BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014247
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 257 bits (657), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 200/361 (55%), Gaps = 41/361 (11%)
Query: 65 KPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTG 124
+P + D Y+ Y+ V +HEEMI DRVRT+ YR I++N + + GK V+DVG GTG
Sbjct: 36 RPRRTKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTG 95
Query: 125 ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXS 184
ILSIFCAQAGA+RVYAV+AS I QA EVV+ N L D+V VL G S
Sbjct: 96 ILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVS 155
Query: 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRNV- 242
EWMGY LL+ESML SV+ AR +WLK GGL+LP+ A L++ P++ D+ E + FW V
Sbjct: 156 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPIS--DQMLEWRLGFWSQVK 213
Query: 243 --YGIDMSAMMPLAKQCAF--EEPSVETITGENVLTWPHVVKHVDCYTIQI-HELES-IA 296
YG+DMS + A +C E V+ ++GE+VL P ++ + ELE+ +
Sbjct: 214 QHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVG 273
Query: 297 TTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANP 356
F+ AP+HGFA WF V F G + P
Sbjct: 274 GRFRCSCYGSAPMHGFAIWFQVTFP----------------GGESEKP------------ 305
Query: 357 NEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYAS 416
LVLST+P P THW+Q ++Y +P++VEQD + G + L S++N R + + L Y
Sbjct: 306 ---LVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLRYKV 362
Query: 417 G 417
G
Sbjct: 363 G 363
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 231 bits (589), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 184/339 (54%), Gaps = 37/339 (10%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
YF SY H GIHEEM++D VRT +YR AI+QN+ + K+V+DVGCGTGILS+F A+ GAK
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 137 RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXX-XXXXXXXXSEWMGYMLLYES 195
V VD S I A E+V+ N +DK+ +L G+ SEWMGY LLYES
Sbjct: 63 HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYES 122
Query: 196 MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAK 255
M+ +V+ ARD +L GGLI P ++++A + E +++W++VYG D S +PL
Sbjct: 123 MMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPL-- 180
Query: 256 QCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFW 315
EP V+T+ NV T + D T++I +L + + FK + + ++G W
Sbjct: 181 --VLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKSNFKLTAKRQDMINGIVTW 237
Query: 316 FDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQ 375
FD+ F P K KR P E ST P P THW+Q
Sbjct: 238 FDIVFPAP--------------------------KGKR--PVE---FSTGPHAPYTHWKQ 266
Query: 376 TMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEY 414
T+ YF D ++ E IEG +V S +++N R +NI + Y
Sbjct: 267 TIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISY 305
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 191/351 (54%), Gaps = 38/351 (10%)
Query: 72 DFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCA 131
D D YF SY H GIHEEM+KD+VRTE+YR I QN + KVV+DVGCGTGILS+F A
Sbjct: 5 DEDGVYFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAA 64
Query: 132 QAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXX-XXXXXXXXSEWMGYM 190
+AGAK+V AVD S+I QA ++++ N L D ++++ G+ SEWMGY
Sbjct: 65 KAGAKKVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYF 124
Query: 191 LLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAM 250
LL+ESML SV+ A+ ++L +GG + P T+ + V+ ++++ I FW +VYG +MS M
Sbjct: 125 LLFESMLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIAFWDDVYGFNMSCM 184
Query: 251 MPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLH 310
K+ E VE + + +++ P +KH+DC+T I +LE ++ F ++ A
Sbjct: 185 ----KKAVIPEAVVEVVDHKTLISDPCDIKHIDCHTTSISDLE-FSSDFTLRTTKTAMCT 239
Query: 311 GFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPP 370
A +FD+ F N + +V ST P+
Sbjct: 240 AVAGYFDIYF--------------------------------EKNCHNRVVFSTGPQSTK 267
Query: 371 THWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRSF 421
THW+QT+ P V+ + ++G + + ++K++ R + + L S +++
Sbjct: 268 THWKQTIFLLEKPFPVKAGEALKGKITVHKNKKDPRSLIVTLTLNSSTQTY 318
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/351 (33%), Positives = 189/351 (53%), Gaps = 38/351 (10%)
Query: 72 DFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCA 131
D D YF SY H GIHEEM+KD++RTE+YR I QN + KVV+DVGCGTGILS+F A
Sbjct: 24 DEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAA 83
