Query 014247
Match_columns 428
No_of_seqs 510 out of 3817
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:16:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499 Protein arginine N-met 100.0 4.6E-60 9.9E-65 443.8 28.3 311 73-419 21-332 (346)
2 KOG1500 Protein arginine N-met 100.0 4.6E-47 9.9E-52 348.8 21.2 311 73-418 138-453 (517)
3 PF05185 PRMT5: PRMT5 arginine 100.0 2.7E-40 5.8E-45 331.0 23.7 275 85-412 151-446 (448)
4 KOG0822 Protein kinase inhibit 99.9 2.3E-25 5.1E-30 216.8 17.0 276 85-413 333-624 (649)
5 PTZ00357 methyltransferase; Pr 99.9 1.7E-20 3.7E-25 187.5 23.0 296 85-414 640-1038(1072)
6 KOG1501 Arginine N-methyltrans 99.8 1.5E-20 3.2E-25 179.4 11.3 269 73-382 22-320 (636)
7 PLN02396 hexaprenyldihydroxybe 99.8 1.9E-18 4.1E-23 166.9 16.9 194 69-266 75-289 (322)
8 COG2226 UbiE Methylase involve 99.8 2E-18 4.3E-23 158.3 13.8 117 97-217 36-155 (238)
9 PF01209 Ubie_methyltran: ubiE 99.8 1.6E-18 3.5E-23 160.4 10.7 115 99-217 34-152 (233)
10 TIGR00452 methyltransferase, p 99.8 1.9E-17 4E-22 159.3 16.5 165 95-266 104-273 (314)
11 PRK15068 tRNA mo(5)U34 methylt 99.7 3.5E-17 7.6E-22 159.0 16.3 167 96-267 106-275 (322)
12 COG2227 UbiG 2-polyprenyl-3-me 99.7 7.1E-18 1.5E-22 151.9 9.9 146 69-221 11-164 (243)
13 PLN02244 tocopherol O-methyltr 99.7 5E-17 1.1E-21 159.5 16.7 157 111-270 117-282 (340)
14 PF12847 Methyltransf_18: Meth 99.7 4E-17 8.7E-22 134.0 12.9 107 112-218 1-111 (112)
15 COG2230 Cfa Cyclopropane fatty 99.7 3.2E-17 6.8E-22 152.9 13.5 174 98-275 58-232 (283)
16 PF08003 Methyltransf_9: Prote 99.7 5.6E-17 1.2E-21 151.2 13.4 169 91-265 94-266 (315)
17 PF02353 CMAS: Mycolic acid cy 99.7 3.5E-17 7.6E-22 154.9 12.0 168 99-273 49-224 (273)
18 PLN02233 ubiquinone biosynthes 99.7 3.2E-16 7E-21 148.2 18.3 165 98-266 59-248 (261)
19 TIGR02752 MenG_heptapren 2-hep 99.7 1.1E-15 2.4E-20 142.1 18.3 168 97-268 30-220 (231)
20 KOG1270 Methyltransferases [Co 99.7 9.6E-17 2.1E-21 145.4 10.3 183 75-263 39-246 (282)
21 PRK11036 putative S-adenosyl-L 99.7 2E-16 4.4E-21 149.4 12.8 152 111-266 43-207 (255)
22 PTZ00098 phosphoethanolamine N 99.6 4.7E-15 1E-19 140.4 15.9 157 102-269 42-205 (263)
23 KOG1540 Ubiquinone biosynthesi 99.6 5.9E-15 1.3E-19 132.9 15.0 115 98-215 86-211 (296)
24 PF13847 Methyltransf_31: Meth 99.6 4.1E-15 8.9E-20 129.2 12.8 106 111-220 2-112 (152)
25 PRK14103 trans-aconitate 2-met 99.6 2.6E-15 5.6E-20 141.8 11.9 147 103-262 20-180 (255)
26 PRK11207 tellurite resistance 99.6 4.7E-15 1E-19 134.4 13.1 109 105-216 23-132 (197)
27 smart00828 PKS_MT Methyltransf 99.6 4.2E-15 9.1E-20 137.6 12.8 146 114-270 1-148 (224)
28 PRK15451 tRNA cmo(5)U34 methyl 99.6 6.3E-15 1.4E-19 138.4 13.9 106 111-218 55-164 (247)
29 PF08241 Methyltransf_11: Meth 99.6 4.4E-15 9.6E-20 117.5 10.4 93 117-216 1-95 (95)
30 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.7E-14 3.7E-19 139.9 16.4 156 97-268 97-258 (340)
31 TIGR00477 tehB tellurite resis 99.6 4.1E-15 9E-20 134.6 10.9 110 103-216 21-131 (195)
32 PRK11873 arsM arsenite S-adeno 99.6 2.2E-14 4.8E-19 136.8 15.9 151 109-266 74-230 (272)
33 PF03848 TehB: Tellurite resis 99.6 1.5E-14 3.2E-19 128.7 13.3 109 104-216 22-131 (192)
34 PF13489 Methyltransf_23: Meth 99.6 1.5E-15 3.3E-20 132.6 6.2 145 99-262 8-159 (161)
35 PRK08317 hypothetical protein; 99.6 7.5E-14 1.6E-18 130.0 17.1 165 98-267 5-177 (241)
36 PRK00107 gidB 16S rRNA methylt 99.6 3.3E-14 7.2E-19 127.1 13.5 99 111-217 44-144 (187)
37 PLN02336 phosphoethanolamine N 99.6 4.1E-14 8.9E-19 145.6 16.1 155 104-268 258-416 (475)
38 TIGR00740 methyltransferase, p 99.6 2.9E-14 6.4E-19 133.3 13.0 107 111-219 52-162 (239)
39 TIGR00138 gidB 16S rRNA methyl 99.6 4.4E-14 9.5E-19 126.1 13.0 99 111-217 41-141 (181)
40 TIGR02021 BchM-ChlM magnesium 99.6 4.1E-14 8.9E-19 130.5 13.2 158 100-267 41-207 (219)
41 PRK00216 ubiE ubiquinone/menaq 99.6 2.1E-13 4.4E-18 127.2 17.6 115 100-217 39-157 (239)
42 PF06325 PrmA: Ribosomal prote 99.5 5.4E-14 1.2E-18 133.8 12.6 111 97-218 148-259 (295)
43 PF05401 NodS: Nodulation prot 99.5 6.3E-14 1.4E-18 123.2 11.5 141 100-258 31-172 (201)
44 COG2264 PrmA Ribosomal protein 99.5 6E-14 1.3E-18 132.1 11.5 114 97-218 149-263 (300)
45 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 1.9E-13 4.2E-18 126.0 14.7 162 99-267 26-211 (223)
46 PRK01683 trans-aconitate 2-met 99.5 8.9E-14 1.9E-18 131.6 12.5 109 101-218 20-130 (258)
47 PF05175 MTS: Methyltransferas 99.5 1.2E-13 2.6E-18 122.3 12.4 104 112-216 31-138 (170)
48 PRK12335 tellurite resistance 99.5 1.2E-13 2.6E-18 132.6 12.6 102 111-216 119-221 (287)
49 PRK10258 biotin biosynthesis p 99.5 1.1E-13 2.4E-18 130.4 11.6 110 99-218 29-140 (251)
50 PRK08287 cobalt-precorrin-6Y C 99.5 7.4E-13 1.6E-17 119.1 16.0 135 101-266 20-156 (187)
51 PRK05134 bifunctional 3-demeth 99.5 5.6E-13 1.2E-17 124.2 14.4 159 101-266 37-205 (233)
52 PRK00377 cbiT cobalt-precorrin 99.5 9.7E-13 2.1E-17 119.4 15.3 111 101-217 29-144 (198)
53 TIGR02469 CbiT precorrin-6Y C5 99.5 1E-12 2.2E-17 109.6 13.8 111 101-218 8-122 (124)
54 TIGR01983 UbiG ubiquinone bios 99.5 8.8E-13 1.9E-17 122.0 14.8 169 93-266 26-203 (224)
55 TIGR02716 C20_methyl_CrtF C-20 99.5 1.5E-12 3.3E-17 126.3 16.7 156 101-263 138-303 (306)
56 TIGR00537 hemK_rel_arch HemK-r 99.5 8.4E-13 1.8E-17 117.9 13.7 129 110-265 17-164 (179)
57 PF13649 Methyltransf_25: Meth 99.5 1.7E-13 3.7E-18 110.4 8.4 95 116-212 1-101 (101)
58 PRK00517 prmA ribosomal protei 99.5 1E-12 2.2E-17 123.7 14.8 129 99-265 108-237 (250)
59 PRK11705 cyclopropane fatty ac 99.5 7.3E-13 1.6E-17 131.7 13.9 161 101-274 156-320 (383)
60 COG4123 Predicted O-methyltran 99.5 3.4E-13 7.4E-18 123.9 10.4 108 109-216 41-168 (248)
61 TIGR00406 prmA ribosomal prote 99.5 1.2E-12 2.7E-17 125.5 14.6 101 111-218 158-259 (288)
62 PF13659 Methyltransf_26: Meth 99.4 4.9E-13 1.1E-17 110.5 10.1 104 113-216 1-113 (117)
63 PRK04266 fibrillarin; Provisio 99.4 1.8E-12 4E-17 119.4 14.1 140 107-268 67-212 (226)
64 PRK13944 protein-L-isoaspartat 99.4 1.4E-12 3.1E-17 118.9 13.4 109 99-216 59-171 (205)
65 PRK07580 Mg-protoporphyrin IX 99.4 2.6E-12 5.6E-17 119.3 14.8 146 111-268 62-216 (230)
66 PRK15001 SAM-dependent 23S rib 99.4 2.2E-12 4.8E-17 127.0 13.8 115 103-217 219-339 (378)
67 PRK14968 putative methyltransf 99.4 6.2E-12 1.3E-16 112.9 15.0 129 111-263 22-170 (188)
68 PF08242 Methyltransf_12: Meth 99.4 5.4E-14 1.2E-18 112.8 1.2 94 117-214 1-99 (99)
69 PRK05785 hypothetical protein; 99.4 3.6E-12 7.8E-17 117.9 13.0 89 112-212 51-141 (226)
70 TIGR00080 pimt protein-L-isoas 99.4 3.3E-12 7.1E-17 117.5 12.4 108 100-217 65-176 (215)
71 TIGR02072 BioC biotin biosynth 99.4 9.7E-12 2.1E-16 115.9 15.7 138 111-265 33-175 (240)
72 TIGR01177 conserved hypothetic 99.4 4.3E-12 9.3E-17 124.2 13.7 117 98-216 168-292 (329)
73 PRK13942 protein-L-isoaspartat 99.4 4.6E-12 9.9E-17 116.2 12.6 108 99-216 63-174 (212)
74 PRK14967 putative methyltransf 99.4 5.8E-12 1.2E-16 116.5 13.2 106 109-217 33-158 (223)
75 PRK00121 trmB tRNA (guanine-N( 99.4 3.4E-12 7.4E-17 116.1 11.4 106 112-218 40-156 (202)
76 TIGR03533 L3_gln_methyl protei 99.4 1.2E-11 2.6E-16 118.3 15.3 107 111-217 120-250 (284)
77 COG4076 Predicted RNA methylas 99.4 8.8E-13 1.9E-17 113.4 6.3 136 85-228 9-145 (252)
78 COG4106 Tam Trans-aconitate me 99.4 1.1E-12 2.4E-17 115.6 7.1 109 104-221 22-132 (257)
79 PLN02585 magnesium protoporphy 99.4 1.2E-11 2.6E-16 119.4 14.3 143 111-265 143-298 (315)
80 PRK06922 hypothetical protein; 99.3 9.2E-12 2E-16 128.2 13.6 107 110-218 416-537 (677)
81 PLN03075 nicotianamine synthas 99.3 1.3E-11 2.7E-16 116.9 13.5 105 111-218 122-233 (296)
82 KOG4300 Predicted methyltransf 99.3 5.9E-12 1.3E-16 110.2 9.5 99 114-216 78-180 (252)
83 COG2242 CobL Precorrin-6B meth 99.3 3.3E-11 7.1E-16 105.3 13.1 113 99-219 21-136 (187)
84 PRK14966 unknown domain/N5-glu 99.3 3.7E-11 8E-16 118.6 15.0 124 89-216 230-379 (423)
85 COG2519 GCD14 tRNA(1-methylade 99.3 2.1E-11 4.7E-16 111.1 12.2 109 102-218 84-195 (256)
86 TIGR03534 RF_mod_PrmC protein- 99.3 5.8E-11 1.2E-15 111.7 15.7 142 97-264 73-239 (251)
87 KOG1271 Methyltransferases [Ge 99.3 9.1E-12 2E-16 106.9 8.9 107 114-220 69-183 (227)
88 PRK11805 N5-glutamine S-adenos 99.3 3E-11 6.5E-16 116.7 13.7 105 113-217 134-262 (307)
89 PRK07402 precorrin-6B methylas 99.3 4.6E-11 1E-15 108.3 14.0 112 99-218 27-142 (196)
90 PRK09489 rsmC 16S ribosomal RN 99.3 2.9E-11 6.2E-16 118.3 13.0 111 103-216 187-301 (342)
91 TIGR03840 TMPT_Se_Te thiopurin 99.3 2.7E-11 5.9E-16 110.8 12.0 112 99-216 22-150 (213)
92 smart00138 MeTrc Methyltransfe 99.3 9.1E-12 2E-16 117.9 9.2 108 111-219 98-243 (264)
93 COG2813 RsmC 16S RNA G1207 met 99.3 2.9E-11 6.3E-16 113.4 12.4 114 101-216 147-264 (300)
94 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.7E-11 3.6E-16 110.9 10.5 106 112-218 16-132 (194)
95 TIGR00536 hemK_fam HemK family 99.3 3.6E-11 7.7E-16 115.3 13.3 122 96-217 97-243 (284)
96 COG4976 Predicted methyltransf 99.3 3.5E-12 7.6E-17 113.3 5.7 175 72-267 85-266 (287)
97 COG2518 Pcm Protein-L-isoaspar 99.3 4.1E-11 8.8E-16 107.0 12.5 106 100-216 60-167 (209)
98 PRK00312 pcm protein-L-isoaspa 99.3 4.6E-11 9.9E-16 109.7 13.3 107 100-217 66-174 (212)
99 PLN02336 phosphoethanolamine N 99.3 2.5E-11 5.5E-16 124.9 12.3 113 102-219 27-143 (475)
100 PTZ00146 fibrillarin; Provisio 99.3 8.9E-11 1.9E-15 110.7 14.6 112 98-217 115-236 (293)
101 PRK01544 bifunctional N5-gluta 99.3 5.5E-11 1.2E-15 122.4 14.5 132 86-217 88-268 (506)
102 PRK11783 rlmL 23S rRNA m(2)G24 99.3 2.8E-11 6.1E-16 129.5 12.6 108 111-218 537-656 (702)
103 PRK15128 23S rRNA m(5)C1962 me 99.3 4.7E-11 1E-15 118.9 12.8 109 111-219 219-340 (396)
104 PLN02781 Probable caffeoyl-CoA 99.3 4.9E-11 1.1E-15 110.8 12.1 104 110-219 66-179 (234)
105 TIGR03438 probable methyltrans 99.3 9E-11 2E-15 113.4 14.0 118 98-218 51-177 (301)
106 PRK13255 thiopurine S-methyltr 99.2 9.9E-11 2.2E-15 107.5 12.8 100 111-215 36-152 (218)
107 TIGR02081 metW methionine bios 99.2 9.7E-11 2.1E-15 106.0 11.7 147 111-268 12-169 (194)
108 TIGR03587 Pse_Me-ase pseudamin 99.2 1.1E-10 2.4E-15 106.2 12.1 97 111-217 42-141 (204)
109 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.1E-10 2.4E-15 114.6 12.6 106 109-218 119-235 (390)
110 PRK09328 N5-glutamine S-adenos 99.2 1.8E-10 3.9E-15 110.0 13.6 123 93-216 89-236 (275)
111 PRK10909 rsmD 16S rRNA m(2)G96 99.2 2E-10 4.3E-15 103.7 12.9 104 111-219 52-160 (199)
112 PRK14904 16S rRNA methyltransf 99.2 1.7E-10 3.6E-15 117.5 13.7 115 106-221 244-380 (445)
113 PF01135 PCMT: Protein-L-isoas 99.2 1.3E-10 2.9E-15 105.6 11.5 108 99-216 59-170 (209)
114 COG2263 Predicted RNA methylas 99.2 2.5E-10 5.4E-15 99.4 12.0 92 107-203 40-133 (198)
115 PF08704 GCD14: tRNA methyltra 99.2 1.6E-10 3.5E-15 107.2 11.5 108 101-216 29-144 (247)
116 PRK06202 hypothetical protein; 99.2 1.5E-10 3.2E-15 107.8 11.4 107 100-214 48-163 (232)
117 PRK10901 16S rRNA methyltransf 99.2 2.6E-10 5.7E-15 115.5 13.5 114 106-221 238-375 (427)
118 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.7E-10 5.8E-15 108.0 12.6 114 107-221 66-202 (264)
119 PRK14903 16S rRNA methyltransf 99.2 2.2E-10 4.7E-15 115.9 12.7 115 106-221 231-369 (431)
120 PRK11088 rrmA 23S rRNA methylt 99.2 1E-10 2.2E-15 111.6 9.8 101 100-217 74-180 (272)
121 PF07021 MetW: Methionine bios 99.2 2.3E-10 5E-15 100.6 11.1 146 103-269 6-170 (193)
122 PRK14902 16S rRNA methyltransf 99.2 2.4E-10 5.2E-15 116.4 13.0 118 103-221 241-382 (444)
123 PRK14901 16S rRNA methyltransf 99.2 2.6E-10 5.5E-15 115.8 12.9 116 105-221 245-387 (434)
124 PRK13943 protein-L-isoaspartat 99.2 3.9E-10 8.6E-15 109.1 13.6 107 100-216 68-178 (322)
125 TIGR00563 rsmB ribosomal RNA s 99.2 3.1E-10 6.8E-15 115.0 12.8 120 103-222 229-372 (426)
126 PRK04457 spermidine synthase; 99.2 2.1E-10 4.6E-15 108.4 10.8 107 111-217 65-176 (262)
127 COG2890 HemK Methylase of poly 99.1 3.7E-10 8E-15 107.5 12.3 124 90-217 89-237 (280)
128 TIGR03704 PrmC_rel_meth putati 99.1 5.3E-10 1.2E-14 105.1 13.1 118 96-217 69-215 (251)
129 PHA03411 putative methyltransf 99.1 2.3E-10 5E-15 106.8 10.4 128 111-261 63-209 (279)
130 PHA03412 putative methyltransf 99.1 1.9E-10 4E-15 105.0 9.5 102 112-219 49-164 (241)
131 KOG2361 Predicted methyltransf 99.1 9E-11 2E-15 105.5 7.2 148 115-265 74-236 (264)
132 PRK11188 rrmJ 23S rRNA methylt 99.1 2.4E-10 5.1E-15 104.5 10.1 97 110-217 49-164 (209)
133 cd02440 AdoMet_MTases S-adenos 99.1 4.9E-10 1.1E-14 89.0 10.4 99 115-217 1-103 (107)
134 TIGR00095 RNA methyltransferas 99.1 9.2E-10 2E-14 98.9 12.6 105 111-219 48-160 (189)
135 smart00650 rADc Ribosomal RNA 99.1 6.8E-10 1.5E-14 98.1 11.6 107 103-217 4-112 (169)
136 PRK00811 spermidine synthase; 99.1 8.9E-10 1.9E-14 105.4 12.6 108 111-218 75-191 (283)
137 PLN02476 O-methyltransferase 99.1 8E-10 1.7E-14 104.2 12.0 104 110-219 116-229 (278)
138 PRK03522 rumB 23S rRNA methylu 99.1 1.3E-09 2.9E-14 106.0 12.9 111 99-217 160-273 (315)
139 PF01596 Methyltransf_3: O-met 99.1 5.8E-10 1.3E-14 101.1 9.5 105 111-221 44-158 (205)
140 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.8E-09 3.9E-14 110.0 13.9 112 97-217 282-399 (443)
141 KOG3010 Methyltransferase [Gen 99.1 1.4E-10 3E-15 104.3 4.9 96 115-215 36-134 (261)
142 PF06080 DUF938: Protein of un 99.1 2.2E-09 4.7E-14 95.9 12.5 170 99-270 13-196 (204)
143 PRK01581 speE spermidine synth 99.1 2E-09 4.3E-14 104.4 12.8 151 111-280 149-311 (374)
144 COG4122 Predicted O-methyltran 99.1 1.2E-09 2.7E-14 99.0 10.7 105 110-220 57-168 (219)
145 PF03291 Pox_MCEL: mRNA cappin 99.0 1.1E-09 2.3E-14 106.5 10.6 108 112-219 62-187 (331)
146 TIGR00438 rrmJ cell division p 99.0 1.6E-09 3.4E-14 97.5 10.6 100 107-217 27-145 (188)
147 PF10672 Methyltrans_SAM: S-ad 99.0 1.5E-09 3.3E-14 102.8 10.9 109 111-219 122-239 (286)
148 KOG2904 Predicted methyltransf 99.0 2.5E-09 5.5E-14 97.7 11.4 127 91-218 124-285 (328)
149 COG1092 Predicted SAM-dependen 99.0 1.8E-09 3.8E-14 106.4 11.2 110 111-220 216-338 (393)
150 PF05724 TPMT: Thiopurine S-me 99.0 2.6E-09 5.6E-14 97.9 11.6 152 99-266 25-190 (218)
151 PLN02672 methionine S-methyltr 99.0 3.5E-09 7.7E-14 115.8 13.9 128 90-218 95-278 (1082)
152 PLN02232 ubiquinone biosynthes 99.0 1.2E-09 2.5E-14 95.7 8.3 125 139-266 1-147 (160)
153 PF05219 DREV: DREV methyltran 99.0 1.2E-09 2.6E-14 100.2 8.2 143 112-268 94-242 (265)
154 PF03602 Cons_hypoth95: Conser 99.0 2.5E-09 5.4E-14 95.4 9.7 105 111-218 41-153 (183)
155 KOG2899 Predicted methyltransf 99.0 2E-09 4.3E-14 96.8 8.9 107 110-217 56-208 (288)
156 PF10294 Methyltransf_16: Puta 99.0 2.1E-09 4.6E-14 95.2 9.0 105 109-216 42-154 (173)
157 PLN02366 spermidine synthase 99.0 7.4E-09 1.6E-13 99.7 12.7 109 111-219 90-207 (308)
158 TIGR00479 rumA 23S rRNA (uraci 99.0 6.6E-09 1.4E-13 105.6 13.1 114 96-217 276-395 (431)
159 TIGR02085 meth_trns_rumB 23S r 98.9 6.8E-09 1.5E-13 103.3 12.3 111 99-217 220-333 (374)
160 PRK13256 thiopurine S-methyltr 98.9 9.4E-09 2E-13 94.2 11.9 115 99-216 31-161 (226)
161 PLN02589 caffeoyl-CoA O-methyl 98.9 6.5E-09 1.4E-13 96.8 10.5 105 111-221 78-193 (247)
162 COG0742 N6-adenine-specific me 98.9 2.2E-08 4.8E-13 88.1 13.0 118 100-219 29-155 (187)
163 TIGR00417 speE spermidine synt 98.9 1.3E-08 2.9E-13 96.8 12.5 108 111-218 71-186 (270)
164 PF01170 UPF0020: Putative RNA 98.9 2.4E-08 5.3E-13 88.9 13.1 121 96-216 12-149 (179)
165 KOG1975 mRNA cap methyltransfe 98.9 6.2E-09 1.3E-13 97.3 9.5 109 111-219 116-238 (389)
166 PF02475 Met_10: Met-10+ like- 98.9 1E-08 2.2E-13 92.4 10.1 108 99-215 90-199 (200)
167 PRK03612 spermidine synthase; 98.9 8E-09 1.7E-13 107.0 10.3 108 111-218 296-415 (521)
168 COG2521 Predicted archaeal met 98.9 3.3E-09 7.2E-14 94.8 6.2 149 98-263 118-274 (287)
169 PTZ00338 dimethyladenosine tra 98.9 1.4E-08 3E-13 97.4 10.6 86 99-186 23-109 (294)
170 PF05148 Methyltransf_8: Hypot 98.8 1.2E-08 2.5E-13 90.8 8.2 112 111-264 71-183 (219)
171 KOG1541 Predicted protein carb 98.8 1.5E-08 3.2E-13 90.0 8.7 99 112-217 50-159 (270)
172 COG1041 Predicted DNA modifica 98.8 2.5E-08 5.4E-13 95.5 11.0 119 97-217 182-309 (347)
173 PRK14896 ksgA 16S ribosomal RN 98.8 2.2E-08 4.7E-13 94.7 10.5 84 99-187 16-100 (258)
174 PRK11727 23S rRNA mA1618 methy 98.8 9.8E-08 2.1E-12 92.1 15.0 76 112-187 114-198 (321)
175 PF12147 Methyltransf_20: Puta 98.8 1.9E-07 4.1E-12 86.9 15.9 157 101-263 124-295 (311)
176 PRK00274 ksgA 16S ribosomal RN 98.8 2.1E-08 4.5E-13 95.5 9.2 82 100-186 30-113 (272)
177 PRK04338 N(2),N(2)-dimethylgua 98.8 2.9E-08 6.4E-13 98.5 10.4 97 113-217 58-157 (382)
178 PF02390 Methyltransf_4: Putat 98.8 4.9E-08 1.1E-12 88.1 10.7 104 114-218 19-133 (195)
179 PF00891 Methyltransf_2: O-met 98.8 1E-07 2.2E-12 89.3 12.8 106 102-219 90-200 (241)
180 PF05891 Methyltransf_PK: AdoM 98.8 5.7E-08 1.2E-12 87.3 10.4 145 112-266 55-201 (218)
181 KOG3045 Predicted RNA methylas 98.8 4.2E-08 9.1E-13 89.1 9.3 111 111-265 179-290 (325)
182 TIGR00478 tly hemolysin TlyA f 98.8 3.3E-08 7.1E-13 91.0 8.9 99 99-215 62-168 (228)
183 PF07942 N2227: N2227-like pro 98.7 2.2E-07 4.8E-12 87.1 13.8 142 112-265 56-241 (270)
184 KOG2940 Predicted methyltransf 98.7 9.5E-09 2.1E-13 91.6 4.1 99 113-217 73-173 (325)
185 PRK04148 hypothetical protein; 98.7 2.4E-07 5.2E-12 77.4 11.8 76 100-184 4-83 (134)
186 TIGR02143 trmA_only tRNA (urac 98.7 1.2E-07 2.6E-12 93.6 11.7 109 98-217 184-310 (353)
187 PF01739 CheR: CheR methyltran 98.7 6.2E-08 1.3E-12 87.2 8.2 128 91-219 6-176 (196)
188 COG2265 TrmA SAM-dependent met 98.7 1.4E-07 3E-12 94.9 11.4 117 93-217 274-395 (432)
189 PRK05031 tRNA (uracil-5-)-meth 98.7 2E-07 4.2E-12 92.4 12.2 110 97-217 192-319 (362)
190 TIGR00755 ksgA dimethyladenosi 98.6 3.4E-07 7.3E-12 86.4 12.6 82 100-186 17-102 (253)
191 PLN02823 spermine synthase 98.6 2.9E-07 6.3E-12 89.7 10.9 107 111-217 102-219 (336)
192 KOG0820 Ribosomal RNA adenine 98.6 2.8E-07 6E-12 84.6 9.8 86 99-186 45-131 (315)
193 PRK11933 yebU rRNA (cytosine-C 98.6 6.1E-07 1.3E-11 91.2 12.7 112 109-221 110-245 (470)
194 COG0220 Predicted S-adenosylme 98.5 7E-07 1.5E-11 82.1 11.2 104 114-218 50-164 (227)
195 COG2520 Predicted methyltransf 98.5 4.3E-07 9.3E-12 87.8 10.2 107 101-216 179-287 (341)
196 COG0116 Predicted N6-adenine-s 98.5 8.7E-07 1.9E-11 86.3 12.3 126 94-219 173-345 (381)
197 COG3897 Predicted methyltransf 98.5 2.7E-07 5.8E-12 80.8 7.7 112 99-217 66-178 (218)
198 TIGR00308 TRM1 tRNA(guanine-26 98.5 5.8E-07 1.3E-11 88.9 10.9 97 113-217 45-146 (374)
199 PRK10611 chemotaxis methyltran 98.5 3.2E-07 7E-12 87.3 8.5 126 90-219 96-263 (287)
200 COG0030 KsgA Dimethyladenosine 98.5 6.1E-07 1.3E-11 83.4 9.9 83 100-186 18-103 (259)
201 PF02527 GidB: rRNA small subu 98.5 2E-06 4.3E-11 76.6 12.6 95 115-217 51-147 (184)
202 KOG3191 Predicted N6-DNA-methy 98.5 1.8E-06 3.8E-11 74.7 11.3 101 113-216 44-166 (209)
203 KOG3420 Predicted RNA methylas 98.5 4.7E-07 1E-11 75.2 6.8 83 102-186 38-122 (185)
204 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1.3E-06 2.7E-11 94.0 11.8 122 95-216 172-345 (702)
205 PF09445 Methyltransf_15: RNA 98.4 5.9E-07 1.3E-11 77.9 7.2 72 114-186 1-77 (163)
206 PF04816 DUF633: Family of unk 98.4 4.8E-06 1E-10 75.5 13.3 118 116-263 1-121 (205)
207 KOG1501 Arginine N-methyltrans 98.4 4.5E-07 9.7E-12 88.0 6.9 199 135-382 389-605 (636)
208 KOG1661 Protein-L-isoaspartate 98.4 1.4E-06 2.9E-11 77.2 8.9 98 110-216 80-191 (237)
209 COG1352 CheR Methylase of chem 98.4 1.6E-06 3.4E-11 81.5 9.9 129 90-219 71-242 (268)
210 KOG1663 O-methyltransferase [S 98.4 2E-06 4.3E-11 77.5 9.9 107 111-223 72-188 (237)
211 PF08123 DOT1: Histone methyla 98.4 2.9E-06 6.3E-11 76.9 11.0 109 104-216 34-156 (205)
212 COG3963 Phospholipid N-methylt 98.4 3E-06 6.6E-11 72.3 9.8 111 99-216 35-154 (194)
213 COG0421 SpeE Spermidine syntha 98.4 2.9E-06 6.3E-11 80.5 10.7 107 114-220 78-192 (282)
214 KOG2915 tRNA(1-methyladenosine 98.4 3.9E-06 8.5E-11 77.1 11.0 106 102-215 95-207 (314)
215 PF05958 tRNA_U5-meth_tr: tRNA 98.4 2.5E-06 5.5E-11 84.2 10.7 93 96-191 181-291 (352)
216 PF03141 Methyltransf_29: Puta 98.4 2.9E-07 6.3E-12 91.7 3.9 117 97-222 98-223 (506)
217 PF01564 Spermine_synth: Sperm 98.3 2.4E-06 5.1E-11 80.0 9.7 107 111-217 75-190 (246)
218 COG1189 Predicted rRNA methyla 98.3 2.5E-06 5.4E-11 77.3 8.8 106 99-216 66-176 (245)
219 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 4.3E-06 9.3E-11 78.0 9.3 148 110-265 54-238 (256)
220 COG0357 GidB Predicted S-adeno 98.2 8.9E-06 1.9E-10 73.8 10.4 95 113-215 68-165 (215)
221 PRK01544 bifunctional N5-gluta 98.2 1E-05 2.2E-10 83.7 10.2 106 112-218 347-462 (506)
222 PF01728 FtsJ: FtsJ-like methy 98.1 7.1E-06 1.5E-10 73.2 7.6 94 112-216 23-137 (181)
223 PRK00050 16S rRNA m(4)C1402 me 98.1 7.9E-06 1.7E-10 78.0 8.0 82 102-186 9-98 (296)
224 PRK11760 putative 23S rRNA C24 98.1 1.6E-05 3.4E-10 76.5 9.9 86 111-211 210-296 (357)
225 PRK00536 speE spermidine synth 98.1 2.2E-05 4.7E-10 73.7 10.5 101 111-222 71-175 (262)
226 KOG2187 tRNA uracil-5-methyltr 98.1 4.9E-06 1.1E-10 83.0 5.9 78 94-173 365-443 (534)
227 COG0144 Sun tRNA and rRNA cyto 98.1 5.6E-05 1.2E-09 74.6 13.0 116 106-222 150-292 (355)
228 PF00398 RrnaAD: Ribosomal RNA 98.0 1.9E-05 4E-10 74.9 8.9 85 98-186 16-105 (262)
229 PF02384 N6_Mtase: N-6 DNA Met 98.0 2.7E-05 5.9E-10 75.7 9.8 118 99-216 33-181 (311)
230 PF13679 Methyltransf_32: Meth 98.0 2.6E-05 5.7E-10 66.6 8.5 74 111-184 24-105 (141)
231 COG4262 Predicted spermidine s 98.0 2.8E-05 6.1E-10 74.3 9.1 112 112-223 289-412 (508)
232 TIGR03439 methyl_EasF probable 98.0 0.00016 3.4E-09 70.1 13.7 116 99-218 65-197 (319)
233 KOG2798 Putative trehalase [Ca 97.9 0.00013 2.8E-09 68.6 11.9 162 94-266 125-337 (369)
234 KOG3201 Uncharacterized conser 97.9 6.1E-06 1.3E-10 70.0 2.7 116 98-216 15-138 (201)
235 COG0293 FtsJ 23S rRNA methylas 97.9 3.7E-05 8E-10 68.9 7.6 96 110-216 43-157 (205)
236 KOG1269 SAM-dependent methyltr 97.9 2E-05 4.2E-10 77.5 6.4 106 110-218 108-215 (364)
237 PF11968 DUF3321: Putative met 97.9 5.4E-05 1.2E-09 68.0 8.4 118 114-264 53-179 (219)
238 PF13578 Methyltransf_24: Meth 97.9 1.1E-05 2.5E-10 65.1 3.7 98 117-218 1-105 (106)
239 KOG3987 Uncharacterized conser 97.9 3.9E-06 8.4E-11 74.0 0.9 138 112-263 112-257 (288)
240 PF09243 Rsm22: Mitochondrial 97.9 0.00015 3.3E-09 69.1 11.4 107 103-210 24-133 (274)
241 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00012 2.6E-09 70.1 10.6 114 107-221 80-222 (283)
242 COG0500 SmtA SAM-dependent met 97.8 0.0002 4.2E-09 60.7 10.9 98 116-219 52-156 (257)
243 TIGR01444 fkbM_fam methyltrans 97.8 7E-05 1.5E-09 63.8 7.5 58 115-173 1-60 (143)
244 PF01269 Fibrillarin: Fibrilla 97.8 0.00026 5.7E-09 64.0 11.3 112 98-217 56-177 (229)
245 COG2384 Predicted SAM-dependen 97.8 0.00077 1.7E-08 60.7 13.4 100 111-215 15-117 (226)
246 PRK10742 putative methyltransf 97.8 0.00012 2.6E-09 67.6 8.5 85 102-187 76-173 (250)
247 PF05971 Methyltransf_10: Prot 97.7 0.00031 6.7E-09 67.0 10.8 89 99-188 84-187 (299)
248 KOG3178 Hydroxyindole-O-methyl 97.7 0.00013 2.9E-09 70.0 7.7 95 114-219 179-276 (342)
249 TIGR02987 met_A_Alw26 type II 97.6 0.00021 4.5E-09 74.7 9.2 75 112-187 31-121 (524)
250 KOG1709 Guanidinoacetate methy 97.6 0.0006 1.3E-08 60.9 10.0 100 111-217 100-205 (271)
251 KOG2730 Methylase [General fun 97.6 4.8E-05 1E-09 68.0 3.1 74 112-186 94-173 (263)
252 KOG2352 Predicted spermine/spe 97.6 0.00061 1.3E-08 68.2 10.9 112 101-216 38-159 (482)
253 COG4798 Predicted methyltransf 97.5 0.00036 7.8E-09 61.3 6.9 147 105-261 41-200 (238)
254 PF03059 NAS: Nicotianamine sy 97.4 0.0014 3E-08 61.9 11.2 103 113-217 121-229 (276)
255 PHA01634 hypothetical protein 97.4 0.00088 1.9E-08 54.7 7.7 72 111-186 27-100 (156)
256 KOG1331 Predicted methyltransf 97.4 0.0001 2.2E-09 68.7 2.5 96 111-216 44-141 (293)
257 COG1889 NOP1 Fibrillarin-like 97.4 0.0016 3.4E-08 57.8 9.6 112 98-217 59-179 (231)
258 KOG1122 tRNA and rRNA cytosine 97.3 0.002 4.3E-08 63.2 10.4 115 107-222 236-375 (460)
259 PF02005 TRM: N2,N2-dimethylgu 97.2 0.0016 3.5E-08 64.7 8.8 99 112-217 49-153 (377)
260 PF06962 rRNA_methylase: Putat 97.1 0.0025 5.5E-08 53.7 8.4 80 137-217 1-91 (140)
261 KOG4058 Uncharacterized conser 97.1 0.0017 3.7E-08 54.5 7.2 105 106-217 66-171 (199)
262 PF04672 Methyltransf_19: S-ad 97.0 0.004 8.6E-08 58.3 9.4 122 97-220 52-192 (267)
263 PF01861 DUF43: Protein of unk 96.8 0.043 9.4E-07 50.5 13.8 106 103-215 35-146 (243)
264 TIGR00006 S-adenosyl-methyltra 96.8 0.0076 1.6E-07 57.9 9.2 84 101-186 9-100 (305)
265 PF04989 CmcI: Cephalosporin h 96.8 0.0045 9.9E-08 55.7 7.2 120 90-219 14-148 (206)
266 PF03141 Methyltransf_29: Puta 96.8 0.0016 3.6E-08 65.4 4.8 114 98-218 351-467 (506)
267 KOG4589 Cell division protein 96.7 0.0068 1.5E-07 53.1 7.7 96 110-216 67-182 (232)
268 PF04445 SAM_MT: Putative SAM- 96.7 0.006 1.3E-07 56.1 7.7 84 103-187 64-160 (234)
269 COG5459 Predicted rRNA methyla 96.7 0.0031 6.7E-08 60.4 5.9 113 103-218 104-225 (484)
270 KOG1227 Putative methyltransfe 96.7 0.00068 1.5E-08 63.5 1.3 76 111-186 193-270 (351)
271 PF07091 FmrO: Ribosomal RNA m 96.4 0.023 5E-07 52.6 9.2 72 111-184 104-177 (251)
272 KOG2793 Putative N2,N2-dimethy 96.4 0.019 4.1E-07 53.3 8.7 102 112-216 86-197 (248)
273 COG1064 AdhP Zn-dependent alco 96.1 0.035 7.5E-07 54.0 9.3 93 108-218 162-259 (339)
274 KOG2920 Predicted methyltransf 96.1 0.0047 1E-07 57.9 3.2 105 110-217 114-233 (282)
275 KOG2671 Putative RNA methylase 96.1 0.01 2.2E-07 56.9 5.3 78 109-187 205-293 (421)
276 KOG1099 SAM-dependent methyltr 95.9 0.013 2.8E-07 53.0 5.1 97 109-216 37-161 (294)
277 PF11599 AviRa: RRNA methyltra 95.9 0.07 1.5E-06 48.0 9.6 106 111-216 50-212 (246)
278 PRK09424 pntA NAD(P) transhydr 95.7 0.049 1.1E-06 56.2 9.1 96 110-217 162-284 (509)
279 TIGR00027 mthyl_TIGR00027 meth 95.7 0.15 3.3E-06 48.1 11.7 166 95-263 65-247 (260)
280 COG1867 TRM1 N2,N2-dimethylgua 95.7 0.054 1.2E-06 52.7 8.6 97 113-217 53-153 (380)
281 KOG3115 Methyltransferase-like 95.6 0.036 7.7E-07 49.4 6.6 103 114-216 62-181 (249)
282 KOG1596 Fibrillarin and relate 95.6 0.037 8E-07 50.5 6.7 111 99-217 140-260 (317)
283 KOG1253 tRNA methyltransferase 95.5 0.0061 1.3E-07 61.1 1.5 101 111-218 108-216 (525)
284 COG1063 Tdh Threonine dehydrog 95.5 0.028 6.1E-07 55.6 6.1 94 111-217 167-268 (350)
285 cd08283 FDH_like_1 Glutathione 95.3 0.03 6.6E-07 56.1 6.0 106 108-217 180-305 (386)
286 KOG0024 Sorbitol dehydrogenase 95.3 0.096 2.1E-06 50.1 8.8 96 109-218 166-273 (354)
287 COG0286 HsdM Type I restrictio 95.2 0.14 3E-06 53.0 10.3 116 98-213 172-321 (489)
288 cd00315 Cyt_C5_DNA_methylase C 95.0 0.045 9.8E-07 52.2 5.8 65 115-186 2-70 (275)
289 KOG1562 Spermidine synthase [A 94.8 0.082 1.8E-06 49.9 6.6 109 111-219 120-237 (337)
290 KOG2198 tRNA cytosine-5-methyl 94.6 0.31 6.7E-06 47.6 10.3 113 108-221 151-299 (375)
291 PF07757 AdoMet_MTase: Predict 94.5 0.062 1.4E-06 42.9 4.3 32 112-144 58-89 (112)
292 PRK09880 L-idonate 5-dehydroge 94.4 0.16 3.6E-06 49.8 8.3 95 110-217 167-265 (343)
293 PLN02668 indole-3-acetate carb 94.1 0.56 1.2E-05 46.7 11.1 22 196-217 215-236 (386)
294 PF10354 DUF2431: Domain of un 94.0 0.51 1.1E-05 41.3 9.6 130 118-268 2-154 (166)
295 COG0275 Predicted S-adenosylme 93.9 0.41 8.8E-06 45.6 9.2 85 100-186 11-104 (314)
296 PRK11524 putative methyltransf 93.6 0.25 5.5E-06 47.3 7.7 58 97-156 194-252 (284)
297 PF05711 TylF: Macrocin-O-meth 93.6 0.8 1.7E-05 42.8 10.6 122 94-220 56-214 (248)
298 PF03492 Methyltransf_7: SAM d 93.5 0.65 1.4E-05 45.6 10.5 107 111-217 15-182 (334)
299 KOG3924 Putative protein methy 93.3 0.3 6.4E-06 48.0 7.4 110 104-217 184-307 (419)
300 PF01795 Methyltransf_5: MraW 93.2 0.24 5.2E-06 47.7 6.6 83 102-186 10-101 (310)
301 PF03269 DUF268: Caenorhabditi 93.1 0.057 1.2E-06 46.3 2.1 96 113-218 2-111 (177)
302 PF07279 DUF1442: Protein of u 93.1 1.4 3.1E-05 39.9 11.0 109 100-216 29-146 (218)
303 COG3129 Predicted SAM-dependen 92.8 0.48 1E-05 43.2 7.4 75 112-187 78-162 (292)
304 PRK13699 putative methylase; P 92.7 0.47 1E-05 43.8 7.7 57 98-156 150-207 (227)
305 COG1568 Predicted methyltransf 92.6 0.43 9.3E-06 44.7 7.0 97 109-211 149-250 (354)
306 TIGR00561 pntA NAD(P) transhyd 92.5 0.36 7.9E-06 49.8 7.3 93 111-215 162-281 (511)
307 PF01555 N6_N4_Mtase: DNA meth 92.4 0.34 7.4E-06 44.1 6.4 56 95-152 175-231 (231)
308 TIGR03451 mycoS_dep_FDH mycoth 91.8 0.33 7.1E-06 48.0 5.9 97 108-217 172-275 (358)
309 cd08281 liver_ADH_like1 Zinc-d 91.7 0.37 8E-06 47.9 6.1 96 108-217 187-289 (371)
310 KOG2651 rRNA adenine N-6-methy 91.7 0.6 1.3E-05 45.7 7.1 54 100-153 141-195 (476)
311 KOG2078 tRNA modification enzy 91.4 0.17 3.6E-06 50.1 3.1 62 111-173 248-311 (495)
312 TIGR03366 HpnZ_proposed putati 91.3 0.57 1.2E-05 44.5 6.8 95 110-217 118-217 (280)
313 cd00401 AdoHcyase S-adenosyl-L 91.1 1.4 3E-05 44.4 9.6 97 100-217 188-288 (413)
314 PF05206 TRM13: Methyltransfer 91.1 2.1 4.5E-05 40.4 10.1 112 101-215 7-137 (259)
315 cd08239 THR_DH_like L-threonin 90.9 0.59 1.3E-05 45.6 6.7 96 108-216 159-260 (339)
316 cd08237 ribitol-5-phosphate_DH 90.9 0.92 2E-05 44.5 8.0 91 110-217 161-255 (341)
317 PF06859 Bin3: Bicoid-interact 90.9 0.23 4.9E-06 39.9 2.9 40 178-217 1-43 (110)
318 TIGR01202 bchC 2-desacetyl-2-h 90.7 0.69 1.5E-05 44.7 6.9 85 111-217 143-230 (308)
319 cd08230 glucose_DH Glucose deh 90.6 0.8 1.7E-05 45.1 7.3 92 110-216 170-267 (355)
320 PF00145 DNA_methylase: C-5 cy 90.5 0.51 1.1E-05 45.8 5.8 64 115-186 2-69 (335)
321 PF02636 Methyltransf_28: Puta 90.4 1.2 2.5E-05 41.9 7.9 70 113-186 19-103 (252)
322 COG4301 Uncharacterized conser 90.3 8.4 0.00018 35.8 12.7 107 110-218 76-193 (321)
323 cd08254 hydroxyacyl_CoA_DH 6-h 90.0 0.64 1.4E-05 45.1 6.0 97 107-217 160-262 (338)
324 cd05188 MDR Medium chain reduc 89.6 0.95 2E-05 42.0 6.6 93 110-216 132-230 (271)
325 PLN02740 Alcohol dehydrogenase 89.5 2.1 4.6E-05 42.7 9.4 92 108-216 194-298 (381)
326 PF04072 LCM: Leucine carboxyl 89.1 0.98 2.1E-05 40.1 6.0 109 95-204 60-182 (183)
327 TIGR00675 dcm DNA-methyltransf 88.9 0.49 1.1E-05 46.1 4.2 64 116-186 1-67 (315)
328 PRK01747 mnmC bifunctional tRN 88.7 1.3 2.9E-05 47.7 7.7 105 111-215 56-203 (662)
329 COG0686 Ald Alanine dehydrogen 88.1 1.5 3.3E-05 42.0 6.6 94 113-215 168-265 (371)
330 PRK10309 galactitol-1-phosphat 87.9 1.3 2.8E-05 43.4 6.5 96 109-217 157-259 (347)
331 cd08232 idonate-5-DH L-idonate 87.4 2.6 5.6E-05 41.0 8.3 90 111-216 164-260 (339)
332 TIGR02354 thiF_fam2 thiamine b 87.3 5.1 0.00011 36.2 9.5 34 111-144 19-54 (200)
333 PF02737 3HCDH_N: 3-hydroxyacy 87.0 3.7 8.1E-05 36.3 8.4 98 115-221 1-117 (180)
334 PRK11524 putative methyltransf 86.9 0.71 1.5E-05 44.2 3.9 55 163-217 9-79 (284)
335 TIGR02356 adenyl_thiF thiazole 86.8 3.9 8.4E-05 37.0 8.5 34 111-144 19-54 (202)
336 PF00107 ADH_zinc_N: Zinc-bind 86.8 1.8 3.9E-05 35.5 5.9 81 122-219 1-90 (130)
337 PLN02827 Alcohol dehydrogenase 86.4 3.4 7.4E-05 41.2 8.6 95 108-216 189-293 (378)
338 PRK08644 thiamine biosynthesis 86.2 5.1 0.00011 36.6 8.9 75 111-185 26-124 (212)
339 TIGR02818 adh_III_F_hyde S-(hy 86.0 4.5 9.7E-05 40.1 9.2 95 108-216 181-285 (368)
340 PRK05854 short chain dehydroge 85.7 6 0.00013 38.2 9.8 75 111-186 12-101 (313)
341 PLN03154 putative allyl alcoho 84.8 4.4 9.6E-05 39.9 8.5 96 107-216 153-256 (348)
342 PF05430 Methyltransf_30: S-ad 84.7 1.6 3.4E-05 36.2 4.4 79 162-267 32-112 (124)
343 TIGR02822 adh_fam_2 zinc-bindi 84.5 7.6 0.00016 37.8 9.9 90 108-217 161-253 (329)
344 cd00757 ThiF_MoeB_HesA_family 84.5 5.5 0.00012 36.7 8.5 75 111-185 19-118 (228)
345 COG1565 Uncharacterized conser 84.4 3.8 8.1E-05 40.2 7.4 46 111-156 76-131 (370)
346 PRK05786 fabG 3-ketoacyl-(acyl 84.4 12 0.00026 34.0 10.8 71 112-186 4-89 (238)
347 PF10237 N6-adenineMlase: Prob 84.2 5.1 0.00011 34.9 7.5 106 98-219 13-124 (162)
348 COG3510 CmcI Cephalosporin hyd 84.1 4.5 9.8E-05 36.0 7.1 117 94-222 55-184 (237)
349 COG4627 Uncharacterized protei 84.1 0.26 5.5E-06 42.1 -0.6 42 177-221 46-89 (185)
350 cd08285 NADP_ADH NADP(H)-depen 84.1 1.8 3.8E-05 42.5 5.3 96 108-216 162-264 (351)
351 cd08278 benzyl_alcohol_DH Benz 83.8 2 4.2E-05 42.6 5.5 91 109-216 183-283 (365)
352 KOG1201 Hydroxysteroid 17-beta 83.8 7.8 0.00017 37.0 9.0 73 110-186 35-122 (300)
353 COG0270 Dcm Site-specific DNA 83.6 2 4.3E-05 42.1 5.4 67 114-186 4-75 (328)
354 cd05278 FDH_like Formaldehyde 83.4 2.4 5.2E-05 41.3 5.9 95 109-216 164-265 (347)
355 TIGR02825 B4_12hDH leukotriene 83.3 3.4 7.3E-05 40.0 6.9 96 106-216 132-235 (325)
356 PRK12475 thiamine/molybdopteri 83.3 2.8 6E-05 41.3 6.2 75 111-185 22-123 (338)
357 cd08277 liver_alcohol_DH_like 83.2 7.4 0.00016 38.5 9.4 96 108-217 180-285 (365)
358 KOG0022 Alcohol dehydrogenase, 82.9 2.9 6.4E-05 40.1 5.8 47 107-153 187-236 (375)
359 PRK15001 SAM-dependent 23S rib 82.4 12 0.00027 37.3 10.4 93 115-216 47-140 (378)
360 TIGR02819 fdhA_non_GSH formald 82.4 2.6 5.6E-05 42.3 5.8 100 109-216 182-297 (393)
361 cd08300 alcohol_DH_class_III c 82.3 9.6 0.00021 37.7 9.8 95 108-216 182-286 (368)
362 cd05285 sorbitol_DH Sorbitol d 82.3 3.9 8.4E-05 39.9 6.9 97 107-216 157-263 (343)
363 COG1255 Uncharacterized protei 82.2 11 0.00024 30.6 8.0 84 114-215 15-101 (129)
364 cd08236 sugar_DH NAD(P)-depend 82.2 3.6 7.7E-05 40.1 6.6 93 108-216 155-256 (343)
365 PF06460 NSP13: Coronavirus NS 82.2 4.1 8.9E-05 38.0 6.3 108 97-217 45-168 (299)
366 cd01065 NAD_bind_Shikimate_DH 81.5 13 0.00027 31.6 9.1 81 100-186 6-89 (155)
367 COG0604 Qor NADPH:quinone redu 81.3 3.4 7.3E-05 40.4 6.0 97 106-217 136-240 (326)
368 KOG0821 Predicted ribosomal RN 81.3 4.2 9.2E-05 36.9 5.9 72 100-173 38-110 (326)
369 COG2933 Predicted SAM-dependen 81.1 5 0.00011 37.5 6.5 87 110-211 209-296 (358)
370 cd08293 PTGR2 Prostaglandin re 81.1 6 0.00013 38.5 7.8 93 110-216 150-252 (345)
371 PRK13699 putative methylase; P 81.0 1.8 3.8E-05 40.0 3.7 54 163-216 2-70 (227)
372 cd08294 leukotriene_B4_DH_like 81.0 3 6.5E-05 40.2 5.6 95 106-216 137-239 (329)
373 PRK07688 thiamine/molybdopteri 81.0 6.4 0.00014 38.7 7.8 75 111-185 22-123 (339)
374 TIGR00936 ahcY adenosylhomocys 81.0 12 0.00025 37.8 9.7 93 102-216 183-280 (406)
375 PRK05708 2-dehydropantoate 2-r 81.0 6.2 0.00013 38.1 7.7 93 114-216 3-102 (305)
376 cd08261 Zn_ADH7 Alcohol dehydr 80.9 2.6 5.6E-05 41.0 5.1 95 108-216 155-256 (337)
377 PRK10458 DNA cytosine methylas 80.6 8.4 0.00018 39.6 8.7 59 113-174 88-147 (467)
378 COG0373 HemA Glutamyl-tRNA red 80.5 11 0.00023 38.0 9.2 94 105-206 170-267 (414)
379 cd08231 MDR_TM0436_like Hypoth 80.3 10 0.00022 37.2 9.2 93 111-216 176-278 (361)
380 cd08234 threonine_DH_like L-th 80.2 11 0.00025 36.2 9.4 94 107-216 154-255 (334)
381 PRK05476 S-adenosyl-L-homocyst 80.2 12 0.00025 38.1 9.4 84 111-216 210-297 (425)
382 TIGR00518 alaDH alanine dehydr 80.1 3.3 7.2E-05 41.3 5.5 95 112-215 166-264 (370)
383 cd08233 butanediol_DH_like (2R 79.9 4.1 8.8E-05 39.9 6.1 97 107-216 167-270 (351)
384 PLN02586 probable cinnamyl alc 79.9 7.8 0.00017 38.3 8.2 89 110-216 181-276 (360)
385 cd08255 2-desacetyl-2-hydroxye 79.6 9 0.00019 35.9 8.2 93 108-216 93-188 (277)
386 PRK07063 short chain dehydroge 79.6 10 0.00022 35.1 8.5 75 111-186 5-94 (260)
387 KOG2912 Predicted DNA methylas 79.5 6.3 0.00014 37.9 6.8 72 116-187 106-187 (419)
388 TIGR03201 dearomat_had 6-hydro 79.5 7.6 0.00017 38.1 7.9 44 108-152 162-208 (349)
389 PRK08293 3-hydroxybutyryl-CoA 79.2 13 0.00029 35.4 9.3 96 114-217 4-119 (287)
390 cd08301 alcohol_DH_plants Plan 79.2 11 0.00025 37.1 9.1 96 108-217 183-288 (369)
391 PRK09260 3-hydroxybutyryl-CoA 79.0 10 0.00022 36.2 8.4 99 114-220 2-119 (288)
392 PF01488 Shikimate_DH: Shikima 78.8 5.3 0.00012 33.5 5.7 72 109-186 8-83 (135)
393 PLN02494 adenosylhomocysteinas 78.8 8.3 0.00018 39.5 7.9 97 99-216 239-339 (477)
394 PF02254 TrkA_N: TrkA-N domain 78.6 5.8 0.00013 31.8 5.7 81 121-215 4-93 (116)
395 cd08263 Zn_ADH10 Alcohol dehyd 78.6 4.6 0.0001 39.8 6.1 91 110-216 185-285 (367)
396 PRK07066 3-hydroxybutyryl-CoA 78.4 14 0.0003 36.1 9.1 98 114-219 8-120 (321)
397 cd08279 Zn_ADH_class_III Class 78.3 5.2 0.00011 39.4 6.4 93 108-216 178-280 (363)
398 PRK06701 short chain dehydroge 78.2 24 0.00053 33.5 10.8 73 111-186 44-132 (290)
399 COG1062 AdhC Zn-dependent alco 78.1 5.9 0.00013 38.6 6.2 50 104-153 177-229 (366)
400 PF03686 UPF0146: Uncharacteri 77.9 6.9 0.00015 32.4 5.7 71 100-185 4-77 (127)
401 cd01487 E1_ThiF_like E1_ThiF_l 77.9 17 0.00037 32.0 8.8 30 115-144 1-32 (174)
402 PRK05808 3-hydroxybutyryl-CoA 77.9 25 0.00053 33.4 10.7 97 114-219 4-119 (282)
403 PRK12548 shikimate 5-dehydroge 77.9 16 0.00036 34.9 9.4 88 98-186 111-207 (289)
404 PRK08324 short chain dehydroge 77.7 16 0.00034 39.7 10.3 72 111-186 420-506 (681)
405 cd08238 sorbose_phosphate_red 77.4 13 0.00028 37.5 9.0 45 109-153 172-222 (410)
406 COG3315 O-Methyltransferase in 77.3 12 0.00026 36.0 8.3 168 94-263 75-261 (297)
407 KOG0725 Reductases with broad 76.9 32 0.00069 32.6 11.0 76 110-186 5-97 (270)
408 PRK07530 3-hydroxybutyryl-CoA 76.9 25 0.00054 33.6 10.5 98 114-220 5-121 (292)
409 cd01492 Aos1_SUMO Ubiquitin ac 76.9 15 0.00032 33.1 8.3 75 112-186 20-118 (197)
410 PRK06035 3-hydroxyacyl-CoA deh 76.8 19 0.00042 34.3 9.7 93 114-215 4-118 (291)
411 cd08295 double_bond_reductase_ 76.7 6.2 0.00013 38.4 6.3 96 106-216 145-249 (338)
412 cd08245 CAD Cinnamyl alcohol d 76.4 20 0.00043 34.5 9.7 93 108-217 158-255 (330)
413 PF03721 UDPG_MGDP_dh_N: UDP-g 76.2 15 0.00032 32.8 8.0 99 115-217 2-119 (185)
414 PRK07417 arogenate dehydrogena 75.9 15 0.00032 35.0 8.5 83 115-214 2-87 (279)
415 PRK05597 molybdopterin biosynt 75.9 17 0.00036 36.1 9.1 75 111-185 26-125 (355)
416 PF02558 ApbA: Ketopantoate re 75.9 7.4 0.00016 32.9 5.9 86 116-216 1-99 (151)
417 TIGR02441 fa_ox_alpha_mit fatt 75.8 11 0.00024 41.2 8.4 99 114-221 336-453 (737)
418 PLN03209 translocon at the inn 75.7 10 0.00023 39.9 7.8 79 106-186 73-167 (576)
419 cd05281 TDH Threonine dehydrog 75.3 7 0.00015 38.1 6.3 93 111-216 162-260 (341)
420 PF11899 DUF3419: Protein of u 75.2 9.7 0.00021 38.0 7.2 45 105-150 28-73 (380)
421 PF03446 NAD_binding_2: NAD bi 75.0 14 0.00029 32.0 7.4 84 115-215 3-91 (163)
422 PRK07819 3-hydroxybutyryl-CoA 74.8 17 0.00037 34.8 8.6 98 114-220 6-123 (286)
423 cd01483 E1_enzyme_family Super 74.7 26 0.00057 29.3 8.9 30 115-144 1-32 (143)
424 cd05279 Zn_ADH1 Liver alcohol 74.7 9.2 0.0002 37.8 7.0 96 107-216 178-283 (365)
425 cd08240 6_hydroxyhexanoate_dh_ 74.6 8.4 0.00018 37.6 6.6 90 111-216 174-272 (350)
426 cd05213 NAD_bind_Glutamyl_tRNA 74.6 20 0.00043 34.8 9.1 38 110-147 175-215 (311)
427 PRK11730 fadB multifunctional 74.4 17 0.00038 39.6 9.5 100 114-222 314-432 (715)
428 TIGR02355 moeB molybdopterin s 74.2 17 0.00037 33.8 8.2 34 111-144 22-57 (240)
429 COG1748 LYS9 Saccharopine dehy 74.2 10 0.00022 37.9 7.0 68 114-186 2-76 (389)
430 cd01488 Uba3_RUB Ubiquitin act 74.1 20 0.00044 34.4 8.8 71 115-185 1-95 (291)
431 cd08265 Zn_ADH3 Alcohol dehydr 74.0 8.2 0.00018 38.4 6.5 96 109-216 200-305 (384)
432 PRK05867 short chain dehydroge 73.9 17 0.00036 33.6 8.2 73 111-186 7-94 (253)
433 PRK08339 short chain dehydroge 73.9 18 0.00039 33.8 8.5 74 111-186 6-93 (263)
434 PRK11154 fadJ multifunctional 73.5 17 0.00037 39.6 9.2 100 114-222 310-429 (708)
435 PRK07502 cyclohexadienyl dehyd 73.4 18 0.0004 34.8 8.6 87 114-215 7-97 (307)
436 COG0287 TyrA Prephenate dehydr 73.3 18 0.0004 34.5 8.3 88 114-215 4-95 (279)
437 PRK07062 short chain dehydroge 73.2 19 0.00041 33.5 8.4 75 111-186 6-95 (265)
438 PRK05690 molybdopterin biosynt 73.2 22 0.00047 33.2 8.7 34 111-144 30-65 (245)
439 KOG1205 Predicted dehydrogenas 72.6 15 0.00032 35.1 7.4 75 111-186 10-99 (282)
440 PF11312 DUF3115: Protein of u 72.6 14 0.00031 35.6 7.2 104 114-217 88-241 (315)
441 PRK06914 short chain dehydroge 72.5 19 0.00041 33.8 8.4 73 113-186 3-89 (280)
442 PRK08762 molybdopterin biosynt 72.5 18 0.0004 36.0 8.5 34 111-144 133-168 (376)
443 cd00755 YgdL_like Family of ac 72.4 24 0.00053 32.6 8.7 33 112-144 10-44 (231)
444 PRK08223 hypothetical protein; 72.3 13 0.00029 35.5 7.0 34 111-144 25-60 (287)
445 TIGR02437 FadB fatty oxidation 71.7 21 0.00045 39.0 9.3 100 114-222 314-432 (714)
446 cd08286 FDH_like_ADH2 formalde 71.2 11 0.00023 36.8 6.4 95 109-216 163-264 (345)
447 PRK09242 tropinone reductase; 71.1 23 0.0005 32.7 8.5 75 111-186 7-96 (257)
448 PRK06522 2-dehydropantoate 2-r 70.9 22 0.00048 33.9 8.5 91 115-216 2-98 (304)
449 PRK07677 short chain dehydroge 70.8 22 0.00047 32.8 8.2 71 113-186 1-86 (252)
450 PRK06130 3-hydroxybutyryl-CoA 70.8 30 0.00065 33.3 9.4 94 114-215 5-112 (311)
451 PLN02256 arogenate dehydrogena 70.6 26 0.00057 33.8 8.9 88 110-214 33-123 (304)
452 KOG1208 Dehydrogenases with di 70.5 35 0.00075 33.2 9.6 75 111-186 33-122 (314)
453 PLN02514 cinnamyl-alcohol dehy 70.5 22 0.00047 35.0 8.5 92 111-217 179-274 (357)
454 cd01484 E1-2_like Ubiquitin ac 70.2 32 0.0007 31.9 9.0 71 115-185 1-98 (234)
455 PRK07411 hypothetical protein; 69.6 23 0.00049 35.6 8.4 74 112-185 37-135 (390)
456 PF00106 adh_short: short chai 69.5 22 0.00049 30.1 7.5 71 114-186 1-88 (167)
457 KOG2352 Predicted spermine/spe 69.4 3.2 6.9E-05 42.2 2.3 105 112-217 295-415 (482)
458 PRK06128 oxidoreductase; Provi 69.4 50 0.0011 31.4 10.6 73 111-186 53-142 (300)
459 PRK10083 putative oxidoreducta 69.4 22 0.00047 34.4 8.2 96 108-216 156-257 (339)
460 PRK06249 2-dehydropantoate 2-r 69.1 12 0.00025 36.3 6.1 92 113-216 5-104 (313)
461 PRK06172 short chain dehydroge 69.1 27 0.00058 32.1 8.4 73 111-186 5-92 (253)
462 COG1893 ApbA Ketopantoate redu 68.8 14 0.0003 35.8 6.5 88 114-216 1-99 (307)
463 PRK05396 tdh L-threonine 3-deh 68.8 8.9 0.00019 37.3 5.3 94 111-217 162-262 (341)
464 PF05050 Methyltransf_21: Meth 68.6 12 0.00025 31.9 5.5 53 118-170 1-61 (167)
465 PLN02545 3-hydroxybutyryl-CoA 68.3 62 0.0013 30.9 11.0 97 114-219 5-120 (295)
466 PRK08306 dipicolinate synthase 68.2 36 0.00077 32.8 9.2 85 111-215 150-238 (296)
467 PRK07806 short chain dehydroge 68.1 59 0.0013 29.7 10.5 103 111-216 4-132 (248)
468 TIGR00692 tdh L-threonine 3-de 68.0 9 0.0002 37.2 5.2 93 111-216 160-259 (340)
469 PRK08328 hypothetical protein; 67.9 38 0.00083 31.2 9.0 33 112-144 26-60 (231)
470 PF03514 GRAS: GRAS domain fam 67.5 48 0.001 33.1 10.2 112 102-217 100-243 (374)
471 PLN02178 cinnamyl-alcohol dehy 67.4 30 0.00066 34.4 8.9 89 111-216 177-271 (375)
472 PRK07877 hypothetical protein; 67.3 19 0.00042 39.1 7.8 75 111-185 105-203 (722)
473 PRK06197 short chain dehydroge 67.2 30 0.00066 33.0 8.6 75 111-186 14-103 (306)
474 KOG2539 Mitochondrial/chloropl 67.2 7 0.00015 39.6 4.0 106 111-216 199-313 (491)
475 PRK09186 flagellin modificatio 67.0 31 0.00066 31.7 8.4 74 112-186 3-91 (256)
476 PRK08703 short chain dehydroge 66.8 46 0.001 30.2 9.4 59 111-171 4-66 (239)
477 TIGR03693 ocin_ThiF_like putat 66.6 28 0.00061 36.8 8.4 33 112-144 128-162 (637)
478 PRK05876 short chain dehydroge 66.4 31 0.00067 32.5 8.3 73 111-186 4-91 (275)
479 PRK08945 putative oxoacyl-(acy 66.3 37 0.0008 31.1 8.7 74 111-186 10-100 (247)
480 PRK12829 short chain dehydroge 66.2 28 0.0006 32.1 7.9 73 109-186 7-94 (264)
481 cd01489 Uba2_SUMO Ubiquitin ac 66.0 50 0.0011 32.1 9.6 71 115-185 1-97 (312)
482 KOG2918 Carboxymethyl transfer 66.0 81 0.0017 30.5 10.6 49 96-144 70-120 (335)
483 TIGR00853 pts-lac PTS system, 66.0 29 0.00063 27.1 6.7 54 114-186 4-58 (95)
484 PRK07904 short chain dehydroge 65.8 29 0.00063 32.2 7.9 74 111-185 6-94 (253)
485 KOG2013 SMT3/SUMO-activating c 65.6 10 0.00022 38.5 4.8 73 112-184 11-109 (603)
486 cd08242 MDR_like Medium chain 65.6 41 0.00088 32.2 9.2 90 108-216 151-243 (319)
487 PRK07831 short chain dehydroge 65.5 37 0.0008 31.4 8.6 75 111-186 15-105 (262)
488 PLN02989 cinnamyl-alcohol dehy 65.2 24 0.00052 34.0 7.5 73 112-186 4-85 (325)
489 COG0863 DNA modification methy 65.0 27 0.00059 33.2 7.8 57 99-157 210-267 (302)
490 cd08287 FDH_like_ADH3 formalde 64.8 13 0.00029 36.0 5.7 93 109-217 165-267 (345)
491 PF02153 PDH: Prephenate dehyd 64.6 25 0.00055 33.0 7.3 74 126-215 1-76 (258)
492 PRK06153 hypothetical protein; 64.6 41 0.0009 33.6 8.8 34 111-144 174-209 (393)
493 cd05284 arabinose_DH_like D-ar 64.5 21 0.00045 34.5 7.0 91 110-216 165-264 (340)
494 PRK08268 3-hydroxy-acyl-CoA de 64.2 39 0.00085 35.2 9.2 98 114-220 8-124 (507)
495 PRK06124 gluconate 5-dehydroge 64.1 39 0.00084 31.1 8.5 73 111-186 9-96 (256)
496 cd08296 CAD_like Cinnamyl alco 64.1 34 0.00074 33.1 8.4 94 109-216 160-257 (333)
497 cd08241 QOR1 Quinone oxidoredu 63.9 18 0.00039 34.2 6.3 94 108-216 135-236 (323)
498 PLN02780 ketoreductase/ oxidor 63.9 30 0.00064 33.6 7.8 59 112-171 52-114 (320)
499 KOG4169 15-hydroxyprostaglandi 63.8 32 0.0007 31.7 7.3 74 111-186 3-91 (261)
500 PRK14852 hypothetical protein; 63.7 40 0.00087 37.8 9.4 75 111-185 330-429 (989)
No 1
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-60 Score=443.84 Aligned_cols=311 Identities=49% Similarity=0.840 Sum_probs=295.3
Q ss_pred hhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHH
Q 014247 73 FDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANE 152 (428)
Q Consensus 73 ~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~ 152 (428)
.+..||.+|+++++|++|++|..|+.+|+.+|..+....++++|||||||+|.+++.+|++|+++|+|+|.|.+++.|++
T Consensus 21 ~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~ 100 (346)
T KOG1499|consen 21 SDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARK 100 (346)
T ss_pred hhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc
Q 014247 153 VVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR 231 (428)
Q Consensus 153 ~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~ 231 (428)
.+..|++++.|+++++.++++.+| +++|+|+|+|||+++.++.+++.+|.+..++|+|||.++|+.++++++++.....
