--Rc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 176 LISHSSGRLLPTIRS--RCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEECChhhccHHHHh--hccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 888999999988764 6654444 889999999988754333344443 555566655555544
No 161
>PRK08181 transposase; Validated
Probab=98.91 E-value=5.8e-09 Score=102.84 Aligned_cols=100 Identities=18% Similarity=0.170 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccccCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s~~~Ge~-~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
..+++|+||||||||+||.+|+++ .|..++.++..+|........ .......+. .-.++.+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~------~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIA------KLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHH------HHhcCCEEEEeccccc
Confidence 468999999999999999999976 477788888877764321000 000111111 2346789999999765
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 278 (428)
.... .....|+++++ .. ..+.++|+|||.+
T Consensus 180 ~~~~-----------~~~~~Lf~lin--------~R-----~~~~s~IiTSN~~ 209 (269)
T PRK08181 180 TKDQ-----------AETSVLFELIS--------AR-----YERRSILITANQP 209 (269)
T ss_pred cCCH-----------HHHHHHHHHHH--------HH-----HhCCCEEEEcCCC
Confidence 4321 12345566666 11 1224899999976
No 162
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.7e-08 Score=99.80 Aligned_cols=139 Identities=20% Similarity=0.306 Sum_probs=93.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCC-----eEEecccccccCC---------------CCChHHHHHHHHHHHHHH
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESGN---------------AGEPAKLIRQRYREAADI 207 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~-----~i~vs~s~L~s~~---------------~Ge~~~~Ir~~F~~A~~~ 207 (428)
.|..+++|||||||||.+++.+++++.-. ++++++-.+.+.+ .|.+. .+.|+...+.
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~---~~~~~~l~~~ 117 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSS---LEILKRLYDN 117 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCch---HHHHHHHHHH
Confidence 45569999999999999999999996443 7888876553321 12221 1333333333
Q ss_pred HH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC---CCCCh
Q 014244 208 IK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---STLYA 283 (428)
Q Consensus 208 i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~---~~Ld~ 283 (428)
+. .....||++||+|.+..+.+ ..|++|+..++ ....+|.+|+.+|+. +.+|+
T Consensus 118 ~~~~~~~~IvvLDEid~L~~~~~-------------~~LY~L~r~~~----------~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 118 LSKKGKTVIVILDEVDALVDKDG-------------EVLYSLLRAPG----------ENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHhcCCeEEEEEcchhhhccccc-------------hHHHHHHhhcc----------ccceeEEEEEEeccHHHHHHhhh
Confidence 34 56788999999999987643 34555544111 125778999999987 47788
Q ss_pred hhcCCCCceEEEe-CCCHHHHHHHHHHhcc
Q 014244 284 PLIRDGRMEKFYW-APTREDRIGVCKGIFR 312 (428)
Q Consensus 284 ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~ 312 (428)
-+...-....+.+ +.+.++...|++.-..
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 7765444444444 7799999999865543
No 163
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2.2e-08 Score=109.10 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=89.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------------------eEEecccccccCCCCChHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAGEPAKLIRQRY 201 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~-------------------------~i~vs~s~L~s~~~Ge~~~~Ir~~F 201 (428)
+.|..+|||||+|+|||++|+++|+.+.+. ++.+++. -......|+.+.
T Consensus 37 ~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~------~~~~vd~Ir~li 110 (614)
T PRK14971 37 KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAA------SNNSVDDIRNLI 110 (614)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccc------ccCCHHHHHHHH
Confidence 568899999999999999999999997642 1112111 011234466665
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 014244 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (428)
Q Consensus 202 ~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 281 (428)
..+...--.+...|+||||+|.+... ....|+..++ ++.....+|++|+....|
T Consensus 111 ~~~~~~P~~~~~KVvIIdea~~Ls~~-------------a~naLLK~LE-------------epp~~tifIL~tt~~~kI 164 (614)
T PRK14971 111 EQVRIPPQIGKYKIYIIDEVHMLSQA-------------AFNAFLKTLE-------------EPPSYAIFILATTEKHKI 164 (614)
T ss_pred HHHhhCcccCCcEEEEEECcccCCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEeCCchhc
Confidence 55411111344569999999876321 1234555555 333456677788788899
Q ss_pred ChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 014244 282 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 282 d~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~ 317 (428)
.++|+. |+..+-. .++.++....++.++...++.
T Consensus 165 l~tI~S--Rc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 165 LPTILS--RCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred hHHHHh--hhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 999876 6655544 788888888888877766554
No 164
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=4.4e-08 Score=99.67 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=100.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCe-------------------------EEecccccccC-------------
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINP-------------------------IMMSAGELESG------------- 188 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~-------------------------i~vs~s~L~s~------------- 188 (428)
+.|.++||+||+|+||+++|+++|+.+.+.. ..+........
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 7899999999999999999999999975532 11111100000
Q ss_pred -CCC---------ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC
Q 014244 189 -NAG---------EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 258 (428)
Q Consensus 189 -~~G---------e~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~ 258 (428)
-.| -....||++.+........+...|++||+.|.+... -...|+..++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLE-------- 157 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-------------AANALLKTLE-------- 157 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH-------------HHHHHHHHhc--------
Confidence 000 112345555444311112455669999999876321 1234445555
Q ss_pred CccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC-HhHHHHHhcCCChhhHHh
Q 014244 259 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 259 ~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~-~~~la~lt~gfsgadL~~ 335 (428)
++..++.+|.+|++++.|.|.+++ |+-.+.. .|+.++..+.+... +++ .+.+..++.|=++..+++
T Consensus 158 -----EPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~~----~~~~~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 158 -----EPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAAQ----GVADADALLAEAGGAPLAALAL 225 (342)
T ss_pred -----CCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHHc----CCChHHHHHHHcCCCHHHHHHH
Confidence 667889999999999999999887 7766655 88899988888664 122 334566666666655544
No 165
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.87 E-value=2.1e-07 Score=93.89 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=40.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC--CCeEEecccccccCCCCChH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPA 194 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg--~~~i~vs~s~L~s~~~Ge~~ 194 (428)
..-+|+|+.||||||||.||-+||+++| .||+.++++++.+--+..++
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE 112 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTE 112 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHH
Confidence 3468999999999999999999999997 69999999998776444443
No 166
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.1e-08 Score=112.52 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=93.9
Q ss_pred CCCCc-EEEEEcCCCchHHHHHHHHHHHhC---CCeEEecccccccC------------CCCChHHHHHHHHHHHHHHHH
Q 014244 146 IKVPL-ILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIK 209 (428)
Q Consensus 146 ~~~p~-glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~s~L~s~------------~~Ge~~~~Ir~~F~~A~~~i~ 209 (428)
-+.|. ..||.||+|+|||.||+++|..+. -.++.++.|++..+ |+|-.+. ..+-+| ++
T Consensus 517 p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG---G~LTEa---VR 590 (786)
T COG0542 517 PNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG---GQLTEA---VR 590 (786)
T ss_pred CCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc---cchhHh---hh
Confidence 34454 566789999999999999999987 78899998887543 4432211 122222 36
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC----------
Q 014244 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---------- 279 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~---------- 279 (428)
+...|||+||||++-. .-+..+|++++|+-. -.|+.-+...-.+.+||+|||--.
T Consensus 591 r~PySViLlDEIEKAH-------------pdV~nilLQVlDdGr--LTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~ 655 (786)
T COG0542 591 RKPYSVILLDEIEKAH-------------PDVFNLLLQVLDDGR--LTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGD 655 (786)
T ss_pred cCCCeEEEechhhhcC-------------HHHHHHHHHHhcCCe--eecCCCCEEecceeEEEEecccchHHHHhhcccc
Confidence 7778999999998743 335568888888322 112222234557889999999421
Q ss_pred ------------------CCChhhcCCCCceEEEe--CCCHHHHHHHHHHhc
Q 014244 280 ------------------TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (428)
Q Consensus 280 ------------------~Ld~ALlR~gRfd~~i~--~P~~eeR~~Il~~~~ 311 (428)
.+.|+|+. |+|.++. .-+.+...+|+..++
T Consensus 656 ~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 656 DFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred ccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 23455553 7775554 567777777766555
No 167
>PRK09087 hypothetical protein; Validated
Probab=98.85 E-value=4.1e-08 Score=94.39 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=79.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 229 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~ 229 (428)
.-++||||+|||||+|++++++..+..+ ++...+. .+.+... ...+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~-----------~~~~~~~-------~~~~l~iDDi~~~~~--- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIG-----------SDAANAA-------AEGPVLIEDIDAGGF--- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcc-----------hHHHHhh-------hcCeEEEECCCCCCC---
Confidence 3589999999999999999999876553 3332222 0111111 124899999986521
Q ss_pred CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CC---CCChhhcCCCCce--EEEe--CCCHH
Q 014244 230 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FS---TLYAPLIRDGRME--KFYW--APTRE 301 (428)
Q Consensus 230 ~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-~~---~Ld~ALlR~gRfd--~~i~--~P~~e 301 (428)
++ . .|.++++ . ....+.++|+|++. |. ...+.|+. ||. ..+. .|+.+
T Consensus 102 --~~-----~----~lf~l~n--------~----~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e 156 (226)
T PRK09087 102 --DE-----T----GLFHLIN--------S----VRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDA 156 (226)
T ss_pred --CH-----H----HHHHHHH--------H----HHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHH
Confidence 11 1 1333333 1 11123467777764 33 23566664 663 3344 99999
Q ss_pred HHHHHHHHhccCCC--CCHhHHHHHhcCCCh
Q 014244 302 DRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (428)
Q Consensus 302 eR~~Il~~~~~~~~--l~~~~la~lt~gfsg 330 (428)
+|.+|++.++...+ ++.+.+.-++..+++
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence 99999999987654 455555555555553
No 168
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.9e-08 Score=97.20 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=65.5
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe----CCCCCCChhhcC
Q 014244 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG----NDFSTLYAPLIR 287 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT----N~~~~Ld~ALlR 287 (428)
+..|+||||||+++.+.+.+ ...+..+-++.-|+-+....+... .|+.....++++|++. ..|+.|-|.|-
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g-~~dvSREGVQRDlLPlvEGstV~T---KyG~VkTdHILFIasGAFh~sKPSDLiPELQ- 324 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSG-GPDVSREGVQRDLLPLVEGSTVST---KYGPVKTDHILFIASGAFHVAKPSDLIPELQ- 324 (444)
T ss_pred hcCeEEEehhhHHHhcCCCC-CCCcchhhhcccccccccCceeec---cccccccceEEEEecCceecCChhhcChhhc-
Confidence 45699999999998876422 225666677777776766443322 3444677888999876 46889999886
Q ss_pred CCCceEEEe--CCCHHHHHHHH
Q 014244 288 DGRMEKFYW--APTREDRIGVC 307 (428)
Q Consensus 288 ~gRfd~~i~--~P~~eeR~~Il 307 (428)
|||-..++ ..+.++-..||
T Consensus 325 -GRfPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 325 -GRFPIRVELDALTKEDFERIL 345 (444)
T ss_pred -CCCceEEEcccCCHHHHHHHH
Confidence 89999988 77888888774
No 169
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.5e-08 Score=106.19 Aligned_cols=144 Identities=12% Similarity=0.141 Sum_probs=92.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe-cccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM-SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v-s~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
...+-..+||+||||+|||.||.-||...+.+|+.+ |+.++....-.+.-..|+..|+.| .+...+||++|||+.
T Consensus 534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA----YkS~lsiivvDdiEr 609 (744)
T KOG0741|consen 534 ERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDA----YKSPLSIIVVDDIER 609 (744)
T ss_pred ccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHh----hcCcceEEEEcchhh
Confidence 334447899999999999999999999999999984 444443211111223578899999 899999999999988
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh-hcCCCCceEEEeCCCH--
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTR-- 300 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A-LlR~gRfd~~i~~P~~-- 300 (428)
+..-.. -..+. .-++.|+|+-++.. . .-...+.+|++||.+.+-|-.- ++ ..|+..+..|+.
T Consensus 610 LiD~vp--IGPRf-SN~vlQaL~VllK~--------~--ppkg~kLli~~TTS~~~vL~~m~i~--~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 610 LLDYVP--IGPRF-SNLVLQALLVLLKK--------Q--PPKGRKLLIFGTTSRREVLQEMGIL--DCFSSTIHVPNLTT 674 (744)
T ss_pred hhcccc--cCchh-hHHHHHHHHHHhcc--------C--CCCCceEEEEecccHHHHHHHcCHH--HhhhheeecCccCc
Confidence 743321 00111 23455677666651 1 0123567888888876544332 23 256777776654
Q ss_pred -HHHHHHH
Q 014244 301 -EDRIGVC 307 (428)
Q Consensus 301 -eeR~~Il 307 (428)
++..+++
T Consensus 675 ~~~~~~vl 682 (744)
T KOG0741|consen 675 GEQLLEVL 682 (744)
T ss_pred hHHHHHHH
Confidence 4444444
No 170
>PRK04132 replication factor C small subunit; Provisional
Probab=98.83 E-value=2.6e-08 Score=111.25 Aligned_cols=139 Identities=16% Similarity=0.174 Sum_probs=98.8
Q ss_pred EEEc--CCCchHHHHHHHHHHHh-----CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHh--CCceEEEeccccc
Q 014244 153 GIWG--GKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--GKMCCLMINDLDA 223 (428)
Q Consensus 153 LL~G--pPGtGKT~LA~aIA~el-----g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~--~~p~ILfIDEiDa 223 (428)
+..| |++.|||++|+++|+++ +.+++.+++++-. +...||++...+...... .+..|+||||+|.
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADA 641 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECccc
Confidence 4568 99999999999999997 5689999998642 134566666554221111 1347999999998
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHHH
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 302 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~ee 302 (428)
+... .++.|+.+++ ++..++++|++||++..+.++++. ||..+-. .|+.++
T Consensus 642 Lt~~-------------AQnALLk~lE-------------ep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~~ 693 (846)
T PRK04132 642 LTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED 693 (846)
T ss_pred CCHH-------------HHHHHHHHhh-------------CCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHHH
Confidence 7321 2345555555 445678999999999999999886 7766666 888888
Q ss_pred HHHHHHHhccCCCC--CHhHHHHHh
Q 014244 303 RIGVCKGIFRNDNV--ADDDIVKLV 325 (428)
Q Consensus 303 R~~Il~~~~~~~~l--~~~~la~lt 325 (428)
...+++.++...++ +.+.+..++
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia 718 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAIL 718 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 88888888776554 444444444
No 171
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.82 E-value=2.6e-08 Score=102.99 Aligned_cols=191 Identities=20% Similarity=0.273 Sum_probs=114.0
Q ss_pred cccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCeEEeccccc
Q 014244 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGEL 185 (428)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg-----~~~i~vs~s~L 185 (428)
..|+|+|.+.+ +. .+.+..+++.....+|. .-.-++||||.|.|||+|++|++++.. ..+++++...+
T Consensus 82 ~~ytFdnFv~g----~~--N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f 154 (408)
T COG0593 82 PKYTFDNFVVG----PS--NRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF 154 (408)
T ss_pred CCCchhheeeC----Cc--hHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH
Confidence 45677775443 22 25566777777776765 334589999999999999999999952 34667777665
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 014244 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (428)
Q Consensus 186 ~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 265 (428)
...++-..-..--+-|++- - .-.+|+||||+.+.++.. .+ ..+..++..+.+
T Consensus 155 ~~~~v~a~~~~~~~~Fk~~-----y-~~dlllIDDiq~l~gk~~--~q-----eefFh~FN~l~~--------------- 206 (408)
T COG0593 155 TNDFVKALRDNEMEKFKEK-----Y-SLDLLLIDDIQFLAGKER--TQ-----EEFFHTFNALLE--------------- 206 (408)
T ss_pred HHHHHHHHHhhhHHHHHHh-----h-ccCeeeechHhHhcCChh--HH-----HHHHHHHHHHHh---------------
Confidence 5332211000000122222 2 456999999999887643 12 333434433333
Q ss_pred CCCceEEEEeCC-CCC---CChhhcCCCCceEEEe----CCCHHHHHHHHHHhccCCCC--CHhHHHHHhcCCChhhHHh
Q 014244 266 NPRVPIIVTGND-FST---LYAPLIRDGRMEKFYW----APTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 266 ~~~V~VI~TTN~-~~~---Ld~ALlR~gRfd~~i~----~P~~eeR~~Il~~~~~~~~l--~~~~la~lt~gfsgadL~~ 335 (428)
..+ -||.|+.+ |.. +.|.|.. ||..-+. .|+.+.|..|++......++ +.+.+.-++..++..--+.
T Consensus 207 ~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReL 283 (408)
T COG0593 207 NGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVREL 283 (408)
T ss_pred cCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHH
Confidence 122 56666654 443 4466765 6664333 99999999999997766554 4444555555555443334
Q ss_pred HHHH
Q 014244 336 FGAL 339 (428)
Q Consensus 336 ~~al 339 (428)
.++|
T Consensus 284 egaL 287 (408)
T COG0593 284 EGAL 287 (408)
T ss_pred HHHH
Confidence 4444
No 172
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.82 E-value=1.2e-08 Score=103.57 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=53.3
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-CCChhhcCCC
Q 014244 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDG 289 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~~-~Ld~ALlR~g 289 (428)
...+|||||++.+.. .+.+.|++.++... .+..+|.. .....++.+|+|+|..+ .++++|+.
T Consensus 128 ~~GiL~lDEInrl~~-------------~~q~~Lle~mee~~v~v~r~G~~-~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 128 NRGYLYIDEVNLLED-------------HIVDLLLDVAQSGENVVEREGLS-IRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred CCCeEEecChHhCCH-------------HHHHHHHHHHHcCCeEEEECCeE-EecCCCEEEEecCCcccCCCCHHHHh--
Confidence 346999999986432 23345556665222 12223331 12335778888888644 68999986
Q ss_pred CceEEEe--CC-CHHHHHHHHHHhc
Q 014244 290 RMEKFYW--AP-TREDRIGVCKGIF 311 (428)
Q Consensus 290 Rfd~~i~--~P-~~eeR~~Il~~~~ 311 (428)
||...+. .| +.++|.+|++...
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 8887777 44 4489999998754
No 173
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=8.5e-08 Score=96.60 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=103.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCe----------EEecccccc--cC---CCCC-------------------
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINP----------IMMSAGELE--SG---NAGE------------------- 192 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~----------i~vs~s~L~--s~---~~Ge------------------- 192 (428)
+.|..+||+||+|+||+++|.++|+.+-..- ...+.+++. .. ..|.
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQ 103 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccccc
Confidence 5688999999999999999999999953321 011111111 00 0011
Q ss_pred -hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 014244 193 -PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (428)
Q Consensus 193 -~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~V 271 (428)
....+|++-+.+...--.+...|++||++|.+... -...|+..+. ++. +..+
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~-------------aaNaLLK~LE-------------EPp-~~~f 156 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA-------------AANALLKTLE-------------EPG-NGTL 156 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-------------HHHHHHHHHh-------------CCC-CCeE
Confidence 11235555444311112456789999999875221 1234555555 333 5578
Q ss_pred EEEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCH--hHHHHHhcCCChhhHHhH
Q 014244 272 IVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVAD--DDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 272 I~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~--~~la~lt~gfsgadL~~~ 336 (428)
|.+|++++.|.|.++. |+..+-. .|+.++..+++......+..+. +.++.++.|=++..++..
T Consensus 157 ILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHHHH
Confidence 8888999999999886 7777666 8899999999887765444443 567888888777776644
No 174
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.81 E-value=3.7e-09 Score=98.05 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=59.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccccCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s~~~Ge~-~~~Ir~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
+...+++|+||||||||+||.+|+++ .|..+..++.++|.+...... .......+. +-....+|+|||+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~------~l~~~dlLilDDlG 118 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLK------RLKRVDLLILDDLG 118 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHH------HHHTSSCEEEETCT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcC------ccccccEecccccc
Confidence 34679999999999999999999988 478888888887754321110 000111122 12345799999995
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 278 (428)
.... +......|.++++ . ...+-++|+|||..
T Consensus 119 ~~~~-----------~~~~~~~l~~ii~--------~-----R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 119 YEPL-----------SEWEAELLFEIID--------E-----RYERKPTIITSNLS 150 (178)
T ss_dssp SS--------------HHHHHCTHHHHH--------H-----HHHT-EEEEEESS-
T ss_pred eeee-----------cccccccchhhhh--------H-----hhcccCeEeeCCCc
Confidence 4211 1223345566666 1 11234899999964
No 175
>PRK06526 transposase; Provisional
Probab=98.79 E-value=1.3e-08 Score=99.64 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=46.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
.+.+++|+||||||||+||.+|+.++ |..+...+..++.+...... ....+.. .+-.-..+.+|+|||++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~---~~~~~~~--~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH---HAGRLQA--ELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH---hcCcHHH--HHHHhccCCEEEEcccccC
Confidence 45689999999999999999999884 66666666665543221000 0000010 1112345789999999865
Q ss_pred c
Q 014244 225 A 225 (428)
Q Consensus 225 ~ 225 (428)
.
T Consensus 172 ~ 172 (254)
T PRK06526 172 P 172 (254)
T ss_pred C
Confidence 4
No 176
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.76 E-value=1.8e-08 Score=106.96 Aligned_cols=170 Identities=14% Similarity=0.232 Sum_probs=108.0
Q ss_pred HHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCe--EEeccc------ccccC-------C---CCC
Q 014244 131 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP--IMMSAG------ELESG-------N---AGE 192 (428)
Q Consensus 131 ~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~--i~vs~s------~L~s~-------~---~Ge 192 (428)
..+....+|.+... +.+.+.||.||-|||||++||.+|+.+++.- ..--+. ++..+ + -..
T Consensus 22 e~v~~~L~nal~~~--ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~ 99 (515)
T COG2812 22 EHVVKTLSNALENG--RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNT 99 (515)
T ss_pred HHHHHHHHHHHHhC--cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhcc
Confidence 33444455555433 5678999999999999999999999987752 111111 11111 0 011
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 014244 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (428)
Q Consensus 193 ~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 272 (428)
+...||++-+++.-.--.++.-|.+|||+..+... ..+ .|+.-+. ++..+|.+|
T Consensus 100 gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~------------afN-ALLKTLE-------------EPP~hV~FI 153 (515)
T COG2812 100 GVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ------------AFN-ALLKTLE-------------EPPSHVKFI 153 (515)
T ss_pred ChHHHHHHHHHhccCCccccceEEEEecHHhhhHH------------HHH-HHhcccc-------------cCccCeEEE
Confidence 34456666665511111566779999999765322 222 2322333 667889999
Q ss_pred EEeCCCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHhH--HHHHhcCCCh
Q 014244 273 VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDD--IVKLVDTFPG 330 (428)
Q Consensus 273 ~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~~--la~lt~gfsg 330 (428)
.+|-.+..+++-++. |+.++-+ .-+.++...-+..++..+++..++ +.-+.....|
T Consensus 154 lATTe~~Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 154 LATTEPQKIPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred EecCCcCcCchhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 999999999999886 7777777 667778888888888887766443 4444444444
No 177
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.4e-07 Score=95.30 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=102.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE-------------ecccccc-----cCCCCC------hHHHHHHHH
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-------------MSAGELE-----SGNAGE------PAKLIRQRY 201 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~-------------vs~s~L~-----s~~~Ge------~~~~Ir~~F 201 (428)
-+.|..+||+||+|+||+++|.++|+.+-+.-.. -+-+++. -...|. ....||++-
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 3678899999999999999999999986442100 0001110 001111 233455554
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 014244 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (428)
Q Consensus 202 ~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 281 (428)
+.+...-..+.-.|++||++|.+... -.+.|+..++ ++..++.+|.+|+.++.|
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLE-------------EPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINRA-------------ACNALLKTLE-------------EPSPGRYLWLISAQPARL 156 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCHH-------------HHHHHHHHhh-------------CCCCCCeEEEEECChhhC
Confidence 44411112345579999999876221 1234444555 666788999999999999
Q ss_pred ChhhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHh---HHHHHhcCCChhhHHhH
Q 014244 282 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 282 d~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~---~la~lt~gfsgadL~~~ 336 (428)
.|.++. |+..+-. .|+.++-.+.+... +++.. .++.++.|-++..+++.
T Consensus 157 LpTIrS--RCq~i~~~~~~~~~~~~~L~~~----~~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 157 PATIRS--RCQRLEFKLPPAHEALAWLLAQ----GVSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred chHHHh--hheEeeCCCcCHHHHHHHHHHc----CCChHHHHHHHHHcCCCHHHHHHHh
Confidence 999876 8877777 88888877777542 44444 46777788777766653
No 178
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=2.3e-07 Score=94.02 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=84.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------eEEecccccccCCCCC--hHHHHHH
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGE--PAKLIRQ 199 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~L~s~~~Ge--~~~~Ir~ 199 (428)
-+.|..+|||||+|+|||++|+++|+.+-.. +..+.. .|. ....||+
T Consensus 25 ~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~-------~~~~i~id~ir~ 97 (329)
T PRK08058 25 NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP-------DGQSIKKDQIRY 97 (329)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc-------ccccCCHHHHHH
Confidence 3578899999999999999999999996432 111111 111 1234555
Q ss_pred HHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 014244 200 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 279 (428)
Q Consensus 200 ~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~ 279 (428)
+-+.....-..+...|++|||+|.+... ....|+..++ ++...+.+|.+|+.+.
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~~~~~~-------------a~NaLLK~LE-------------EPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHADKMTAS-------------AANSLLKFLE-------------EPSGGTTAILLTENKH 151 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHhhhCHH-------------HHHHHHHHhc-------------CCCCCceEEEEeCChH
Confidence 4443310001345679999999765221 1234555555 4556778888999999
Q ss_pred CCChhhcCCCCceEEEe-CCCHHHHHHHHHH
Q 014244 280 TLYAPLIRDGRMEKFYW-APTREDRIGVCKG 309 (428)
Q Consensus 280 ~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~ 309 (428)
.|.|+++. |+..+.. .|+.++..++++.
T Consensus 152 ~ll~TIrS--Rc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 152 QILPTILS--RCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hCcHHHHh--hceeeeCCCCCHHHHHHHHHH
Confidence 99999876 6666666 7888887777754
No 179
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.74 E-value=5.2e-08 Score=95.36 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHH---HHHHHH-hCCceEEEecc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AADIIK-KGKMCCLMIND 220 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~---A~~~i~-~~~p~ILfIDE 220 (428)
.+.+++|+||||+|||+||-||++++ |+.++.++.+++.+ .++..|.. ...+.+ -....+|+|||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~--------~Lk~~~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS--------KLKAAFDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--------HHHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence 67899999999999999999999994 78888899888873 33333332 112233 45567999999
Q ss_pred cccc
Q 014244 221 LDAG 224 (428)
Q Consensus 221 iDa~ 224 (428)
|...
T Consensus 176 lG~~ 179 (254)
T COG1484 176 IGYE 179 (254)
T ss_pred ccCc
Confidence 9653
No 180
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=1.4e-07 Score=95.32 Aligned_cols=161 Identities=9% Similarity=0.068 Sum_probs=101.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE--e--------------ccccc--ccCCCCC--hHHHHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM--M--------------SAGEL--ESGNAGE--PAKLIRQRYREAAD 206 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~--v--------------s~s~L--~s~~~Ge--~~~~Ir~~F~~A~~ 206 (428)
+.|.++||+||+|+||+++|+++|+.+-+.--. - +-+++ .....|. ....||++-+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 578899999999999999999999996442100 0 01111 0000111 24456665554422
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhc
Q 014244 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALl 286 (428)
....+...|++||++|.+... -...|+..++ ++..++.+|.+|+.++.|.|.++
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~-------------AaNaLLKtLE-------------EPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEA-------------AANALLKTLE-------------EPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ccccCCceEEEEechhhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChHhCchHHH
Confidence 223566679999999876321 1234555555 66788899999999999999987
Q ss_pred CCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHhHHHHHhcCCChhhHHh
Q 014244 287 RDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDF 335 (428)
Q Consensus 287 R~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~~la~lt~gfsgadL~~ 335 (428)
. |+..+.. .|+.++..+.+........-....++.++.|-++..+++
T Consensus 156 S--RC~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~g~p~~A~~~ 203 (325)
T PRK06871 156 S--RCQTWLIHPPEEQQALDWLQAQSSAEISEILTALRINYGRPLLALTF 203 (325)
T ss_pred h--hceEEeCCCCCHHHHHHHHHHHhccChHHHHHHHHHcCCCHHHHHHH
Confidence 6 7777777 788888887776654222212233455566655555544
No 181
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=2.7e-07 Score=100.71 Aligned_cols=145 Identities=15% Similarity=0.096 Sum_probs=80.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE-ecccc-------------cccCC--CCChHHHHHHHHHHHHHHH-
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGE-------------LESGN--AGEPAKLIRQRYREAADII- 208 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~-vs~s~-------------L~s~~--~Ge~~~~Ir~~F~~A~~~i- 208 (428)
..+...++|+||||||||++++++|++++..++. .+... +.+.+ .-.....++.....+....
T Consensus 107 ~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~ 186 (637)
T TIGR00602 107 NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQ 186 (637)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhc
Confidence 3445679999999999999999999999876544 11110 00000 0111233334444442111
Q ss_pred -----HhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC---
Q 014244 209 -----KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST--- 280 (428)
Q Consensus 209 -----~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~--- 280 (428)
......||||||||.+..+. ++.+..+|.-.. ....++|+|+++|.-..