Query: 132 QAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXX-XXXXXXXXSEWMGYM 190
+AGAK+V VD S+I QA ++++ N L D + ++ G+ SEWMGY
Sbjct: 84 KAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 143
Query: 191 LLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAM 250
LL+ESML SV+ A++++L +GG + P T+ + V+ +++++ I FW +VYG MS M
Sbjct: 144 LLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCM 203
Query: 251 MPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLH 310
K+ E VE + + +++ P +KH+DC+T I +LE ++ F K +
Sbjct: 204 ----KKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLE-FSSDFTLKITRTSMCT 258
Query: 311 GFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPP 370
A +FD+ F N + +V ST P+
Sbjct: 259 AIAGYFDIYF--------------------------------EKNCHNRVVFSTGPQSTK 286
Query: 371 THWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRSF 421
THW+QT+ P V+ + ++G V + ++K++ R + + L + +++
Sbjct: 287 THWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNNSTQTY 337
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 182/344 (52%), Gaps = 39/344 (11%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
YF SYAH GIHEEM+KD VRT TYR ++ N+ + KVV+DVG GTGIL +F A+AGA+
Sbjct: 25 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 84
Query: 137 RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXX-XXXXXXXXSEWMGYMLLYES 195
+V ++ S I+ A ++VKAN L V ++ G+ SEWMGY L YES
Sbjct: 85 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 144
Query: 196 MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAK 255
ML +V+ ARD+WL GLI P ATLY+ + I +W NVYG DMS + K
Sbjct: 145 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCI----K 200
Query: 256 QCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFW 315
A +EP V+ + + ++T ++K VD YT+++ +L + + F + +H +
Sbjct: 201 DVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDL-TFTSPFCLQVKRNDYVHALVAY 259
Query: 316 FDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQ 375
F++EF+ C K+ ST+PE P THW+Q
Sbjct: 260 FNIEFTR-------------------------CHKRTG--------FSTSPESPYTHWKQ 286
Query: 376 TMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGR 419
T+ Y D + V+ + I G++ + + +N R ++ ++ G+
Sbjct: 287 TVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQ 330
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 182/344 (52%), Gaps = 39/344 (11%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
YF SYAH GIHEEM+KD VRT TYR ++ N+ + KVV+DVG GTGIL +F A+AGA+
Sbjct: 22 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 81
Query: 137 RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXX-XXXXXXXXSEWMGYMLLYES 195
+V ++ S I+ A ++VKAN L V ++ G+ SEWMGY L YES
Sbjct: 82 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 141
Query: 196 MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAK 255
ML +V+ ARD+WL GLI P ATLY+ + I +W NVYG DMS + K
Sbjct: 142 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCI----K 197
Query: 256 QCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFW 315
A +EP V+ + + ++T ++K VD YT+++ +L + + F + +H +
Sbjct: 198 DVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDL-TFTSPFCLQVKRNDYVHALVAY 256
Query: 316 FDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQ 375
F++EF+ C K+ ST+PE P THW+Q
Sbjct: 257 FNIEFTR-------------------------CHKRTG--------FSTSPESPYTHWKQ 283
Query: 376 TMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGR 419
T+ Y D + V+ + I G++ + + +N R ++ ++ G+
Sbjct: 284 TVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQ 327
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 211 bits (537), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 182/344 (52%), Gaps = 39/344 (11%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
YF SYAH GIHEEM+KD VRT TYR ++ N+ + KVV+DVG GTGIL +F A+AGA+
Sbjct: 35 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 94
Query: 137 RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXX-XXXXXXXXSEWMGYMLLYES 195
+V ++ S I+ A ++VKAN L V ++ G+ SEWMGY L Y+S
Sbjct: 95 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQS 154
Query: 196 MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAK 255
ML +V+ ARD+WL GLI P ATLY+ + I +W NVYG DMS + K
Sbjct: 155 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCI----K 210
Query: 256 QCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFW 315