T Consensus 101 iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~ 180 (346)
T KOG1499|consen 101 IVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSY 180 (346)
T ss_pred HHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchh
Confidence 999999999999999999999888 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccceeE
Q 014247 232 YSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHG 311 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g 311 (428)
....+.||.++|||+|+.+..... ..+.++.++++++++.|+.+..+|+.++..+++. +...|++.+.+++.+||
T Consensus 181 ~~~~i~fW~~Vygfdms~~~~~~~----~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~-F~s~f~l~v~r~~~i~g 255 (346)
T KOG1499|consen 181 KDDKIGFWDDVYGFDMSCIKKIAI----KEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLS-FTSPFKLKVTRNGYLHA 255 (346)
T ss_pred hhhhcCccccccccchhhhhhhhh----cccceeccChhHhcccceeeEEeeeeeeecccee-eccceEEEEccCceEEE
Confidence 888899999999999999987654 3455678899999999999999999999999997 99999999999999999
Q ss_pred EEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccCCCCE
Q 014247 312 FAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQL 391 (428)
Q Consensus 312 ~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~~g~~ 391 (428)
|++||++.|.++.+ ...+.+||+|..++|||||+||+|++|+.|++||.
T Consensus 256 ~v~yFDv~F~~~~~-------------------------------~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~ 304 (346)
T KOG1499|consen 256 FVAYFDVEFTGCHG-------------------------------KKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGED 304 (346)
T ss_pred EEEEEEEeeccCCC-------------------------------CCcceeecCCCCCCceeeeEEEEecCccceecCce
Confidence 99999999975321 24789999999999999999999999999999999
Q ss_pred EEEEEEEEeCCCCCeeEEEEEEEEECCe
Q 014247 392 IEGSVVLSQSKENARFMNIHLEYASGGR 419 (428)
Q Consensus 392 i~~~~~~~~~~~~~r~~~~~~~~~~~~~ 419 (428)
|.|+|+|++++.|+|.|+|.+.+..+++
T Consensus 305 i~g~it~~~~~~~~R~l~~~l~~~~~~~ 332 (346)
T KOG1499|consen 305 ITGTITMKPNKKNNRDLDISLSLNFKGQ 332 (346)
T ss_pred EEEEEEEeeCCCCCccceEEEEEecCCc
Confidence 9999999999999999999999999988
No 2
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=4.6e-47 Score=348.85 Aligned_cols=311 Identities=39% Similarity=0.662 Sum_probs=282.7
Q ss_pred hhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHH
Q 014247 73 FDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANE 152 (428)
Q Consensus 73 ~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~ 152 (428)
....||.-|..+....+|+.|..|+..|.++|..+...+.++.|||+|||+|++++.+|++|+++|++||.|+|++.|++
T Consensus 138 SA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~ 217 (517)
T KOG1500|consen 138 SASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARK 217 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHH
Confidence 44679999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch
Q 014247 153 VVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY 232 (428)
Q Consensus 153 ~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 232 (428)
.++.|.+.++|+++.+.++++.+|+++|+|++++|++++.++.+++..+.+. ++|+|.|.++|+...+.++|+.+..++
T Consensus 218 Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE~Ly 296 (517)
T KOG1500|consen 218 LVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDEQLY 296 (517)
T ss_pred HHhcCCccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchHHHH
Confidence 9999999999999999999999999999999999999999999999999876 999999999999999999999998887
Q ss_pred hh---hhhhhhc--cCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeecc
Q 014247 233 SE---SIDFWRN--VYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRA 307 (428)
Q Consensus 233 ~~---~~~~~~~--~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g 307 (428)
.+ ...||.. .||.|++.+.....+.-|..|.++.++..-+... .....+||.....+++.++.-+++|.+...|
T Consensus 297 ~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~-sv~h~~dF~~~kEedlh~i~iPlkF~~~~~g 375 (517)
T KOG1500|consen 297 VEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAK-SVFHVIDFLNMKEEDLHEIDIPLKFHALQCG 375 (517)
T ss_pred HHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeecc-chHhhhhhhhcccchheeecccceehhhhhc
Confidence 65 3567864 7899999998888888899999999887655444 4567889999999999988899999999999
Q ss_pred ceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccC
Q 014247 308 PLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVE 387 (428)
Q Consensus 308 ~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~ 387 (428)
.+||+++|||+.|.|. .-.+++||+|.+|.|||-|..++|..||.|+
T Consensus 376 ~iHGLAfWFDV~F~GS---------------------------------~~~~wlsTap~apltHwyqvrCll~~Pi~v~ 422 (517)
T KOG1500|consen 376 RIHGLAFWFDVLFDGS---------------------------------TVQVWLSTAPTAPLTHWYQVRCLLSQPIFVK 422 (517)
T ss_pred ceeeeeeEEEEEeccc---------------------------------eEEEccCCCCCCCcccceeeeeeccCchhhh
Confidence 9999999999999862 2368999999999999999999999999999
Q ss_pred CCCEEEEEEEEEeCCCCCeeEEEEEEEEECC
Q 014247 388 QDQLIEGSVVLSQSKENARFMNIHLEYASGG 418 (428)
Q Consensus 388 ~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 418 (428)
+||+|+|.+.+..+......++|.+++..-.
T Consensus 423 aGq~ltGr~~LiA~~~QSY~i~i~l~~~~~l 453 (517)
T KOG1500|consen 423 AGQTLTGRLLLIANSRQSYDITITLSAKMTL 453 (517)
T ss_pred cCCeeeeeEEEEEccccceeEEEEEEeeeee
Confidence 9999999999999888777777777765443
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=2.7e-40 Score=330.99 Aligned_cols=275 Identities=33% Similarity=0.520 Sum_probs=219.8
Q ss_pred hhhhhhccChhhHHHHHHHHHhccCCC--------CCCEEEEEcCCCcHHHHHHHHcC-----CCeEEEEeCh-HHHHHH
Q 014247 85 GIHEEMIKDRVRTETYRAAIMQNQSFI--------EGKVVVDVGCGTGILSIFCAQAG-----AKRVYAVDAS-DIAVQA 150 (428)
Q Consensus 85 ~~~~~~~~d~~r~~~~~~~i~~~~~~~--------~~~~VLDiGcGtG~ls~~la~~g-----~~~V~giD~s-~~~~~a 150 (428)
..|+.+.+|..++..|.++|.+++... ++++|||||||+|.|+..+++++ +.+|+|||.| ......
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l 230 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTL 230 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHH
Confidence 467888999999999999998775321 35789999999999999998875 5799999999 555555
Q ss_pred HHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCcc
Q 014247 151 NEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD 230 (428)
Q Consensus 151 ~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 230 (428)
+++++.+++.++|+++++|++++..++++|+||||+||+++.++. .+++|.++.++|||||+++|+.++.|++|+..+.
T Consensus 231 ~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl-~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~ 309 (448)
T PF05185_consen 231 QKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNEL-SPECLDAADRFLKPDGIMIPSSYTSYLAPISSPK 309 (448)
T ss_dssp HHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTS-HHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HH
T ss_pred HHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCcccccc-CHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHH
Confidence 667789999999999999999999999999999999999988885 5668999999999999999999999999999998
Q ss_pred chhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCC-eeEEEEeCCCCCc--ccccceeeeeEEEEeecc
Q 014247 231 RYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWP-HVVKHVDCYTIQI--HELESIATTFKFKSMMRA 307 (428)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p-~~~~~~d~~~~~~--~~l~~~~~~~~~~~~~~g 307 (428)
.+.+...++. ...|+.+.+..+.+...++.+ ..+.+|++.+... ++.......++|.+..+|
T Consensus 310 l~~~~~~~~~---------------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g 374 (448)
T PF05185_consen 310 LYQEVRNWWN---------------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDG 374 (448)
T ss_dssp HHHHHHHHHG---------------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSE
T ss_pred HHHHHHhhcc---------------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCc
Confidence 8777554442 346788888888888888888 8899999887652 344456789999999999
Q ss_pred ceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCC----CCCceeeeEEeeCCc
Q 014247 308 PLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPED----PPTHWQQTMIYFYDP 383 (428)
Q Consensus 308 ~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~----~~thW~q~~~~l~~p 383 (428)
.+|||++||++.|++ +|.|||+|.. +.+||+|++|||++|
T Consensus 375 ~vhGfagwFd~~Ly~------------------------------------~V~LSt~P~~~~s~~~tsW~q~~fpL~~P 418 (448)
T PF05185_consen 375 VVHGFAGWFDAVLYG------------------------------------DVVLSTSPSSAHSPPMTSWFQIFFPLEEP 418 (448)
T ss_dssp EEEEEEEEEEEEEEC------------------------------------SEEEESSTTS---TT--TTEEEEEEEEEE
T ss_pred EEEEEEEEEEEEeeC------------------------------------CeeeecCCCcCCCCCCCeEeEEEEEecCc
Confidence 999999999999974 5999999987 679999999999999
Q ss_pred cccCCCCEEEEEEEEEeCCCCCeeEEEEE
Q 014247 384 IEVEQDQLIEGSVVLSQSKENARFMNIHL 412 (428)
Q Consensus 384 i~v~~g~~i~~~~~~~~~~~~~r~~~~~~ 412 (428)
+.|++||+|+++++...+ ...=+|+..+
T Consensus 419 l~V~~g~~I~~~i~R~~~-~~~vWYEW~v 446 (448)
T PF05185_consen 419 LYVKAGDEISVHIWRKTD-DRKVWYEWSV 446 (448)
T ss_dssp EEE-TT-EEEEEEEEECC-STCEEEEEEE
T ss_pred EEECCCCEEEEEEEEEcC-CCcEEEEEEE
Confidence 999999999988887765 4455666554
No 4
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.3e-25 Score=216.80 Aligned_cols=276 Identities=23% Similarity=0.330 Sum_probs=218.9
Q ss_pred hhhhhhccChhhHHHHHHHHHhccCCC-------CCCEEEEEcCCCcHHHHHHHHc-----CCCeEEEEeChHHHHHHHH
Q 014247 85 GIHEEMIKDRVRTETYRAAIMQNQSFI-------EGKVVVDVGCGTGILSIFCAQA-----GAKRVYAVDASDIAVQANE 152 (428)
Q Consensus 85 ~~~~~~~~d~~r~~~~~~~i~~~~~~~-------~~~~VLDiGcGtG~ls~~la~~-----g~~~V~giD~s~~~~~a~~ 152 (428)
..|+.+.+|...+..|.++|.+++... .-.+|+-+|+|.|-+.....++ .--++++||.++.+....+
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~ 412 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ 412 (649)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh
Confidence 357778899999999999998876432 1246889999999886555443 1228999999944334344
Q ss_pred HHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc
Q 014247 153 VVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR 231 (428)
Q Consensus 153 ~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~ 231 (428)
+..-..+.++|+++.+|++.+..+ ++.|++||+++|++..++. -+++|..+.++|||+|+.||...+.|+.|+..+.+
T Consensus 413 ~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNEL-SPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l 491 (649)
T KOG0822|consen 413 NRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNEL-SPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKL 491 (649)
T ss_pred hhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccC-CHHHHHHHHhhcCCCceEccchhhhhhcccccHHH
Confidence 455567888999999999999887 9999999999999888887 57789999999999999999999999999999888
Q ss_pred hhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccceeE
Q 014247 232 YSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHG 311 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g 311 (428)
|.+.... ...+.|+.+.+..+.....++.+..+++|..++....--......++|++..+|.+||
T Consensus 492 ~q~v~a~---------------~~~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHG 556 (649)
T KOG0822|consen 492 YQEVKAT---------------NDPNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHG 556 (649)
T ss_pred HHHHHhc---------------CCccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEee
Confidence 7654321 1125788888888888889999999999999876433223346788999999999999
Q ss_pred EEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCC--C-CCceeeeEEeeCCccccCC
Q 014247 312 FAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPED--P-PTHWQQTMIYFYDPIEVEQ 388 (428)
Q Consensus 312 ~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~--~-~thW~q~~~~l~~pi~v~~ 388 (428)
|++|||+.|++ +|.||+.|.. | -.+|++++|||++|+.|.+
T Consensus 557 FaGYFd~~LYk------------------------------------dI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e 600 (649)
T KOG0822|consen 557 FAGYFDAVLYK------------------------------------DIFLSIEPNTHTPGMFSWFPIFFPLKQPITVRE 600 (649)
T ss_pred cchhhhhhhhh------------------------------------eeeEeeccCCCCCCceeeeeeeeeccCceEeCC
Confidence 99999999984 7999999973 1 2579999999999999999
Q ss_pred CCEEEEEEEEEeCCCCCeeEEEEEE
Q 014247 389 DQLIEGSVVLSQSKENARFMNIHLE 413 (428)
Q Consensus 389 g~~i~~~~~~~~~~~~~r~~~~~~~ 413 (428)
|++|+..++...+ ...-+|+..++
T Consensus 601 ~~~lsv~~wR~~d-~~kVWYEW~v~ 624 (649)
T KOG0822|consen 601 GSTLSVHFWRCVD-STKVWYEWSVE 624 (649)
T ss_pred CCeEEEEEEEEeC-CceeEEEEEee
Confidence 9999977766652 23345554444
No 5
>PTZ00357 methyltransferase; Provisional
Probab=99.87 E-value=1.7e-20 Score=187.51 Aligned_cols=296 Identities=18% Similarity=0.199 Sum_probs=203.6
Q ss_pred hhhhhhccChhhHHHHHHHHHhccCCC---------------------------------CCCEEEEEcCCCcHHHHHHH
Q 014247 85 GIHEEMIKDRVRTETYRAAIMQNQSFI---------------------------------EGKVVVDVGCGTGILSIFCA 131 (428)
Q Consensus 85 ~~~~~~~~d~~r~~~~~~~i~~~~~~~---------------------------------~~~~VLDiGcGtG~ls~~la 131 (428)
..|+.+.+|..+++.|.++|.+.+... ...+|+-+|+|.|.|...+.
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraL 719 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECL 719 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHH
Confidence 467888999999999999998876210 11368999999998865554
Q ss_pred Hc----CCC-eEEEEeCh-HHHHHHHHHH-HHCCC-------CCcEEEEEcccccccCC------------CceeEEEEe
Q 014247 132 QA----GAK-RVYAVDAS-DIAVQANEVV-KANNL-------TDKVIVLHGRVEDVEID------------EEVDVIISE 185 (428)
Q Consensus 132 ~~----g~~-~V~giD~s-~~~~~a~~~~-~~~~~-------~~~v~~~~~d~~~l~~~------------~~~DlVvs~ 185 (428)
++ |.+ +|++||.+ +.+...+.+. ....+ .++|+++..|++.+..+ +++|+||||
T Consensus 720 rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 720 HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh
Confidence 43 322 89999999 6554444332 33344 34699999999998543 379999999
Q ss_pred cchhhhcchhhHHHHHHHHhccccc----Ce-------EEEccCCeeeEeecCCccchhhhhhhhhccCCCCcch-hHHH
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKR----GG-------LILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSA-MMPL 253 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~Lkp----gG-------~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 253 (428)
++|++..+|. -+++|..+.+.||+ +| +.||...+.|++|+..+.++.+....-. .++.... ....
T Consensus 800 LLGSFGDNEL-SPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~~~--~gltvP~p~c~~ 876 (1072)
T PTZ00357 800 LLGSLGDNEL-SPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEAAV--KGLTVPPPGCHD 876 (1072)
T ss_pred hhcccccccC-CHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHhhh--cccccCCccccc
Confidence 9999998887 56778888888875 55 5899999999999999988776432111 1111100 0000
Q ss_pred HHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCccc----------------ccceeeeeEEEEeeccceeEEEEEEE
Q 014247 254 AKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHE----------------LESIATTFKFKSMMRAPLHGFAFWFD 317 (428)
Q Consensus 254 l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~----------------l~~~~~~~~~~~~~~g~~~g~~~wf~ 317 (428)
...+.|+.+.+..+.....++.|..+++|..++..... .......+.|.+..++.||||++||+
T Consensus 877 ~haa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFd 956 (1072)
T PTZ00357 877 HHAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFS 956 (1072)
T ss_pred cchhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEE
Confidence 01123555666666666677889999999987654210 11235788999999999999999999
Q ss_pred eeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCC---CCceeeeEEeeC---CccccCCCC-
Q 014247 318 VEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP---PTHWQQTMIYFY---DPIEVEQDQ- 390 (428)
Q Consensus 318 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~---~thW~q~~~~l~---~pi~v~~g~- 390 (428)
+.|++.+. ...+.|||.|..- .-+|++++|||+ .+..+++||
T Consensus 957 AvLYkDVt-------------------------------~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~ 1005 (1072)
T PTZ00357 957 AVLYQSAT-------------------------------APATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQA 1005 (1072)
T ss_pred EEeecCCC-------------------------------ccceEeecCCCCCCCCccceeeeEEecCccccceEeecccc
Confidence 99996211 1248899999732 247999999999 677777776
Q ss_pred ------EEEEEEEEEeCC---CCCeeEEEEEEE
Q 014247 391 ------LIEGSVVLSQSK---ENARFMNIHLEY 414 (428)
Q Consensus 391 ------~i~~~~~~~~~~---~~~r~~~~~~~~ 414 (428)
.+...|++.+.. +..-+|+..+.+
T Consensus 1006 ~~~~~~~~~i~~~l~Rr~~~~e~rVwYew~v~~ 1038 (1072)
T PTZ00357 1006 AAEESRMVAIRVQLDRRTSLAEQRVWYEWSVTY 1038 (1072)
T ss_pred ccccccceeEEEeeeeccccccceEEEEEEEee
Confidence 234445555543 344566666654
No 6
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.83 E-value=1.5e-20 Score=179.43 Aligned_cols=269 Identities=22% Similarity=0.272 Sum_probs=196.9
Q ss_pred hhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCC-----C-CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-H
Q 014247 73 FDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIE-----G-KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-D 145 (428)
Q Consensus 73 ~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~-----~-~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~ 145 (428)
+++++-+..++.. |.+|++|..|+.+|+..|...+...+ | ..|||||+|||+++++++++|+..|+|+|.- +
T Consensus 22 e~yd~~qelArSs-y~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkP 100 (636)
T KOG1501|consen 22 ENYDTDQELARSS-YLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKP 100 (636)
T ss_pred cccchHHHHHHhh-HHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhch
Confidence 3445555555543 77899999999999999988764332 1 3699999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeE
Q 014247 146 IAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYM 223 (428)
Q Consensus 146 ~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 223 (428)
|.+.|++...+||++++|.+++...+++... .+.|+++.+.+..-+..+..++.+-.+..+++++|...+|.+++.|+
T Consensus 101 M~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~ 180 (636)
T KOG1501|consen 101 MVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYC 180 (636)
T ss_pred HHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEE
Confidence 9999999999999999999999988887654 45899999888888888888999999999999999999999999999
Q ss_pred eecCCccchhhhhhhhhccCCCCcch------hHHHHHhc-CCC----CceEEeec-CCccccCCeeEEEEeCCCCCccc
Q 014247 224 APVTHPDRYSESIDFWRNVYGIDMSA------MMPLAKQC-AFE----EPSVETIT-GENVLTWPHVVKHVDCYTIQIHE 291 (428)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~l~~~-Gf~----~~~~~~~~-~~~~ls~p~~~~~~d~~~~~~~~ 291 (428)
.++++..++. |.+........ ...-++.| |-. ....+... .-.+|+.+-.++.+||..-....
T Consensus 181 qlVES~~l~~-----~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~ 255 (636)
T KOG1501|consen 181 QLVESTFLCN-----LNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSN 255 (636)
T ss_pred EEehhhhhhh-----hhccccccccccCCcccCCCccccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcc
Confidence 9998765542 22221111110 00001111 110 00011111 12578889999999997321110
Q ss_pred ccceeeeeEEEEeeccceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCC--
Q 014247 292 LESIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP-- 369 (428)
Q Consensus 292 l~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~-- 369 (428)
- ..+....+....+|++.....||+.+|+ +.+.+.+..+|.+.
T Consensus 256 s-~~~~~r~~va~~Sg~~~~~l~wwdi~mD----------------------------------~~g~~f~~m~p~w~~~ 300 (636)
T KOG1501|consen 256 S-EIEELRPPVAVHSGPLRSNLLWWDISMD----------------------------------QFGFSFLVMQPLWTGV 300 (636)
T ss_pred h-hhhhhcCcccccccchhheeeeeeeeec----------------------------------cCcceEEEecceecCC
Confidence 0 0111334556678999999999999995 35678889999742
Q ss_pred -------CCceeeeEEeeCC
Q 014247 370 -------PTHWQQTMIYFYD 382 (428)
Q Consensus 370 -------~thW~q~~~~l~~ 382 (428)
..||.|+++++++
T Consensus 301 ~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 301 TIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred ChHHHHHHHHHHHhcCCChh
Confidence 2699999999884
No 7
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.79 E-value=1.9e-18 Score=166.86 Aligned_cols=194 Identities=19% Similarity=0.168 Sum_probs=134.5
Q ss_pred CCCchhhHHHhhhccchhhhh------hccChhhHHHHHHHHHhccC-------CCCCCEEEEEcCCCcHHHHHHHHcCC
Q 014247 69 PCTDFDVAYFHSYAHVGIHEE------MIKDRVRTETYRAAIMQNQS-------FIEGKVVVDVGCGTGILSIFCAQAGA 135 (428)
Q Consensus 69 ~~~~~~~~~f~~y~~~~~~~~------~~~d~~r~~~~~~~i~~~~~-------~~~~~~VLDiGcGtG~ls~~la~~g~ 135 (428)
.....+...|+..+..+|... ...+..|...+.+.+.+.+. ..++.+|||||||+|.++..+++.|+
T Consensus 75 s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~ 154 (322)
T PLN02396 75 SLNEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGA 154 (322)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCC
Confidence 445566667777776544321 11234455555555544432 24677999999999999999999876
Q ss_pred CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeE
Q 014247 136 KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGL 213 (428)
Q Consensus 136 ~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 213 (428)
+|+|||++ .+++.|++++...+...+++++++|+++++.. ++||+|++.. +++|..++..+++++.++|||||.
T Consensus 155 -~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~---vLeHv~d~~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 155 -TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE---VIEHVANPAEFCKSLSALTIPNGA 230 (322)
T ss_pred -EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh---HHHhcCCHHHHHHHHHHHcCCCcE
Confidence 89999999 99999998877666656799999999988754 7899999854 788888899999999999999999
Q ss_pred EEccCCeeeEeecCCccchhhhhhhhhc------cCCCCcchhHHHHHhcCCCCceEEe
Q 014247 214 ILPSYATLYMAPVTHPDRYSESIDFWRN------VYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 214 lv~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
+++...+.............+....|-. ...++.+++..+++++||+...+.-
T Consensus 231 liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G 289 (322)
T PLN02396 231 TVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAG 289 (322)
T ss_pred EEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEee
Confidence 9987654221000000000000011100 1235788999999999998766543
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=2e-18 Score=158.30 Aligned_cols=117 Identities=25% Similarity=0.389 Sum_probs=104.7
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
...|++.+...+...+|.+|||||||||.+++.+++. |..+|+|+|+| .|+..|+++....+..+ ++|+++|++++|
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP 114 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP 114 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC
Confidence 3467777777766668999999999999999999997 66799999999 99999999999888877 999999999999
Q ss_pred CC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++ .+||+|.+.. .+.+..+.+.+|++++|+|||||++++.
T Consensus 115 f~D~sFD~vt~~f---glrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 115 FPDNSFDAVTISF---GLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred CCCCccCEEEeee---hhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 97 9999999754 8999999999999999999999988753
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=1.6e-18 Score=160.40 Aligned_cols=115 Identities=24% Similarity=0.344 Sum_probs=84.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.|++.+.+.+...++.+|||+|||||.++..+++. + ..+|+|+|+| +|++.|++++...+.. +|+++++|++++++
T Consensus 34 ~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 34 RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF 112 (233)
T ss_dssp ---SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S
T ss_pred HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC
Confidence 45555666666688999999999999999999886 3 3499999999 9999999999988776 69999999999998
Q ss_pred C-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 D-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ ++||+|++.. .+.+..++..+++++.|+|||||++++-
T Consensus 113 ~d~sfD~v~~~f---glrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 113 PDNSFDAVTCSF---GLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp -TT-EEEEEEES----GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCceeEEEHHh---hHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 6 8999999754 7777788999999999999999998754
No 10
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.76 E-value=1.9e-17 Score=159.25 Aligned_cols=165 Identities=19% Similarity=0.219 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
.+.......+...+...++++|||||||+|.++..++..|+..|+|+|+| .|+..++...+..+...++.+..++++++
T Consensus 104 ~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l 183 (314)
T TIGR00452 104 WRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL 183 (314)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC
Confidence 33344455666666678899999999999999999998888889999999 88776543322222234688999999998
Q ss_pred cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEe---ecCCccchhhhhhhhhcc-CCCCcch
Q 014247 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMA---PVTHPDRYSESIDFWRNV-YGIDMSA 249 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~ 249 (428)
+...+||+|+|.. ++.|..++..+++++++.|+|||.+++.+..+... .......+... .++ +..+...
T Consensus 184 p~~~~FD~V~s~g---vL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~----~nv~flpS~~~ 256 (314)
T TIGR00452 184 HELYAFDTVFSMG---VLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKM----KNVYFIPSVSA 256 (314)
T ss_pred CCCCCcCEEEEcc---hhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhc----cccccCCCHHH
Confidence 7767899999965 66677789999999999999999999865322110 00011112111 122 3446788
Q ss_pred hHHHHHhcCCCCceEEe
Q 014247 250 MMPLAKQCAFEEPSVET 266 (428)
Q Consensus 250 l~~~l~~~Gf~~~~~~~ 266 (428)
+..+++++||+.+.+..
T Consensus 257 L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 257 LKNWLEKVGFENFRILD 273 (314)
T ss_pred HHHHHHHCCCeEEEEEe
Confidence 99999999999876543
No 11
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=3.5e-17 Score=158.99 Aligned_cols=167 Identities=20% Similarity=0.208 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
+.....+.+...+...++++|||||||+|.++..+++.|++.|+|+|+| .++..++......+...++.++.+|+++++
T Consensus 106 ~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp 185 (322)
T PRK15068 106 RSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP 185 (322)
T ss_pred hHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC
Confidence 3333345556666667889999999999999999999988889999999 777654443333233446999999999998
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh-hhhhhhccC-CCCcchhHH
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRNVY-GIDMSAMMP 252 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~ 252 (428)
.+++||+|+|.. +++|..++..+++++++.|+|||.+++...... .......+.. ....+.+++ ..+...+..
T Consensus 186 ~~~~FD~V~s~~---vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~--~~~~~~l~p~~~y~~~~~~~~lps~~~l~~ 260 (322)
T PRK15068 186 ALKAFDTVFSMG---VLYHRRSPLDHLKQLKDQLVPGGELVLETLVID--GDENTVLVPGDRYAKMRNVYFIPSVPALKN 260 (322)
T ss_pred CcCCcCEEEECC---hhhccCCHHHHHHHHHHhcCCCcEEEEEEEEec--CCCccccCchhHHhcCccceeCCCHHHHHH
Confidence 778999999955 566777899999999999999999998642111 1000001110 000111222 236788999
Q ss_pred HHHhcCCCCceEEee
Q 014247 253 LAKQCAFEEPSVETI 267 (428)
Q Consensus 253 ~l~~~Gf~~~~~~~~ 267 (428)
+++++||+.+.+...
T Consensus 261 ~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 261 WLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHcCCceEEEEeC
Confidence 999999998766544
No 12
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.74 E-value=7.1e-18 Score=151.92 Aligned_cols=146 Identities=25% Similarity=0.244 Sum_probs=115.2
Q ss_pred CCCchhhHHHhhhccchhhhh------hccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEe
Q 014247 69 PCTDFDVAYFHSYAHVGIHEE------MIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 142 (428)
Q Consensus 69 ~~~~~~~~~f~~y~~~~~~~~------~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD 142 (428)
...+...+-|+..+..+|... ...++.|...+.+.+..... .+|++|||||||-|.++..+|+.|+ +|+|+|
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD 88 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLGA-SVTGID 88 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHCCC-eeEEec
Confidence 344555566777666654221 12233444444444433332 6899999999999999999999997 999999
Q ss_pred Ch-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 143 AS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 143 ~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
++ .+++.|+..+.++++. +.+.+..++++... ++||+|+|.- +++|.+++..+++.+.+++||||.+++++.+
T Consensus 89 ~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmE---VlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 89 ASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCME---VLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred CChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhh---HHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 99 9999999999998875 78899999988765 8999999955 8999999999999999999999999998876
Q ss_pred e
Q 014247 221 L 221 (428)
Q Consensus 221 ~ 221 (428)
.
T Consensus 164 r 164 (243)
T COG2227 164 R 164 (243)
T ss_pred c
Confidence 4
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.74 E-value=5e-17 Score=159.46 Aligned_cols=157 Identities=20% Similarity=0.123 Sum_probs=116.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~ 188 (428)
.++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++...++.++++++.+|+.+++++ ++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~-- 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME-- 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC--
Confidence 5778999999999999999998633399999999 99999999999888888899999999998775 8999999855
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc---hhhhhhhhhcc----CCCCcchhHHHHHhcCCCC
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR---YSESIDFWRNV----YGIDMSAMMPLAKQCAFEE 261 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~l~~~l~~~Gf~~ 261 (428)
.++|..+...+++++.++|||||.+++............... ........... ...+...+..+++++||..
T Consensus 195 -~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~ 273 (340)
T PLN02244 195 -SGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQD 273 (340)
T ss_pred -chhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCe
Confidence 566667789999999999999999987542211100000000 00111111111 1235778999999999999
Q ss_pred ceEEeecCC
Q 014247 262 PSVETITGE 270 (428)
Q Consensus 262 ~~~~~~~~~ 270 (428)
+.++.+...
T Consensus 274 v~~~d~s~~ 282 (340)
T PLN02244 274 IKTEDWSEH 282 (340)
T ss_pred eEeeeCcHH
Confidence 887766644
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.73 E-value=4e-17 Score=134.02 Aligned_cols=107 Identities=32% Similarity=0.405 Sum_probs=89.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc-ccccCCCceeEEEEec-c
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV-EDVEIDEEVDVIISEW-M 187 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~l~~~~~~DlVvs~~-~ 187 (428)
|+.+|||||||+|.++..+++. +..+|+|+|+| .+++.|++++...+..++++++++|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5789999999999999999993 34489999999 99999999998888888999999999 5555558899999976 2
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...+....+...+++.+.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2223333668899999999999999999753
No 15
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=3.2e-17 Score=152.94 Aligned_cols=174 Identities=22% Similarity=0.197 Sum_probs=130.4
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
.+..+.+.+.+.+.+|++|||||||.|.+++.+|+....+|+|+++| ++.+.+++++...|++.+++++..|..++.
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--
Confidence 34566778888899999999999999999999999833499999999 999999999999999989999999999877
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHh
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQ 256 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (428)
++||.|||-.|...+.. ...+.+++.++++|+|||++++.+.+..-.+......| ....+|...+-..++.+.....+
T Consensus 136 e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~-i~~yiFPgG~lPs~~~i~~~~~~ 213 (283)
T COG2230 136 EPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDF-IDKYIFPGGELPSISEILELASE 213 (283)
T ss_pred cccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHH-HHHhCCCCCcCCCHHHHHHHHHh
Confidence 56999999663333322 23899999999999999999976543322111000111 11123333333456777777889
Q ss_pred cCCCCceEEeecCCccccC
Q 014247 257 CAFEEPSVETITGENVLTW 275 (428)
Q Consensus 257 ~Gf~~~~~~~~~~~~~ls~ 275 (428)
+||.+..++.+.+++..+.
T Consensus 214 ~~~~v~~~~~~~~hYa~Tl 232 (283)
T COG2230 214 AGFVVLDVESLRPHYARTL 232 (283)
T ss_pred cCcEEehHhhhcHHHHHHH
Confidence 9999888888777665543
No 16
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.72 E-value=5.6e-17 Score=151.21 Aligned_cols=169 Identities=20% Similarity=0.250 Sum_probs=121.6
Q ss_pred ccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc
Q 014247 91 IKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR 169 (428)
Q Consensus 91 ~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d 169 (428)
+..+.|.....+.+...+....|++|||||||+|..+..++++|++.|+|+|.+ ......+-..+-.+....+.++..-
T Consensus 94 IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplg 173 (315)
T PF08003_consen 94 IDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLG 173 (315)
T ss_pred ecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcc
Confidence 444566666677788888788999999999999999999999999999999999 5443322222222233345555556
Q ss_pred cccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeE---eecCCccchhhhhhhhhccCCCC
Q 014247 170 VEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYM---APVTHPDRYSESIDFWRNVYGID 246 (428)
Q Consensus 170 ~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 246 (428)
+++++..+.||+|+|.. ++.|..++-..|..++..|+|||.+|+.+..+-. ..+....+|....+.| +-.+
T Consensus 174 vE~Lp~~~~FDtVF~MG---VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~---FiPs 247 (315)
T PF08003_consen 174 VEDLPNLGAFDTVFSMG---VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW---FIPS 247 (315)
T ss_pred hhhccccCCcCEEEEee---ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE---EeCC
Confidence 77877678999999954 6777888999999999999999999976543221 1122234454433322 3346
Q ss_pred cchhHHHHHhcCCCCceEE
Q 014247 247 MSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 247 ~~~l~~~l~~~Gf~~~~~~ 265 (428)
...+..|++++||..+.+.
T Consensus 248 ~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 248 VAALKNWLERAGFKDVRCV 266 (315)
T ss_pred HHHHHHHHHHcCCceEEEe
Confidence 8899999999999986544
No 17
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.72 E-value=3.5e-17 Score=154.87 Aligned_cols=168 Identities=23% Similarity=0.280 Sum_probs=113.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
...+.+.+.+...+|.+|||||||.|.++..+|+. |+ +|+||.+| ++.+.+++++++.|+.+++++...|..+++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--
Confidence 34556677778899999999999999999999998 77 89999999 999999999999999999999999999876
Q ss_pred CceeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCcc----chhhhhhhhhccCCCCcchh
Q 014247 177 EEVDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD----RYSESIDFWRNVYGIDMSAM 250 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l 250 (428)
.+||.|+|-. ++.|. ...+.+++.+.++|+|||++++...+....+..... .|. ....|+...-..++.+
T Consensus 126 ~~fD~IvSi~---~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i-~kyiFPgg~lps~~~~ 201 (273)
T PF02353_consen 126 GKFDRIVSIE---MFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFI-RKYIFPGGYLPSLSEI 201 (273)
T ss_dssp -S-SEEEEES---EGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHH-HHHTSTTS---BHHHH
T ss_pred CCCCEEEEEe---chhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEE-EEeeCCCCCCCCHHHH
Confidence 5999999965 34443 568999999999999999999765433211110000 111 1122333333346677
Q ss_pred HHHHHhcCCCCceEEeecCCccc
Q 014247 251 MPLAKQCAFEEPSVETITGENVL 273 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~~~~~~~~l 273 (428)
...+++.||++..++.+..++..
T Consensus 202 ~~~~~~~~l~v~~~~~~~~hY~~ 224 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLGRHYAR 224 (273)
T ss_dssp HHHHHHTT-EEEEEEE-HHHHHH
T ss_pred HHHHhcCCEEEEEEEEcCcCHHH
Confidence 77778899998888777655433
No 18
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.72 E-value=3.2e-16 Score=148.18 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=115.3
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHH--CCCCCcEEEEEccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKA--NNLTDKVIVLHGRVED 172 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~--~~~~~~v~~~~~d~~~ 172 (428)
..+++.+.+.+...++.+|||+|||+|.++..+++. + ..+|+|+|+| +|++.|+++... .....+++++++|+++
T Consensus 59 ~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 59 RIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 345555555556678899999999999999998876 3 2489999999 999999876542 2233469999999999
Q ss_pred ccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch---h--------------h
Q 014247 173 VEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY---S--------------E 234 (428)
Q Consensus 173 l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~---~--------------~ 234 (428)
++++ ++||+|++.. .+++..++..+++++.++|||||++++........+.. ...+ . +
T Consensus 139 lp~~~~sfD~V~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (261)
T PLN02233 139 LPFDDCYFDAITMGY---GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFT-TSMQEWMIDNVVVPVATGYGLAK 214 (261)
T ss_pred CCCCCCCEeEEEEec---ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHH-HHHHHHHHhhhhhHHHHHhCChH
Confidence 9886 7899999865 66777789999999999999999988654321100000 0000 0 0
Q ss_pred h-hhhhhc-cCCCCcchhHHHHHhcCCCCceEEe
Q 014247 235 S-IDFWRN-VYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 235 ~-~~~~~~-~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
. ...+.. ...++..++.++++++||+.+....
T Consensus 215 ~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 215 EYEYLKSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 0 000001 1234678889999999999876544
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.69 E-value=1.1e-15 Score=142.13 Aligned_cols=168 Identities=22% Similarity=0.270 Sum_probs=120.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
...+++.+.+.+...++.+|||+|||+|.++..+++. + ..+|+|+|++ .+++.|++++...++ ++++++++|+.++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 108 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL 108 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC
Confidence 4455666777777778899999999999999999876 3 3489999999 999999999887777 4699999999887
Q ss_pred cCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeE---------------eecCCcc---chhh
Q 014247 174 EID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYM---------------APVTHPD---RYSE 234 (428)
Q Consensus 174 ~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~---------------~~~~~~~---~~~~ 234 (428)
+++ ++||+|++.. .+.+..+...+++++.++|+|||.+++....... .|..... .+.+
T Consensus 109 ~~~~~~fD~V~~~~---~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 185 (231)
T TIGR02752 109 PFDDNSFDYVTIGF---GLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKE 185 (231)
T ss_pred CCCCCCccEEEEec---ccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHH
Confidence 765 7899999864 5666677889999999999999998864321100 0000000 0000
Q ss_pred hhhhhhc-cCCCCcchhHHHHHhcCCCCceEEeec
Q 014247 235 SIDFWRN-VYGIDMSAMMPLAKQCAFEEPSVETIT 268 (428)
Q Consensus 235 ~~~~~~~-~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 268 (428)
....+.. ...++..++..+++++||+.+.+..+.