T Consensus 187 ~~g~~~~~~~~IILIDEiPn~~~r~---------~~~lq~lLr~~~--------------~e~~~~pLI~I~TE~~~~~~ 243 (637)
T TIGR00602 187 MLGDDLMTDKKIILVEDLPNQFYRD---------TRALHEILRWKY--------------VSIGRCPLVFIITESLEGDN 243 (637)
T ss_pred ccccccCCceeEEEeecchhhchhh---------HHHHHHHHHHHh--------------hcCCCceEEEEecCCccccc
Confidence 02457799999999765431 122232331011 12346778877763211
Q ss_pred ------------CChhhcCCCCceEEEe-CCCHHHHHHHHHHhccC
Q 014244 281 ------------LYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRN 313 (428)
Q Consensus 281 ------------Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~ 313 (428)
|.++++..-|+..+-+ ..+.....+.|+.++..
T Consensus 244 ~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 244 NQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred cccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHh
Confidence 3367875446655555 66777766666655543
No 182
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.70 E-value=2.2e-08 Score=108.84 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=90.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC--CeEEecccccccCCCCChHHHHHHHHHHH-----HHHHHhCCceEEEecccc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA-----ADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A-----~~~i~~~~p~ILfIDEiD 222 (428)
.+|||.|+||||||++|+++++.+.. +|+.+..+...+..+|.- .+...+... ...+......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 37999999999999999999998764 477776543444444431 011111100 001122344699999997
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCcc-ccCCCccccCCCCCceEEEEeCCCC---CCChhhcCCCCceEEEe--
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYW-- 296 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~-v~l~~~~~~~~~~~V~VI~TTN~~~---~Ld~ALlR~gRfd~~i~-- 296 (428)
.+.. .++..|++.++.-+. +.-.|.. .....+..||+|+|..+ .|+++|+. ||+.++.
T Consensus 95 rl~~-------------~~q~~Ll~al~~g~v~i~r~G~~-~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDD-------------GLSNRLLQALDEGVVIVEREGIS-VVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCH-------------HHHHHHHHHHHcCCeEEEECCCc-eeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 6532 233456666652211 1111221 11224678899999765 79999986 8888666
Q ss_pred -CCCHHHHHHHHHHhc
Q 014244 297 -APTREDRIGVCKGIF 311 (428)
Q Consensus 297 -~P~~eeR~~Il~~~~ 311 (428)
.|+.++|.+|++.++
T Consensus 159 ~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 159 DVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 788999999987765
No 183
>PRK09183 transposase/IS protein; Provisional
Probab=98.69 E-value=2.1e-08 Score=98.36 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=47.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccccCCCCC-hHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s~~~Ge-~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
+.....++|+||||||||+|+.+++.+ .|..+..++..++...+... ....+...+... ...+.+|+|||+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdl 173 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEI 173 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-----hcCCCEEEEccc
Confidence 344568999999999999999999776 46677777766555322100 000111222221 356789999999
Q ss_pred cccc
Q 014244 222 DAGA 225 (428)
Q Consensus 222 Da~~ 225 (428)
+...
T Consensus 174 g~~~ 177 (259)
T PRK09183 174 GYLP 177 (259)
T ss_pred ccCC
Confidence 7643
No 184
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.68 E-value=2.1e-08 Score=107.18 Aligned_cols=137 Identities=16% Similarity=0.180 Sum_probs=83.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe----cccccc-----cCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELE-----SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v----s~s~L~-----s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
.|||+|+||||||++|+++++......+.. ++..+. +...|+- .++. ..+......+|+|||+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~------~~~~--G~l~~A~~Gil~iDEi 309 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF------TLEG--GALVLADNGVCCIDEF 309 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE------EecC--ccEEecCCCEEEEech
Confidence 699999999999999999999875432221 111121 1111110 0000 0112334579999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCcc-ccCCCccccCCCCCceEEEEeCCCC-------------CCChhhcC
Q 014244 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 287 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~-v~l~~~~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR 287 (428)
|.+... ....|++.++..+. +.-.|.. .....+..||+|+|... .|+++++.
T Consensus 310 ~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~-~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs 375 (509)
T smart00350 310 DKMDDS-------------DRTAIHEAMEQQTISIAKAGIT-TTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS 375 (509)
T ss_pred hhCCHH-------------HHHHHHHHHhcCEEEEEeCCEE-EEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC
Confidence 986432 22445555542210 1112221 12236778999999653 69999997
Q ss_pred CCCceEEEe---CCCHHHHHHHHHHhc
Q 014244 288 DGRMEKFYW---APTREDRIGVCKGIF 311 (428)
Q Consensus 288 ~gRfd~~i~---~P~~eeR~~Il~~~~ 311 (428)
|||.++. .|+.+...+|++.++
T Consensus 376 --RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 376 --RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred --ceeeEEEecCCCChHHHHHHHHHHH
Confidence 9999877 899999999987754
No 185
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.67 E-value=1.5e-07 Score=95.93 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=53.6
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-CCChhhcC
Q 014244 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIR 287 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~~-~Ld~ALlR 287 (428)
.....+|||||++.+... ++..|++.++.-+ .+.-+|.. .....++++|+|.|-.+ .++++|+.
T Consensus 142 ~A~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~Lld 207 (350)
T CHL00081 142 KANRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD 207 (350)
T ss_pred ecCCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHH
Confidence 334579999999765332 2344556655211 11112321 12235777888888655 69999987
Q ss_pred CCCceEEEe--CCC-HHHHHHHHHHhc
Q 014244 288 DGRMEKFYW--APT-REDRIGVCKGIF 311 (428)
Q Consensus 288 ~gRfd~~i~--~P~-~eeR~~Il~~~~ 311 (428)
||...+. .|+ .+.+.+|++...
T Consensus 208 --Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 208 --RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred --HhCceeecCCCCChHHHHHHHHhhh
Confidence 8887776 565 699999998754
No 186
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.65 E-value=5.3e-08 Score=106.69 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=86.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh-----------------------------------CCCeEEecccccccCCCCChH
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKM-----------------------------------GINPIMMSAGELESGNAGEPA 194 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el-----------------------------------g~~~i~vs~s~L~s~~~Ge~~ 194 (428)
.+|||+||||||||++|+++++.+ ..+|+.+..+...+..+|.-.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 479999999999999999999987 235555554444433444310
Q ss_pred HHHHHHHHHH-----HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCC
Q 014244 195 KLIRQRYREA-----ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPR 268 (428)
Q Consensus 195 ~~Ir~~F~~A-----~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~ 268 (428)
+...+... ..++......|||||||+.+.. .+...|++.++... .+.-.|.. .....+
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------------~~q~~Ll~~le~g~~~v~r~g~~-~~~~~~ 169 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------------HLVDVLLDAAAMGVNRVEREGLS-VSHPAR 169 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------------HHHHHHHHHHhcCCEEEEECCce-eeecCC
Confidence 01111100 0122233456999999987532 22345556665322 22222321 122367
Q ss_pred ceEEEEeCCC-CCCChhhcCCCCceEEEe---CCCHHHHHHHHHHhc
Q 014244 269 VPIIVTGNDF-STLYAPLIRDGRMEKFYW---APTREDRIGVCKGIF 311 (428)
Q Consensus 269 V~VI~TTN~~-~~Ld~ALlR~gRfd~~i~---~P~~eeR~~Il~~~~ 311 (428)
+.+|+|+|.. ..|.++|+. ||+..+. ..+.+++.+|++...
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 8899999953 468889986 8887777 345677888876543
No 187
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.63 E-value=3.9e-08 Score=86.47 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=54.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEeccc-cccc-CCCCChHHHHHHHHHHHHHHH---H-hCCceEEEecccccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-ELES-GNAGEPAKLIRQRYREAADII---K-KGKMCCLMINDLDAG 224 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s-~L~s-~~~Ge~~~~Ir~~F~~A~~~i---~-~~~p~ILfIDEiDa~ 224 (428)
.|||+|+||+|||++|+++|+.+|..|..+... ++.- ...|.+ +|+...... + -.-..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~------v~~~~~~~f~~~~GPif~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP------VYDQETGEFEFRPGPIFTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE------EEETTTTEEEEEE-TT-SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee------eeccCCCeeEeecChhhhceeeecccccC
Confidence 389999999999999999999999999887653 3320 000110 011000000 0 011249999999643
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC-CCceEEEEeCCCC-----CCChhhcC
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVPIIVTGNDFS-----TLYAPLIR 287 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~-~~V~VI~TTN~~~-----~Ld~ALlR 287 (428)
.+ -+++.|++.+. ...|.++|. .... ....||+|-|..+ .|++|++-
T Consensus 75 pp-------------ktQsAlLeam~-Er~Vt~~g~--~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D 127 (131)
T PF07726_consen 75 PP-------------KTQSALLEAME-ERQVTIDGQ--TYPLPDPFFVIATQNPVEQEGTYPLPEAQLD 127 (131)
T ss_dssp -H-------------HHHHHHHHHHH-HSEEEETTE--EEE--SS-EEEEEE-TT--S------HHHHT
T ss_pred CH-------------HHHHHHHHHHH-cCeEEeCCE--EEECCCcEEEEEecCccccCceecCCHHHhc
Confidence 22 23455666654 122333332 1122 4468888999877 78888874
No 188
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.3e-07 Score=104.15 Aligned_cols=135 Identities=20% Similarity=0.252 Sum_probs=98.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh----------CCCeEEeccccccc--CCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~s--~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfI 218 (428)
.-+|.|+||+|||.++.-+|... +..++.+..+.|.. +|-|+-+..++.+.++. ++..+.||||
T Consensus 193 NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev----~~~~~vILFI 268 (786)
T COG0542 193 NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEV----EKSKNVILFI 268 (786)
T ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHH----hcCCCeEEEE
Confidence 44789999999999999999983 55677777777754 68899999999998887 7666999999
Q ss_pred cccccccCCCCCCc-ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-----CCCCChhhcCCCCce
Q 014244 219 NDLDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-----FSTLYAPLIRDGRME 292 (428)
Q Consensus 219 DEiDa~~~~r~~~~-~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-----~~~Ld~ALlR~gRfd 292 (428)
|||..+.+.-...+ ... ...++...| .+..+-+|++|.- .=.=|+||-| ||.
T Consensus 269 DEiHtiVGAG~~~G~a~D-AaNiLKPaL-------------------ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ 326 (786)
T COG0542 269 DEIHTIVGAGATEGGAMD-AANLLKPAL-------------------ARGELRCIGATTLDEYRKYIEKDAALER--RFQ 326 (786)
T ss_pred echhhhcCCCcccccccc-hhhhhHHHH-------------------hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc
Confidence 99999977643111 111 112222222 1244566776653 2356999999 999
Q ss_pred EEEe-CCCHHHHHHHHHHhc
Q 014244 293 KFYW-APTREDRIGVCKGIF 311 (428)
Q Consensus 293 ~~i~-~P~~eeR~~Il~~~~ 311 (428)
.+.. .|+.++-..|++.+-
T Consensus 327 ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 327 KVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred eeeCCCCCHHHHHHHHHHHH
Confidence 9888 999999999987664
No 189
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.7e-07 Score=95.24 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=102.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-eE---------------Eecccccc--cCCCC---ChHHHHHHHHHH
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PI---------------MMSAGELE--SGNAG---EPAKLIRQRYRE 203 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~-~i---------------~vs~s~L~--s~~~G---e~~~~Ir~~F~~ 203 (428)
..+.|..+||+||+|+||+++|.++|+.+-+. .- .-+-+++. ....+ -....||++-+.
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 34678999999999999999999999996431 00 00011110 00000 123456665554
Q ss_pred HHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh
Q 014244 204 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 283 (428)
Q Consensus 204 A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ 283 (428)
....-..+...|++||+.|++-.. -...|+..|+ ++..++.+|.+|+.++.|.|
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTDA-------------AANALLKTLE-------------EPPENTWFFLACREPARLLA 153 (334)
T ss_pred HhhccccCCceEEEEcchHhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhhChH
Confidence 422223566779999999876321 1234555555 66788899999999999999
Q ss_pred hhcCCCCceEEEe-CCCHHHHHHHHHHhccCCCCCHh---HHHHHhcCCChhhHHh
Q 014244 284 PLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDF 335 (428)
Q Consensus 284 ALlR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~~~---~la~lt~gfsgadL~~ 335 (428)
.++. |+..+.. .|+.++..+.+.... +++.+ .++.++.|=++..+++
T Consensus 154 TIrS--RCq~~~~~~~~~~~~~~~L~~~~---~~~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 154 TLRS--RCRLHYLAPPPEQYALTWLSREV---TMSQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHHh--ccccccCCCCCHHHHHHHHHHcc---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9886 6766655 777887777665432 34444 3566677766665554
No 190
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.61 E-value=4e-06 Score=81.32 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC-CeEE--eccc-----c----cccC----CCCCh-HHHHHHHHHHHHHHHHhC
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGI-NPIM--MSAG-----E----LESG----NAGEP-AKLIRQRYREAADIIKKG 211 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~-~~i~--vs~s-----~----L~s~----~~Ge~-~~~Ir~~F~~A~~~i~~~ 211 (428)
+..++|+||+|+|||++++.+++++.. .++. +... + +... ..+.. ...++.+..........+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 346889999999999999999999763 2221 1111 1 1111 11111 122233333332333567
Q ss_pred CceEEEecccccc
Q 014244 212 KMCCLMINDLDAG 224 (428)
Q Consensus 212 ~p~ILfIDEiDa~ 224 (428)
.+++|+|||++.+
T Consensus 123 ~~~vliiDe~~~l 135 (269)
T TIGR03015 123 KRALLVVDEAQNL 135 (269)
T ss_pred CCeEEEEECcccC
Confidence 8899999999875
No 191
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.60 E-value=1.4e-07 Score=86.72 Aligned_cols=133 Identities=18% Similarity=0.229 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHH---
Q 014244 131 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA--- 204 (428)
Q Consensus 131 ~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A--- 204 (428)
+.+.+.++.+.. .|.-|||+|++||||+++|++|-+.. +.+|+.++++.+-. +..-..+|...
T Consensus 9 ~~~~~~~~~~a~-----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~------~~~e~~LFG~~~~~ 77 (168)
T PF00158_consen 9 KRLREQAKRAAS-----SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE------ELLESELFGHEKGA 77 (168)
T ss_dssp HHHHHHHHHHTT-----STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H------HHHHHHHHEBCSSS
T ss_pred HHHHHHHHHHhC-----CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc------chhhhhhhcccccc
Confidence 334455555542 34679999999999999999999975 45899999987642 22223455421
Q ss_pred --------HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 014244 205 --------ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (428)
Q Consensus 205 --------~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN 276 (428)
..++.......||||||+.+... ++.-|+++++......+.+. .....++-||+|||
T Consensus 78 ~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 78 FTGARSDKKGLLEQANGGTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSD--KPVPVDVRIIASTS 142 (168)
T ss_dssp STTTSSEBEHHHHHTTTSEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSS--SEEE--EEEEEEES
T ss_pred ccccccccCCceeeccceEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccc--ccccccceEEeecC
Confidence 13444556779999999886433 33455666663322222211 12235788999998
Q ss_pred CCCCCChhhcCCCCce
Q 014244 277 DFSTLYAPLIRDGRME 292 (428)
Q Consensus 277 ~~~~Ld~ALlR~gRfd 292 (428)
.. |.. ++..|+|.
T Consensus 143 ~~--l~~-~v~~g~fr 155 (168)
T PF00158_consen 143 KD--LEE-LVEQGRFR 155 (168)
T ss_dssp S---HHH-HHHTTSS-
T ss_pred cC--HHH-HHHcCCCh
Confidence 63 222 34445553
No 192
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.59 E-value=1.4e-07 Score=96.01 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=54.7
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-CCChhhcC
Q 014244 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIR 287 (428)
Q Consensus 210 ~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~~-~Ld~ALlR 287 (428)
.....+|||||++.+.. .+++.|++.++... .+.-+|.. .....++.+|+|+|-.+ .|+++|+.
T Consensus 129 ~A~~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~g~~~v~r~G~~-~~~~~r~iviat~np~eg~l~~~Lld 194 (337)
T TIGR02030 129 RANRGILYIDEVNLLED-------------HLVDVLLDVAASGWNVVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD 194 (337)
T ss_pred eccCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEEECCEE-EEcCCCEEEEeccccccCCCCHHHHh
Confidence 34557999999987532 23455666665321 12223331 12235778888888554 79999997
Q ss_pred CCCceEEEe--CCC-HHHHHHHHHHhc
Q 014244 288 DGRMEKFYW--APT-REDRIGVCKGIF 311 (428)
Q Consensus 288 ~gRfd~~i~--~P~-~eeR~~Il~~~~ 311 (428)
||...+. .|. .++|.+|++...
T Consensus 195 --Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 195 --RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred --hcceEEECCCCCCHHHHHHHHHhhh
Confidence 7887776 454 488999998754
No 193
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.2e-06 Score=88.61 Aligned_cols=159 Identities=17% Similarity=0.212 Sum_probs=101.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE---------------ecccccc--cCC-CCC--hHHHHHHHHHHHH
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM---------------MSAGELE--SGN-AGE--PAKLIRQRYREAA 205 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~---------------vs~s~L~--s~~-~Ge--~~~~Ir~~F~~A~ 205 (428)
-+.|.++||+||.|+||+.+|+++|+.+-+.--. -+-+++. ... .|. ....||++-+.+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 3678899999999999999999999986432100 0011110 000 011 2344555544431
Q ss_pred HHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhh
Q 014244 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 285 (428)
Q Consensus 206 ~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~AL 285 (428)
.....+.-.|++||++|.+-.. -...|+..++ ++..++.+|.+|+.++.|.|.+
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNES-------------ASNALLKTLE-------------EPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred hCcccCCceEEEecchhhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhhChHHH
Confidence 1112455679999999876321 1234555555 6678889999999999999998
Q ss_pred cCCCCceEEEe-CCCHHHHHHHHHHhccCCCCC-HhHHHHHhcCCChhhHHhH
Q 014244 286 IRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSIDFF 336 (428)
Q Consensus 286 lR~gRfd~~i~-~P~~eeR~~Il~~~~~~~~l~-~~~la~lt~gfsgadL~~~ 336 (428)
+. |+..+.. .|+.++..+.+... +++ ...+.+++.|-++..+++.
T Consensus 156 ~S--RCq~~~~~~~~~~~~~~~L~~~----~~~~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 156 VS--RCQQWVVTPPSTAQAMQWLKGQ----GITVPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred Hh--cceeEeCCCCCHHHHHHHHHHc----CCchHHHHHHHcCCCHHHHHHHh
Confidence 76 7777666 88888888877543 222 3356677777777666653
No 194
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.57 E-value=3e-07 Score=97.07 Aligned_cols=140 Identities=12% Similarity=0.137 Sum_probs=71.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC--CeEEeccc-ccccCCCCCh-HHHH--HHHHHHHHHHHHhC---CceEEEec
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESGNAGEP-AKLI--RQRYREAADIIKKG---KMCCLMIN 219 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~s-~L~s~~~Ge~-~~~I--r~~F~~A~~~i~~~---~p~ILfID 219 (428)
...+||+||||||||++|++++...+. +|...... ..-+...|.. .... ...|... ..+ ...+||+|
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~----~~G~L~~A~lLfLD 114 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRL----TSGYLPEAEIVFLD 114 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhh----cCCccccccEEeec
Confidence 346999999999999999999998653 23322111 0111222321 1111 1222211 111 23499999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC---CChhhcCCCCceEEEe
Q 014244 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYW 296 (428)
Q Consensus 220 EiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~---Ld~ALlR~gRfd~~i~ 296 (428)
||.... ..+...|++.++.-. +..++. ....+..++++|||.... ..++++- ||-..+.
T Consensus 115 EI~ras-------------p~~QsaLLeam~Er~-~t~g~~--~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~ 176 (498)
T PRK13531 115 EIWKAG-------------PAILNTLLTAINERR-FRNGAH--EEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLW 176 (498)
T ss_pred ccccCC-------------HHHHHHHHHHHHhCe-EecCCe--EEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEE
Confidence 995321 233455666664221 111111 122333455666674321 2237774 7765566
Q ss_pred --CCC-HHHHHHHHHHh
Q 014244 297 --APT-REDRIGVCKGI 310 (428)
Q Consensus 297 --~P~-~eeR~~Il~~~ 310 (428)
.|+ .++-.+|+...
T Consensus 177 vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 177 LDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCCchHHHHHHHHcc
Confidence 454 35557777653
No 195
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.57 E-value=7.9e-07 Score=90.80 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=39.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC-------CeEEecc----cccccCCCCChHHHHHHHH
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSA----GELESGNAGEPAKLIRQRY 201 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~-------~~i~vs~----s~L~s~~~Ge~~~~Ir~~F 201 (428)
..+.++|+||||||||+||+++|+.++. +++.++. +.+.+...+--....|..|
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHH
Confidence 4588999999999999999999999987 7888887 4444443333334444444
No 196
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.56 E-value=1.7e-06 Score=83.44 Aligned_cols=149 Identities=13% Similarity=0.193 Sum_probs=95.1
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH-hC
Q 014244 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KG 211 (428)
Q Consensus 136 i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~-~~ 211 (428)
+.+|........+-..+||||..|||||+|++|+-++. |...+.|+..+|.. +-.+++.- + ..
T Consensus 72 L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~L----r~~~ 138 (287)
T COG2607 72 LVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVELL----RARP 138 (287)
T ss_pred HHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHH----hcCC
Confidence 34444433233456799999999999999999999885 56778888776641 22333332 4 56
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC----
Q 014244 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR---- 287 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR---- 287 (428)
..-|||+||+---.+ .+ .-..+. .+|+ |. ......+|++-+|+||-..|+.-+.-
T Consensus 139 ~kFIlFcDDLSFe~g----d~----~yK~LK----s~Le--------G~-ve~rP~NVl~YATSNRRHLl~e~~~dn~~~ 197 (287)
T COG2607 139 EKFILFCDDLSFEEG----DD----AYKALK----SALE--------GG-VEGRPANVLFYATSNRRHLLPEDMKDNEGS 197 (287)
T ss_pred ceEEEEecCCCCCCC----ch----HHHHHH----HHhc--------CC-cccCCCeEEEEEecCCcccccHhhhhCCCc
Confidence 678999999832111 11 112233 3334 32 22345789999999998877754321
Q ss_pred ----------------CCCceEEEe--CCCHHHHHHHHHHhccCCCCCH
Q 014244 288 ----------------DGRMEKFYW--APTREDRIGVCKGIFRNDNVAD 318 (428)
Q Consensus 288 ----------------~gRfd~~i~--~P~~eeR~~Il~~~~~~~~l~~ 318 (428)
..||-..+- .++.++=..|++.+.+..+++.
T Consensus 198 ~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 198 TGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 235555444 7788888888888887766654
No 197
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=3.4e-07 Score=92.69 Aligned_cols=134 Identities=14% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------------------eEEecccccccCCCC-----ChHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAG-----EPAKL 196 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~-------------------------~i~vs~s~L~s~~~G-----e~~~~ 196 (428)
+.|..+||+||+|+|||++|+.+|+.+.+. ++.+++..- .+..| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 789999999999999999999999996431 222322100 00011 12455
Q ss_pred HHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 014244 197 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (428)
Q Consensus 197 Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN 276 (428)
||++.+.+...-..+...|++||+++.+... ....|+..++ +...++.+|++|+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LE-------------ep~~~~~~Ilvth 151 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLE-------------EPPPQVVFLLVSH 151 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHH-------------hCcCCCEEEEEeC
Confidence 7776665522112456679999999875322 1223444444 2224467888999
Q ss_pred CCCCCChhhcCCCCceEEEe-CCCHHHHHHHHHH
Q 014244 277 DFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKG 309 (428)
Q Consensus 277 ~~~~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~ 309 (428)
+++.+.+.+.+ |+-.+.. .|+.++..+.+..
T Consensus 152 ~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 152 AADKVLPTIKS--RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ChHhChHHHHH--HhhhhcCCCCCHHHHHHHHHh
Confidence 99999999876 6666555 7788887777654
No 198
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.47 E-value=1.3e-06 Score=79.79 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=73.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------eEEecccccccCCCCChHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYRE 203 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~-----------------------~i~vs~s~L~s~~~Ge~~~~Ir~~F~~ 203 (428)
+.|..+||+||+|+||+++|.++|+.+-.. ++.++...-. .. -....+|.+...
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~-~~--i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK-KS--IKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-SS--BSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-ch--hhHHHHHHHHHH
Confidence 678999999999999999999999995332 2222221110 00 123455555554
Q ss_pred HHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh
Q 014244 204 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 283 (428)
Q Consensus 204 A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ 283 (428)
.......+..-|++|||+|.+.. .....|+..|+ ++..++.+|.+|+.++.|.|
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE-------------epp~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE-------------EPPENTYFILITNNPSKILP 147 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH-------------STTTTEEEEEEES-GGGS-H
T ss_pred HHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc-------------CCCCCEEEEEEECChHHChH
Confidence 41111245677999999987532 22344555555 56678899999999999999
Q ss_pred hhcCCCCceEEE
Q 014244 284 PLIRDGRMEKFY 295 (428)
Q Consensus 284 ALlR~gRfd~~i 295 (428)
.++. |+-.+-
T Consensus 148 TI~S--Rc~~i~ 157 (162)
T PF13177_consen 148 TIRS--RCQVIR 157 (162)
T ss_dssp HHHT--TSEEEE
T ss_pred HHHh--hceEEe
Confidence 9986 665543
No 199
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.45 E-value=4.5e-07 Score=76.96 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=54.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCC
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT 231 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~ 231 (428)
|.||||||||||++|+.+|+.+.-.+-.-....+.....+. +.+. . -.++ .|+++||+.......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~------~~w~-g----Y~~q-~vvi~DD~~~~~~~~--- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD------KFWD-G----YQGQ-PVVIIDDFGQDNDGY--- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc------chhh-c----cCCC-cEEEEeecCcccccc---
Confidence 57999999999999999998865332111111111111110 1111 1 1333 589999996543210
Q ss_pred cccchhhHHHHHHHHHhhcC-CccccCCCcccc-CCCCCceEEEEeCC
Q 014244 232 TQYTVNNQMVNATLMNIADN-PTCVQLPGMYNK-EENPRVPIIVTGND 277 (428)
Q Consensus 232 ~~~~~~~~~v~~~L~~lld~-~~~v~l~~~~~~-~~~~~V~VI~TTN~ 277 (428)
... ....+++++++ |..+.+.+...+ .......||+|||.
T Consensus 66 -----~~~-~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 66 -----NYS-DESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred -----chH-HHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 111 23345555553 344444433221 22345689999984
No 200
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.42 E-value=2.9e-06 Score=90.86 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=36.4
Q ss_pred HHHHhhh--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 136 ITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 136 i~K~~l~--~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
.++.++. ..+....+.|||+||||||||++++++|+++|..+....
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 3556664 234445679999999999999999999999999888743
No 201
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.39 E-value=9.2e-07 Score=89.68 Aligned_cols=133 Identities=15% Similarity=0.178 Sum_probs=79.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~-----------~~i~~~~p~ 214 (428)
...|||+|++||||+++|++|.... +.+|+.++++.+-... .-..+|.... ..+......
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~------l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG 95 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENL------LDSELFGHEAGAFTGAQKRHQGRFERADGG 95 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHH------HHHHHhccccccccCcccccCCchhhCCCC
Confidence 4569999999999999999998764 3589999988654211 1122332210 112334567
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhcC
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALlR 287 (428)
.|||||||.+... ++.-|+.++++.....+.+. .....++-||+|||.. ..+.+.|..
T Consensus 96 tL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~ 160 (329)
T TIGR02974 96 TLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCATNADLPALAAEGRFRADLLD 160 (329)
T ss_pred EEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCC--ceeccceEEEEechhhHHHHhhcCchHHHHHH
Confidence 9999999876432 23445555553221111111 1223567899999863 244455553
Q ss_pred CCCceE-EEeCCCHHHHH
Q 014244 288 DGRMEK-FYWAPTREDRI 304 (428)
Q Consensus 288 ~gRfd~-~i~~P~~eeR~ 304 (428)
|+.. .+.+|...+|.
T Consensus 161 --rl~~~~i~lPpLReR~ 176 (329)
T TIGR02974 161 --RLAFDVITLPPLRERQ 176 (329)
T ss_pred --HhcchhcCCCchhhhh
Confidence 5543 34488887773
No 202
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.35 E-value=7.4e-07 Score=91.50 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=28.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
+...+|+||.||||+|+|||+|.-+.++.+..
T Consensus 57 ~~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 57 PPPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred ccCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 34568999999999999999999999998765
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=1.3e-06 Score=75.08 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=45.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh--------CCCeEEecccccccC------------CCCChHHHHHHHHHHHHHHH
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM--------GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADII 208 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el--------g~~~i~vs~s~L~s~------------~~Ge~~~~Ir~~F~~A~~~i 208 (428)
.+.++++||||+|||++++.+++.+ ..+++.+..+...+. ...........+++...+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999997 677777665433210 00000001112223333334
Q ss_pred HhCCceEEEeccccccc
Q 014244 209 KKGKMCCLMINDLDAGA 225 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~ 225 (428)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 66666799999999864
No 204
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.32 E-value=2e-06 Score=87.05 Aligned_cols=133 Identities=15% Similarity=0.186 Sum_probs=78.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHH-----------HHHHHhCCce
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A-----------~~~i~~~~p~ 214 (428)
+..|||+|++||||+++|++|.... +.+|+.+++..+... ..-..+|... ...+......