A +EP V+ + + ++T ++K VD YT+++ +L + + F + +H +
Sbjct: 211 DVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDL-TFTSPFCLQVKRNDYVHALVAY 269
Query: 316 FDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQ 375
F++EF+ C K+ ST+PE P THW+Q
Sbjct: 270 FNIEFTR-------------------------CHKRTG--------FSTSPESPYTHWKQ 296
Query: 376 TMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGR 419
T+ Y D + V+ + I G++ + + +N R ++ ++ G+
Sbjct: 297 TVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQ 340
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 211 bits (536), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 182/344 (52%), Gaps = 39/344 (11%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
YF SYAH GIHEE++KD VRT TYR ++ N+ + KVV+DVG GTGIL +F A+AGA+
Sbjct: 31 YFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 90
Query: 137 RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXX-XXXXXXXXSEWMGYMLLYES 195
+V ++ S I+ A ++VKAN L V ++ G+ SEWMGY L YES
Sbjct: 91 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 150
Query: 196 MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAK 255
ML +V+ ARD+WL GLI P ATLY+ + I +W NVYG DMS + K
Sbjct: 151 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCI----K 206
Query: 256 QCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFW 315
A +EP V+ + + ++T ++K VD YT+++ +L + + F + +H +
Sbjct: 207 DVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDL-TFTSPFCLQVKRNDYVHALVAY 265
Query: 316 FDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQ 375
F++EF+ C K+ ST+PE P THW+Q
Sbjct: 266 FNIEFTR-------------------------CHKRTG--------FSTSPESPYTHWKQ 292
Query: 376 TMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGR 419
T+ Y D + V+ + I G++ + + +N R ++ ++ G+
Sbjct: 293 TVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQ 336
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 190/370 (51%), Gaps = 53/370 (14%)
Query: 66 PATPC-TDFDVA-YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGT 123
P+ P + D A YF +Y+ + ++M+ DRVR + Y A+ QN+ EGK V+DVG G+
Sbjct: 15 PSAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGS 74
Query: 124 GILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXX 183
GIL+I+ AQAGA++VYAV+A+ +A A +VKANNL V V+ G
Sbjct: 75 GILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVII 134
Query: 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH--PDRYSESIDF--- 238
SEWMGY LL ESM SVI+ARDRWLK G++ PS+A +++AP+ DR D
Sbjct: 135 SEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMA 194
Query: 239 -WRNV-------YGIDMSAMM-PLAKQCAFEEPSVET-----ITGENVLTWPHVVKHVDC 284
W N YG+DM + P A++ E+ ++T + + ++ P +VK +DC
Sbjct: 195 DWHNFSDEIKSYYGVDMGVLTKPFAEEQ--EKYYIQTAMWNDLNPQQIIGTPTIVKEMDC 252
Query: 285 YTIQIHELESIATTF-KFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNH 343
T + E+E + + +M L GF WFDV+FS PA I
Sbjct: 253 LTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIE---------- 302
Query: 344 PMDGCQKKKRANPNEALVLSTAP-EDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSK 402
L+TAP E THW Q + +PI VE+ + +++S+SK
Sbjct: 303 ------------------LTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSK 344
Query: 403 ENARFMNIHL 412
EN R M I L
Sbjct: 345 ENHRLMEIEL 354
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 174/341 (51%), Gaps = 40/341 (11%)
Query: 75 VAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG 134
V YF Y ++ + M++D VRT TY+ AI+QN + + K+V+DVGCG+GILS F AQAG
Sbjct: 121 VQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG 180
Query: 135 AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMGYMLLYE 194
A+++YAV+AS +A A +VK+NNLTD+++V+ G+ SE MGYML E
Sbjct: 181 ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE 240
Query: 195 SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI---DFWR--NVYGIDMSA 249
ML S + A+ ++LK G + P+ +++AP T Y E +FW + +G+D+SA
Sbjct: 241 RMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSA 299
Query: 250 MMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPL 309
+ A F +P V+T +L V V+ + +L I FKF + +
Sbjct: 300 LRGAAVDEYFRQPVVDTF-DIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLV 358
Query: 310 HGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP 369
HG AFWFDV F +GS + LSTAP +P
Sbjct: 359 HGLAFWFDVAF----------------IGSIMT-----------------VWLSTAPTEP 385