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 186 YSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 0000000 123467889999999999988766543
No 20
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.69 E-value=9.6e-17 Score=145.44 Aligned_cols=183 Identities=20% Similarity=0.201 Sum_probs=124.1
Q ss_pred hHHHhhhccchhhhh------hccChhhHHHHHHHHHhccC-CCC------CCEEEEEcCCCcHHHHHHHHcCCCeEEEE
Q 014247 75 VAYFHSYAHVGIHEE------MIKDRVRTETYRAAIMQNQS-FIE------GKVVVDVGCGTGILSIFCAQAGAKRVYAV 141 (428)
Q Consensus 75 ~~~f~~y~~~~~~~~------~~~d~~r~~~~~~~i~~~~~-~~~------~~~VLDiGcGtG~ls~~la~~g~~~V~gi 141 (428)
..-|+..+..+|+++ ...+..|....++-+..... ..| |++|||+|||+|+++..||+.|+ .|+||
T Consensus 39 V~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GI 117 (282)
T KOG1270|consen 39 VKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGI 117 (282)
T ss_pred HHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEee
Confidence 344555554443332 23345666666666666652 233 48899999999999999999987 99999
Q ss_pred eCh-HHHHHHHHHHHHCCCCC-----cEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 142 DAS-DIAVQANEVVKANNLTD-----KVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 142 D~s-~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
|++ .|++.|++....+...+ ++++.+.+++++. ++||+|+|.- +++|..++.+++..+.++|||||.++
T Consensus 118 D~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse---vleHV~dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 118 DASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE---VLEHVKDPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred cccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH---HHHHHhCHHHHHHHHHHHhCCCCceE
Confidence 999 99999999855443333 4778888888765 6699999965 88899999999999999999999999
Q ss_pred ccCCeeeEeecCCccchhhhhhhhhcc------CCCCcchhHHHHHhcCCCCce
Q 014247 216 PSYATLYMAPVTHPDRYSESIDFWRNV------YGIDMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~Gf~~~~ 263 (428)
+++.+--.......-.+.+..-.|-.. -.++..++..++..+++....
T Consensus 193 ittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~ 246 (282)
T KOG1270|consen 193 ITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVND 246 (282)
T ss_pred eeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhh
Confidence 887653322222222222221111111 124556667777777665443
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.69 E-value=2e-16 Score=149.37 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=112.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~~ 187 (428)
.++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|++++...++.++++++++|+.++. .+++||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~- 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA- 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh-
Confidence 4567999999999999999999876 89999999 999999999998888778999999998874 247899999865
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC--ccchhhh---h-----hhhhccCCCCcchhHHHHHhc
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH--PDRYSES---I-----DFWRNVYGIDMSAMMPLAKQC 257 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~--~~~~~~~---~-----~~~~~~~~~~~~~l~~~l~~~ 257 (428)
++++..++..+++++.++|||||.+++...+........ ...+... . ......++++.+.+..+++++
T Consensus 121 --vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~a 198 (255)
T PRK11036 121 --VLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEA 198 (255)
T ss_pred --HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHC
Confidence 666667788999999999999999976432211000000 0000000 0 000113457788999999999
Q ss_pred CCCCceEEe
Q 014247 258 AFEEPSVET 266 (428)
Q Consensus 258 Gf~~~~~~~ 266 (428)
||+...+.-
T Consensus 199 Gf~~~~~~g 207 (255)
T PRK11036 199 GWQIMGKTG 207 (255)
T ss_pred CCeEeeeee
Confidence 998765443
No 22
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.64 E-value=4.7e-15 Score=140.39 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=113.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Cce
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEV 179 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~ 179 (428)
..+...+...++.+|||||||+|..+..+++....+|+|+|++ .++..|+++... .+++.++.+|+.+.+++ ++|
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCe
Confidence 3444556678899999999999999998887523389999999 999999887543 34699999999887765 789
Q ss_pred eEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh-hhhhhhc--cCCCCcchhHHHH
Q 014247 180 DVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRN--VYGIDMSAMMPLA 254 (428)
Q Consensus 180 DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~l~~~l 254 (428)
|+|++.. .+.|. .+...+++++.++|||||.+++...... ....+.. ...++.. ....+...+..++
T Consensus 119 D~V~s~~---~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRD---AILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD-----KIENWDEEFKAYIKKRKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhh---hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc-----cccCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 9999853 33333 3689999999999999999997643211 0111111 1112211 1234678899999
Q ss_pred HhcCCCCceEEeecC
Q 014247 255 KQCAFEEPSVETITG 269 (428)
Q Consensus 255 ~~~Gf~~~~~~~~~~ 269 (428)
+++||+.+..+....
T Consensus 191 ~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 191 KSCNFQNVVAKDISD 205 (263)
T ss_pred HHCCCCeeeEEeCcH
Confidence 999999888776543
No 23
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.64 E-value=5.9e-15 Score=132.94 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=101.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC------CeEEEEeCh-HHHHHHHHHHHHCCCCCc--EEEEE
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GA------KRVYAVDAS-DIAVQANEVVKANNLTDK--VIVLH 167 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~------~~V~giD~s-~~~~~a~~~~~~~~~~~~--v~~~~ 167 (428)
+.|.+.....+...++.++||++||||.+++.+.+. +. ++|+.+|+| +|+..++++..+.++... +.+++
T Consensus 86 RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 86 RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 356777778888888999999999999999999886 33 699999999 999999999888787655 99999
Q ss_pred cccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 168 GRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 168 ~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
+|+++++++ .+||..++. +.+.+..+++..+++++|+|||||++.
T Consensus 166 ~dAE~LpFdd~s~D~yTia---fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIA---FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred CCcccCCCCCCcceeEEEe---cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 999999997 899999964 488888899999999999999999887
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=4.1e-15 Score=129.19 Aligned_cols=106 Identities=30% Similarity=0.440 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-c-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEe
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQ-A-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISE 185 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~-~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~ 185 (428)
.++.+|||+|||+|.++..+++ . ...+++|+|+| .+++.|+++++..++. +++|+++|+.+++ ++++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 4578999999999999999994 3 34589999999 9999999999999987 6999999999977 44799999997
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
. .+.+..++..+++.+.++|++||++++....
T Consensus 81 ~---~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 G---VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp S---TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C---chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6 5677788899999999999999999876543
No 25
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=2.6e-15 Score=141.84 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=104.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
.+...+...++.+|||||||+|.++..+++.. ..+|+|+|+| .|++.|++. +++++++|++++...++||
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD 91 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTD 91 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCce
Confidence 34455566788999999999999999999872 3489999999 999888652 3789999998876558999
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhh--hhhhc----------cCCCCcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI--DFWRN----------VYGIDMS 248 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~ 248 (428)
+|++.. .+++..++..+++++.++|||||.+++........+.. ....... ..|.. ....+..
T Consensus 92 ~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 92 VVVSNA---ALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSH--AAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred EEEEeh---hhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhH--HHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 999976 66677788999999999999999998754321100100 0000000 11211 1123567
Q ss_pred hhHHHHHhcCCCCc
Q 014247 249 AMMPLAKQCAFEEP 262 (428)
Q Consensus 249 ~l~~~l~~~Gf~~~ 262 (428)
.+..+++++||+..
T Consensus 167 ~~~~~l~~aGf~v~ 180 (255)
T PRK14103 167 GYAELLTDAGCKVD 180 (255)
T ss_pred HHHHHHHhCCCeEE
Confidence 88999999999743
No 26
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=4.7e-15 Score=134.41 Aligned_cols=109 Identities=24% Similarity=0.334 Sum_probs=90.3
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEE
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVII 183 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVv 183 (428)
.+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.+++++...++.+ +++...|+.+++++++||+|+
T Consensus 23 ~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~ 100 (197)
T PRK11207 23 LEAVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFIL 100 (197)
T ss_pred HHhcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEE
Confidence 3344456778999999999999999999876 89999999 99999999988888754 899999998877778899999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+..+.+.+ ...++..+++++.++|+|||.+++
T Consensus 101 ~~~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFL-EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 97633222 334688999999999999998654
No 27
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.62 E-value=4.2e-15 Score=137.60 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=113.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhh
Q 014247 114 KVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYML 191 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l 191 (428)
++|||||||+|.++..+++.. ..+|+|+|+| .++..|++++...++.++++++.+|+...+.+++||+|++.. ++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~---~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFE---VI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHH---HH
Confidence 479999999999999998863 3489999999 999999999999899889999999997766668999999855 56
Q ss_pred cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCC
Q 014247 192 LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGE 270 (428)
Q Consensus 192 ~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~ 270 (428)
++..+...+++++.++|+|||.+++...... . +......+...+..+...+.+++.++||.......+..+
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~-----~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIAN---L-----LSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLE 148 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccc---c-----CccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence 6667789999999999999999997643210 0 000000011223456778899999999998887776554
No 28
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=6.3e-15 Score=138.42 Aligned_cols=106 Identities=20% Similarity=0.328 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
.++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|++++...+...+++++++|+.+++.+ .+|+|++..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence 46789999999999999888872 33499999999 99999999998888877899999999988764 599999865
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+.+. ......+++++++.|||||.+++..
T Consensus 134 ~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 333332 3346789999999999999998865
No 29
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=4.4e-15 Score=117.52 Aligned_cols=93 Identities=29% Similarity=0.412 Sum_probs=77.9
Q ss_pred EEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcch
Q 014247 117 VDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYE 194 (428)
Q Consensus 117 LDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~ 194 (428)
||+|||+|..+..+++.+..+|+++|++ ++++.++++.... ++.++.+|+++++++ ++||+|++.. .+++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~---~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNS---VLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEES---HGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcccccccccccccc---ceeec
Confidence 8999999999999999956699999999 9999988876543 467999999999886 9999999976 55555
Q ss_pred hhHHHHHHHHhcccccCeEEEc
Q 014247 195 SMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 195 ~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7899999999999999999874
No 30
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.61 E-value=1.7e-14 Score=139.87 Aligned_cols=156 Identities=22% Similarity=0.225 Sum_probs=110.9
Q ss_pred HHHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 97 TETYRAAIMQNQSF-IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 97 ~~~~~~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
.+..++.+.+.... .++.+|||||||+|.++..+++. +..+|+++|.| .|++.|+++... .+++++.+|++++
T Consensus 97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l 172 (340)
T PLN02490 97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL 172 (340)
T ss_pred hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC
Confidence 34444444443332 46789999999999999888875 44589999999 999998887542 3588999999998
Q ss_pred cCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh--hhhhhhccCCCCcchh
Q 014247 174 EID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE--SIDFWRNVYGIDMSAM 250 (428)
Q Consensus 174 ~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l 250 (428)
+++ ++||+|++.. .+++..+...+++++.++|+|||++++... ... ..+.. ....|. .....+++
T Consensus 173 p~~~~sFDvVIs~~---~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~------~~p-~~~~~r~~~~~~~--~~~t~eEl 240 (340)
T PLN02490 173 PFPTDYADRYVSAG---SIEYWPDPQRGIKEAYRVLKIGGKACLIGP------VHP-TFWLSRFFADVWM--LFPKEEEY 240 (340)
T ss_pred CCCCCceeEEEEcC---hhhhCCCHHHHHHHHHHhcCCCcEEEEEEe------cCc-chhHHHHhhhhhc--cCCCHHHH
Confidence 765 7899999865 556666788999999999999999876321 111 11111 011121 12357889
Q ss_pred HHHHHhcCCCCceEEeec
Q 014247 251 MPLAKQCAFEEPSVETIT 268 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~~~~ 268 (428)
.++++++||+.+.++.+.
T Consensus 241 ~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 241 IEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred HHHHHHCCCeEEEEEEcC
Confidence 999999999988766543
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.60 E-value=4.1e-15 Score=134.56 Aligned_cols=110 Identities=21% Similarity=0.271 Sum_probs=87.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeE
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDV 181 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~Dl 181 (428)
.+.+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.+++++..+++. +.+...|+...+++++||+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCE
Confidence 334444445678999999999999999999876 89999999 9999999988887774 7788888876666678999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|++..+.+.+ ...+...+++++.++|+|||++++
T Consensus 98 I~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 98 IFSTVVFMFL-QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EEEecccccC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 9997632222 234678999999999999998654
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.60 E-value=2.2e-14 Score=136.79 Aligned_cols=151 Identities=21% Similarity=0.348 Sum_probs=112.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIIS 184 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs 184 (428)
...++.+|||||||+|..+..+++. +. .+|+|+|++ .+++.|+++....++. +++++.+|+++++++ +.||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEE
Confidence 3468899999999999988877775 44 379999999 9999999998888775 699999999988765 68999998
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhcc--CCCCcchhHHHHHhcCCCCc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNV--YGIDMSAMMPLAKQCAFEEP 262 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~Gf~~~ 262 (428)
+. .+++..+...+++++.++|||||++++...... . ..+.........|... ..++..++..+++++||..+
T Consensus 153 ~~---v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 153 NC---VINLSPDKERVFKEAFRVLKPGGRFAISDVVLR--G-ELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred cC---cccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc--C-CCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 76 455566788999999999999999997643211 0 1111111222233221 22467789999999999987
Q ss_pred eEEe
Q 014247 263 SVET 266 (428)
Q Consensus 263 ~~~~ 266 (428)
.+..
T Consensus 227 ~i~~ 230 (272)
T PRK11873 227 TIQP 230 (272)
T ss_pred EEEe
Confidence 6543
No 33
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.59 E-value=1.5e-14 Score=128.69 Aligned_cols=109 Identities=23% Similarity=0.341 Sum_probs=87.5
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEE
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
+.+.+...++.++||+|||.|+.+++||+.|. .|+++|.| ..++.+++.++..++. |+....|+.+..+++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEE
Confidence 33445556778999999999999999999999 89999999 8888899988888885 99999999988888899999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++..+..++ .....+.+++.+...++|||.+++
T Consensus 99 ~st~v~~fL-~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 99 VSTVVFMFL-QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EEESSGGGS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEEeccC-CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 987544444 455689999999999999998876
No 34
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.59 E-value=1.5e-15 Score=132.65 Aligned_cols=145 Identities=24% Similarity=0.264 Sum_probs=100.4
Q ss_pred HHHHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-cC
Q 014247 99 TYRAAIMQNQS-FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-EI 175 (428)
Q Consensus 99 ~~~~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~~ 175 (428)
.+.+.+.+... ..++.+|||||||+|.++..+++.|. +|+|+|++ .++.. ..+.....+.... ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFP 75 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCH
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhcc
Confidence 44455554443 47789999999999999999999888 99999999 77765 1133333333332 23
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhh----hccCCCCcchhH
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFW----RNVYGIDMSAMM 251 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~ 251 (428)
+++||+|+|.. ++++..++..+++.+.++|||||.+++....... .....+.. ..++ .....++.+.+.
T Consensus 76 ~~~fD~i~~~~---~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (161)
T PF13489_consen 76 DGSFDLIICND---VLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD---PSPRSFLK-WRYDRPYGGHVHFFSPDELR 148 (161)
T ss_dssp SSSEEEEEEES---SGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS---HHHHHHHH-CCGTCHHTTTTEEBBHHHHH
T ss_pred ccchhhHhhHH---HHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc---hhhhHHHh-cCCcCccCceeccCCHHHHH
Confidence 48999999976 7777888999999999999999999986543211 00000000 0111 123446788999
Q ss_pred HHHHhcCCCCc
Q 014247 252 PLAKQCAFEEP 262 (428)
Q Consensus 252 ~~l~~~Gf~~~ 262 (428)
.+++++||+.+
T Consensus 149 ~ll~~~G~~iv 159 (161)
T PF13489_consen 149 QLLEQAGFEIV 159 (161)
T ss_dssp HHHHHTTEEEE
T ss_pred HHHHHCCCEEE
Confidence 99999999764
No 35
>PRK08317 hypothetical protein; Provisional
Probab=99.58 E-value=7.5e-14 Score=130.04 Aligned_cols=165 Identities=20% Similarity=0.239 Sum_probs=118.3
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
..+++.+.+.+...++.+|||+|||+|.++..+++.. ..+|+|+|++ .++..++++.. ....++.++.+|+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC
Confidence 3556666777777888999999999999999998862 3589999999 88988887732 23346999999998876
Q ss_pred CC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC--ccchhhhhhhhhcc--CCCCcch
Q 014247 175 ID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH--PDRYSESIDFWRNV--YGIDMSA 249 (428)
Q Consensus 175 ~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~ 249 (428)
.+ ++||+|++.. .+.+..++..+++++.++|+|||.+++.........+.. .....+....|... .......
T Consensus 83 ~~~~~~D~v~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (241)
T PRK08317 83 FPDGSFDAVRSDR---VLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRR 159 (241)
T ss_pred CCCCCceEEEEec---hhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHH
Confidence 54 7899999866 666777889999999999999999987654321111111 11222333333321 1122456
Q ss_pred hHHHHHhcCCCCceEEee
Q 014247 250 MMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 250 l~~~l~~~Gf~~~~~~~~ 267 (428)
+..+++++||..+.++..
T Consensus 160 ~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 160 LPGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHHHcCCCceeEEEE
Confidence 888999999998776544
No 36
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.57 E-value=3.3e-14 Score=127.12 Aligned_cols=99 Identities=32% Similarity=0.394 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
.++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++.+++.+ ++++++|+.++...++||+|++..+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCCCCCccEEEEccc-
Confidence 34889999999999999998874 44599999999 99999999999999876 9999999998766679999998641
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..++.+++.+.++|+|||.+++.
T Consensus 122 ------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 122 ------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 34788999999999999999853
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.57 E-value=4.1e-14 Score=145.59 Aligned_cols=155 Identities=23% Similarity=0.249 Sum_probs=113.6
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeE
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDV 181 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~Dl 181 (428)
+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .++..|+++.. +...+++|+.+|+.+.+++ ++||+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~ 335 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDV 335 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEE
Confidence 34444456788999999999999998988633389999999 99999988764 3445799999999887765 68999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhc--cCCCCcchhHHHHHhcCC
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRN--VYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~Gf 259 (428)
|+|.. .+.|..++..++++++++|||||.+++...... +......+. .++.. ....+...+.++++++||
T Consensus 336 I~s~~---~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~--~~~~~~~~~---~~~~~~g~~~~~~~~~~~~l~~aGF 407 (475)
T PLN02336 336 IYSRD---TILHIQDKPALFRSFFKWLKPGGKVLISDYCRS--PGTPSPEFA---EYIKQRGYDLHDVQAYGQMLKDAGF 407 (475)
T ss_pred EEECC---cccccCCHHHHHHHHHHHcCCCeEEEEEEeccC--CCCCcHHHH---HHHHhcCCCCCCHHHHHHHHHHCCC
Confidence 99965 566777899999999999999999997653211 111111111 11111 122356788999999999
Q ss_pred CCceEEeec
Q 014247 260 EEPSVETIT 268 (428)
Q Consensus 260 ~~~~~~~~~ 268 (428)
+.+.++.+.
T Consensus 408 ~~i~~~d~~ 416 (475)
T PLN02336 408 DDVIAEDRT 416 (475)
T ss_pred eeeeeecch
Confidence 988776554
No 38
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.56 E-value=2.9e-14 Score=133.33 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
.++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|++++...+...+++++++|+.+++++ .+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 46789999999999999988875 23489999999 99999999988776666799999999988765 589998865
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
..+.+ ...+...+++++.+.|+|||.+++...
T Consensus 131 ~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFL-PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhC-CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 32222 223578899999999999999998753
No 39
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.56 E-value=4.4e-14 Score=126.05 Aligned_cols=99 Identities=30% Similarity=0.440 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
.++.+|||+|||+|.++..++..+ ..+|+|+|.+ .+++.++++++.+++.+ ++++++|+.++...++||+|+++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~~~~fD~I~s~~-- 117 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQHEEQFDVITSRA-- 117 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccccCCccEEEehh--
Confidence 458899999999999999988764 4589999999 99999999998888864 999999999876568999999854
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ .+++.+++.+.++|+|||.+++.
T Consensus 118 --~---~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 --L---ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred --h---hCHHHHHHHHHHhcCCCCEEEEE
Confidence 2 23667788889999999999853
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.56 E-value=4.1e-14 Score=130.55 Aligned_cols=158 Identities=20% Similarity=0.210 Sum_probs=110.8
Q ss_pred HHHHHHhccC--CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQS--FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+.+.+.+.+. ..++.+|||+|||+|.++..+++.+. +|+|+|++ .++..|++++...+..+++.+.++|+.+++
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence 3344444443 45789999999999999999998865 89999999 999999999888777667999999998876
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh------ccCCCCcchh
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR------NVYGIDMSAM 250 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l 250 (428)
++||+|++..+...+ ....+..+++++.+++++++.+.+.....+.. .......+|. ..+.++..++
T Consensus 118 ~~fD~ii~~~~l~~~-~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
T TIGR02021 118 GEFDIVVCMDVLIHY-PASDMAKALGHLASLTKERVIFTFAPKTAWLA------FLKMIGELFPGSSRATSAYLHPMTDL 190 (219)
T ss_pred CCcCEEEEhhHHHhC-CHHHHHHHHHHHHHHhCCCEEEEECCCchHHH------HHHHHHhhCcCcccccceEEecHHHH
Confidence 789999985421111 23457788999999998877766543221110 0000111121 1233467889
Q ss_pred HHHHHhcCCCCceEEee
Q 014247 251 MPLAKQCAFEEPSVETI 267 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~~~ 267 (428)
.++++++||+......+
T Consensus 191 ~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 191 ERALGELGWKIVREGLV 207 (219)
T ss_pred HHHHHHcCceeeeeecc
Confidence 99999999998765533
No 41
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.55 E-value=2.1e-13 Score=127.23 Aligned_cols=115 Identities=23% Similarity=0.323 Sum_probs=94.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+...+...+...++.+|||+|||+|.++..+++.+ ..+|+++|++ .+++.+++++..+++..++.++.+|+.+++.+
T Consensus 39 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 39 WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 34444444445577899999999999999999886 3699999999 99999999887766666799999999887654
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++||+|++.. .+++..++..+++.+.++|+|||.+++.
T Consensus 119 ~~~~D~I~~~~---~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 119 DNSFDAVTIAF---GLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred CCCccEEEEec---ccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 7899999754 5666777899999999999999988764
No 42
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.54 E-value=5.4e-14 Score=133.77 Aligned_cols=111 Identities=31% Similarity=0.446 Sum_probs=86.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
++...+++.+.. .++++|||+|||||.|++.+++.|+++|+|+|++ ..++.|++++..|++.+++.+. ...+. .
T Consensus 148 T~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~ 222 (295)
T PF06325_consen 148 TRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-V 222 (295)
T ss_dssp HHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-C
T ss_pred HHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-c
Confidence 455666777664 6789999999999999999999999999999999 8899999999999999877663 22222 1
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.++||+|++|.+... +..++..+.++|+|||.++++.
T Consensus 223 ~~~~dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 223 EGKFDLVVANILADV------LLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp CS-EEEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEEE
T ss_pred cccCCEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEcc
Confidence 389999999874433 4567778889999999999753
No 43
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.53 E-value=6.3e-14 Score=123.18 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=101.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
|...+...+....-.++||+|||.|.++..||.+ +.+++++|+| ..++.|+++... . .+|+++++|+.+..++++
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~-~~V~~~~~dvp~~~P~~~ 106 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--L-PHVEWIQADVPEFWPEGR 106 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--C-CCeEEEECcCCCCCCCCC
Confidence 3333433455566679999999999999999998 6799999999 899999988754 3 359999999998877799
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCA 258 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 258 (428)
||+||..-++|++....++..++..+...|+|||.+|+.+.. .+....|.+.+ ..+.+..++.+.-
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r------------d~~c~~wgh~~--ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR------------DANCRRWGHAA--GAETVLEMLQEHL 172 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-------------HHHHHHTT-S----HHHHHHHHHHHS
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec------------CCcccccCccc--chHHHHHHHHHHh
Confidence 999999888888877777999999999999999999975421 33455687654 4667777777653
No 44
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=6e-14 Score=132.10 Aligned_cols=114 Identities=32% Similarity=0.383 Sum_probs=90.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
+....+++.+.. .++++|||+|||+|.|+..+++.|+++|+|+|++ -.++.|+++++.|+....+.....+....+.
T Consensus 149 T~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~ 226 (300)
T COG2264 149 TSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE 226 (300)
T ss_pred HHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc
Confidence 445566666665 5899999999999999999999999999999999 7888899999999887533333334444333
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.++||+||+|.+.. -+..+...+.++|||||.++++.
T Consensus 227 ~~~~DvIVANILA~------vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 227 NGPFDVIVANILAE------VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cCcccEEEehhhHH------HHHHHHHHHHHHcCCCceEEEEe
Confidence 47999999986332 25577888999999999999764
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.52 E-value=1.9e-13 Score=126.00 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=112.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.+...+...+...++.+|||+|||+|.++..+++.+. .+++++|++ .++..++++.. ...++.++.+|+.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC
Confidence 4445555555556789999999999999999998855 489999999 88888887764 33468999999988765
Q ss_pred C-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc---hhh-----hhhhhh------
Q 014247 176 D-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR---YSE-----SIDFWR------ 240 (428)
Q Consensus 176 ~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~---~~~-----~~~~~~------ 240 (428)
+ ++||+|++.. .+.+..++..+++.+.++|+|||++++.......... .... +.. ....+.
T Consensus 103 ~~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (223)
T TIGR01934 103 EDNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANAL-LKKFYKFYLKNVLPSIGGLISKNAEAY 178 (223)
T ss_pred CCCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchh-hHHHHHHHHHHhhhhhhhhhcCCchhh
Confidence 4 6899999865 5666777899999999999999999864321110000 0000 000 000000
Q ss_pred ----c--cCCCCcchhHHHHHhcCCCCceEEee
Q 014247 241 ----N--VYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 241 ----~--~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
. ...++..++..++.++||+.+.++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 211 (223)
T TIGR01934 179 TYLPESIRAFPSQEELAAMLKEAGFEEVRYRSL 211 (223)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccceeeee
Confidence 0 11245677899999999998776654
No 46
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=8.9e-14 Score=131.58 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=90.0
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
.+.+...+...++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++. .++.++.+|+.++..+.+
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~ 93 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQA 93 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCC
Confidence 444555556677899999999999999999886 34599999999 9999888763 248899999988766679
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
||+|++.. .+++..+...+++++.++|+|||.+++..
T Consensus 94 fD~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 94 LDLIFANA---SLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccEEEEcc---ChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999976 56666778899999999999999998764
No 47
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.52 E-value=1.2e-13 Score=122.26 Aligned_cols=104 Identities=30% Similarity=0.402 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCC-eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~-~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
++.+|||+|||+|.++..+++.+.. +|+++|++ .+++.+++++..+++.+ ++++..|..+-..+++||+|+|++..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 6789999999999999999998665 79999999 99999999999999987 999999987654468999999997422
Q ss_pred hhc--chhhHHHHHHHHhcccccCeEEEc
Q 014247 190 MLL--YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 190 ~l~--~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
... .......+++...++|+|||.+++
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 221 112478889999999999999864
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.51 E-value=1.2e-13 Score=132.60 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.+++++..+++ ++++...|+.....+++||+|++..+.+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhh
Confidence 4556999999999999999999876 89999999 999999999988887 4888889988766678999999976333
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+ ...+...+++++.++|+|||.+++
T Consensus 196 ~l-~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 196 FL-NRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 33 334688999999999999998664
No 49
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=1.1e-13 Score=130.37 Aligned_cols=110 Identities=22% Similarity=0.310 Sum_probs=89.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
...+.+.+.+...++.+|||+|||+|.++..+++.+. +|+++|+| .|++.|+++.. .+.++++|+++++++
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCC
Confidence 3444555555545678999999999999999988765 89999999 99998877632 246889999988765
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|+++. .+.+..++..++.++.++|+|||.+++..
T Consensus 102 ~~fD~V~s~~---~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 102 ATFDLAWSNL---AVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CcEEEEEECc---hhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 6899999976 56677789999999999999999998754
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.50 E-value=7.4e-13 Score=119.08 Aligned_cols=135 Identities=20% Similarity=0.234 Sum_probs=101.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
+..+...+...++.+|||+|||+|.++..+++.+ ..+|+++|++ .+++.|++++..+++. +++++.+|+.. ..+++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~~~ 97 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELPGK 97 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcCcC
Confidence 3344455555688999999999999999999874 3589999999 9999999999888775 59999998753 34578
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCA 258 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 258 (428)
||+|++.. .. ..+..+++.+.++|+|||.+++.... .-+...+..++++.|
T Consensus 98 ~D~v~~~~---~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~-----------------------~~~~~~~~~~l~~~g 148 (187)
T PRK08287 98 ADAIFIGG---SG---GNLTAIIDWSLAHLHPGGRLVLTFIL-----------------------LENLHSALAHLEKCG 148 (187)
T ss_pred CCEEEECC---Cc---cCHHHHHHHHHHhcCCCeEEEEEEec-----------------------HhhHHHHHHHHHHCC
Confidence 99999854 11 23567888999999999999863210 012345667788899
Q ss_pred CCCceEEe
Q 014247 259 FEEPSVET 266 (428)
Q Consensus 259 f~~~~~~~ 266 (428)
|..+.+..
T Consensus 149 ~~~~~~~~ 156 (187)
T PRK08287 149 VSELDCVQ 156 (187)
T ss_pred CCcceEEE
Confidence 98766543
No 51
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.48 E-value=5.6e-13 Score=124.17 Aligned_cols=159 Identities=25% Similarity=0.208 Sum_probs=111.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCC
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDE 177 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~ 177 (428)
.+.+...+...++.+|||||||+|.++..+++.+. +|+++|++ .++..|++++...+. .+.++..++.+++ ..+
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCC
Confidence 34555555556789999999999999999998866 79999999 999999888776655 4788888888764 347
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch-hhhhhhhh------ccCCCCcchh
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY-SESIDFWR------NVYGIDMSAM 250 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~l 250 (428)
+||+|++.. .+.+..++..+++.+.++|+|||.+++........ ......+ .+....+. ....++..++
T Consensus 114 ~fD~Ii~~~---~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (233)
T PRK05134 114 QFDVVTCME---MLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLK-SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSEL 189 (233)
T ss_pred CccEEEEhh---HhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChH-HHHHHHhhHHHHhhhcCcccCchhhcCCHHHH
Confidence 999999854 56677778899999999999999998764321000 0000000 00000000 0123466789
Q ss_pred HHHHHhcCCCCceEEe
Q 014247 251 MPLAKQCAFEEPSVET 266 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~~ 266 (428)
..+++++||+.+....
T Consensus 190 ~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 190 AAWLRQAGLEVQDITG 205 (233)
T ss_pred HHHHHHCCCeEeeeee
Confidence 9999999999876543
No 52
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.48 E-value=9.7e-13 Score=119.42 Aligned_cols=111 Identities=24% Similarity=0.446 Sum_probs=89.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I 175 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~ 175 (428)
+..+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.+++.++.+|+.+.. .
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 333345566788999999999999999998875 3 3589999999 999999999999887677999999987642 2
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++||+|++.. ....+..+++.+.++|+|||++++.
T Consensus 109 ~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 109 NEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 36899999743 2234778899999999999999863
No 53
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.47 E-value=1e-12 Score=109.56 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=87.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-CC
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-ID 176 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~~ 176 (428)
...+...+...++.+|||+|||+|.++..+++. +..+|+++|++ .+++.+++++...++. +++++.+|+... + ..
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhc
Confidence 333445555567789999999999999999987 34699999999 9999999998888776 489999887652 2 23
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|++.. . ......+++.+.++|+|||.+++..
T Consensus 87 ~~~D~v~~~~---~---~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGG---S---GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECC---c---chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 7899999853 1 1235688999999999999998754
No 54
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.47 E-value=8.8e-13 Score=122.00 Aligned_cols=169 Identities=25% Similarity=0.210 Sum_probs=115.5
Q ss_pred ChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 93 DRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 93 d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
+..|.+.+.+.+........+.+|||+|||+|.++..+++.+. +|+++|++ .++..+++++..++.. ++.+...|+.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 103 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVE 103 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHH
Confidence 3445555555555432234578999999999999999988866 79999999 9999999888776653 4889999988
Q ss_pred cccCC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh-c-----cC
Q 014247 172 DVEID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR-N-----VY 243 (428)
Q Consensus 172 ~l~~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~ 243 (428)
+++.. ++||+|++.. .+.+..++..+++.+.++|+|||.+++.................+....|. . ..
T Consensus 104 ~~~~~~~~~~D~i~~~~---~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (224)
T TIGR01983 104 DLAEKGAKSFDVVTCME---VLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEK 180 (224)
T ss_pred HhhcCCCCCccEEEehh---HHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhh
Confidence 76543 7899999855 566677889999999999999999887543210000000000000000000 0 11
Q ss_pred CCCcchhHHHHHhcCCCCceEEe
Q 014247 244 GIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 244 ~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
.++...+.++++++||+...+..
T Consensus 181 ~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 181 FIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred cCCHHHHHHHHHHcCCeeeeeee
Confidence 23566789999999999876553
No 55
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.47 E-value=1.5e-12 Score=126.29 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=110.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
.+.+.+.....++.+|||||||+|.++..++++. ..+++++|...+++.+++++...++.++++++.+|+.+.+.+ .+
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~ 216 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EA 216 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CC
Confidence 4455566666778899999999999999999873 348999998889999999999999988999999999865554 47
Q ss_pred eEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhh-hh-----cc-CCCCcchh
Q 014247 180 DVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDF-WR-----NV-YGIDMSAM 250 (428)
Q Consensus 180 DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~-~~~~~~~l 250 (428)
|+|++.. +++.. .....+++++++.|+|||++++....+.- + ....+...... .. .. .+....++
T Consensus 217 D~v~~~~---~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 290 (306)
T TIGR02716 217 DAVLFCR---ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD-P--ENPNFDYLSHYILGAGMPFSVLGFKEQARY 290 (306)
T ss_pred CEEEeEh---hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC-C--CCchhhHHHHHHHHcccccccccCCCHHHH
Confidence 9988644 44433 33567999999999999999876532210 1 11111100000 00 01 11235689
Q ss_pred HHHHHhcCCCCce
Q 014247 251 MPLAKQCAFEEPS 263 (428)
Q Consensus 251 ~~~l~~~Gf~~~~ 263 (428)
..+++++||+.+.
T Consensus 291 ~~ll~~aGf~~v~ 303 (306)
T TIGR02716 291 KEILESLGYKDVT 303 (306)
T ss_pred HHHHHHcCCCeeE
Confidence 9999999998764
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.47 E-value=8.4e-13 Score=117.88 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=96.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
..++.+|||+|||+|.++..+++.+. +|+++|++ .+++.+++++..++. +++++.+|+.+.. .++||+|+++...
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNPPY 92 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECCCC
Confidence 35668999999999999999999877 99999999 999999999988776 4899999987654 4689999998632
Q ss_pred hhhcc------------------hhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchh
Q 014247 189 YMLLY------------------ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAM 250 (428)
Q Consensus 189 ~~l~~------------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (428)
+.... ......+++++.++|+|||.+++..... -+...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~-----------------------~~~~~~ 149 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL-----------------------NGEPDT 149 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc-----------------------CChHHH
Confidence 11110 1125678999999999999988632110 123456
Q ss_pred HHHHHhcCCCCceEE
Q 014247 251 MPLAKQCAFEEPSVE 265 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~ 265 (428)
...+++.||....+.
T Consensus 150 ~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 150 FDKLDERGFRYEIVA 164 (179)
T ss_pred HHHHHhCCCeEEEEE
Confidence 677788898765443
No 57
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.47 E-value=1.7e-13 Score=110.43 Aligned_cols=95 Identities=24% Similarity=0.398 Sum_probs=76.2
Q ss_pred EEEEcCCCcHHHHHHHHcC----CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 116 VVDVGCGTGILSIFCAQAG----AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 116 VLDiGcGtG~ls~~la~~g----~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
|||+|||+|..+..+++.. ..+++|+|+| +|++.++++....+. +++++++|+.+++.. ++||+|++.....
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999873 2699999999 999999999887666 589999999998753 7999999943212
Q ss_pred hhcchhhHHHHHHHHhcccccCe
Q 014247 190 MLLYESMLGSVITARDRWLKRGG 212 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG 212 (428)
..........+++++.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 23455678999999999999998
No 58
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.47 E-value=1e-12 Score=123.66 Aligned_cols=129 Identities=29% Similarity=0.400 Sum_probs=95.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+.+.... .++.+|||+|||+|.++..+++.|+.+|+|+|++ .+++.|++++..+++.+++.+..++.
T Consensus 108 ~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~------- 178 (250)
T PRK00517 108 LCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL------- 178 (250)
T ss_pred HHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------
Confidence 3344444432 5789999999999999999998888789999999 99999999999988865565554432
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQC 257 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 257 (428)
+||+|+++... ..+..++..+.++|||||.++++.... -+...+...+.+.
T Consensus 179 ~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------~~~~~v~~~l~~~ 229 (250)
T PRK00517 179 KADVIVANILA------NPLLELAPDLARLLKPGGRLILSGILE-----------------------EQADEVLEAYEEA 229 (250)
T ss_pred CcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEEECcH-----------------------hhHHHHHHHHHHC
Confidence 79999987521 235678889999999999999753210 1234566777888
Q ss_pred CCCCceEE
Q 014247 258 AFEEPSVE 265 (428)
Q Consensus 258 Gf~~~~~~ 265 (428)
||......
T Consensus 230 Gf~~~~~~ 237 (250)
T PRK00517 230 GFTLDEVL 237 (250)
T ss_pred CCEEEEEE
Confidence 99765443
No 59
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.46 E-value=7.3e-13 Score=131.66 Aligned_cols=161 Identities=21% Similarity=0.205 Sum_probs=108.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
.+.+.+.+...++.+|||||||+|.++..+++. |+ +|+|+|+| ++++.|++++. ++ .+++...|..++ +++
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~~~ 228 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--NGQ 228 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--CCC
Confidence 345555666778999999999999999999986 55 89999999 99999998874 33 388888888776 478
Q ss_pred eeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHh
Q 014247 179 VDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQ 256 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (428)
||+|++..+ +.+. ..++.+++++.++|||||.+++......... .....+... ..|...+-..++.+...++
T Consensus 229 fD~Ivs~~~---~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~-~~~~~~i~~-yifp~g~lps~~~i~~~~~- 302 (383)
T PRK11705 229 FDRIVSVGM---FEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD-TNVDPWINK-YIFPNGCLPSVRQIAQASE- 302 (383)
T ss_pred CCEEEEeCc---hhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC-CCCCCCcee-eecCCCcCCCHHHHHHHHH-
Confidence 999998653 3332 3468899999999999999987643211100 001111100 0111112234556665544
Q ss_pred cCCCCceEEeecCCcccc
Q 014247 257 CAFEEPSVETITGENVLT 274 (428)
Q Consensus 257 ~Gf~~~~~~~~~~~~~ls 274 (428)
.||....++.+..++..+
T Consensus 303 ~~~~v~d~~~~~~hy~~T 320 (383)
T PRK11705 303 GLFVMEDWHNFGADYDRT 320 (383)
T ss_pred CCcEEEEEecChhhHHHH
Confidence 588887777777665443
No 60
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.46 E-value=3.4e-13 Score=123.85 Aligned_cols=108 Identities=22% Similarity=0.301 Sum_probs=90.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC---CceeEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID---EEVDVII 183 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~~~DlVv 183 (428)
......+|||+|||+|.+++++|++ ...+++|||+. ++++.|+++++.|+++++|+++++|+.++... .+||+|+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 3345789999999999999999998 54699999999 99999999999999999999999999987543 5799999
Q ss_pred Eecchhhhcc---------------hhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLY---------------ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~---------------~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|++..+-... ..+++.+++...++|||||.+.+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 9984221111 12478999999999999999875
No 61
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.45 E-value=1.2e-12 Score=125.53 Aligned_cols=101 Identities=30% Similarity=0.475 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++++|||+|||+|.++..+++.|+.+|+|+|++ .+++.|++++..+++.+++.+...+.... ..++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH-
Confidence 5789999999999999999999888899999999 99999999999999887788887764332 24789999997632
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+..++..+.++|+|||.++++.
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 235678899999999999998753
No 62
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.45 E-value=4.9e-13 Score=110.52 Aligned_cols=104 Identities=29% Similarity=0.443 Sum_probs=85.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEEEecch
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVIISEWMG 188 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVvs~~~~ 188 (428)
|.+|||+|||+|.++..+++.+..+++|+|++ ..++.|++++..+++.++++++++|+.+.. . .++||+|++++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 56899999999999999999985699999999 899999999999999888999999998875 3 4899999998742
Q ss_pred hhhc-----chhhHHHHHHHHhcccccCeEEEc
Q 014247 189 YMLL-----YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 189 ~~l~-----~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.... .......+++++.++|+|||.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 2111 112457889999999999999875
No 63
>PRK04266 fibrillarin; Provisional
Probab=99.44 E-value=1.8e-12 Score=119.45 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=95.7
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----cCCCcee
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----EIDEEVD 180 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----~~~~~~D 180 (428)
.+...++.+|||+|||+|.++..+++. +..+|+|+|++ .|++.+.++++.. .++.++.+|+.+. .+.++||
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCC
Confidence 466778999999999999999999987 33589999999 8998877776543 3589999998752 2246799
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCC
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFE 260 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 260 (428)
+|+++. . .......+++++.++|||||.+++... .-++... ..... .......+++++||+
T Consensus 144 ~i~~d~---~--~p~~~~~~L~~~~r~LKpGG~lvI~v~---~~~~d~~---~~~~~--------~~~~~~~~l~~aGF~ 204 (226)
T PRK04266 144 VIYQDV---A--QPNQAEIAIDNAEFFLKDGGYLLLAIK---ARSIDVT---KDPKE--------IFKEEIRKLEEGGFE 204 (226)
T ss_pred EEEECC---C--ChhHHHHHHHHHHHhcCCCcEEEEEEe---cccccCc---CCHHH--------HHHHHHHHHHHcCCe
Confidence 999753 1 111234568999999999999987411 1011000 00000 012345788899999
Q ss_pred CceEEeec
Q 014247 261 EPSVETIT 268 (428)
Q Consensus 261 ~~~~~~~~ 268 (428)
......+.
T Consensus 205 ~i~~~~l~ 212 (226)
T PRK04266 205 ILEVVDLE 212 (226)
T ss_pred EEEEEcCC
Confidence 87665543
No 64
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=118.88 Aligned_cols=109 Identities=25% Similarity=0.313 Sum_probs=86.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.....+.+.+...++.+|||||||+|..+..+++. + ..+|+++|++ ++++.|++++..+++.++++++.+|+.+...
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 34455566666678899999999999999988875 2 3589999999 9999999999998887789999999876433
Q ss_pred -CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 -DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 -~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+||+|++.. .+. .+..++.+.|+|||++++
T Consensus 139 ~~~~fD~Ii~~~---~~~------~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 139 KHAPFDAIIVTA---AAS------TIPSALVRQLKDGGVLVI 171 (205)
T ss_pred cCCCccEEEEcc---Ccc------hhhHHHHHhcCcCcEEEE
Confidence 37899999864 222 222466788999999975
No 65
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.43 E-value=2.6e-12 Score=119.33 Aligned_cols=146 Identities=19% Similarity=0.229 Sum_probs=100.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++....+..+++.+..+|+... .++||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~--- 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLD--- 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcc---
Confidence 5678999999999999999999876 69999999 99999999988877766799999995443 37899999854
Q ss_pred hhcc--hhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh------ccCCCCcchhHHHHHhcCCCC
Q 014247 190 MLLY--ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR------NVYGIDMSAMMPLAKQCAFEE 261 (428)
Q Consensus 190 ~l~~--~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~Gf~~ 261 (428)
.+++ ......+++.+.+++++++.+........ ..........|. ....++...+.+++.++||+.
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPL------LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHH------HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 3333 34577888888887755554432211100 000000111111 123345678889999999998
Q ss_pred ceEEeec
Q 014247 262 PSVETIT 268 (428)
Q Consensus 262 ~~~~~~~ 268 (428)
..+..+.
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 7766543
No 66
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.42 E-value=2.2e-12 Score=127.00 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=88.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCC--CcEEEEEcccccccCCCc
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLT--DKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~l~~~~~ 178 (428)
.+.+.+....+.+|||+|||+|.++..+++.+ ..+|+++|.| .+++.|+++++.|+.. .+++++..|+.+...+.+
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~ 298 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR 298 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCC
Confidence 34555544445699999999999999999874 4599999999 9999999999888754 368999988765333468
Q ss_pred eeEEEEecchhhhc--chhhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLL--YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
||+|+|++..+... .......++..+.++|+|||.+++.
T Consensus 299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 99999987433221 1233578899999999999998863
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=99.41 E-value=6.2e-12 Score=112.88 Aligned_cols=129 Identities=26% Similarity=0.325 Sum_probs=96.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCc-EEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDK-VIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
.++++|||+|||+|.++..+++.+ .+|+|+|.+ .+++.+++++..+++.++ +.++++|+.+...+.+||+|+++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 577899999999999999999985 599999999 999999999988887654 88999987764444689999987521
Q ss_pred hh--------------hc----chhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchh
Q 014247 189 YM--------------LL----YESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAM 250 (428)
Q Consensus 189 ~~--------------l~----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (428)
.. +. ....+..+++++.++|+|||.+++.... ......+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~-----------------------~~~~~~l 157 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS-----------------------LTGEDEV 157 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-----------------------cCCHHHH
Confidence 10 00 1223567899999999999988753211 0123456
Q ss_pred HHHHHhcCCCCce
Q 014247 251 MPLAKQCAFEEPS 263 (428)
Q Consensus 251 ~~~l~~~Gf~~~~ 263 (428)
..++.++||....
T Consensus 158 ~~~~~~~g~~~~~ 170 (188)
T PRK14968 158 LEYLEKLGFEAEV 170 (188)
T ss_pred HHHHHHCCCeeee
Confidence 7788888987643
No 68
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.40 E-value=5.4e-14 Score=112.83 Aligned_cols=94 Identities=27% Similarity=0.335 Sum_probs=61.7
Q ss_pred EEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc---cCCCceeEEEEecchhhh
Q 014247 117 VDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV---EIDEEVDVIISEWMGYML 191 (428)
Q Consensus 117 LDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l---~~~~~~DlVvs~~~~~~l 191 (428)
||||||+|.++..+++. ...+++|+|+| .|++.|++++....... ...+..+..+. ...++||+|++.. ++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~---vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASN---VL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE----TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhh---hH
Confidence 79999999999998887 44499999999 99988888888765433 33444333332 2236999999865 66
Q ss_pred cchhhHHHHHHHHhcccccCeEE
Q 014247 192 LYESMLGSVITARDRWLKRGGLI 214 (428)
Q Consensus 192 ~~~~~~~~~l~~~~~~LkpgG~l 214 (428)
++..++..+++.+.++|+|||+|
T Consensus 77 ~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhHHHHHHHHHHHcCCCCCC
Confidence 67788999999999999999986
No 69
>PRK05785 hypothetical protein; Provisional
Probab=99.39 E-value=3.6e-12 Score=117.95 Aligned_cols=89 Identities=22% Similarity=0.217 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
++.+|||||||||.++..+++....+|+|+|+| +|++.|++. ..++++|+++++++ ++||+|++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~--- 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSF--- 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecC---
Confidence 478999999999999999998732489999999 999988753 23578899998875 8999999865
Q ss_pred hhcchhhHHHHHHHHhcccccCe
Q 014247 190 MLLYESMLGSVITARDRWLKRGG 212 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG 212 (428)
.+++..+++.+++++.|+|||.+
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCce
Confidence 67777889999999999999954
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.39 E-value=3.3e-12 Score=117.48 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=84.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI- 175 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~- 175 (428)
....+.+.+...++.+|||||||+|.++..+++... .+|+++|++ .+++.|++++..+++. +++++++|+.+...
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCcc
Confidence 344555666678899999999999999999998732 369999999 9999999999999884 59999999876433
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+||+|++.. .. ..+...+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~---~~------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTA---AG------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcC---Cc------ccccHHHHHhcCcCcEEEEE
Confidence 36899999754 11 22334567889999998853
No 71
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.39 E-value=9.7e-12 Score=115.86 Aligned_cols=138 Identities=25% Similarity=0.332 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~ 187 (428)
..+.+|||+|||+|.++..+++.+ ..+|+++|++ .++..+++... .++.++.+|+.+.+++ ++||+|++..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~- 106 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNL- 106 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhh-
Confidence 345799999999999999999875 3478999999 88888876543 2588999999988754 7899999866
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh--ccCCCCcchhHHHHHhcCCCCceEE
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR--NVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
.+++..++..++..+.++|+|||.+++...... ...+....+. .....+...+..++.++ |....+.
T Consensus 107 --~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 107 --ALQWCDDLSQALSELARVLKPGGLLAFSTFGPG--------TLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc--------CHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 666777899999999999999999987543211 1111111122 12234567788888887 8776554
No 72
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.39 E-value=4.3e-12 Score=124.25 Aligned_cols=117 Identities=24% Similarity=0.275 Sum_probs=94.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
..+...+.......++.+|||+|||+|.++..++..+. +|+|+|++ .|+..|+++++..++.+ +.++++|+.+++..
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~ 245 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS 245 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc
Confidence 34555666665667889999999999999998888766 89999999 99999999999998876 89999999998764
Q ss_pred -CceeEEEEecchhh---hc---chhhHHHHHHHHhcccccCeEEEc
Q 014247 177 -EEVDVIISEWMGYM---LL---YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 -~~~DlVvs~~~~~~---l~---~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++||+|++++.... .. .......+++.+.++|+|||++++
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 78999999853111 11 112357899999999999999875
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=4.6e-12 Score=116.16 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=84.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.....+.+.+...++.+|||||||+|.++..+++. +. .+|+++|++ ++++.|+++++..++. +++++++|......
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~ 141 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC
Confidence 34445556666788999999999999999998886 32 499999999 9999999999988875 59999999876443
Q ss_pred -CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 -DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 -~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+||+|++.. ... .+...+.+.|||||++++
T Consensus 142 ~~~~fD~I~~~~---~~~------~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 142 ENAPYDRIYVTA---AGP------DIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred cCCCcCEEEECC---Ccc------cchHHHHHhhCCCcEEEE
Confidence 37899999854 221 223456678999999875
No 74
>PRK14967 putative methyltransferase; Provisional
Probab=99.38 E-value=5.8e-12 Score=116.54 Aligned_cols=106 Identities=27% Similarity=0.274 Sum_probs=84.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
...++.+|||+|||+|.++..+++.++.+|+++|++ .++..+++++..+++ +++++++|+.+....++||+|+++..
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~npP 110 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPFDVVVSNPP 110 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCeeEEEECCC
Confidence 346778999999999999999999877799999999 999999999888776 48899999876533478999999852
Q ss_pred hhhhc-------------------chhhHHHHHHHHhcccccCeEEEcc
Q 014247 188 GYMLL-------------------YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~-------------------~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+... ....+..+++++.++|||||++++.
T Consensus 111 -y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 111 -YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred -CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111 0112567888899999999999853
No 75
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.38 E-value=3.4e-12 Score=116.15 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc-cccc--C-CCceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV-EDVE--I-DEEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~l~--~-~~~~DlVvs~ 185 (428)
++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..+++. ++.++++|+ ..++ + +++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5689999999999999999886 34589999999 9999999999888874 599999999 6665 4 4789999985
Q ss_pred cchhhh---cch--hhHHHHHHHHhcccccCeEEEccC
Q 014247 186 WMGYML---LYE--SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 186 ~~~~~l---~~~--~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...... .+. .....+++++.++|+|||.+++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 421110 000 124778999999999999998643
No 76
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.37 E-value=1.2e-11 Score=118.32 Aligned_cols=107 Identities=22% Similarity=0.281 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
.++.+|||+|||+|.++..+++.. ..+|+|+|+| .+++.|++++..+++.++++++++|+.+....++||+|++++.-
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 345799999999999999999863 3489999999 99999999999999887899999998653223589999997521
Q ss_pred h----------hhcch------------hhHHHHHHHHhcccccCeEEEcc
Q 014247 189 Y----------MLLYE------------SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~----------~l~~~------------~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. .+.++ .....++..+.++|+|||++++.
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 01111 12467788899999999999864
No 77
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.36 E-value=8.8e-13 Score=113.39 Aligned_cols=136 Identities=29% Similarity=0.411 Sum_probs=115.1
Q ss_pred hhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcE
Q 014247 85 GIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKV 163 (428)
Q Consensus 85 ~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v 163 (428)
.||.+++.|..|...|..+|.+... ..+.|+|+|+|.+++.+|++ +++|++||.+ .....|.+++.-+|+. ++
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~ 82 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NW 82 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ce
Confidence 4788899999999999999988653 78999999999999999998 8899999999 7888898888777775 49
Q ss_pred EEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC
Q 014247 164 IVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH 228 (428)
Q Consensus 164 ~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 228 (428)
+++.+|+.+..+ +..|+|+|+.+...+..+. .-.++.++..+|+.++.++|.....-+.|+..
T Consensus 83 evv~gDA~~y~f-e~ADvvicEmlDTaLi~E~-qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~ 145 (252)
T COG4076 83 EVVVGDARDYDF-ENADVVICEMLDTALIEEK-QVPVINAVLEFLRYDPTIIPQEVRIGANPVRR 145 (252)
T ss_pred EEEecccccccc-cccceeHHHHhhHHhhccc-ccHHHHHHHHHhhcCCccccHHHhhccCcccc
Confidence 999999999888 7899999998887777666 45567777789999999999876555555543
No 78
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.36 E-value=1.1e-12 Score=115.57 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=93.7
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeE
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDV 181 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~Dl 181 (428)
+...+...+..+|.|+|||+|..+..++++ +...|+|+|.| +|++.|+++. .+++|..+|+.++..+.+.|+
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~dl 95 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTDL 95 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccch
Confidence 344556677789999999999999999998 55599999999 9999987663 248999999999998899999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
|+++. .+.|..+-.+++..+...|.|||.+....+..