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~------~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gG 102 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERADGG 102 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH------HHHHHHccccccccCCcccccCCchhccCCC
Confidence 4569999999999999999998774 358999998876311 1111223211 0112334567
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhcC
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALlR 287 (428)
.|||||||.+... ++..|+++++........+. .....++.||+||+.. ..+.+.|..
T Consensus 103 tL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~ 167 (326)
T PRK11608 103 TLFLDELATAPML-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167 (326)
T ss_pred eEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhHHHHHHcCCchHHHHH
Confidence 8999999876432 23445555552211111111 1112457889988763 345566664
Q ss_pred CCCce-EEEeCCCHHHHH
Q 014244 288 DGRME-KFYWAPTREDRI 304 (428)
Q Consensus 288 ~gRfd-~~i~~P~~eeR~ 304 (428)
||. ..+.+|...+|.
T Consensus 168 --~l~~~~i~lPpLReR~ 183 (326)
T PRK11608 168 --RLAFDVVQLPPLRERQ 183 (326)
T ss_pred --hcCCCEEECCChhhhh
Confidence 663 345588887773
No 205
>PHA00729 NTP-binding motif containing protein
Probab=98.30 E-value=1.3e-06 Score=83.90 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=24.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
..++|+|+||||||+||.+|+++++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 489999999999999999999998643
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.29 E-value=5.1e-06 Score=73.03 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=61.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccccc----------------------CCCCChHHHHHHHHHHHHH
Q 014244 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----------------------GNAGEPAKLIRQRYREAAD 206 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s----------------------~~~Ge~~~~Ir~~F~~A~~ 206 (428)
++|+||||+|||+++..++... +.+.+.++...... .+..... .......+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPA--AARLLSKAER 79 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCc--HHHHHHHHHH
Confidence 6899999999999999999886 44555554432211 1111110 1111111222
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014244 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
......|.+|+|||+..+....... .......+...+.+++. . ....++.+|++++......
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~--~~~~~~~~~~~l~~l~~---------~---~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREI--REGYPGELDEELRELLE---------R---ARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHH--HhcCChHHHHHHHHHHH---------H---HhcCCceEEEEEecCCccc
Confidence 3357889999999998775432100 00011222333333333 1 1124678888887766443
No 207
>PF13173 AAA_14: AAA domain
Probab=98.28 E-value=4.9e-06 Score=72.46 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=44.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC--CCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg--~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
+.++|+||.|||||++++.+++++. -+++.++..+......-... +.+.|.+. ....+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLEL----IKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHh----hccCCcEEEEehhhhh
Confidence 5789999999999999999999876 67777776644321000000 11111111 1236789999999665
No 208
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.27 E-value=2.3e-06 Score=92.03 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=75.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 213 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~-----------~~i~~~~p 213 (428)
....|||+|++|||||++|++|.... +.+|+.+++..+-.. ..-..+|.... ..+.....
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 291 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET------LLESELFGHEKGAFTGAIAQRKGRFELADG 291 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH------HHHHHHcCCCCCccCCCCcCCCCcccccCC
Confidence 34569999999999999999999884 468999999876321 11112332110 01123346
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------CCChhhc
Q 014244 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------TLYAPLI 286 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------~Ld~ALl 286 (428)
..|||||||.+... ++..|++++++.......+. .....++-+|+|||..- .+.+.|.
T Consensus 292 GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~ 356 (534)
T TIGR01817 292 GTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRDLEEAVAKGEFRADLY 356 (534)
T ss_pred CeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCCHHHHHHcCCCCHHHH
Confidence 79999999876432 33445556652221111111 01123577899887641 2223332
Q ss_pred CCCCceE-EEeCCCHHHH
Q 014244 287 RDGRMEK-FYWAPTREDR 303 (428)
Q Consensus 287 R~gRfd~-~i~~P~~eeR 303 (428)
. |+.. .+.+|...+|
T Consensus 357 ~--rl~~~~i~lPpLreR 372 (534)
T TIGR01817 357 Y--RINVVPIFLPPLRER 372 (534)
T ss_pred H--HhcCCeeeCCCcccc
Confidence 2 3333 3447777666
No 209
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.26 E-value=7.8e-06 Score=87.81 Aligned_cols=186 Identities=15% Similarity=0.218 Sum_probs=99.0
Q ss_pred cccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCC
Q 014244 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN 189 (428)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~ 189 (428)
++|++++|. ++.+ +.+.+.++.+.. ...-|||+|++||||+++|++|-... ..+|+.++++.+-+.
T Consensus 201 ~~f~~~ig~---s~~~--~~~~~~~~~~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~- 269 (520)
T PRK10820 201 SAFSQIVAV---SPKM--RQVVEQARKLAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD- 269 (520)
T ss_pred ccccceeEC---CHHH--HHHHHHHHHHhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH-
Confidence 456666664 2322 334444454432 23349999999999999999987664 357899998876421
Q ss_pred CCChHHHHHHHHHHH-----------HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC
Q 014244 190 AGEPAKLIRQRYREA-----------ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 258 (428)
Q Consensus 190 ~Ge~~~~Ir~~F~~A-----------~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~ 258 (428)
..-..+|..+ ..++.......|||||||.+... ++.-|++++++.+.....
T Consensus 270 -----~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 270 -----VVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred -----HHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCC
Confidence 1111223211 01122334678999999876432 224455555532211111
Q ss_pred CccccCCCCCceEEEEeCCC-------CCCChhhcCCCCceEE-EeCCCHHHHH-HH---HHHhc----cC-----CCCC
Q 014244 259 GMYNKEENPRVPIIVTGNDF-------STLYAPLIRDGRMEKF-YWAPTREDRI-GV---CKGIF----RN-----DNVA 317 (428)
Q Consensus 259 ~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALlR~gRfd~~-i~~P~~eeR~-~I---l~~~~----~~-----~~l~ 317 (428)
+. .....++-||+||+.. ..+.+.|.. |+... +.+|...+|. +| ++.++ .. ..++
T Consensus 332 ~~--~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 332 ED--HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CC--cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 11 1122456789988764 223444443 44433 3388877775 44 22222 11 1455
Q ss_pred HhHHHHHhcC-CChh
Q 014244 318 DDDIVKLVDT-FPGQ 331 (428)
Q Consensus 318 ~~~la~lt~g-fsga 331 (428)
.+.+..+..- |+|-
T Consensus 408 ~~a~~~L~~y~WPGN 422 (520)
T PRK10820 408 ADLNTVLTRYGWPGN 422 (520)
T ss_pred HHHHHHHhcCCCCCH
Confidence 6666666544 6653
No 210
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.24 E-value=7.2e-07 Score=88.16 Aligned_cols=152 Identities=14% Similarity=0.202 Sum_probs=82.5
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCe-E--EecccccccCCCCChHHHHHHHHHHHHH----
Q 014244 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-I--MMSAGELESGNAGEPAKLIRQRYREAAD---- 206 (428)
Q Consensus 134 ~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~-i--~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~---- 206 (428)
.++.+.++. ..+.+||.||+|||||.+++..-.++.-.- + .++.+.. .+...+....+...+
T Consensus 23 ~~ll~~l~~-----~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~ 91 (272)
T PF12775_consen 23 SYLLDLLLS-----NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHH-----CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTT
T ss_pred HHHHHHHHH-----cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCC
Confidence 344444443 245799999999999999998776654332 2 2222211 112222221111000
Q ss_pred -HH--HhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC-----CCCCceEEEEeCCC
Q 014244 207 -II--KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDF 278 (428)
Q Consensus 207 -~i--~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~-----~~~~V~VI~TTN~~ 278 (428)
.. ..++.+|+||||+..-..+.. ++ +...++|.+++|. .|.|... ...++-+|+++|..
T Consensus 92 ~~~gP~~~k~lv~fiDDlN~p~~d~y-gt------q~~iElLRQ~i~~------~g~yd~~~~~~~~i~~i~~vaa~~p~ 158 (272)
T PF12775_consen 92 RVYGPPGGKKLVLFIDDLNMPQPDKY-GT------QPPIELLRQLIDY------GGFYDRKKLEWKSIEDIQFVAAMNPT 158 (272)
T ss_dssp EEEEEESSSEEEEEEETTT-S---TT-S--------HHHHHHHHHHHC------SEEECTTTTEEEEECSEEEEEEESST
T ss_pred CCCCCCCCcEEEEEecccCCCCCCCC-CC------cCHHHHHHHHHHh------cCcccCCCcEEEEEeeeEEEEecCCC
Confidence 00 145677999999975444332 12 2334566666662 3444432 23678889998853
Q ss_pred C---CCChhhcCCCCceEEEe-CCCHHHHHHHHHHhc
Q 014244 279 S---TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIF 311 (428)
Q Consensus 279 ~---~Ld~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~ 311 (428)
. .|++.|+| .|-.... .|+.+....|...++
T Consensus 159 ~Gr~~is~R~~r--~f~i~~~~~p~~~sl~~If~~il 193 (272)
T PF12775_consen 159 GGRNPISPRFLR--HFNILNIPYPSDESLNTIFSSIL 193 (272)
T ss_dssp TT--SHHHHHHT--TEEEEE----TCCHHHHHHHHHH
T ss_pred CCCCCCChHHhh--heEEEEecCCChHHHHHHHHHHH
Confidence 2 47888887 5555444 899999888865554
No 211
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.24 E-value=1e-06 Score=89.87 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=44.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC--CCeEEecccccccCCCCChHHHHHHHHHHH
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA 204 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg--~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A 204 (428)
..+++||.||||||||.||-+||+++| +||+.++++++.+.-+-.++- +.+.|++|
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~-L~qa~Rra 106 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEA-LTQAFRRA 106 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHH-HHHHHHCS
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHH-HHHHHHHh
Confidence 357999999999999999999999998 799999999999988877764 44667765
No 212
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.22 E-value=3.9e-06 Score=80.76 Aligned_cols=141 Identities=15% Similarity=0.250 Sum_probs=80.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh-CC----CeEEecccccccCCCCChHHHHH---HHHHHHHHHHHhCCceEEEecccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKM-GI----NPIMMSAGELESGNAGEPAKLIR---QRYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el-g~----~~i~vs~s~L~s~~~Ge~~~~Ir---~~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
.++|.||||||||+-+.++|.++ |- .++.+++|+=. ....+| ..|..-.-.+..++..|+++||.|
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEAD 123 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEAD 123 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccc
Confidence 68899999999999999999994 42 24556665322 122333 345444112224677799999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHH
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 301 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~e 301 (428)
++... .| |.+..+. ++.. ...-++.++|..+.|-+|+-. |+-..-+ .-+.+
T Consensus 124 SMT~g----AQ-----QAlRRtM-EiyS----------------~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~ 175 (333)
T KOG0991|consen 124 SMTAG----AQ-----QALRRTM-EIYS----------------NTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQ 175 (333)
T ss_pred hhhhH----HH-----HHHHHHH-HHHc----------------ccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHH
Confidence 86421 11 3333222 2222 222477889999999888765 5444434 34444
Q ss_pred HHHHHHHHhccCCCCC--HhHHHHHh
Q 014244 302 DRIGVCKGIFRNDNVA--DDDIVKLV 325 (428)
Q Consensus 302 eR~~Il~~~~~~~~l~--~~~la~lt 325 (428)
+.+.-+..+.+.+++. .+.++.+.
T Consensus 176 qiL~Rl~~v~k~Ekv~yt~dgLeaii 201 (333)
T KOG0991|consen 176 QILKRLLEVAKAEKVNYTDDGLEAII 201 (333)
T ss_pred HHHHHHHHHHHHhCCCCCcchHHHhh
Confidence 4444444444444333 33344433
No 213
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.21 E-value=4.5e-06 Score=91.56 Aligned_cols=132 Identities=13% Similarity=0.108 Sum_probs=76.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC---CCeEEecccccccCCCCChHHHHHHHHHHH--------HHHHHhCCceEEE
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA--------ADIIKKGKMCCLM 217 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A--------~~~i~~~~p~ILf 217 (428)
..-|||+|++||||+++|++|.+... .+|+.+++..+-. +..-.++|... ...+.......||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~------~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD------EALAEEFLGSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh------HHHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence 33499999999999999999998753 5899999876631 11112233311 0011233567999
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCc------
Q 014244 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM------ 291 (428)
Q Consensus 218 IDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf------ 291 (428)
||||+.+... ++..|+.++++.....+.+. .....++-||+|||..- ..+...|+|
T Consensus 422 ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 422 LEKVEYLSPE-------------LQSALLQVLKTGVITRLDSR--RLIPVDVRVIATTTADL---AMLVEQNRFSRQLYY 483 (638)
T ss_pred EcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEeccCCH---HHHHhcCCChHHHhh
Confidence 9999876432 23445556653222111111 01113567999998642 223333444
Q ss_pred ---eEEEeCCCHHHHH
Q 014244 292 ---EKFYWAPTREDRI 304 (428)
Q Consensus 292 ---d~~i~~P~~eeR~ 304 (428)
...+.+|...+|.
T Consensus 484 ~l~~~~i~lPpLreR~ 499 (638)
T PRK11388 484 ALHAFEITIPPLRMRR 499 (638)
T ss_pred hhceeEEeCCChhhhh
Confidence 2334488888883
No 214
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.20 E-value=9.7e-06 Score=87.82 Aligned_cols=136 Identities=21% Similarity=0.292 Sum_probs=92.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC----------CCeEEecccccccC----------CCCCh------HHHHHHHHHHH
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELESG----------NAGEP------AKLIRQRYREA 204 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg----------~~~i~vs~s~L~s~----------~~Ge~------~~~Ir~~F~~A 204 (428)
.+.+.|-||||||.+++.+-+++. ..++.+++-.|.+. +-|+. -..++..|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 688899999999999999998753 35677777666432 22332 12233333321
Q ss_pred HHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh
Q 014244 205 ADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 283 (428)
Q Consensus 205 ~~~i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ 283 (428)
+ ...+|||+|||+|.+..+.. ..|+|++| |-..+..++.||+.+|..+ |+.
T Consensus 504 ----k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fd----------Wpt~~~sKLvvi~IaNTmd-lPE 555 (767)
T KOG1514|consen 504 ----KPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFD----------WPTLKNSKLVVIAIANTMD-LPE 555 (767)
T ss_pred ----CCCCCCEEEEeccHHHHhcccH-------------HHHHHHhc----------CCcCCCCceEEEEeccccc-CHH
Confidence 2 56789999999999987742 45667766 5556778889999998876 444
Q ss_pred hhcC---CCC--ceEEEe-CCCHHHHHHHHHHhccCC
Q 014244 284 PLIR---DGR--MEKFYW-APTREDRIGVCKGIFRND 314 (428)
Q Consensus 284 ALlR---~gR--fd~~i~-~P~~eeR~~Il~~~~~~~ 314 (428)
.++- ..| +.+..+ ..+.++..+|+..-+...
T Consensus 556 r~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 556 RLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred HHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 4431 112 234444 889999999988877664
No 215
>PF05729 NACHT: NACHT domain
Probab=98.18 E-value=2.5e-05 Score=69.13 Aligned_cols=144 Identities=21% Similarity=0.250 Sum_probs=74.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC---------CeEEecccccccCC-CCChHHHHHHHHHH--------HHHHHHhCC
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGN-AGEPAKLIRQRYRE--------AADIIKKGK 212 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~---------~~i~vs~s~L~s~~-~Ge~~~~Ir~~F~~--------A~~~i~~~~ 212 (428)
-++|+|+||+|||++++.++..+.. -++.....+..... ...-...+...+.. ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 5899999999999999999988421 12223333222110 00111111111111 112334677
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCce
Q 014244 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (428)
Q Consensus 213 p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd 292 (428)
+.+|+||.+|.+...... .........+.+++. . ....++.+|+|++. ...+. +.+...-.
T Consensus 82 ~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~--------~----~~~~~~~liit~r~-~~~~~-~~~~~~~~ 142 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP--------Q----ALPPGVKLIITSRP-RAFPD-LRRRLKQA 142 (166)
T ss_pred ceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh--------h----ccCCCCeEEEEEcC-ChHHH-HHHhcCCC
Confidence 889999999988764321 011122223333333 1 12355677777753 33322 22211111
Q ss_pred EEEe--CCCHHHHHHHHHHhccC
Q 014244 293 KFYW--APTREDRIGVCKGIFRN 313 (428)
Q Consensus 293 ~~i~--~P~~eeR~~Il~~~~~~ 313 (428)
..+. .-+.+++.++++.++..
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhhc
Confidence 2333 55888888888888753
No 216
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.18 E-value=3.3e-06 Score=90.11 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
...++|.||||||||+++++++..
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~l 234 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGI 234 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcc
Confidence 457999999999999999999875
No 217
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.13 E-value=4.3e-06 Score=93.98 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=102.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCC-------hHHHHHHHH---HHHHHHHHhCCceEEEecc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-------PAKLIRQRY---REAADIIKKGKMCCLMIND 220 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge-------~~~~Ir~~F---~~A~~~i~~~~p~ILfIDE 220 (428)
.+|++||||+|||+.++++|.++|..++..+++...+++... ....|..-| ... .......-||++||
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~--~~~~~~~~vil~de 436 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNR--QSLNSDHFLILMDE 436 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccc--cccccceeEEEEec
Confidence 479999999999999999999999999999999887664322 111122222 111 00122334999999
Q ss_pred cccccC-CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh-hhcCCCCceEEEeCC
Q 014244 221 LDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAP 298 (428)
Q Consensus 221 iDa~~~-~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~-ALlR~gRfd~~i~~P 298 (428)
+|.+.. .|+ .-..+.+.. ....+|||+|+|+.+.... ++.|.+ +|..+..|
T Consensus 437 vD~~~~~dRg-------~v~~l~~l~-------------------~ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP 489 (871)
T KOG1968|consen 437 VDGMFGEDRG-------GVSKLSSLC-------------------KKSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKP 489 (871)
T ss_pred cccccchhhh-------hHHHHHHHH-------------------HhccCCeEEEecCCCCccccchhhhc-ceeeecCC
Confidence 998766 222 112222222 1356799999999887766 455433 77777799
Q ss_pred CHHHHHHHHHHhccCC--CCCHhHHHHHhcCCChhhHH
Q 014244 299 TREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID 334 (428)
Q Consensus 299 ~~eeR~~Il~~~~~~~--~l~~~~la~lt~gfsgadL~ 334 (428)
+.+.+..-+..++..+ .++.+.+.+++... |+||.
T Consensus 490 ~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~-~~DiR 526 (871)
T KOG1968|consen 490 SSELIRSRIMSICKSEGIKISDDVLEEISKLS-GGDIR 526 (871)
T ss_pred cHHHHHhhhhhhhcccceecCcHHHHHHHHhc-ccCHH
Confidence 9999877777776554 46666677776654 66664
No 218
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.13 E-value=3.1e-06 Score=90.57 Aligned_cols=134 Identities=15% Similarity=0.164 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 213 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~-----------~~i~~~~p 213 (428)
.+..|||+|++||||+++|++|.... +.+|+.+++..+-+.. .-..+|.... ..+.....
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~------~e~~lfG~~~g~~~ga~~~~~g~~~~a~g 282 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL------AESELFGHVKGAFTGAISNRSGKFELADG 282 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH------HHHHhcCccccccCCCcccCCcchhhcCC
Confidence 35579999999999999999999884 4689999988764211 1112232110 01123346
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------CCChhhc
Q 014244 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------TLYAPLI 286 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------~Ld~ALl 286 (428)
..|||||||.+... ++.-|++++++.....+.+. .....++-||+|||..- .+.+.|.
T Consensus 283 GtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~ 347 (509)
T PRK05022 283 GTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATNRDLREEVRAGRFRADLY 347 (509)
T ss_pred CEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCC--cceecceEEEEecCCCHHHHHHcCCccHHHH
Confidence 78999999986432 22344555553221111111 12234678999998742 2333333
Q ss_pred CCCCceEE-EeCCCHHHHH
Q 014244 287 RDGRMEKF-YWAPTREDRI 304 (428)
Q Consensus 287 R~gRfd~~-i~~P~~eeR~ 304 (428)
. |+..+ |.+|...+|.
T Consensus 348 ~--rl~~~~i~lPpLreR~ 364 (509)
T PRK05022 348 H--RLSVFPLSVPPLRERG 364 (509)
T ss_pred h--cccccEeeCCCchhch
Confidence 2 33333 4488877773
No 219
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.12 E-value=1.1e-05 Score=86.59 Aligned_cols=135 Identities=13% Similarity=0.186 Sum_probs=75.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHH------------HHHHHhCCc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA------------ADIIKKGKM 213 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A------------~~~i~~~~p 213 (428)
+..|||+|++||||+++|++|.+.. +.+|+.++++.+-... +-..+|... ..++.....
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l------leseLFG~~~gaftga~~~~~~Gl~e~A~g 308 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL------LEAELFGYEEGAFTGARRGGRTGLIEAAHR 308 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH------HHHHhcCCcccccccccccccccchhhcCC
Confidence 4579999999999999999998774 5689999988764211 111233210 011122345
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--CCChhhcCC---
Q 014244 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRD--- 288 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~--~Ld~ALlR~--- 288 (428)
..||||||+.+... ++.-|+.++.+.....+.+. .....++-||+|||..- .+.....|.
T Consensus 309 GTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~~--~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~ 373 (526)
T TIGR02329 309 GTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGGT--EPVPVDVRVVAATHCALTTAVQQGRFRRDLF 373 (526)
T ss_pred ceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCCC--ceeeecceEEeccCCCHHHHhhhcchhHHHH
Confidence 68999999876432 23445555553222122111 11124567899887642 122211211
Q ss_pred CCce-EEEeCCCHHHHH
Q 014244 289 GRME-KFYWAPTREDRI 304 (428)
Q Consensus 289 gRfd-~~i~~P~~eeR~ 304 (428)
.|+. ..+.+|...+|.
T Consensus 374 ~rL~~~~I~lPPLReR~ 390 (526)
T TIGR02329 374 YRLSILRIALPPLRERP 390 (526)
T ss_pred HhcCCcEEeCCCchhch
Confidence 1333 234478777764
No 220
>PHA02624 large T antigen; Provisional
Probab=98.10 E-value=3.3e-05 Score=83.42 Aligned_cols=141 Identities=13% Similarity=0.064 Sum_probs=80.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
.|++..+.+|||||||||||++|.+|++.+|-..+.++.+.-. ..|... -...--+.+|||+-.
T Consensus 426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k------------s~FwL~----pl~D~~~~l~dD~t~ 489 (647)
T PHA02624 426 ENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK------------LNFELG----CAIDQFMVVFEDVKG 489 (647)
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch------------hHHHhh----hhhhceEEEeeeccc
Confidence 4666667999999999999999999999996556667654321 123332 233345889999853
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCHH
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 301 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~e 301 (428)
-+-....-..+...+-+ .-|.+.||.--.|+++..-.. ....=-|.|+|||.-- ||.-+.- ||-+.+. .|..-
T Consensus 490 ~~~~~~~Lp~G~~~dNl--~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney~-iP~T~~~--Rf~~~~~F~~k~~ 564 (647)
T PHA02624 490 QPADNKDLPSGQGMNNL--DNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEYL-IPQTVKA--RFAKVLDFKPKPY 564 (647)
T ss_pred cccccccCCcccccchh--hHHHhhcCCCCccccchhccCchhccCCCeEEeecCcc-cchhHHH--HHHHhccccccHH
Confidence 32211100000001101 235566664444444433111 1122238999999754 7776654 7877777 56554
Q ss_pred HHHH
Q 014244 302 DRIG 305 (428)
Q Consensus 302 eR~~ 305 (428)
-+..
T Consensus 565 l~~s 568 (647)
T PHA02624 565 LKKS 568 (647)
T ss_pred HHHH
Confidence 4433
No 221
>PHA02774 E1; Provisional
Probab=98.09 E-value=2.1e-05 Score=84.50 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=69.5
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE-ecccccccCCCCChHHHHHHHHHHHHHHHHhCC
Q 014244 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADIIKKGK 212 (428)
Q Consensus 134 ~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~-vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~ 212 (428)
....|+++ .+++....++||||||||||++|-+|++.++-.++. ++.. +.+- +..+ ..
T Consensus 421 l~~lk~~l--~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~---s~Fw----------Lqpl------~d 479 (613)
T PHA02774 421 LTALKDFL--KGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK---SHFW----------LQPL------AD 479 (613)
T ss_pred HHHHHHHH--hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc---cccc----------cchh------cc
Confidence 34455555 344444689999999999999999999998655443 4421 1110 1111 22
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCCCCCChh
Q 014244 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFSTLYAP 284 (428)
Q Consensus 213 p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-~~~~~V~VI~TTN~~~~Ld~A 284 (428)
-.|++|||+-. . ....+...|.++||.. .|.++..... ......|+|+|||-.-.-++.
T Consensus 480 ~ki~vlDD~t~---------~---~w~y~d~~Lrn~LdG~-~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~ 539 (613)
T PHA02774 480 AKIALLDDATH---------P---CWDYIDTYLRNALDGN-PVSIDCKHKAPVQIKCPPLLITSNIDVKAEDR 539 (613)
T ss_pred CCEEEEecCcc---------h---HHHHHHHHHHHHcCCC-cceeeecccCcccccCCCEEEecCCCcccchh
Confidence 25999999811 0 1234555688888854 4444433221 233556999999954444443
No 222
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.08 E-value=1.1e-05 Score=89.43 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=74.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccccc-----CCCCChH-------HHHHHHHHHHHHHHHhCCc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----GNAGEPA-------KLIRQRYREAADIIKKGKM 213 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s-----~~~Ge~~-------~~Ir~~F~~A~~~i~~~~p 213 (428)
...|||+|++|||||++|++|.... +.+|+.+++..+.. ...|... ..-...| .....
T Consensus 399 ~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l-------e~a~~ 471 (686)
T PRK15429 399 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF-------ELADK 471 (686)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHH-------HhcCC
Confidence 4569999999999999999998874 56899988876532 1222100 0000122 23346
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------CCChhhc
Q 014244 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------TLYAPLI 286 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------~Ld~ALl 286 (428)
..|||||||.+... ++.-|++++++.....+.+. .....++-+|+|||..- .+.+.|.
T Consensus 472 GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~ 536 (686)
T PRK15429 472 SSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAATNRDLKKMVADREFRSDLY 536 (686)
T ss_pred CeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeCCCCHHHHHHcCcccHHHH
Confidence 79999999876432 23344455542211111111 11235678999997642 1222222
Q ss_pred CCCCceE-EEeCCCHHHHHH
Q 014244 287 RDGRMEK-FYWAPTREDRIG 305 (428)
Q Consensus 287 R~gRfd~-~i~~P~~eeR~~ 305 (428)
. |+.. .|.+|...+|.+
T Consensus 537 ~--~l~~~~i~lPpLreR~~ 554 (686)
T PRK15429 537 Y--RLNVFPIHLPPLRERPE 554 (686)
T ss_pred h--ccCeeEEeCCChhhhHh
Confidence 1 3323 344888877744
No 223
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.07 E-value=8.4e-06 Score=86.40 Aligned_cols=158 Identities=18% Similarity=0.308 Sum_probs=94.4
Q ss_pred cccccccCcCCCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccccc
Q 014244 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES 187 (428)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s 187 (428)
..|+|+++++. +|.+ ..+...+|.+. +.+..|||.|++||||-.+|++|-+.. +-+||.++|+-+-
T Consensus 240 a~y~f~~Iig~---S~~m--~~~~~~akr~A-----~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP- 308 (560)
T COG3829 240 AKYTFDDIIGE---SPAM--LRVLELAKRIA-----KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP- 308 (560)
T ss_pred cccchhhhccC---CHHH--HHHHHHHHhhc-----CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC-
Confidence 34778888775 3444 33455566654 456789999999999999999998885 4589999987652
Q ss_pred CCCCChHHHHH-HHHHHHH------------HHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCcc
Q 014244 188 GNAGEPAKLIR-QRYREAA------------DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 254 (428)
Q Consensus 188 ~~~Ge~~~~Ir-~~F~~A~------------~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~ 254 (428)
+.++. .+|.... .+.......-||+|||..+. ..++.=|+.+|...+.