Query: 370 PTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNI 410
THW Q F P+ + + G+ +L +K + ++I
Sbjct: 386 LTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISI 426
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 174/341 (51%), Gaps = 40/341 (11%)
Query: 75 VAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG 134
V YF Y ++ + M++D VRT TY+ AI+QN + + K+V+DVGCG+GILS F AQAG
Sbjct: 4 VQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG 63
Query: 135 AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMGYMLLYE 194
A+++YAV+AS +A A +VK+NNLTD+++V+ G+ SE MGYML E
Sbjct: 64 ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE 123
Query: 195 SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI---DFWR--NVYGIDMSA 249
ML S + A+ ++LK G + P+ +++AP T Y E +FW + +G+D+SA
Sbjct: 124 RMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSA 182
Query: 250 MMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPL 309
+ A F +P V+T +L V V+ + +L I FKF + +
Sbjct: 183 LRGAAVDEYFRQPVVDTF-DIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLV 241
Query: 310 HGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP 369
HG AFWFDV F +GS + LSTAP +P
Sbjct: 242 HGLAFWFDVAF----------------IGSIMT-----------------VWLSTAPTEP 268
Query: 370 PTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNI 410
THW Q F P+ + + G+ +L +K + ++I
Sbjct: 269 LTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISI 309
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 174/341 (51%), Gaps = 40/341 (11%)
Query: 75 VAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG 134
V YF Y ++ + M++D VRT TY+ AI+QN + + K+V+DVGCG+GILS F AQAG
Sbjct: 9 VQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG 68
Query: 135 AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMGYMLLYE 194
A+++YAV+AS +A A +VK+NNLTD+++V+ G+ SE MGYML E
Sbjct: 69 ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE 128
Query: 195 SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI---DFWR--NVYGIDMSA 249
ML S + A+ ++LK G + P+ +++AP T Y E +FW + +G+D+SA
Sbjct: 129 RMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSA 187
Query: 250 MMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPL 309
+ A F +P V+T +L V V+ + +L I FKF + +
Sbjct: 188 LRGAAVDEYFRQPVVDTF-DIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLV 246
Query: 310 HGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP 369
HG AFWFDV F +GS + LSTAP +P
Sbjct: 247 HGLAFWFDVAF----------------IGSIMT-----------------VWLSTAPTEP 273
Query: 370 PTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNI 410
THW Q F P+ + + G+ +L +K + ++I
Sbjct: 274 LTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISI 314
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 174/341 (51%), Gaps = 40/341 (11%)
Query: 75 VAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG 134
V YF Y ++ + M++D VRT TY+ AI+QN + + K+V+DVGCG+GILS F AQAG
Sbjct: 8 VQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG 67
Query: 135 AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMGYMLLYE 194
A+++YAV+AS +A A +VK+NNLTD+++V+ G+ SE MGYML E
Sbjct: 68 ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE 127
Query: 195 SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI---DFWR--NVYGIDMSA 249
ML S + A+ ++LK G + P+ +++AP T Y E +FW + +G+D+SA
Sbjct: 128 RMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSA 186
Query: 250 MMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPL 309
+ A F +P V+T +L V V+ + +L I FKF + +
Sbjct: 187 LRGAAVDEYFRQPVVDTF-DIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLV 245
Query: 310 HGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP 369
HG AFWFDV F +GS + LSTAP +P
Sbjct: 246 HGLAFWFDVAF----------------IGSIMT-----------------VWLSTAPTEP 272
Query: 370 PTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNI 410
THW Q F P+ + + G+ +L +K + ++I
Sbjct: 273 LTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISI 313
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 174/341 (51%), Gaps = 40/341 (11%)
Query: 75 VAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG 134
V YF Y ++ + M++D VRT TY+ AI+QN + + K+V+DVGCG+GILS F AQAG
Sbjct: 13 VQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG 72
Query: 135 AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMGYMLLYE 194