T Consensus 96 lfaNA---vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 96 LFANA---VLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhh---hhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 99988 78888889999999999999999998765543
No 79
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.36 E-value=1.2e-11 Score=119.39 Aligned_cols=143 Identities=21% Similarity=0.203 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC----CCcEEEEEcccccccCCCceeEEEEe
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL----TDKVIVLHGRVEDVEIDEEVDVIISE 185 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~l~~~~~~DlVvs~ 185 (428)
.++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|++++...+. ..++.|..+|+.++ .++||+|+|.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 3678999999999999999999876 89999999 999999998876421 23578999998765 4789999985
Q ss_pred cchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhc------cCCCCcchhHHHHHhc
Q 014247 186 WMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRN------VYGIDMSAMMPLAKQC 257 (428)
Q Consensus 186 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~ 257 (428)
. .+.|.. ....+++.+.+ +.+||.++-..+.... ...+......|.. .|..+.+++..+++++
T Consensus 220 ~---vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~-----~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~A 290 (315)
T PLN02585 220 D---VLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLY-----YDILKRIGELFPGPSKATRAYLHAEADVERALKKA 290 (315)
T ss_pred C---EEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchH-----HHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHC
Confidence 4 333332 24456666664 4666665532221100 0001111111211 2334678899999999
Q ss_pred CCCCceEE
Q 014247 258 AFEEPSVE 265 (428)
Q Consensus 258 Gf~~~~~~ 265 (428)
||+....+
T Consensus 291 Gf~v~~~~ 298 (315)
T PLN02585 291 GWKVARRE 298 (315)
T ss_pred CCEEEEEE
Confidence 99865544
No 80
>PRK06922 hypothetical protein; Provisional
Probab=99.35 E-value=9.2e-12 Score=128.15 Aligned_cols=107 Identities=23% Similarity=0.384 Sum_probs=84.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEEE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVIIS 184 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVvs 184 (428)
..++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++....+ .++.++++|+.+++ + +++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEE
Confidence 356889999999999998888875 34599999999 99999988766544 35889999998876 3 378999998
Q ss_pred ecchhhhc----------chhhHHHHHHHHhcccccCeEEEccC
Q 014247 185 EWMGYMLL----------YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 185 ~~~~~~l~----------~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.+.+.+. ...++..+++++.++|||||.+++..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 76332211 12467899999999999999999854
No 81
>PLN03075 nicotianamine synthase; Provisional
Probab=99.35 E-value=1.3e-11 Score=116.93 Aligned_cols=105 Identities=21% Similarity=0.174 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCcHH-HHHHH-Hc-CCCeEEEEeCh-HHHHHHHHHHHH-CCCCCcEEEEEcccccccC-CCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGIL-SIFCA-QA-GAKRVYAVDAS-DIAVQANEVVKA-NNLTDKVIVLHGRVEDVEI-DEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~l-s~~la-~~-g~~~V~giD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~l~~-~~~~DlVvs 184 (428)
.++++|||||||.|.+ +..++ ++ ...+++++|.+ ++++.|++.+.. .++.++++|..+|+.++.. .++||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3778999999998754 33333 33 34489999999 999999999964 7888899999999988643 378999998
Q ss_pred ecchhhhcc-hhhHHHHHHHHhcccccCeEEEccC
Q 014247 185 EWMGYMLLY-ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 185 ~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.. .+.+ ..+...+++.+.+.|+|||.+++..
T Consensus 202 ~A---Li~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 AA---LVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ec---ccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 63 2222 2568999999999999999999765
No 82
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.33 E-value=5.9e-12 Score=110.21 Aligned_cols=99 Identities=21% Similarity=0.267 Sum_probs=83.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEE-EEEccccccc--CCCceeEEEEecchh
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVI-VLHGRVEDVE--IDEEVDVIISEWMGY 189 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~l~--~~~~~DlVvs~~~~~ 189 (428)
..||+||||||..-.+.--....+|+++|++ .|-+.|.+.++++...+ ++ |+.++.++++ .++++|+||+.+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~Tl--- 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCTL--- 153 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCcccccCCeeeEEEEE---
Confidence 4689999999987555543334499999999 99999999988885554 55 9999999998 459999999977
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++....++.+.|+++.++|+|||++++
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 777788899999999999999999875
No 83
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.31 E-value=3.3e-11 Score=105.26 Aligned_cols=113 Identities=23% Similarity=0.274 Sum_probs=93.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
..+......+...++.+++|||||||.++..++..+ ..+|++||.+ +.++..++++++.+. ++++++.+++.+.-..
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcC
Confidence 445556667788999999999999999999999664 4599999999 999999999999995 4599999998875333
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.++|.|+... . ..++.+++.+...|+|||+++....
T Consensus 100 ~~~~daiFIGG------g-~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 100 LPSPDAIFIGG------G-GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCCCEEEECC------C-CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 3799999643 2 4588999999999999999996543
No 84
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.31 E-value=3.7e-11 Score=118.57 Aligned_cols=124 Identities=23% Similarity=0.238 Sum_probs=92.2
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEE
Q 014247 89 EMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVL 166 (428)
Q Consensus 89 ~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~ 166 (428)
..+-.+..++.+.+.+...+ .++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.++. +++++
T Consensus 230 ~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi 305 (423)
T PRK14966 230 NVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFA 305 (423)
T ss_pred CccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEE
Confidence 34445566677777776654 35679999999999999998875 45589999999 999999999988765 69999
Q ss_pred EcccccccC--CCceeEEEEecchhh------------------hc----chhhHHHHHHHHhcccccCeEEEc
Q 014247 167 HGRVEDVEI--DEEVDVIISEWMGYM------------------LL----YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 167 ~~d~~~l~~--~~~~DlVvs~~~~~~------------------l~----~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++|+.+... .++||+|+|++.-.. +. .......+++.+.+.|+|||.+++
T Consensus 306 ~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 306 HGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999865432 368999999873100 00 011245677777889999999875
No 85
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.1e-11 Score=111.06 Aligned_cols=109 Identities=26% Similarity=0.353 Sum_probs=96.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
..|...+...+|.+|||.|.|+|.++..+|++ | ..+|+..|+- +.++.|+++++..++.+++++..+|+.+...+..
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 45666778899999999999999999999986 3 4699999999 9999999999999999999999999999877789
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
||+|+... ++++.++..+...|+|||.+++-.
T Consensus 164 vDav~LDm--------p~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 164 VDAVFLDL--------PDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred cCEEEEcC--------CChHHHHHHHHHHhCCCcEEEEEc
Confidence 99999754 569999999999999999988643
No 86
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.31 E-value=5.8e-11 Score=111.73 Aligned_cols=142 Identities=23% Similarity=0.231 Sum_probs=101.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
...+.+.+...+. ..+.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|++++..+++. ++.++++|+.+..
T Consensus 73 ~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~ 150 (251)
T TIGR03534 73 TEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPL 150 (251)
T ss_pred hHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccC
Confidence 3444445555443 34569999999999999999986 34499999999 9999999999988886 5999999987643
Q ss_pred CCCceeEEEEecchhhh-----------cc------------hhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc
Q 014247 175 IDEEVDVIISEWMGYML-----------LY------------ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR 231 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l-----------~~------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~ 231 (428)
..++||+|++++..... .+ ......+++.+.++|+|||.+++...
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------ 218 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------ 218 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC------------
Confidence 34789999997531110 00 11234678899999999999886321
Q ss_pred hhhhhhhhhccCCCCcchhHHHHHhcCCCCceE
Q 014247 232 YSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
| .....+.++++++||..+.+
T Consensus 219 -------~-----~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 219 -------Y-----DQGEAVRALFEAAGFADVET 239 (251)
T ss_pred -------c-----cHHHHHHHHHHhCCCCceEE
Confidence 0 12345777788899976543
No 87
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.30 E-value=9.1e-12 Score=106.87 Aligned_cols=107 Identities=18% Similarity=0.288 Sum_probs=85.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCe-EEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecc-hh
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKR-VYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWM-GY 189 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~-V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~-~~ 189 (428)
.+|||+|||+|.+...|++.|+.. .+|+|.| ..++.|+.+++++++.+.|+|.+.|+.+-.. +++||+|+-... ..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 399999999999999999998654 9999999 9999999999999999999999999988433 478888876331 10
Q ss_pred -hhc---chhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 190 -MLL---YESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 190 -~l~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
.|. ....+...+..+.++|+|||++++..++
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 111 1122456678889999999999987654
No 88
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=3e-11 Score=116.70 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=83.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh-
Q 014247 113 GKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY- 189 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~- 189 (428)
..+|||+|||+|.++..+++.. ..+|+|+|+| .+++.|+++++.+++.++++++++|+.+...+++||+|++++.-.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 3689999999999999999863 4589999999 999999999999998878999999986533236899999975210
Q ss_pred ---------hhcch------------hhHHHHHHHHhcccccCeEEEcc
Q 014247 190 ---------MLLYE------------SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 190 ---------~l~~~------------~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+.++ .....+++.+.++|+|||.+++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 01111 22467889999999999999864
No 89
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.30 E-value=4.6e-11 Score=108.25 Aligned_cols=112 Identities=18% Similarity=0.285 Sum_probs=87.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E- 174 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~- 174 (428)
.....+...+...++.+|||+|||+|.++..+++. +..+|+++|++ .+++.++++++.+++. +++++.+|+.+. +
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhh
Confidence 34445566666678899999999999999999875 34599999999 9999999999888875 599999998652 2
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
....+|.|+... ...+..+++.+.++|+|||.+++..
T Consensus 106 ~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 106 LAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 124567776532 1246788999999999999998653
No 90
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.29 E-value=2.9e-11 Score=118.34 Aligned_cols=111 Identities=25% Similarity=0.240 Sum_probs=85.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
.+...+......+|||+|||+|.++..+++.+ ..+|+++|++ .+++.|+++++.+++. .+++.+|+.+. .+++||
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fD 263 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFD 263 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCcc
Confidence 33444433345589999999999999999874 3489999999 9999999999999875 46777786553 357899
Q ss_pred EEEEecchhhhc--chhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLL--YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|++..+... .......+++.+.+.|+|||.+++
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 999987432211 124478899999999999999875
No 91
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.29 E-value=2.7e-11 Score=110.80 Aligned_cols=112 Identities=20% Similarity=0.114 Sum_probs=82.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC--------------CCcE
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL--------------TDKV 163 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~--------------~~~v 163 (428)
.+.+.+... ...++.+|||+|||.|..+..+|++|. +|+|+|+| ..++.+.+. +++ ..+|
T Consensus 22 ~l~~~~~~l-~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v 96 (213)
T TIGR03840 22 LLVKHWPAL-GLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNI 96 (213)
T ss_pred HHHHHHHhh-CCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCce
Confidence 444444332 224667999999999999999999999 89999999 777765332 221 2358
Q ss_pred EEEEcccccccCC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 164 IVLHGRVEDVEID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 164 ~~~~~d~~~l~~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+++++|+.+++.. ++||.|+.......+ .......+++.+.++|+|||++++
T Consensus 97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 97 EIFCGDFFALTAADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred EEEEccCCCCCcccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999887642 679999975422222 345578899999999999997664
No 92
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.29 E-value=9.1e-12 Score=117.88 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCcH----HHHHHHHcC------CCeEEEEeCh-HHHHHHHHHHHH----C------------------
Q 014247 111 IEGKVVVDVGCGTGI----LSIFCAQAG------AKRVYAVDAS-DIAVQANEVVKA----N------------------ 157 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~----ls~~la~~g------~~~V~giD~s-~~~~~a~~~~~~----~------------------ 157 (428)
.++.+|||+|||+|. +++.+++.+ ..+|+|+|+| .|++.|++.+-. .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 355799999999996 566666642 1389999999 999999874310 0
Q ss_pred ----CCCCcEEEEEcccccccC-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 158 ----NLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 158 ----~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.+.++|+|.+.|+.+.+. .++||+|+|..+...+ .......+++++.+.|+|||.+++...
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 122468999999998766 4899999997632222 224567899999999999999997654
No 93
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.9e-11 Score=113.39 Aligned_cols=114 Identities=23% Similarity=0.278 Sum_probs=88.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
.+.+.+.+....+.+|||+|||.|.++..+++.. ..+++-+|.| ..++.|++++..|++++. .++..|..+-. .++
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~~k 224 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-EGK 224 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-ccc
Confidence 3456666665666699999999999999999984 5699999999 899999999999999764 67777765432 259
Q ss_pred eeEEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~ 216 (428)
||+|+|++..+.-.... .-++++....+.|++||.|.+
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 99999998543222211 145889999999999998764
No 94
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.29 E-value=1.7e-11 Score=110.91 Aligned_cols=106 Identities=18% Similarity=0.263 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc---CC-CceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---ID-EEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~-~~~DlVvs~ 185 (428)
...+|||||||+|.++..+++. ...+|+|+|++ .+++.|++++...++. +++++++|+.++. ++ +.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999987 34589999999 9999999999888886 6999999998753 23 589999986
Q ss_pred cchhhhc--c---hhhHHHHHHHHhcccccCeEEEccC
Q 014247 186 WMGYMLL--Y---ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 186 ~~~~~l~--~---~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
....... + ....+.+++.+.++|||||.+++.+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4211100 0 0112678999999999999998643
No 95
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.29 E-value=3.6e-11 Score=115.32 Aligned_cols=122 Identities=23% Similarity=0.299 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhcc-CCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 96 RTETYRAAIMQNQ-SFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 96 r~~~~~~~i~~~~-~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
.++.+.+.+...+ ...+..+|||+|||+|.++..++... ..+|+|+|+| .++..|++++..+++.++++++++|+.+
T Consensus 97 ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 97 ETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred ccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence 3445555444332 22233699999999999999999873 2489999999 9999999999999987779999999876
Q ss_pred ccCCCceeEEEEecch----------hhhcch------------hhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEIDEEVDVIISEWMG----------YMLLYE------------SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~~~~~DlVvs~~~~----------~~l~~~------------~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.....+||+|++++.- ....++ .....++..+.++|+|||.+++.
T Consensus 177 ~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 177 PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 3222489999997520 011111 24677889999999999999864
No 96
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.29 E-value=3.5e-12 Score=113.32 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=115.0
Q ss_pred chhhHHHhhhccchhhhhhccChhh---HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHH
Q 014247 72 DFDVAYFHSYAHVGIHEEMIKDRVR---TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIA 147 (428)
Q Consensus 72 ~~~~~~f~~y~~~~~~~~~~~d~~r---~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~ 147 (428)
-+-...|+.|++. .+.++-++.. ...+.+.|.+ ....+-.++||+|||||..+..+-.. +++++|+|+| +|+
T Consensus 85 aYVe~LFD~~Ae~--Fd~~LVdkL~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl 160 (287)
T COG4976 85 AYVETLFDQYAER--FDHILVDKLGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML 160 (287)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHH
Confidence 3455778888864 3334433322 2334444443 33344579999999999999988776 7799999999 999
Q ss_pred HHHHHHHHHCCCCCcEEEEEcccccc---cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEe
Q 014247 148 VQANEVVKANNLTDKVIVLHGRVEDV---EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMA 224 (428)
Q Consensus 148 ~~a~~~~~~~~~~~~v~~~~~d~~~l---~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 224 (428)
+.|.++ ++-+ ++.++++..+ ..+++||+|++.- ++.+...++.++..+..+|+|||.+.++.-+.-..
T Consensus 161 ~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaD---Vl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 161 AKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAAD---VLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred HHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhhhh---HHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 888664 3322 3344444432 2248999999844 77788889999999999999999999875443211
Q ss_pred ecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEee
Q 014247 225 PVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
. .-.... ...|.-..+.+...+...||+.+.++..
T Consensus 232 ~---~f~l~p-----s~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 232 G---GFVLGP-----SQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred C---Ceecch-----hhhhccchHHHHHHHHhcCceEEEeecc
Confidence 0 000000 0112334556788889999998776644
No 97
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.1e-11 Score=106.99 Aligned_cols=106 Identities=23% Similarity=0.253 Sum_probs=85.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDE 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~ 177 (428)
....+.+.+...++.+|||||||+|..+..+|+. +.+|+++|.. ++++.|+++++..|+.+ |.++++|... ++...
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCC
Confidence 3445666777899999999999999999999998 4499999999 99999999999999987 9999999765 45458
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+||.|+... .... .++. +.+.|++||++++
T Consensus 138 PyD~I~Vta---aa~~--vP~~----Ll~QL~~gGrlv~ 167 (209)
T COG2518 138 PYDRIIVTA---AAPE--VPEA----LLDQLKPGGRLVI 167 (209)
T ss_pred CcCEEEEee---ccCC--CCHH----HHHhcccCCEEEE
Confidence 999999854 2221 1333 3456999999985
No 98
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.29 E-value=4.6e-11 Score=109.67 Aligned_cols=107 Identities=22% Similarity=0.258 Sum_probs=83.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DE 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~ 177 (428)
....+...+...++.+|||+|||+|.++..+++.+ .+|+++|.+ .++..|++++...++.+ ++++.+|..+... .+
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCC
Confidence 34455556666788999999999999999888874 489999999 99999999999888865 9999999765322 37
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+||+|++.. .. ..+.+.+.+.|+|||++++.
T Consensus 144 ~fD~I~~~~---~~------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 144 PFDRILVTA---AA------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CcCEEEEcc---Cc------hhhhHHHHHhcCCCcEEEEE
Confidence 899999854 22 22234567899999998853
No 99
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.27 E-value=2.5e-11 Score=124.93 Aligned_cols=113 Identities=25% Similarity=0.389 Sum_probs=86.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--ccCC-C
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--VEID-E 177 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--l~~~-~ 177 (428)
..+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.+++. ++...+++++++|+.+ ++++ +
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCC
Confidence 445555555677899999999999999999984 599999999 998876543 2333469999999864 4444 7
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+||+|++..+.+.+. ...+..+++++.++|||||.+++...
T Consensus 103 ~fD~I~~~~~l~~l~-~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWLLMYLS-DKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhhHHhCC-HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 899999977333332 23378999999999999999987653
No 100
>PTZ00146 fibrillarin; Provisional
Probab=99.27 E-value=8.9e-11 Score=110.74 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=80.9
Q ss_pred HHHHHHHHhc---cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 98 ETYRAAIMQN---QSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 98 ~~~~~~i~~~---~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
..+..+|..- +...++.+|||+|||+|.++..+++. + ..+|+++|++ .+.+...+.+... .+|.++.+|+.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~ 191 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR 191 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence 4556666443 34678899999999999999999997 3 3589999999 7665554444322 35888999986
Q ss_pred ccc----CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 172 DVE----IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 172 ~l~----~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
... +.+.||+|++.. . .......++.++.++|||||.+++.
T Consensus 192 ~p~~y~~~~~~vDvV~~Dv---a--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADV---A--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ChhhhhcccCCCCEEEEeC---C--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 421 226899999875 1 1223556677889999999999873
No 101
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.27 E-value=5.5e-11 Score=122.40 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=96.2
Q ss_pred hhhhhccChhhHHHHHHHHHhccC------------------------CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEE
Q 014247 86 IHEEMIKDRVRTETYRAAIMQNQS------------------------FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYA 140 (428)
Q Consensus 86 ~~~~~~~d~~r~~~~~~~i~~~~~------------------------~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~g 140 (428)
.....+-.+..++.+.+.+...+. ..++.+|||+|||+|.++..+++. +..+|+|
T Consensus 88 V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~a 167 (506)
T PRK01544 88 VNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIA 167 (506)
T ss_pred eCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEE
Confidence 334455556667777776654321 113468999999999999988875 4459999
Q ss_pred EeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh-----------hhcch------------hh
Q 014247 141 VDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY-----------MLLYE------------SM 196 (428)
Q Consensus 141 iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~-----------~l~~~------------~~ 196 (428)
+|+| .+++.|++++..+++.+++.++++|+.+....++||+|+|++.-. ...++ ..
T Consensus 168 vDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~ 247 (506)
T PRK01544 168 TDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQA 247 (506)
T ss_pred EECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHH
Confidence 9999 999999999999998888999999976532246899999976210 01111 12
Q ss_pred HHHHHHHHhcccccCeEEEcc
Q 014247 197 LGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 197 ~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+++.+.++|+|||.+++.
T Consensus 248 ~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred HHHHHHHHHHhccCCCEEEEE
Confidence 456778888999999998864
No 102
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.27 E-value=2.8e-11 Score=129.50 Aligned_cols=108 Identities=22% Similarity=0.208 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEccccccc--CCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDVE--IDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l~--~~~~~DlVvs~~ 186 (428)
.++++|||+|||+|.+++.+++.|+++|+++|+| .+++.|++++..|++. ++++++++|+.++. ..++||+|++++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 3578999999999999999999988899999999 9999999999999996 67999999987642 246899999987
Q ss_pred chhh--------hcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 187 MGYM--------LLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~~--------l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+. .....+...++..+.++|+|||.++++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4211 1123356778888899999999998653
No 103
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.26 E-value=4.7e-11 Score=118.90 Aligned_cols=109 Identities=22% Similarity=0.211 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEccccccc-----CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDVE-----IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l~-----~~~~~DlVv 183 (428)
.++++|||+|||+|.+++.++..|+.+|+++|+| .+++.|++++..|++. ++++++++|+.++. ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4678999999999999998887788899999999 9999999999999986 47999999987752 135899999
Q ss_pred Eecchhhhcc------hhhHHHHHHHHhcccccCeEEEccCC
Q 014247 184 SEWMGYMLLY------ESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 184 s~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+++..+.-.. ......++....++|+|||.++.+++
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9874321111 12355666778899999999997554
No 104
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.26 E-value=4.9e-11 Score=110.85 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-------CCCce
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-------IDEEV 179 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-------~~~~~ 179 (428)
..++++|||+|||+|..++.+++. +..+|+++|.+ ++++.|+++++.+++.++++++.+|+.+.- ..++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 356789999999999988888775 35699999999 999999999999999999999999987641 13689
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
|+|+.+. .......++..+.++|+|||++++...
T Consensus 146 D~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9999754 123456778888999999999987654
No 105
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.25 E-value=9e-11 Score=113.41 Aligned_cols=118 Identities=16% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-c
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-V 173 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l 173 (428)
+.+.+.|...+ .++.+|||+|||+|..+..++++. ..+|+++|+| +|++.|++++......-++.++++|+.+ +
T Consensus 51 ~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 51 ERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred HHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 34444555444 466899999999999999998874 3489999999 9999998887654323357889999986 3
Q ss_pred cCCCce---eEEEEecchhhhc--chhhHHHHHHHHhcccccCeEEEccC
Q 014247 174 EIDEEV---DVIISEWMGYMLL--YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 174 ~~~~~~---DlVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+....+ +.+++. ++..+. ...+...+++++.+.|+|||.+++..
T Consensus 129 ~~~~~~~~~~~~~~~-~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 129 ALPPEPAAGRRLGFF-PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred hhhcccccCCeEEEE-ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 443333 333321 222222 34557789999999999999998754
No 106
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.24 E-value=9.9e-11 Score=107.47 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC--------------CCcEEEEEcccccccC
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL--------------TDKVIVLHGRVEDVEI 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~l~~ 175 (428)
.++.+|||+|||.|..+..+|+.|. +|+|||+| ..++.+.+ ++++ ..+|++.++|+.++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4668999999999999999999998 89999999 77776532 2322 2468999999998754
Q ss_pred C--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 176 D--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 176 ~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
. ..||+|+...+...+ .......+++.+.++|+|||+++
T Consensus 112 ~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 112 ADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 3 689999986533333 34557899999999999999644
No 107
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.22 E-value=9.7e-11 Score=105.96 Aligned_cols=147 Identities=17% Similarity=0.230 Sum_probs=95.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-cc-C-CCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VE-I-DEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~-~-~~~~DlVvs~~ 186 (428)
.++.+|||||||+|.++..+++.+...++|+|++ +++..+++. +++++++|+.+ ++ . +++||+|++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 4678999999999999998887644478999999 888776531 36888889876 32 3 37899999865
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEe-e-cCCccc-hhh-hhhhhh---ccCCCCcchhHHHHHhcCC
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMA-P-VTHPDR-YSE-SIDFWR---NVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-~-~~~~~~-~~~-~~~~~~---~~~~~~~~~l~~~l~~~Gf 259 (428)
.+++..++..+++++.+.++++...++........ . ...... ... ....|. ....+..+.+.++++++||
T Consensus 84 ---~l~~~~d~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 84 ---TLQATRNPEEILDEMLRVGRHAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred ---HhHcCcCHHHHHHHHHHhCCeEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 66777788999999888776543333321111000 0 000000 000 000111 1234567889999999999
Q ss_pred CCceEEeec
Q 014247 260 EEPSVETIT 268 (428)
Q Consensus 260 ~~~~~~~~~ 268 (428)
+........
T Consensus 161 ~v~~~~~~~ 169 (194)
T TIGR02081 161 RILDRAAFD 169 (194)
T ss_pred EEEEEEEec
Confidence 987766554
No 108
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.22 E-value=1.1e-10 Score=106.17 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=73.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~ 187 (428)
.++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++. .++.++++|+.+ +. +++||+|++..+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 46779999999999999999886 45589999999 9999987753 136788899887 44 479999999763
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+.+ ...++..+++++.+++ ++.+++.
T Consensus 115 L~hl-~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 115 LIHI-NPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred hhhC-CHHHHHHHHHHHHhhc--CcEEEEE
Confidence 3222 2345788889998887 4455553
No 109
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.22 E-value=1.1e-10 Score=114.55 Aligned_cols=106 Identities=16% Similarity=0.266 Sum_probs=85.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVII 183 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVv 183 (428)
....+..+||||||+|.++..+|+. +...++|+|++ +++..|.+++..+++.+ +.++++|+..+. + ++++|.|+
T Consensus 119 ~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 119 SKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred cCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEE
Confidence 3355679999999999999999987 34589999999 99999999999999875 999999987642 2 38999999
Q ss_pred Eecchhhhcchh------hHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLLYES------MLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~~~~------~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.. -..|.. ..+.++.++.++|+|||.+.+.+
T Consensus 198 lnF---PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 198 VHF---PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred EeC---CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 854 222211 13689999999999999998754
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=1.8e-10 Score=110.01 Aligned_cols=123 Identities=25% Similarity=0.246 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc
Q 014247 93 DRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV 170 (428)
Q Consensus 93 d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 170 (428)
....++.+.+.+.......++.+|||+|||+|.++..+++.. ..+|+|+|++ .+++.|++++. .....++.++.+|+
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~ 167 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW 167 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence 344456667766655555677899999999999999999873 4589999999 99999999887 34445799999998
Q ss_pred ccccCCCceeEEEEecchhh-----------h------------cchhhHHHHHHHHhcccccCeEEEc
Q 014247 171 EDVEIDEEVDVIISEWMGYM-----------L------------LYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 171 ~~l~~~~~~DlVvs~~~~~~-----------l------------~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+....++||+|++++.... . ........+++.+.++|+|||.+++
T Consensus 168 ~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 168 FEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred cCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 65333478999999752100 0 0112346778888899999999986
No 111
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.21 E-value=2e-10 Score=103.73 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~~ 187 (428)
.++.+|||+|||+|.+++.++..++.+|+++|.+ ..++.++++++.+++. +++++++|+.+.. ..++||+|++++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 4678999999999999997666677899999999 9999999999998875 5999999987632 1257999999984
Q ss_pred hhhhcchhhHHHHHHHHh--cccccCeEEEccCC
Q 014247 188 GYMLLYESMLGSVITARD--RWLKRGGLILPSYA 219 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~--~~LkpgG~lv~~~~ 219 (428)
. .......+++.+. .+|+|+++++++..
T Consensus 131 y----~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 F----RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred C----CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 1 1222444555554 45899998887643
No 112
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=1.7e-10 Score=117.54 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=89.6
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEE
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
..+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..|+. +|+++++|+.++...++||+|
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~V 322 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAI 322 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEE
Confidence 3445578899999999999999888874 23489999999 9999999999999885 599999999887655789999
Q ss_pred EEecc----hhhhcc--------hh-------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 183 ISEWM----GYMLLY--------ES-------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 183 vs~~~----~~~l~~--------~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+++.. +.+-.+ .. ....+|..+.++|+|||+++.+++++
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 97532 111100 11 13468999999999999999877654
No 113
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.20 E-value=1.3e-10 Score=105.60 Aligned_cols=108 Identities=22% Similarity=0.310 Sum_probs=79.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E 174 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~ 174 (428)
.....+.+.+...+|.+|||||||+|.++..+++. |. .+|+++|.. .+++.|++++...+.. +|.++++|...- +
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc
Confidence 44556667777899999999999999999999987 43 369999999 9999999999998886 499999997653 3
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
...+||.|++.. ... ..+. .+.+.|++||+|+.
T Consensus 138 ~~apfD~I~v~~---a~~--~ip~----~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 138 EEAPFDRIIVTA---AVP--EIPE----ALLEQLKPGGRLVA 170 (209)
T ss_dssp GG-SEEEEEESS---BBS--S--H----HHHHTEEEEEEEEE
T ss_pred cCCCcCEEEEee---ccc--hHHH----HHHHhcCCCcEEEE
Confidence 337899999854 232 2123 34566999999984
No 114
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.5e-10 Score=99.36 Aligned_cols=92 Identities=32% Similarity=0.350 Sum_probs=75.2
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEe
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISE 185 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~ 185 (428)
......|++|+|+|||||.+++.++-.|+.+|+|+|++ ++++.+++++.+ +..++.|+.+|+.+.. .++|.++.|
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEEC
Confidence 44567899999999999999999999999999999999 999999999888 4557999999999876 779999998
Q ss_pred c-chhhhcchhhHHHHHHH
Q 014247 186 W-MGYMLLYESMLGSVITA 203 (428)
Q Consensus 186 ~-~~~~l~~~~~~~~~l~~ 203 (428)
+ +|....+ .|.+-+..+
T Consensus 116 PPFG~~~rh-aDr~Fl~~A 133 (198)
T COG2263 116 PPFGSQRRH-ADRPFLLKA 133 (198)
T ss_pred CCCcccccc-CCHHHHHHH
Confidence 7 4444333 444444433
No 115
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.19 E-value=1.6e-10 Score=107.19 Aligned_cols=108 Identities=26% Similarity=0.315 Sum_probs=85.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-- 175 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-- 175 (428)
...|...+...+|.+|||.|.|+|.++..+++. ...+|+..|+. +.++.|+++++..++.++|++.+.|+.+..+
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 345667778899999999999999999999986 35699999999 9999999999999999899999999965333
Q ss_pred --CCceeEEEEecchhhhcchhhHHHHHHHHhccc-ccCeEEEc
Q 014247 176 --DEEVDVIISEWMGYMLLYESMLGSVITARDRWL-KRGGLILP 216 (428)
Q Consensus 176 --~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lv~ 216 (428)
...+|.|+.++ ++++.++..+.+.| ++||+++.
T Consensus 109 ~~~~~~DavfLDl--------p~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 109 ELESDFDAVFLDL--------PDPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp T-TTSEEEEEEES--------SSGGGGHHHHHHHE-EEEEEEEE
T ss_pred cccCcccEEEEeC--------CCHHHHHHHHHHHHhcCCceEEE
Confidence 36799999764 34677788888999 89999885
No 116
>PRK06202 hypothetical protein; Provisional
Probab=99.18 E-value=1.5e-10 Score=107.76 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=76.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----CC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----GA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
+.+.+...+...++.+|||||||+|.++..+++. |. .+|+|+|++ .|++.|+++...+ ++.+...+...+
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l 123 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL 123 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc
Confidence 3444443344456789999999999998888753 32 389999999 9999998765433 356666666555
Q ss_pred cC-CCceeEEEEecchhhhcchhh--HHHHHHHHhcccccCeEE
Q 014247 174 EI-DEEVDVIISEWMGYMLLYESM--LGSVITARDRWLKRGGLI 214 (428)
Q Consensus 174 ~~-~~~~DlVvs~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l 214 (428)
+. +++||+|+++. .++|..+ +..+++++.++++ ++.+
T Consensus 124 ~~~~~~fD~V~~~~---~lhh~~d~~~~~~l~~~~r~~~-~~~~ 163 (232)
T PRK06202 124 VAEGERFDVVTSNH---FLHHLDDAEVVRLLADSAALAR-RLVL 163 (232)
T ss_pred cccCCCccEEEECC---eeecCChHHHHHHHHHHHHhcC-eeEE
Confidence 54 37999999976 4555443 5689999999998 4443
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=2.6e-10 Score=115.49 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=88.5
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---CCcee
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DEEVD 180 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~~~D 180 (428)
..+...++.+|||+|||+|..+..+++.+. .+|+++|++ .++..++++++.+++. ++++++|+.++.. .++||
T Consensus 238 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 238 TLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred HHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCC
Confidence 344567899999999999999999998743 599999999 9999999999998874 6899999987532 36799
Q ss_pred EEEEecchhhh------------cchh-------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 181 VIISEWMGYML------------LYES-------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 181 lVvs~~~~~~l------------~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+|+++...+.. .... ....++..+.++|||||.++.+++++
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99976532111 0111 13468999999999999999876654
No 118
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.17 E-value=2.7e-10 Score=108.01 Aligned_cols=114 Identities=15% Similarity=0.033 Sum_probs=88.0
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEE
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVI 182 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlV 182 (428)
.+...++.+|||+|||+|..+..+++. + ...|+++|++ .+++.++++++.+++.+ +.+++.|+..+... ++||+|
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhccCCCEE
Confidence 344578899999999999999998875 2 3489999999 99999999999998864 99999998876433 679999
Q ss_pred EEecchhhh---c---------chh-------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 183 ISEWMGYML---L---------YES-------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 183 vs~~~~~~l---~---------~~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+++...+.. . ... ....+|..+.++|||||+++.+++++
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 986532211 0 011 13458899999999999999766543
No 119
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=2.2e-10 Score=115.86 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=90.5
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCcee
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVD 180 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~D 180 (428)
..+...+|.+|||+|||+|..+..+++. +..+|+++|++ .+++.+++++++.++.+ ++++++|+.+++ ..++||
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCC
Confidence 3445678899999999999999998886 24599999999 99999999999998864 999999998765 247899
Q ss_pred EEEEecchhhhcc---h----------------hhHHHHHHHHhcccccCeEEEccCCee
Q 014247 181 VIISEWMGYMLLY---E----------------SMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 181 lVvs~~~~~~l~~---~----------------~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
.|+++...+.+.. . ....++|..+.++|||||.++.+++++
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9998653221111 1 123567889999999999999877653
No 120
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.17 E-value=1e-10 Score=111.55 Aligned_cols=101 Identities=18% Similarity=0.283 Sum_probs=75.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC----CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG----AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g----~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
..+.+.+.+. .+..+|||+|||+|.++..+++.. ...|+|+|+| .++..|+++. .++.+..+|+.+++
T Consensus 74 i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp 146 (272)
T PRK11088 74 VANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLP 146 (272)
T ss_pred HHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCC
Confidence 3344444432 355789999999999999888752 1379999999 9998887642 24889999999988
Q ss_pred CC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++ ++||+|++.. . +..++++.|+|||||.++..
T Consensus 147 ~~~~sfD~I~~~~---~-------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 147 FADQSLDAIIRIY---A-------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred CcCCceeEEEEec---C-------CCCHHHHHhhccCCCEEEEE
Confidence 75 7899999843 1 22357889999999999863
No 121
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.17 E-value=2.3e-10 Score=100.64 Aligned_cols=146 Identities=21% Similarity=0.263 Sum_probs=100.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-C-CCc
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-I-DEE 178 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~-~~~ 178 (428)
.|.+.+ .+|.+|||+|||.|.+...+.+....+.+|+|++ +.+..+.++ .+.++++|+.+- . + +++
T Consensus 6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQS 75 (193)
T ss_pred HHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCC
Confidence 344443 6889999999999999999988644489999999 766555443 378999998763 1 2 389
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee---e---------EeecCCccchhhhhhhhh---ccC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL---Y---------MAPVTHPDRYSESIDFWR---NVY 243 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~---~---------~~~~~~~~~~~~~~~~~~---~~~ 243 (428)
||.||.+. .+.....++.+|+++.|+ |...+++-++. . -+|++..-. .-|. +.+
T Consensus 76 FD~VIlsq---tLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lP-----y~WYdTPNih 144 (193)
T PF07021_consen 76 FDYVILSQ---TLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALP-----YEWYDTPNIH 144 (193)
T ss_pred ccEEehHh---HHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCC-----CcccCCCCcc
Confidence 99999654 777777899999988665 44555444332 1 123332111 1233 355
Q ss_pred CCCcchhHHHHHhcCCCCceEEeecC
Q 014247 244 GIDMSAMMPLAKQCAFEEPSVETITG 269 (428)
Q Consensus 244 ~~~~~~l~~~l~~~Gf~~~~~~~~~~ 269 (428)
.+.+.++..+.++.|+...+-..+..
T Consensus 145 ~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 145 LCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred cccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 66788999999999998766555544
No 122
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=2.4e-10 Score=116.44 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=90.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCC
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDE 177 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~ 177 (428)
.+...+...++.+|||+|||+|..+..+++. +..+|+++|++ .++..++++++.+++.+ ++++++|+.++. +++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhcc
Confidence 3334455577899999999999999999886 34599999999 99999999999999875 999999998763 237
Q ss_pred ceeEEEEecchhhhc------------chhh-------HHHHHHHHhcccccCeEEEccCCee
Q 014247 178 EVDVIISEWMGYMLL------------YESM-------LGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~------------~~~~-------~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+||+|+++...+... ...+ ...++..+.++|||||.++.+++++
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 899999875321110 0111 2467899999999999999766543
No 123
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=2.6e-10 Score=115.82 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=90.8
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc----C-C
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE----I-D 176 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~----~-~ 176 (428)
...+...+|.+|||+|||+|..+..+++. +..+|+++|++ .++..++++++..|+.+ |+++++|+.++. . .
T Consensus 245 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 245 APLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhccccccccc
Confidence 34455678899999999999999999886 23589999999 99999999999999875 999999998765 2 3
Q ss_pred CceeEEEEecchhh---hcchh----------------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 177 EEVDVIISEWMGYM---LLYES----------------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 177 ~~~DlVvs~~~~~~---l~~~~----------------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
++||.|+++...+. +...+ ....+|.++.++|||||+++.+++++
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 68999998653211 11111 14678999999999999999776654
No 124
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.17 E-value=3.9e-10 Score=109.08 Aligned_cols=107 Identities=23% Similarity=0.202 Sum_probs=81.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+...+.+.+...++.+|||||||+|.++..+++... .+|+++|.+ ++++.|+++++.++.. ++.++++|..+....
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc
Confidence 334455555667889999999999999999998632 369999999 9999999999988875 599999998765433
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+||+|++.. ... .....+.+.|+|||++++
T Consensus 147 ~~~fD~Ii~~~---g~~------~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 147 FAPYDVIFVTV---GVD------EVPETWFTQLKEGGRVIV 178 (322)
T ss_pred cCCccEEEECC---chH------HhHHHHHHhcCCCCEEEE
Confidence 6799999753 221 122345678999998875
No 125
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.15 E-value=3.1e-10 Score=114.98 Aligned_cols=120 Identities=16% Similarity=0.102 Sum_probs=90.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---CC
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DE 177 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~ 177 (428)
.+...+...++.+|||+|||+|..+..+++. +..+|+|+|++ .++..++++++..++...+.+..+|...... .+
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 3344455678899999999999999999986 44599999999 9999999999998886445567777765442 37
Q ss_pred ceeEEEEecchh--h-hcchh----------------hHHHHHHHHhcccccCeEEEccCCeee
Q 014247 178 EVDVIISEWMGY--M-LLYES----------------MLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 178 ~~DlVvs~~~~~--~-l~~~~----------------~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
+||+|+++...+ . +...+ ....+|..+.++|||||.++.+++++.
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 899999864211 1 11111 136789999999999999998776543
No 126
>PRK04457 spermidine synthase; Provisional
Probab=99.15 E-value=2.1e-10 Score=108.39 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~ 186 (428)
.++++|||||||+|.++..+++. +..+|+++|++ .+++.|++.+...+..++++++.+|+.+.- .+++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45689999999999999988876 44589999999 999999998765555568999999987642 236899999875
Q ss_pred chhh-hcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 187 MGYM-LLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 187 ~~~~-l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+... ........++++.+.+.|+|||++++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3211 111112478999999999999999864
No 127
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.7e-10 Score=107.55 Aligned_cols=124 Identities=25% Similarity=0.350 Sum_probs=90.0
Q ss_pred hccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE
Q 014247 90 MIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH 167 (428)
Q Consensus 90 ~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~ 167 (428)
.+-...-++.+.+.+......... +|||+|||||.++..+++... .+|+|+|+| ..++.|++++..+++ .++.++.
T Consensus 89 vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~ 166 (280)
T COG2890 89 VLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQ 166 (280)
T ss_pred ceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEe
Confidence 333445556666665433322222 899999999999999999854 499999999 999999999999998 5577777
Q ss_pred cccccccCCCceeEEEEecchhhhc-----------------------chhhHHHHHHHHhcccccCeEEEcc
Q 014247 168 GRVEDVEIDEEVDVIISEWMGYMLL-----------------------YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 168 ~d~~~l~~~~~~DlVvs~~~~~~l~-----------------------~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|..+- ..++||+||||+. |.-. +......++..+.+.|+|||.+++.
T Consensus 167 ~dlf~~-~~~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 167 SDLFEP-LRGKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred eecccc-cCCceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 775542 2359999999873 1100 1123577788889999999988864
No 128
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.14 E-value=5.3e-10 Score=105.06 Aligned_cols=118 Identities=23% Similarity=0.199 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 96 RTETYRAAIMQNQSF-IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 96 r~~~~~~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
.++.+.+.+...+.. ..+.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++++..++ ++++++|+.+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh
Confidence 345555555544321 23468999999999999998875 33489999999 99999999988765 4788899875
Q ss_pred ccC---CCceeEEEEecchhhh-----------cc------------hhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEI---DEEVDVIISEWMGYML-----------LY------------ESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~---~~~~DlVvs~~~~~~l-----------~~------------~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
... .++||+|++++...-. .+ ...+..++..+.++|+|||.+++.
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 321 3679999998731100 01 112457888888999999999864
No 129
>PHA03411 putative methyltransferase; Provisional
Probab=99.14 E-value=2.3e-10 Score=106.80 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
....+|||+|||+|.++..+++. +..+|+++|++ .+++.++++. .+++++++|+.++....+||+|++++..
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPF 136 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCc
Confidence 34569999999999999888775 34599999999 9998887753 2489999999987666789999998743
Q ss_pred hhhcchh-----------------hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhH
Q 014247 189 YMLLYES-----------------MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMM 251 (428)
Q Consensus 189 ~~l~~~~-----------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (428)
+.+.... .+..++.....+|+|+|.+++. ......|. ..++..++.
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~--------yss~~~y~---------~sl~~~~y~ 199 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA--------YSGRPYYD---------GTMKSNKYL 199 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE--------Eecccccc---------ccCCHHHHH
Confidence 2221110 0355667777778888865543 22222221 234567788
Q ss_pred HHHHhcCCCC
Q 014247 252 PLAKQCAFEE 261 (428)
Q Consensus 252 ~~l~~~Gf~~ 261 (428)
.++.+.||..
T Consensus 200 ~~l~~~g~~~ 209 (279)
T PHA03411 200 KWSKQTGLVT 209 (279)
T ss_pred HHHHhcCcEe
Confidence 8888888863
No 130
>PHA03412 putative methyltransferase; Provisional
Probab=99.14 E-value=1.9e-10 Score=105.02 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc----CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEec
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA----GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~----g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
.+.+|||+|||+|.++..+++. ...+|+++|++ .++..|+++.. ++.++++|+......++||+||+++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 4679999999999999998874 23489999999 99998887642 3789999998766667999999998
Q ss_pred chhhhc---------chhhHHHHHHHHhcccccCeEEEccCC
Q 014247 187 MGYMLL---------YESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 187 ~~~~l~---------~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
...-+. .......++..+.+++++|+.++|...
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 432111 112256688888888899998887654
No 131
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=9e-11 Score=105.48 Aligned_cols=148 Identities=22% Similarity=0.232 Sum_probs=101.4
Q ss_pred EEEEEcCCCcHHHHHHHHcCCC---eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-----CCCceeEEEEe
Q 014247 115 VVVDVGCGTGILSIFCAQAGAK---RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-----IDEEVDVIISE 185 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~---~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~~DlVvs~ 185 (428)
+||+||||.|.....+.+.... +|+++|.| ..++..+++...+. .++.....|+..-. .++++|+|++-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999998888876332 89999999 88877776654432 34555555654422 13899999986
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC---ccchhhhhhhhh---ccCCCCcchhHHHHHhcCC
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH---PDRYSESIDFWR---NVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~Gf 259 (428)
.+.+.+..+ ....++..+.++|||||.+++.+...|...... .....+....-. .+|.|+.+.+..++.++||
T Consensus 152 FvLSAi~pe-k~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 152 FVLSAIHPE-KMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EEEeccChH-HHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhccc
Confidence 544444433 478889999999999999999877665432111 111111111111 2588999999999999999
Q ss_pred CCceEE
Q 014247 260 EEPSVE 265 (428)
Q Consensus 260 ~~~~~~ 265 (428)
...+.+
T Consensus 231 ~~~~~~ 236 (264)
T KOG2361|consen 231 EEVQLE 236 (264)
T ss_pred chhccc
Confidence 876543
No 132
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.14 E-value=2.4e-10 Score=104.49 Aligned_cols=97 Identities=26% Similarity=0.339 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc--------C-CCc
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE--------I-DEE 178 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--------~-~~~ 178 (428)
..++.+|||||||+|.++..+++. + ..+|+|||+++|. ... +++++++|+.+.. + +++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIV-GVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCC-CcEEEecCCCChHHHHHHHHHhCCCC
Confidence 467889999999999999999887 3 2489999999741 222 4899999998853 2 378
Q ss_pred eeEEEEecchhhhcch--------hhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYE--------SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
||+|+|+...+..... .....+++.+.++|+|||.+++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999997522221110 11356899999999999999863
No 133
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.13 E-value=4.9e-10 Score=88.96 Aligned_cols=99 Identities=37% Similarity=0.480 Sum_probs=79.8
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--CCceeEEEEecchhhh
Q 014247 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--DEEVDVIISEWMGYML 191 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~DlVvs~~~~~~l 191 (428)
+|||+|||.|.++..+++....+++++|.+ .++..+++..... ...++.++..|+.+... .++||+|++.. .+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~---~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDP---PL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEcc---ce
Confidence 489999999999999988556699999999 8887777543333 33469999999988763 47899999876 44
Q ss_pred cc-hhhHHHHHHHHhcccccCeEEEcc
Q 014247 192 LY-ESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 192 ~~-~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+ ......+++.+.+.|+|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 44 667889999999999999999865
No 134
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.11 E-value=9.2e-10 Score=98.88 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-C--C-CceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-I--D-EEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~--~-~~~DlVvs 184 (428)
..+.+|||++||+|.+++.++.+|+++|+++|.+ ..+..++++++.+++.++++++++|+.+. . . . ..||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4678999999999999999999999999999999 99999999999999877899999998553 2 1 1 24788888
Q ss_pred ecchhhhcchhhHHHHHHHH--hcccccCeEEEccCC
Q 014247 185 EWMGYMLLYESMLGSVITAR--DRWLKRGGLILPSYA 219 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lv~~~~ 219 (428)
.+.. .. .....++..+ ..+|+++|.+++...
T Consensus 128 DPPy-~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPF-FN---GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCC-CC---CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 7632 11 1233444433 458999999887643
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.11 E-value=6.8e-10 Score=98.11 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=78.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Ccee
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVD 180 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~D 180 (428)
.+.+.+...++.+|||+|||+|.++..+++. ..+|+++|++ .+++.+++++.. .++++++++|+.+++.+ ..||
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCC
Confidence 4455555677889999999999999999998 4599999999 899999887743 24699999999998765 4599
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+++...+ . ....+..+++. ..+.++|.+++.
T Consensus 80 ~vi~n~Py~-~-~~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 80 KVVGNLPYN-I-STPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred EEEECCCcc-c-HHHHHHHHHhc--CCCcceEEEEEE
Confidence 999986321 1 12334444432 224577877754
No 136
>PRK00811 spermidine synthase; Provisional
Probab=99.10 E-value=8.9e-10 Score=105.40 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC--C--CCcEEEEEcccccccC--CCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN--L--TDKVIVLHGRVEDVEI--DEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~l~~--~~~~DlV 182 (428)
..+++||+||||+|.++..+++. +..+|++||++ .+++.|++.+...+ . ..+++++.+|+..... .++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999999887 67799999999 99999999876432 2 4579999999877432 4789999
Q ss_pred EEecchhhhcc-hhhHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYMLLY-ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+++........ .....++++.+.+.|+|||+++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 99752221111 1123678899999999999998643
No 137
>PLN02476 O-methyltransferase
Probab=99.10 E-value=8e-10 Score=104.15 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-----CCce
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-----DEEV 179 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-----~~~~ 179 (428)
..+.++|||||+++|..++.+|+. + ..+|+++|.+ +.++.|++++++.|+.++|+++.+|+.+.- + .++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 356789999999999999999985 2 3479999999 999999999999999999999999986631 1 2589
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
|+|+... .......++..+.++|+|||++++...
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999764 234577788888899999999997654
No 138
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.07 E-value=1.3e-09 Score=105.99 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=82.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-- 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-- 175 (428)
.+.+.+.+.+...++.+|||+|||+|.+++.+++.+ .+|+|+|.+ .+++.|+++++.+++ ++++|+++|+.++..
T Consensus 160 ~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~ 237 (315)
T PRK03522 160 QLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ 237 (315)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc
Confidence 334444444443467899999999999999999986 599999999 999999999999998 469999999987642
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++||+|++++.-. .....+++.+.+ ++|+++++++
T Consensus 238 ~~~~D~Vv~dPPr~-----G~~~~~~~~l~~-~~~~~ivyvs 273 (315)
T PRK03522 238 GEVPDLVLVNPPRR-----GIGKELCDYLSQ-MAPRFILYSS 273 (315)
T ss_pred CCCCeEEEECCCCC-----CccHHHHHHHHH-cCCCeEEEEE
Confidence 25799999987421 112333333333 6777777654
No 139
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.07 E-value=5.8e-10 Score=101.11 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-------CCcee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-------DEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-------~~~~D 180 (428)
.+.++||+|||++|..++.+|+. + ..+|+.+|.+ +.++.|++.++..|+.++|+++.+|+.+.-. .++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 56789999999999999999986 2 3499999999 9999999999999999999999999876311 25899
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+|+... ........+..+.++|+|||.++....-+
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 999764 23446667777889999999999876543
No 140
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.06 E-value=1.8e-09 Score=110.02 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE- 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~- 174 (428)
++.+.+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+| .+++.|++++..+++.+ ++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhh
Confidence 45566666666666778999999999999999999985 599999999 99999999999998864 999999987532
Q ss_pred ---C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ---I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ---~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. .++||+|++++.-. . ...+++.+.+ ++|+++++++
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~-----g-~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRA-----G-AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhhhcCCCCEEEECcCCc-----C-hHHHHHHHHh-cCCCeEEEEE
Confidence 2 25799999986321 1 2344555555 6888888765
No 141
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.06 E-value=1.4e-10 Score=104.34 Aligned_cols=96 Identities=24% Similarity=0.235 Sum_probs=71.3
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecchhhhc
Q 014247 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLL 192 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~~~~l~ 192 (428)
.++|+|||+|..+..+|.. +++|+|+|+| .|+..|++.....-.....++...++.++.- ++++|+|+|.. +++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq---a~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ---AVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh---hHH
Confidence 8999999999888888887 8899999999 9999887754322111123344444444432 48999999865 665
Q ss_pred chhhHHHHHHHHhcccccCe-EEE
Q 014247 193 YESMLGSVITARDRWLKRGG-LIL 215 (428)
Q Consensus 193 ~~~~~~~~l~~~~~~LkpgG-~lv 215 (428)
|.. ++.+++.++|+||+.| .+.
T Consensus 112 WFd-le~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 112 WFD-LERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hhc-hHHHHHHHHHHcCCCCCEEE
Confidence 554 9999999999998877 443
No 142
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.06 E-value=2.2e-09 Score=95.86 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=114.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI- 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~- 175 (428)
.+.+.+.+.+. ..+.+|||||||||..+.++|+. ..-...-.|.+ ....-.+..+...++.+-..-+..|+..-.-
T Consensus 13 pIl~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 13 PILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP 91 (204)
T ss_pred HHHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence 44556666553 23336999999999999999997 33366688888 5555556666666766545555666655311
Q ss_pred --------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCc--cchhhhhhhhhccCCC
Q 014247 176 --------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHP--DRYSESIDFWRNVYGI 245 (428)
Q Consensus 176 --------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 245 (428)
.+.||+|+|..|.|+..+.. .+.+++.+.++|++||.|++..+..+...++.+ ..++....-....+|+
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~Gi 170 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGI 170 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCc
Confidence 25899999988777776555 789999999999999999986655443333322 1222222222234565
Q ss_pred -CcchhHHHHHhcCCCCceEEeecCC
Q 014247 246 -DMSAMMPLAKQCAFEEPSVETITGE 270 (428)
Q Consensus 246 -~~~~l~~~l~~~Gf~~~~~~~~~~~ 270 (428)
|++++..+..++|+.......++..