T Consensus 309 ------e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp-------------l~LQaKLLRVLQEkei 369 (560)
T COG3829 309 ------ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP-------------LPLQAKLLRVLQEKEI 369 (560)
T ss_pred ------HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC-------------HHHHHHHHHHHhhceE
Confidence 22221 2332210 00111134479999995442 2344556666664444
Q ss_pred ccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceE--EEe-------CCCHHHH
Q 014244 255 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYW-------APTREDR 303 (428)
Q Consensus 255 v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~--~i~-------~P~~eeR 303 (428)
..+.+. ......|-||+|||+.= ..++..|+|-. .|. +|...+|
T Consensus 370 ~rvG~t--~~~~vDVRIIAATN~nL---~~~i~~G~FReDLYYRLNV~~i~iPPLReR 422 (560)
T COG3829 370 ERVGGT--KPIPVDVRIIAATNRNL---EKMIAEGTFREDLYYRLNVIPITIPPLRER 422 (560)
T ss_pred EecCCC--CceeeEEEEEeccCcCH---HHHHhcCcchhhheeeeceeeecCCCcccC
Confidence 444443 12235788999999831 22344455432 221 6777666
No 224
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.07 E-value=0.00012 Score=73.12 Aligned_cols=203 Identities=14% Similarity=0.177 Sum_probs=104.5
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCeEEecccccccC---------CCCC---h
Q 014244 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG---------NAGE---P 193 (428)
Q Consensus 135 ~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg---------~~~i~vs~s~L~s~---------~~Ge---~ 193 (428)
......+..|....+.++||+|++|.|||++++..+.... ++++.+..+.--+. ..|. +
T Consensus 47 ~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 47 DRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred HHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 3344445555555556899999999999999999987742 34555443211100 0011 1
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEeccccccc-CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 014244 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (428)
Q Consensus 194 ~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~-~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 272 (428)
...+......+..+++...+.+|+|||+..+. ++.. . .+.+.++|-.+.+ .-++++|
T Consensus 127 ~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~--~-----qr~~Ln~LK~L~N---------------eL~ipiV 184 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR--K-----QREFLNALKFLGN---------------ELQIPIV 184 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH--H-----HHHHHHHHHHHhh---------------ccCCCeE
Confidence 11222334445567788899999999998753 3321 1 2333334433322 2356777
Q ss_pred EEeCC----CCCCChhhcCCCCceEEEe---CCCHHHHHHHHHHh---c---cCCCCCHhHHHHHhcCCChhhHHhHHHH
Q 014244 273 VTGND----FSTLYAPLIRDGRMEKFYW---APTREDRIGVCKGI---F---RNDNVADDDIVKLVDTFPGQSIDFFGAL 339 (428)
Q Consensus 273 ~TTN~----~~~Ld~ALlR~gRfd~~i~---~P~~eeR~~Il~~~---~---~~~~l~~~~la~lt~gfsgadL~~~~al 339 (428)
+.... .=.-|+-|-+ ||+.+.. .++.+-+. ++..+ + +..++...+++...-..++.-+.-+..+
T Consensus 185 ~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef~~-LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 185 GVGTREAYRALRTDPQLAS--RFEPFELPRWELDEEFRR-LLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred EeccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHHHH-HHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 76532 1123555654 7877665 55555443 33333 2 2335555555444333333333222222
Q ss_pred HhhhhHHHHHHHHHhhcCccchhhhhcC
Q 014244 340 RARVYDDEVRKWISGVGVGSIGKSLVNS 367 (428)
Q Consensus 340 ra~~~~~~v~~~i~~~~~e~~~~~l~~~ 367 (428)
-..+...+| + .|.|.|....++.
T Consensus 262 l~~aA~~AI----~-sG~E~It~~~l~~ 284 (302)
T PF05621_consen 262 LNAAAIAAI----R-SGEERITREILDK 284 (302)
T ss_pred HHHHHHHHH----h-cCCceecHHHHhh
Confidence 222222222 1 2777777766644
No 225
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.07 E-value=6.7e-06 Score=92.28 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=75.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHH-HH----HHHHHHHHHHhCCceEEEeccccccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-RQ----RYREAADIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~I-r~----~F~~A~~~i~~~~p~ILfIDEiDa~~ 225 (428)
.|||+|+||||||.+|++|++..... .++++.... .+|-+.... +. .|..-...+......+++|||+|++.
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~-~ytsG~~~s--~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms 570 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRS-IYTSGKSSS--SVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH 570 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCcc-ccCCCCCCc--cccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC
Confidence 69999999999999999999864322 111111100 011110000 00 00000011123345699999999863
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCcc-ccCCCccccCCCCCceEEEEeCCC-------------CCCChhhcCCCCc
Q 014244 226 GRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDF-------------STLYAPLIRDGRM 291 (428)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~-v~l~~~~~~~~~~~V~VI~TTN~~-------------~~Ld~ALlR~gRf 291 (428)
.. .+..|++.+...+. +.-.|. ......+.-||+|+|-. -.|+++|+. ||
T Consensus 571 ~~-------------~Q~aLlEaMEqqtIsI~KaGi-~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RF 634 (915)
T PTZ00111 571 NE-------------SRLSLYEVMEQQTVTIAKAGI-VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RF 634 (915)
T ss_pred HH-------------HHHHHHHHHhCCEEEEecCCc-ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hh
Confidence 22 23445566653221 111122 11224678899999974 257899996 99
Q ss_pred eEEEe---CCCHHHHHHH
Q 014244 292 EKFYW---APTREDRIGV 306 (428)
Q Consensus 292 d~~i~---~P~~eeR~~I 306 (428)
|.++. .|+.+.=..|
T Consensus 635 DLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred cEEEEecCCCChHHHHHH
Confidence 99888 6776654444
No 226
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.06 E-value=0.00016 Score=71.28 Aligned_cols=140 Identities=18% Similarity=0.315 Sum_probs=88.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh-C--CCeEE------eccc---------------ccccCCCCChHHH-HHHHHHHHH
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKM-G--INPIM------MSAG---------------ELESGNAGEPAKL-IRQRYREAA 205 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el-g--~~~i~------vs~s---------------~L~s~~~Ge~~~~-Ir~~F~~A~ 205 (428)
.+|+|||+|+||-+.+-|+-+++ | ++-+. .+++ ++.-..+|...+. |.++.++.+
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 79999999999999999999994 3 21111 1111 1112245555554 345555442
Q ss_pred HHHH-----hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 014244 206 DIIK-----KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (428)
Q Consensus 206 ~~i~-----~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~ 280 (428)
+.-. +..-.|++|.|.|.+...- | ..+..|. . .+...+-+|..+|..+.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~dA----Q-----~aLRRTM----E-------------kYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRDA----Q-----HALRRTM----E-------------KYSSNCRLILVCNSTSR 169 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHHH----H-----HHHHHHH----H-------------HHhcCceEEEEecCccc
Confidence 2111 2234589999999875431 1 1222222 1 33456779999999999
Q ss_pred CChhhcCCCCceEEEeCCCHHHHHHHHHHhccCCCCC
Q 014244 281 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVA 317 (428)
Q Consensus 281 Ld~ALlR~gRfd~~i~~P~~eeR~~Il~~~~~~~~l~ 317 (428)
+-+|+..+ .+-..+..|+.++...++...+..+++.
T Consensus 170 iIepIrSR-Cl~iRvpaps~eeI~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 170 IIEPIRSR-CLFIRVPAPSDEEITSVLSKVLKKEGLQ 205 (351)
T ss_pred chhHHhhh-eeEEeCCCCCHHHHHHHHHHHHHHhccc
Confidence 99998752 2333334999999999999999887665
No 227
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.04 E-value=0.00014 Score=70.94 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.....|.|+|++|+|||+||..+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 56789999999999999999999988
No 228
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.03 E-value=1.1e-05 Score=86.86 Aligned_cols=133 Identities=13% Similarity=0.193 Sum_probs=76.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH-----------hCCCeEEecccccccCCCCChHHHHHHHHHHHH-----------
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAK-----------MGINPIMMSAGELESGNAGEPAKLIRQRYREAA----------- 205 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e-----------lg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~----------- 205 (428)
.+..|||+|++||||+++|++|-+. .+.+|+.++++.+-... +-..+|....
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~l------leseLFG~~~gaftga~~~~~ 314 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL------LEAELFGYEEGAFTGSRRGGR 314 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhh------HHHHhcCCccccccCcccccc
Confidence 3457999999999999999999887 45689999988764211 1112332110
Q ss_pred -HHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 014244 206 -DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (428)
Q Consensus 206 -~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A 284 (428)
.++.......||||||+.+... ++.-|+.++++.....+.+. .....++-||++||..- . .
T Consensus 315 ~Gl~e~A~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~L--~-~ 376 (538)
T PRK15424 315 AGLFEIAHGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCDL--E-E 376 (538)
T ss_pred CCchhccCCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCCH--H-H
Confidence 1122334568999999876432 23445555553222222221 01124567899987642 1 2
Q ss_pred hcCCCCce--------E-EEeCCCHHHHH
Q 014244 285 LIRDGRME--------K-FYWAPTREDRI 304 (428)
Q Consensus 285 LlR~gRfd--------~-~i~~P~~eeR~ 304 (428)
+...|+|. . .+.+|...+|.
T Consensus 377 ~v~~g~Fr~dL~yrL~~~~I~lPPLReR~ 405 (538)
T PRK15424 377 DVRQGRFRRDLFYRLSILRLQLPPLRERV 405 (538)
T ss_pred HHhcccchHHHHHHhcCCeecCCChhhch
Confidence 23333333 2 23378877774
No 229
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.01 E-value=3.6e-06 Score=87.11 Aligned_cols=132 Identities=13% Similarity=0.160 Sum_probs=80.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 213 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~-----------~~i~~~~p 213 (428)
-+.||++|++||||+++|++|.... ..+||.++++.+-..... ..+|.... .++....-
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~------~eLFG~~kGaftGa~~~k~Glfe~A~G 174 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE------AELFGHEKGAFTGAQGGKAGLFEQANG 174 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH------HHHhccccceeecccCCcCchheecCC
Confidence 3569999999999999999988553 558999999877532211 12333221 12223345
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC-----C
Q 014244 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR-----D 288 (428)
Q Consensus 214 ~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR-----~ 288 (428)
..||+|||-.+-. ..+.-|+.+++.-+...+.+. ......|.+|++||. .++.+++. +
T Consensus 175 GtLfLDEI~~LP~-------------~~Q~kLl~~le~g~~~rvG~~--~~~~~dVRli~AT~~--~l~~~~~~g~dl~~ 237 (403)
T COG1221 175 GTLFLDEIHRLPP-------------EGQEKLLRVLEEGEYRRVGGS--QPRPVDVRLICATTE--DLEEAVLAGADLTR 237 (403)
T ss_pred CEEehhhhhhCCH-------------hHHHHHHHHHHcCceEecCCC--CCcCCCceeeecccc--CHHHHHHhhcchhh
Confidence 6999999965432 234556677774433333331 233477899999975 33343332 0
Q ss_pred CCceEEEeCCCHHHH
Q 014244 289 GRMEKFYWAPTREDR 303 (428)
Q Consensus 289 gRfd~~i~~P~~eeR 303 (428)
-|....|.+|...+|
T Consensus 238 rl~~~~I~LPpLrER 252 (403)
T COG1221 238 RLNILTITLPPLRER 252 (403)
T ss_pred hhcCceecCCChhhc
Confidence 134444558888877
No 230
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.01 E-value=4.3e-05 Score=71.66 Aligned_cols=82 Identities=13% Similarity=0.249 Sum_probs=52.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccccC--------CCC------------ChHHHHHHH
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG--------NAG------------EPAKLIRQR 200 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s~--------~~G------------e~~~~Ir~~ 200 (428)
.|++....++++||||||||++|..++.+ .|...++++..++... +.+ ..... ...
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~ 85 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQ-GVA 85 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHH-HHH
Confidence 47777788999999999999999988865 3556777776541100 000 00011 112
Q ss_pred HHHHHHHHHhCCceEEEecccccccC
Q 014244 201 YREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 201 F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
+......+....+++|+||-|.++..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 33333344566899999999998754
No 231
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.00 E-value=6.3e-05 Score=79.83 Aligned_cols=55 Identities=29% Similarity=0.445 Sum_probs=42.0
Q ss_pred hhhHHHHHHHH-----HHHhhh-----CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 126 PAFMDKLVVHI-----TKNFMS-----LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 126 ~~~~d~~~~~i-----~K~~l~-----~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
|+-.+.+++|. ++.|++ .++. ..+.+||+||+|||||+..+.+|+++|+.++..+
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l-~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQVAEFTPKL-GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHHHHHhccCC-CceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 44455555554 456665 4444 3568999999999999999999999999988866
No 232
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.99 E-value=1.9e-05 Score=84.43 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
...++|.||||||||++++.++..+
T Consensus 210 G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccC
Confidence 4579999999999999999998764
No 233
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=7.2e-05 Score=84.04 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=72.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccc------ccc---CCCCChHHHHHHHHHHHHHHHHhCCce
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE------LES---GNAGEPAKLIRQRYREAADIIKKGKMC 214 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~------L~s---~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ 214 (428)
+++--+||.||.|+|||-||+++|..+ .-.+|.+..++ +++ +|+|.++-- .+.+ .++...-+
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~Lte----avrrrP~s 662 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTE----AVKRRPYS 662 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHH----HHhcCCce
Confidence 456789999999999999999999995 23577777774 222 356654321 2222 24778889
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 279 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~ 279 (428)
||+|||||+-.. .+...|++++|.=. -.++.-......+++||+|+|.-.
T Consensus 663 VVLfdeIEkAh~-------------~v~n~llq~lD~Gr--ltDs~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 663 VVLFEEIEKAHP-------------DVLNILLQLLDRGR--LTDSHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred EEEEechhhcCH-------------HHHHHHHHHHhcCc--cccCCCcEeeccceEEEEecccch
Confidence 999999987432 23345556666111 011222234557889999999743
No 234
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.96 E-value=8.8e-05 Score=76.74 Aligned_cols=146 Identities=15% Similarity=0.167 Sum_probs=85.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc--------c------------------------ccccCCCCChHH--
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA--------G------------------------ELESGNAGEPAK-- 195 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~--------s------------------------~L~s~~~Ge~~~-- 195 (428)
.|+||-|++|||||+++++||.-+.--.+...+ + .+.+--.|.++.
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 589999999999999999999986321111110 0 011111222222
Q ss_pred --------HHHH---HHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhc-CCccccCCCcccc
Q 014244 196 --------LIRQ---RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD-NPTCVQLPGMYNK 263 (428)
Q Consensus 196 --------~Ir~---~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld-~~~~v~l~~~~~~ 263 (428)
.++. .|.- .++.+....||+|||+-.+. .+++. .|++.+. .-+.|+..|.. .
T Consensus 119 vGslDi~ka~~~g~~af~P--GlLa~AnRGIlYvDEvnlL~------------d~lvd-~LLd~aaeG~n~vereGis-i 182 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQP--GLLARANRGILYVDEVNLLD------------DHLVD-ALLDVAAEGVNDVEREGIS-I 182 (423)
T ss_pred ccccCHHHHHhcCccccCC--cchhhccCCEEEEecccccc------------HHHHH-HHHHHHHhCCceeeeCcee-e
Confidence 1110 1110 23334456799999995432 23333 3334433 22345555542 1
Q ss_pred CCCCCceEEEEeCCC-CCCChhhcCCCCceEEEe---CCCHHHHHHHHHHhccC
Q 014244 264 EENPRVPIIVTGNDF-STLYAPLIRDGRMEKFYW---APTREDRIGVCKGIFRN 313 (428)
Q Consensus 264 ~~~~~V~VI~TTN~~-~~Ld~ALlR~gRfd~~i~---~P~~eeR~~Il~~~~~~ 313 (428)
....++++|+|+|-. ..|-|.|+- ||...+. ..+.++|.+|++.-..-
T Consensus 183 ~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 183 RHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred ccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 234678899999965 478888875 7776666 67889999998766544
No 235
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.95 E-value=0.00019 Score=66.86 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
....++|+||.|+|||+|++.+.+.+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 35689999999999999999999987
No 236
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.95 E-value=8.9e-05 Score=65.17 Aligned_cols=44 Identities=32% Similarity=0.564 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 130 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 130 d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
-+.+....+.|+..+.-+.|+.+-|+||||||||++++.||+.+
T Consensus 34 ~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 34 VEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34566777888887777889999999999999999999999994
No 237
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.95 E-value=0.00044 Score=81.06 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
....+.+.||||+|+|||+||+++++....+
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 3456789999999999999999999986544
No 238
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.93 E-value=0.00011 Score=67.23 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=25.0
Q ss_pred EEEEcCCCchHHHHHHHHHHH---hCCCeEEecc
Q 014244 152 LGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~ 182 (428)
+|++||||||||+++..++.+ .|...++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 789999999999999988775 3666666654
No 239
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00024 Score=71.30 Aligned_cols=130 Identities=8% Similarity=0.097 Sum_probs=81.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------eEEecccccccCCCCChHHHHHHHHHHHHHHH-HhCC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------PIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGK 212 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~-------------~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i-~~~~ 212 (428)
+.+...||+|+.|+||+.+++.+++.+-+. ++.+.. ..... ....|+.+.+...-.. ..+.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i--~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDL--SKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcC--CHHHHHHHHHHhccCCcccCC
Confidence 467899999999999999999999997321 111210 00111 1233444444330000 0147
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCce
Q 014244 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (428)
Q Consensus 213 p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd 292 (428)
..|++||+.|.+.. . ....|+..++ ++...+.+|.+|+.++.|.+.++. |+.
T Consensus 91 ~KvvII~~~e~m~~------------~-a~NaLLK~LE-------------EPp~~t~~il~~~~~~kll~TI~S--Rc~ 142 (299)
T PRK07132 91 KKILIIKNIEKTSN------------S-LLNALLKTIE-------------EPPKDTYFLLTTKNINKVLPTIVS--RCQ 142 (299)
T ss_pred ceEEEEecccccCH------------H-HHHHHHHHhh-------------CCCCCeEEEEEeCChHhChHHHHh--CeE
Confidence 78999999876421 1 1224555555 556777888888899999999876 665
Q ss_pred EEEe-CCCHHHHHHHHHH
Q 014244 293 KFYW-APTREDRIGVCKG 309 (428)
Q Consensus 293 ~~i~-~P~~eeR~~Il~~ 309 (428)
.+-. .|+.++..+.+..
T Consensus 143 ~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EEECCCCCHHHHHHHHHH
Confidence 5555 7777777766654
No 240
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.90 E-value=3.6e-05 Score=76.48 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCC----hHHHHH----HHH
Q 014244 130 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE----PAKLIR----QRY 201 (428)
Q Consensus 130 d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge----~~~~Ir----~~F 201 (428)
.+.+++..|.|+..+.-+.|+.+=|||+|||||.+.++.||+.+-..- ..|.++..|+.. .++.|. ++-
T Consensus 91 ~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hFP~~~~ie~Yk~eL~ 167 (344)
T KOG2170|consen 91 KQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHFPHASKIEDYKEELK 167 (344)
T ss_pred HHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccCCChHHHHHHHHHHH
Confidence 355677788898888888999999999999999999999999852110 001111111111 011111 112
Q ss_pred HHHHHHHHhCCceEEEeccccccc
Q 014244 202 REAADIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 202 ~~A~~~i~~~~p~ILfIDEiDa~~ 225 (428)
....+.++.++.+|.++||+|++-
T Consensus 168 ~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 168 NRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHhcCCceEEechhhhcC
Confidence 222233468888999999999874
No 241
>PRK15115 response regulator GlrR; Provisional
Probab=97.88 E-value=2e-05 Score=82.23 Aligned_cols=132 Identities=15% Similarity=0.198 Sum_probs=78.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~-----------~~i~~~~p~ 214 (428)
...++|+|++|||||++|+++.... +.+|+.+++..+.... .-..+|..+. ..+......
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 3468999999999999999998884 4689999988763211 1112333210 012234457
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCc---
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM--- 291 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf--- 291 (428)
.|||||||.+... ++..|+.++++.....+.+. .....++-+|+||+.. ++. ++..|+|
T Consensus 231 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~--~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~ 292 (444)
T PRK15115 231 TLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSN--RDIDIDVRIISATHRD--LPK-AMARGEFRED 292 (444)
T ss_pred EEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCC--ceeeeeEEEEEeCCCC--HHH-HHHcCCccHH
Confidence 9999999876433 23445555553221111111 1112467899999863 433 3444666
Q ss_pred ------eEEEeCCCHHHHH
Q 014244 292 ------EKFYWAPTREDRI 304 (428)
Q Consensus 292 ------d~~i~~P~~eeR~ 304 (428)
...+.+|...+|.
T Consensus 293 l~~~l~~~~i~lPpLr~R~ 311 (444)
T PRK15115 293 LYYRLNVVSLKIPALAERT 311 (444)
T ss_pred HHHhhceeeecCCChHhcc
Confidence 3334478888874
No 242
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=4.8e-05 Score=75.90 Aligned_cols=124 Identities=11% Similarity=0.021 Sum_probs=78.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeE--------EecccccccCC-CC----ChHHHHHHHHHHHHHHHHhC
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------MMSAGELESGN-AG----EPAKLIRQRYREAADIIKKG 211 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i--------~vs~s~L~s~~-~G----e~~~~Ir~~F~~A~~~i~~~ 211 (428)
..+.|..+||+||+|+||+.+|.++|..+-+.-- .-+-+++.--. .| -+...+|++-+.....-..+
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 3367889999999999999999999999644210 00111110000 11 12345555555441111245
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCc
Q 014244 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 291 (428)
...|++||++|.+... -...|+..++ ++..++.+|..|+.++.|.|.++. |+
T Consensus 95 ~~kv~ii~~ad~mt~~-------------AaNaLLK~LE-------------EPp~~~~fiL~~~~~~~ll~TI~S--Rc 146 (290)
T PRK05917 95 PYKIYIIHEADRMTLD-------------AISAFLKVLE-------------DPPQHGVIILTSAKPQRLPPTIRS--RS 146 (290)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCeEEEEEeCChhhCcHHHHh--cc
Confidence 5679999999876432 1234555555 667788999999999999999876 66
Q ss_pred eEEEe
Q 014244 292 EKFYW 296 (428)
Q Consensus 292 d~~i~ 296 (428)
..+..
T Consensus 147 q~~~~ 151 (290)
T PRK05917 147 LSIHI 151 (290)
T ss_pred eEEEc
Confidence 66555
No 243
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.87 E-value=2.5e-05 Score=78.16 Aligned_cols=134 Identities=12% Similarity=0.130 Sum_probs=79.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCC------eEEecccccccCCCCChHHHHHHHHHHHHH--HHH-hCCceEEEeccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGEPAKLIRQRYREAAD--IIK-KGKMCCLMINDL 221 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~------~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~--~i~-~~~p~ILfIDEi 221 (428)
.+|+|||||||||+...++|..+-.+ +..+++++=. -.+ ..+.--..|..+.. +-. ...+..+++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r--gid-~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR--GID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc--CCc-chHHHHHHHHhhccceeccccCceeEEEecch
Confidence 89999999999999999999987542 1112222111 111 11221234554410 001 236889999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe-CCCH
Q 014244 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTR 300 (428)
Q Consensus 222 Da~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~ 300 (428)
|++...- | ..|...+. ....++-++..+|.+..+.||+.. ||.++-+ .-+.
T Consensus 141 DaMT~~A----Q---------nALRRvie-------------k~t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~pl~~ 192 (360)
T KOG0990|consen 141 DAMTRDA----Q---------NALRRVIE-------------KYTANTRFATISNPPQKIHPAQQS--RCTRFRFAPLTM 192 (360)
T ss_pred hHhhHHH----H---------HHHHHHHH-------------HhccceEEEEeccChhhcCchhhc--ccccCCCCCCCh
Confidence 9875431 1 11111111 234556677889999999999885 8888777 3344
Q ss_pred HHHHHHHHHhccCCC
Q 014244 301 EDRIGVCKGIFRNDN 315 (428)
Q Consensus 301 eeR~~Il~~~~~~~~ 315 (428)
+.-..++..+...+.
T Consensus 193 ~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 193 AQQTERQSHIRESEQ 207 (360)
T ss_pred hhhhhHHHHHHhcch
Confidence 555555666665543
No 244
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.87 E-value=1.6e-05 Score=80.64 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=71.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccc-----c---------ccCCCCChHHHHHHHHHHHHHHHHhCCce
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-----L---------ESGNAGEPAKLIRQRYREAADIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~-----L---------~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ 214 (428)
...+||.|.||||||.|.+.+++-....+ ++++.. | ..+|.-+.+.+ -.....
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaGal------------vlad~G 123 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAGAL------------VLADGG 123 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE-HH------------HHCTTS
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCCch------------hcccCc
Confidence 45899999999999999998866544333 322221 2 11122122111 233557
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-------------C
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-------------T 280 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~~-------------~ 280 (428)
|++|||+|++-... ...|.+.+++.+ .+.-.|. ...-..+.-|++++|-.. .
T Consensus 124 iccIDe~dk~~~~~-------------~~~l~eaMEqq~isi~kagi-~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 124 ICCIDEFDKMKEDD-------------RDALHEAMEQQTISIAKAGI-VTTLNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp EEEECTTTT--CHH-------------HHHHHHHHHCSCEEECTSSS-EEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred eeeecccccccchH-------------HHHHHHHHHcCeeccchhhh-cccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 99999999864321 234555555322 1111121 112246778999999665 5
Q ss_pred CChhhcCCCCceEEEe---CCCHHHHHHHHHHhcc
Q 014244 281 LYAPLIRDGRMEKFYW---APTREDRIGVCKGIFR 312 (428)
Q Consensus 281 Ld~ALlR~gRfd~~i~---~P~~eeR~~Il~~~~~ 312 (428)
++++|+. |||.++. .|+.+.-..|.+.++.
T Consensus 190 l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 190 LPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred cchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 8889996 9999987 7776666666554443
No 245
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.85 E-value=3.6e-05 Score=67.86 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=41.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC---CeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~---~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~ 225 (428)
..-|||+|+|||||+++|++|....+. +|+.+.+..+. .+.+ .......|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l-------~~a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELL-------EQAKGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHH-------HHCTTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHH-------HHcCCCEEEECChHHCC
Confidence 445999999999999999999998654 34444444322 1223 33477899999998764
Q ss_pred C
Q 014244 226 G 226 (428)
Q Consensus 226 ~ 226 (428)
.
T Consensus 83 ~ 83 (138)
T PF14532_consen 83 P 83 (138)
T ss_dssp H
T ss_pred H
Confidence 3
No 246
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.85 E-value=1.5e-05 Score=67.92 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
|+|.||||+|||++|+.+|+.+|+.++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776554
No 247
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.81 E-value=0.00017 Score=65.91 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+.+.-++++|+||+|||+++.-|++.+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4567899999999999999999998853
No 248
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.80 E-value=6.9e-05 Score=71.23 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=32.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s 183 (428)
.|++....++++||||+|||++|..+|.+. +...++++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 477777889999999999999999998753 6677777665
No 249
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.00032 Score=73.43 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=106.5
Q ss_pred HHHHHHhhhC-CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCeEEecccccc--------------cCCCCCh
Q 014244 134 VHITKNFMSL-PNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELE--------------SGNAGEP 193 (428)
Q Consensus 134 ~~i~K~~l~~-~g~~~p~glLL~GpPGtGKT~LA~aIA~elg-----~~~i~vs~s~L~--------------s~~~Ge~ 193 (428)
+.+.++|+.. ...+.+..+.+.|-||||||.+..-+-.... ...+++++.+|. ..-.+.+
T Consensus 159 ~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~ 238 (529)
T KOG2227|consen 159 MDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG 238 (529)
T ss_pred HHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc
Confidence 4556666642 3456678899999999999999987766642 234566655432 1112221
Q ss_pred -HHHHHHHHHHHHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 014244 194 -AKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (428)
Q Consensus 194 -~~~Ir~~F~~A~~~i~-~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~V 271 (428)
+......|..- .. ...|-||++||+|-++.+.. + .|+.+ -.|...+..++++
T Consensus 239 ~~~~~~~~~~~h---~~q~k~~~llVlDEmD~L~tr~~---------~----vLy~l----------Fewp~lp~sr~iL 292 (529)
T KOG2227|consen 239 TGMQHLEKFEKH---TKQSKFMLLLVLDEMDHLITRSQ---------T----VLYTL----------FEWPKLPNSRIIL 292 (529)
T ss_pred hhHHHHHHHHHH---HhcccceEEEEechhhHHhhccc---------c----eeeee----------hhcccCCcceeee
Confidence 22222233322 12 33588999999999985432 1 11111 1455677889999
Q ss_pred EEEeCCCCCCChhhcCCCCce------EEEe-CCCHHHHHHHHHHhccCCCCC------HhHHHHHhcCCChh
Q 014244 272 IVTGNDFSTLYAPLIRDGRME------KFYW-APTREDRIGVCKGIFRNDNVA------DDDIVKLVDTFPGQ 331 (428)
Q Consensus 272 I~TTN~~~~Ld~ALlR~gRfd------~~i~-~P~~eeR~~Il~~~~~~~~l~------~~~la~lt~gfsga 331 (428)
|+.+|..+.=|..|.|- +.| ...+ +.+.++..+|++.-+...... .+-.|+.+.+-+|.
T Consensus 293 iGiANslDlTdR~LprL-~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGD 364 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRL-NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGD 364 (529)
T ss_pred eeehhhhhHHHHHhhhh-hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchh
Confidence 99999998877777541 222 2233 789999999998887664322 33467777777773
No 250
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.0024 Score=63.88 Aligned_cols=132 Identities=13% Similarity=0.121 Sum_probs=81.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeE----------------EecccccccC-CCCC--hHHHHHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI----------------MMSAGELESG-NAGE--PAKLIRQRYREAADI 207 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i----------------~vs~s~L~s~-~~Ge--~~~~Ir~~F~~A~~~ 207 (428)
+.|..+||+|| +||+.+|+++|+.+-+.-- .-+-+++.-- -.|. ....||++-+.....