A+++YAV+AS +A A +VK+NNLTD+++V+ G+ SE MGYML E
Sbjct: 73 ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE 132
Query: 195 SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI---DFWR--NVYGIDMSA 249
ML S + A+ ++LK G + P+ +++AP T Y E +FW + +G+D+SA
Sbjct: 133 RMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSA 191
Query: 250 MMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPL 309
+ A F +P V+T +L V V+ + +L I FKF + +
Sbjct: 192 LRGAAVDEYFRQPVVDTF-DIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLV 250
Query: 310 HGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP 369
HG AFWFDV F +GS + LSTAP +P
Sbjct: 251 HGLAFWFDVAF----------------IGSIMT-----------------VWLSTAPTEP 277
Query: 370 PTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNI 410
THW Q F P+ + + G+ +L +K + ++I
Sbjct: 278 LTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISI 318
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 23/38 (60%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV 148
IEGKVV D+G GTG+LS GAK V V+ AV
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV 85
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDA-SDIAVQANEVVKA 156
E R A+ + + D+GCGTG ++F A ++ +D D NE
Sbjct: 32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVK 91
Query: 157 NNLTDKVIVLHGRXXXXXXXXXXXXXX-SEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
N D+V + G SE Y + +E + ++LK+GG I
Sbjct: 92 ANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKYLKKGGFIA 147
Query: 216 PSYATLYMAPVTHPDRYSESIDFWRNVY 243
S A+ + + +R +E DFW + Y
Sbjct: 148 VSEASWFTS-----ERPAEIEDFWMDAY 170
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDA-SDIAVQANEVVKA 156
E R A+ + + D+GCGTG ++F A ++ +D D NE
Sbjct: 38 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVK 97
Query: 157 NNLTDKVIVLHGRXXXXXXXXXXXXXX-SEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
N D+V + G SE Y + +E + ++LK+GG I
Sbjct: 98 ANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKYLKKGGFIA 153
Query: 216 PSYATLYMAPVTHPDRYSESIDFWRNVY 243
S A+ + + +R +E DFW + Y
Sbjct: 154 VSEASWFTS-----ERPAEIEDFWMDAY 176
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANN 158
T A + ++ ++ V DVG G+GIL+I + GAK V A D SD ++ A E A N
Sbjct: 47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALN 106
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASD 145
K V+D+GCG G I+ A+ GAK+V +D S+
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSE 77
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNL 159
RA IM+ S VVVD+ G G SI C AK++YA+D + A++ + +K N L
Sbjct: 186 RARIMKKVSL--NDVVVDMFAGVGPFSIAC--KNAKKIYAIDINPHAIELLKKNIKLNKL 241
Query: 160 TDKVI 164
K+I
Sbjct: 242 EHKII 246
>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
Length = 336
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNL 159
RA IM+ S VVVD+ G G SI C AK++YA+D + A++ + +K N L
Sbjct: 186 RARIMKKVSL--NDVVVDMFAGVGPFSIAC--KNAKKIYAIDINPHAIELLXKNIKLNKL 241
Query: 160 TDKVI 164
K+I
Sbjct: 242 EHKII 246
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD 145
I GK V ++G G G++SI AGA +V A D D
Sbjct: 77 LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD 112
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQANEVVKANN 158
+GKV+ DVGCG G+LS+ A+ K R+ D S AV+A+ A N
Sbjct: 197 KGKVL-DVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN 243
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEV-VKANNLTDKVIVLHG 168
V VDVGCGTG +++ A +RVYA+D + A+ E ++ + L D V + G
Sbjct: 36 VAVDVGCGTGGVTLELA-GRVRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXEG 89
>pdb|1R74|A Chain A, Crystal Structure Of Human Glycine N-Methyltransferase
pdb|1R74|B Chain B, Crystal Structure Of Human Glycine N-Methyltransferase
Length = 294
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD 145
R RT Y+A ++ + V+DV CGTG+ SI + G V +VDASD
Sbjct: 38 RSRTAEYKAWLLGLLRQHGCQRVLDVACGTGVDSIMLVEEGFS-VTSVDASD 88
>pdb|2AZT|A Chain A, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
pdb|2AZT|B Chain B, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
Length = 295
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD 145
R RT Y+A ++ + V+DV CGTG+ SI + G V +VDASD
Sbjct: 39 RSRTAEYKAWLLGLLRQHGCQRVLDVACGTGVDSIMLVEEGFS-VTSVDASD 89
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 188 GYMLLYESMLGSVITARDRWLKRG----GL------ILPSYATLYMAPVTHPDRYSESID 237