T Consensus 171 RD~e~v~~lA~~~GL~l~~~~~MPAN 196 (204)
T PF06080_consen 171 RDIEDVEALAAAHGLELEEDIDMPAN 196 (204)
T ss_pred cCHHHHHHHHHHCCCccCcccccCCC
Confidence 6888999999999987666555543
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=99.05 E-value=2e-09 Score=104.36 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=99.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHH-----HHCCC-CCcEEEEEccccccc--CCCcee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVV-----KANNL-TDKVIVLHGRVEDVE--IDEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~-----~~~~~-~~~v~~~~~d~~~l~--~~~~~D 180 (428)
...++||+||||+|..+..+.+. +..+|++||++ .+++.|++.. ....+ .++++++.+|+.+.- ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 55679999999999999888887 35799999999 9999998621 11222 468999999988742 237899
Q ss_pred EEEEecchhhh--cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcC
Q 014247 181 VIISEWMGYML--LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCA 258 (428)
Q Consensus 181 lVvs~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 258 (428)
+|+++...... .....-.++++.+++.|+|||+++......+ . ....+| .+...++++|
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~--------~--~~~~~~---------~i~~tL~~af 289 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA--------D--APLVYW---------SIGNTIEHAG 289 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh--------h--hHHHHH---------HHHHHHHHhC
Confidence 99997532111 1112236789999999999999886532111 0 011112 3567778888
Q ss_pred CCCceEEeecCCccccCCeeEE
Q 014247 259 FEEPSVETITGENVLTWPHVVK 280 (428)
Q Consensus 259 f~~~~~~~~~~~~~ls~p~~~~ 280 (428)
|........-|..--.|.+.+.
T Consensus 290 ~~v~~y~t~vPsyg~~WgF~~a 311 (374)
T PRK01581 290 LTVKSYHTIVPSFGTDWGFHIA 311 (374)
T ss_pred CceEEEEEecCCCCCceEEEEE
Confidence 8766555554433222444433
No 144
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.05 E-value=1.2e-09 Score=99.00 Aligned_cols=105 Identities=20% Similarity=0.306 Sum_probs=88.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE-ccccccc---CCCceeEE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH-GRVEDVE---IDEEVDVI 182 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~l~---~~~~~DlV 182 (428)
..+.++||+||++.|..++.+|.. . ..++++||.+ ++++.|++++++.|+.++|+++. +|..+.- ..++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 357899999999999999999986 3 4589999999 99999999999999999999999 5765532 24899999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
+... .....+.++..+.++|+|||+++....-
T Consensus 137 FIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 137 FIDA------DKADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred EEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 9754 4456788899999999999999977543
No 145
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.04 E-value=1.1e-09 Score=106.51 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH---------CCCCCcEEEEEcccccc------cC
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA---------NNLTDKVIVLHGRVEDV------EI 175 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~---------~~~~~~v~~~~~d~~~l------~~ 175 (428)
++.+|||+|||-|.-..-..+++.+.++|+|++ ..++.|+++... ....-...++.+|.... ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 788999999999998888888889999999999 999999988722 11112467788886542 11
Q ss_pred C-CceeEEEEec-chhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 176 D-EEVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 176 ~-~~~DlVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
. .+||+|-|.. |.+.+..+.....+|..+...|+|||.+|.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2 5999999976 677777888899999999999999999996543
No 146
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.03 E-value=1.6e-09 Score=97.54 Aligned_cols=100 Identities=24% Similarity=0.349 Sum_probs=71.6
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc--------C-
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE--------I- 175 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--------~- 175 (428)
.....++.+|||+|||+|.++..+++. +..+|+++|++++. .. .++.++++|+.+.. .
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhC
Confidence 444578899999999999999988876 34479999999432 11 24788888987642 2
Q ss_pred CCceeEEEEecchhh-----hcch---hhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYM-----LLYE---SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~-----l~~~---~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++||+|+++...+. +.+. ...+.++..+.++|+|||++++.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 367999998641110 1111 23478899999999999999863
No 147
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.03 E-value=1.5e-09 Score=102.80 Aligned_cols=109 Identities=28% Similarity=0.327 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEcccccc----cCCCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDV----EIDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l----~~~~~~DlVvs 184 (428)
.++++|||+=|=||.+++.++..|+++|++||.| ..++.|++++..|++. +++++++.|+.+. ...++||+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999999999999999999999 9999999999999986 6799999998763 12379999999
Q ss_pred ecchhh---hcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 185 EWMGYM---LLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 185 ~~~~~~---l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.+..+. ..-..+...++..+.++|+|||.++.+++
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 875322 11134577888889999999999886543
No 148
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=2.5e-09 Score=97.75 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=94.7
Q ss_pred ccChhhHHHHHHHHHhccC---CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEE
Q 014247 91 IKDRVRTETYRAAIMQNQS---FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIV 165 (428)
Q Consensus 91 ~~d~~r~~~~~~~i~~~~~---~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~ 165 (428)
+-.+..++.+.+++.+.+. ..++..+||+|||+|..++.++.. +...|+|||.| ..+..|.+++..+++.+++.+
T Consensus 124 lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 124 LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence 3345567777777776653 245568999999999999988875 66699999999 899999999999999999999
Q ss_pred EEccccccc------CCCceeEEEEecchhhh------------------------cchhhHHHHHHHHhcccccCeEEE
Q 014247 166 LHGRVEDVE------IDEEVDVIISEWMGYML------------------------LYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 166 ~~~d~~~l~------~~~~~DlVvs~~~~~~l------------------------~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
++-+++.-. +.+++|+++|++. |+. .....+-.++.-+.|.|+|||.+.
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 977665421 1389999999873 111 111124455667789999999988
Q ss_pred ccC
Q 014247 216 PSY 218 (428)
Q Consensus 216 ~~~ 218 (428)
+..
T Consensus 283 le~ 285 (328)
T KOG2904|consen 283 LEL 285 (328)
T ss_pred EEe
Confidence 653
No 149
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.02 E-value=1.8e-09 Score=106.37 Aligned_cols=110 Identities=26% Similarity=0.249 Sum_probs=91.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEcccccccC-----CCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDVEI-----DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l~~-----~~~~DlVv 183 (428)
..|++|||+=|=||.+++.+|..|+++|++||+| ..+..|+++++.|++. .++.++++|+.++-. ..+||+|+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3499999999999999999999999999999999 9999999999999984 568999999877522 25999999
Q ss_pred Eecchhh------hcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 184 SEWMGYM------LLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 184 s~~~~~~------l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
..+..+. .....+...++..+.++|+|||.++.+++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9875322 122345778888899999999999976543
No 150
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.02 E-value=2.6e-09 Score=97.93 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=98.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH-C------C----CCCcEEEE
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA-N------N----LTDKVIVL 166 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~-~------~----~~~~v~~~ 166 (428)
.+.+.+.. +...++.+||+.|||.|.-...+|+.|. +|+|+|+| ..++.+.+.... . . -..+|+++
T Consensus 25 ~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 25 ALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 44444444 3456778999999999999999999998 89999999 666665332111 0 0 12358999
Q ss_pred EcccccccCC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCC
Q 014247 167 HGRVEDVEID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYG 244 (428)
Q Consensus 167 ~~d~~~l~~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (428)
++|+.+++.. ++||+|+-......+ ...+.....+.+.++|+|||.+++-... | +. . .....-+.
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~lLi~l~-~--~~--~-------~~~GPPf~ 169 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGLLITLE-Y--PQ--G-------EMEGPPFS 169 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEE-S---C--S-------CSSSSS--
T ss_pred EcccccCChhhcCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEEEEEEE-c--CC--c-------CCCCcCCC
Confidence 9999998765 679999987644334 5667899999999999999995432111 1 00 0 01122345
Q ss_pred CCcchhHHHHHhcCCCCceEEe
Q 014247 245 IDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 245 ~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
++.+++..++. .+|+...++.
T Consensus 170 v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEEec
Confidence 66778888776 6776655443
No 151
>PLN02672 methionine S-methyltransferase
Probab=99.00 E-value=3.5e-09 Score=115.83 Aligned_cols=128 Identities=20% Similarity=0.252 Sum_probs=92.3
Q ss_pred hccChhhHHHHHHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCC-------
Q 014247 90 MIKDRVRTETYRAAIMQNQS-FIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNL------- 159 (428)
Q Consensus 90 ~~~d~~r~~~~~~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~------- 159 (428)
.+-.+..++.+.+.+..... ..++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|++++..|++
T Consensus 95 VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 95 IFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred cccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence 44445556666666433211 1245799999999999999999873 4599999999 999999999998754
Q ss_pred --------CCcEEEEEcccccccCC--CceeEEEEecchhhh------------cch-----------------------
Q 014247 160 --------TDKVIVLHGRVEDVEID--EEVDVIISEWMGYML------------LYE----------------------- 194 (428)
Q Consensus 160 --------~~~v~~~~~d~~~l~~~--~~~DlVvs~~~~~~l------------~~~----------------------- 194 (428)
.++++|+++|+.+.... .+||+|||++. |+. .++
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 25799999998764322 37999999873 110 010
Q ss_pred -hhHHHHHHHHhcccccCeEEEccC
Q 014247 195 -SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 195 -~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.....++....++|+|||.+++..
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEE
Confidence 123667788889999999998653
No 152
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.00 E-value=1.2e-09 Score=95.70 Aligned_cols=125 Identities=15% Similarity=0.035 Sum_probs=83.7
Q ss_pred EEEeCh-HHHHHHHHHHHHCC--CCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEE
Q 014247 139 YAVDAS-DIAVQANEVVKANN--LTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLI 214 (428)
Q Consensus 139 ~giD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 214 (428)
+|+|+| +|++.|+++.+..+ ..++++++++|+.+++++ ++||+|++.. .+++..++..++++++++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY---GLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc---hhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 489999 99999987765322 234699999999999876 6899999854 6777778999999999999999999
Q ss_pred EccCCeeeEee--------------cCCccchh---hhhhhhhcc-CCCCcchhHHHHHhcCCCCceEEe
Q 014247 215 LPSYATLYMAP--------------VTHPDRYS---ESIDFWRNV-YGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 215 v~~~~~~~~~~--------------~~~~~~~~---~~~~~~~~~-~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
++......-.. ........ .....+... ...+.+++..+++++||+.+....
T Consensus 78 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 78 SILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYE 147 (160)
T ss_pred EEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEE
Confidence 86533210000 00000000 000001111 223577889999999999876554
No 153
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.99 E-value=1.2e-09 Score=100.23 Aligned_cols=143 Identities=22% Similarity=0.249 Sum_probs=93.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-CCCceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-IDEEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~DlVvs~~~~~ 189 (428)
...++||||+|.|..+..++.. +++|++.|.| .|... +++.|. +++ +..++. .+.+||+|.|-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~r----L~~kg~----~vl--~~~~w~~~~~~fDvIscLN--- 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWR----LSKKGF----TVL--DIDDWQQTDFKFDVISCLN--- 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHH----HHhCCC----eEE--ehhhhhccCCceEEEeehh---
Confidence 4578999999999999999987 7799999999 88543 444443 333 222232 236899999854
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCcc----chhhhhhhhhccCCCCcchhHHHHHhcCCCCceEE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD----RYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
++..-..+..+|+.+++.|+|+|+++++..-.+..-++... .-.+........+.-..+.+.+.++.+||+...+.
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 77777789999999999999999998765433221121111 11111111111111124556688899999876655
Q ss_pred eec
Q 014247 266 TIT 268 (428)
Q Consensus 266 ~~~ 268 (428)
..+
T Consensus 240 r~P 242 (265)
T PF05219_consen 240 RLP 242 (265)
T ss_pred ccC
Confidence 443
No 154
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.98 E-value=2.5e-09 Score=95.40 Aligned_cols=105 Identities=23% Similarity=0.265 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-----CCCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-----IDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~~DlVvs 184 (428)
.++.+|||+-||||.+++.++.+|+++|+.||.+ ..+...+++++..+..+++.++..|+...- ...+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5789999999999999999999999999999999 999999999999888888999999965421 2489999999
Q ss_pred ecchhhhcchhhHHHHHHHHh--cccccCeEEEccC
Q 014247 185 EWMGYMLLYESMLGSVITARD--RWLKRGGLILPSY 218 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lv~~~ 218 (428)
++.. .. ......++..+. .+|+++|.+++..
T Consensus 121 DPPY-~~--~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 121 DPPY-AK--GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp --ST-TS--CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCCc-cc--chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 8732 11 111356666665 8999999999754
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.98 E-value=2e-09 Score=96.78 Aligned_cols=107 Identities=21% Similarity=0.374 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCC----------------------------
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNL---------------------------- 159 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~---------------------------- 159 (428)
...++.+|||||.+|.++..+|+. |+..|.|+|++ ..+..|+++++...-
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 467889999999999999999997 88899999999 899999987653210
Q ss_pred ------C-------CcEEEEEcccccccCCCceeEEEEecchh--hhc-chhhHHHHHHHHhcccccCeEEEcc
Q 014247 160 ------T-------DKVIVLHGRVEDVEIDEEVDVIISEWMGY--MLL-YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 160 ------~-------~~v~~~~~d~~~l~~~~~~DlVvs~~~~~--~l~-~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. .+..+...|+.++ ...+||+|+|-.+.- .|. +..-+..+++.+.++|.|||+||+.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0 0111111222211 126899999943211 121 2344899999999999999999964
No 156
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.98 E-value=2.1e-09 Score=95.23 Aligned_cols=105 Identities=28% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCC--CCCcEEEEEccccccc-----CCCcee
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANN--LTDKVIVLHGRVEDVE-----IDEEVD 180 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~--~~~~v~~~~~d~~~l~-----~~~~~D 180 (428)
...++++|||+|||+|..++.+++. +..+|+..|.++.+..++.+++.|+ ...++.+...|..+-. .+.+||
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3478899999999999999999998 7779999999988888899999887 5667888887764411 136899
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|++.- ++......+.+++.+.++|+++|.+++
T Consensus 122 ~IlasD---v~Y~~~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 122 VILASD---VLYDEELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp EEEEES-----S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred EEEEec---ccchHHHHHHHHHHHHHHhCCCCEEEE
Confidence 999854 566677799999999999999998654
No 157
>PLN02366 spermidine synthase
Probab=98.96 E-value=7.4e-09 Score=99.74 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC--CC-CCcEEEEEccccccc--C-CCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN--NL-TDKVIVLHGRVEDVE--I-DEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~l~--~-~~~~DlV 182 (428)
.+.++||+||||.|.++..+++. +..+|+.+|++ .+++.|++.+... ++ .++++++.+|+...- . .++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 45789999999999999999987 45699999999 8999999977542 23 358999999976542 1 3689999
Q ss_pred EEecchhhhc-chhhHHHHHHHHhcccccCeEEEccCC
Q 014247 183 ISEWMGYMLL-YESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 183 vs~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
++........ ....-.++++.+.+.|+|||+++....
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9965321111 111246789999999999999986543
No 158
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.96 E-value=6.6e-09 Score=105.64 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
..+.+.+.+.+.+...++.+|||+|||+|.+++.+++. +++|+|+|++ .+++.|++++..+++. +++++.+|+.+..
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHH
Confidence 34445556666665567789999999999999999987 5599999999 9999999999999885 5999999987631
Q ss_pred ----C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ----I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ----~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. ..+||+|+.++.-. .....+++.+.+ |+|++.++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~-----G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRK-----GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCCC-----CCCHHHHHHHHh-cCCCEEEEEc
Confidence 1 25799999876321 113455555544 7898877654
No 159
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.95 E-value=6.8e-09 Score=103.29 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=83.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-- 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-- 175 (428)
.+.+.+...+...++.+|||+|||+|.+++.++..+ .+|+|+|++ .+++.|+++++.+++. +++++++|+.+...
T Consensus 220 ~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~ 297 (374)
T TIGR02085 220 QLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ 297 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc
Confidence 333444444333466899999999999999999876 599999999 9999999999999885 69999999977532
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+||+|+.++.-. +....+++.+.. ++|+++++++
T Consensus 298 ~~~~D~vi~DPPr~-----G~~~~~l~~l~~-~~p~~ivyvs 333 (374)
T TIGR02085 298 MSAPELVLVNPPRR-----GIGKELCDYLSQ-MAPKFILYSS 333 (374)
T ss_pred CCCCCEEEECCCCC-----CCcHHHHHHHHh-cCCCeEEEEE
Confidence 25699999987532 223455555543 7899888765
No 160
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.94 E-value=9.4e-09 Score=94.21 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=84.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHH------H-C----CCCCcEEEE
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVK------A-N----NLTDKVIVL 166 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~------~-~----~~~~~v~~~ 166 (428)
.+.+.+... ...++.+||+.|||.|.-+..||+.|. +|+|+|+| ..++.+.+... . + --..+|+++
T Consensus 31 ~L~~~~~~l-~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 108 (226)
T PRK13256 31 FLVKHFSKL-NINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY 108 (226)
T ss_pred HHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEE
Confidence 344444433 234678999999999999999999999 79999999 66666544210 0 0 012369999
Q ss_pred EcccccccC----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 167 HGRVEDVEI----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 167 ~~d~~~l~~----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++|+.+++. .++||+|+-......+ .........+.+.++|+|||.++.
T Consensus 109 ~gD~f~l~~~~~~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 109 VADIFNLPKIANNLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred EccCcCCCccccccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 999999864 2689999876533333 556688999999999999998775
No 161
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.92 E-value=6.5e-09 Score=96.78 Aligned_cols=105 Identities=18% Similarity=0.126 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--------CCce
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------DEEV 179 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------~~~~ 179 (428)
.+.++||+||+++|.-++.+|+. + -.+|+++|.+ +.++.|++++...|+.++|+++.+++.+.-. .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 56789999999999999999986 2 3489999999 9999999999999999999999999876411 2689
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
|+|+... ........+..+.++|+|||++++...-+
T Consensus 158 D~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 158 DFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred cEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 9999754 23335666777788999999998765433
No 162
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.92 E-value=2.2e-08 Score=88.13 Aligned_cols=118 Identities=25% Similarity=0.256 Sum_probs=89.3
Q ss_pred HHHHHHhccCC--CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc--c
Q 014247 100 YRAAIMQNQSF--IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV--E 174 (428)
Q Consensus 100 ~~~~i~~~~~~--~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l--~ 174 (428)
.++++...+.. ..|.++||+=+|+|.+++.++.+|+.+++.||.+ ..+...+++++.-++..++.++..|+... .
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~ 108 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ 108 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh
Confidence 34444444432 7899999999999999999999999999999999 99999999999888888899999998854 2
Q ss_pred CC--CceeEEEEecchhhhcchhhHHHHHHH--HhcccccCeEEEccCC
Q 014247 175 ID--EEVDVIISEWMGYMLLYESMLGSVITA--RDRWLKRGGLILPSYA 219 (428)
Q Consensus 175 ~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~--~~~~LkpgG~lv~~~~ 219 (428)
.. +.||+|+.++... ....+....+.. -..+|+|+|.+++...
T Consensus 109 ~~~~~~FDlVflDPPy~--~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 109 LGTREPFDLVFLDPPYA--KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred cCCCCcccEEEeCCCCc--cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 22 3599999987432 111111233333 4688999999997654
No 163
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.91 E-value=1.3e-08 Score=96.81 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCC--C-CCcEEEEEccccccc--CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANN--L-TDKVIVLHGRVEDVE--IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~l~--~~~~~DlVv 183 (428)
..+++||+||||+|.++..+++.+ ..+|+++|++ .+++.|++.+...+ + ..+++++.+|..+.- .+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999998888874 6799999999 99999998765432 1 246888888876531 247899999
Q ss_pred Eecchhhhcc-hhhHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLLY-ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++........ .....++++.+.++|+|||+++...
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9753211111 1114678899999999999998753
No 164
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.91 E-value=2.4e-08 Score=88.91 Aligned_cols=121 Identities=26% Similarity=0.316 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC-e---------EEEEeCh-HHHHHHHHHHHHCCCCCcEE
Q 014247 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK-R---------VYAVDAS-DIAVQANEVVKANNLTDKVI 164 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~-~---------V~giD~s-~~~~~a~~~~~~~~~~~~v~ 164 (428)
-...+..++.......++..|||--||+|.+...++..+.. . ++|+|++ .++..|++++...++...+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 34567778888887888999999999999999988876321 2 7899999 99999999999999988999
Q ss_pred EEEccccccc-CCCceeEEEEecc-hhhhcc----hhhHHHHHHHHhcccccCeEEEc
Q 014247 165 VLHGRVEDVE-IDEEVDVIISEWM-GYMLLY----ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 165 ~~~~d~~~l~-~~~~~DlVvs~~~-~~~l~~----~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+.+.|+.+++ ..+.+|+|++++. |.-+.. ......+++++.++|++...++.
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 9999999999 4589999999873 222221 22356678888999999555443
No 165
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.91 E-value=6.2e-09 Score=97.32 Aligned_cols=109 Identities=18% Similarity=0.283 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCC-----CCCcEEEEEcccccc------cCC-C
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANN-----LTDKVIVLHGRVEDV------EID-E 177 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~l------~~~-~ 177 (428)
.++..+||+|||-|.-.+..-++|...++|+|++ -.++.|+++.+.-. ..-.+.|+.+|.... +.+ .
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 6788999999999999888889999999999999 78888888765321 112378999987542 223 3
Q ss_pred ceeEEEEec-chhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 178 EVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 178 ~~DlVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+||+|-|.. |.+.+..+.....+|..+.+.|+|||.+|-+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 499999965 556666677789999999999999999996544
No 166
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.89 E-value=1e-08 Score=92.41 Aligned_cols=108 Identities=30% Similarity=0.374 Sum_probs=77.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
.-+..+.+. ..++.+|||+.||.|.+++.+|+. .++.|+|+|++ ..++.++++++.|++.+++.++++|..++...
T Consensus 90 ~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~ 167 (200)
T PF02475_consen 90 TERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE 167 (200)
T ss_dssp HHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T
T ss_pred HHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc
Confidence 334555555 367899999999999999999983 45689999999 89999999999999999999999999998667
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
..+|.|+++.+.. ...+|..+..++++||.+-
T Consensus 168 ~~~drvim~lp~~-------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 GKFDRVIMNLPES-------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-EEEEEE--TSS-------GGGGHHHHHHHEEEEEEEE
T ss_pred cccCEEEECChHH-------HHHHHHHHHHHhcCCcEEE
Confidence 8999999865322 2245666778899998763
No 167
>PRK03612 spermidine synthase; Provisional
Probab=98.88 E-value=8e-09 Score=107.05 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHH--HHH---CCC-CCcEEEEEccccccc--CCCcee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEV--VKA---NNL-TDKVIVLHGRVEDVE--IDEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~--~~~---~~~-~~~v~~~~~d~~~l~--~~~~~D 180 (428)
.++++|||||||+|..+..+++.+. ++|+++|++ ++++.++++ +.. +.+ .++++++.+|..+.. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4568999999999999999998754 799999999 999999883 221 122 257999999988742 247999
Q ss_pred EEEEecchhhhc--chhhHHHHHHHHhcccccCeEEEccC
Q 014247 181 VIISEWMGYMLL--YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 181 lVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+|+++....... ....-.++++.+.+.|+|||++++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999975321110 01123568889999999999998764
No 168
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.87 E-value=3.3e-09 Score=94.84 Aligned_cols=149 Identities=21% Similarity=0.271 Sum_probs=107.0
Q ss_pred HHHHHHHHhc--cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC-CCcEEEEEcccccc
Q 014247 98 ETYRAAIMQN--QSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL-TDKVIVLHGRVEDV 173 (428)
Q Consensus 98 ~~~~~~i~~~--~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~l 173 (428)
.-|.+++.+. +...+|.+|||.+.|-|..+..++++|+.+|+.+|.+ ..++.|.-+-=..++ +..++++.+|+.++
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence 3445554443 3345799999999999999999999999999999999 777666432211111 23589999998876
Q ss_pred cC---CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCc-ch
Q 014247 174 EI---DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDM-SA 249 (428)
Q Consensus 174 ~~---~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 249 (428)
-. +++||+|+-.+.-+.+-.+..-.++.++++|+|+|||.++-...+ | . ....|.|+ ..
T Consensus 198 V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~----P---g----------~ryrG~d~~~g 260 (287)
T COG2521 198 VKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGN----P---G----------KRYRGLDLPKG 260 (287)
T ss_pred HhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC----C---C----------cccccCChhHH
Confidence 32 378999999886666666777889999999999999999832211 1 1 11245563 45
Q ss_pred hHHHHHhcCCCCce
Q 014247 250 MMPLAKQCAFEEPS 263 (428)
Q Consensus 250 l~~~l~~~Gf~~~~ 263 (428)
+.+.|++.||..+.
T Consensus 261 Va~RLr~vGF~~v~ 274 (287)
T COG2521 261 VAERLRRVGFEVVK 274 (287)
T ss_pred HHHHHHhcCceeee
Confidence 67778999998654
No 169
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.86 E-value=1.4e-08 Score=97.37 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=72.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
.+.+.|.+.....++.+|||||||+|.++..+++.+ .+|+|+|++ .++..+++++...+..++++++++|+.+.+. .
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~ 100 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-P 100 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-c
Confidence 344555666666788999999999999999999975 489999999 9999999998877755679999999988765 4
Q ss_pred ceeEEEEec
Q 014247 178 EVDVIISEW 186 (428)
Q Consensus 178 ~~DlVvs~~ 186 (428)
.||+|+++.
T Consensus 101 ~~d~VvaNl 109 (294)
T PTZ00338 101 YFDVCVANV 109 (294)
T ss_pred ccCEEEecC
Confidence 789999875
No 170
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.83 E-value=1.2e-08 Score=90.77 Aligned_cols=112 Identities=22% Similarity=0.294 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
.++.+|.|+|||.+.++..+.. +. +|...|+... + + .++.+|+.++|++ +.+|++|..+
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~----------n---~--~Vtacdia~vPL~~~svDv~VfcL--- 130 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAP----------N---P--RVTACDIANVPLEDESVDVAVFCL--- 130 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-----EEEEESS-S----------S---T--TEEES-TTS-S--TT-EEEEEEES---
T ss_pred CCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCC----------C---C--CEEEecCccCcCCCCceeEEEEEh---
Confidence 4467999999999999865532 23 7999998621 1 2 4677999999987 8999999876
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
.|.+.. ...++.++.|+|||||.|.+...... + -+...+...+++.||+....
T Consensus 131 SLMGTn-~~~fi~EA~RvLK~~G~L~IAEV~SR----------------f-----~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 131 SLMGTN-WPDFIREANRVLKPGGILKIAEVKSR----------------F-----ENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp ---SS--HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------S-HHHHHHHHHCTTEEEEEE
T ss_pred hhhCCC-cHHHHHHHHheeccCcEEEEEEeccc----------------C-----cCHHHHHHHHHHCCCeEEec
Confidence 444444 88899999999999999987432111 0 15677888889999986553
No 171
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.83 E-value=1.5e-08 Score=89.99 Aligned_cols=99 Identities=22% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCC-CceeEEEEecch
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEID-EEVDVIISEWMG 188 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~-~~~DlVvs~~~~ 188 (428)
.+.-|||||||+|..+..+...|. .++|+|+| .|++.|.+.- ++ -.++.+|+-. +++. +.||-+|+-..-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e----~e--gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERE----LE--GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhh----hh--cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467899999999999999998885 89999999 9999998632 11 2467777754 5664 999998883311
Q ss_pred hhhcc--------hhhHHHHHHHHhcccccCeEEEcc
Q 014247 189 YMLLY--------ESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~~l~~--------~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+.+ ..-+..++..++.+|++|++.++.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 12222 123567788899999999998864
No 172
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=2.5e-08 Score=95.53 Aligned_cols=119 Identities=23% Similarity=0.296 Sum_probs=97.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVEDVE 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l~ 174 (428)
...+.+++..+....+|..|||-=||||.+...+.-.|+ +|+|+|++ .|+.-|+.|++..++.+ ..+... |+++++
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lp 259 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLP 259 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCC
Confidence 346677788877889999999999999999999999998 89999999 99999999999998776 555555 999999
Q ss_pred CCC-ceeEEEEecc-hhhh--c---chhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 IDE-EVDVIISEWM-GYML--L---YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~~-~~DlVvs~~~-~~~l--~---~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+++ ++|.|++++. |-.. . -......+++.+.++|++||.+++.
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 985 4999999872 1111 1 1244788899999999999998863
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.82 E-value=2.2e-08 Score=94.69 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=68.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
.+.+.|.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.+++++.. ..+++++++|+.+++++
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP- 90 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch-
Confidence 345555666666788999999999999999999985 489999999 999999887644 24699999999987764
Q ss_pred ceeEEEEecc
Q 014247 178 EVDVIISEWM 187 (428)
Q Consensus 178 ~~DlVvs~~~ 187 (428)
.||.|++++.
T Consensus 91 ~~d~Vv~NlP 100 (258)
T PRK14896 91 EFNKVVSNLP 100 (258)
T ss_pred hceEEEEcCC
Confidence 5899999863
No 174
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.82 E-value=9.8e-08 Score=92.13 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC-CCCCcEEEEE-ccccccc-----CCCceeEE
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN-NLTDKVIVLH-GRVEDVE-----IDEEVDVI 182 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~l~-----~~~~~DlV 182 (428)
++.+|||||||+|.+...++.. ...+++|+|++ ..++.|++++..| ++.++|+++. .+..++. ..++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4679999999999776666554 33489999999 9999999999999 7998898864 3433321 23689999
Q ss_pred EEecc
Q 014247 183 ISEWM 187 (428)
Q Consensus 183 vs~~~ 187 (428)
+|++.
T Consensus 194 vcNPP 198 (321)
T PRK11727 194 LCNPP 198 (321)
T ss_pred EeCCC
Confidence 99984
No 175
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.81 E-value=1.9e-07 Score=86.93 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=109.0
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-- 174 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-- 174 (428)
.++|..+......-+||||.||.|...+.+... + ..+|...|.| ..++..++.++++|+.+.++|.++|+.+..
T Consensus 124 ~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 124 RQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL 203 (311)
T ss_pred HHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh
Confidence 334444333346679999999999988777665 2 3589999999 889999999999999998899999987742
Q ss_pred --CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCC-------C
Q 014247 175 --IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYG-------I 245 (428)
Q Consensus 175 --~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 245 (428)
+..+.++++...+...+.....+...+..+.+.|.|||.+|.+...++- ++-......-++..| -
T Consensus 204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP------Qle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP------QLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc------chHHHHHHHhcccCCCceEEEec
Confidence 2356799888765444444455777899999999999999976543321 110000011111111 2
Q ss_pred CcchhHHHHHhcCCCCce
Q 014247 246 DMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 246 ~~~~l~~~l~~~Gf~~~~ 263 (428)
+..++.++.+++||+...
T Consensus 278 sq~EmD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 278 SQAEMDQLVEAAGFEKID 295 (311)
T ss_pred CHHHHHHHHHHcCCchhh
Confidence 456789999999998643
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.79 E-value=2.1e-08 Score=95.53 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=66.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. .+++++++|+.+++++.-
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHc
Confidence 344555566667889999999999999999999866 99999999 999998876532 469999999998876532
Q ss_pred -eeEEEEec
Q 014247 179 -VDVIISEW 186 (428)
Q Consensus 179 -~DlVvs~~ 186 (428)
+|+|++++
T Consensus 105 ~~~~vv~Nl 113 (272)
T PRK00274 105 QPLKVVANL 113 (272)
T ss_pred CcceEEEeC
Confidence 58999886
No 177
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.78 E-value=2.9e-08 Score=98.55 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=80.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecchh
Q 014247 113 GKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGY 189 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~~~ 189 (428)
+.+|||++||+|.+++.++.. ++.+|+++|++ ..++.++++++.|++.+ ++++++|+..+.. ..+||+|+.+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 468999999999999999875 66699999999 99999999999999865 7899999877533 467999998873
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.....++....+.+++||++.++
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22455667766678999999987
No 178
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.78 E-value=4.9e-08 Score=88.10 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=77.3
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----cCCCceeEEEEecc
Q 014247 114 KVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----EIDEEVDVIISEWM 187 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----~~~~~~DlVvs~~~ 187 (428)
..+||||||.|.+...+|+. .-..++|+|+. ..+..|.+++...++.+ +.++++|+..+ ..++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999999999887 45589999999 88888888888888865 99999998773 23489999997542
Q ss_pred hhhhcc-----hhhHHHHHHHHhcccccCeEEEccC
Q 014247 188 GYMLLY-----ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~l~~-----~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.-..-. --.-+.++..+.++|+|||.+.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 211110 0124788999999999999987643
No 179
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.76 E-value=1e-07 Score=89.26 Aligned_cols=106 Identities=26% Similarity=0.271 Sum_probs=81.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
..+.......+..+|||||+|+|.++..++++ ..-+++..|.-.+++.+++ .++|+++.+|+. -+.+. +|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLPV-AD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCSS-ES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhcc-cc
Confidence 34455555566789999999999999999987 3348999999988877776 568999999998 45566 99
Q ss_pred EEEEecchhhhcch--hhHHHHHHHHhcccccC--eEEEccCC
Q 014247 181 VIISEWMGYMLLYE--SMLGSVITARDRWLKRG--GLILPSYA 219 (428)
Q Consensus 181 lVvs~~~~~~l~~~--~~~~~~l~~~~~~Lkpg--G~lv~~~~ 219 (428)
+++... +++.. .+...+|+++++.|+|| |+|++...
T Consensus 161 ~~~l~~---vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 161 VYLLRH---VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEEEES---SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ceeeeh---hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 999766 44443 44778899999999999 99987653
No 180
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.76 E-value=5.7e-08 Score=87.28 Aligned_cols=145 Identities=17% Similarity=0.116 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
...++||.|||.|+.+..+...-+++|-.+|+. .+++.|++.+... .....++.+..++++.++ .+||+|.+.|...
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 346999999999999987655558899999999 9999998765431 223478888889988765 7999999999432
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEe
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
.| ...++-.+|+++...|+|+|.+++-.... ......+++. ++.---+...+.++++++|+..+..+.
T Consensus 134 hL-TD~dlv~fL~RCk~~L~~~G~IvvKEN~~----~~~~~~~D~~----DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 134 HL-TDEDLVAFLKRCKQALKPNGVIVVKENVS----SSGFDEFDEE----DSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp GS--HHHHHHHHHHHHHHEEEEEEEEEEEEEE----SSSEEEEETT----TTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHhCcCCcEEEEEecCC----CCCCcccCCc----cCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 22 34568999999999999999998754321 1111111110 000001235688999999998765443
No 181
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.75 E-value=4.2e-08 Score=89.09 Aligned_cols=111 Identities=22% Similarity=0.322 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
....+|.|+|||-+.++. .. ..+|+.+|+-.. +-.++.+|+.++|++ +++|++|.++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CL--- 236 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCL--- 236 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeH---
Confidence 345689999999998865 22 348999997521 246788999999986 9999999865
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
.|... ++..++.+++|+|++||.+.+...... .-|...+...+..+||+.....
T Consensus 237 SLMgt-n~~df~kEa~RiLk~gG~l~IAEv~SR---------------------f~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 237 SLMGT-NLADFIKEANRILKPGGLLYIAEVKSR---------------------FSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred hhhcc-cHHHHHHHHHHHhccCceEEEEehhhh---------------------cccHHHHHHHHHHcCCeeeehh
Confidence 44444 488999999999999999986543211 1245557788889999875533
No 182
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.75 E-value=3.3e-08 Score=91.02 Aligned_cols=99 Identities=24% Similarity=0.340 Sum_probs=63.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEE-EEEcccc-----
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVI-VLHGRVE----- 171 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~----- 171 (428)
.+..++...-...++++|||+|||+|.++..+++.|+++|+|+|++ .|+... ++.+ .++. +...+++
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~---~~v~~~~~~ni~~~~~~ 135 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQD---ERVKVLERTNIRYVTPA 135 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcC---CCeeEeecCCcccCCHh
Confidence 3444554443346888999999999999999999999999999999 677551 1221 1121 2222333
Q ss_pred cccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 172 DVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 172 ~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
++..+ ..+|++++.. ..++..+..+|+| |.++
T Consensus 136 ~~~~d~~~~DvsfiS~-----------~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 136 DIFPDFATFDVSFISL-----------ISILPELDLLLNP-NDLT 168 (228)
T ss_pred HcCCCceeeeEEEeeh-----------HhHHHHHHHHhCc-CeEE
Confidence 22211 4677766532 2246677788888 7555
No 183
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.73 E-value=2.2e-07 Score=87.09 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=98.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH----C-----------------------------
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA----N----------------------------- 157 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~----~----------------------------- 157 (428)
...+||--|||.|+++..+|+.|+ .|.|.|.| -|+-...-.+.. +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 357999999999999999999999 89999999 886554443321 1
Q ss_pred ------CCCCcEEEEEcccccccCC----CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecC
Q 014247 158 ------NLTDKVIVLHGRVEDVEID----EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVT 227 (428)
Q Consensus 158 ------~~~~~v~~~~~d~~~l~~~----~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 227 (428)
....++....||+.++-.+ ++||+|++.. ++.-..++-+.++.+.++|||||..|=-.+-.|-..-.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F---FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF---FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE---EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 1123467777777765433 5999999865 67777778999999999999999776433322211100
Q ss_pred CccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEE
Q 014247 228 HPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
. . . -...--++.+++..++++.||+...-+
T Consensus 212 ~--~-~-----~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 212 S--I-P-----NEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred C--C-C-----CCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 0 0 0 000134567889999999999876544
No 184
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=9.5e-09 Score=91.56 Aligned_cols=99 Identities=22% Similarity=0.353 Sum_probs=84.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhh
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYM 190 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~ 190 (428)
...++|||||-|.++..+...+..+++-+|.| .|++.++.. +.+++ .+....+|-+.+++. .++|+|++.. .
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSl---s 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSL---S 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhh---h
Confidence 46799999999999999999999999999999 999887653 33444 367777888888875 8999999977 8
Q ss_pred hcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 191 LLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 191 l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++|..+++..+.++...|||+|.++-+
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhH
Confidence 889999999999999999999998743
No 185
>PRK04148 hypothetical protein; Provisional
Probab=98.71 E-value=2.4e-07 Score=77.43 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=61.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcH-HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGI-LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~-ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
+.+.|.+.+...++.+|||||||+|. ++..+++.|. .|+|+|++ ..++.++++ .+.++.+|+.+-.+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH
Confidence 45556666655667899999999996 9999999887 99999999 766666544 378899999876654
Q ss_pred -CceeEEEE
Q 014247 177 -EEVDVIIS 184 (428)
Q Consensus 177 -~~~DlVvs 184 (428)
+.+|+|.+
T Consensus 75 y~~a~liys 83 (134)
T PRK04148 75 YKNAKLIYS 83 (134)
T ss_pred HhcCCEEEE
Confidence 88999998
No 186
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.70 E-value=1.2e-07 Score=93.62 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=79.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+.+.+.+.+.+.. .+.+|||++||+|.+++.+++. +++|+|+|.+ ++++.|++++..+++.+ ++++.+|+.++...
T Consensus 184 ~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHH
Confidence 3444455554432 2347999999999999988886 5699999999 99999999999999864 99999998774210
Q ss_pred -----------------CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 -----------------EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 -----------------~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+||+|+.++.-. +..+.+++.+.+ |+++++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEEEE
Confidence 1379999987432 223455555543 67777754
No 187
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.68 E-value=6.2e-08 Score=87.19 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=76.6
Q ss_pred ccChhhHHHHHHHHHh-ccC---CCCCCEEEEEcCCCcH----HHHHHHHc---CCC---eEEEEeCh-HHHHHHHHHH-
Q 014247 91 IKDRVRTETYRAAIMQ-NQS---FIEGKVVVDVGCGTGI----LSIFCAQA---GAK---RVYAVDAS-DIAVQANEVV- 154 (428)
Q Consensus 91 ~~d~~r~~~~~~~i~~-~~~---~~~~~~VLDiGcGtG~----ls~~la~~---g~~---~V~giD~s-~~~~~a~~~~- 154 (428)
++|....+.+.+.+.. .+. ..+..+|+.+||++|- +++.+.+. ... +|+|+|+| .+++.|++-.
T Consensus 6 FRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y 85 (196)
T PF01739_consen 6 FRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIY 85 (196)
T ss_dssp TTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEE
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCC
Confidence 3444445566666662 321 1245699999999994 56666662 122 89999999 8998886521
Q ss_pred -------------HHC-------------CCCCcEEEEEccccc-ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcc
Q 014247 155 -------------KAN-------------NLTDKVIVLHGRVED-VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRW 207 (428)
Q Consensus 155 -------------~~~-------------~~~~~v~~~~~d~~~-l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~ 207 (428)
.+. .+..+|+|.+.|+.+ .+..+.||+|+|..+.- .........+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlI-YF~~~~~~~vl~~l~~~ 164 (196)
T PF01739_consen 86 PERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLI-YFDPETQQRVLRRLHRS 164 (196)
T ss_dssp EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGG-GS-HHHHHHHHHHHGGG
T ss_pred CHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEE-EeCHHHHHHHHHHHHHH
Confidence 000 122569999999888 44458999999977543 33455578999999999
Q ss_pred cccCeEEEccCC
Q 014247 208 LKRGGLILPSYA 219 (428)
Q Consensus 208 LkpgG~lv~~~~ 219 (428)
|+|||.|++...
T Consensus 165 L~pgG~L~lG~s 176 (196)
T PF01739_consen 165 LKPGGYLFLGHS 176 (196)
T ss_dssp EEEEEEEEE-TT
T ss_pred cCCCCEEEEecC
Confidence 999999998754
No 188
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.4e-07 Score=94.88 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=94.4
Q ss_pred ChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 93 DRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 93 d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
+...++.+.+.+.+.+...++.+|||+=||.|.+++.+|+. .++|+|+|++ ++++.|+++++.|++.+ ++|+.++++
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae 351 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAE 351 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHH
Confidence 34556677777777777778899999999999999999986 6699999999 99999999999999987 999999999
Q ss_pred cccCC----CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 172 DVEID----EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 172 ~l~~~----~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++... ..+|+|+.++.-..+ -+.+++.+.+ ++|-.+++++
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred HHhhhccccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEEEe
Confidence 87543 478999998743333 3456666654 6777777764
No 189
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.67 E-value=2e-07 Score=92.45 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=79.7
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE- 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~- 174 (428)
.+.+.+.+.+.+.. .+.+|||++||+|.+++.+++. +++|+|+|.+ .+++.|++++..+++. +++++.+|+.+.-
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 34555555554432 2357999999999999988886 6799999999 9999999999999986 5999999987631
Q ss_pred -C---------------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 -I---------------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 -~---------------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ ..+||+|+.++.- ....+.+++.+.+ |+++++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-----~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR-----AGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC-----CCCcHHHHHHHHc---cCCEEEEE
Confidence 1 1258999998753 2223455555543 66766654
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.65 E-value=3.4e-07 Score=86.38 Aligned_cols=82 Identities=20% Similarity=0.367 Sum_probs=66.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .++..++++... ..+++++++|+.+++.+ .
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-~ 91 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-D 91 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-H
Confidence 344555556667889999999999999999999865 79999999 999888876533 34699999999887764 5
Q ss_pred ee---EEEEec
Q 014247 179 VD---VIISEW 186 (428)
Q Consensus 179 ~D---lVvs~~ 186 (428)
+| +|+++.
T Consensus 92 ~d~~~~vvsNl 102 (253)
T TIGR00755 92 FPKQLKVVSNL 102 (253)
T ss_pred cCCcceEEEcC
Confidence 66 888875
No 191
>PLN02823 spermine synthase
Probab=98.60 E-value=2.9e-07 Score=89.71 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC--C-CCcEEEEEcccccccC--CCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN--L-TDKVIVLHGRVEDVEI--DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~l~~--~~~~DlVv 183 (428)
...++||.||+|.|.++..+.+. +..+|+.||++ .+++.|++.+..++ + ..+++++.+|..+.-. .++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999988886 56799999999 99999998875432 2 4689999999877522 37899999
Q ss_pred Eecchhh---hcchhhHHHHHH-HHhcccccCeEEEcc
Q 014247 184 SEWMGYM---LLYESMLGSVIT-ARDRWLKRGGLILPS 217 (428)
Q Consensus 184 s~~~~~~---l~~~~~~~~~l~-~~~~~LkpgG~lv~~ 217 (428)
++..... ....-.-.++++ .+.+.|+|||+++..
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9742211 001111346777 789999999998854
No 192
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.59 E-value=2.8e-07 Score=84.59 Aligned_cols=86 Identities=26% Similarity=0.382 Sum_probs=75.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+.|.......++..||+||.|||.++..+.++|+ +|+|+|++ .|+....++.+....+++.+++++|+...+++
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 4556677777789999999999999999999999955 89999999 99999999887777778999999999887764
Q ss_pred ceeEEEEec
Q 014247 178 EVDVIISEW 186 (428)
Q Consensus 178 ~~DlVvs~~ 186 (428)
.||++|++.
T Consensus 123 ~fd~cVsNl 131 (315)
T KOG0820|consen 123 RFDGCVSNL 131 (315)
T ss_pred ccceeeccC
Confidence 799999965
No 193
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.57 E-value=6.1e-07 Score=91.20 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=86.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVII 183 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVv 183 (428)
...+|.+|||++||.|.-+..+|.. +...|+++|++ .-+..+++++++.|+.+ +.+.+.|...+. +++.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEE
Confidence 4578999999999999999888886 23589999999 88999999999999865 889999987653 347899999
Q ss_pred Eecchhh---hcchh----------------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 184 SEWMGYM---LLYES----------------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 184 s~~~~~~---l~~~~----------------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
.+...+. +...+ .-..+|..+.++|||||+|+-+++++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 7542211 11111 12567888899999999999887764
No 194
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.55 E-value=7e-07 Score=82.07 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=81.5
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc----CCCceeEEEEecc
Q 014247 114 KVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE----IDEEVDVIISEWM 187 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~----~~~~~DlVvs~~~ 187 (428)
..+||||||.|.+...+|+. .-..++|||+. ..+..|.+.+.+.++. ++.+++.|+..+- .+++.|-|+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999987 45589999999 9999999999999887 5999999988752 2358999987542
Q ss_pred hhhhc--c---hhhHHHHHHHHhcccccCeEEEccC
Q 014247 188 GYMLL--Y---ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~l~--~---~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.-..- | ----+.+++.+.+.|+|||.+.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 11110 1 0124788999999999999998654
No 195
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=4.3e-07 Score=87.79 Aligned_cols=107 Identities=28% Similarity=0.353 Sum_probs=88.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Cc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~ 178 (428)
+..+.+.. ..|.+|||.=||-|.+++.+|+.|..+|+++|+| ..+..++++++.|++.+.+..+++|..++... +.
T Consensus 179 R~Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~ 256 (341)
T COG2520 179 RARVAELV--KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGV 256 (341)
T ss_pred HHHHHhhh--cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcccc
Confidence 44455554 5699999999999999999999988779999999 99999999999999999999999999998776 88
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|-|+...+ . ....++..+.+.+++||.+..
T Consensus 257 aDrIim~~p---~----~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 257 ADRIIMGLP---K----SAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred CCEEEeCCC---C----cchhhHHHHHHHhhcCcEEEE
Confidence 999996442 1 234556666777888998874
No 196
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.54 E-value=8.7e-07 Score=86.25 Aligned_cols=126 Identities=22% Similarity=0.203 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC-------------------------------------
Q 014247 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK------------------------------------- 136 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~------------------------------------- 136 (428)
..-.+.+..+|....+..++..++|--||+|.+...+|-.+..
T Consensus 173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 3445788889988888888899999999999999998887531
Q ss_pred ---eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecc-hhhhcchhhH----HHHHHHHhc
Q 014247 137 ---RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWM-GYMLLYESML----GSVITARDR 206 (428)
Q Consensus 137 ---~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~-~~~l~~~~~~----~~~l~~~~~ 206 (428)
.++|+|++ .+++.|+.+++..|+.+.|+|.++|+..+..+ +.+|+|||++. |.-+...... ..+.+.+++
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 37799999 99999999999999999999999999999877 89999999973 2223333223 344455556
Q ss_pred ccccCeEEEccCC
Q 014247 207 WLKRGGLILPSYA 219 (428)
Q Consensus 207 ~LkpgG~lv~~~~ 219 (428)
.++--+..++++.
T Consensus 333 ~~~~ws~~v~tt~ 345 (381)
T COG0116 333 LLAGWSRYVFTTS 345 (381)
T ss_pred HhcCCceEEEEcc
Confidence 6666667766543
No 197
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=2.7e-07 Score=80.75 Aligned_cols=112 Identities=22% Similarity=0.342 Sum_probs=82.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+.|.......+|++|||+|+|+|..+..++++|++.|++.|+. ......+-+++.|+. .|.+...|... .+.
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~ 141 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPP 141 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCc
Confidence 3456667776778899999999999999999999999999999999 555556667888876 38888888766 447
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.||+|+..- ++.....-..++....++...|-.+++.
T Consensus 142 ~~Dl~LagD---lfy~~~~a~~l~~~~~~l~~~g~~vlvg 178 (218)
T COG3897 142 AFDLLLAGD---LFYNHTEADRLIPWKDRLAEAGAAVLVG 178 (218)
T ss_pred ceeEEEeec---eecCchHHHHHHHHHHHHHhCCCEEEEe
Confidence 899999643 4444444566666444444444455543
No 198
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.53 E-value=5.8e-07 Score=88.89 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=81.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--CCceeEEEEecc
Q 014247 113 GKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--DEEVDVIISEWM 187 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~DlVvs~~~ 187 (428)
+.+|||+.||+|..++.+++. |+++|+++|++ ..++.++++++.|+.. +++++++|+..+-. ..+||+|..+++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 468999999999999999987 78899999999 9999999999999876 48999999887633 267999998762
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ .+..+++.+.+.+++||.+.++
T Consensus 124 G-------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEEEE
Confidence 1 2446788888889999999876
No 199
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.52 E-value=3.2e-07 Score=87.25 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=86.3
Q ss_pred hccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcH----HHHHHHHcC-----CCeEEEEeCh-HHHHHHHHHH-----
Q 014247 90 MIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGI----LSIFCAQAG-----AKRVYAVDAS-DIAVQANEVV----- 154 (428)
Q Consensus 90 ~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~----ls~~la~~g-----~~~V~giD~s-~~~~~a~~~~----- 154 (428)
+++|....+.+.+.+... .+..+|+..||+||- +++.+.+.+ .-+|+|+|+| .+++.|++-+
T Consensus 96 FFRd~~~f~~L~~~~~~~---~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~ 172 (287)
T PRK10611 96 FFREAHHFPILAEHARRR---SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEE 172 (287)
T ss_pred ccCCcHHHHHHHHHHHhc---CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHH
Confidence 345555555555554322 234799999999994 566665531 1279999999 9999887631
Q ss_pred -------------HH-----C-------CCCCcEEEEEcccccccC--CCceeEEEEecchhhhcchhhHHHHHHHHhcc
Q 014247 155 -------------KA-----N-------NLTDKVIVLHGRVEDVEI--DEEVDVIISEWMGYMLLYESMLGSVITARDRW 207 (428)
Q Consensus 155 -------------~~-----~-------~~~~~v~~~~~d~~~l~~--~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~ 207 (428)
.. . .+...|+|.+.|+.+.+. .+.||+|+|..+... ........+++.+.+.
T Consensus 173 ~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliy-F~~~~~~~vl~~l~~~ 251 (287)
T PRK10611 173 LKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIY-FDKTTQERILRRFVPL 251 (287)
T ss_pred HhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhc-CCHHHHHHHHHHHHHH
Confidence 00 0 123568888888877433 489999999763322 2345688999999999
Q ss_pred cccCeEEEccCC
Q 014247 208 LKRGGLILPSYA 219 (428)
Q Consensus 208 LkpgG~lv~~~~ 219 (428)
|+|||.|++...
T Consensus 252 L~pgG~L~lG~s 263 (287)
T PRK10611 252 LKPDGLLFAGHS 263 (287)
T ss_pred hCCCcEEEEeCc
Confidence 999999987654
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=6.1e-07 Score=83.44 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=70.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE- 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~- 177 (428)
..+.|.+.....++..|||||+|.|.++..+++.+. +|+++|++ .++...++... ..++++++++|+...+++.
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh
Confidence 456667777777889999999999999999999955 89999999 88888877754 3357999999999988875
Q ss_pred -ceeEEEEec
Q 014247 178 -EVDVIISEW 186 (428)
Q Consensus 178 -~~DlVvs~~ 186 (428)
.++.|+++.
T Consensus 94 ~~~~~vVaNl 103 (259)
T COG0030 94 AQPYKVVANL 103 (259)
T ss_pred cCCCEEEEcC
Confidence 789999986
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.50 E-value=2e-06 Score=76.64 Aligned_cols=95 Identities=31% Similarity=0.412 Sum_probs=76.5
Q ss_pred EEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhc
Q 014247 115 VVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLL 192 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~ 192 (428)
+++|||+|.|.-++.+|-. ...+++.+|.+ .-+...+..+..-++.+ ++++++++++.....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fd~v~aRAv----- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEEPEYRESFDVVTARAV----- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHHTTTTT-EEEEEEESS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecccccCCCccEEEeehh-----
Confidence 8999999999988887776 34589999999 88888888888888975 9999999999444589999999763
Q ss_pred chhhHHHHHHHHhcccccCeEEEcc
Q 014247 193 YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 193 ~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+..++.-+..+|++||.++.-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEE
Confidence 23677888889999999998853
No 202
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.8e-06 Score=74.73 Aligned_cols=101 Identities=19% Similarity=0.288 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 113 GKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
...+||||||+|..+-.+++. +...+.++|+| ..++..++.++.|+. ++.+++.|+..--.++++|+++-+.. |
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPP-Y 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPP-Y 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCC-c
Confidence 678999999999999999886 34478899999 888888888888765 37889999876544589999998762 1
Q ss_pred hh-------------------cchhhHHHHHHHHhcccccCeEEEc
Q 014247 190 ML-------------------LYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 190 ~l-------------------~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+. .+..-.+.++..+..+|.|.|.+++
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 11 1112267788888899999998874
No 203
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=4.7e-07 Score=75.23 Aligned_cols=83 Identities=23% Similarity=0.318 Sum_probs=69.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Cce
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEV 179 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~ 179 (428)
..|-.......|++++|+|||.|.++..++-.+...|.|+|+. +.++.+.+++.+..+ ++.++++|+.++.+. +.|
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeE
Confidence 3445555668899999999999999977777788899999999 999999998887655 479999999987765 899
Q ss_pred eEEEEec
Q 014247 180 DVIISEW 186 (428)
Q Consensus 180 DlVvs~~ 186 (428)
|.++.++
T Consensus 116 DtaviNp 122 (185)
T KOG3420|consen 116 DTAVINP 122 (185)
T ss_pred eeEEecC
Confidence 9999876
No 204
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.45 E-value=1.3e-06 Score=94.00 Aligned_cols=122 Identities=23% Similarity=0.249 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHcC---------------------------------------
Q 014247 95 VRTETYRAAIMQNQSF-IEGKVVVDVGCGTGILSIFCAQAG--------------------------------------- 134 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~g--------------------------------------- 134 (428)
.-.+.+..++...... .++..++|.+||+|.+...+|...