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 67889999996 6899999999998543210 0011121100 0121 234566655554211
Q ss_pred HHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC
Q 014244 208 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 287 (428)
Q Consensus 208 i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR 287 (428)
-..+...|++||++|.+... -...|+..++ ++..++.+|.+|+.++.|-|.++.
T Consensus 100 p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLE-------------EPp~~t~~iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN-------------AANSLLKVIE-------------EPQSEIYIFLLTNDENKVLPTIKS 153 (290)
T ss_pred cccCCcEEEEeehhhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhhCchHHHH
Confidence 12455679999999876322 1234445555 566778999999999999999876
Q ss_pred CCCceEEEeCCCHHHHHHHHH
Q 014244 288 DGRMEKFYWAPTREDRIGVCK 308 (428)
Q Consensus 288 ~gRfd~~i~~P~~eeR~~Il~ 308 (428)
|+-.+...|+.++..+++.
T Consensus 154 --Rcq~i~f~~~~~~~~~~L~ 172 (290)
T PRK07276 154 --RTQIFHFPKNEAYLIQLLE 172 (290)
T ss_pred --cceeeeCCCcHHHHHHHHH
Confidence 7766655566666556554
No 251
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.77 E-value=0.0003 Score=68.10 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=79.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~~ 227 (428)
...|-.++||+|||||..++.+|+.+|.+++..++++-.+ ...+.++|.=+ ....+-+.|||++.+-..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~-----~~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGL-----AQSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHH-----hhcCchhhhhhhhhhhHH
Confidence 3567789999999999999999999999999999886552 34555555433 123579999999876322
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC----CCCCCChhhcCCCCceEEEe--CCCHH
Q 014244 228 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW--APTRE 301 (428)
Q Consensus 228 r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN----~~~~Ld~ALlR~gRfd~~i~--~P~~e 301 (428)
.-.+..+.+......+..+...+.+.+..- .-.+..-+.+|.| ....||+.|....| -+. .||.+
T Consensus 100 -----vLS~i~~~i~~i~~al~~~~~~~~~~g~~i-~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR---pvam~~PD~~ 170 (231)
T PF12774_consen 100 -----VLSVISQQIQSIQDALRAKQKSFTLEGQEI-KLNPNCGIFITMNPGYAGRSELPENLKALFR---PVAMMVPDLS 170 (231)
T ss_dssp -----HHHHHHHHHHHHHHHHHCTSSEEEETTCEE-E--TT-EEEEEE-B-CCCC--S-HHHCTTEE---EEE--S--HH
T ss_pred -----HHHHHHHHHHHHHHhhcccccccccCCCEE-EEccceeEEEeeccccCCcccCCHhHHHHhh---eeEEeCCCHH
Confidence 122233333333333334344444433311 1124455677777 34679998875333 333 89887
Q ss_pred HHHHHH
Q 014244 302 DRIGVC 307 (428)
Q Consensus 302 eR~~Il 307 (428)
.-.+++
T Consensus 171 ~I~ei~ 176 (231)
T PF12774_consen 171 LIAEIL 176 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 252
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.77 E-value=3.8e-05 Score=80.81 Aligned_cols=133 Identities=13% Similarity=0.183 Sum_probs=77.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~-----------~~i~~~~p~ 214 (428)
...+|++|++|||||++|++|.... +.+|+.++++.+... ..-..+|.... ..+......
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~------~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD------LIESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH------HHHHHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 4569999999999999999999985 458999998876321 11223333210 011233456
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhcC
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALlR 287 (428)
.|||||+|.+... ++..|+.++++.......+. .....++-||+||+.. ..+.+.|..
T Consensus 235 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 299 (469)
T PRK10923 235 TLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGY--APVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 (469)
T ss_pred EEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCC--CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH
Confidence 8999999876432 22345555553222222221 0112456889998763 244455554
Q ss_pred CCCce-EEEeCCCHHHHH
Q 014244 288 DGRME-KFYWAPTREDRI 304 (428)
Q Consensus 288 ~gRfd-~~i~~P~~eeR~ 304 (428)
|+. ..+.+|...+|.
T Consensus 300 --~l~~~~i~~PpLreR~ 315 (469)
T PRK10923 300 --RLNVIRVHLPPLRERR 315 (469)
T ss_pred --HhcceeecCCCcccch
Confidence 553 344477766664
No 253
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.77 E-value=0.00019 Score=72.70 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=53.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 208 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~----~~Ge~--------~~~Ir~~F~~A~~~i 208 (428)
.|++.-..++|+||||||||+||..++.+. |-..++++..+..+. ..|-. .....+.+..+..++
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 477777889999999999999998776653 555666654332110 00100 001122334444455
Q ss_pred HhCCceEEEecccccccCC
Q 014244 209 KKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~~ 227 (428)
+...+.+|+||-+.++.++
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 7788999999999888654
No 254
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.77 E-value=6.2e-05 Score=77.88 Aligned_cols=75 Identities=11% Similarity=0.134 Sum_probs=50.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC-----C-eEEecccc---------------cccCCCCChHHHHH---HHHHHHHH
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGI-----N-PIMMSAGE---------------LESGNAGEPAKLIR---QRYREAAD 206 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~-----~-~i~vs~s~---------------L~s~~~Ge~~~~Ir---~~F~~A~~ 206 (428)
-.||.||||||||+|++.|++.... . ++.+.... +.+.+-..+...++ .....|..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999998643 2 33333321 33444444555554 34455544
Q ss_pred HHHhCCceEEEeccccccc
Q 014244 207 IIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~ 225 (428)
....++.+|||||||..++
T Consensus 251 ~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 251 LVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHcCCCEEEEEEChHHHH
Confidence 4457889999999998763
No 255
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.76 E-value=3e-05 Score=69.72 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.++..|+|+|+||||||++|+.+|+.+|+.++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3567899999999999999999999999988853
No 256
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.74 E-value=0.00013 Score=74.02 Aligned_cols=107 Identities=17% Similarity=0.251 Sum_probs=61.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCe-EEecccccc-------cCCCCChHHHHHHHHHHHHHHHHhCCceEEE
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP-IMMSAGELE-------SGNAGEPAKLIRQRYREAADIIKKGKMCCLM 217 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~-i~vs~s~L~-------s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILf 217 (428)
..+|+|+.|||+-|+|||+|--..+..+-.+- ..+....++ ....|++. -+...|.++.+. -.||.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d----pl~~iA~~~~~~--~~vLC 135 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD----PLPPIADELAAE--TRVLC 135 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC----ccHHHHHHHHhc--CCEEE
Confidence 44789999999999999999999998875532 122211111 01112220 011122222222 35999
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CCCCCh
Q 014244 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTLYA 283 (428)
Q Consensus 218 IDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-~~~Ld~ 283 (428)
|||+.- ..+.+.|+...|++-|= ..+|.+++|+|. |+.|++
T Consensus 136 fDEF~V----------tDI~DAMiL~rL~~~Lf---------------~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 136 FDEFEV----------TDIADAMILGRLLEALF---------------ARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred eeeeee----------cChHHHHHHHHHHHHHH---------------HCCcEEEEeCCCChHHhcc
Confidence 999842 23445565555544332 257899999996 344443
No 257
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.74 E-value=4.7e-05 Score=66.51 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=26.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L 185 (428)
+++.||||+|||++|+.+++.++. ..++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHH
Confidence 789999999999999999999994 44444444
No 258
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.73 E-value=7.6e-05 Score=78.10 Aligned_cols=132 Identities=15% Similarity=0.225 Sum_probs=75.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~-----------~~i~~~~p~ 214 (428)
...+|++|++||||+++|++|.... +.+|+.+++..+... ..-..+|.... ..+......
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES------LLESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH------HHHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 4569999999999999999998774 468999998866321 11112332110 011233457
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceE-
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 293 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~- 293 (428)
+|||||||.+... ++..|++++++.......+. .....++.||+|||..- ..+.+.|+|..
T Consensus 240 tl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~l---~~~~~~g~~~~~ 301 (457)
T PRK11361 240 TLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGH--QTIKVDIRIIAATNRDL---QAMVKEGTFRED 301 (457)
T ss_pred EEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 9999999886432 23445556653221111111 11124578999998632 12334444432
Q ss_pred --------EEeCCCHHHHH
Q 014244 294 --------FYWAPTREDRI 304 (428)
Q Consensus 294 --------~i~~P~~eeR~ 304 (428)
.+..|...+|.
T Consensus 302 l~~~l~~~~i~~ppLreR~ 320 (457)
T PRK11361 302 LFYRLNVIHLILPPLRDRR 320 (457)
T ss_pred HHHHhccceecCCChhhch
Confidence 23367777663
No 259
>PRK08118 topology modulation protein; Reviewed
Probab=97.73 E-value=9e-05 Score=67.93 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=29.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
-|++.||||+|||++|+.|++.++++++.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999887664
No 260
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.72 E-value=7.1e-05 Score=78.20 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=76.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHH-----------HHHHHhCCce
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A-----------~~~i~~~~p~ 214 (428)
...++|+|++||||+++|+++.... +.+|+.+++..+.+. .+-..+|... ...+......
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN------LLESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH------HHHHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 3568999999999999999998875 357898888866321 1112233311 0111234567
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhcC
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALlR 287 (428)
.|||||||.+... ++..|++++.+.....+.+. .....++-+|+|||.. ..+.+.|..
T Consensus 236 tl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 300 (445)
T TIGR02915 236 TLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGR--EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300 (445)
T ss_pred EEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEecCCCHHHHHHcCCccHHHHH
Confidence 9999999876432 23445555542211111111 1112467788888765 234444432
Q ss_pred CCCceE-EEeCCCHHHHHH
Q 014244 288 DGRMEK-FYWAPTREDRIG 305 (428)
Q Consensus 288 ~gRfd~-~i~~P~~eeR~~ 305 (428)
|+.. .+.+|...+|.+
T Consensus 301 --~l~~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 301 --RIAEISITIPPLRSRDG 317 (445)
T ss_pred --HhccceecCCCchhchh
Confidence 3333 333788887754
No 261
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.71 E-value=0.00032 Score=69.91 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC--CeEEeccccccc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELES 187 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~s~L~s 187 (428)
.-+.+|+.|+||||||.+|-.+++.+|- +|..++++++.+
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~S 106 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYS 106 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeee
Confidence 4679999999999999999999999985 788888888754
No 262
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.70 E-value=0.00015 Score=76.64 Aligned_cols=79 Identities=20% Similarity=0.148 Sum_probs=52.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCC------CCC--------hHHHHHHHHHHHHH
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGE--------PAKLIRQRYREAAD 206 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~------~Ge--------~~~~Ir~~F~~A~~ 206 (428)
.|+.+...+||+||||+|||+|+..+|... +..+++++..+-.+.. .|. .+..+..++ +
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~----~ 150 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAIL----A 150 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHH----H
Confidence 377777889999999999999999998874 5677887765432110 010 001112222 3
Q ss_pred HHHhCCceEEEecccccccC
Q 014244 207 IIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~~ 226 (428)
.++...|.+|+||++-.+..
T Consensus 151 ~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHhhCCCEEEEechhhhcc
Confidence 33567899999999987754
No 263
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.70 E-value=0.00015 Score=70.88 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCC------eEEeccc---c-------c-----ccCCCCChHHHHH---HHHHH
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG---E-------L-----ESGNAGEPAKLIR---QRYRE 203 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~------~i~vs~s---~-------L-----~s~~~Ge~~~~Ir---~~F~~ 203 (428)
...-++|.||+|||||+|++.+++.+... ++.+... + + .+.+-..+...++ .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 45578999999999999999999987552 3332322 1 1 2222222333222 34444
Q ss_pred HHHHHHhCCceEEEecccccc
Q 014244 204 AADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 204 A~~~i~~~~p~ILfIDEiDa~ 224 (428)
|......+++.+|||||+..+
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 433334678999999999766
No 264
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.69 E-value=0.00032 Score=71.13 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=53.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccccC----CCCCh-HH-------HHHHHHHHHHHHH
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP-AK-------LIRQRYREAADII 208 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s~----~~Ge~-~~-------~Ir~~F~~A~~~i 208 (428)
.|++.-..+++|||||||||+||..++.+ .|-..++++..+-.+. ..|-. .+ ...+.+..+..++
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 36777778999999999999999987755 3556666665331110 00100 00 0112333444455
Q ss_pred HhCCceEEEecccccccCC
Q 014244 209 KKGKMCCLMINDLDAGAGR 227 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~~ 227 (428)
+...+.+|+||-+-++.++
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 7788999999999888753
No 265
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.62 E-value=3.1e-05 Score=71.29 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 014244 152 LGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~el 173 (428)
++|+|+||+||||+++.+++++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999997
No 266
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.59 E-value=6.5e-05 Score=74.55 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC--CCeEEecccccccCCCCChHHHHHHHHHHHH
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 205 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg--~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~ 205 (428)
.+++||.||||||||.||-+|++++| ++|..+.++++.+.-+-.++-+. +.|++|.
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvLm-enfRRaI 121 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVLM-ENFRRAI 121 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHHH-HHHHHHh
Confidence 46999999999999999999999986 58899999999887776665443 5577664
No 267
>PRK07261 topology modulation protein; Provisional
Probab=97.58 E-value=0.0002 Score=65.73 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=32.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCC
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~G 191 (428)
-|++.|+||+|||+||+.++..++.+.+....-.....|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~ 42 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQE 42 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccccc
Confidence 37899999999999999999999998877654433333433
No 268
>PRK13947 shikimate kinase; Provisional
Probab=97.57 E-value=0.00024 Score=64.26 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=32.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCCh
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (428)
.|+|.|+||||||++|+.+|+.+|++|+... .+.....|.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~~ 43 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGMT 43 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCCc
Confidence 4899999999999999999999999987744 2333334443
No 269
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.56 E-value=0.00059 Score=64.43 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=31.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s 183 (428)
.|+.....++++|+||||||++|..+|.+. |.+.++++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 467777789999999999999999998774 4566666543
No 270
>PRK13695 putative NTPase; Provisional
Probab=97.56 E-value=0.00045 Score=63.14 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el 173 (428)
-++|.|+||+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998775
No 271
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.56 E-value=0.00056 Score=64.50 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014244 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+.++|.||+|+|||++.+.|+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999999854
No 272
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00055 Score=67.31 Aligned_cols=122 Identities=7% Similarity=-0.067 Sum_probs=74.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeE--------------EecccccccCC-CC--ChHHHHHHHHHHHHHHH-
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------------MMSAGELESGN-AG--EPAKLIRQRYREAADII- 208 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i--------------~vs~s~L~s~~-~G--e~~~~Ir~~F~~A~~~i- 208 (428)
.+|..+||+||+|+||..+|.++|+.+-+.-- .-+-+++.--+ .+ -....+|++-+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 46889999999999999999999998533210 00111111000 01 11233444433321000
Q ss_pred HhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCC
Q 014244 209 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 288 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~ 288 (428)
..+...|++|+++|.+... ....|+..++ ++..++.+|.+|+.++.|.|-++.
T Consensus 85 e~~~~KV~II~~ae~m~~~-------------AaNaLLK~LE-------------EPp~~t~fiLit~~~~~lLpTI~S- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ-------------SANSLLKLIE-------------EPPKNTYGIFTTRNENNILNTILS- 137 (261)
T ss_pred hcCCCEEEEeccHhhhCHH-------------HHHHHHHhhc-------------CCCCCeEEEEEECChHhCchHhhh-
Confidence 1234679999999875321 1234555555 667888999999999999999886
Q ss_pred CCceEEEe
Q 014244 289 GRMEKFYW 296 (428)
Q Consensus 289 gRfd~~i~ 296 (428)
|+.++..
T Consensus 138 -RCq~~~~ 144 (261)
T PRK05818 138 -RCVQYVV 144 (261)
T ss_pred -heeeeec
Confidence 7766444
No 273
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.53 E-value=0.00056 Score=65.92 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=28.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecc
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~ 182 (428)
|++....++|.||||||||++|..++.. -|...++++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 5666778999999999999998655443 2556666654
No 274
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.52 E-value=0.00019 Score=74.86 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=40.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC-CeEEecccccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEeccccc
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDA 223 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~-~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~-~~~p~ILfIDEiDa 223 (428)
+.....+++.||||||||+++.+++.+.-+ .--.++.+ +++..+-. ..+. -....+|+|||+..
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a-----------~Lf~~L~~---~~lg~v~~~DlLI~DEvgy 271 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVA-----------KLFYNIST---RQIGLVGRWDVVAFDEVAT 271 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHH-----------HHHHHHHH---HHHhhhccCCEEEEEcCCC
Confidence 345678999999999999999998877210 00112222 22222111 1122 56678999999976
Q ss_pred cc
Q 014244 224 GA 225 (428)
Q Consensus 224 ~~ 225 (428)
+.
T Consensus 272 lp 273 (449)
T TIGR02688 272 LK 273 (449)
T ss_pred Cc
Confidence 44
No 275
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.52 E-value=9.8e-05 Score=80.84 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=52.6
Q ss_pred CCCCchhhHHHHHHH-HHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC----eEEecccc------cccCC
Q 014244 121 GLYIAPAFMDKLVVH-ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----PIMMSAGE------LESGN 189 (428)
Q Consensus 121 ~~~i~~~~~d~~~~~-i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~----~i~vs~s~------L~s~~ 189 (428)
+-.+|+.+.+.++.| .++..+.. .+..+..++|+||||||||++|+++++.++.+ ++++.-+. +..-+
T Consensus 9 ~~~~~~~~~~~viG~~~a~~~l~~-a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~ 87 (608)
T TIGR00764 9 EIPVPERLIDQVIGQEEAVEIIKK-AAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVP 87 (608)
T ss_pred ccCcchhhHhhccCHHHHHHHHHH-HHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHH
Confidence 335566666665432 22222221 01123489999999999999999999998754 22333332 23345
Q ss_pred CCChHHHHHHHHHHH
Q 014244 190 AGEPAKLIRQRYREA 204 (428)
Q Consensus 190 ~Ge~~~~Ir~~F~~A 204 (428)
.|...+.++..|..|
T Consensus 88 ~~~g~~~~~~~~~~~ 102 (608)
T TIGR00764 88 AGEGREIVEDYKKKA 102 (608)
T ss_pred HhhchHHHHHHHHHh
Confidence 677888899988888
No 276
>PRK09354 recA recombinase A; Provisional
Probab=97.51 E-value=0.00081 Score=68.82 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=53.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 208 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s~----~~Ge~--------~~~Ir~~F~~A~~~i 208 (428)
.|++.-..++||||||||||+||..++.+ .|-..++++..+-.+. -.|-. .....+.+..+..++
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 46777788999999999999999977655 3556666654431110 00000 001222344444556
Q ss_pred HhCCceEEEecccccccC
Q 014244 209 KKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~ 226 (428)
+...+.+|+||=+-++.+
T Consensus 135 ~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hcCCCCEEEEeChhhhcc
Confidence 788899999999988765
No 277
>PRK06762 hypothetical protein; Provisional
Probab=97.50 E-value=0.00018 Score=64.96 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~ 186 (428)
|..++|.|+||+|||++|+.+++.++...+.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 67899999999999999999999997666666665554
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.50 E-value=0.0002 Score=68.57 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=53.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEeccccccc--------------CCC--C-------------
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES--------------GNA--G------------- 191 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s--------------~~~--G------------- 191 (428)
.|++....++++|+||+|||+++..++.+ .|...++++..+-.. ++. |
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 47888899999999999999999998765 355666655432110 000 0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 014244 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 192 e~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~ 225 (428)
........++......+....|.+++||++..+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0011123455555556667789999999998653
No 279
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.49 E-value=0.00025 Score=74.91 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=64.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC---CCeEEecccccccCCCCChHHHHH-HHHHHHH-----------HHHHhCC
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIR-QRYREAA-----------DIIKKGK 212 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~s~L~s~~~Ge~~~~Ir-~~F~~A~-----------~~i~~~~ 212 (428)
....|||+|++||||-.+|++|-+... -+|+.++++.+- +.++. ++|.... .......
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip-------~~l~ESELFGhekGAFTGA~~~r~G~fE~A~ 235 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP-------ENLLESELFGHEKGAFTGAITRRIGRFEQAN 235 (464)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC-------HHHHHHHhhcccccCcCCcccccCcceeEcC
Confidence 345699999999999999999988854 489999988653 12221 2333210 1112335
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 014244 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (428)
Q Consensus 213 p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 278 (428)
...||||||..+.-. ++.=|+.++...+.-.+.+. ..-.-+|-||++||+.
T Consensus 236 GGTLfLDEI~~mpl~-------------~Q~kLLRvLqe~~~~rvG~~--~~i~vdvRiIaaT~~d 286 (464)
T COG2204 236 GGTLFLDEIGEMPLE-------------LQVKLLRVLQEREFERVGGN--KPIKVDVRIIAATNRD 286 (464)
T ss_pred CceEEeeccccCCHH-------------HHHHHHHHHHcCeeEecCCC--cccceeeEEEeecCcC
Confidence 669999999654322 22234444442222222221 1123467799999973
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.49 E-value=0.00044 Score=71.44 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=51.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC------CCCC--------hHHHHHHHHHHHHH
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE--------PAKLIRQRYREAAD 206 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~------~~Ge--------~~~~Ir~~F~~A~~ 206 (428)
.|+.+...+||+|+||+|||+|+..+|... +.++++++..+-.+. ..|. .+..+..+++
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~---- 152 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILA---- 152 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHH----
Confidence 367777889999999999999999988764 346777765432110 0010 0111222222
Q ss_pred HHHhCCceEEEecccccccC
Q 014244 207 IIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~~ 226 (428)
.+...+|.+|+||+|..+..
T Consensus 153 ~i~~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 153 SIEELKPDLVIIDSIQTVYS 172 (372)
T ss_pred HHHhcCCcEEEEcchHHhhc
Confidence 33567899999999987754
No 281
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.48 E-value=0.00025 Score=64.92 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
.+.++|.|+||+|||++|+.++++++..++.++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 3579999999999999999999998877665443
No 282
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.47 E-value=0.00013 Score=70.03 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
.|.-+||||+||+|||++|+.++.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 366799999999999999999873
No 283
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.47 E-value=3.9e-05 Score=80.48 Aligned_cols=132 Identities=11% Similarity=0.155 Sum_probs=73.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHH-----------HHHHHhCCce
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A-----------~~~i~~~~p~ 214 (428)
+..+++.|++||||+++|+++.... +.+|+.+++..+.+.+. -..+|... ...+......
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFEQADGG 230 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEEECCCC
Confidence 4579999999999999999998874 45899999876632111 11222210 0111234567
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------CCChhhcC
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------TLYAPLIR 287 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------~Ld~ALlR 287 (428)
.|||||||.+... ++..|++++++-......+. .....++.||+|||..- .+.+.|..
T Consensus 231 tl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~ 295 (463)
T TIGR01818 231 TLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGR--TPIKVDVRIVAATHQNLEALVRQGKFREDLFH 295 (463)
T ss_pred eEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH
Confidence 8999999876432 23344555542111111111 11123567888887542 33333332
Q ss_pred CCCceE-EEeCCCHHHH
Q 014244 288 DGRMEK-FYWAPTREDR 303 (428)
Q Consensus 288 ~gRfd~-~i~~P~~eeR 303 (428)
|+.. .+.+|...+|
T Consensus 296 --rl~~~~i~lPpLr~R 310 (463)
T TIGR01818 296 --RLNVIRIHLPPLRER 310 (463)
T ss_pred --HhCcceecCCCcccc
Confidence 3333 4447776665
No 284
>PRK03839 putative kinase; Provisional
Probab=97.46 E-value=0.00011 Score=67.50 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=27.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
.|+|.|+||+|||++++.+|+.++++++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3889999999999999999999999887654
No 285
>PLN02200 adenylate kinase family protein
Probab=97.44 E-value=0.00015 Score=70.13 Aligned_cols=41 Identities=39% Similarity=0.685 Sum_probs=33.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~ 186 (428)
++.+.|..++|.||||+|||++|+.+|+++|+. .++.+++.
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 455678899999999999999999999999864 56665554
No 286
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.43 E-value=0.00014 Score=64.28 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
|+|+|+||+|||++|+.+|+++|++++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999887544
No 287
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.43 E-value=0.00043 Score=75.14 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc--cc---ccc--CCCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA--GE---LES--GNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~--s~---L~s--~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (428)
--..|||+|-||||||.+.+.+++-+-...+. |+ +. |.. ...+++.++ .-+. ..+-.....|..|||
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGLTayVtrd~dtkql----VLes-GALVLSD~GiCCIDE 534 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGLTAYVTKDPDTRQL----VLES-GALVLSDNGICCIDE 534 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcceeeEEecCcccee----eeec-CcEEEcCCceEEchh
Confidence 34679999999999999999999876544222 21 10 000 000111111 1111 111234456888999
Q ss_pred cccccCCCCCCcccchhhHHH-HHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------------CCChhhc
Q 014244 221 LDAGAGRMGGTTQYTVNNQMV-NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLI 286 (428)
Q Consensus 221 iDa~~~~r~~~~~~~~~~~~v-~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------------~Ld~ALl 286 (428)
+|++-.. ...+..+.. ++|+ ++. ..|. -..-+.+.-||+++|-.+ .|+|.||
T Consensus 535 FDKM~dS-----trSvLhEvMEQQTv-SIA-------KAGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLL 600 (804)
T KOG0478|consen 535 FDKMSDS-----TRSVLHEVMEQQTL-SIA-------KAGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLL 600 (804)
T ss_pred hhhhhHH-----HHHHHHHHHHHhhh-hHh-------hcce-eeeccccceeeeeeccccccCCCCCchhhccCCChhhh
Confidence 9997322 111222222 2222 111 1122 113356778999999322 5899999
Q ss_pred CCCCceEEEe---CCCHH
Q 014244 287 RDGRMEKFYW---APTRE 301 (428)
Q Consensus 287 R~gRfd~~i~---~P~~e 301 (428)
+ |||.+|. .|++.
T Consensus 601 S--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 601 S--RFDLIFLLLDKPDER 616 (804)
T ss_pred h--hhcEEEEEecCcchh
Confidence 8 9999888 56655
No 288
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00012 Score=66.02 Aligned_cols=33 Identities=30% Similarity=0.307 Sum_probs=30.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
..||++|-||||||++|..||..+|+.+|.++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 368999999999999999999999999988763
No 289
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.40 E-value=0.00064 Score=60.24 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=24.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
++|.|+||+|||++|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876554
No 290
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.39 E-value=0.00015 Score=66.38 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=27.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~ 186 (428)
|+|.||||+|||++|+.+|+++|+ ..++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 789999999999999999999986 445554443
No 291
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.39 E-value=0.00082 Score=63.97 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=51.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCeEEecccccccC-C-----------------------C
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG-N-----------------------A 190 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---------g~~~i~vs~s~L~s~-~-----------------------~ 190 (428)
.|++....+.|+||||||||++|..+|... +...++++..+-... . .
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence 477777889999999999999999998652 245666665431100 0 0
Q ss_pred CChHHHHHHHHHHHHHHHHhC-CceEEEeccccccc
Q 014244 191 GEPAKLIRQRYREAADIIKKG-KMCCLMINDLDAGA 225 (428)
Q Consensus 191 Ge~~~~Ir~~F~~A~~~i~~~-~p~ILfIDEiDa~~ 225 (428)
-..+ .+...+......+... .+.+|+||-+.++.
T Consensus 94 ~~~~-~l~~~l~~l~~~l~~~~~~~liVIDSis~~~ 128 (235)
T cd01123 94 YNSD-HQLQLLEELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred CCHH-HHHHHHHHHHHHHhhcCCeeEEEEeCcHHHH
Confidence 0011 1122333333444555 89999999998764
No 292
>PRK14531 adenylate kinase; Provisional
Probab=97.37 E-value=0.00019 Score=66.30 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.-|++.||||+|||++|+.+|+.+|+..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 458999999999999999999999877655
No 293
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.37 E-value=0.0021 Score=61.22 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 014244 149 PLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
++.++|+||.|+|||++.+.|+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999983
No 294
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.37 E-value=0.00011 Score=77.23 Aligned_cols=132 Identities=20% Similarity=0.276 Sum_probs=76.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccc-----ccCCCCChHHH-------HHHHHHHHHHHHHhC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL-----ESGNAGEPAKL-------IRQRYREAADIIKKG 211 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L-----~s~~~Ge~~~~-------Ir~~F~~A~~~i~~~ 211 (428)
+....|||.|++||||-.+|++|-+.. .-+|+.++++-| +|+.+|---.. -+..|+-|
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElA------- 316 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELA------- 316 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeec-------
Confidence 346789999999999999999998875 458999998765 33333321000 01223333
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCc
Q 014244 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (428)
Q Consensus 212 ~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 291 (428)
...-||+|||.-+.-. ++.=|+..+.+-....+.+. ..-.-.|-||++||+ .|-. ..|.|+|
T Consensus 317 dGGTLFLDEIGelPL~-------------lQaKLLRvLQegEieRvG~~--r~ikVDVRiIAATNR--DL~~-~V~~G~F 378 (550)
T COG3604 317 DGGTLFLDEIGELPLA-------------LQAKLLRVLQEGEIERVGGD--RTIKVDVRVIAATNR--DLEE-MVRDGEF 378 (550)
T ss_pred CCCeEechhhccCCHH-------------HHHHHHHHHhhcceeecCCC--ceeEEEEEEEeccch--hHHH-HHHcCcc
Confidence 4568999999654322 23445555553322222222 011246789999997 2323 3445555
Q ss_pred eE--------EEe-CCCHHHH
Q 014244 292 EK--------FYW-APTREDR 303 (428)
Q Consensus 292 d~--------~i~-~P~~eeR 303 (428)
-. +-. +|...+|
T Consensus 379 RaDLYyRLsV~Pl~lPPLRER 399 (550)
T COG3604 379 RADLYYRLSVFPLELPPLRER 399 (550)
T ss_pred hhhhhhcccccccCCCCcccC
Confidence 32 111 6766666
No 295
>PRK14532 adenylate kinase; Provisional
Probab=97.36 E-value=0.00016 Score=66.65 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=25.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|+|.||||+|||++|+.+|+++|+.++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 48899999999999999999999875544
No 296
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.36 E-value=0.00039 Score=65.34 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg 174 (428)
.+++.||+|+|||+++++++.++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998875
No 297
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.34 E-value=0.0014 Score=62.06 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=26.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.|++....+.|+||||+|||++|..+|...