+M+ ++ SVI + ++LK+ G I+PS L + + + +S+
Sbjct: 258 NFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDL---ETLKKSMK 314
Query: 238 FWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQ 288
F+R V+G+D +++ LA+ E VE + + P V K D TIQ
Sbjct: 315 FYRTVFGVDETSLQRLARDWEIEVDQVEAM-----IKSPAVFKPTDEETIQ 360
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 188 GYMLLYESMLGSVITARDRWLKRG----GL------ILPSYATLYMAPVTHPDRYSESID 237
+M+ ++ SVI + ++LK+ G I+PS L + + + +S+
Sbjct: 258 NFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDL---ETLKKSMK 314
Query: 238 FWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQ 288
F+R V+G+D +++ LA+ E VE + + P V K D TIQ
Sbjct: 315 FYRTVFGVDETSLQRLARDWEIEVDQVEAM-----IKSPAVFKPTDEETIQ 360
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 188 GYMLLYESMLGSVITARDRWLKRG----GL------ILPSYATLYMAPVTHPDRYSESID 237
+M+ ++ SVI + ++LK+ G I+PS L + + + +S+
Sbjct: 258 NFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDL---ETLKKSMK 314
Query: 238 FWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQ 288
F+R V+G+D +++ LA+ E VE + + P V K D TIQ
Sbjct: 315 FYRTVFGVDETSLQRLARDWEIEVDQVEAM-----IKSPAVFKPTDEETIQ 360
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 188 GYMLLYESMLGSVITARDRWLKRG----GL------ILPSYATLYMAPVTHPDRYSESID 237
+M+ ++ SVI + ++LK+ G I+PS L + + + +S+
Sbjct: 258 NFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDL---ETLKKSMK 314
Query: 238 FWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQ 288
F+R V+G+D +++ LA+ E VE + + P V K D TIQ
Sbjct: 315 FYRTVFGVDETSLQRLARDWEIEVDQVEAM-----IKSPAVFKPTDEETIQ 360
>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
Length = 336
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNL 159
RA I + S VVVD G G SI C AK++YA+D + A++ + +K N L
Sbjct: 186 RARIXKKVSL--NDVVVDXFAGVGPFSIAC--KNAKKIYAIDINPHAIELLKKNIKLNKL 241
Query: 160 TDKVI 164
K+I
Sbjct: 242 EHKII 246
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVV 154
+ E RA + + + VVVDVGCG+G ++ A+ K VYA+D D A+ EV
Sbjct: 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGXTVEIAKR-CKFVYAIDYLDGAI---EVT 73
Query: 155 KAN 157
K N
Sbjct: 74 KQN 76
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 97/250 (38%), Gaps = 34/250 (13%)
Query: 87 HEEMIKDRVRTETYRAAIM--------QNQSFIEGKVVVDVGCGTGIL---SIFCAQAGA 135
+E KD V+ Y+ A+ + + +++ +G G G L S+ A+
Sbjct: 344 YEVFEKDPVKYSQYQQAVYKCLLDRVPEEEKETNIQILXVLGAGRGPLVNASLRAAKQAE 403
Query: 136 KR--VYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMGYMLLY 193
++ VYAV+ + AV E + +V V+ G SE +G
Sbjct: 404 RKIKVYAVEKNPNAVITLEGWRYEEWGSQVTVVSGDXREWKAPEKADIIVSELLGSFGDN 463
Query: 194 ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPL 253
E + + +LK G+ +P T Y+AP++ Y+E V P
Sbjct: 464 E-LSPECLDGAQHFLKDDGVSIPGEYTSYLAPISSSKLYNE-------VRACREKDRDPE 515
Query: 254 AKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIA-----TTFKFKSMMRAP 308
A+ FE P V + + L+ P + C+T + + +++ +
Sbjct: 516 AQ---FEXPYVVRLHNFHQLSDP-----LPCFTFHHPNKDDVIDNNRYCCLQYRVDLNTV 567
Query: 309 LHGFAFWFDV 318
LHGFA +F+
Sbjct: 568 LHGFAGYFNT 577
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD 145
R RT Y+A ++ V+DV CGTG+ SI + G V +VDASD
Sbjct: 38 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS-VMSVDASD 88
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD 145
R RT Y+A ++ V+DV CGTG+ SI + G V +VDASD
Sbjct: 38 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS-VTSVDASD 88
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD 145
R RT Y+A ++ V+DV CGTG+ SI + G V +VDASD
Sbjct: 38 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS-VTSVDASD 88
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD 145
R RT Y+A ++ V+DV CGTG+ SI + G V +VDASD
Sbjct: 39 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS-VTSVDASD 89
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVL 166
G V+D+GCG G + +AG Y VD +++++ + V+A N+ + V
Sbjct: 65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIN-DARVRARNMKRRFKVF 117
>pdb|3OPN|A Chain A, The Crystal Structure Of A Putative Hemolysin From
Lactococcus Lactis
Length = 232
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 142
I GK +D+G TG + Q GAK VYA+D
Sbjct: 36 INGKTCLDIGSSTGGFTDVXLQNGAKLVYALD 67
>pdb|3HP7|A Chain A, Putative Hemolysin From Streptococcus Thermophilus
Length = 291