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 3346777778777665 567899999999999998887521
Q ss_pred ----CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC---CceeEEEEecc-hhhhcchhhHHHHHHHHh
Q 014247 135 ----AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID---EEVDVIISEWM-GYMLLYESMLGSVITARD 205 (428)
Q Consensus 135 ----~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~~~DlVvs~~~-~~~l~~~~~~~~~l~~~~ 205 (428)
..+++|+|++ .++..|++++..+|+.+.+++.++|+.+++.+ ++||+|++++. +.-+....++..+...+.
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 1269999999 99999999999999998899999999987653 46999999973 222222334555555554
Q ss_pred cccc---cCeEEEc
Q 014247 206 RWLK---RGGLILP 216 (428)
Q Consensus 206 ~~Lk---pgG~lv~ 216 (428)
..|+ +|+.+++
T Consensus 332 ~~lk~~~~g~~~~l 345 (702)
T PRK11783 332 RRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHhCCCCeEEE
Confidence 4444 7776643
No 205
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.43 E-value=5.9e-07 Score=77.89 Aligned_cols=72 Identities=22% Similarity=0.258 Sum_probs=56.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC----CceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID----EEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----~~~DlVvs~~ 186 (428)
.+|+|+.||.|..+..+|+. +++|++||++ ..++.|+.+++-.|..++|+++++|+.++... ..+|+|+.++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 37999999999999999998 5699999999 99999999999999999999999999886432 2289999876
No 206
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.43 E-value=4.8e-06 Score=75.52 Aligned_cols=118 Identities=25% Similarity=0.316 Sum_probs=84.7
Q ss_pred EEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCCceeEEEEecchhhhc
Q 014247 116 VVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDEEVDVIISEWMGYMLL 192 (428)
Q Consensus 116 VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~~~DlVvs~~~~~~l~ 192 (428)
|.||||--|.++..|.+.| +.+|+++|++ .-++.|++++...++.++++++.+|-.+ ++..+..|+|+...||..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l- 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL- 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH-
Confidence 6899999999999999986 4589999999 8999999999999999999999999554 4433448999988776544
Q ss_pred chhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCce
Q 014247 193 YESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 193 ~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 263 (428)
...+|.+....++....+++ .|.. +...++++|.+.||....
T Consensus 80 ----I~~ILe~~~~~~~~~~~lIL-------qP~~------------------~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 80 ----IIEILEAGPEKLSSAKRLIL-------QPNT------------------HAYELRRWLYENGFEIID 121 (205)
T ss_dssp ----HHHHHHHTGGGGTT--EEEE-------EESS-------------------HHHHHHHHHHTTEEEEE
T ss_pred ----HHHHHHhhHHHhccCCeEEE-------eCCC------------------ChHHHHHHHHHCCCEEEE
Confidence 67778877777766666664 3432 234678889999997644
No 207
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.42 E-value=4.5e-07 Score=88.01 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=123.5
Q ss_pred CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc--hhhhcchh-hHHHHHHHHhccccc
Q 014247 135 AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM--GYMLLYES-MLGSVITARDRWLKR 210 (428)
Q Consensus 135 ~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~--~~~l~~~~-~~~~~l~~~~~~Lkp 210 (428)
..+++-++.+ .......+++-...+.+ ++.+..= +..+++.|+|..+++ ..+..|.. .+......+...+-|
T Consensus 389 ~~~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i---~t~~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~ 464 (636)
T KOG1501|consen 389 WPKRIQARLSERERVIFNQRLIQLKLSN-NESVPAI---MTSPDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGD 464 (636)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhh---hcCCCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCC
Confidence 4466667777 33333333333333332 3333221 122345688877652 22222221 122234455667889
Q ss_pred CeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhc-CCCCceEEeec----CCccccCCeeEEEEeCC
Q 014247 211 GGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQC-AFEEPSVETIT----GENVLTWPHVVKHVDCY 285 (428)
Q Consensus 211 gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gf~~~~~~~~~----~~~~ls~p~~~~~~d~~ 285 (428)
+-++.|..+.+.+.+....+++... .-...+.|||++-+.++..++ .|....+...+ +..+++++..+.+|++.
T Consensus 465 ~~~V~P~~~~L~Ai~~kF~DL~~I~-S~~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY~~~~~~d~~eIL~F~~~ 543 (636)
T KOG1501|consen 465 ELRVEPHMGVLKAIPEKFEDLQNIA-SDVGTVNGFDLSFFDEISTKARTATDAIVDEQSLWEYAGIVKGDAVEILRFPID 543 (636)
T ss_pred ceeeccccchhhhhhHHHHHHHhhc-ccccccccceeeehhHHHHhhchhhhhhhccchhhhccCeecCCceeEEEeccC
Confidence 9999999888887776666554432 223468899999888887766 45444433322 45778999999999997
Q ss_pred CCCcccccceeeeeEEEEeeccceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecC
Q 014247 286 TIQIHELESIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTA 365 (428)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~ 365 (428)
..-.. .+..+.+.+.+.-|++.+|+|++|. .+.|||+
T Consensus 544 ~~V~~------Qk~~V~i~~~~sS~A~~mWME~~~~-------------------------------------~~nLSTG 580 (636)
T KOG1501|consen 544 GRVSS------QKCVVNIDNMSSSNAIPMWMEWEFG-------------------------------------GINLSTG 580 (636)
T ss_pred Ccccc------ceeEEEccCCCccccceeeEEeeeC-------------------------------------ceeeccc
Confidence 53222 2455777788999999999999995 4666666
Q ss_pred ---------CCCCCCceeeeEEeeCC
Q 014247 366 ---------PEDPPTHWQQTMIYFYD 382 (428)
Q Consensus 366 ---------P~~~~thW~q~~~~l~~ 382 (428)
|. |..|.||+||++..
T Consensus 581 LL~~~~~G~~~-WN~~~KQ~VYF~~t 605 (636)
T KOG1501|consen 581 LLSISSAGVPE-WNKGYKQGVYFPIT 605 (636)
T ss_pred ceeecCCCCcc-cCccccceeEEEhH
Confidence 33 66899999998743
No 208
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.4e-06 Score=77.19 Aligned_cols=98 Identities=20% Similarity=0.267 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCC--eEEEEeCh-HHHHHHHHHHHHCC--------C-CCcEEEEEcccccccCC
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GAK--RVYAVDAS-DIAVQANEVVKANN--------L-TDKVIVLHGRVEDVEID 176 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~~--~V~giD~s-~~~~~a~~~~~~~~--------~-~~~v~~~~~d~~~l~~~ 176 (428)
+.+|.+.||+|.|+|.|+..+++. |+. .++|||.- ++++.+++++...- + ..++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 489999999999999999998875 332 34999988 99999998887643 1 24578889998886554
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+||.|.+-. ....+.+++...|++||.+++
T Consensus 160 ~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGA---------AASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEcc---------CccccHHHHHHhhccCCeEEE
Confidence 8999999732 122334455566888887764
No 209
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.40 E-value=1.6e-06 Score=81.55 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=89.7
Q ss_pred hccChhhHHHHHHHHHhcc-CCC--CCCEEEEEcCCCcH----HHHHHHHcC------CCeEEEEeCh-HHHHHHHHHHH
Q 014247 90 MIKDRVRTETYRAAIMQNQ-SFI--EGKVVVDVGCGTGI----LSIFCAQAG------AKRVYAVDAS-DIAVQANEVVK 155 (428)
Q Consensus 90 ~~~d~~r~~~~~~~i~~~~-~~~--~~~~VLDiGcGtG~----ls~~la~~g------~~~V~giD~s-~~~~~a~~~~~ 155 (428)
++.++...+.+.+.+...+ ... ..-+|+-+||+||- +++.+.+.+ .-+|+|+|++ ..++.|+.-+=
T Consensus 71 FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y 150 (268)
T COG1352 71 FFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIY 150 (268)
T ss_pred hccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCC
Confidence 4556666666666666532 112 35799999999994 666666653 2389999999 99988865211
Q ss_pred H-----C-----------------------CCCCcEEEEEccccccc-CCCceeEEEEecchhhhcchhhHHHHHHHHhc
Q 014247 156 A-----N-----------------------NLTDKVIVLHGRVEDVE-IDEEVDVIISEWMGYMLLYESMLGSVITARDR 206 (428)
Q Consensus 156 ~-----~-----------------------~~~~~v~~~~~d~~~l~-~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~ 206 (428)
. . .+...|.|...|+.+-. ..+.||+|+|..+. .......-..++..++.
T Consensus 151 ~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVL-IYFd~~~q~~il~~f~~ 229 (268)
T COG1352 151 PSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVL-IYFDEETQERILRRFAD 229 (268)
T ss_pred ChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceE-EeeCHHHHHHHHHHHHH
Confidence 1 1 12235777777776655 56889999997643 23344558899999999
Q ss_pred ccccCeEEEccCC
Q 014247 207 WLKRGGLILPSYA 219 (428)
Q Consensus 207 ~LkpgG~lv~~~~ 219 (428)
.|+|||.|++...
T Consensus 230 ~L~~gG~LflG~s 242 (268)
T COG1352 230 SLKPGGLLFLGHS 242 (268)
T ss_pred HhCCCCEEEEccC
Confidence 9999999998654
No 210
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=2e-06 Score=77.49 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c------CCCcee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E------IDEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~------~~~~~D 180 (428)
..++++||||.=||.-++..|.+ .-.+|+++|++ ...+.+.+..+..+...+|+++++++.+. + ..+.||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 57789999999999988888876 23499999999 89999999999999999999999987652 1 138999
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeE
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYM 223 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 223 (428)
.++... +.......+.++.++|++||++++....+..
T Consensus 152 faFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 152 FAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 999743 2233346777888999999999987654443
No 211
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.39 E-value=2.9e-06 Score=76.94 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=65.1
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHH-------HCCC-CCcEEEEEcccccc
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVK-------ANNL-TDKVIVLHGRVEDV 173 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~-------~~~~-~~~v~~~~~d~~~l 173 (428)
|.+.+...++.+.+|||||.|.....+|.. ++++++|||+. .....|....+ ..+. ..++++.++|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 344566788999999999999988777654 88889999999 66666654322 2333 34688899998764
Q ss_pred cCC----CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 174 EID----EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 174 ~~~----~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+.. ...|+|+++. ... .+++...|.++...||+|.++|-
T Consensus 114 ~~~~~~~s~AdvVf~Nn---~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNN---TCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHGHC-SEEEE-----TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HhHhhhhcCCCEEEEec---ccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 321 4679999976 333 33455666777788999988873
No 212
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.37 E-value=3e-06 Score=72.31 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=84.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
...+.+...+....|.-||++|.|||.++..+.++|. ..++++|.| +......+.. +.+.++++|+.++..
T Consensus 35 ~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~ 108 (194)
T COG3963 35 ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHH
Confidence 4456666677778889999999999999999999864 489999999 8877665553 237799999988751
Q ss_pred ------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 ------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 ------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
...||.|+|.... ........-++|+.+...|.+||.++-
T Consensus 109 ~l~e~~gq~~D~viS~lPl-l~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPL-LNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred HHhhcCCCeeeeEEecccc-ccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 3789999996521 111223356778888888999998874
No 213
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.36 E-value=2.9e-06 Score=80.50 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=83.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCC--C-CCcEEEEEcccccccC--CCceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANN--L-TDKVIVLHGRVEDVEI--DEEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~l~~--~~~~DlVvs~~ 186 (428)
++||-||.|.|..+..+.+.. ..+++.||++ .+++.+++.+.... . ..|++++..|..++-. +++||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999984 6799999999 99999998775432 2 3789999999877532 36899999976
Q ss_pred chhhhcch-hhHHHHHHHHhcccccCeEEEccCCe
Q 014247 187 MGYMLLYE-SMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 187 ~~~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
....-..+ ..-..+++.+++.|+++|+++....+
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 33211111 11478899999999999999976443
No 214
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=3.9e-06 Score=77.11 Aligned_cols=106 Identities=25% Similarity=0.281 Sum_probs=86.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-- 176 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-- 176 (428)
..|...+...+|.+||+-|.|+|.++..++++ .-.+++..|+- .-++.|++.+++.++.+++++.+.|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 45677778899999999999999999999997 34699999999 88888999999999999999999999886553
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCe-EEE
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGG-LIL 215 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~lv 215 (428)
..+|.|+.+. +.+..++--++..||.+| +++
T Consensus 175 s~~aDaVFLDl--------PaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 175 SLKADAVFLDL--------PAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ccccceEEEcC--------CChhhhhhhhHHHhhhcCceEE
Confidence 6899998754 234555555566788766 443
No 215
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.36 E-value=2.5e-06 Score=84.16 Aligned_cols=93 Identities=26% Similarity=0.339 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
-++.+.+.+.+.+...++ .|||+-||.|.+++.+|+. +++|+|||.+ ++++.|++++..|++.+ ++|+.++++++.
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~ 257 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFA 257 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCC
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchh
Confidence 345666666777765555 8999999999999999997 6699999999 99999999999999975 999998876542
Q ss_pred C-----------------CCceeEEEEecchhhh
Q 014247 175 I-----------------DEEVDVIISEWMGYML 191 (428)
Q Consensus 175 ~-----------------~~~~DlVvs~~~~~~l 191 (428)
. ...+|+|+.++.-..+
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 1 1268999988754444
No 216
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.35 E-value=2.9e-07 Score=91.73 Aligned_cols=117 Identities=17% Similarity=0.292 Sum_probs=77.3
Q ss_pred HHHHHHHHHhccCC--CCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh----HHHHHHHHHHHHCCCCCcEEEEEc
Q 014247 97 TETYRAAIMQNQSF--IEG--KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS----DIAVQANEVVKANNLTDKVIVLHG 168 (428)
Q Consensus 97 ~~~~~~~i~~~~~~--~~~--~~VLDiGcGtG~ls~~la~~g~~~V~giD~s----~~~~~a~~~~~~~~~~~~v~~~~~ 168 (428)
...|.+.|.+.+.. ..+ .++||+|||+|.++..+..++. .+..+-+. .+++.|.+ .|+..-+.+ .
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~~--~ 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIGV--L 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhhh--h
Confidence 34677777777654 222 4899999999999999999865 33333332 33444433 344321211 1
Q ss_pred ccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 169 RVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 169 d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
-...++++ ..||+|.|.- ....+...-..+|-++.|+|+|||.++.+.+..+
T Consensus 171 ~s~rLPfp~~~fDmvHcsr--c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSR--CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccCCccchhhhhccc--ccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 23557776 8999999943 2344444445678899999999999999877665
No 217
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.35 E-value=2.4e-06 Score=80.05 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCC---CCcEEEEEcccccccC--CC-ceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNL---TDKVIVLHGRVEDVEI--DE-EVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~---~~~v~~~~~d~~~l~~--~~-~~DlV 182 (428)
.+.++||-||.|.|..+..+.+.. .++|+.||++ .+++.|++.+..... .++++++.+|....-. .+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 467899999999999999999874 6799999999 889999887654322 4689999999877422 25 89999
Q ss_pred EEecchhhhcch-hhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYE-SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+.+......... ..-.++++.+.+.|+|||+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 997643111111 12468899999999999999864
No 218
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=2.5e-06 Score=77.35 Aligned_cols=106 Identities=27% Similarity=0.312 Sum_probs=77.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcE-EEEEcccccccC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKV-IVLHGRVEDVEI- 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v-~~~~~d~~~l~~- 175 (428)
.+..++...--..+++++||||+.||.++..+.+.|+++|+|+|.. .++..-.+. ..+| .+...+++.+..
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHH
Confidence 4555666554467899999999999999999999999999999999 766543221 1233 333445655543
Q ss_pred --CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 --DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 --~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+..|+++|+. .+ -.+..+|..+..+|+|+|.+++
T Consensus 140 ~~~~~~d~~v~Dv---SF---ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDV---SF---ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEe---eh---hhHHHHHHHHHHhcCCCceEEE
Confidence 26789999975 11 2377888899999999997764
No 219
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.27 E-value=4.3e-06 Score=78.04 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC----------------CCC-----------C
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN----------------NLT-----------D 161 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~----------------~~~-----------~ 161 (428)
..+|.++||||||.-......|..-+++++..|.+ ...+..++.++.. |-. .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 35678999999999777655555568899999999 6666655554332 100 1
Q ss_pred cE-EEEEcccccccC-------CCceeEEEEec-chhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch
Q 014247 162 KV-IVLHGRVEDVEI-------DEEVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY 232 (428)
Q Consensus 162 ~v-~~~~~d~~~l~~-------~~~~DlVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 232 (428)
.| .++.+|+.+.+. +.+||+|++.. +...-........+++.+.++|||||.|++... + ....|
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~------l-~~t~Y 206 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV------L-GSTYY 206 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE------S-S-SEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE------c-CceeE
Confidence 13 477788876432 24699999865 222333445678889999999999999986421 1 11111
Q ss_pred hhhhhhhhccCCCCcchhHHHHHhcCCCCceEE
Q 014247 233 SESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
.-....+ ....++.+.+.+.++++||.....+
T Consensus 207 ~vG~~~F-~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 207 MVGGHKF-PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EETTEEE-E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred EECCEec-ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1000000 2345677889999999999765544
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=8.9e-06 Score=73.79 Aligned_cols=95 Identities=29% Similarity=0.367 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc-eeEEEEecchh
Q 014247 113 GKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE-VDVIISEWMGY 189 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~-~DlVvs~~~~~ 189 (428)
+.+++|||+|.|.-+..+|-. ...+|+-+|.. .-+...+....+-++.+ ++++++.++++....+ ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcccccccCcEEEeehc--
Confidence 589999999999988887743 33479999999 88888888888888875 9999999999876545 999999763
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
..+..+..-+..+|++||.++
T Consensus 145 -----a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 -----ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred -----cchHHHHHHHHHhcccCCcch
Confidence 236667777789999999876
No 221
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.15 E-value=1e-05 Score=83.72 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc---CCCceeEEEEec
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---IDEEVDVIISEW 186 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~DlVvs~~ 186 (428)
.+..+||||||.|.+...+|+. .-..++|+|+. ..+..|.+.+...++.| +.++..|+..+. .++++|.|+...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4679999999999999999987 44589999999 88888878888888865 888988876442 237899999754
Q ss_pred chhhhc--c---hhhHHHHHHHHhcccccCeEEEccC
Q 014247 187 MGYMLL--Y---ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~~l~--~---~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..-..- | .-.-+.+++.+.++|+|||.+.+.+
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 221110 0 0124778999999999999988654
No 222
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.13 E-value=7.1e-06 Score=73.22 Aligned_cols=94 Identities=28% Similarity=0.351 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc---------C--CCc
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE---------I--DEE 178 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---------~--~~~ 178 (428)
++.+|||+||++|.++..+.+.+ ..+|+|+|+.++ ... ..+.++++|+.+.. . .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999999997 569999999944 111 23677777765421 0 158
Q ss_pred eeEEEEecchhhhc--------chhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLL--------YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~--------~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+|......-. ........+.-+..+|+|||.+++
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 99999976211111 111233334455577999998875
No 223
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.12 E-value=7.9e-06 Score=78.05 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=65.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--C
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--D 176 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~ 176 (428)
+.+.+.+...++..+||.+||.|..+..+++.. ..+|+|+|.+ .++..|++++.. .++++++++++.++.. +
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHH
Confidence 344555556788899999999999999999984 3589999999 999999887654 4579999999987632 1
Q ss_pred C---ceeEEEEec
Q 014247 177 E---EVDVIISEW 186 (428)
Q Consensus 177 ~---~~DlVvs~~ 186 (428)
. ++|.|+.++
T Consensus 86 ~~~~~vDgIl~DL 98 (296)
T PRK00050 86 EGLGKVDGILLDL 98 (296)
T ss_pred cCCCccCEEEECC
Confidence 2 799999875
No 224
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.11 E-value=1.6e-05 Score=76.49 Aligned_cols=86 Identities=23% Similarity=0.273 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~~~ 189 (428)
.+|+++|||||++|.++..+++.|+ +|+|||..+|.... .. ..+|+.+.+|...... .+.+|+|+|...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MD---TGQVEHLRADGFKFRPPRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hC---CCCEEEEeccCcccCCCCCCCCEEEEecc--
Confidence 6889999999999999999999988 99999977764332 22 2468888888766554 588999999761
Q ss_pred hhcchhhHHHHHHHHhcccccC
Q 014247 190 MLLYESMLGSVITARDRWLKRG 211 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~Lkpg 211 (428)
..+..+++-+.++|..|
T Consensus 280 -----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 -----EKPARVAELMAQWLVNG 296 (357)
T ss_pred -----cCHHHHHHHHHHHHhcC
Confidence 23667777777788766
No 225
>PRK00536 speE spermidine synthase; Provisional
Probab=98.11 E-value=2.2e-05 Score=73.74 Aligned_cols=101 Identities=18% Similarity=-0.030 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC--CC-CCcEEEEEcccccccCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN--NL-TDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
...++||-||.|.|..+..+.+.. .+|+-||++ .+++.+++.+... ++ ..|++++.. +.+. ..++||+|++..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcC
Confidence 456899999999999999999985 499999999 8999998844331 22 356777752 2211 127899999874
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
+ ..+.+.+.+++.|+|||+++....+.+
T Consensus 148 ~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 148 E--------PDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred C--------CChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 1 236777889999999999997765443
No 226
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=4.9e-06 Score=83.01 Aligned_cols=78 Identities=27% Similarity=0.432 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
..-.+.+...|.+.+....++.+||+.||||.+++.+|+. +++|+|||++ ..+..|++++..||+++ .+|+++-+++
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~ 442 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED 442 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhh
Confidence 3444566777888888888899999999999999999985 8899999999 99999999999999986 9999997776
Q ss_pred c
Q 014247 173 V 173 (428)
Q Consensus 173 l 173 (428)
+
T Consensus 443 ~ 443 (534)
T KOG2187|consen 443 L 443 (534)
T ss_pred c
Confidence 4
No 227
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=5.6e-05 Score=74.65 Aligned_cols=116 Identities=22% Similarity=0.206 Sum_probs=88.0
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcCC---CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---C-C
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQAGA---KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---D-E 177 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~---~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~-~ 177 (428)
..+...+|.+|||+.++.|.=+..+|+... ..|+++|.+ .-+...++++++.|+.+ +.+++.|...++. . +
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccC
Confidence 456678999999999999998888888632 357999999 88889999999999987 7888888765432 1 3
Q ss_pred ceeEEEEecchhh--hc-----------------chhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 178 EVDVIISEWMGYM--LL-----------------YESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 178 ~~DlVvs~~~~~~--l~-----------------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
+||.|+.....+. .. ....-.++|....++|||||.|+-+++++.
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 6999998653211 11 011246678899999999999998887654
No 228
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.04 E-value=1.9e-05 Score=74.90 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=67.8
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
....+.|.+.+...++..|||||+|.|.++..+++.+ ++|+++|++ .++...++... ...+++++.+|+.++...
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence 4556666666666789999999999999999999997 699999999 88877777654 235799999999988765
Q ss_pred C----ceeEEEEec
Q 014247 177 E----EVDVIISEW 186 (428)
Q Consensus 177 ~----~~DlVvs~~ 186 (428)
. ...+|+++.
T Consensus 92 ~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 92 DLLKNQPLLVVGNL 105 (262)
T ss_dssp GHCSSSEEEEEEEE
T ss_pred HhhcCCceEEEEEe
Confidence 4 667888875
No 229
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.02 E-value=2.7e-05 Score=75.70 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=75.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--------CCCeEEEEeCh-HHHHHHHHHHHHCCCCCc-EEEEEc
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--------GAKRVYAVDAS-DIAVQANEVVKANNLTDK-VIVLHG 168 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--------g~~~V~giD~s-~~~~~a~~~~~~~~~~~~-v~~~~~ 168 (428)
.+.+.+.+.+...++.+|||-+||+|.+...+.+. ...+++|+|++ .++..|+-++.-++.... ..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 45566666666677889999999999998887762 34589999999 888888776655554332 457888
Q ss_pred ccccccC---CCceeEEEEecchhhh--cc----------------hhhHHHHHHHHhcccccCeEEEc
Q 014247 169 RVEDVEI---DEEVDVIISEWMGYML--LY----------------ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 169 d~~~l~~---~~~~DlVvs~~~~~~l--~~----------------~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|....+. ..+||+|++++..... .. ...-..++..+.+.|++||++.+
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 8654333 2689999998742222 00 01112467778899999998754
No 230
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.02 E-value=2.6e-05 Score=66.61 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-----cCCCeEEEEeCh-HHHHHHHHHHHHCC--CCCcEEEEEcccccccCCCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQ-----AGAKRVYAVDAS-DIAVQANEVVKANN--LTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~-----~g~~~V~giD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
.+...|+|+|||.|.++..++. ...-+|+|||.+ ...+.+.++.+..+ +..++.+..+++.+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 6678999999999999999999 434499999999 88888888887766 555688888877665445667777
Q ss_pred EE
Q 014247 183 IS 184 (428)
Q Consensus 183 vs 184 (428)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 75
No 231
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.01 E-value=2.8e-05 Score=74.29 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHH--HH---HCCC-CCcEEEEEcccccccC--CCceeE
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEV--VK---ANNL-TDKVIVLHGRVEDVEI--DEEVDV 181 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~--~~---~~~~-~~~v~~~~~d~~~l~~--~~~~Dl 181 (428)
...+||-+|.|.|.....+.+.. ..+|+-+|++ +|++.++++ ++ .+.+ ..+++++..|+.++-. .+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 44689999999999999999984 8899999999 999998842 22 2223 3589999999888643 379999
Q ss_pred EEEecchhh--hcchhhHHHHHHHHhcccccCeEEEccCCeeeE
Q 014247 182 IISEWMGYM--LLYESMLGSVITARDRWLKRGGLILPSYATLYM 223 (428)
Q Consensus 182 Vvs~~~~~~--l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 223 (428)
||.+..+-- -...-.-.++..-+.+.|+++|+++......|.
T Consensus 369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~ 412 (508)
T COG4262 369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF 412 (508)
T ss_pred EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc
Confidence 998653211 111122456777888999999999988766554
No 232
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.97 E-value=0.00016 Score=70.11 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=77.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-----CCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEcccc
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-----GAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVE 171 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-----g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~ 171 (428)
.....|...+ .++..++|+|||+|.-+..+.++ ...+++++|+| ++++.+.+.+....+.. .+.-+++|..
T Consensus 65 ~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 65 KHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 4444555554 46679999999999765544432 13479999999 99999888887333332 2344888876
Q ss_pred cc----cC---CCceeEEEEecchhhhcchh--hHHHHHHHHhc-ccccCeEEEccC
Q 014247 172 DV----EI---DEEVDVIISEWMGYMLLYES--MLGSVITARDR-WLKRGGLILPSY 218 (428)
Q Consensus 172 ~l----~~---~~~~DlVvs~~~~~~l~~~~--~~~~~l~~~~~-~LkpgG~lv~~~ 218 (428)
+. +. .....+++. +|+.+.+.. ....+|+.+.+ .|+|||.+++..
T Consensus 143 ~~l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 52 21 234567776 555555543 35677889988 999999998753
No 233
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.00013 Score=68.62 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHhccCCCC-------CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-----
Q 014247 94 RVRTETYRAAIMQNQSFIE-------GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT----- 160 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~-------~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~----- 160 (428)
..|...|...|.+.-...+ ..+||--|||.|.|+..+|..|. ++-|=|+| -|+-...=.+..-..+
T Consensus 125 ~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~I 203 (369)
T KOG2798|consen 125 RERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTI 203 (369)
T ss_pred hhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEE
Confidence 4555556555555433333 35899999999999999999998 78888999 7765433222111011
Q ss_pred ----------------------------------CcEEEEEcccccccCC----CceeEEEEecchhhhcchhhHHHHHH
Q 014247 161 ----------------------------------DKVIVLHGRVEDVEID----EEVDVIISEWMGYMLLYESMLGSVIT 202 (428)
Q Consensus 161 ----------------------------------~~v~~~~~d~~~l~~~----~~~DlVvs~~~~~~l~~~~~~~~~l~ 202 (428)
+......||+.+.-.. +.||+|+.++ ++.-....-+.++
T Consensus 204 YPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf---FIDTa~NileYi~ 280 (369)
T KOG2798|consen 204 YPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF---FIDTAHNILEYID 280 (369)
T ss_pred EeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE---EeechHHHHHHHH
Confidence 1122233444443221 4699999875 6666667888999
Q ss_pred HHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEe
Q 014247 203 ARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 203 ~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
.+..+|||||+.+=-.+-+|-..-... ... ...--+..+++..++...||+...-+.
T Consensus 281 tI~~iLk~GGvWiNlGPLlYHF~d~~g--~~~-----~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 281 TIYKILKPGGVWINLGPLLYHFEDTHG--VEN-----EMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred HHHHhccCCcEEEeccceeeeccCCCC--Ccc-----cccccccHHHHHHHHHhcCcEEEEeee
Confidence 999999999998854444442111100 000 001224567888888888998765443
No 234
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=6.1e-06 Score=69.97 Aligned_cols=116 Identities=18% Similarity=0.309 Sum_probs=78.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCC--cEEEEEccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTD--KVIVLHGRVED 172 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~--~v~~~~~d~~~ 172 (428)
+++...+.+......|.+||++|.| +|..++++|.. ....|...|-+ ..++..++....|.... ++.++.-+...
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence 3455556666666778999999999 56667777765 56689999999 78877777776663221 23222222221
Q ss_pred ---ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 173 ---VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 173 ---l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.....+||.|++.- +++.......+.+.+.++|+|.|..++
T Consensus 95 aqsq~eq~tFDiIlaAD---ClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 95 AQSQQEQHTFDIILAAD---CLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred hHHHHhhCcccEEEecc---chhHHHHHHHHHHHHHHHhCcccceeE
Confidence 11226899999943 444445578889999999999998654
No 235
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=3.7e-05 Score=68.93 Aligned_cols=96 Identities=29% Similarity=0.364 Sum_probs=67.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC--------C-Cc
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------D-EE 178 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------~-~~ 178 (428)
..++.+|+|+|+-.|.++..+++. +. .+|+|+|+.+|-. . .+|.++++|+++-+. . .+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------~-~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------I-PGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------C-CCceEEeeeccCccHHHHHHHHcCCCC
Confidence 356799999999999999999997 32 2499999986631 1 239999999987432 2 45
Q ss_pred eeEEEEecchhhh-----cc---hhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYML-----LY---ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l-----~~---~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+|......- .+ ......++.-...+|+|||.++.
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 7999997632111 11 11234445556789999999884
No 236
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.90 E-value=2e-05 Score=77.48 Aligned_cols=106 Identities=25% Similarity=0.250 Sum_probs=88.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecc
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWM 187 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~ 187 (428)
..++..++|+|||.|....+.+..+...++|++.+ ..+..+.......++.++..++.+|+.+.+++ ..||.+-+.-
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld- 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE- 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe-
Confidence 36677999999999999999999876699999999 77777777666666777777788888887775 8999999743
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...+.++...++.+++++++|||+++...
T Consensus 187 --~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 187 --VVCHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred --ecccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 67788889999999999999999998543
No 237
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.89 E-value=5.4e-05 Score=68.05 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=84.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCC----CceeEEEEecchh
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID----EEVDVIISEWMGY 189 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----~~~DlVvs~~~~~ 189 (428)
.++|||||=+...... ..+.-.|+.||++.. .-.+.+.|+.+.+++ ++||+|++.++..
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 6999999986554332 233336999999831 134567788777653 7999999998776
Q ss_pred hhcchhhHHHHHHHHhcccccCeE-----EEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGL-----ILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~-----lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
++......-++++.+.++|+|+|. +++- .|..+ ..+...++.+.|..++...||.....
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV------lP~~C----------v~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV------LPLPC----------VTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE------eCchH----------hhcccccCHHHHHHHHHhCCcEEEEE
Confidence 776667788999999999999999 5542 22111 12334467788999999999987554
No 238
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.88 E-value=1.1e-05 Score=65.12 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=44.3
Q ss_pred EEEcCCCcHHHHHHHHc----CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccc--cCC-CceeEEEEecchh
Q 014247 117 VDVGCGTGILSIFCAQA----GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDV--EID-EEVDVIISEWMGY 189 (428)
Q Consensus 117 LDiGcGtG~ls~~la~~----g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l--~~~-~~~DlVvs~~~~~ 189 (428)
||||+..|..+..+++. +..+++++|..+....+++.++..++.++++++.++..+. ..+ +++|+|+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--- 77 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC---
Confidence 68999999988877764 2237999999943445566666667777899999998764 122 7999999865
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
. +........+..+.+.|+|||++++.+
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 112335666788889999999998754
No 239
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.88 E-value=3.9e-06 Score=73.99 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYM 190 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~ 190 (428)
.+.++||+|+|.|-.+..++.. +.+|++.|.| .|....+++ +. .++. .++-...+-++|+|.|-. .
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y----nVl~-~~ew~~t~~k~dli~clN---l 178 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY----NVLT-EIEWLQTDVKLDLILCLN---L 178 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC----ceee-ehhhhhcCceeehHHHHH---H
Confidence 3479999999999999999886 6789999999 887665443 22 2221 112222235799999843 5
Q ss_pred hcchhhHHHHHHHHhccccc-CeEEEccCCeeeEeecC--CccchhhhhhhhhccCCCC----cchhHHHHHhcCCCCce
Q 014247 191 LLYESMLGSVITARDRWLKR-GGLILPSYATLYMAPVT--HPDRYSESIDFWRNVYGID----MSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 191 l~~~~~~~~~l~~~~~~Lkp-gG~lv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~Gf~~~~ 263 (428)
+..-.++-++|+.+..+|+| .|++|++-.-.+.--++ ...++...-... +..|-+ ...+.+++++|||....
T Consensus 179 LDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~L-e~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 179 LDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLL-ENNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHH-HhcCccHHHHHHHHHHHHHhcCchhhh
Confidence 65556788999999999999 88777553222211111 111111100011 112222 34577889999997643
No 240
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.85 E-value=0.00015 Score=69.06 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
.+...+......+|||+|||.|.....+... ...+++++|.| .|.+.++..++................+...-.+.
T Consensus 24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (274)
T PF09243_consen 24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPD 103 (274)
T ss_pred HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCC
Confidence 3333344567789999999999766555543 35689999999 99999888776542211111111111111111344
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhccccc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKR 210 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkp 210 (428)
|+|++..+..-+.. .....+++.+...+.+
T Consensus 104 DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 104 DLVIASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred cEEEEehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 99998764444444 4567777777776665
No 241
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.85 E-value=0.00012 Score=70.11 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=85.9
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc---CCCcee
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---IDEEVD 180 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~D 180 (428)
.+...++..|||+.++.|.=+..++.. +...|++.|++ .-+...++++++.|..+ +.++..|..... ....||
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccc
Confidence 345678999999999999988888886 24699999999 88888899999998876 777778887762 224699
Q ss_pred EEEEecchhhh---cch---------h-------hHHHHHHHHhccc----ccCeEEEccCCee
Q 014247 181 VIISEWMGYML---LYE---------S-------MLGSVITARDRWL----KRGGLILPSYATL 221 (428)
Q Consensus 181 lVvs~~~~~~l---~~~---------~-------~~~~~l~~~~~~L----kpgG~lv~~~~~~ 221 (428)
.|+.+...+.. ... . .-.++|+.+.+++ ||||+++.+++++
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 99996532211 100 1 1356788899999 9999999877654
No 242
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.83 E-value=0.0002 Score=60.73 Aligned_cols=98 Identities=28% Similarity=0.371 Sum_probs=66.5
Q ss_pred EEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--ccCCC--ceeEEEEecch
Q 014247 116 VVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--VEIDE--EVDVIISEWMG 188 (428)
Q Consensus 116 VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--l~~~~--~~DlVvs~~~~ 188 (428)
+||+|||+|... .++.... ..++++|++ .++..++......+.. .+.+..++... +++.. .||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVISLL-- 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEeeee--
Confidence 999999999976 4444322 379999999 7777744443221111 16788888776 55554 799994322
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
...+.. ....+..+.+.|+|+|.+++...
T Consensus 128 -~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 -VLHLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred -ehhcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 222222 78889999999999999887644
No 243
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.80 E-value=7e-05 Score=63.85 Aligned_cols=58 Identities=41% Similarity=0.559 Sum_probs=50.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCC-eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 115 VVVDVGCGTGILSIFCAQAGAK-RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~-~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
+|||||||.|.++..+++.+.+ +|+++|++ .+...++++++.+++.+ +.+++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeCC
Confidence 4899999999999999998654 89999999 99999999999988864 88888776653
No 244
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.80 E-value=0.00026 Score=63.97 Aligned_cols=112 Identities=23% Similarity=0.282 Sum_probs=75.7
Q ss_pred HHHHHHHHhc---cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 98 ETYRAAIMQN---QSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 98 ~~~~~~i~~~---~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
..+..+|..- +...+|.+||-+|+.+|.....++.. | -..|+|+|.| .........+++. .+|--+-.|++
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDAR 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TT
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCC
Confidence 3566666554 34678999999999999998888886 4 4589999999 6655555554443 35777778887
Q ss_pred ccc----CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 172 DVE----IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 172 ~l~----~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.-. +-+.+|+|+++. .......-++..+..+||+||.+++.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DV-----aQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDV-----AQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp SGGGGTTTS--EEEEEEE------SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecC-----CChHHHHHHHHHHHhhccCCcEEEEE
Confidence 532 127899999964 23344677788888999999988864
No 245
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.75 E-value=0.00077 Score=60.68 Aligned_cols=100 Identities=25% Similarity=0.336 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~~~DlVvs~~~ 187 (428)
..+.++.||||--|.+..++.+. .+..+++.|++ .-++.|.+++..+++.+++++..+|... +.....+|+|+...|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 34556999999999999999997 46689999999 8899999999999999999999999743 333468999999877
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
|..+ ...+|.+-...|+.=-+++
T Consensus 95 GG~l-----I~~ILee~~~~l~~~~rlI 117 (226)
T COG2384 95 GGTL-----IREILEEGKEKLKGVERLI 117 (226)
T ss_pred cHHH-----HHHHHHHhhhhhcCcceEE
Confidence 6444 6667777766666433444
No 246
>PRK10742 putative methyltransferase; Provisional
Probab=97.75 E-value=0.00012 Score=67.58 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=65.6
Q ss_pred HHHHhccCCCCCC--EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC------C--CCCcEEEEEccc
Q 014247 102 AAIMQNQSFIEGK--VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN------N--LTDKVIVLHGRV 170 (428)
Q Consensus 102 ~~i~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~------~--~~~~v~~~~~d~ 170 (428)
+.|.+.+...++. +|||+-+|+|..++.++..|+ +|+++|.+ .+....++.++.. + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 4455556666777 999999999999999999999 49999999 7766666666652 1 225799999998
Q ss_pred cccc--CCCceeEEEEecc
Q 014247 171 EDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 171 ~~l~--~~~~~DlVvs~~~ 187 (428)
.++- ....||+|+..+|
T Consensus 155 ~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPM 173 (250)
T ss_pred HHHHhhCCCCCcEEEECCC
Confidence 7652 2357999999884
No 247
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.70 E-value=0.00031 Score=66.96 Aligned_cols=89 Identities=21% Similarity=0.205 Sum_probs=54.4
Q ss_pred HHHHHHHhccCCCC-----CCEEEEEcCCCc-HHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC-CCCCcEEEEEcc
Q 014247 99 TYRAAIMQNQSFIE-----GKVVVDVGCGTG-ILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN-NLTDKVIVLHGR 169 (428)
Q Consensus 99 ~~~~~i~~~~~~~~-----~~~VLDiGcGtG-~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d 169 (428)
.|..+|...+.... ..++||||||.. +..+..++. |. +++|.|++ ..++.|++++..| ++.++|+++...
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 34555555543222 458999999976 456666554 66 99999999 9999999999999 999999998764
Q ss_pred ccc-c----c-CCCceeEEEEecch
Q 014247 170 VED-V----E-IDEEVDVIISEWMG 188 (428)
Q Consensus 170 ~~~-l----~-~~~~~DlVvs~~~~ 188 (428)
-.. + . ..+.||+.+|++..
T Consensus 163 ~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 163 NPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp ST-SSTTTSTT--S-EEEEEE----
T ss_pred CccccchhhhcccceeeEEecCCcc
Confidence 322 1 1 12789999999843
No 248
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.67 E-value=0.00013 Score=70.02 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=74.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhc
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLL 192 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~ 192 (428)
...+|+|.|.|..+..+... +.+|-++++. +.+..++.... .| |+.+.+|+.+- . .+-|+|+..| +++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~-P~~daI~mkW---iLh 247 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-T-PKGDAIWMKW---ILH 247 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-C-CCcCeEEEEe---ecc
Confidence 78999999999999888885 5589999999 77766655543 32 78888887665 3 2457999988 555
Q ss_pred ch--hhHHHHHHHHhcccccCeEEEccCC
Q 014247 193 YE--SMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 193 ~~--~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+. .+..++|++++..|+|||.+++-..
T Consensus 248 dwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 248 DWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 54 4588999999999999998886543
No 249
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.63 E-value=0.00021 Score=74.65 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC---------CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc------cC
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAG---------AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV------EI 175 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g---------~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l------~~ 175 (428)
...+|||.|||+|.+...+++.. ...++|+|++ ..+..++.++...+. ..+.+.+.|.... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999988887642 1378999999 888888888766541 1245555553321 11
Q ss_pred CCceeEEEEecc
Q 014247 176 DEEVDVIISEWM 187 (428)
Q Consensus 176 ~~~~DlVvs~~~ 187 (428)
.++||+|++++.
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 268999999984
No 250
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.59 E-value=0.0006 Score=60.88 Aligned_cols=100 Identities=27% Similarity=0.327 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC--CCcEEEEEccccccc---CCCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL--TDKVIVLHGRVEDVE---IDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~l~---~~~~~DlVvs 184 (428)
.+|.+||.||-|.|+..-.+.++...+=+.||.. ...+..+ .+|+ .++|.++.+..++.. .++.||-|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr----~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMR----DWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHH----hcccccccceEEEecchHhhhccccccCcceeEe
Confidence 7889999999999999999988877778889999 7765544 4454 356888888776642 2377999997
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. +-.+-.++..+.+.+.++|||+|++-..
T Consensus 176 DT---y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DT---YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ec---hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 65 4445567888999999999999988643
No 251
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.58 E-value=4.8e-05 Score=67.95 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc----CC-CceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE----ID-EEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~----~~-~~~DlVvs~ 185 (428)
...+|+|.-||-|..+...|..++ .|++||++ .-+..|+++++-.|..++|+|++||+.++- +. ..+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 556899999999999888888877 89999999 788999999999999999999999988753 22 446677754
Q ss_pred c
Q 014247 186 W 186 (428)
Q Consensus 186 ~ 186 (428)
+
T Consensus 173 p 173 (263)
T KOG2730|consen 173 P 173 (263)
T ss_pred C
Confidence 3
No 252
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00061 Score=68.16 Aligned_cols=112 Identities=16% Similarity=0.293 Sum_probs=79.3
Q ss_pred HHHHHhccCCCCCC-EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-C
Q 014247 101 RAAIMQNQSFIEGK-VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-E 177 (428)
Q Consensus 101 ~~~i~~~~~~~~~~-~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~ 177 (428)
...|..++ .+-. ++|-+|||.-.++..+-+.|...|+.+|.| ..++.+...-. .-..-..+...|+..+.++ +
T Consensus 38 ~~~i~~~~--~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~fedE 113 (482)
T KOG2352|consen 38 SGSIMKYL--SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVFEDE 113 (482)
T ss_pred HHHHHHhh--chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccCCCc
Confidence 33444443 3334 999999999999999999999999999999 44444333221 1123478999999998886 8
Q ss_pred ceeEEEEec-chhhhcchh------hHHHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEW-MGYMLLYES------MLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~-~~~~l~~~~------~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+||+|+... +...+..+. .....+.++.++|++||+.+.
T Consensus 114 SFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 114 SFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred ceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 999999865 333333322 234568889999999998763
No 253
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.46 E-value=0.00036 Score=61.27 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=93.1
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCC-eEEEEeChHHHHHH-------HHHHHHCCCCCcEEEEEcccccccC
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAK-RVYAVDASDIAVQA-------NEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~-~V~giD~s~~~~~a-------~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
+......++.+|+|+=.|.|.++..++.. |++ .|++.-..+....+ ....++.... +++.+-.+...+..
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~~ 119 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALGA 119 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccCC
Confidence 34556789999999999999999999887 433 78877655331111 1112222222 36777777777776
Q ss_pred CCceeEEEEecchhhh----cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhH
Q 014247 176 DEEVDVIISEWMGYML----LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMM 251 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l----~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (428)
+++.|++......+.+ .+......+..++.+.|||||++++.+-... +-.. . .+ -.....++.....
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~--pG~~--~-~d----t~~~~ri~~a~V~ 190 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRAD--PGSG--L-SD----TITLHRIDPAVVI 190 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecccc--CCCC--h-hh----hhhhcccChHHHH
Confidence 6888888875433222 2345578889999999999998876543211 1000 0 00 1123456777778
Q ss_pred HHHHhcCCCC
Q 014247 252 PLAKQCAFEE 261 (428)
Q Consensus 252 ~~l~~~Gf~~ 261 (428)
...+++||..
T Consensus 191 a~veaaGFkl 200 (238)
T COG4798 191 AEVEAAGFKL 200 (238)
T ss_pred HHHHhhccee
Confidence 8888899964
No 254
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.44 E-value=0.0014 Score=61.91 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCcHH-HHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHH-HCCCCCcEEEEEcccccccCC-CceeEEEEec
Q 014247 113 GKVVVDVGCGTGIL-SIFCAQA-G-AKRVYAVDAS-DIAVQANEVVK-ANNLTDKVIVLHGRVEDVEID-EEVDVIISEW 186 (428)
Q Consensus 113 ~~~VLDiGcGtG~l-s~~la~~-g-~~~V~giD~s-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~ 186 (428)
..+|+=||||.=.+ ++.+++. + ...|+++|++ ..++.+++.+. ..++..++.|+.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999997554 4555543 3 2379999999 88999998887 567888999999999887654 7899998754
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ +......-.+++..+.+.++||++++..
T Consensus 201 l--Vg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 L--VGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T---S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred h--cccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 1 2212335788999999999999998864
No 255
>PHA01634 hypothetical protein
Probab=97.38 E-value=0.00088 Score=54.73 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~ 186 (428)
.++++|+|||++.|..+++++-.||++|+++|++ .+....+++.+.+..-++..-.. +++.. +.||+.+...
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iDC 100 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMDC 100 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEEc
Confidence 6789999999999999999999999999999999 88888888877764433222111 23323 7889887643
No 256
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.37 E-value=0.0001 Score=68.70 Aligned_cols=96 Identities=21% Similarity=0.147 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~ 188 (428)
..+..+||+|||.|-... ......++|+|.+ ..+..+++. +...+..+|+.+++.. .+||.+++..+.
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhh
Confidence 458899999999986542 1123368999999 887766543 1125677899888875 899999987655
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+.+....-...+++++.+.|+|||..++
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 5555556678899999999999998764
No 257
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0016 Score=57.79 Aligned_cols=112 Identities=23% Similarity=0.328 Sum_probs=79.7
Q ss_pred HHHHHHHHhcc---CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 98 ETYRAAIMQNQ---SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 98 ~~~~~~i~~~~---~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
..+..+|..-+ ...+|.+||=+|+.+|.....++.- |...|+|||.| .........+++. +++--+.+|+..
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence 35566666543 4678999999999999998888886 66689999999 6655554444432 357777788765
Q ss_pred ccC----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEI----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
-.. -+.+|+|+... -.....+-+...+..+||+||.+++.
T Consensus 136 P~~Y~~~Ve~VDviy~DV-----AQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDV-----AQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cHHhhhhcccccEEEEec-----CCchHHHHHHHHHHHhcccCCeEEEE
Confidence 321 27799999864 12334566778889999999976643
No 258
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.28 E-value=0.002 Score=63.19 Aligned_cols=115 Identities=13% Similarity=0.162 Sum_probs=85.2
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc---CCCcee
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---IDEEVD 180 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~D 180 (428)
.+...+|.+|||+.+..|.=+.++|.. +-..|+|.|.+ +-+...+.++.+.|..+ ..+.+.|..+++ ++++||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCcccc
Confidence 345678999999999999877776664 45579999999 88888899999999876 666777776554 235899
Q ss_pred EEEEecchhh--hc-----------------chhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 181 VIISEWMGYM--LL-----------------YESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 181 lVvs~~~~~~--l~-----------------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
-|+.....+. +. +.....++|..+..++++||+|+-+++++.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 9987543222 11 112245677778899999999998887654
No 259
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.17 E-value=0.0016 Score=64.72 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEccccccc--CCCceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVEDVE--IDEEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~l~--~~~~~DlVvs~ 185 (428)
.+.+|||.=+|+|.=++..++. +..+|++-|+| +.++..+++++.|++.+ ++++.+.|+..+- ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3469999999999988887776 67799999999 99999999999999988 7999999988764 45899999987
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++| .+..+++.+.+.++.||.|.++
T Consensus 129 PfG-------Sp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 129 PFG-------SPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp -SS---------HHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-------CccHhHHHHHHHhhcCCEEEEe
Confidence 744 3566778888889999999865
No 260
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.15 E-value=0.0025 Score=53.73 Aligned_cols=80 Identities=26% Similarity=0.353 Sum_probs=57.6
Q ss_pred eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--CC-ceeEEEEecchhhhcch-------hhHHHHHHHHh
Q 014247 137 RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--DE-EVDVIISEWMGYMLLYE-------SMLGSVITARD 205 (428)
Q Consensus 137 ~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~-~~DlVvs~~~~~~l~~~-------~~~~~~l~~~~ 205 (428)
+|+|+|+- ..++.+++++++.++.+++++++.+-+++.. +. ++|+++-++ ||.-... ..--.+++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999999 9999999999999998899999988777653 34 899999875 4332221 12345577778
Q ss_pred cccccCeEEEcc
Q 014247 206 RWLKRGGLILPS 217 (428)
Q Consensus 206 ~~LkpgG~lv~~ 217 (428)
++|+|||++++.
T Consensus 80 ~lL~~gG~i~iv 91 (140)
T PF06962_consen 80 ELLKPGGIITIV 91 (140)
T ss_dssp HHEEEEEEEEEE
T ss_pred HhhccCCEEEEE
Confidence 899999998863
No 261
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0017 Score=54.45 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=75.8
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
..+...+..+.+|+|.|.|...+.+++.|....+|+|++ -++..++-..-+.+......|...|+-+.++. .|.-|+.
T Consensus 66 Sll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-dy~~vvi 144 (199)
T KOG4058|consen 66 SLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-DYRNVVI 144 (199)
T ss_pred HHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-ccceEEE
Confidence 344445556899999999999999999997789999999 67777777777788888899999998877663 3443332
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+..+..+..+-.++..-|..+..++-+
T Consensus 145 ------Fgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 145 ------FGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred ------eehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 122334455555666567777777743
No 262
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.03 E-value=0.004 Score=58.33 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=69.8
Q ss_pred HHHHHHHHHhccCCC-CCCEEEEEcCCCc--HHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc
Q 014247 97 TETYRAAIMQNQSFI-EGKVVVDVGCGTG--ILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV 170 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~-~~~~VLDiGcGtG--~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 170 (428)
++.|.....+.+... .=...||||||-- ...-.+|+. ...+|+-+|.+ -.+..++..+..+.- .+..++++|+
T Consensus 52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~ 130 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--T
T ss_pred HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCC
Confidence 334444444443323 3358999999942 344555553 44599999999 566668877766532 3489999998
Q ss_pred ccc-------------cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 171 EDV-------------EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 171 ~~l-------------~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
.+. ++..++-+++... .+++....++..+++.+...|.||..|+++..+
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCHHHHhcCHHHHhcCCCCCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 873 2235555665543 345555567999999999999999999987653
No 263
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.79 E-value=0.043 Score=50.47 Aligned_cols=106 Identities=22% Similarity=0.200 Sum_probs=63.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-cCC--C
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-EID--E 177 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~~~--~ 177 (428)
.+........|++||-+|-+- ..|+.+|.. ..++|+.+|++ .+++...+.+++.|+. |+.+..|+++- |.. +
T Consensus 35 ~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~ 111 (243)
T PF01861_consen 35 ALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRG 111 (243)
T ss_dssp HHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS
T ss_pred HHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhc
Confidence 333344457899999999776 455555543 46799999999 9999999999999885 99999998873 332 8
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCe-EEE
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGG-LIL 215 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~lv 215 (428)
+||++++++.-. ..-+..++.+....||..| ..+
T Consensus 112 ~fD~f~TDPPyT----~~G~~LFlsRgi~~Lk~~g~~gy 146 (243)
T PF01861_consen 112 KFDVFFTDPPYT----PEGLKLFLSRGIEALKGEGCAGY 146 (243)
T ss_dssp -BSEEEE---SS----HHHHHHHHHHHHHTB-STT-EEE
T ss_pred CCCEEEeCCCCC----HHHHHHHHHHHHHHhCCCCceEE
Confidence 999999987321 1336777888888887655 443
No 264
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.77 E-value=0.0076 Score=57.89 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=66.5
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--- 175 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--- 175 (428)
.+.+.+.+...++..++|.-||.|..+..+++. +..+|+|+|.+ .++..|++.+... .+++++++++..++..