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 477777889999999999999999998763
No 298
>PRK00625 shikimate kinase; Provisional
Probab=97.34 E-value=0.00021 Score=66.06 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=28.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
.|+|.|.||+|||++++.+|+.++++++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998875
No 299
>PRK08233 hypothetical protein; Provisional
Probab=97.33 E-value=0.00092 Score=60.73 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC-CCeEEe
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMG-INPIMM 180 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg-~~~i~v 180 (428)
+..|.+.|+||+||||+|+.++..++ ...+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 46788999999999999999999986 334433
No 300
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.32 E-value=0.00056 Score=71.19 Aligned_cols=132 Identities=13% Similarity=0.161 Sum_probs=74.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~-----------~~i~~~~p~ 214 (428)
...++++|++||||+++|+++.... +.+|+.++++.+... .+-..+|.... ..+.....+
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES------LLESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH------HHHHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 4679999999999999999998764 468999998865321 11112333210 111234578
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCce--
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME-- 292 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd-- 292 (428)
.|||||||.+... ++.-|+.+++........+. .....++.+|+||+..- ..++.+|+|.
T Consensus 236 tl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~~---~~~~~~~~~~~~ 297 (441)
T PRK10365 236 TLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDL---AAEVNAGRFRQD 297 (441)
T ss_pred EEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 9999999987543 12334444442211111111 01123456888886632 2344556663
Q ss_pred -------EEEeCCCHHHHH
Q 014244 293 -------KFYWAPTREDRI 304 (428)
Q Consensus 293 -------~~i~~P~~eeR~ 304 (428)
..+.+|...+|.
T Consensus 298 l~~~l~~~~i~~ppLreR~ 316 (441)
T PRK10365 298 LYYRLNVVAIEVPSLRQRR 316 (441)
T ss_pred HHHHhccceecCCChhhcc
Confidence 334477777663
No 301
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.31 E-value=0.00052 Score=67.93 Aligned_cols=25 Identities=16% Similarity=-0.065 Sum_probs=23.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
++++|.||||+|||++.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999999864
No 302
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.30 E-value=0.00084 Score=63.83 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=50.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---h-CCCeEEeccccccc--------------------------CCCCCh
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---M-GINPIMMSAGELES--------------------------GNAGEP 193 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---l-g~~~i~vs~s~L~s--------------------------~~~Ge~ 193 (428)
.|++....+|+.||||||||++|..++.+ . |-+.++++..+-.. .+....
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 47888889999999999999999976654 2 77877776432110 000000
Q ss_pred ---HHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 014244 194 ---AKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 194 ---~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
...+..+.....+.++..++.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1112233333334446777899999999888
No 303
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.29 E-value=0.00074 Score=60.77 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
++|.||||||||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4689999999999999999999866554
No 304
>PRK13948 shikimate kinase; Provisional
Probab=97.28 E-value=0.0006 Score=63.60 Aligned_cols=35 Identities=17% Similarity=0.005 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
++|..|+|.|++|||||++++.+|+.+|++|+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 46788999999999999999999999999998655
No 305
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.27 E-value=0.0028 Score=58.81 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
+++...+.|.||.|+|||+|.+++...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 345567899999999999999999744
No 306
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.27 E-value=0.00026 Score=61.89 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=27.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
|.+.|+||||||++|+.+|+.+|++++...
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987765
No 307
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.26 E-value=0.00025 Score=65.20 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=25.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
|+|.||||+|||++|+.+|+.+|+..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999999876554
No 308
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.26 E-value=0.00068 Score=63.38 Aligned_cols=121 Identities=17% Similarity=0.078 Sum_probs=56.3
Q ss_pred EEEEEcCCCchHHHHHHHH-HHH---hCCCeEEecccccc----cCCCCChHH--HH----------HHHHHHHHHHHHh
Q 014244 151 ILGIWGGKGQGKSFQCELV-FAK---MGINPIMMSAGELE----SGNAGEPAK--LI----------RQRYREAADIIKK 210 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aI-A~e---lg~~~i~vs~s~L~----s~~~Ge~~~--~I----------r~~F~~A~~~i~~ 210 (428)
..+++|.||+|||+.|-.. ... .|..++. +-..|. ....+.... ++ ...+... ...
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDW---RKL 77 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHH---TTS
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhh---ccc
Confidence 4689999999999988654 333 3555554 332221 111111100 00 0011111 011
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCC
Q 014244 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 290 (428)
Q Consensus 211 ~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gR 290 (428)
...+||+|||+....+.+.... ......+ +.| . .....+.-||++|-++..||+.+++ +
T Consensus 78 ~~~~liviDEa~~~~~~r~~~~--~~~~~~~-~~l----~------------~hRh~g~diiliTQ~~~~id~~ir~--l 136 (193)
T PF05707_consen 78 PKGSLIVIDEAQNFFPSRSWKG--KKVPEII-EFL----A------------QHRHYGWDIILITQSPSQIDKFIRD--L 136 (193)
T ss_dssp GTT-EEEETTGGGTSB---T-T------HHH-HGG----G------------GCCCTT-EEEEEES-GGGB-HHHHC--C
T ss_pred CCCcEEEEECChhhcCCCcccc--ccchHHH-HHH----H------------HhCcCCcEEEEEeCCHHHHhHHHHH--H
Confidence 2678999999999888775311 1112222 222 1 1233567899999999999998764 7
Q ss_pred ceEEEe
Q 014244 291 MEKFYW 296 (428)
Q Consensus 291 fd~~i~ 296 (428)
.+..+.
T Consensus 137 ve~~~~ 142 (193)
T PF05707_consen 137 VEYHYH 142 (193)
T ss_dssp EEEEEE
T ss_pred HheEEE
Confidence 777765
No 309
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.26 E-value=0.0031 Score=60.29 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEecc
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~ 182 (428)
|+.+..-++|.|+||+|||+++..++... |.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 77777789999999999999998877663 777777664
No 310
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.26 E-value=0.00077 Score=69.45 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+|+||.|||.-|||||+|--.....
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~ 137 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDA 137 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhc
Confidence 46999999999999999999988755
No 311
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.23 E-value=0.0023 Score=62.75 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEeccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 183 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s 183 (428)
.|++....++++||||||||++|..+|.+ .|-+.++++..
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 37777789999999999999999987664 35566665543
No 312
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.23 E-value=0.00094 Score=59.90 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=28.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L 185 (428)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 766666665444
No 313
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.23 E-value=0.0069 Score=66.18 Aligned_cols=129 Identities=12% Similarity=0.020 Sum_probs=73.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC--CeEEecccccccCCCCCh--HHHHHH---HHHHHHHHHHhCCceEEEecccc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEP--AKLIRQ---RYREAADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~s~L~s~~~Ge~--~~~Ir~---~F~~A~~~i~~~~p~ILfIDEiD 222 (428)
-||||-|++||+||+++++++.-+.- +|+.+..+--.+..+|.. +..++. .|+- .++......||||||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~p--Glla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQR--GLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCC--CceeeccCCEEEecCcc
Confidence 48999999999999999999998754 777766555455555532 111100 0111 12223345799999995
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCC---CCCChhhcCCCCceEEEe
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLIRDGRMEKFYW 296 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~---~~Ld~ALlR~gRfd~~i~ 296 (428)
-+. .-+...|++.++.-. .|+=+|.. .....+..+|+|-|.. ..|+++++- ||+..+.
T Consensus 104 ~~~-------------~~~~~aLleame~G~vtIeR~G~s-~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 104 RLE-------------PGTAARLAAALDTGEVRLERDGLA-LRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred cCC-------------HHHHHHHHHHHhCCcEEEEECCcE-EecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 432 122334555554211 11112221 1122455667763322 458999985 9999998
No 314
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.23 E-value=0.00088 Score=66.29 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L 185 (428)
++.++|.|+||||||++|+.+++.+. +++.++...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 46789999999999999999999983 3344454444
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.23 E-value=0.0011 Score=63.80 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~ 182 (428)
.|+++...+|++||||||||++|..++.+ .|-+.++++.
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 47888889999999999999999876554 3556666553
No 316
>PRK13946 shikimate kinase; Provisional
Probab=97.23 E-value=0.0007 Score=62.72 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
.++.|+|.|+||||||++++.+|+.+|++|+...
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3567999999999999999999999999988755
No 317
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.22 E-value=0.0012 Score=73.79 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEeccccccc----CCCCCh--------HHHHHHHHHHHHHHH
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES----GNAGEP--------AKLIRQRYREAADII 208 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s----~~~Ge~--------~~~Ir~~F~~A~~~i 208 (428)
.|++....++|+||||||||+||..++.. .|-..++++..+-.+ +..|-. .......+..+..++
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 37777789999999999999999754443 355556655544221 000100 000112333344555
Q ss_pred HhCCceEEEecccccccC
Q 014244 209 KKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~ 226 (428)
+...+.+|+||-|.++..
T Consensus 135 ~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 135 RSGALDIVVIDSVAALVP 152 (790)
T ss_pred hcCCCeEEEEcchhhhcc
Confidence 677899999999998875
No 318
>PRK13949 shikimate kinase; Provisional
Probab=97.22 E-value=0.00031 Score=64.51 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=28.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
.|+|.|+||+|||++++.+|+.++++++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999888755
No 319
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.21 E-value=0.00039 Score=67.14 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|.-|+|.||||+|||++|+.+|+.+|+.++.+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 455699999999999999999999998766554
No 320
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.20 E-value=0.0011 Score=68.85 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=47.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCC------eEEeccc--------------ccccCCCCChHHH-H---HHHHHHHH
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG--------------ELESGNAGEPAKL-I---RQRYREAA 205 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~------~i~vs~s--------------~L~s~~~Ge~~~~-I---r~~F~~A~ 205 (428)
.-++|.||||||||+|++.|++....+ ++.+... ++.....+++... + ..+...|.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 348999999999999999999985433 2333311 1112223333322 2 23334444
Q ss_pred HHHHhCCceEEEeccccccc
Q 014244 206 DIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 206 ~~i~~~~p~ILfIDEiDa~~ 225 (428)
.....++..||||||+..++
T Consensus 249 ~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHcCCCeEEEEEChhHHH
Confidence 44457889999999998663
No 321
>PRK14527 adenylate kinase; Provisional
Probab=97.19 E-value=0.00033 Score=65.10 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
+.|..+++.||||+|||++|+.+|+++|+..+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 457789999999999999999999999875443
No 322
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.19 E-value=0.0038 Score=57.11 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=48.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH---hCCCeEE---ecccc-------------cc--c-----CCC-CCh---HHHHHHH
Q 014244 151 ILGIWGGKGQGKSFQCELVFAK---MGINPIM---MSAGE-------------LE--S-----GNA-GEP---AKLIRQR 200 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e---lg~~~i~---vs~s~-------------L~--s-----~~~-Ge~---~~~Ir~~ 200 (428)
-|.+|+++|.|||++|-.+|-. .|..+.. +++.. +. . .|. .+. ....+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 4678999999999999988776 3555444 44421 00 0 000 111 1244567
Q ss_pred HHHHHHHHHhCCceEEEecccccc
Q 014244 201 YREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 201 F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
++.|.+.+......+|+||||-..
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a 107 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYA 107 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhH
Confidence 777777778888999999998544
No 323
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.19 E-value=0.0026 Score=74.80 Aligned_cols=146 Identities=15% Similarity=0.182 Sum_probs=95.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc---c---cCC-CCC-hHH--HHHHHHHHHHHHHHhCCceEEE
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL---E---SGN-AGE-PAK--LIRQRYREAADIIKKGKMCCLM 217 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L---~---s~~-~Ge-~~~--~Ir~~F~~A~~~i~~~~p~ILf 217 (428)
..+++||-|.||+|||+|..++|+++|-..+.++.++- + ..+ .++ ++. .....|-.| -....-++
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~a-----mr~G~WVl 1616 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHA-----MRDGGWVL 1616 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHH-----hhcCCEEE
Confidence 45679999999999999999999999999999887753 1 111 122 111 111233333 22345788
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC-CCCceEEEEeCC------CCCCChhhcCCCC
Q 014244 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGND------FSTLYAPLIRDGR 290 (428)
Q Consensus 218 IDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~-~~~V~VI~TTN~------~~~Ld~ALlR~gR 290 (428)
+||+.- ..|-|..-|..++|+-....++..+..-. .++..|.+|-|. ...||..++- |
T Consensus 1617 LDEiNL-------------aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--R 1681 (4600)
T COG5271 1617 LDEINL-------------ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--R 1681 (4600)
T ss_pred eehhhh-------------hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--h
Confidence 999842 22444455666677655555555543322 244456666553 3478999985 8
Q ss_pred ceEEEe-CCCHHHHHHHHHHhccC
Q 014244 291 MEKFYW-APTREDRIGVCKGIFRN 313 (428)
Q Consensus 291 fd~~i~-~P~~eeR~~Il~~~~~~ 313 (428)
|.+++. ..+.++...|...++..
T Consensus 1682 FsvV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1682 FSVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred hheEEecccccchHHHHHHhhCCc
Confidence 998888 88888999998877754
No 324
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00034 Score=65.04 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=26.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L 185 (428)
-|+|.||||+||||+|+.||+.++ +..++...+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 478999999999999999999955 455554444
No 325
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.18 E-value=0.00039 Score=63.51 Aligned_cols=29 Identities=41% Similarity=0.698 Sum_probs=25.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.+++.||||+|||++|+.+++++|+..+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 68899999999999999999999866444
No 326
>PRK06547 hypothetical protein; Provisional
Probab=97.18 E-value=0.00041 Score=64.05 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
..+..|++.|++|+|||++|+.+++.+++.++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 4578999999999999999999999998776654
No 327
>PRK05973 replicative DNA helicase; Provisional
Probab=97.17 E-value=0.0058 Score=59.46 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s 183 (428)
.|+.+...++|.|+||+|||+++-.++.+. |.+.++++..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 377667789999999999999998777653 6666666543
No 328
>PRK04040 adenylate kinase; Provisional
Probab=97.16 E-value=0.00043 Score=64.77 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh--CCCeE
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM--GINPI 178 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el--g~~~i 178 (428)
|+.++++|+||||||++++.+++++ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 6789999999999999999999999 55543
No 329
>PRK06696 uridine kinase; Validated
Probab=97.15 E-value=0.001 Score=63.46 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=38.3
Q ss_pred HHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccc
Q 014244 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 186 (428)
Q Consensus 133 ~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~ 186 (428)
+..++...+... ...|..|.+.|+||+|||++|+.|+..+ |..++.++..++.
T Consensus 7 ~~~la~~~~~~~-~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 7 IKELAEHILTLN-LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred HHHHHHHHHHhC-CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 334444444322 2358899999999999999999999998 6677776655544
No 330
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.00085 Score=64.86 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=45.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC--------CeEEe-cccccccCCCCChHHHHHHHHHH------HH---HHHHhC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGI--------NPIMM-SAGELESGNAGEPAKLIRQRYRE------AA---DIIKKG 211 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~--------~~i~v-s~s~L~s~~~Ge~~~~Ir~~F~~------A~---~~i~~~ 211 (428)
...||.||||||||++.+-||.-+.. .+..+ ..+++.....|-+.--+-.+.+- +. ..++..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 46899999999999999999987422 22233 34455544445442221111111 11 334688
Q ss_pred CceEEEecccc
Q 014244 212 KMCCLMINDLD 222 (428)
Q Consensus 212 ~p~ILfIDEiD 222 (428)
.|-|+++|||.
T Consensus 218 ~PEViIvDEIG 228 (308)
T COG3854 218 SPEVIIVDEIG 228 (308)
T ss_pred CCcEEEEeccc
Confidence 99999999994
No 331
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.15 E-value=0.0025 Score=58.72 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEecccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~ 184 (428)
.+|+.||||+|||++|..++.+++.+.+++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777766554
No 332
>PRK14530 adenylate kinase; Provisional
Probab=97.14 E-value=0.00043 Score=65.58 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.|+|.||||+|||++|+.+|+.+|++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 588999999999999999999999876643
No 333
>PRK06217 hypothetical protein; Validated
Probab=97.14 E-value=0.00043 Score=63.94 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
-|+|.|+||+|||++|+++++.+|++++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876644
No 334
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.14 E-value=0.00058 Score=61.60 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
|.|.|+||||||+|++.+++. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 689999999999999999999 877664
No 335
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.14 E-value=0.0016 Score=65.26 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCeEEecccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGE 184 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg---------~~~i~vs~s~ 184 (428)
.|++....++++||||||||++|..+|...- -..++++..+
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4777788899999999999999999887632 2566666543
No 336
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.12 E-value=0.0053 Score=65.12 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=51.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC------CCCChHHHHH----HHHHHHHHHHHh
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGEPAKLIR----QRYREAADIIKK 210 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~------~~Ge~~~~Ir----~~F~~A~~~i~~ 210 (428)
.|+.+...+||+|+||+|||+|+..++... |-++++++..+-... ..|-....+. ..+......+..
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 377777889999999999999999987764 446777776533211 0111000000 001122233466
Q ss_pred CCceEEEecccccccC
Q 014244 211 GKMCCLMINDLDAGAG 226 (428)
Q Consensus 211 ~~p~ILfIDEiDa~~~ 226 (428)
.+|.+|+||.|-.+..
T Consensus 169 ~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 169 ENPQACVIDSIQTLYS 184 (454)
T ss_pred cCCcEEEEecchhhcc
Confidence 7899999999987643
No 337
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.12 E-value=0.00047 Score=74.37 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=79.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHH----HHH-HHHHHHHhCCceEEEecccccc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ----RYR-EAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~----~F~-~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
..||+.|-||||||-+.+++++-+-..++. ++.. +.-.|-+...+++ -|- +| ..+--....|..|||+|++
T Consensus 379 inv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGka--SSaAGLTaaVvkD~esgdf~iEA-GALmLADnGICCIDEFDKM 454 (764)
T KOG0480|consen 379 INVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKA--SSAAGLTAAVVKDEESGDFTIEA-GALMLADNGICCIDEFDKM 454 (764)
T ss_pred ceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcc--cccccceEEEEecCCCCceeeec-CcEEEccCceEEechhccc
Confidence 479999999999999999999887655333 2210 0111111111110 010 11 1112345568889999997
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCc-cccCCCCCceEEEEeCCCC-------------CCChhhcCCCC
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-YNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 290 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~-~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR~gR 290 (428)
.-+. +......|-+|++ ++... -...-+.|--||+++|-.. .+++|++. |
T Consensus 455 d~~d----qvAihEAMEQQtI----------SIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--R 518 (764)
T KOG0480|consen 455 DVKD----QVAIHEAMEQQTI----------SIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--R 518 (764)
T ss_pred ChHh----HHHHHHHHHhhee----------hheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--h
Confidence 5432 2122222222222 11111 0112346667899998543 57899997 9
Q ss_pred ceEEEe---CCCHHHHHHHHHHhc
Q 014244 291 MEKFYW---APTREDRIGVCKGIF 311 (428)
Q Consensus 291 fd~~i~---~P~~eeR~~Il~~~~ 311 (428)
||.++. -|++..=..|-+.++
T Consensus 519 FDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 519 FDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred hcEEEEEecCCchHHHHHHHHHHH
Confidence 999888 677766666644443
No 338
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.12 E-value=0.0024 Score=58.81 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=28.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEecccc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~ 184 (428)
+|+.|+||+|||++|..++...+.+.+++....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~ 34 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAE 34 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccC
Confidence 689999999999999999988777777775543
No 339
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.11 E-value=0.0011 Score=64.15 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=28.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L 185 (428)
|+|.|+||+|||++|+.+++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 566677765444
No 340
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.11 E-value=0.0031 Score=63.54 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=26.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.|++....++|+||||||||.+|..+|...
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 367778899999999999999999988763
No 341
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.00042 Score=76.23 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=76.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEe-cccccccCCCCChHHHHHHHH-H----HHHHHHHhCCceEEEeccccc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM-SAGELESGNAGEPAKLIRQRY-R----EAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~v-s~s~L~s~~~Ge~~~~Ir~~F-~----~A~~~i~~~~p~ILfIDEiDa 223 (428)
..+||.|-||||||.|-+.+++-+-..++.. .++ .-+|-+...+++.+ . +| +.+-...+.|..|||+|+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgs----s~~GLTAav~rd~~tge~~Lea-GALVlAD~Gv~cIDEfdK 394 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGS----SAAGLTAAVVRDKVTGEWVLEA-GALVLADGGVCCIDEFDK 394 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccc----cccCceeEEEEccCCCeEEEeC-CEEEEecCCEEEEEeccC
Confidence 5799999999999999999998876554431 111 11122111111111 0 11 111245678999999998
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCc-cccCCCCCceEEEEeCCCC-------------CCChhhcCCC
Q 014244 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-YNKEENPRVPIIVTGNDFS-------------TLYAPLIRDG 289 (428)
Q Consensus 224 ~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~-~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR~g 289 (428)
+-... . ..+.+.+.. +-+++..- ....-+.+.-|++++|-.. .|+++||.
T Consensus 395 m~~~d----r---------~aihEaMEQ-QtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS-- 458 (682)
T COG1241 395 MNEED----R---------VAIHEAMEQ-QTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS-- 458 (682)
T ss_pred CChHH----H---------HHHHHHHHh-cEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--
Confidence 63321 0 112222221 11121111 1112346777888888654 58899997
Q ss_pred CceEEEe---CCCHHHHHHH
Q 014244 290 RMEKFYW---APTREDRIGV 306 (428)
Q Consensus 290 Rfd~~i~---~P~~eeR~~I 306 (428)
|||.++. .|+.+.=..|
T Consensus 459 RFDLifvl~D~~d~~~D~~i 478 (682)
T COG1241 459 RFDLIFVLKDDPDEEKDEEI 478 (682)
T ss_pred hCCeeEEecCCCCccchHHH
Confidence 9999888 6766543333
No 342
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.10 E-value=0.0024 Score=62.28 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEecc
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~ 182 (428)
|+.+-..++|.||||+|||+++..+|... |..+++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 56666789999999999999999877763 666666654
No 343
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.10 E-value=0.0045 Score=58.82 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEeccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 183 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s 183 (428)
.|+++...+++.|+||+|||++|..++.+ .|...++++..
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 37777788999999999999999988765 36566665543
No 344
>PRK02496 adk adenylate kinase; Provisional
Probab=97.09 E-value=0.0005 Score=63.28 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=26.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
-+++.||||+|||++|+.+|+.+|+..+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 478999999999999999999998765543
No 345
>PRK04296 thymidine kinase; Provisional
Probab=97.09 E-value=0.0017 Score=60.66 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=41.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccc-c-------cccCCCCChH-----HHHHHHHHHHHHHHHhCCc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG-E-------LESGNAGEPA-----KLIRQRYREAADIIKKGKM 213 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s-~-------L~s~~~Ge~~-----~~Ir~~F~~A~~~i~~~~p 213 (428)
...+++||||+|||+++..++..+ |..++.++++ + +.+ ..|... .....++..+.+ ....+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~-~lg~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVS-RIGLSREAIPVSSDTDIFELIEE--EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEec-CCCCcccceEeCChHHHHHHHHh--hCCCC
Confidence 367899999999999998887764 5555555431 1 111 112110 112234443322 34567
Q ss_pred eEEEecccc
Q 014244 214 CCLMINDLD 222 (428)
Q Consensus 214 ~ILfIDEiD 222 (428)
.+|+|||+.
T Consensus 80 dvviIDEaq 88 (190)
T PRK04296 80 DCVLIDEAQ 88 (190)
T ss_pred CEEEEEccc
Confidence 899999993
No 346
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00044 Score=63.30 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
|-+.||||||||++|+.+|+.+|+++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999998765
No 347
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.07 E-value=0.0031 Score=68.67 Aligned_cols=98 Identities=20% Similarity=0.137 Sum_probs=59.6
Q ss_pred CCCCchhhHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC----CeEEecccccccCCCCC----
Q 014244 121 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGE---- 192 (428)
Q Consensus 121 ~~~i~~~~~d~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~----~~i~vs~s~L~s~~~Ge---- 192 (428)
+..+|+.|+-.-+..+...+.. +..+.+..|.|+|+||+|||++|+++|..++. +++.+....+.....|+
T Consensus 365 G~~pP~~f~rpeV~~iL~~~~~-~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~ 443 (568)
T PRK05537 365 GLEIPEWFSFPEVVAELRRTYP-PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFS 443 (568)
T ss_pred CCCCChhhcHHHHHHHHHHHhc-cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCC
Confidence 4455666665656666666654 33456778999999999999999999999875 34556655554333332
Q ss_pred ---hHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014244 193 ---PAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 193 ---~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
.+..++.+-..|..++..+ .++++|-+
T Consensus 444 ~~er~~~~~~l~~~a~~v~~~G--g~vI~~~~ 473 (568)
T PRK05537 444 KEDRDLNILRIGFVASEITKNG--GIAICAPI 473 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--CEEEEEeC
Confidence 1222332323443444444 46666644
No 348
>PRK14528 adenylate kinase; Provisional
Probab=97.06 E-value=0.00061 Score=63.39 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.+++.||||+|||++|+.+|+.+|++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 488999999999999999999999876553
No 349
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.04 E-value=0.0049 Score=63.12 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
|++.-....|+||||||||.||..+|-.
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~ 149 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVT 149 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHH
Confidence 6777788899999999999999987643
No 350
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.03 E-value=0.00056 Score=64.55 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=25.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
|+|.||||+|||++|+.+|+.+|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876555
No 351
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.01 E-value=0.0014 Score=67.72 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=45.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC-----CeEEec----c-----------cccccCCCCCh-HHHHH---HHHHHHHH
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMS----A-----------GELESGNAGEP-AKLIR---QRYREAAD 206 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~-----~~i~vs----~-----------s~L~s~~~Ge~-~~~Ir---~~F~~A~~ 206 (428)
-.||.||||||||+|++.+++.+.. .++.+- . ..+...+..++ ...++ .....|..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999998643 222211 0 11111122122 22222 23344444
Q ss_pred HHHhCCceEEEeccccccc
Q 014244 207 IIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 207 ~i~~~~p~ILfIDEiDa~~ 225 (428)
....++..+|++||+...+
T Consensus 215 f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 215 LVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHcCCCEEEEEeCcHHHH
Confidence 4558899999999998764
No 352
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.01 E-value=0.0069 Score=56.16 Aligned_cols=19 Identities=32% Similarity=0.050 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 014244 152 LGIWGGKGQGKSFQCELVF 170 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA 170 (428)
++|+||.|.|||++.+.|+
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 353
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.01 E-value=0.00066 Score=64.33 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=25.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
-|+++||||+|||++|+.+|+.+|+..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 38899999999999999999999976555
No 354
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.00 E-value=0.0062 Score=57.09 Aligned_cols=23 Identities=26% Similarity=0.031 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 014244 149 PLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
...++|.||.|+|||++.++|+.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 35799999999999999999993
No 355
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.00 E-value=0.00078 Score=61.10 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=27.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
.++|.|+||||||++++.+|+.+|++++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 588899999999999999999999988764
No 356
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00054 Score=63.29 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=27.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
.++++|.||||||++|+.++ ++|...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9999888765
No 357
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.99 E-value=0.0034 Score=63.48 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHH
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
.|++.....+|+||||||||.+|..+|-
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 3777778899999999999999987764
No 358
>PF13245 AAA_19: Part of AAA domain
Probab=96.97 E-value=0.0013 Score=52.73 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=23.3
Q ss_pred cEEEEEcCCCchHH-HHHHHHHHHh------CCCeEEeccc
Q 014244 150 LILGIWGGKGQGKS-FQCELVFAKM------GINPIMMSAG 183 (428)
Q Consensus 150 ~glLL~GpPGtGKT-~LA~aIA~el------g~~~i~vs~s 183 (428)
..+++.|||||||| ++++.++... +-.++.++..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 34667999999999 5566666655 4455666554
No 359
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.96 E-value=0.0017 Score=66.24 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=41.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC----CeEEec-ccccc---------cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGI----NPIMMS-AGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~----~~i~vs-~s~L~---------s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~I 215 (428)
..+|+.||+|+|||++.+++..++.- +++.+. ..++. ...+|.... -|..+....-...|.+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~----~~~~~l~~~lr~~pd~ 198 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTL----SFANALRAALREDPDV 198 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCc----CHHHHHHHhhccCCCE
Confidence 46899999999999999999987642 233321 11111 111222111 2333322225678999
Q ss_pred EEeccc
Q 014244 216 LMINDL 221 (428)
Q Consensus 216 LfIDEi 221 (428)
|++||+
T Consensus 199 i~vgEi 204 (343)
T TIGR01420 199 ILIGEM 204 (343)
T ss_pred EEEeCC
Confidence 999999
No 360
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.95 E-value=0.0022 Score=63.47 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=42.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccc---cCC-CCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE---SGN-AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~---s~~-~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
-|+|+|.||+|||++|+.|+.. .+..++.++...+. +.| -...++.+|..+..+.+..- .+..|+++|+.--
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCch
Confidence 3789999999999999999987 46677777755543 112 13357788877665533322 3447999998643
Q ss_pred c
Q 014244 224 G 224 (428)
Q Consensus 224 ~ 224 (428)
+
T Consensus 82 i 82 (270)
T PF08433_consen 82 I 82 (270)
T ss_dssp S
T ss_pred H
Confidence 3
No 361
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.94 E-value=0.0035 Score=59.25 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 143 ~~g~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.||.+....++|.|+-|+|||++++.++.+
T Consensus 46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCCCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 578888899999999999999999999766
No 362
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.93 E-value=0.002 Score=57.26 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
++...++|.|+.|+|||++++.+++.+|..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 445689999999999999999999999975
No 363
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.93 E-value=0.0018 Score=65.23 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=42.9
Q ss_pred CchhhHHHHHHHHHHHhhh-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 124 IAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 124 i~~~~~d~~~~~i~K~~l~-~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
++|.-+ +.+..+.+.++. ...+.++..|.|.|+||||||++++.+|+.+|++|+.+.