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 142
+E + +D+G TG + Q GAK VYAVD
Sbjct: 84 VEDXITIDIGASTGGFTDVXLQNGAKLVYAVD 115
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAK 136
G+ ++D+GCGTG L+ AQ+GA+
Sbjct: 58 GEFILDLGCGTGQLTEKIAQSGAE 81
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHG 168
K V D+G G+G + + A+ V+A D S AV+ A + + + ++D+ V G
Sbjct: 123 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG 178
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHG 168
K V D+G G+G + + A+ V+A D S AV+ A + + + ++D+ V G
Sbjct: 125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG 180
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 95/250 (38%), Gaps = 34/250 (13%)
Query: 87 HEEMIKDRVRTETYRAAIM--------QNQSFIEGKVVVDVGCGTGIL---SIFCAQAGA 135
+E KD ++ Y+ AI + + +V++ +G G G L S+ A+
Sbjct: 324 YEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQAD 383
Query: 136 KRV--YAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMGYMLLY 193
+R+ YAV+ + AV E + +V V+ SE +G
Sbjct: 384 RRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADN 443
Query: 194 ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPL 253
E + + +LK G+ +P T ++AP++ Y+E V P
Sbjct: 444 E-LSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNE-------VRACREKDRDPE 495
Query: 254 AKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIA-----TTFKFKSMMRAP 308
A+ FE P V + + L+ P C+T + + T +F +
Sbjct: 496 AQ---FEMPYVVRLHNFHQLSAPQ-----PCFTFSHPNRDPMIDNNRYCTLEFPVEVNTV 547
Query: 309 LHGFAFWFDV 318
LHGFA +F+
Sbjct: 548 LHGFAGYFET 557
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHG 168
K V D+G G+G + + A+ V+A D S AV+ A + + + ++D+ V G
Sbjct: 135 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG 190
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 126 LSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKV 163
++I C GA + DA+DIA+ AN + A L K+
Sbjct: 139 MAILCGTVGALSAFYPDANDIAIPANRDLAAMRLIAKI 176
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
+F Y+ +G E + RA + + + G +VD+GCG G + + GA
Sbjct: 12 FFAGYSQLGRSIEGLDGAAEWPALRAXLPE----VGGLRIVDLGCGFGWFCRWAHEHGAS 67
Query: 137 RVYAVDASD 145
V +D S+
Sbjct: 68 YVLGLDLSE 76
>pdb|3G5T|A Chain A, Crystal Structure Of Trans-Aconitate 3-Methyltransferase
From Yeast
Length = 299
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDASDIAVQANEVVK 155
E K++VDVGCG G ++ AQ +++ D S ++ EV+K
Sbjct: 36 ERKLLVDVGCGPGTATLQXAQELKPFEQIIGSDLSATXIKTAEVIK 81
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 107 NQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKAN----NLTDK 162
N+ I +D+G G G LSI A+ + +++ A D + NE+ N NL D+
Sbjct: 38 NRFGITAGTCIDIGSGPGALSIALAK---QSDFSIRALDFSKHXNEIALKNIADANLNDR 94
Query: 163 VIVLHG 168
+ ++ G
Sbjct: 95 IQIVQG 100
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 99 TYRAAIMQNQSFI-----EGKVVVDVGCGTGILSIFCAQAGAK--RVYAVDASDIAVQAN 151
T + ++ Q+ +I EG VVD CG G + F A + RV+ D D A+ AN
Sbjct: 4 TIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAI-AN 62
Query: 152 EVVKAN--NLTDKVIVL 166
K NL D+V ++
Sbjct: 63 TTKKLTDLNLIDRVTLI 79
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 96 RTETYRAA--IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANE 152
+T +Y+A + + +EG+ ++D+ G G I+ A+ G V D+++ A++ A
Sbjct: 272 QTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFN-VKGFDSNEFAIEMARR 330
Query: 153 VVKANNL 159
V+ NN+
Sbjct: 331 NVEINNV 337
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ 149
AI+ + +G V+ D+G GTG S+ A G VYAV+ S + Q
Sbjct: 25 AIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVXRQ 70
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 96 RTETYRAA--IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANE 152
+T +Y+A + + +EG+ ++D+ G G I+ A+ G V D+++ A++ A
Sbjct: 272 QTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFN-VKGFDSNEFAIEMARR 330
Query: 153 VVKANNL 159
V+ NN+
Sbjct: 331 NVEINNV 337
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ 149
T Y + N I G+ V+D G G GIL+ GA+ V A D A++
Sbjct: 36 TAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIE 88
>pdb|2XBM|A Chain A, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
pdb|2XBM|B Chain B, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
pdb|2XBM|C Chain C, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
pdb|2XBM|D Chain D, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