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHH
Confidence 344455566678889999999999999999886 34699999999 8999998887653 4679999999887531
Q ss_pred --C-CceeEEEEec
Q 014247 176 --D-EEVDVIISEW 186 (428)
Q Consensus 176 --~-~~~DlVvs~~ 186 (428)
. .++|.|+.++
T Consensus 87 ~~~~~~vDgIl~DL 100 (305)
T TIGR00006 87 ELLVTKIDGILVDL 100 (305)
T ss_pred hcCCCcccEEEEec
Confidence 1 5799999875
No 265
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.77 E-value=0.0045 Score=55.71 Aligned_cols=120 Identities=16% Similarity=0.249 Sum_probs=64.0
Q ss_pred hccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-----CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcE
Q 014247 90 MIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-----GAKRVYAVDAS-DIAVQANEVVKANNLTDKV 163 (428)
Q Consensus 90 ~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-----g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v 163 (428)
+++.+...-.|.+.|-+. +.+.|+++|.-.|.-+.+.|.. +..+|+|||++ +.... +.++...+..+|
T Consensus 14 i~q~P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI 87 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRI 87 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTE
T ss_pred hhcCHHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCce
Confidence 444455555677777664 5689999999999877766642 34699999996 43322 223334556789
Q ss_pred EEEEcccccccC---------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 164 IVLHGRVEDVEI---------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 164 ~~~~~d~~~l~~---------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+++++|..+... .....+|+-.. ...++. .-..|+....++++|+.+|+.+-
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs---~H~~~h-vl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDS---SHTHEH-VLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS-------SS-HHHHHHHHHHT--TT-EEEETSH
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECC---CccHHH-HHHHHHHhCccCCCCCEEEEEec
Confidence 999999876421 13344666433 323333 44556668899999999987654
No 266
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.77 E-value=0.0016 Score=65.44 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-cc-
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VE- 174 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~- 174 (428)
..|...+...+....-..|+|..+|.|.++..|.... |+.+... ....-....+-+.|+-. +.+ |..+ ++
T Consensus 351 ~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGLIG---~yh-DWCE~fsT 423 (506)
T PF03141_consen 351 SHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGLIG---VYH-DWCEAFST 423 (506)
T ss_pred HHHHHhhcccccccceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhcccch---hcc-chhhccCC
Confidence 3444333323333334589999999999999888764 3332222 10000112233344422 221 3222 22
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.+.+||+|.+..+...+...-++..++-++.|+|+|||.+++.+
T Consensus 424 YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 35899999998765555556668999999999999999999754
No 267
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.0068 Score=53.10 Aligned_cols=96 Identities=22% Similarity=0.224 Sum_probs=61.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEc-cccccc---------CCC
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHG-RVEDVE---------IDE 177 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l~---------~~~ 177 (428)
..++.+|||+||..|.++..+.+. ....|.|||+-... .. ..+.++++ |+++-. ...
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PP-EGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CC-CCcccccccccCCHHHHHHHHHhCCCC
Confidence 367999999999999999988886 34589999986321 11 12566665 665421 237
Q ss_pred ceeEEEEecch-----hhhcchhhH---HHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMG-----YMLLYESML---GSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~-----~~l~~~~~~---~~~l~~~~~~LkpgG~lv~ 216 (428)
++|+|+|.... ....|.... .+++.-....++|+|.++.
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc 182 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVC 182 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEE
Confidence 89999997521 122222222 2234444567889999884
No 268
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.71 E-value=0.006 Score=56.13 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=49.8
Q ss_pred HHHhccCCCCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHH---HHHHHHHCCCC-----CcEEEEEcccc
Q 014247 103 AIMQNQSFIEG--KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQ---ANEVVKANNLT-----DKVIVLHGRVE 171 (428)
Q Consensus 103 ~i~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~---a~~~~~~~~~~-----~~v~~~~~d~~ 171 (428)
.+.+.....++ .+|||.-+|-|.-++.+|..|+ +|+++|.| -+... +.++....... .+++++++|..
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 44455554555 3999999999999999998888 79999999 43333 33344333222 47999999987
Q ss_pred cc-cC-CCceeEEEEecc
Q 014247 172 DV-EI-DEEVDVIISEWM 187 (428)
Q Consensus 172 ~l-~~-~~~~DlVvs~~~ 187 (428)
++ .. ..+||+|+..+|
T Consensus 143 ~~L~~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 143 EYLRQPDNSFDVVYFDPM 160 (234)
T ss_dssp CHCCCHSS--SEEEE--S
T ss_pred HHHhhcCCCCCEEEECCC
Confidence 74 22 389999999885
No 269
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0031 Score=60.36 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=68.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccc----ccCC
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVED----VEID 176 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~----l~~~ 176 (428)
.+......+..++|||+|.|.|.-...+-.. -.+.++.++.|+.+...-.-+.+|-...+......|+.. ++..
T Consensus 104 ~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 104 ELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred HHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc
Confidence 3344445667789999999998765544333 245788889886666555555555333333333334332 2333
Q ss_pred CceeEEEEecchhhhcch---hhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYE---SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~---~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..|++++. .+-+.+. ..+...++.+..++.|||.+++..
T Consensus 184 d~ytl~i~---~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 184 DLYTLAIV---LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred ceeehhhh---hhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 66777765 2233222 224457888889999999888643
No 270
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.68 E-value=0.00068 Score=63.45 Aligned_cols=76 Identities=25% Similarity=0.351 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCcHHHH-HHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSI-FCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~-~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
-.+..|.|+-+|.|.+++ .+..+|++.|+++|.+ ..++..++.++.|+..++..++.+|-+...+....|-|..-+
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL 270 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL 270 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc
Confidence 345899999999999999 8888999999999999 889999999999999888899999988887778889888543
No 271
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.37 E-value=0.023 Score=52.58 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
.+..+|+|||||.=.+++...... ...++|+|++ .+++.....+...+.. .++...|...-+.....|+.+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHTTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCCCCCcchhhH
Confidence 347899999999998888766542 2389999999 9999988887777764 5566667766666688999986
No 272
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.36 E-value=0.019 Score=53.34 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHH-----CCCCCcEEEEEcccccccC----CCc-eeE
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKA-----NNLTDKVIVLHGRVEDVEI----DEE-VDV 181 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~-----~~~~~~v~~~~~d~~~l~~----~~~-~Dl 181 (428)
....||++|+|+|..++.+|.....+|.-.|..........+... +.+...+.+...+..+... ... +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 456899999999999988888655589999988444443333222 2333345554444333211 134 899
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|++.- ++..+...+.++..+..+|..+|.+++
T Consensus 166 ilasD---vvy~~~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 166 ILASD---VVYEEESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred EEEee---eeecCCcchhHHHHHHHHHhcCCeEEE
Confidence 99854 555666678888888888988885543
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.09 E-value=0.035 Score=54.04 Aligned_cols=93 Identities=27% Similarity=0.332 Sum_probs=60.4
Q ss_pred cCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-ccccc-CCCceeEE
Q 014247 108 QSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-VEDVE-IDEEVDVI 182 (428)
Q Consensus 108 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~~~l~-~~~~~DlV 182 (428)
....+|++|+-+|+| .|.++..+|++ |+ +|+++|.+ +-.+.|++.-. -.++... ..... ..+.||+|
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEE
Confidence 345789999999998 23567777774 75 99999999 87877776521 2333322 11111 11459999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+... . ...+....+.|++||++++-.
T Consensus 234 i~tv-----~-----~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 234 IDTV-----G-----PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EECC-----C-----hhhHHHHHHHHhcCCEEEEEC
Confidence 9732 1 233455567899999988543
No 274
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.08 E-value=0.0047 Score=57.91 Aligned_cols=105 Identities=22% Similarity=0.278 Sum_probs=61.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHH-HHHH------HH--HCCCCCcEEEEEcccccccC--CC
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQ-ANEV------VK--ANNLTDKVIVLHGRVEDVEI--DE 177 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~-a~~~------~~--~~~~~~~v~~~~~d~~~l~~--~~ 177 (428)
...+++|||+|||.|.....+...|+..+...|.| ..++. ..-+ +. .+....-..+.+.+..++.+ .+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 36789999999999999999999887789999998 65521 1000 00 11111112223331112111 13
Q ss_pred --ceeEEEEecchhhhcchhhHHHH-HHHHhcccccCeEEEcc
Q 014247 178 --EVDVIISEWMGYMLLYESMLGSV-ITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 --~~DlVvs~~~~~~l~~~~~~~~~-l~~~~~~LkpgG~lv~~ 217 (428)
.||+|.+.-. +........+ ......+++++|+++..
T Consensus 194 ~~~ydlIlsSet---iy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSET---IYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhh---hhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 7888887542 2233333333 55566778888887643
No 275
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.07 E-value=0.01 Score=56.88 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=61.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHH-------HHHHHHHCCCC-CcEEEEEcccccccCC--C
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQ-------ANEVVKANNLT-DKVIVLHGRVEDVEID--E 177 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~-------a~~~~~~~~~~-~~v~~~~~d~~~l~~~--~ 177 (428)
...+|+.|+|-=-|||.+...+|..|+ .|+|.|++ .++.. .+.+++..|.. .-+.++.+|..+-+.. .
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 357899999999999999999999988 89999999 77662 24466666643 3367788888775543 7
Q ss_pred ceeEEEEecc
Q 014247 178 EVDVIISEWM 187 (428)
Q Consensus 178 ~~DlVvs~~~ 187 (428)
.||.|+|.+.
T Consensus 284 ~fDaIvcDPP 293 (421)
T KOG2671|consen 284 KFDAIVCDPP 293 (421)
T ss_pred eeeEEEeCCC
Confidence 8999999873
No 276
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.93 E-value=0.013 Score=52.99 Aligned_cols=97 Identities=26% Similarity=0.336 Sum_probs=66.0
Q ss_pred CCCCC-CEEEEEcCCCcHHHHHHHHcC--------C--CeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC--
Q 014247 109 SFIEG-KVVVDVGCGTGILSIFCAQAG--------A--KRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-- 175 (428)
Q Consensus 109 ~~~~~-~~VLDiGcGtG~ls~~la~~g--------~--~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-- 175 (428)
..+.| .+|+|+.+..|.++..+++.- . +++++||+.+|+- +. .|.-+++|++....
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I~-GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------IE-GVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------cC-ceEEeecccCCHhHHH
Confidence 33444 589999999999999998751 1 1499999987752 22 37788899887532
Q ss_pred ------C-CceeEEEEecchh--hhcc------hhhHHHHHHHHhcccccCeEEEc
Q 014247 176 ------D-EEVDVIISEWMGY--MLLY------ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 ------~-~~~DlVvs~~~~~--~l~~------~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
. ++.|+|+|..... .++. ...+-.+|.-...+|||||.++-
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 2 6899999965211 1111 11244556666789999999983
No 277
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.92 E-value=0.07 Score=48.01 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHC-----------------------------
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKAN----------------------------- 157 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~----------------------------- 157 (428)
..+-++.|-.||.|.+.-.+.-. ..+.|+|-|++ .+++.|++++.-.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 44569999999999876554432 34589999999 9999998886321
Q ss_pred ------------CCCCcEEEEEccccc------ccCCCceeEEEEec-chhhhcchh-----hHHHHHHHHhcccccCeE
Q 014247 158 ------------NLTDKVIVLHGRVED------VEIDEEVDVIISEW-MGYMLLYES-----MLGSVITARDRWLKRGGL 213 (428)
Q Consensus 158 ------------~~~~~v~~~~~d~~~------l~~~~~~DlVvs~~-~~~~l~~~~-----~~~~~l~~~~~~LkpgG~ 213 (428)
|-..-..+.+.|+.+ .+.....|+|+... .+.+..|+. -...+|..+..+|-.+++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 122236788888876 23335579999976 345555554 378899999999955556
Q ss_pred EEc
Q 014247 214 ILP 216 (428)
Q Consensus 214 lv~ 216 (428)
+++
T Consensus 210 V~v 212 (246)
T PF11599_consen 210 VAV 212 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 278
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.72 E-value=0.049 Score=56.23 Aligned_cols=96 Identities=24% Similarity=0.306 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-----------cc-
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-----------VE- 174 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------l~- 174 (428)
..++.+||-+|||. |..+..+|+. |+ +|+++|.+ +-++.+++. |. +++..+..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhhcch
Confidence 35789999999996 6777777776 88 79999999 666665542 22 211111100 00
Q ss_pred ----------CC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ----------ID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ----------~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+ ..+|+|+... .......+..+.++..+.+||||+++.-
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIeta---g~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTA---LIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECC---CCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 01 4699999743 2222222333357888899999988743
No 279
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.67 E-value=0.15 Score=48.13 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCC--CCcEEEEEccccc
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNL--TDKVIVLHGRVED 172 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~--~~~v~~~~~d~~~ 172 (428)
.|+..+-+.+.+.+... ...|+.+|||-=.-...+......+++=+|..++++.-++.+.+.+. ..+.+++..|+.+
T Consensus 65 ~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 56666667776665432 34699999998666665543211256566665677666667765442 4568899999862
Q ss_pred -c----c---C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhh------h
Q 014247 173 -V----E---I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI------D 237 (428)
Q Consensus 173 -l----~---~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~------~ 237 (428)
+ . + +...-+++++.+..++ .+.....+++.+.+...||+.+++..... +............. .
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 221 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFDYVRP-LDGEWRAGMRAPVYHAARGVD 221 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEEeccc-cchhHHHHHHHHHHHhhhccc
Confidence 1 0 1 1345588888765444 44558889999988888999988764332 10000000000000 0
Q ss_pred hhhccCCCCcchhHHHHHhcCCCCce
Q 014247 238 FWRNVYGIDMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~~Gf~~~~ 263 (428)
.-.-.++++..++..++.+.||....
T Consensus 222 ~~~~~~~~~~~~~~~~l~~~Gw~~~~ 247 (260)
T TIGR00027 222 GSGLVFGIDRADVAEWLAERGWRASE 247 (260)
T ss_pred ccccccCCChhhHHHHHHHCCCeeec
Confidence 00114677888999999999998643
No 280
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.67 E-value=0.054 Score=52.68 Aligned_cols=97 Identities=28% Similarity=0.281 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEecch
Q 014247 113 GKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEWMG 188 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~~~ 188 (428)
..+|||.=+|+|.=+...|.. +..+|+.-|+| ..++.++++++.|...+ ..+++.|+..+-.. ..||+|=.+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCCC
Confidence 789999999999999888876 55589999999 99999999999984444 67777887765433 789999877644
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. +..+++++.+.++.||.+.++
T Consensus 132 S-------PaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 132 S-------PAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred C-------CchHHHHHHHHhhcCCEEEEE
Confidence 3 555677777778889988765
No 281
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.63 E-value=0.036 Score=49.36 Aligned_cols=103 Identities=14% Similarity=0.224 Sum_probs=60.7
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC------CCCcEEEEEcccccccCC----CceeE
Q 014247 114 KVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN------LTDKVIVLHGRVEDVEID----EEVDV 181 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~------~~~~v~~~~~d~~~l~~~----~~~Dl 181 (428)
-.+.|||||-|.+.+.++.. .-.-+.|+|+- ...+..+++++... .-.++.+........... ++.+-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 46899999999999999987 34478899999 88888887776543 223356665554432211 11111
Q ss_pred EEEecchhhhc-----chhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLL-----YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~-----~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+.....-.+- +.-.-..++.+..-+|++||.++.
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 11100000000 000124456677778999998874
No 282
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.61 E-value=0.037 Score=50.52 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=66.8
Q ss_pred HHHHHHHh---ccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 99 TYRAAIMQ---NQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 99 ~~~~~i~~---~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
.+...|.- .+...++.+||-+|+++|.....++.. | -.-||++|.| ..-......+++ -. +|--+.-|++.
T Consensus 140 KLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--Rt-NiiPIiEDArh 216 (317)
T KOG1596|consen 140 KLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RT-NIIPIIEDARH 216 (317)
T ss_pred HHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cC-CceeeeccCCC
Confidence 34444432 456689999999999999987777765 3 3379999998 432222222211 12 34445456654
Q ss_pred ccC----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEI----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
-.. -.-+|+|+++. .......-+.-....+||+||-++++
T Consensus 217 P~KYRmlVgmVDvIFaDv-----aqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADV-----AQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred chheeeeeeeEEEEeccC-----CCchhhhhhhhhhhhhhccCCeEEEE
Confidence 211 14678888754 11222333344567899999988865
No 283
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.50 E-value=0.0061 Score=61.08 Aligned_cols=101 Identities=21% Similarity=0.228 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----CCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----DEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~DlV 182 (428)
.++.+|||.=|++|+-++..|+. |..+|++-|.+ ..+...+++++.|+.++.++..+.|+..+-. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 35678999999999999888886 77899999999 8888889999999998889999999776422 2789999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
=.++.| ....+|+.+.+.++.||+|.++.
T Consensus 188 DLDPyG-------s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDPYG-------SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecCCCC-------CccHHHHHHHHHhhcCCEEEEEe
Confidence 876633 25567777778889999998764
No 284
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.45 E-value=0.028 Score=55.60 Aligned_cols=94 Identities=30% Similarity=0.330 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cc----ccccCCCceeEE
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RV----EDVEIDEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~----~~l~~~~~~DlV 182 (428)
.++.+|+-+|||. |+++..+++. |+.+|+++|.+ .-++.|++.... +.+..... +. ..+.....+|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEE
Confidence 4455999999997 8887777776 88999999999 778777764321 11111111 11 111212469999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+-.. + ....+..+.++++|||.+++-
T Consensus 243 ie~~-G--------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 243 IEAV-G--------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EECC-C--------CHHHHHHHHHHhcCCCEEEEE
Confidence 8632 2 334667777889999988753
No 285
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.33 E-value=0.03 Score=56.05 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=64.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-c----ccccCCCce
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-V----EDVEIDEEV 179 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~----~~l~~~~~~ 179 (428)
....++.+||.+|||. |.++..+|++ |..+|++++.+ +..+.+++.. +. ..+.....+ . .++.....+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4456788999999987 7788888876 66579999998 7777666541 11 112111111 1 112222469
Q ss_pred eEEEEecch------------hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 180 DVIISEWMG------------YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 180 DlVvs~~~~------------~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+|+...-+ +.+....+....+..+.+.|+++|.++..
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 999874210 01111223355677888899999988754
No 286
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.32 E-value=0.096 Score=50.12 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=64.0
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-c-cccc-------cCC
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-R-VEDV-------EID 176 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d-~~~l-------~~~ 176 (428)
....|.+||-+|+|. |.++...|++ |+++|+.+|++ +-++.|++ + |... +..... + ..++ .-.
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEKALGK 240 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHhhccc
Confidence 457899999999995 8888989987 99999999999 88888877 3 2221 111111 1 1111 011
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+|+.+... . .+..++.....+++||.+++..
T Consensus 241 ~~~d~~~dCs---G------~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 241 KQPDVTFDCS---G------AEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred cCCCeEEEcc---C------chHHHHHHHHHhccCCEEEEec
Confidence 4588888643 1 3344555567789999977543
No 287
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.19 E-value=0.14 Score=53.04 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=78.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C----CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G----AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g----~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
+...+.|.+.+...+..+|+|-.||+|.+...+++. + ...++|.|++ .....|+.++--++....+....+|..
T Consensus 172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl 251 (489)
T COG0286 172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL 251 (489)
T ss_pred HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence 345566666665556779999999999887766664 2 1468999999 888889888887777543555555543
Q ss_pred ccc------CCCceeEEEEecchhhhcch----------------------hhHHHHHHHHhcccccCeE
Q 014247 172 DVE------IDEEVDVIISEWMGYMLLYE----------------------SMLGSVITARDRWLKRGGL 213 (428)
Q Consensus 172 ~l~------~~~~~DlVvs~~~~~~l~~~----------------------~~~~~~l~~~~~~LkpgG~ 213 (428)
.-+ ..++||.|++++..+.-.+. .....+++.+...|+|||+
T Consensus 252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~ 321 (489)
T COG0286 252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGR 321 (489)
T ss_pred cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCce
Confidence 322 12679999998743211111 1125667778888888763
No 288
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.01 E-value=0.045 Score=52.19 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=50.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---CCceeEEEEec
Q 014247 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DEEVDVIISEW 186 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~~~DlVvs~~ 186 (428)
+|+|+-||.|.++.-+.++|++.|.++|++ ..++..+.+.. + .++.+|+.++.. ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEeCC
Confidence 689999999999999999999889999999 66655555432 1 256778877653 35799999865
No 289
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.78 E-value=0.082 Score=49.85 Aligned_cols=109 Identities=16% Similarity=0.083 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHH--CCC-CCcEEEEEcccccc---cCCCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKA--NNL-TDKVIVLHGRVEDV---EIDEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~l---~~~~~~DlV 182 (428)
...++||-||.|.|......+++ ....+.-+|+. ..++..++.... .+. ..+|.+.-||-..+ -..++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45689999999999998888887 45588999999 777776665443 223 34688888885543 124899999
Q ss_pred EEecchhhhcchh-hHHHHHHHHhcccccCeEEEccCC
Q 014247 183 ISEWMGYMLLYES-MLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 183 vs~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+.+.-.-...... -...+..-+.+.||+||+++....
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 9865221222221 245667778899999999886543
No 290
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.62 E-value=0.31 Score=47.56 Aligned_cols=113 Identities=18% Similarity=0.101 Sum_probs=70.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCC---C--eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-------
Q 014247 108 QSFIEGKVVVDVGCGTGILSIFCAQAGA---K--RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE------- 174 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGtG~ls~~la~~g~---~--~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~------- 174 (428)
+...++.+|||+.+..|.=+..+.++.. . .|++=|.+ .-+...+..+..- -...+.+...|+...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-PSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-CCcceeeecccceeccccccccC
Confidence 4567899999999999988877766522 2 78999988 5444444444222 2223444444443321
Q ss_pred ---CCCceeEEEEecc--hhh-hcch-----------------hhHHHHHHHHhcccccCeEEEccCCee
Q 014247 175 ---IDEEVDVIISEWM--GYM-LLYE-----------------SMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 175 ---~~~~~DlVvs~~~--~~~-l~~~-----------------~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
....||-|++... +.. +... ..--.+|.+-.++||+||.+|-+++++
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 1167999998642 111 1000 012345777789999999999888764
No 291
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.47 E-value=0.062 Score=42.87 Aligned_cols=32 Identities=31% Similarity=0.577 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s 144 (428)
+.....|||||+|.+...|.+.|. .=+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 445799999999999999999988 67788864
No 292
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.39 E-value=0.16 Score=49.81 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEe
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISE 185 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~ 185 (428)
..++.+||-.|||. |.++..+|++ |+++|+++|.+ +-.+.+++ .|...-+..-..++.++.. .+.+|+|+..
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~ 242 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEV 242 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEEC
Confidence 35788999999863 4556666665 77789999998 66665544 2322111111112222111 1458999863
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. + . ...+....++|++||+++..
T Consensus 243 ~-G----~----~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 243 S-G----H----PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred C-C----C----HHHHHHHHHHhhcCCEEEEE
Confidence 2 1 1 22345566789999998854
No 293
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.05 E-value=0.56 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.5
Q ss_pred hHHHHHHHHhcccccCeEEEcc
Q 014247 196 MLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 196 ~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+..+|+...+-|.|||++++.
T Consensus 215 D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 215 DLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred HHHHHHHHHHHHhccCcEEEEE
Confidence 4667788888999999999865
No 294
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.95 E-value=0.51 Score=41.31 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=74.8
Q ss_pred EEcCCCcHHHHHHHHc-C-CCeEEEEeCh---HHHHH---HHHHHHHCCCCCcEEEEEcccccccC-----CCceeEEEE
Q 014247 118 DVGCGTGILSIFCAQA-G-AKRVYAVDAS---DIAVQ---ANEVVKANNLTDKVIVLHGRVEDVEI-----DEEVDVIIS 184 (428)
Q Consensus 118 DiGcGtG~ls~~la~~-g-~~~V~giD~s---~~~~~---a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~DlVvs 184 (428)
=||-|.=.++..+++. + ...++|.-.. ++.+. +..+++.-.-.+.......|++++.. ..+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 4666776777777776 4 5577766554 23222 22333322111112334456666532 278999998
Q ss_pred ecchhh----------hcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHH
Q 014247 185 EWMGYM----------LLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLA 254 (428)
Q Consensus 185 ~~~~~~----------l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 254 (428)
+..... -.+...+..+++.+..+|+++|.+.++...- .+++.-.+..+.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~---------------------~py~~W~i~~lA 140 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG---------------------QPYDSWNIEELA 140 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC---------------------CCCccccHHHHH
Confidence 763222 1223457888999999999999998753321 012233455677
Q ss_pred HhcCCCCceEEeec
Q 014247 255 KQCAFEEPSVETIT 268 (428)
Q Consensus 255 ~~~Gf~~~~~~~~~ 268 (428)
.++||.......++
T Consensus 141 ~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 141 AEAGLVLVRKVPFD 154 (166)
T ss_pred HhcCCEEEEEecCC
Confidence 78888765554443
No 295
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.87 E-value=0.41 Score=45.57 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=67.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI- 175 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~- 175 (428)
+.+.+...+...++...+|.--|.|..+..+.+.. .++++|+|.+ ..++.|++++...+ +++.++++.+.++..
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEA 88 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHH
Confidence 34455566777888999999999999999998874 3579999999 89999999887654 689999998877532
Q ss_pred -----CCceeEEEEec
Q 014247 176 -----DEEVDVIISEW 186 (428)
Q Consensus 176 -----~~~~DlVvs~~ 186 (428)
.+++|-|+..+
T Consensus 89 l~~~~i~~vDGiL~DL 104 (314)
T COG0275 89 LKELGIGKVDGILLDL 104 (314)
T ss_pred HHhcCCCceeEEEEec
Confidence 16888888764
No 296
>PRK11524 putative methyltransferase; Provisional
Probab=93.63 E-value=0.25 Score=47.29 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=46.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA 156 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~ 156 (428)
...+.+.+.+... .+|..|||-=||+|..+..+.+.|- +.+|+|++ +.++.|++++..
T Consensus 194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 3455555555443 7899999999999999998888865 89999999 999999998754
No 297
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.60 E-value=0.8 Score=42.80 Aligned_cols=122 Identities=24% Similarity=0.241 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH---c-C--CCeEEEEeCh-H---------------------
Q 014247 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQ---A-G--AKRVYAVDAS-D--------------------- 145 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~---~-g--~~~V~giD~s-~--------------------- 145 (428)
..|...+..++...+...-...|+++||-.|..+..++. . + .+++++.|.= .
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 355566777777765434445899999999987765533 1 2 3478888731 1
Q ss_pred -----HHHHHHHHHHHCCC-CCcEEEEEcccccccCC---CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 146 -----IAVQANEVVKANNL-TDKVIVLHGRVEDVEID---EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 146 -----~~~~a~~~~~~~~~-~~~v~~~~~d~~~l~~~---~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+..++++...++ .+++.++.|.+.+.-.. +++-++.... =.++ ....+|..++..|.|||++++
T Consensus 136 ~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~----DlYe-sT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC----DLYE-STKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHH-HHHHHHHHHGGGEEEEEEEEE
T ss_pred cccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec----cchH-HHHHHHHHHHhhcCCCeEEEE
Confidence 12222233333333 45799999998763221 4444444321 1122 367788999999999999998
Q ss_pred cCCe
Q 014247 217 SYAT 220 (428)
Q Consensus 217 ~~~~ 220 (428)
.+..
T Consensus 211 DDY~ 214 (248)
T PF05711_consen 211 DDYG 214 (248)
T ss_dssp SSTT
T ss_pred eCCC
Confidence 7643
No 298
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.54 E-value=0.65 Score=45.60 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc----------CC-------CeEEEEeCh--HHHHHHHHHHHH----CCCCC-cEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA----------GA-------KRVYAVDAS--DIAVQANEVVKA----NNLTD-KVIVL 166 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~----------g~-------~~V~giD~s--~~~~~a~~~~~~----~~~~~-~v~~~ 166 (428)
...-+|+|+||.+|..++.+... .. -+|+--|.- ..-...+..-.. ....+ -+.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 45569999999999988776542 01 167777764 322222111111 00111 12223
Q ss_pred Eccccc-ccCCCceeEEEEecchhhhc---------------------c---------------hhhHHHHHHHHhcccc
Q 014247 167 HGRVED-VEIDEEVDVIISEWMGYMLL---------------------Y---------------ESMLGSVITARDRWLK 209 (428)
Q Consensus 167 ~~d~~~-l~~~~~~DlVvs~~~~~~l~---------------------~---------------~~~~~~~l~~~~~~Lk 209 (428)
-+.+.+ +-++++.|+++|..-.|.+. . ..|+..+|+...+-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 344433 22238899999854111110 0 1356778999999999
Q ss_pred cCeEEEcc
Q 014247 210 RGGLILPS 217 (428)
Q Consensus 210 pgG~lv~~ 217 (428)
|||++++.
T Consensus 175 ~GG~mvl~ 182 (334)
T PF03492_consen 175 PGGRMVLT 182 (334)
T ss_dssp EEEEEEEE
T ss_pred cCcEEEEE
Confidence 99999865
No 299
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.27 E-value=0.3 Score=48.00 Aligned_cols=110 Identities=23% Similarity=0.229 Sum_probs=71.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHH-------HHCCC-CCcEEEEEcccccc
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVV-------KANNL-TDKVIVLHGRVEDV 173 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~-------~~~~~-~~~v~~~~~d~~~l 173 (428)
+.+.+...++....|+|.|.|.+...+|.. ++++-+|+++. .....|..+. +..|. .+.++.+++++.+-
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~ 263 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP 263 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence 344456788999999999999988777765 67778888876 3333332221 12232 34588888887653
Q ss_pred cC----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 EI----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 ~~----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. ....++|+++. +..... +..=+.++..-+++|-+++-.
T Consensus 264 ~~v~eI~~eatvi~vNN---~~Fdp~-L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 264 KRVTEIQTEATVIFVNN---VAFDPE-LKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred HHHHHHhhcceEEEEec---ccCCHH-HHHhhHHHHhhCCCcceEecc
Confidence 22 26789999877 333222 333344666778999988744
No 300
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.18 E-value=0.24 Score=47.72 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=57.6
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---- 175 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---- 175 (428)
+.+.+.+...++..++|.--|.|..+..+.+. +..+|+|+|.+ .++..|++++.. ..+++.++++++.++..
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~--~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK--FDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC--CCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh--ccceEEEEeccHHHHHHHHHH
Confidence 34445555678889999999999999999986 44799999999 888888776543 35789999999887631
Q ss_pred ---CCceeEEEEec
Q 014247 176 ---DEEVDVIISEW 186 (428)
Q Consensus 176 ---~~~~DlVvs~~ 186 (428)
..++|-|+..+
T Consensus 88 ~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 88 LNGINKVDGILFDL 101 (310)
T ss_dssp TTTTS-EEEEEEE-
T ss_pred ccCCCccCEEEEcc
Confidence 25899999865
No 301
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.14 E-value=0.057 Score=46.34 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHH--HHHHHHHHHHCCCCCcE-EEEEcccc-cc-cCCCceeEEEEec-
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDI--AVQANEVVKANNLTDKV-IVLHGRVE-DV-EIDEEVDVIISEW- 186 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~--~~~a~~~~~~~~~~~~v-~~~~~d~~-~l-~~~~~~DlVvs~~- 186 (428)
++++|-+|...=..=..+.+.|+++|..||.+.. -+..+ +++ .+...|.. ++ ...++||.+.|-.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 5788999999866666666779999999998732 11111 111 12222221 11 1237899988733
Q ss_pred chh--------hhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 187 MGY--------MLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~--------~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.+ -+....++ ..+.++.++|||||.+++..
T Consensus 73 iEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hccccccccCCCCCccccH-HHHHHHHHhhccCCeEEEEe
Confidence 111 11222333 34667889999999999753
No 302
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.11 E-value=1.4 Score=39.88 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=66.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCc----HHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc-c
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTG----ILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE-D 172 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG----~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~ 172 (428)
..+.|..+..-...+.++++.|+-| .+++.+|. +-..++++|-.. +-....++.+...++.+.++|+.++.. +
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~ 108 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE 108 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH
Confidence 3455555555556678999966543 23333333 223378888888 666677777777788877899998843 3
Q ss_pred ccC-CCceeEEEEecchhhhcchhhHH-HHHHHHhcccccCeEEEc
Q 014247 173 VEI-DEEVDVIISEWMGYMLLYESMLG-SVITARDRWLKRGGLILP 216 (428)
Q Consensus 173 l~~-~~~~DlVvs~~~~~~l~~~~~~~-~~l~~~~~~LkpgG~lv~ 216 (428)
+-. -..+|.++.+. - ..+.. .+|+.+. +.|.|.++.
T Consensus 109 ~~~~~~~iDF~vVDc---~---~~d~~~~vl~~~~--~~~~GaVVV 146 (218)
T PF07279_consen 109 VMPGLKGIDFVVVDC---K---REDFAARVLRAAK--LSPRGAVVV 146 (218)
T ss_pred HHhhccCCCEEEEeC---C---chhHHHHHHHHhc--cCCCceEEE
Confidence 322 26799998754 1 22333 6666543 555565554
No 303
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.76 E-value=0.48 Score=43.23 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCcHH-HHH-HHHcCCCeEEEEeCh-HHHHHHHHHHHHC-CCCCcEEEEEcccccccC------CCceeE
Q 014247 112 EGKVVVDVGCGTGIL-SIF-CAQAGAKRVYAVDAS-DIAVQANEVVKAN-NLTDKVIVLHGRVEDVEI------DEEVDV 181 (428)
Q Consensus 112 ~~~~VLDiGcGtG~l-s~~-la~~g~~~V~giD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~l~~------~~~~Dl 181 (428)
+..++||||.|.--. .+. ....|. +.+|.|++ ..+..|+.++..| +++..|++....=.+--+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456899998886422 111 122356 79999999 8888899999888 777777776543222111 379999
Q ss_pred EEEecc
Q 014247 182 IISEWM 187 (428)
Q Consensus 182 Vvs~~~ 187 (428)
++|++.
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999984
No 304
>PRK13699 putative methylase; Provisional
Probab=92.68 E-value=0.47 Score=43.84 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=45.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA 156 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~ 156 (428)
..+.+.+.+... .+|..|||-=||+|..+..+.+.|- +.+|+|++ ...+.|.+++..
T Consensus 150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 344444444433 5889999999999999998888866 89999999 889998888765
No 305
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.59 E-value=0.43 Score=44.69 Aligned_cols=97 Identities=20% Similarity=0.128 Sum_probs=66.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---CCceeEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DEEVDVII 183 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~~~DlVv 183 (428)
+...|+.|+-+|- .-+.++.++-. -+++|..+|++ .++....+.+++.|+.+ ++.+.-|+++--+ .++||+++
T Consensus 149 GDL~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 149 GDLEGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred cCcCCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCeee
Confidence 4457889999993 33556555554 37799999999 89999888888888865 8888889887322 18999999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccC
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRG 211 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~Lkpg 211 (428)
..+... ...+..++..=...||.-
T Consensus 227 TDPpeT----i~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 227 TDPPET----IKALKLFLGRGIATLKGE 250 (354)
T ss_pred cCchhh----HHHHHHHHhccHHHhcCC
Confidence 865221 122444444444445543
No 306
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.52 E-value=0.36 Score=49.84 Aligned_cols=93 Identities=23% Similarity=0.294 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc---------------
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--------------- 172 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--------------- 172 (428)
.++.+||-+|||. |..+..+++. |+ .|+++|.+ ..++.+++ .+. +++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHH
Confidence 4568999999996 5666666665 77 69999999 65554443 222 222222110
Q ss_pred --------ccC-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 173 --------VEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 173 --------l~~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
+.. -..+|+|+... .......+.-+.+++.+.+|||++++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Ta---lipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTA---LIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECc---ccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 110 15699998754 33333333345667788899999876
No 307
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.38 E-value=0.34 Score=44.11 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHH
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANE 152 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~ 152 (428)
.....+.+.+.+.. ..+|..|||.=||+|..+..+.+.|- +.+|+|++ ..++.|++
T Consensus 175 ~kP~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 33444555555544 36789999999999999999888866 89999999 88887764
No 308
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.82 E-value=0.33 Score=48.01 Aligned_cols=97 Identities=23% Similarity=0.176 Sum_probs=55.7
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCcee
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEVD 180 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~D 180 (428)
....++.+||-.|||. |.++..+|+. |+++|+++|.+ ...+.+++ .|...-+.....+. .++.....+|
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 3456789999998753 5555666665 77679999998 66555543 33311111111111 1111124689
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+-.. + . ...+....+.|++||+++..
T Consensus 248 ~vid~~-g----~----~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAV-G----R----PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECC-C----C----HHHHHHHHHHhccCCEEEEE
Confidence 998532 1 1 12344456789999988753
No 309
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.66 E-value=0.37 Score=47.91 Aligned_cols=96 Identities=26% Similarity=0.289 Sum_probs=55.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCcee
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEVD 180 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~D 180 (428)
....++.+||-.|+|. |.++..+|+. |+++|+++|.+ .-.+.+++ .|...-+.....+. .++. .+.+|
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-~~g~d 261 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-GGGVD 261 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-CCCCC
Confidence 3456788999999763 4555556665 77679999998 66655543 33321111111111 1111 23689
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+-.. + . ...+....+.|+++|+++..
T Consensus 262 ~vid~~-G----~----~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 262 YAFEMA-G----S----VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEEECC-C----C----hHHHHHHHHHHhcCCEEEEE
Confidence 998632 1 1 12344556789999988753
No 310
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.66 E-value=0.6 Score=45.67 Aligned_cols=54 Identities=28% Similarity=0.339 Sum_probs=38.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHH
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEV 153 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~ 153 (428)
+.+.|.......+-..|.|+|.|.|.++.+++-...-.|+|||-| ...+.|++.
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 333444333334557899999999999999987633389999999 666666553
No 311
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.40 E-value=0.17 Score=50.13 Aligned_cols=62 Identities=27% Similarity=0.392 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCc-EEEEEcccccc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDK-VIVLHGRVEDV 173 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~l 173 (428)
.+|..|-|+-||.|.++..+++.++ +|++-|.+ ++++..+.++..|.+... |+++..|+.+.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 7889999999999999999999985 99999999 999999999988888666 88888887654
No 312
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.30 E-value=0.57 Score=44.54 Aligned_cols=95 Identities=28% Similarity=0.252 Sum_probs=53.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE--cccccccCCCceeEEEE
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH--GRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~~l~~~~~~DlVvs 184 (428)
..++.+||-+|+|. |.++..+|++ |+++|+++|.+ .-.+.+++ .+...-+.... ..+.++.....+|+|+-
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence 35788999998863 4555556665 77679999988 55554443 23311111000 01111212246899885
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. + -...+....+.|+++|+++.-
T Consensus 194 ~~-G--------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 194 FS-G--------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CC-C--------ChHHHHHHHHHhcCCCEEEEe
Confidence 32 1 123455566789999988743
No 313
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.14 E-value=1.4 Score=44.43 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=57.4
Q ss_pred HHHHHHhccC-CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 100 YRAAIMQNQS-FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 100 ~~~~i~~~~~-~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
..+.+.+..+ ..+|++|+-+|||. |.....+++. |+ +|+.+|.+ .-+..|++ .|. ... +..+.-
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~v- 255 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEAV- 255 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHHH-
Confidence 3445555433 36899999999996 5555555554 77 79999998 44444433 332 222 122211
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+|+|+... .....+-.+..+.+++||+++..
T Consensus 256 -~~aDVVI~at--------G~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 256 -KEGDIFVTTT--------GNKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred -cCCCEEEECC--------CCHHHHHHHHHhcCCCCcEEEEe
Confidence 4579998732 11222223346789999998743
No 314
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.11 E-value=2.1 Score=40.38 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=64.9
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC------CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG------AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g------~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
...+.+.--..+...++|+|||.|.++.++++.- ...++.||-...-..+-..++.......++=+..|+.++.
T Consensus 7 i~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 7 IGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 3344443333567799999999999999999862 2378999986222233333443332234677778888876
Q ss_pred CC---C---ceeEEEEecchhhhcchhhHHHHHHHHhcccc-------cCeEEE
Q 014247 175 ID---E---EVDVIISEWMGYMLLYESMLGSVITARDRWLK-------RGGLIL 215 (428)
Q Consensus 175 ~~---~---~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lk-------pgG~lv 215 (428)
+. . ...-|+. ++-.|.+.. .+-.|+.+.+..+ ..|.++
T Consensus 87 l~~~~~~~~~~~~vv~--isKHLCG~A-TDlaLRcl~~~~~~~~~~~~~~gi~i 137 (259)
T PF05206_consen 87 LSKLPELQNDEKPVVA--ISKHLCGAA-TDLALRCLLNSQKLSEGNGSVRGIVI 137 (259)
T ss_pred hhhcccccCCCCcEEE--EEccccccc-hhHHHHhhccCccccccCCccCeEEE
Confidence 53 1 1222222 223444443 4555666655443 456655
No 315
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.89 E-value=0.59 Score=45.61 Aligned_cols=96 Identities=19% Similarity=0.131 Sum_probs=53.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc---cccccCCCceeE
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR---VEDVEIDEEVDV 181 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~l~~~~~~Dl 181 (428)
....++.+||-+|+|. |.++..++++ |+++|++++.+ +..+.+++ .|....+.....+ +.++.....+|+
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 3456789999998753 4455555554 77569999988 65555543 2332111111111 111112247999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+-.. . -...+....+.|+++|+++.
T Consensus 235 vid~~-----g----~~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 235 AIECS-----G----NTAARRLALEAVRPWGRLVL 260 (339)
T ss_pred EEECC-----C----CHHHHHHHHHHhhcCCEEEE
Confidence 98632 1 11233445577899998874
No 316
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.89 E-value=0.92 Score=44.51 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=53.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH--cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEe
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQ--AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISE 185 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~--~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~ 185 (428)
..++.+||-+|||. |.++..+++ .|+.+|+++|.+ .-++.|++ .+. ...+ .++.....+|+|+-.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~~~~g~d~viD~ 229 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIPEDLAVDHAFEC 229 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhhhccCCcEEEEC
Confidence 36789999999874 445555555 356689999998 65555543 111 1111 111111248998853
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. + .. ..+..+....++|++||+++.-
T Consensus 230 ~-G----~~-~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 230 V-G----GR-GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred C-C----CC-ccHHHHHHHHHhCcCCcEEEEE
Confidence 2 1 11 1234566667889999998753
No 317
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.88 E-value=0.23 Score=39.95 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=28.4
Q ss_pred ceeEEEEecchhhh---cchhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYML---LYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l---~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+||+|+|-.+.-.+ .+..-+..+++.+...|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 58999994432111 12234889999999999999999965
No 318
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.72 E-value=0.69 Score=44.69 Aligned_cols=85 Identities=25% Similarity=0.197 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
.++.+||-+|||. |.++..+|++ |++.|+++|.+ ..++.|.+. . ++ |..+. ....+|+|+-..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~-~~~g~Dvvid~~- 208 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD-PRRDYRAIYDAS- 208 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc-cCCCCCEEEECC-
Confidence 3577899999874 6666667765 88778888887 555444321 1 11 11110 124689988632
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ . ...+....++|+++|+++..
T Consensus 209 G----~----~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 209 G----D----PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred C----C----HHHHHHHHHhhhcCcEEEEE
Confidence 1 1 23445666789999998853
No 319
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.59 E-value=0.8 Score=45.13 Aligned_cols=92 Identities=21% Similarity=0.242 Sum_probs=52.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeC---h-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEE
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDA---S-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVII 183 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~---s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVv 183 (428)
..++.+||-+|+|. |.++..+|++ |+ +|++++. + .-.+.+ ++.|.. .+.....+..+......+|+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~----~~~Ga~-~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV----EELGAT-YVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH----HHcCCE-EecCCccchhhhhhcCCCCEEE
Confidence 35788999999864 5566666665 77 7999986 4 333333 333331 1111111111111125689988
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
-.. + . ...+....+.|++||+++.
T Consensus 244 d~~-g----~----~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 244 EAT-G----V----PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred ECc-C----C----HHHHHHHHHHccCCcEEEE
Confidence 632 1 1 1245666788999998874
No 320
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=90.50 E-value=0.51 Score=45.76 Aligned_cols=64 Identities=27% Similarity=0.368 Sum_probs=49.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC---CceeEEEEec
Q 014247 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID---EEVDVIISEW 186 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~~~DlVvs~~ 186 (428)
+++|+=||.|.+++-+.++|.+.|.++|++ ..++.-+.+.. .+..+|+.++... ..+|+++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEecc
Confidence 699999999999999999999899999999 66555555542 7788899887532 2599999865
No 321
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.39 E-value=1.2 Score=41.87 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-C--------CCeEEEEeCh-HHHHHHHHHHHHC-----CCCCcEEEEEcccccccCCC
Q 014247 113 GKVVVDVGCGTGILSIFCAQA-G--------AKRVYAVDAS-DIAVQANEVVKAN-----NLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~-g--------~~~V~giD~s-~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~l~~~~ 177 (428)
..+|+|+|+|+|.++..+.+. . ..+++.||+| .+.+..++.+... ....+|.++ .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 469999999999999888774 1 2389999999 7776666665431 233456663 3454443
Q ss_pred ceeEEEEec
Q 014247 178 EVDVIISEW 186 (428)
Q Consensus 178 ~~DlVvs~~ 186 (428)
..-+|+++-
T Consensus 95 ~~~~iiaNE 103 (252)
T PF02636_consen 95 FPGFIIANE 103 (252)
T ss_dssp CCEEEEEES
T ss_pred CCEEEEEee
Confidence 456677655
No 322
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=90.28 E-value=8.4 Score=35.78 Aligned_cols=107 Identities=20% Similarity=0.186 Sum_probs=66.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc----C-CCeEEEEeCh-HHHHH-HHHHHHHCCCCCcEEEEEcccccc--cCCCcee
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA----G-AKRVYAVDAS-DIAVQ-ANEVVKANNLTDKVIVLHGRVEDV--EIDEEVD 180 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~giD~s-~~~~~-a~~~~~~~~~~~~v~~~~~d~~~l--~~~~~~D 180 (428)
...+...+|+|+|+..-+..+..+ | ..+.+.||++ .++.. |+...+... .-.|.-+++|.+.- .+++.--
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-GLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-CCeEeehhhhHHHHHhcccCCCe
Confidence 355789999999998766665543 2 3489999999 76665 444544432 22366667775531 1122222
Q ss_pred EEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccC
Q 014247 181 VIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 181 lVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
-+++- +++.+.+. ..-..++.++...|+||-.+++..
T Consensus 155 Rl~~f-lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 155 RLFVF-LGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEE-ecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22221 34344332 446778999999999999888754
No 323
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=89.99 E-value=0.64 Score=45.08 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=57.5
Q ss_pred ccCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc---cccCCCcee
Q 014247 107 NQSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE---DVEIDEEVD 180 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~---~l~~~~~~D 180 (428)
.....++.+||..|+| .|..+..+|+. |. +|++++.+ ...+.+++ .+....+.....+.. .......+|
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 3345678899998876 36677777775 66 69999988 66655543 333211111110110 011235799
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+... . ....+..+.+.|+++|.++..
T Consensus 235 ~vid~~-----g----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 235 VIFDFV-----G----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEEECC-----C----CHHHHHHHHHHhhcCCEEEEE
Confidence 988632 1 123566677899999998753
No 324
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=89.58 E-value=0.95 Score=42.04 Aligned_cols=93 Identities=27% Similarity=0.341 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc---ccCCCceeEEE
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED---VEIDEEVDVII 183 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---l~~~~~~DlVv 183 (428)
..++.+||..|+|. |.....+++. | .+|++++.+ ...+.+++ .+....+.....+... ....+.+|+|+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 36789999999996 6566666665 5 489999998 65555433 2221111111111100 11236799999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
... + .. ..+..+.+.|+++|.++.
T Consensus 207 ~~~-~----~~----~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 207 DAV-G----GP----ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred ECC-C----CH----HHHHHHHHhcccCCEEEE
Confidence 643 1 10 234555677899998874
No 325
>PLN02740 Alcohol dehydrogenase-like
Probab=89.50 E-value=2.1 Score=42.65 Aligned_cols=92 Identities=23% Similarity=0.266 Sum_probs=53.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-----c----ccccC
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-----V----EDVEI 175 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~----~~l~~ 175 (428)
....++.+||-+|||. |.++..+|+. |+++|+++|.+ +-.+.+++ .|.. .++... . .++.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~~- 265 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREMT- 265 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHHh-
Confidence 4457889999999863 4455556665 77679999998 66666543 2332 122211 1 1111
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILP 216 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~ 216 (428)
.+.+|+|+-.. + . ...+......+++| |+++.
T Consensus 266 ~~g~dvvid~~-G----~----~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 266 GGGVDYSFECA-G----N----VEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCCCEEEECC-C----C----hHHHHHHHHhhhcCCCEEEE
Confidence 13699998632 1 1 12344455677886 87764
No 326
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=89.08 E-value=0.98 Score=40.15 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhccCCCCCC-EEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCC--CcEEEEEccc
Q 014247 95 VRTETYRAAIMQNQSFIEGK-VVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLT--DKVIVLHGRV 170 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~-~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~ 170 (428)
.|+..+.+.+.+.+...++. .|+.+|||-=.....+... +..+++-+|..++++.-++.+...+.. .+.+++.+|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 55566666666665433444 8999999998888888775 233677777777777766666655321 2356788888
Q ss_pred ccccC----------CCceeEEEEecchhhhcchhhHHHHHHHH
Q 014247 171 EDVEI----------DEEVDVIISEWMGYMLLYESMLGSVITAR 204 (428)
Q Consensus 171 ~~l~~----------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~ 204 (428)
.+... +...-+++++.+..++. ......+++.+
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~-~~~~~~ll~~i 182 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLS-PEQVDALLRAI 182 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS--HHHHHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCC-HHHHHHHHHHh
Confidence 75311 25566888887554443 33356666543
No 327
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.86 E-value=0.49 Score=46.05 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=47.7
Q ss_pred EEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEec
Q 014247 116 VVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEW 186 (428)
Q Consensus 116 VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~ 186 (428)
|+|+-||.|.++.-+.++|..-+.++|++ ..++.-+.+. .+ .++.+|+.++... ..+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~-----~~--~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF-----GN--KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC-----CC--CCCccChhhhhhhhCCCcCEEEecC
Confidence 68999999999999999999778899999 5555544442 22 4456788877532 4689998854
No 328
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=88.69 E-value=1.3 Score=47.74 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-------CC------CeEEEEeCh----HHHHHH-----------HHHHHH-----C
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-------GA------KRVYAVDAS----DIAVQA-----------NEVVKA-----N 157 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-------g~------~~V~giD~s----~~~~~a-----------~~~~~~-----~ 157 (428)
.+.-+|||+|-|+|...+.+.+. .. -+++++|.. +.+..+ .+.... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 34469999999999865554421 11 278899963 222221 122111 1
Q ss_pred CC------CC--cEEEEEcccccccC--CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 158 NL------TD--KVIVLHGRVEDVEI--DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 158 ~~------~~--~v~~~~~d~~~l~~--~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
++ .+ .++++.+|+.+.-. ...+|+++...+.-.-..+---+++++.+.++++|||.+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 21 11 35677788766322 2579999987532222222224678999999999999987
No 329
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.10 E-value=1.5 Score=41.98 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=66.0
Q ss_pred CCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecch
Q 014247 113 GKVVVDVGCGT-GILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMG 188 (428)
Q Consensus 113 ~~~VLDiGcGt-G~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~ 188 (428)
..+|.-||.|. |..+..+|- .|+ +|+.+|+| +-+......+ ..++..+.....++... .+.|+||...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v~~aDlvIgaV-- 239 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAVKKADLVIGAV-- 239 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHhhhccEEEEEE--
Confidence 35677788775 444444443 356 89999999 6665544332 34678887777666544 7899999865
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.+.....+.-+.+++...+|||+.++
T Consensus 240 -LIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 240 -LIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -EecCCCCceehhHHHHHhcCCCcEEE
Confidence 55566667777888889999999887
No 330
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.93 E-value=1.3 Score=43.45 Aligned_cols=96 Identities=25% Similarity=0.268 Sum_probs=52.4
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc---cccccCCCcee-E
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR---VEDVEIDEEVD-V 181 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~l~~~~~~D-l 181 (428)
...++.+||-.|||. |.++..+|++ |++.|++++.+ +-.+.+++ .+...-+.....+ +.++.....+| +
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 446788999998764 4455555664 77668999988 65554432 2321111111111 11111124677 5
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+- ..+ . ...+....+.|++||+++..
T Consensus 233 v~d-~~G----~----~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILE-TAG----V----PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEE-CCC----C----HHHHHHHHHHhhcCCEEEEE
Confidence 443 222 1 23455566788999998754
No 331
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.37 E-value=2.6 Score=40.97 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc---cccccC-CCceeEEE
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR---VEDVEI-DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~l~~-~~~~DlVv 183 (428)
.++.+||..|||. |..+..+++. |+.+|++++.+ ...+.+++ .+.. .++..+ ...+.. ...+|+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 4788999998875 5566666665 77679999988 66554433 2321 222211 112221 24599999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
... + . ...+....+.|+++|+++.