T Consensus 108 l~~~~~-~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQL-ARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHH-HHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 344433 445666666553 345567789999999999999999999999999999533
No 364
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0012 Score=60.98 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=29.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
..|.|.|++|+|||++.+++|+.++.+|+.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 45889999999999999999999999999855
No 365
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.92 E-value=0.0054 Score=55.65 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+++...+.|.||+|+|||+|.+.|+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455689999999999999999999874
No 366
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.91 E-value=0.001 Score=61.09 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
+..|+|.||+|+|||++++.+|+.++++++....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999998877653
No 367
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.90 E-value=0.00068 Score=60.44 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=25.2
Q ss_pred EEcCCCchHHHHHHHHHHHhCCCeEEecccccc
Q 014244 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (428)
Q Consensus 154 L~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~ 186 (428)
|.||||+|||++|+.||++.|+ ..++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999976 455555443
No 368
>PRK01184 hypothetical protein; Provisional
Probab=96.90 E-value=0.00098 Score=61.26 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=25.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
+.|+|.||||+|||++++ +++++|++++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 368999999999999998 789999877654
No 369
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.88 E-value=0.004 Score=58.29 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=34.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCeEEecccccccCC
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGN 189 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el-g~~~i~vs~s~L~s~~ 189 (428)
...|..+++.|+||+|||+++..+..++ +-.++.+++.++....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 3679999999999999999999999998 7788999988876443
No 370
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.88 E-value=0.0044 Score=56.32 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s 183 (428)
.+++.||||+|||+++..+|..+ |..+..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999988874 5666665544
No 371
>PRK04182 cytidylate kinase; Provisional
Probab=96.87 E-value=0.001 Score=60.19 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=26.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|+|.|+||||||++|+.+|+.+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999988765
No 372
>PLN02674 adenylate kinase
Probab=96.87 E-value=0.001 Score=64.86 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L 185 (428)
+++..|+|.||||+|||++|+.+|+.+|+..+ +.+++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~Gdl 65 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDM 65 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHH
Confidence 34567899999999999999999999986544 44444
No 373
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.87 E-value=0.0045 Score=56.46 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccCC
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN 189 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~~ 189 (428)
|..|.|+|.||+|||++|+++.+.+ |.+.+.+.+..+...+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 5678999999999999999999885 8889999888876554
No 374
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.85 E-value=0.0039 Score=57.86 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.-.++|.||+|||||+|.++||.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 34456899999999999999999987
No 375
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.85 E-value=0.0018 Score=64.50 Aligned_cols=71 Identities=11% Similarity=0.233 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH------hCCCeEEecccccccCCCCChHHHHHHHHHHH-----------HHHHHh
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAK------MGINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKK 210 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e------lg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A-----------~~~i~~ 210 (428)
...-+||.||.|.|||+||+.|..- +.-.|+.+++..|.. .+ ....+|... ..+++.
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg----d~--amsalfghvkgaftga~~~r~gllrs 280 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG----DT--AMSALFGHVKGAFTGARESREGLLRS 280 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecC----ch--HHHHHHhhhccccccchhhhhhhhcc
Confidence 3345899999999999999999865 455799999988862 22 122333221 245667
Q ss_pred CCceEEEecccccc
Q 014244 211 GKMCCLMINDLDAG 224 (428)
Q Consensus 211 ~~p~ILfIDEiDa~ 224 (428)
.....||+|||..+
T Consensus 281 adggmlfldeigel 294 (531)
T COG4650 281 ADGGMLFLDEIGEL 294 (531)
T ss_pred CCCceEehHhhhhc
Confidence 77889999999665
No 376
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.85 E-value=0.0015 Score=59.12 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=24.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC---eEEeccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAG 183 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~---~i~vs~s 183 (428)
.....++.++|+|+||+|||++.+++...+... ++.....
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~ 61 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCD 61 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEE
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 334557899999999999999999888875433 5555444
No 377
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.84 E-value=0.006 Score=58.26 Aligned_cols=22 Identities=36% Similarity=0.152 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 014244 150 LILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~ 171 (428)
..++|.||.|+|||++.+.|+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999874
No 378
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.83 E-value=0.0013 Score=55.15 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
++++++||+|+|||+++...+.++.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999999998887754
No 379
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.83 E-value=0.00089 Score=63.69 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
..+|||+||||||||++|+++..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3599999999999999999999764
No 380
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.82 E-value=0.00094 Score=56.67 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 014244 152 LGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~el 173 (428)
|+|.|+||+|||++|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999988
No 381
>PTZ00035 Rad51 protein; Provisional
Probab=96.82 E-value=0.0075 Score=61.56 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.|++....+.|+||||||||+++..+|...
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 377777889999999999999999887543
No 382
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.81 E-value=0.011 Score=55.49 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 014244 150 LILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~ 171 (428)
+.++|.||.|+|||++.+.|+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999883
No 383
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.81 E-value=0.0056 Score=65.61 Aligned_cols=82 Identities=10% Similarity=0.031 Sum_probs=51.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH-h---CCCeEEecccccccC--------------C------------CCC-
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK-M---GINPIMMSAGELESG--------------N------------AGE- 192 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e-l---g~~~i~vs~s~L~s~--------------~------------~Ge- 192 (428)
.|++....+||+|+||+|||++|..++.+ + |-+.++++..+-... + ...
T Consensus 26 GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 26 GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccc
Confidence 37777789999999999999999977654 2 555555554321100 0 000
Q ss_pred -----hHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 014244 193 -----PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 193 -----~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~ 225 (428)
....+..++......+...++.+|+||-+..+.
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 143 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALF 143 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHH
Confidence 001123445555555677788999999997754
No 384
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.81 E-value=0.004 Score=57.77 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
....++|.||+|+|||++.++++....
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 356899999999999999999998853
No 385
>PRK14526 adenylate kinase; Provisional
Probab=96.80 E-value=0.0012 Score=63.00 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L 185 (428)
++|.||||+|||++|+.+|+.+++..+ +.+++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHI--STGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--ecChH
Confidence 789999999999999999999987554 44444
No 386
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.79 E-value=0.00095 Score=62.13 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el 173 (428)
..+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999997777666665
No 387
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.77 E-value=0.0047 Score=58.00 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEeccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 183 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s 183 (428)
.+..+|.||||||||++.+.++.. .|..++.+..+
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 357889999999999999988765 46677776654
No 388
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.75 E-value=0.0022 Score=69.37 Aligned_cols=35 Identities=29% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC-CeEEecc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSA 182 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~-~~i~vs~ 182 (428)
..+.++|.||||+|||+||++||+.+.. +++.+.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3469999999999999999999999754 3444555
No 389
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.75 E-value=0.0015 Score=61.70 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeE
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i 178 (428)
.|..+++.|+||+|||++|+.+|.++|+..+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 3678999999999999999999999987653
No 390
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.74 E-value=0.0014 Score=58.97 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|.|+|+||+|||++|+.+++.+|.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 47899999999999999999999988655
No 391
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0091 Score=53.45 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
.+...++|.||+|+|||+|.++|+..+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446899999999999999999998753
No 392
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.74 E-value=0.0029 Score=64.26 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCC-Ch----H---HHHHHHHHHHHHHHHhCCceEEEecc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG-EP----A---KLIRQRYREAADIIKKGKMCCLMIND 220 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~G-e~----~---~~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (428)
.+.++|.|+||||||+|++.+++..+.+++.-.+-+......+ +. + ..+...+...... ....+.+||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~-~~~a~~iif~D~ 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYA-VRHAHKIAFIDT 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHH-HhhcCCeEEEcC
Confidence 3578999999999999999999999998876554434322221 11 1 2333333222112 244567999984
No 393
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.74 E-value=0.0021 Score=64.53 Aligned_cols=70 Identities=13% Similarity=0.235 Sum_probs=42.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC-----CCeEEecc-cccc-------cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSA-GELE-------SGNAGEPAKLIRQRYREAADIIKKGKMC 214 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg-----~~~i~vs~-s~L~-------s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ 214 (428)
..+++++.||+|+|||+++++++.+.. ..++.+.. .++. .-..++......++.+.+ -+..|.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~a----LR~~pD 206 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKAT----LRLRPD 206 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHH----hcCCCC
Confidence 346899999999999999999998862 22333221 1111 000111111233344444 678899
Q ss_pred EEEeccc
Q 014244 215 CLMINDL 221 (428)
Q Consensus 215 ILfIDEi 221 (428)
.|++.|+
T Consensus 207 ~iivGEi 213 (299)
T TIGR02782 207 RIIVGEV 213 (299)
T ss_pred EEEEecc
Confidence 9999999
No 394
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.73 E-value=0.015 Score=55.15 Aligned_cols=25 Identities=20% Similarity=-0.017 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
....++|.||.|+|||++.+.++.-
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998743
No 395
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.73 E-value=0.0019 Score=66.45 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC---CeEEecccccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELE 186 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~---~~i~vs~s~L~ 186 (428)
..|..+.|.||.|||||++.++|...+.. .++.+....+.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIA 62 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHH
Confidence 45778999999999999999999888643 35544444333
No 396
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.0029 Score=61.77 Aligned_cols=52 Identities=27% Similarity=0.452 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhhhC---CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 128 FMDKLVVHITKNFMSL---PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 128 ~~d~~~~~i~K~~l~~---~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.+++.....+|.|+.+ ...+.|+.+||=|+||+|||++|.-||..+|+.-+.
T Consensus 65 l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi 119 (299)
T COG2074 65 LLEKGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVI 119 (299)
T ss_pred HHHhcCHHHHHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceee
Confidence 3444455667777753 466789999999999999999999999999997554
No 397
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.0021 Score=66.44 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+.....++|.||+|+|||+++..+|..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3446789999999999999999999863
No 398
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.71 E-value=0.011 Score=59.21 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEiDa 223 (428)
+..+..+.++|+|+.|+|||++.+.|.+-+|-..+....+...+.. +. ..|..| ......+++.||++.
T Consensus 71 ~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~------~~f~~a----~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 71 GNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QE------HRFGLA----RLEGKRAVIGDEVQK 139 (304)
T ss_pred CCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cC------CCchhh----hhcCCEEEEecCCCC
Confidence 3466778999999999999999999998888765443333222221 11 134444 434456888899864
Q ss_pred c
Q 014244 224 G 224 (428)
Q Consensus 224 ~ 224 (428)
.
T Consensus 140 ~ 140 (304)
T TIGR01613 140 G 140 (304)
T ss_pred C
Confidence 3
No 399
>PRK04328 hypothetical protein; Provisional
Probab=96.70 E-value=0.0027 Score=61.81 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=28.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEec
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 181 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs 181 (428)
.|++....+|++||||||||.||..++.+ .|-+.++++
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 36777789999999999999999876554 344555544
No 400
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.70 E-value=0.0035 Score=64.84 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=41.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC-----CCeEEecc-cccc-----------cCCCCChHHHHHHHHHHHHHHHHhCCc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSA-GELE-----------SGNAGEPAKLIRQRYREAADIIKKGKM 213 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg-----~~~i~vs~-s~L~-----------s~~~Ge~~~~Ir~~F~~A~~~i~~~~p 213 (428)
.+|+.||+|+|||++.+++..+.. .+.+.+.. .++. ...+|.... -|..+....-...|
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~----~~~~~l~~aLR~~P 226 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVD----SFANGIRLALRRAP 226 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCcc----CHHHHHHHhhccCC
Confidence 578999999999999999988863 23444321 1211 111222111 24444333357799
Q ss_pred eEEEeccc
Q 014244 214 CCLMINDL 221 (428)
Q Consensus 214 ~ILfIDEi 221 (428)
.+|++.|+
T Consensus 227 D~I~vGEi 234 (372)
T TIGR02525 227 KIIGVGEI 234 (372)
T ss_pred CEEeeCCC
Confidence 99999999
No 401
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.69 E-value=0.038 Score=53.92 Aligned_cols=137 Identities=13% Similarity=0.263 Sum_probs=75.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCe---EEecccccccCC---C------C-----ChHHHHHHHHHHHHHHH
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP---IMMSAGELESGN---A------G-----EPAKLIRQRYREAADII 208 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~---i~vs~s~L~s~~---~------G-----e~~~~Ir~~F~~A~~~i 208 (428)
.+.|-.+.+.|++|||||+++..+...+.-.+ +.++. .....+ + . +.+..+...-....+..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 34566788999999999999999988765422 22222 221111 1 0 01111111111111111
Q ss_pred H------hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 014244 209 K------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (428)
Q Consensus 209 ~------~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 282 (428)
+ ...+++|+|||+.. . . ..++.+.+++ . ...--++-+|..+-....||
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~---~-----~--~k~~~l~~~~----~------------~gRH~~is~i~l~Q~~~~lp 142 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGD---K-----K--LKSKILRQFF----N------------NGRHYNISIIFLSQSYFHLP 142 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCC---c-----h--hhhHHHHHHH----h------------cccccceEEEEEeeecccCC
Confidence 1 13478999999731 0 0 1123333333 2 12235688999999999999
Q ss_pred hhhcCCCCceEEEe-CCCHHHHHHHHHHhc
Q 014244 283 APLIRDGRMEKFYW-APTREDRIGVCKGIF 311 (428)
Q Consensus 283 ~ALlR~gRfd~~i~-~P~~eeR~~Il~~~~ 311 (428)
+.++. -.+.++. .-+..+...|++.+.
T Consensus 143 ~~iR~--n~~y~i~~~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 143 PNIRS--NIDYFIIFNNSKRDLENIYRNMN 170 (241)
T ss_pred HHHhh--cceEEEEecCcHHHHHHHHHhcc
Confidence 88643 6677665 445666666666554
No 402
>PLN02459 probable adenylate kinase
Probab=96.67 E-value=0.0022 Score=63.12 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|..++|.||||+|||++|+.+|+.+|+..+.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 34458888999999999999999999865444
No 403
>PRK13764 ATPase; Provisional
Probab=96.66 E-value=0.003 Score=68.97 Aligned_cols=27 Identities=22% Similarity=0.094 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
...++|+.||||+|||+++++++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998864
No 404
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.64 E-value=0.028 Score=58.64 Aligned_cols=79 Identities=13% Similarity=0.214 Sum_probs=47.3
Q ss_pred HhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 014244 139 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (428)
Q Consensus 139 ~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfI 218 (428)
.+.......++ .++|+||-+||||++.+.+.+...-.++.++.-++...... +.+.+..-..+ .....+.|||
T Consensus 28 ~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~-----l~d~~~~~~~~-~~~~~~yifL 100 (398)
T COG1373 28 RLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE-----LLDLLRAYIEL-KEREKSYIFL 100 (398)
T ss_pred HHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh-----HHHHHHHHHHh-hccCCceEEE
Confidence 33333344444 89999999999999998888876554666665555422211 11222221111 2225589999
Q ss_pred cccccc
Q 014244 219 NDLDAG 224 (428)
Q Consensus 219 DEiDa~ 224 (428)
|||...
T Consensus 101 DEIq~v 106 (398)
T COG1373 101 DEIQNV 106 (398)
T ss_pred ecccCc
Confidence 999654
No 405
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.64 E-value=0.015 Score=54.81 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=49.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH---hCCCeEE---eccc----cc--cc--------------CCCC----ChHHHHHH
Q 014244 150 LILGIWGGKGQGKSFQCELVFAK---MGINPIM---MSAG----EL--ES--------------GNAG----EPAKLIRQ 199 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~---vs~s----~L--~s--------------~~~G----e~~~~Ir~ 199 (428)
-.|++|+++|.|||+.|-.+|-. .|..+.. +++. +. .. .|.. +.....+.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 46889999999999999988877 3444333 2221 11 00 0111 11245667
Q ss_pred HHHHHHHHHHhCCceEEEecccccc
Q 014244 200 RYREAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 200 ~F~~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
.|+.|.+.+......+|++|||-..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~A 127 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYA 127 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHH
Confidence 7888888888888999999998543
No 406
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.63 E-value=0.0078 Score=56.28 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L 185 (428)
..|..+.|.|++|+|||+++++++..+ |...+.+.+..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 457789999999999999999999986 455666665544
No 407
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.63 E-value=0.0078 Score=60.91 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.|+.+-..+.++||||+|||++|..+|..
T Consensus 91 gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 91 GGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 47777788999999999999999988763
No 408
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.63 E-value=0.0097 Score=55.23 Aligned_cols=76 Identities=16% Similarity=0.084 Sum_probs=42.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CeEEeccccc--ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGEL--ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~s~L--~s~~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
+++...+.|.||.|+|||+|.++|+..... .-+.+.+..+ ......-+. --+++..-|.. -...|.++++||-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~lara--l~~~p~lllLDEP 98 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAA--LLRNATFYLFDEP 98 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHH--HhcCCCEEEEECC
Confidence 345568999999999999999999987422 1222222111 101100010 11233333311 3668999999997
Q ss_pred ccc
Q 014244 222 DAG 224 (428)
Q Consensus 222 Da~ 224 (428)
-+.
T Consensus 99 ts~ 101 (177)
T cd03222 99 SAY 101 (177)
T ss_pred ccc
Confidence 543
No 409
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.62 E-value=0.003 Score=63.43 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCe
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 177 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~ 177 (428)
+.+.|..+++.|++|||||++|..+|..+|.+.
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 446789999999999999999999999999874
No 410
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.62 E-value=0.0072 Score=55.63 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 186 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~ 186 (428)
..+..++|.|+||+|||++++.++..+ |...+.+++..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 567789999999999999999999986 4455666665553
No 411
>PRK12338 hypothetical protein; Provisional
Probab=96.61 E-value=0.0022 Score=64.94 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeE
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i 178 (428)
.|..+++.|+||||||++|+++|..+|+..+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 5789999999999999999999999998654
No 412
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.60 E-value=0.0076 Score=56.81 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~ 182 (428)
|+.++|.||+|+|||+.+--+|..+ +..+-.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence 7889999999999999988888774 344444443
No 413
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.60 E-value=0.0021 Score=58.74 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+.|..|+|.|+||+|||++|+++++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999885
No 414
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.59 E-value=0.0096 Score=60.94 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
|+..-..+.++|+||+|||.+|..+|..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 6666778899999999999999987744
No 415
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0079 Score=54.82 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+++...+.|.||+|+|||+|.++|+...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4455689999999999999999999985
No 416
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.58 E-value=0.0024 Score=49.84 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=24.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-CCCeEEecc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKM-GINPIMMSA 182 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~el-g~~~i~vs~ 182 (428)
+.+.|+||+|||++++++++.+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999996 344444443
No 417
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.58 E-value=0.018 Score=60.66 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s 183 (428)
.|..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 47889999999999999999998775 6666666653
No 418
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.54 E-value=0.0035 Score=58.88 Aligned_cols=36 Identities=31% Similarity=0.645 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC-CeEEecc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSA 182 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~-~~i~vs~ 182 (428)
..|..|.|.||+|||||+|+++|++.++. .+..++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~ 40 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQ 40 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 35778999999999999999999999843 3334444
No 419
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.54 E-value=0.0084 Score=54.65 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~ 184 (428)
.+..+.|.|+||+|||++|+.++..+ |..+..++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 45688999999999999999999987 44455555543
No 420
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0014 Score=69.05 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=35.7
Q ss_pred chhhHHHHHHHHHHHhhhC--CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 125 APAFMDKLVVHITKNFMSL--PNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 125 ~~~~~d~~~~~i~K~~l~~--~g~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+.|.|......+|.-+.. -|. .++||+||||||||++|+.+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcC---CcEEEecCCCCchHHhhhhhccc
Confidence 5678888888888887752 232 48999999999999999987654
No 421
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.52 E-value=0.064 Score=60.79 Aligned_cols=32 Identities=16% Similarity=-0.083 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
..+-++++||+|.|||+++...+...+ .+.-+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~ 62 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWY 62 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEE
Confidence 345799999999999999999887766 43333
No 422
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.52 E-value=0.012 Score=54.81 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
++...++|.||+|+|||+|++.++....
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3457899999999999999999999875
No 423
>PRK14974 cell division protein FtsY; Provisional
Probab=96.51 E-value=0.0095 Score=60.84 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~ 182 (428)
.|..++|.||||+|||+++..+|..+ |..+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 47899999999999999888888764 555555544
No 424
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.51 E-value=0.037 Score=55.07 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=29.8
Q ss_pred hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014244 140 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 140 ~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
++..+....|..+.|+|+=|+|||++.+.+-+++.-.
T Consensus 11 ~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 11 IIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3333444789999999999999999999998886554
No 425
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.014 Score=53.38 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+...+.|.||.|+|||+|.++++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344579999999999999999999874
No 426
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.50 E-value=0.0063 Score=65.84 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=74.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHH-----HHHHHHHhCCceEEEecccccc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR-----EAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~-----~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
..|||.|-||||||.+.+.+++-....++..--+ +.-+|-+....+.... +| ..+-.....|.+|||+|++
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa~v~KdPvtrEWTLEa-GALVLADkGvClIDEFDKM 558 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTAYVRKDPVTREWTLEA-GALVLADKGVCLIDEFDKM 558 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeEEEeeCCccceeeecc-CeEEEccCceEEeehhhhh
Confidence 4699999999999999999998865554442211 0111111100000000 00 0011334568899999997
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCc-cccCCCCCceEEEEeCCCC-------------CCChhhcCCCC
Q 014244 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-YNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 290 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~-~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR~gR 290 (428)
-...- .+....|-+|.+ ++... ....-..+..||+|+|-.. .|-.|+|. |
T Consensus 559 ndqDR----tSIHEAMEQQSI----------SISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--R 622 (854)
T KOG0477|consen 559 NDQDR----TSIHEAMEQQSI----------SISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--R 622 (854)
T ss_pred ccccc----chHHHHHHhcch----------hhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhh--h
Confidence 43211 111111211111 11000 0001235668999998621 45567775 8
Q ss_pred ceEEEe-----CCCHHHH--HHHHHHhccC
Q 014244 291 MEKFYW-----APTREDR--IGVCKGIFRN 313 (428)
Q Consensus 291 fd~~i~-----~P~~eeR--~~Il~~~~~~ 313 (428)
||..-. -|-.+++ .-++..|.+.
T Consensus 623 FDiLcVvkD~vd~~~De~lA~fVV~Sh~r~ 652 (854)
T KOG0477|consen 623 FDILCVVKDTVDPVQDEKLAKFVVGSHVRH 652 (854)
T ss_pred cceeeeeecccCchhHHHHHHHHHHhHhhc
Confidence 997765 5655555 4456666654
No 427
>PRK14529 adenylate kinase; Provisional
Probab=96.49 E-value=0.0022 Score=61.79 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=27.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~ 186 (428)
-|+|.||||+|||++|+.||+.+++..+ +.+++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 3788999999999999999999987654 444444
No 428
>PRK13975 thymidylate kinase; Provisional
Probab=96.49 E-value=0.0049 Score=56.93 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=25.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCe
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINP 177 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~ 177 (428)
+-|.|.|++|+|||++++.+++.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 4688999999999999999999998643
No 429
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.49 E-value=0.00099 Score=63.02 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 014244 152 LGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~el 173 (428)
++++|+||+|||++.+.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999986
No 430
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.48 E-value=0.0073 Score=53.78 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+++...+.|.||+|+|||+|.++++...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3455689999999999999999999875
No 431
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.48 E-value=0.017 Score=52.36 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+...++.||.|+|||.+.++++-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999976553
No 432
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.47 E-value=0.02 Score=60.50 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s 183 (428)
..|..++|+|++|+|||++|..+|..+ |..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 358899999999999999999998875 5566665554
No 433
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.46 E-value=0.0046 Score=63.01 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=43.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC--CeEEe-ccccccc------------C-CCCChHHHHHHHHHHHHHHHHhC
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMM-SAGELES------------G-NAGEPAKLIRQRYREAADIIKKG 211 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~--~~i~v-s~s~L~s------------~-~~Ge~~~~Ir~~F~~A~~~i~~~ 211 (428)
..+.+|+.|++|+|||++.+++..+..- .++.+ ...++.- . ..|...-...++.+.+ -..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~----LR~ 234 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEAC----LRL 234 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHH----hcc
Confidence 4568999999999999999999998643 22222 1112210 0 0111111233444544 688
Q ss_pred CceEEEeccc
Q 014244 212 KMCCLMINDL 221 (428)
Q Consensus 212 ~p~ILfIDEi 221 (428)
.|..|++.|+
T Consensus 235 ~PD~IivGEi 244 (332)
T PRK13900 235 RPDRIIVGEL 244 (332)
T ss_pred CCCeEEEEec
Confidence 8999999999
No 434
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0082 Score=67.92 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=90.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh----------CCCeEEecccccc--cCCCCChHHHHHHHHHHHHHHHH-hCCceEE
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMCCL 216 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el----------g~~~i~vs~s~L~--s~~~Ge~~~~Ir~~F~~A~~~i~-~~~p~IL 216 (428)
+.=+|.|.||+|||.++.-+|+.. +..++.++.+.+. .++-|+-+..++.+.+++ . .+...||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v----~~~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEV----ESGGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHH----hcCCCcEEE
Confidence 566899999999999999999883 3345555655444 346677778888887777 5 5567799
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-C----CCCCChhhcCCCCc
Q 014244 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-D----FSTLYAPLIRDGRM 291 (428)
Q Consensus 217 fIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN-~----~~~Ld~ALlR~gRf 291 (428)
||||+.-+.+.... +. ....++ .|--+ ....++-+|+||- . --.-||+|-| ||
T Consensus 285 figelh~lvg~g~~---~~-~~d~~n-lLkp~---------------L~rg~l~~IGatT~e~Y~k~iekdPalEr--rw 342 (898)
T KOG1051|consen 285 FLGELHWLVGSGSN---YG-AIDAAN-LLKPL---------------LARGGLWCIGATTLETYRKCIEKDPALER--RW 342 (898)
T ss_pred EecceeeeecCCCc---ch-HHHHHH-hhHHH---------------HhcCCeEEEecccHHHHHHHHhhCcchhh--Cc
Confidence 99999988776431 10 111111 11111 1123377888665 2 1245899988 99
Q ss_pred eEEEe-CCCHHHHHHHHHHhc
Q 014244 292 EKFYW-APTREDRIGVCKGIF 311 (428)
Q Consensus 292 d~~i~-~P~~eeR~~Il~~~~ 311 (428)
+.... .|+.++-..|++...
T Consensus 343 ~l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 343 QLVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred ceeEeccCcccchhhhhhhhh
Confidence 99888 999888776765544
No 435
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.45 E-value=0.0036 Score=58.47 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.|+.+.|.||+|+|||+|++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 47789999999999999999998875
No 436
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.43 E-value=0.014 Score=57.87 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~ 182 (428)
..|+.++|.||||+|||+++..+|..+ |..+..+.+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 457889999999999999999888775 555555544
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.43 E-value=0.0039 Score=59.71 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=30.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCC
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~ 189 (428)
.++|+||+|||||.+|-++|+++|.++|....-..+...
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l 41 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPEL 41 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccccc
Confidence 578999999999999999999999999998887776554
No 438
>PLN02199 shikimate kinase
Probab=96.41 E-value=0.0067 Score=60.80 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
...|+|.|.+|||||++++.+|+.+|++|+...
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 458999999999999999999999999998755
No 439
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.41 E-value=0.025 Score=51.62 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+...+.|.||+|+|||+|.++|+...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344579999999999999999999874
No 440
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.40 E-value=0.012 Score=54.50 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=48.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH---hCCCeEE---ecc----ccccc---------------CCCC----ChHHHHHHHH
Q 014244 151 ILGIWGGKGQGKSFQCELVFAK---MGINPIM---MSA----GELES---------------GNAG----EPAKLIRQRY 201 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~e---lg~~~i~---vs~----s~L~s---------------~~~G----e~~~~Ir~~F 201 (428)
-+.+|+++|.|||+.|-.+|-. .|..++. +++ ++... .|.. +.....++.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 3678899999999999988777 3555433 222 22100 0111 1224566778
Q ss_pred HHHHHHHHhCCceEEEeccccc
Q 014244 202 REAADIIKKGKMCCLMINDLDA 223 (428)
Q Consensus 202 ~~A~~~i~~~~p~ILfIDEiDa 223 (428)
+.|.+.+......+|++|||-.