Length = 263
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAV 141
+ +N EG+V+ D+GCG G S +C AG K+V V
Sbjct: 66 VERNMVIPEGRVI-DLGCGRGGWSYYC--AGLKKVTEV 100
>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
Length = 396
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHG 168
G V+DV TG +I A AGA V +D S A++ A E K N + D+ + G
Sbjct: 218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRXKFIVG 274
>pdb|3P8Z|A Chain A, Dengue Methyltransferase Bound To A Sam-Based Inhibitor
pdb|3P8Z|C Chain C, Dengue Methyltransferase Bound To A Sam-Based Inhibitor
pdb|3P97|A Chain A, Dengue 3 Ns5 Methyltransferase Bound To The Substrate
S-Adenosyl Methionine
pdb|3P97|C Chain C, Dengue 3 Ns5 Methyltransferase Bound To The Substrate
S-Adenosyl Methionine
Length = 267
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAV 141
+ +N EG+V+ D+GCG G S +C AG K+V V
Sbjct: 71 VERNMVIPEGRVI-DLGCGRGGWSYYC--AGLKKVTEV 105
>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
Clostridium Aminobutyricum And Coa
Length = 448
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 83 HVGIHEEMIKDRVRTETYRAAIMQ--NQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYA 140
H+GIH EMI D V + Y A ++ +S +GK+ + GT L F A +
Sbjct: 232 HLGIHSEMISDGV-VDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKP 290
Query: 141 VD 142
VD
Sbjct: 291 VD 292
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 25/65 (38%)
Query: 276 PHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPV 335
PHV + D Y + K K + + F W D T + A +H P V
Sbjct: 188 PHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAKSHAPEV 247
Query: 336 VVGSS 340
V+ SS
Sbjct: 248 VITSS 252
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 359 ALVLSTAPEDPPTHWQQTMIYFYDPIEVE 387
A+ L P+ P ++W T +YFYD VE
Sbjct: 157 AISLEEKPKQPKSNWAVTGLYFYDSKVVE 185
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 142
+E I + + EG VV+VG GTG L+ Q K++Y ++
Sbjct: 16 SEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIE 61
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 142
+E I + + EG VV+VG GTG L+ Q K++Y ++
Sbjct: 15 SEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIE 60
>pdb|2Z2L|C Chain C, Penicillin-Binding Protein 2x (Pbp2x) From Streptococcus
Pneumoniae
pdb|2Z2L|F Chain F, Penicillin-Binding Protein 2x (Pbp2x) From Streptococcus
Pneumoniae
pdb|2Z2M|C Chain C, Cefditoren-Acylated Penicillin-Binding Protein 2x (Pbp2x)
From Streptococcus Pneumoniae
pdb|2Z2M|F Chain F, Cefditoren-Acylated Penicillin-Binding Protein 2x (Pbp2x)
From Streptococcus Pneumoniae
pdb|2ZC3|C Chain C, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Biapenem) From Streptococcus Pneumoniae
pdb|2ZC3|F Chain F, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Biapenem) From Streptococcus Pneumoniae
pdb|2ZC4|C Chain C, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Tebipenem) From Streptococcus Pneumoniae
pdb|2ZC4|F Chain F, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Tebipenem) From Streptococcus Pneumoniae
Length = 125
Score = 28.5 bits (62), Expect = 7.2, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 29/114 (25%)
Query: 321 STPAISPAN-------NHIPPVVVGSSNNHPMDGCQKKKRANPN-EALVLSTAPEDPPTH 372
S ISP + N + P+VVG+ ++ K PN + L+LS E+ P
Sbjct: 15 SVKDISPGDLAEELRRNLVQPIVVGTGTKIKNSSAEEGKNLAPNQQVLILSDKAEEVPDM 74
Query: 373 WQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRSFVKESV 426
+ T ++ A+++NI LE+ G + K+ V
Sbjct: 75 YGWTK---------------------ETAETLAKWLNIELEFQGSGSTVQKQDV 107
>pdb|1PMD|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x)
Length = 675
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 29/114 (25%)
Query: 321 STPAISPAN-------NHIPPVVVGSSNNHPMDGCQKKKRANPN-EALVLSTAPEDPPTH 372
S ISP + N + P+VVG+ ++ K PN + L+LS E+ P
Sbjct: 565 SVKDISPGDLAEELRRNLVQPIVVGTGTKIKNSSAEEGKNLAPNQQVLILSDKAEEVPDM 624
Query: 373 WQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRSFVKESV 426
+ T E + L A+++NI LE+ G + K+ V
Sbjct: 625 YGWTK---------------ETAETL------AKWLNIELEFQGSGSTVQKQDV 657
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,299,727
Number of Sequences: 62578
Number of extensions: 418536
Number of successful extensions: 1003
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 83
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)