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~ 108 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTY 108 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHH
Confidence 8887777788899999999853
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.40 E-value=0.0055 Score=61.60 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=43.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CeEEec-ccccccC----------C--CCChHHHHHHHHHHHHHHHHh
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELESG----------N--AGEPAKLIRQRYREAADIIKK 210 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs-~s~L~s~----------~--~Ge~~~~Ir~~F~~A~~~i~~ 210 (428)
++....+++.||+|+|||+++++++..+.- ..+.+. ..++.-. . .|...-...+.+..+ -.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~----Lr 216 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSC----LR 216 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHH----hc
Confidence 344578999999999999999999988532 222221 1111100 0 011111223344444 57
Q ss_pred CCceEEEecccc
Q 014244 211 GKMCCLMINDLD 222 (428)
Q Consensus 211 ~~p~ILfIDEiD 222 (428)
..|.+|++||+-
T Consensus 217 ~~pd~ii~gE~r 228 (308)
T TIGR02788 217 MRPDRIILGELR 228 (308)
T ss_pred CCCCeEEEeccC
Confidence 889999999994
No 442
>PF14516 AAA_35: AAA-like domain
Probab=96.38 E-value=0.26 Score=50.03 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEeccccccc
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES 187 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s 187 (428)
..-+.++||..+|||++...+.+.+ |...+.++...+.+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~ 72 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGS 72 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCC
Confidence 4578999999999999999887764 67777777666543
No 443
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.37 E-value=0.0064 Score=65.85 Aligned_cols=166 Identities=15% Similarity=0.255 Sum_probs=93.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC--CeEEecccccc-----cCCCCChHHHHHHHHHHH-HHHHHhCCceEEEecccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELE-----SGNAGEPAKLIRQRYREA-ADIIKKGKMCCLMINDLD 222 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~s~L~-----s~~~Ge~~~~Ir~~F~~A-~~~i~~~~p~ILfIDEiD 222 (428)
-+||.|.|||||-.++++|-+.... +|+.+++.-+- ++++|-.+......+.+. ...+....-..||+|||.
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIg 417 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIG 417 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhh
Confidence 4999999999999999999887543 68888876543 222221111111111111 001123344589999995
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCCceEEEe------
Q 014244 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW------ 296 (428)
Q Consensus 223 a~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~------ 296 (428)
.+. -.++.-|+.+|..-..+-+.|. ...-.|-||+||++.= ..|.+.|||-.-+|
T Consensus 418 d~p-------------~~~Qs~LLrVl~e~~v~p~g~~---~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 418 DMP-------------LALQSRLLRVLQEGVVTPLGGT---RIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred hch-------------HHHHHHHHHHHhhCceeccCCc---ceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 432 2233455566653333333343 2334567899998743 45788888864322
Q ss_pred ---CCCHHHHH---HHHHHhccC-----CCCCHhHHHHH-hcCCChhhHHh
Q 014244 297 ---APTREDRI---GVCKGIFRN-----DNVADDDIVKL-VDTFPGQSIDF 335 (428)
Q Consensus 297 ---~P~~eeR~---~Il~~~~~~-----~~l~~~~la~l-t~gfsgadL~~ 335 (428)
+|...+|. ..+..++.. -.++.+.++.+ ...++|-.-+.
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel 529 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIREL 529 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHH
Confidence 78777763 334444332 24555556555 45677765443
No 444
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.024 Score=58.93 Aligned_cols=102 Identities=19% Similarity=0.130 Sum_probs=63.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CeEEecccccccC------CCC--------ChHHHHHHHHHHHHHHH
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESG------NAG--------EPAKLIRQRYREAADII 208 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs~s~L~s~------~~G--------e~~~~Ir~~F~~A~~~i 208 (428)
|+-+-.-+|+-|.||.|||+|.-.+|..+.. .++++++.+-... ..| -.+.++..+.+..
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l---- 164 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAEL---- 164 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHH----
Confidence 4444467888999999999999988887532 6889998753221 111 0223334444444
Q ss_pred HhCCceEEEecccccccCCCCCCcccc-hhhHHHHHHHHHhhc
Q 014244 209 KKGKMCCLMINDLDAGAGRMGGTTQYT-VNNQMVNATLMNIAD 250 (428)
Q Consensus 209 ~~~~p~ILfIDEiDa~~~~r~~~~~~~-~~~~~v~~~L~~lld 250 (428)
...+|.+++||-|-.+....-.....+ ...|.....|+++..
T Consensus 165 ~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK 207 (456)
T COG1066 165 EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK 207 (456)
T ss_pred HhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH
Confidence 788999999999977755432111122 223556666666544
No 445
>PRK10867 signal recognition particle protein; Provisional
Probab=96.35 E-value=0.013 Score=61.84 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----CCCeEEeccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 183 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el----g~~~i~vs~s 183 (428)
.+|..+++.||+|+|||+++.-+|..+ |..+..+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 457899999999999999887777653 6666666654
No 446
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.35 E-value=0.0059 Score=59.65 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=41.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC---eEEec-ccccccCCC-------CChHHHHHHHHHHHHHHHHhCCceE
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMS-AGELESGNA-------GEPAKLIRQRYREAADIIKKGKMCC 215 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~---~i~vs-~s~L~s~~~-------Ge~~~~Ir~~F~~A~~~i~~~~p~I 215 (428)
+....+++.||+|+|||++.+++..++.-. ++.+. ..++.-... ........+.+..+ -...|.+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~----LR~~pD~ 200 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSA----LRQDPDV 200 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHH----TTS--SE
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHH----hcCCCCc
Confidence 345689999999999999999999996443 23222 222211100 00111222334444 5778999
Q ss_pred EEecccc
Q 014244 216 LMINDLD 222 (428)
Q Consensus 216 LfIDEiD 222 (428)
|+|+|+.
T Consensus 201 iiigEiR 207 (270)
T PF00437_consen 201 IIIGEIR 207 (270)
T ss_dssp EEESCE-
T ss_pred ccccccC
Confidence 9999993
No 447
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.35 E-value=0.029 Score=51.55 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+.+...++|.||+|+|||+|.++|+...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455689999999999999999999874
No 448
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.31 E-value=0.017 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCC
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
+.|.||+|+|||+|++.+++.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 5789999999999999999986543
No 449
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.29 E-value=0.0077 Score=62.88 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.+-|.|.|++|||||+|++++|+..|...+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 4679999999999999999999999887554
No 450
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.29 E-value=0.053 Score=64.57 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=91.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEeccccc--ccCCCCChHHHH--HHHHHHHH--HHHHhCCceEEEeccccccc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL--ESGNAGEPAKLI--RQRYREAA--DIIKKGKMCCLMINDLDAGA 225 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L--~s~~~Ge~~~~I--r~~F~~A~--~~i~~~~p~ILfIDEiDa~~ 225 (428)
+||-||.-+|||++...+|.++|..|+.++-.+= ...|+|....-= .--|++.. +.++ +.--|++||+.-.
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR--~GyWIVLDELNLA- 967 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR--RGYWIVLDELNLA- 967 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh--cCcEEEeeccccC-
Confidence 8999999999999999999999999999886543 223444311000 00122211 1122 3347899998432
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCCC------CCChhhcCCCCceEEEe-C
Q 014244 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFS------TLYAPLIRDGRMEKFYW-A 297 (428)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-~~~~~V~VI~TTN~~~------~Ld~ALlR~gRfd~~i~-~ 297 (428)
+ .-|...|..++|+-....++.-... .+.+...+.+|-|.|. -|..|++- ||-...+ -
T Consensus 968 p------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFlE~hFdd 1033 (4600)
T COG5271 968 P------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFLEMHFDD 1033 (4600)
T ss_pred c------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhHhhhccc
Confidence 1 2244567777776544444443222 2334445555556443 34556543 5544444 3
Q ss_pred CCHHHHHHHHHHhccCCCCCHhHHHHHhcCCChhhH
Q 014244 298 PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 333 (428)
Q Consensus 298 P~~eeR~~Il~~~~~~~~l~~~~la~lt~gfsgadL 333 (428)
-..++...|++.-+ .+.+.--+++++-|.+-.+
T Consensus 1034 ipedEle~ILh~rc---~iapSyakKiVeVyr~Ls~ 1066 (4600)
T COG5271 1034 IPEDELEEILHGRC---EIAPSYAKKIVEVYRGLSS 1066 (4600)
T ss_pred CcHHHHHHHHhccC---ccCHHHHHHHHHHHHHhhh
Confidence 33455666665433 5566666666666666444
No 451
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.29 E-value=0.023 Score=52.99 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 146 ~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
+.+...+.|.||+|+|||+|.++|+...
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455689999999999999999999876
No 452
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.25 E-value=0.0094 Score=66.50 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
++-.-+.+.|++|||||||+|.+..-
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33344999999999999999999886
No 453
>PRK05439 pantothenate kinase; Provisional
Probab=96.25 E-value=0.0069 Score=61.19 Aligned_cols=39 Identities=33% Similarity=0.490 Sum_probs=31.2
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014244 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 136 i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
..+.|+.....+.|..|.+.|+||+|||++|+.++..++
T Consensus 73 ~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 73 ALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555444666789999999999999999999998764
No 454
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.23 E-value=0.0047 Score=56.92 Aligned_cols=28 Identities=39% Similarity=0.597 Sum_probs=24.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEe
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~v 180 (428)
|+|+|+||+|||++++.+++ +|++++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 78999999999999999998 78766543
No 455
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0094 Score=56.89 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg 174 (428)
-|+|+|+||+|||++|+-+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 478999999999999999999973
No 456
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.22 E-value=0.0047 Score=57.18 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=25.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeE
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPI 178 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i 178 (428)
..+.|.||+|+|||++++.++...+..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 36889999999999999999998876543
No 457
>PRK13808 adenylate kinase; Provisional
Probab=96.20 E-value=0.0044 Score=63.15 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=26.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCeEEecccccc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~ 186 (428)
|+|+||||+|||++|+.||..+|+. .++.++++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~--~is~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV--QLSTGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--eecccHHH
Confidence 7899999999999999999999874 44444443
No 458
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.18 E-value=0.017 Score=57.40 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----C-CCeEEecccc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKM----G-INPIMMSAGE 184 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~el----g-~~~i~vs~s~ 184 (428)
.+..++|.||+|+|||+++..+|..+ | ..+..++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 46789999999999999999998875 4 5555565543
No 459
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.17 E-value=0.0046 Score=58.20 Aligned_cols=28 Identities=32% Similarity=0.672 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
.+..+.|.||+|+|||+|+++++..+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3456789999999999999999998763
No 460
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.17 E-value=0.012 Score=60.35 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccccccC-----C----CCChHHHHH
Q 014244 131 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----N----AGEPAKLIR 198 (428)
Q Consensus 131 ~~~~~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~L~s~-----~----~Ge~~~~Ir 198 (428)
+.++.-++++.- ...| +||.|..||||-++|+++-... ..+|+.+++..+-+. . .|..++.
T Consensus 214 k~~v~qA~k~Am---lDAP--LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~-- 286 (511)
T COG3283 214 KHVVEQAQKLAM---LDAP--LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKK-- 286 (511)
T ss_pred HHHHHHHHHhhc---cCCC--eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCcc--
Confidence 444444555432 2233 8999999999999999886663 557999998766321 1 1212221
Q ss_pred HHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 014244 199 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (428)
Q Consensus 199 ~~F~~A~~~i~~~~p~ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 278 (428)
..|+.| ...-+|+|||..+.+ .++.-|+.++++-+...+.+. .+-.-.|-|||||..+
T Consensus 287 GffE~A-------ngGTVlLDeIgEmSp-------------~lQaKLLRFL~DGtFRRVGee--~Ev~vdVRVIcatq~n 344 (511)
T COG3283 287 GFFEQA-------NGGTVLLDEIGEMSP-------------RLQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQVN 344 (511)
T ss_pred chhhhc-------cCCeEEeehhhhcCH-------------HHHHHHHHHhcCCceeecCCc--ceEEEEEEEEeccccc
Confidence 445554 345789999954432 234456666663332222221 1223578899999754
No 461
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.17 E-value=0.0081 Score=61.00 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC-----CCeEEec-ccccccC------CCCChHHHHHHHHHHHHHHHHhCCceEE
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELESG------NAGEPAKLIRQRYREAADIIKKGKMCCL 216 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg-----~~~i~vs-~s~L~s~------~~Ge~~~~Ir~~F~~A~~~i~~~~p~IL 216 (428)
.+++|+.|++|+|||++.++++.+.. ..++.+- ..++.-. +.....-....+.+.+ -...|..|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~a----LR~~PD~I 219 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKST----MRLRPDRI 219 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHH----hCCCCCEE
Confidence 46899999999999999999998862 2233322 2222210 0001111123334444 57899999
Q ss_pred Eeccc
Q 014244 217 MINDL 221 (428)
Q Consensus 217 fIDEi 221 (428)
++.|+
T Consensus 220 ivGEi 224 (323)
T PRK13833 220 IVGEV 224 (323)
T ss_pred EEeec
Confidence 99999
No 462
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.16 E-value=0.11 Score=53.72 Aligned_cols=50 Identities=20% Similarity=0.453 Sum_probs=39.4
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccc
Q 014244 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (428)
Q Consensus 135 ~i~K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~ 184 (428)
...+.++....-..|..|.|||..|||||++.+.+.++++.+.+.+++-+
T Consensus 16 ~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 16 RRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred HHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 34445554333467889999999999999999999999999888877544
No 463
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.16 E-value=0.0045 Score=57.68 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
.|.|.||||+|||++|+.++..++.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3789999999999999999999873
No 464
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.15 E-value=0.0069 Score=62.04 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=43.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC--CeEEec-cccccc--C------C----CCChHHHHHHHHHHHHHHHHhC
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELES--G------N----AGEPAKLIRQRYREAADIIKKG 211 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~--~~i~vs-~s~L~s--~------~----~Ge~~~~Ir~~F~~A~~~i~~~ 211 (428)
+..+.+|+.||+|+|||+++++++.+... ..+.+. ..++.- . + .|...-....+++.+ -..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~----LR~ 235 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQAS----LRM 235 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHH----hcC
Confidence 34568999999999999999999998643 222211 112210 0 0 011111233444444 577
Q ss_pred CceEEEeccc
Q 014244 212 KMCCLMINDL 221 (428)
Q Consensus 212 ~p~ILfIDEi 221 (428)
.|..|++.|+
T Consensus 236 ~pD~IivGEi 245 (344)
T PRK13851 236 RPDRILLGEM 245 (344)
T ss_pred CCCeEEEEee
Confidence 8999999998
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.14 E-value=0.013 Score=62.52 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=32.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~s~ 184 (428)
.|+.+...+|+.||||+|||+|+-.++.+. |-+.++++..+
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 477777889999999999999999888763 55667766543
No 466
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.13 E-value=0.0078 Score=58.67 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEeccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 183 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s 183 (428)
.|++....+|++|+||||||+++...+.+ .|.+.++++..
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 46777789999999999999999987766 36677777755
No 467
>PRK08356 hypothetical protein; Provisional
Probab=96.12 E-value=0.0063 Score=56.78 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~ 184 (428)
..++|.||||+|||++|+.+. +.|+. .++.++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence 468899999999999999995 56766 444443
No 468
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.12 E-value=0.0049 Score=56.27 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
.++|.||||+|||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998764
No 469
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.12 E-value=0.0062 Score=58.33 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=26.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
..+.|.||+|||||++++.+|+++++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 468899999999999999999999987664
No 470
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.10 E-value=0.027 Score=61.45 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.+++-.-+|+.||+|||||+|.|+||.-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4455567999999999999999999987
No 471
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.10 E-value=0.03 Score=65.90 Aligned_cols=174 Identities=13% Similarity=0.127 Sum_probs=103.6
Q ss_pred CCCcEEEEEcCCCchHHHH-HHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHHHHHHHHH-----------hCCce
Q 014244 147 KVPLILGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMC 214 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~L-A~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~~A~~~i~-----------~~~p~ 214 (428)
...++++++||||+|||+| +-++-+++-..++.++.+.-. .++..++-+=+.. .... ..+.-
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t-~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERET-EYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhc-eeeccCCeEEEccCcchhhe
Confidence 3467999999999999995 668888888888877665332 1122222221111 0001 11234
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-----CCCCCceEEEEeCCCCCC-----Chh
Q 014244 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDFSTL-----YAP 284 (428)
Q Consensus 215 ILfIDEiDa~~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-----~~~~~V~VI~TTN~~~~L-----d~A 284 (428)
|||.|||. +...+.-..+ ++ .-+|..++ .-.|+|.. ....++.+.+++|.+.+. +..
T Consensus 1566 VLFcDeIn-Lp~~~~y~~~-~v-----I~FlR~l~------e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYYPP-TV-----IVFLRPLV------ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred EEEeeccC-CccccccCCC-ce-----EEeeHHHH------HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence 89999998 3332221111 00 00111111 22356654 235788999999976543 345
Q ss_pred hcCCCCceEEEe--CCCHHHHHHHHHHhccCCCCCHhHHHHHhcCCChhhHHhHHHHHhh
Q 014244 285 LIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAR 342 (428)
Q Consensus 285 LlR~gRfd~~i~--~P~~eeR~~Il~~~~~~~~l~~~~la~lt~gfsgadL~~~~alra~ 342 (428)
++| -..+++ -|.......|..+++...-+-.++...+++.+.-+..+++..+|++
T Consensus 1633 f~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~ 1689 (3164)
T COG5245 1633 FIR---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDK 1689 (3164)
T ss_pred Hhc---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 664 334455 8999999999888887766666667777777777777776655553
No 472
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.09 E-value=0.0065 Score=56.22 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=26.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC---CCeEEeccccc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg---~~~i~vs~s~L 185 (428)
|++.|+||+|||++|+.++..++ .+...++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 68999999999999999999873 45555554443
No 473
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.08 E-value=0.064 Score=51.59 Aligned_cols=25 Identities=24% Similarity=-0.051 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFA 171 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~ 171 (428)
.....++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999999988
No 474
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.07 E-value=0.11 Score=49.95 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 014244 152 LGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~e 172 (428)
-+|+||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999988865
No 475
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.018 Score=63.37 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~e 172 (428)
.++|-..+-|.||+|.|||++|..+-+-
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4566689999999999999999998776
No 476
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.06 E-value=0.0045 Score=56.38 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~ 175 (428)
+.++|.||+|+|||++++.+++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46899999999999999999997644
No 477
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.05 E-value=0.01 Score=59.36 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=29.7
Q ss_pred HHhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 014244 138 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (428)
Q Consensus 138 K~~l~~~g~~~p~glLL~GpPGtGKT~LA~aIA~elg 174 (428)
+.|+.....+.|..+.|.||+|+||||+|+.+...+.
T Consensus 51 ~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 51 EQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455444557789999999999999999999887764
No 478
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.028 Score=52.41 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEeccccccc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES 187 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s 187 (428)
..|..|.|+|.+|+|||++|.+++++ .|.+.+.+.+..+..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 45678999999999999999999998 488999999887744
No 479
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.04 E-value=0.021 Score=56.04 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=24.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.|++.....=|+||||||||.||..+|-..
T Consensus 33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 33 GGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 467666677799999999999999888664
No 480
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.04 E-value=0.009 Score=60.58 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=42.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC-----CCeEEe-ccccccc--C----CCCChHHHHHHHHHHHHHHHHhCCceE
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMM-SAGELES--G----NAGEPAKLIRQRYREAADIIKKGKMCC 215 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg-----~~~i~v-s~s~L~s--~----~~Ge~~~~Ir~~F~~A~~~i~~~~p~I 215 (428)
..+.+++.|++|+|||+++++++.+.- ..++.+ ...++.- . +....+-...++++.+ -...|..
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~a----LR~~PD~ 222 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTT----LRMRPDR 222 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHH----hcCCCCE
Confidence 356899999999999999999998741 122221 2222210 0 0000111233444544 5788999
Q ss_pred EEeccc
Q 014244 216 LMINDL 221 (428)
Q Consensus 216 LfIDEi 221 (428)
|++.|+
T Consensus 223 IivGEi 228 (319)
T PRK13894 223 ILVGEV 228 (319)
T ss_pred EEEecc
Confidence 999999
No 481
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.04 E-value=0.0092 Score=60.96 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 58899999999999999999998
No 482
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.03 E-value=0.0095 Score=58.70 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=41.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC---CCeEEec-ccccccC-----CCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMG---INPIMMS-AGELESG-----NAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg---~~~i~vs-~s~L~s~-----~~Ge~~~~Ir~~F~~A~~~i~~~~p~ILfIDEi 221 (428)
.+++.||+|+|||++.+++..++. ..++.+. ..++.-. .+.+. ....|..+....-...|.+|+|+|+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~---~~~~~~~~l~~~lR~~PD~i~vgEi 158 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEK---AGLTFARGLRAILRQDPDIIMVGEI 158 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCc---CCcCHHHHHHHHhccCCCEEEeccC
Confidence 589999999999999999987763 2344432 2222111 01110 0012333333335788999999999
No 483
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.02 E-value=0.0071 Score=53.04 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
+....|+|+|+=|.|||++++.+++.+|..-...|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~S 47 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTS 47 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCC
Confidence 44568999999999999999999999998753333
No 484
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.01 E-value=0.0062 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=23.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-CCCeEE
Q 014244 152 LGIWGGKGQGKSFQCELVFAKM-GINPIM 179 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~el-g~~~i~ 179 (428)
|.+.|+||||||++|+.+++.+ ++.++.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~ 30 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIH 30 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEc
Confidence 6789999999999999999998 444443
No 485
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.01 E-value=0.0054 Score=65.01 Aligned_cols=137 Identities=20% Similarity=0.273 Sum_probs=76.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccCCCCChHHHHHHHHH-----HHHHHHHhCCceEEEecccccc
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR-----EAADIIKKGKMCCLMINDLDAG 224 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~~~Ge~~~~Ir~~F~-----~A~~~i~~~~p~ILfIDEiDa~ 224 (428)
..|||.|-||+-||.|.+.|.+-.-...+..-.+ |.-+|-++...++..- +. ..+-.....|..|||+|++
T Consensus 376 INicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAAVmkDpvTgEM~LEG-GALVLAD~GICCIDEfDKM 451 (721)
T KOG0482|consen 376 INICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAAVMKDPVTGEMVLEG-GALVLADGGICCIDEFDKM 451 (721)
T ss_pred eeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchhhhcCCCCCeeEecc-ceEEEccCceEeehhhhhh
Confidence 5799999999999999999988755544432211 1223333222221100 00 0001234568889999998
Q ss_pred cCCCCCCcccchhhHHH-HHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------------CCChhhcCCCC
Q 014244 225 AGRMGGTTQYTVNNQMV-NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 290 (428)
Q Consensus 225 ~~~r~~~~~~~~~~~~v-~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR~gR 290 (428)
.... .+...... ++++ .+.. .| ....-+.+.-|++++|-.. .||+|||. |
T Consensus 452 ~e~D-----RtAIHEVMEQQTI-SIaK-------AG-I~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLS--R 515 (721)
T KOG0482|consen 452 DESD-----RTAIHEVMEQQTI-SIAK-------AG-INTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--R 515 (721)
T ss_pred hhhh-----hHHHHHHHHhhhh-hhhh-------hc-cccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHH--h
Confidence 6432 11122222 2222 1111 11 1123356778888888432 68999997 9
Q ss_pred ceEEEe---CCCHHHHHHH
Q 014244 291 MEKFYW---APTREDRIGV 306 (428)
Q Consensus 291 fd~~i~---~P~~eeR~~I 306 (428)
||.... .|+++.=..+
T Consensus 516 FDll~Li~D~pdrd~D~~L 534 (721)
T KOG0482|consen 516 FDLLWLIQDRPDRDNDLRL 534 (721)
T ss_pred hhhhhhhccCCcccchHHH
Confidence 998655 7887765554
No 486
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.01 E-value=0.0072 Score=56.77 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=26.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 151 glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|.|+|++|+|||++++.+++.+|++++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 58999999999999999999988887764
No 487
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.00 E-value=0.0076 Score=55.72 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCC
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGIN 176 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~ 176 (428)
..+.|.||+|||||+++++++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 468899999999999999999998763
No 488
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.00 E-value=0.0065 Score=58.39 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
+..+.+.||||||||++|+.+|+++|++++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578999999999999999999999987765
No 489
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=95.97 E-value=0.023 Score=53.12 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 014244 150 LILGIWGGKGQGKSFQCELVFAK 172 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~e 172 (428)
..+||.||+|+|||.|-..+...
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHS
T ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Confidence 47999999999999999988886
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.97 E-value=0.0086 Score=55.69 Aligned_cols=33 Identities=30% Similarity=0.613 Sum_probs=25.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC-CCeEEecccc
Q 014244 152 LGIWGGKGQGKSFQCELVFAKMG-INPIMMSAGE 184 (428)
Q Consensus 152 lLL~GpPGtGKT~LA~aIA~elg-~~~i~vs~s~ 184 (428)
+.|.||+|||||+++++++..++ .....++...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 67999999999999999999873 2334444433
No 491
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.96 E-value=0.031 Score=56.66 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCeEEecc
Q 014244 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (428)
Q Consensus 147 ~~p~glLL~GpPGtGKT~LA~aIA~el---g~~~i~vs~ 182 (428)
+.|..++|.||+|+|||+++..+|..+ |..+..+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 357889999999999999999999885 444444443
No 492
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=95.96 E-value=0.0079 Score=57.18 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEE
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~ 179 (428)
.|..|.|+|++|||||++++.+++++|++++.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vid 36 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVC 36 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 46789999999999999999999999988655
No 493
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.96 E-value=0.029 Score=60.16 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=51.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecccccccC------CCC-----------------ChH-HH
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG------NAG-----------------EPA-KL 196 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~s~L~s~------~~G-----------------e~~-~~ 196 (428)
.|+.....++++||||+|||+++..++.+ .|-+.++++..+-.+. -.| .+. ..
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCC
Confidence 36777788999999999999999988765 3666666654321100 000 000 00
Q ss_pred HHHHHHHHHHHHHhCCceEEEecccccccC
Q 014244 197 IRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (428)
Q Consensus 197 Ir~~F~~A~~~i~~~~p~ILfIDEiDa~~~ 226 (428)
+...+......+...++.+++||-+..+..
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 112233333444677889999999877653
No 494
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.96 E-value=0.032 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.-.+|+||||+|||+++..++..+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 458899999999999999888874
No 495
>PLN02165 adenylate isopentenyltransferase
Probab=95.95 E-value=0.0084 Score=61.06 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCeEEec
Q 014244 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (428)
Q Consensus 149 p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs 181 (428)
...++|.||+|+|||+||..+|..++..++...
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 447999999999999999999999987666643
No 496
>PTZ00202 tuzin; Provisional
Probab=95.95 E-value=0.057 Score=57.16 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEeccc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s 183 (428)
.....|..+.|.||+|||||++++.+...++...+.++..
T Consensus 281 ~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 281 LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 3445678999999999999999999999988665555443
No 497
>COG0645 Predicted kinase [General function prediction only]
Probab=95.94 E-value=0.02 Score=52.74 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=42.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCeEEecccccccC--------------CC-CChHHHHHHHHHHHHHHHHhCCce
Q 014244 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--------------NA-GEPAKLIRQRYREAADIIKKGKMC 214 (428)
Q Consensus 150 ~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~s~L~s~--------------~~-Ge~~~~Ir~~F~~A~~~i~~~~p~ 214 (428)
..+|+.|-||+|||++|+.++..+|.-.+... .+... |. ..+.+--..++..|..++..+.+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD--~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~V 79 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSD--VIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSV 79 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehH--HHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 46899999999999999999999998666522 11111 11 112333345667776677777765
Q ss_pred E
Q 014244 215 C 215 (428)
Q Consensus 215 I 215 (428)
|
T Consensus 80 V 80 (170)
T COG0645 80 V 80 (170)
T ss_pred E
Confidence 4
No 498
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.93 E-value=0.039 Score=59.92 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 014244 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (428)
Q Consensus 145 g~~~p~glLL~GpPGtGKT~LA~aIA~el 173 (428)
.+++..-+.|.||+|+|||+|++.++...
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455679999999999999999999875
No 499
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.91 E-value=0.011 Score=56.08 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=30.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCeEEecc
Q 014244 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (428)
Q Consensus 144 ~g~~~p~glLL~GpPGtGKT~LA~aIA~e---lg~~~i~vs~ 182 (428)
.|++....++++||||||||+++..++.+ .|-..+.++.
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 37777789999999999999999987654 2445556554
No 500
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.91 E-value=0.0093 Score=60.17 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCeEEecc
Q 014244 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (428)
Q Consensus 148 ~p~glLL~GpPGtGKT~LA~aIA~elg~~~i~vs~ 182 (428)
.++.++|.||+|+|||++|..+|++++..++....
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 35689999999999999999999999887666544
Done!