T Consensus 237 d~~-g----~----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 237 EAS-G----A----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 632 1 0 2235566788999999874
No 332
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.25 E-value=5.1 Score=36.18 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
....+|+-+|||. | ..+..+++.|.++++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3457899999985 3 46777888899889998876
No 333
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.04 E-value=3.7 Score=36.35 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=62.3
Q ss_pred EEEEEcCCCc--HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH-------CC-CC--------CcEEEEEcccccccC
Q 014247 115 VVVDVGCGTG--ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA-------NN-LT--------DKVIVLHGRVEDVEI 175 (428)
Q Consensus 115 ~VLDiGcGtG--~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~l~~ 175 (428)
+|.-||+|+= .++..++..|. +|+.+|.+ +.++.+++.+.. .+ +. .++.+. .|+.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHHh-
Confidence 4677899863 46667777787 99999999 888877776554 11 11 235533 4555443
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
..|+|+=. .......-.++++++.+.+.|+.+|.-.+.++
T Consensus 78 --~adlViEa----i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 78 --DADLVIEA----IPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp --TESEEEE-----S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred --hhheehhh----ccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 68998853 34444557889999999999999988665544
No 334
>PRK11524 putative methyltransferase; Provisional
Probab=86.88 E-value=0.71 Score=44.20 Aligned_cols=55 Identities=25% Similarity=0.276 Sum_probs=38.4
Q ss_pred EEEEEcccccc--cC-CCceeEEEEecchhhh-------------cchhhHHHHHHHHhcccccCeEEEcc
Q 014247 163 VIVLHGRVEDV--EI-DEEVDVIISEWMGYML-------------LYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 163 v~~~~~d~~~l--~~-~~~~DlVvs~~~~~~l-------------~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..++++|+.++ .+ +++||+|++++..... .+...+..++.++.++|||||.+++.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57888998774 22 3789999998632110 01122467889999999999998863
No 335
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.81 E-value=3.9 Score=36.97 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
....+||-+|||. | ..+..|++.|.++++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4567899999994 3 46677888899999999976
No 336
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=86.78 E-value=1.8 Score=35.54 Aligned_cols=81 Identities=27% Similarity=0.300 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc-------cccCCCceeEEEEecchhhhc
Q 014247 122 GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE-------DVEIDEEVDVIISEWMGYMLL 192 (428)
Q Consensus 122 GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-------~l~~~~~~DlVvs~~~~~~l~ 192 (428)
|.|.++..+|+. | .+|+++|.+ .-.+.+++ .|. -.++..+-. ++.....+|+|+-.. .
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----G 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----S
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hcc---cccccccccccccccccccccccceEEEEec-----C
Confidence 457888888887 7 699999999 66555543 332 122322222 112224799998632 1
Q ss_pred chhhHHHHHHHHhcccccCeEEEccCC
Q 014247 193 YESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 193 ~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
-...++....+|+++|+++.-..
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESS
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEc
Confidence 13456677788999999886443
No 337
>PLN02827 Alcohol dehydrogenase-like
Probab=86.38 E-value=3.4 Score=41.20 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=53.1
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE--cccc----cccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH--GRVE----DVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~----~l~~~~~ 178 (428)
....++.+||-.|+|. |.++..+|++ |+..|+++|.+ +..+.|++ .|...-+.... .+.. ++. .+.
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~-~~g 263 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT-GGG 263 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-CCC
Confidence 3456789999998754 4455555654 77679999988 65555533 34321111111 0111 111 136
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~ 216 (428)
+|+|+-.. + . ...+....++|++| |+++.
T Consensus 264 ~d~vid~~-G----~----~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 264 ADYSFECV-G----D----TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCEEEECC-C----C----hHHHHHHHHhhccCCCEEEE
Confidence 89988632 1 1 12344455678898 98874
No 338
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.22 E-value=5.1 Score=36.57 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh-------------------HHHHHHHHHHHHCCCCCcEEEEEcc
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS-------------------DIAVQANEVVKANNLTDKVIVLHGR 169 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s-------------------~~~~~a~~~~~~~~~~~~v~~~~~d 169 (428)
.+..+|+-+|||. | ..+..+++.|..+++.+|.+ .-++.+.+++.+.+..-+++.+...
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 3557899999994 3 46777888899899999876 1233344444443333335545444
Q ss_pred cccccC---CCceeEEEEe
Q 014247 170 VEDVEI---DEEVDVIISE 185 (428)
Q Consensus 170 ~~~l~~---~~~~DlVvs~ 185 (428)
+..... -..+|+|+..
T Consensus 106 i~~~~~~~~~~~~DvVI~a 124 (212)
T PRK08644 106 IDEDNIEELFKDCDIVVEA 124 (212)
T ss_pred cCHHHHHHHHcCCCEEEEC
Confidence 332111 1579999963
No 339
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=85.96 E-value=4.5 Score=40.10 Aligned_cols=95 Identities=25% Similarity=0.233 Sum_probs=54.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE--ccc----ccccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH--GRV----EDVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~----~~l~~~~~ 178 (428)
....++.+||-.|||. |.++..+|+. |+.+|+++|.+ +-.+.+++ .|...-+.... .++ .++. .+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-~~g 255 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-DGG 255 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-CCC
Confidence 3457789999999863 5556666665 77689999998 66665543 23321111110 011 1111 136
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~ 216 (428)
+|+|+-.. + . ...+....+.|+++ |+++.
T Consensus 256 ~d~vid~~-G----~----~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 256 VDYSFECI-G----N----VNVMRAALECCHKGWGESII 285 (368)
T ss_pred CCEEEECC-C----C----HHHHHHHHHHhhcCCCeEEE
Confidence 89888632 1 1 22344555678886 87764
No 340
>PRK05854 short chain dehydrogenase; Provisional
Probab=85.65 E-value=6 Score=38.23 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..++++|-.|++.|+ ++..+++.|+ +|+.+..+ +-.+.+.+.+....-..++.++.+|+.+...
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999988765 4555666787 89988887 5555555444433222358889999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
.++.|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 15689988764
No 341
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=84.79 E-value=4.4 Score=39.85 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=56.1
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cccc-cc--CCCc
Q 014247 107 NQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVED-VE--IDEE 178 (428)
Q Consensus 107 ~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-l~--~~~~ 178 (428)
.....+|.+||-.|+ |.|.++..+|++ |+ +|++++.+ +..+.+++ ..|...-+..... +..+ +. .++.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCCC
Confidence 344578899999998 356777777776 76 79999888 65554432 2333211111111 2111 10 1246
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+-.. + . ..+....+.|++||+++.
T Consensus 229 vD~v~d~v-G-----~----~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 229 IDIYFDNV-G-----G----DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred cEEEEECC-C-----H----HHHHHHHHHhccCCEEEE
Confidence 89998532 1 1 234556678999999874
No 342
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=84.65 E-value=1.6 Score=36.24 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=48.0
Q ss_pred cEEEEEcccccc-c-CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhh
Q 014247 162 KVIVLHGRVEDV-E-IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFW 239 (428)
Q Consensus 162 ~v~~~~~d~~~l-~-~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~ 239 (428)
.+++..+|+.+. + +...||+|+-..+.-.-..+---.++++.+.++++|||.+.-.+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------------
Confidence 367777887653 1 23789999987643222222224678999999999999887321
Q ss_pred hccCCCCcchhHHHHHhcCCCCceEEee
Q 014247 240 RNVYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 240 ~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
....++..|.++||.+....-+
T Consensus 91 ------~a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 91 ------SAGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp -------BHHHHHHHHHCTEEEEEEE-S
T ss_pred ------chHHHHHHHHHcCCEEEEcCCC
Confidence 1234677788999986554433
No 343
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=84.51 E-value=7.6 Score=37.82 Aligned_cols=90 Identities=22% Similarity=0.143 Sum_probs=52.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
....++.+||-.|+|. |.++..+|+. |+ +|++++.+ .-.+.|++ .|... ++. ..+. ..+.+|+++.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~-~~~~~d~~i~ 229 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT-PPEPLDAAIL 229 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc-CcccceEEEE
Confidence 3457789999999753 4455556665 76 79999988 55554444 33321 121 1111 1245787663
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. .. ...+....+.|++||+++..
T Consensus 230 ~~---~~------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 230 FA---PA------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CC---Cc------HHHHHHHHHhhCCCcEEEEE
Confidence 11 11 13456667889999998753
No 344
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.47 E-value=5.5 Score=36.69 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=45.8
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh--------------------HHHHHHHHHHHHCCCCCcEEEEEc
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS--------------------DIAVQANEVVKANNLTDKVIVLHG 168 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s--------------------~~~~~a~~~~~~~~~~~~v~~~~~ 168 (428)
....+||-+|||. | ..+..|++.|.++++.+|.+ .-++.+.+++++.+..-+++.+..
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 3457899999994 3 46777888899999988543 233444444444433234555554
Q ss_pred cccccc---CCCceeEEEEe
Q 014247 169 RVEDVE---IDEEVDVIISE 185 (428)
Q Consensus 169 d~~~l~---~~~~~DlVvs~ 185 (428)
.+.... +-..+|+|++.
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEc
Confidence 442211 11569999974
No 345
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=84.41 E-value=3.8 Score=40.20 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC---------CCeEEEEeCh-HHHHHHHHHHHH
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG---------AKRVYAVDAS-DIAVQANEVVKA 156 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g---------~~~V~giD~s-~~~~~a~~~~~~ 156 (428)
.....++++|.|+|.++..+.+.. +.++..||+| +....-++.++.
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 345689999999999987776641 4589999999 777766666554
No 346
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.38 E-value=12 Score=34.01 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------C
Q 014247 112 EGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----------D 176 (428)
Q Consensus 112 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----------~ 176 (428)
++++||-.|++.|. ++..+++.|+ +|++++.+ +-...+.+..... .++.++.+|+.+... -
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56799999987543 3444455677 89999988 5444443333332 247888888875321 1
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
+.+|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 3568887654
No 347
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=84.16 E-value=5.1 Score=34.91 Aligned_cols=106 Identities=10% Similarity=0.115 Sum_probs=66.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc---c
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED---V 173 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---l 173 (428)
+.+.+.+.+.. ..+.+|+-|||=+-...+.-......+++..|.+ ..... .++ .|+.-|... +
T Consensus 13 ~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~----------~~~-~F~fyD~~~p~~~ 79 (162)
T PF10237_consen 13 EFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF----------GGD-EFVFYDYNEPEEL 79 (162)
T ss_pred HHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc----------CCc-ceEECCCCChhhh
Confidence 34555555543 4568999999998544443312234489999999 55321 112 344444433 2
Q ss_pred c--CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 174 E--IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 174 ~--~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+ +.++||+|++++. +..+.........+.-++++++.++..++
T Consensus 80 ~~~l~~~~d~vv~DPP---Fl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 80 PEELKGKFDVVVIDPP---FLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred hhhcCCCceEEEECCC---CCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 1 1379999999884 24555567777888888899998886553
No 348
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=84.14 E-value=4.5 Score=36.02 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE
Q 014247 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH 167 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~ 167 (428)
....-.|++.|-+ .+...|+++|.-.|..+++.|.. | ..+|.++|++ .-...+... ..+|.|++
T Consensus 55 p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~e 124 (237)
T COG3510 55 PSDMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIE 124 (237)
T ss_pred HHHHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEe
Confidence 3333455555544 45678999999999877776653 4 2389999999 554332221 24699999
Q ss_pred cccccccC-------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 168 GRVEDVEI-------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 168 ~d~~~l~~-------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
++..+... ...+--|+.. +.....++. .-..|+...++|.-|-.+++.+..+.
T Consensus 125 gss~dpai~eqi~~~~~~y~kIfvi-lDsdHs~~h-vLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 125 GSSTDPAIAEQIRRLKNEYPKIFVI-LDSDHSMEH-VLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEE-ecCCchHHH-HHHHHHHhhhHhhcCceEEEeccccc
Confidence 99876432 1222233331 122222222 34456777889999999887766544
No 349
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.12 E-value=0.26 Score=42.13 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=32.5
Q ss_pred CceeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCee
Q 014247 177 EEVDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
.+.|+|+++- ++.|. .....+++.++++|||||.|-++.+..
T Consensus 46 ns~d~iyaeH---vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 46 NSVDAIYAEH---VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cchHHHHHHH---HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 8999999865 44443 336678999999999999998776544
No 350
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.07 E-value=1.8 Score=42.52 Aligned_cols=96 Identities=27% Similarity=0.273 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCcee
Q 014247 108 QSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEVD 180 (428)
Q Consensus 108 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~D 180 (428)
....++.+||-.|+| .|..+..+|+. |+..|++++.+ ...+.+++ .+....+.....+. ..+.....+|
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCc
Confidence 345678899999876 24555556665 77679999988 55544443 33321111111111 1112224699
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+... .. ...+....+.|+++|+++.
T Consensus 238 ~vld~~-----g~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 238 AVIIAG-----GG----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred EEEECC-----CC----HHHHHHHHHHhhcCCEEEE
Confidence 998632 11 2345666778999998874
No 351
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=83.76 E-value=2 Score=42.59 Aligned_cols=91 Identities=22% Similarity=0.292 Sum_probs=54.2
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-------cccccCCCc
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-------VEDVEIDEE 178 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~l~~~~~ 178 (428)
...++.+||-.|+|. |.++..+|++ |++.|++++.+ .....+++ .+.. .++..+ +..+. ...
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~-~~~ 254 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREIT-GGG 254 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHh-CCC
Confidence 446788999998754 5566666665 78789999998 55544433 2321 222211 11122 356
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+-.. + . ...+..+.+.|+++|+++.
T Consensus 255 ~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 255 VDYALDTT-G----V----PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred CcEEEECC-C----C----cHHHHHHHHHhccCCEEEE
Confidence 89998632 1 1 1234566777899998874
No 352
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.76 E-value=7.8 Score=37.02 Aligned_cols=73 Identities=18% Similarity=0.338 Sum_probs=56.5
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
...|+.||==|.|.|. +++.+|++|+ ++...|++ .-.....+.+++.| ++....+|+.+.+.
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 3568899999999985 7888899988 89999999 66666666666664 58888888876421
Q ss_pred C-CceeEEEEec
Q 014247 176 D-EEVDVIISEW 186 (428)
Q Consensus 176 ~-~~~DlVvs~~ 186 (428)
+ +.+|++|.+.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 1 7899999865
No 353
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.65 E-value=2 Score=42.07 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=50.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC---C-ceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID---E-EVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~-~~DlVvs~~ 186 (428)
.+++|+=||.|.+.+-+..+|++-+.++|++ ..++.-+.+... ..++..|+.++... . .+|+|+..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 5899999999999999999999889999999 554444333221 45677787766543 2 789999855
No 354
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=83.39 E-value=2.4 Score=41.31 Aligned_cols=95 Identities=25% Similarity=0.385 Sum_probs=52.9
Q ss_pred CCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCceeE
Q 014247 109 SFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEVDV 181 (428)
Q Consensus 109 ~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~Dl 181 (428)
...++.+||..|+| .|..+..+|+. |...|++++.+ ...+.+++ .+....+.....+. ..+...+.+|+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 34578899998765 35566666665 65578898777 55444433 23211111111111 11222256999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+... + . ...+....+.|+++|+++.
T Consensus 240 vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 240 VIEAV-G----F----EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred EEEcc-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 98632 1 1 1345666778899998874
No 355
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=83.30 E-value=3.4 Score=40.02 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=55.4
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-ccccc---cCCC
Q 014247 106 QNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVEDV---EIDE 177 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l---~~~~ 177 (428)
+.....++.+||-.|+ |.|.++..+|+. |+ +|++++.+ +..+.+++ .|...-+..... +..+. ...+
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCC
Confidence 3345578899999985 456677777776 66 79999888 65554432 343211111110 11110 1124
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+|+|+-.. + . ..+....+.|+++|+++.
T Consensus 207 gvdvv~d~~-G----~-----~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 207 GYDCYFDNV-G----G-----EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred CeEEEEECC-C----H-----HHHHHHHHHhCcCcEEEE
Confidence 699998532 1 1 123455678999999884
No 356
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.30 E-value=2.8 Score=41.25 Aligned_cols=75 Identities=28% Similarity=0.317 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeChH----------------------HHHHHHHHHHHCCCCCcEEEE
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDASD----------------------IAVQANEVVKANNLTDKVIVL 166 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s~----------------------~~~~a~~~~~~~~~~~~v~~~ 166 (428)
...++||-||||. | .++..|+++|.++++.+|.+. -++.|++.+.+.+..-+++.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 4567899999994 3 467778888999999999862 123344455444333345666
Q ss_pred Eccccccc---CCCceeEEEEe
Q 014247 167 HGRVEDVE---IDEEVDVIISE 185 (428)
Q Consensus 167 ~~d~~~l~---~~~~~DlVvs~ 185 (428)
..++..-. .-..+|+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEc
Confidence 55543211 12679999974
No 357
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=83.23 E-value=7.4 Score=38.45 Aligned_cols=96 Identities=24% Similarity=0.269 Sum_probs=53.3
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc------cccccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR------VEDVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~l~~~~~ 178 (428)
....++.+||-.|+|. |.++..+|+. |+.+|++++.+ .-.+.+++ .+...-+.....+ +.++.. ..
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~-~g 254 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTG-GG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhC-CC
Confidence 3457889999998753 4444555555 77689999988 66555533 2332111111100 111111 46
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
+|+|+-.. + . ...+....+.|+++ |+++..
T Consensus 255 ~d~vid~~-g----~----~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 255 VDYSFECT-G----N----ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CCEEEECC-C----C----hHHHHHHHHhcccCCCEEEEE
Confidence 89998532 1 1 12445556678875 887643
No 358
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.88 E-value=2.9 Score=40.12 Aligned_cols=47 Identities=32% Similarity=0.422 Sum_probs=35.5
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHH
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEV 153 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~ 153 (428)
.....+|.+|.-+|+|. |+...+-|++ |+.+++|||++ +-.+.|++.
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 34567899999999997 4444555554 99999999999 777776553
No 359
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=82.41 E-value=12 Score=37.26 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=62.6
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCc-EEEEEcccccccCCCceeEEEEecchhhhcc
Q 014247 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDK-VIVLHGRVEDVEIDEEVDVIISEWMGYMLLY 193 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~-v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~ 193 (428)
.||-++-.-|.++..++..+... ..|.--.-...+++++.|++... ++++.. .+ ++++.+|+|+.-+ --.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~--~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-~~~~~~d~vl~~~----PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYS--IGDSYISELATRENLRLNGIDESSVKFLDS--TA-DYPQQPGVVLIKV----PKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCe--eehHHHHHHHHHHHHHHcCCCcccceeecc--cc-cccCCCCEEEEEe----CCC
Confidence 79999999999999999754421 13332223335678888887543 555532 21 3346799999743 122
Q ss_pred hhhHHHHHHHHhcccccCeEEEc
Q 014247 194 ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 194 ~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
...++..+..+...|.||+.++.
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~ 140 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIA 140 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEE
Confidence 34577888999999999999774
No 360
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=82.40 E-value=2.6 Score=42.34 Aligned_cols=100 Identities=23% Similarity=0.184 Sum_probs=56.1
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc---cc----ccccCCCc
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG---RV----EDVEIDEE 178 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~----~~l~~~~~ 178 (428)
...++.+||-.|+|. |.++..+|+. |++.|+++|.+ .-.+.|++ .|.. .+... +. .++.....
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHcCCCC
Confidence 456788888888763 4555556664 88677777887 55555544 2331 12211 11 11122246
Q ss_pred eeEEEEecchhhh-----c-chhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYML-----L-YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l-----~-~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+-.. +.-- . ........++...+++++||++++
T Consensus 255 ~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 255 VDCAVDCV-GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CcEEEECC-CCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 89998632 2100 0 001123466777789999998875
No 361
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=82.32 E-value=9.6 Score=37.69 Aligned_cols=95 Identities=26% Similarity=0.278 Sum_probs=53.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc--ccc----cccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG--RVE----DVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~~----~l~~~~~ 178 (428)
....++.+||-.|+|. |.++..+|+. |+++|+++|.+ +..+.+++ .|...-+..... +.. ++. .+.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-~~g 256 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-DGG 256 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-CCC
Confidence 3456789999998753 4455555665 77679999998 66655543 233211111111 111 111 136
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~ 216 (428)
+|+|+-.. + . ...+....+.|+++ |+++.
T Consensus 257 ~d~vid~~-g----~----~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 257 VDYTFECI-G----N----VKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred CcEEEECC-C----C----hHHHHHHHHhhccCCCeEEE
Confidence 89998632 1 1 12445556678887 87774
No 362
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.30 E-value=3.9 Score=39.92 Aligned_cols=97 Identities=26% Similarity=0.293 Sum_probs=55.2
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-------cccccCC
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-------VEDVEID 176 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~l~~~ 176 (428)
.....++.+||-.|+|. |..+..+|+. |++.|++++.+ +....+++. +....+.....+ +.+....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCC
Confidence 34557888999888764 5556666665 77558899887 665555332 221111111111 1122222
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+|+|+... + . ...+....+.|+++|+++.
T Consensus 233 ~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 233 KGPDVVIECT-G----A----ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 5699999632 1 1 1245566778999998874
No 363
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.23 E-value=11 Score=30.59 Aligned_cols=84 Identities=23% Similarity=0.154 Sum_probs=54.5
Q ss_pred CEEEEEcCCCc-HHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEecchhh
Q 014247 114 KVVVDVGCGTG-ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEWMGYM 190 (428)
Q Consensus 114 ~~VLDiGcGtG-~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~~~~~ 190 (428)
.+|.+||-|-= ..+..++++|+ .|+++|+++- .+ - ..+.++..|+++-... ...|+|.|-
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a----~-~g~~~v~DDitnP~~~iY~~A~lIYSi----- 77 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TA----P-EGLRFVVDDITNPNISIYEGADLIYSI----- 77 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cC----c-ccceEEEccCCCccHHHhhCccceeec-----
Confidence 38999998864 35677888887 7999999932 11 1 2488999999875543 778999982
Q ss_pred hcchhhHHHHHHHHhcccccCeEEE
Q 014247 191 LLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 191 l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
-....+...+-.+.+.++-.-.+.
T Consensus 78 -RpppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 78 -RPPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred -CCCHHHHHHHHHHHHhhCCCEEEE
Confidence 223334444444555444444443
No 364
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=82.19 E-value=3.6 Score=40.08 Aligned_cols=93 Identities=26% Similarity=0.328 Sum_probs=53.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc------cccccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR------VEDVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~l~~~~~ 178 (428)
....++.+||-.|+|. |..+..+|+. |.+.|++++.+ ...+.++ ..+.. .++..+ +........
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~----~~g~~---~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR----ELGAD---DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCC---EEecCccccHHHHHHHhCCCC
Confidence 3456788999998754 5555556665 66559999887 5554442 22321 222111 111222245
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+... . ....+..+.+.|+++|+++.
T Consensus 228 ~d~vld~~-----g----~~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 228 ADLVIEAA-----G----SPATIEQALALARPGGKVVL 256 (343)
T ss_pred CCEEEECC-----C----CHHHHHHHHHHhhcCCEEEE
Confidence 99998632 1 12344566778899998874
No 365
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=82.18 E-value=4.1 Score=37.98 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=52.7
Q ss_pred HHHHHHHHHh-ccCCCCCCEEEEEcCCCcH----HHHHHHHc---CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEc
Q 014247 97 TETYRAAIMQ-NQSFIEGKVVVDVGCGTGI----LSIFCAQA---GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHG 168 (428)
Q Consensus 97 ~~~~~~~i~~-~~~~~~~~~VLDiGcGtG~----ls~~la~~---g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~ 168 (428)
+.++.+.|.. .+.....++||-+|+|+-- -+..+.+. ++ -++-.|+.+.+.. --..+.+
T Consensus 45 YtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~a-ilvDnDi~d~vSD------------a~~~~~~ 111 (299)
T PF06460_consen 45 YTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDA-ILVDNDIRDYVSD------------ADQSIVG 111 (299)
T ss_dssp HHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT--EEEEEESS--B-S------------SSEEEES
T ss_pred HHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCc-EEEecchhhhccc------------cCCceec
Confidence 3344444433 2334567899999998621 22333332 23 5556666544321 2345668
Q ss_pred ccccccCCCceeEEEEecch--------hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 169 RVEDVEIDEEVDVIISEWMG--------YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 169 d~~~l~~~~~~DlVvs~~~~--------~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|...+..+.++|+|+|..-+ .....+.-...+..-+...|+-||.+++.
T Consensus 112 Dc~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 112 DCRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp -GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 98888888999999997621 01112333555566667889999988753
No 366
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=81.48 E-value=13 Score=31.57 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=43.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+..++.+.....++++|+-+|||. ..++..+++.|...|+.+|.+ +..+...+...... +.....+..+. .
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~ 79 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--L 79 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--c
Confidence 444555443235678999999973 123333444455589999998 55444333322110 11122233322 2
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
+.+|+|++..
T Consensus 80 ~~~Dvvi~~~ 89 (155)
T cd01065 80 AEADLIINTT 89 (155)
T ss_pred ccCCEEEeCc
Confidence 6789999864
No 367
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=81.27 E-value=3.4 Score=40.42 Aligned_cols=97 Identities=23% Similarity=0.218 Sum_probs=56.3
Q ss_pred hccCCCCCCEEEEEcCCC--cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc----ccCCC
Q 014247 106 QNQSFIEGKVVVDVGCGT--GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED----VEIDE 177 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt--G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----l~~~~ 177 (428)
......++.+||-.|+.. |.++..+|++ |+ .++++-.+ +-.+.+++ .|-...+.+...|+.+ +....
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCC
Confidence 344557799999998554 5677778886 66 56665555 44444333 3333233333443322 22224
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+|+|+... -...+......|+++|+++..
T Consensus 211 gvDvv~D~v----------G~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 211 GVDVVLDTV----------GGDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred CceEEEECC----------CHHHHHHHHHHhccCCEEEEE
Confidence 799999743 112233455678999988753
No 368
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=81.25 E-value=4.2 Score=36.95 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=53.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
+.+.|.+..+.....-|.+||.|.|..+..+..+|+.+...+|++ .++.-.+...+.. ..+..+.++|+...
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEecccccee
Confidence 344556666667778999999999999999999998899999998 7766655444432 23577778886543
No 369
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.12 E-value=5 Score=37.54 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecch
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMG 188 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~~ 188 (428)
..+++...|+|+-.|.++..+.+++- .|++||-..|+.-. -.. ..|+-...|-..+.+ ..+.|-.||..
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL----~dt---g~v~h~r~DGfk~~P~r~~idWmVCDm-- 278 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSL----MDT---GQVTHLREDGFKFRPTRSNIDWMVCDM-- 278 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhh----hcc---cceeeeeccCcccccCCCCCceEEeeh--
Confidence 36789999999999999999999877 89999988775432 222 347888888777665 58899999975
Q ss_pred hhhcchhhHHHHHHHHhcccccC
Q 014247 189 YMLLYESMLGSVITARDRWLKRG 211 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~Lkpg 211 (428)
.. .+..+-..+..+|..|
T Consensus 279 --VE---kP~rv~~li~~Wl~nG 296 (358)
T COG2933 279 --VE---KPARVAALIAKWLVNG 296 (358)
T ss_pred --hc---CcHHHHHHHHHHHHcc
Confidence 22 2444444555566554
No 370
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=81.06 E-value=6 Score=38.51 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=53.3
Q ss_pred CCCC--CEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCce
Q 014247 110 FIEG--KVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEV 179 (428)
Q Consensus 110 ~~~~--~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~ 179 (428)
..++ .+||-.|+ |.|..+..+|++ |+.+|++++.+ +..+.+++. .|....+.....++ .++. +..+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-~~gv 225 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-PEGV 225 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-CCCc
Confidence 3444 89999986 456677777776 76579999888 655544432 23321111111111 1111 2469
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+|+... + . . .+....+.|+++|+++.
T Consensus 226 d~vid~~-g----~-~----~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 226 DVYFDNV-G----G-E----ISDTVISQMNENSHIIL 252 (345)
T ss_pred eEEEECC-C----c-H----HHHHHHHHhccCCEEEE
Confidence 9998632 1 1 1 13455678999999884
No 371
>PRK13699 putative methylase; Provisional
Probab=81.03 E-value=1.8 Score=40.03 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=36.2
Q ss_pred EEEEEcccccc--cC-CCceeEEEEecchhhh-c-----------chhhHHHHHHHHhcccccCeEEEc
Q 014247 163 VIVLHGRVEDV--EI-DEEVDVIISEWMGYML-L-----------YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 163 v~~~~~d~~~l--~~-~~~~DlVvs~~~~~~l-~-----------~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++++++|..++ .+ ++++|+|+..+.-... . ...-...++.++.|+|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 36778887664 33 3899999998632110 0 012246788999999999998874
No 372
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=81.00 E-value=3 Score=40.19 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=55.2
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc----cccCCC
Q 014247 106 QNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE----DVEIDE 177 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~----~l~~~~ 177 (428)
......+|.+||-.|+ |.|.++..+|+. |+ +|++++.+ +..+.+++ .|...-+.....+.. .+. ..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~-~~ 210 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA-PD 210 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC-CC
Confidence 3344578899999885 456666667776 66 79999887 65555443 343211111111111 111 24
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+|+|+... + . ..+....+.|+++|+++.
T Consensus 211 gvd~vld~~-g----~-----~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 211 GIDCYFDNV-G----G-----EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CcEEEEECC-C----H-----HHHHHHHHhhccCCEEEE
Confidence 689998532 1 1 234566778999999874
No 373
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=81.00 E-value=6.4 Score=38.70 Aligned_cols=75 Identities=28% Similarity=0.321 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeChH----------------------HHHHHHHHHHHCCCCCcEEEE
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDASD----------------------IAVQANEVVKANNLTDKVIVL 166 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s~----------------------~~~~a~~~~~~~~~~~~v~~~ 166 (428)
....+||-+|||. | .++..|++.|..+++.+|.+. -++.+++.+++.+-.-+++.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3557899999994 3 467778888999999999751 223334444433322235555
Q ss_pred Ecccccc---cCCCceeEEEEe
Q 014247 167 HGRVEDV---EIDEEVDVIISE 185 (428)
Q Consensus 167 ~~d~~~l---~~~~~~DlVvs~ 185 (428)
..++..- .+-..+|+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~ 123 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIIDA 123 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEEc
Confidence 5554321 112679999984
No 374
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.98 E-value=12 Score=37.84 Aligned_cols=93 Identities=26% Similarity=0.336 Sum_probs=53.1
Q ss_pred HHHHhccC-CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 102 AAIMQNQS-FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDASD-IAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 102 ~~i~~~~~-~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s~-~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
+.+.+... ...|++|+-+|+|. |......++. |+ +|+++|.++ -...|. ..|. .+. ++.+.- .
T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~----~~G~----~v~--~leeal--~ 249 (406)
T TIGR00936 183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAA----MDGF----RVM--TMEEAA--K 249 (406)
T ss_pred HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHH----hcCC----EeC--CHHHHH--h
Confidence 44444432 36799999999997 4444444443 66 799999883 322222 2232 222 222221 4
Q ss_pred ceeEEEEecchhhhcchhhHHHHH-HHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVI-TARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lv~ 216 (428)
..|+|++.. . -..++ .+....+|+|++++.
T Consensus 250 ~aDVVItaT-----G----~~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 250 IGDIFITAT-----G----NKDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred cCCEEEECC-----C----CHHHHHHHHHhcCCCCcEEEE
Confidence 679988732 1 12233 336678999998874
No 375
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=80.97 E-value=6.2 Score=38.13 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=55.7
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC----CcEEEEEcccccccCCCceeEEEEec
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT----DKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
++|+-+|+|. |.++..|++.|. .|+.++-+ +.++..++ .+|+. .....+......-...+.+|+|+...
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 4799999995 567888888876 79999987 55443322 12221 00011110000001125799988632
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
...+...+++.+...+.++..+++
T Consensus 79 ------K~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 79 ------KAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred ------CHHhHHHHHHHHHhhCCCCCEEEE
Confidence 223477788888899999887664
No 376
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=80.89 E-value=2.6 Score=40.98 Aligned_cols=95 Identities=26% Similarity=0.309 Sum_probs=54.3
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc----cccccCCCcee
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR----VEDVEIDEEVD 180 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~~~l~~~~~~D 180 (428)
....++.+||..|+|. |..+..+|+. |. +|+++..+ +....+++ .+....+.....+ +..+.....+|
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 3456788999998763 5566666665 66 78888777 66555533 2221111111111 11111224699
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+... .. ...+..+.+.|+++|.++.
T Consensus 230 ~vld~~-----g~----~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 230 VVIDAT-----GN----PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred EEEECC-----CC----HHHHHHHHHHHhcCCEEEE
Confidence 999632 11 2235566778899998873
No 377
>PRK10458 DNA cytosine methylase; Provisional
Probab=80.60 E-value=8.4 Score=39.58 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
..+++|+=||.|.+++-+-.+|..-|.++|++ ..++.-+.+... .....++.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC---DPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC---CCccceeccChhhCc
Confidence 45999999999999999988898888899999 544443333210 112345566776654
No 378
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=80.47 E-value=11 Score=38.03 Aligned_cols=94 Identities=22% Similarity=0.287 Sum_probs=52.9
Q ss_pred HhccCCCCCCEEEEEcCC-CcHH-HHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeE
Q 014247 105 MQNQSFIEGKVVVDVGCG-TGIL-SIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDV 181 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcG-tG~l-s~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~Dl 181 (428)
.+.+....+++||=||.| .|.+ +.++++.|..+|+.+--+ .+.|.+.+.+.+ ..++ .+.++.. -..+|+
T Consensus 170 ~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT--~erA~~La~~~~----~~~~--~l~el~~~l~~~Dv 241 (414)
T COG0373 170 KRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT--LERAEELAKKLG----AEAV--ALEELLEALAEADV 241 (414)
T ss_pred HHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHhC----Ceee--cHHHHHHhhhhCCE
Confidence 333444678999999999 6654 566677788888887766 333444444433 1222 2233222 167999
Q ss_pred EEEec-chhhhcchhhHHHHHHHHhc
Q 014247 182 IISEW-MGYMLLYESMLGSVITARDR 206 (428)
Q Consensus 182 Vvs~~-~~~~l~~~~~~~~~l~~~~~ 206 (428)
|||.. -.+......+.+..+....+
T Consensus 242 VissTsa~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 242 VISSTSAPHPIITREMVERALKIRKR 267 (414)
T ss_pred EEEecCCCccccCHHHHHHHHhcccC
Confidence 99964 11223333445555554433
No 379
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=80.35 E-value=10 Score=37.19 Aligned_cols=93 Identities=26% Similarity=0.337 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-------cccccCCCcee
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-------VEDVEIDEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~l~~~~~~D 180 (428)
.++.+||-.|+|. |..+..+|+. |+++|++++.+ +....++ ..+....+.....+ +.++.....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 4788899888642 3344445554 77689999887 5444432 23332111111111 11112225699
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+... + . ...+....+.|+++|+++.
T Consensus 252 ~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 252 VVIEAS-G----H----PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred EEEECC-C----C----hHHHHHHHHHhccCCEEEE
Confidence 998632 1 1 1234555678999998874
No 380
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.16 E-value=11 Score=36.24 Aligned_cols=94 Identities=23% Similarity=0.296 Sum_probs=55.1
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-----ccCCCc
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-----VEIDEE 178 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----l~~~~~ 178 (428)
.....++.+||.+|+|. |..+..+|+. |++.|++++.+ +....+++ .+.. .++..+-.+ ......
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCC
Confidence 34556788999998652 4455555665 66558899888 66655533 2321 222222111 112357
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+... + ....+....+.|+++|+++.
T Consensus 227 vd~v~~~~-~--------~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 227 FDVVIEAT-G--------VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred CcEEEECC-C--------ChHHHHHHHHHHhcCCEEEE
Confidence 99999632 1 12345566778899998874
No 381
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.16 E-value=12 Score=38.09 Aligned_cols=84 Identities=30% Similarity=0.351 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHH-HcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGT-GILSIFCA-QAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la-~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
..|++|+-+|+|. |......+ ..|+ +|+.+|.+ .....+.. .|. .+. ++.+.. ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~----~v~--~l~eal--~~aDVVI~aT- 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF----RVM--TMEEAA--ELGDIFVTAT- 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC----Eec--CHHHHH--hCCCEEEECC-
Confidence 5799999999986 33333333 3477 89999998 43322211 122 222 233321 4689998732
Q ss_pred hhhhcchhhHHHHHH-HHhcccccCeEEEc
Q 014247 188 GYMLLYESMLGSVIT-ARDRWLKRGGLILP 216 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~-~~~~~LkpgG~lv~ 216 (428)
. ...++. .....+|+|++++.
T Consensus 276 -------G-~~~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 276 -------G-NKDVITAEHMEAMKDGAILAN 297 (425)
T ss_pred -------C-CHHHHHHHHHhcCCCCCEEEE
Confidence 1 122333 56678999998874
No 382
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=80.07 E-value=3.3 Score=41.27 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecc
Q 014247 112 EGKVVVDVGCGT-GILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWM 187 (428)
Q Consensus 112 ~~~~VLDiGcGt-G~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~ 187 (428)
++.+|+-+|+|. |..+...++ .|+ +|+.+|.+ +-++.+.... + ..+.....+..++.. -..+|+|+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~- 238 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAV- 238 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcc-
Confidence 557899999983 444444444 377 79999998 5444332221 1 112211111122111 15789999743
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.......+.-+-++..+.++||++++
T Consensus 239 --~~~g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 239 --LIPGAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred --ccCCCCCCcCcCHHHHhcCCCCCEEE
Confidence 11111111111234445578888776
No 383
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=79.93 E-value=4.1 Score=39.92 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=53.4
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCce
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEV 179 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~ 179 (428)
.....++.+||-.|+|. |.++..+|+. |+.+|++++.+ +..+.+++ .+....+.....+. .++.....+
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCC
Confidence 33456788999988642 3344445554 77689999888 66555533 23211111111111 111112359
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+|+-.. + ....+....+.|+++|+++.
T Consensus 243 d~vid~~-g--------~~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 243 DVSFDCA-G--------VQATLDTAIDALRPRGTAVN 270 (351)
T ss_pred CEEEECC-C--------CHHHHHHHHHhccCCCEEEE
Confidence 9998632 1 11244566678999998874
No 384
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=79.92 E-value=7.8 Score=38.30 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=49.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE-cc---cccccCCCceeEE
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH-GR---VEDVEIDEEVDVI 182 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d---~~~l~~~~~~DlV 182 (428)
..++.+||-.|+|. |.++..+|+. |+ +|++++.+ +....+ +++.|.. .++. .+ +..+. +.+|+|
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~~--~~~D~v 251 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAAI--GTMDYI 251 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhhc--CCCCEE
Confidence 35788999998863 5566666665 66 78888877 432222 1223331 1221 11 11111 358988
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+-.. + -...+....+.|++||+++.
T Consensus 252 id~~-g--------~~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 252 IDTV-S--------AVHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred EECC-C--------CHHHHHHHHHHhcCCcEEEE
Confidence 8522 1 11234556678999998874
No 385
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=79.62 E-value=9 Score=35.89 Aligned_cols=93 Identities=27% Similarity=0.254 Sum_probs=53.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
....++.+||-.|||. |..+..+|++ |.++|++++.+ +....+++. +..+.+ +... ........+|+|+.
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~~~~~~~d~vl~ 165 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-ADEIGGRGADVVIE 165 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhhhcCCCCCEEEE
Confidence 3456788999998764 5555556665 66459999988 666555432 211111 1110 01112256899986
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.. .. ...+....+.|+++|.++.
T Consensus 166 ~~-----~~----~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 166 AS-----GS----PSALETALRLLRDRGRVVL 188 (277)
T ss_pred cc-----CC----hHHHHHHHHHhcCCcEEEE
Confidence 32 11 1244556677899998874
No 386
>PRK07063 short chain dehydrogenase; Provisional
Probab=79.56 E-value=10 Score=35.15 Aligned_cols=75 Identities=24% Similarity=0.351 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-.|++.|. ++..+++.|+ +|+.++.+ +.++...+.+...+...++.++.+|+.+...
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999987764 4555666687 79999988 6555555555442233458888888876321
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+.+|+++.+.
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 14689888754
No 387
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=79.54 E-value=6.3 Score=37.87 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=48.0
Q ss_pred EEEEcCCCcHHH-HHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc--------cCCCceeEEEEe
Q 014247 116 VVDVGCGTGILS-IFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV--------EIDEEVDVIISE 185 (428)
Q Consensus 116 VLDiGcGtG~ls-~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l--------~~~~~~DlVvs~ 185 (428)
=+|||.|...+- +.=++...-...++|+. -....|..++.+|+++..+.+++....+- ..+..||.+.|+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 378887764332 11122212267899999 66788999999999998888887644221 112569999998
Q ss_pred cc
Q 014247 186 WM 187 (428)
Q Consensus 186 ~~ 187 (428)
+.
T Consensus 186 PP 187 (419)
T KOG2912|consen 186 PP 187 (419)
T ss_pred Cc
Confidence 73
No 388
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=79.52 E-value=7.6 Score=38.05 Aligned_cols=44 Identities=27% Similarity=0.402 Sum_probs=31.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHH
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANE 152 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~ 152 (428)
....++.+||-.|||. |.++..+|++ |+ +|+++|.+ +..+.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 3456789999999965 5566666665 77 79999988 66655543
No 389
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.21 E-value=13 Score=35.38 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=57.1
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC--------CCC---------CcEEEEEcccccc
Q 014247 114 KVVVDVGCGTG--ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN--------NLT---------DKVIVLHGRVEDV 173 (428)
Q Consensus 114 ~~VLDiGcGtG--~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~l 173 (428)
.+|.-||+|.- .++..+++.|. +|+.+|.+ +.++.+++.+... .+. .++.+. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 46888999863 35566666676 89999999 7777766543211 110 123322 333321
Q ss_pred cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
-...|+|+... .........+++++...++++.++...
T Consensus 82 --~~~aDlVieav----pe~~~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 82 --VKDADLVIEAV----PEDPEIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred --hcCCCEEEEec----cCCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 14679998743 122233567778888888877766433
No 390
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=79.17 E-value=11 Score=37.08 Aligned_cols=96 Identities=22% Similarity=0.210 Sum_probs=53.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc--cc----ccccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG--RV----EDVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~----~~l~~~~~ 178 (428)
....++.+||-.|+|. |.++..+|+. |+++|++++.+ +..+.+++ .|...-+..... +. .++. .+.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~-~~~ 257 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT-GGG 257 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh-CCC
Confidence 4457889999998752 3444555555 77689999988 66655533 333211111110 01 1111 236
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
+|+++-.. + -...+....+.+++| |+++..
T Consensus 258 ~d~vid~~-G--------~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 258 VDYSFECT-G--------NIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred CCEEEECC-C--------ChHHHHHHHHHhhcCCCEEEEE
Confidence 89888522 1 123344455678896 888743
No 391
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.02 E-value=10 Score=36.21 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=57.5
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH-------CC-CC--------CcEEEEEccccccc
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA-------NN-LT--------DKVIVLHGRVEDVE 174 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~l~ 174 (428)
++|.-||+|. +.++..++++|. +|+.+|.+ +.++.+.+.+.. .+ +. .++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3678889985 235566677777 79999999 777776543221 11 00 112222 232221
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
-...|+|+... .........++.++.+.++|+.++.....+
T Consensus 79 -~~~aD~Vi~av----pe~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 -VADADLVIEAV----PEKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -hcCCCEEEEec----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 15679999643 122222456677788888888877554443
No 392
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=78.83 E-value=5.3 Score=33.46 Aligned_cols=72 Identities=25% Similarity=0.332 Sum_probs=44.7
Q ss_pred CCCCCCEEEEEcCCCc--HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-CCCceeEEEE
Q 014247 109 SFIEGKVVVDVGCGTG--ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-IDEEVDVIIS 184 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG--~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~DlVvs 184 (428)
...++++||-||+|-- .....++..|+++|+.+.-+ +-++...+.+. ...+.++. +.++. ....+|+|++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~----~~~~~~~~--~~~~~~~~~~~DivI~ 81 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG----GVNIEAIP--LEDLEEALQEADIVIN 81 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT----GCSEEEEE--GGGHCHHHHTESEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC----ccccceee--HHHHHHHHhhCCeEEE
Confidence 3467899999999742 24455566699899999988 54444333331 11355554 33433 1267999998
Q ss_pred ec
Q 014247 185 EW 186 (428)
Q Consensus 185 ~~ 186 (428)
..
T Consensus 82 aT 83 (135)
T PF01488_consen 82 AT 83 (135)
T ss_dssp -S
T ss_pred ec
Confidence 64
No 393
>PLN02494 adenosylhomocysteinase
Probab=78.82 E-value=8.3 Score=39.49 Aligned_cols=97 Identities=28% Similarity=0.365 Sum_probs=54.7
Q ss_pred HHHHHHHhccCC-CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 99 TYRAAIMQNQSF-IEGKVVVDVGCGT-GILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 99 ~~~~~i~~~~~~-~~~~~VLDiGcGt-G~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
...+.|.+.... ..|++|+-+|+|. |......++ .|+ +|+++|.+ .-...|.. .+. .+. ++.+.-
T Consensus 239 S~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal 307 (477)
T PLN02494 239 SLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGY----QVL--TLEDVV 307 (477)
T ss_pred cHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCC----eec--cHHHHH
Confidence 345555555332 6799999999996 433333333 377 79999988 33333321 222 222 233221
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
...|+|++.. + ...-+.......||+||+++.
T Consensus 308 --~~ADVVI~tT-G-------t~~vI~~e~L~~MK~GAiLiN 339 (477)
T PLN02494 308 --SEADIFVTTT-G-------NKDIIMVDHMRKMKNNAIVCN 339 (477)
T ss_pred --hhCCEEEECC-C-------CccchHHHHHhcCCCCCEEEE
Confidence 4679998732 1 111122455678999999884
No 394
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.63 E-value=5.8 Score=31.84 Aligned_cols=81 Identities=22% Similarity=0.210 Sum_probs=47.3
Q ss_pred CCCcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----C-CceeEEEEecchhhh
Q 014247 121 CGTGILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----D-EEVDVIISEWMGYML 191 (428)
Q Consensus 121 cGtG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----~-~~~DlVvs~~~~~~l 191 (428)
||.|.++..+++. +...|+.+|.+ +.++.+++. .+.++.+|..+... . .++|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 4555666666553 34489999999 776555432 26789999887432 1 6889888732
Q ss_pred cchhhHHHHHHHHhcccccCeEEE
Q 014247 192 LYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 192 ~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
. .......+....+-+.|...++
T Consensus 71 ~-~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 71 D-DDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp S-SHHHHHHHHHHHHHHTTTSEEE
T ss_pred C-CHHHHHHHHHHHHHHCCCCeEE
Confidence 1 1122223333445567776666
No 395
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=78.59 E-value=4.6 Score=39.85 Aligned_cols=91 Identities=24% Similarity=0.295 Sum_probs=51.4
Q ss_pred CCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc-------cccCCCce
Q 014247 110 FIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE-------DVEIDEEV 179 (428)
Q Consensus 110 ~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-------~l~~~~~~ 179 (428)
..++.+||-.|+| .|.++..+|+. |++.|++++.+ +..+.+++ .+.. .++..+-. .......+
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~~~ 257 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGRGV 257 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCCCC
Confidence 3577888877654 34444555554 77559999888 65554432 2321 22222111 11123569
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+|+... ... ..+....+.|+++|.++.
T Consensus 258 d~vld~v-----g~~----~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 258 DVVVEAL-----GKP----ETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CEEEEeC-----CCH----HHHHHHHHHHhcCCEEEE
Confidence 9999632 111 234556678999998874
No 396
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.36 E-value=14 Score=36.07 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=60.6
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHH-------HCCCC-----CcEEEEEcccccccCCCc
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVK-------ANNLT-----DKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~-------~~~~~-----~~v~~~~~d~~~l~~~~~ 178 (428)
++|--||+|+ ..++..++.+|. +|+..|.+ +.++.+++.+. +.++. .++++.. ++.+. -..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a--v~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC--VAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH--hcC
Confidence 5788999995 245666777788 89999999 76665544332 12211 1233321 22221 156
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.|+|+-. .......-..+++++.+.++|+.+|.-++.
T Consensus 84 aDlViEa----vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 84 ADFIQES----APEREALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred CCEEEEC----CcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 7998864 334444466778899999999986554443
No 397
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=78.31 E-value=5.2 Score=39.43 Aligned_cols=93 Identities=24% Similarity=0.294 Sum_probs=53.6
Q ss_pred cCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-------cccccCCC
Q 014247 108 QSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-------VEDVEIDE 177 (428)
Q Consensus 108 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~l~~~~ 177 (428)
....++.+||-.|+| .|..+..+++. |+.+|++++.+ ...+.++ ..+.. .++..+ +..+....
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~----~~g~~---~vv~~~~~~~~~~l~~~~~~~ 250 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR----RFGAT---HTVNASEDDAVEAVRDLTDGR 250 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HhCCe---EEeCCCCccHHHHHHHHcCCC
Confidence 345678899988875 34455555655 77569999887 5544442 22331 222211 11122235
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+|+++... .. ...+....+.|+++|+++.
T Consensus 251 ~vd~vld~~-----~~----~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 251 GADYAFEAV-----GR----AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred CCCEEEEcC-----CC----hHHHHHHHHHhhcCCeEEE
Confidence 699988632 10 2345666778999998874
No 398
>PRK06701 short chain dehydrogenase; Provisional
Probab=78.20 E-value=24 Score=33.55 Aligned_cols=73 Identities=23% Similarity=0.397 Sum_probs=45.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-D-IAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ . ......+.+...+ .++.++.+|+.+...
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 567899999987764 4555566677 78888765 2 2333333333332 357888899866321
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-+++|+||.+.
T Consensus 121 ~~~~iD~lI~~A 132 (290)
T PRK06701 121 ELGRLDILVNNA 132 (290)
T ss_pred HcCCCCEEEECC
Confidence 14689888643
No 399
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=78.12 E-value=5.9 Score=38.58 Aligned_cols=50 Identities=30% Similarity=0.415 Sum_probs=38.3
Q ss_pred HHhccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHH
Q 014247 104 IMQNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEV 153 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~ 153 (428)
+....+..+|.+|.-+|||- |..+..-|+. |+.+++++|++ .-++.|++.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 34445667899999999985 6666666664 89999999999 777777653
No 400
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=77.91 E-value=6.9 Score=32.42 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=41.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCc-HHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCC--
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTG-ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID-- 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG-~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-- 176 (428)
+.+.|.+. .+..+|++||-|.= ..+..|+++|. .|+++|+.+. .+. ..+.++..|+.+-.+.
T Consensus 4 ~a~~ia~~---~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-----~g~~~v~DDif~P~l~iY 68 (127)
T PF03686_consen 4 FAEYIARL---NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-----EGVNFVVDDIFNPNLEIY 68 (127)
T ss_dssp HHHHHHHH---S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHH
T ss_pred HHHHHHHh---CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-----cCcceeeecccCCCHHHh
Confidence 44555544 23459999999974 36677777887 8999999933 111 2367888898874433
Q ss_pred CceeEEEEe
Q 014247 177 EEVDVIISE 185 (428)
Q Consensus 177 ~~~DlVvs~ 185 (428)
...|+|.|-
T Consensus 69 ~~a~lIYSi 77 (127)
T PF03686_consen 69 EGADLIYSI 77 (127)
T ss_dssp TTEEEEEEE
T ss_pred cCCcEEEEe
Confidence 789999983
No 401
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.90 E-value=17 Score=31.96 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=23.8
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 115 VVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 115 ~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
+||-+|||. | ..+..+++.|..+++.+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 478899984 4 36777888899889998876
No 402
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.88 E-value=25 Score=33.41 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHH-------HHCCC-C--------CcEEEEEccccccc
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVV-------KANNL-T--------DKVIVLHGRVEDVE 174 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~-------~~~~~-~--------~~v~~~~~d~~~l~ 174 (428)
.+|--||+|. +.++..+++.|. +|+++|.+ +.++.+++.+ .+.+. . .++.+. .|...+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~~~- 80 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLDDL- 80 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh-
Confidence 3577889985 456667777777 89999999 7776554322 22221 1 123322 333222
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
...|+|+-.. .........++.++.+.++|+..+.-.+.
T Consensus 81 --~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 81 --KDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred --ccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 5689988632 12222245888889899999987754443
No 403
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=77.87 E-value=16 Score=34.92 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=47.8
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC-CCCCcEEEEEccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN-NLTDKVIVLHGRVED 172 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~ 172 (428)
..+...+.+.....++++||-+|+| |. .+..+++.|+++|+.++.+ +..+.+++..+.. .....+.+...|+.+
T Consensus 111 ~G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~ 189 (289)
T PRK12548 111 LGFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLND 189 (289)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhh
Confidence 3455555544333567899999997 53 2333456688789999887 3333333332211 011123344445543
Q ss_pred cc---C-CCceeEEEEec
Q 014247 173 VE---I-DEEVDVIISEW 186 (428)
Q Consensus 173 l~---~-~~~~DlVvs~~ 186 (428)
.. . -..+|+||...
T Consensus 190 ~~~~~~~~~~~DilINaT 207 (289)
T PRK12548 190 TEKLKAEIASSDILVNAT 207 (289)
T ss_pred hhHHHhhhccCCEEEEeC
Confidence 21 1 14679998865
No 404
>PRK08324 short chain dehydrogenase; Validated
Probab=77.70 E-value=16 Score=39.68 Aligned_cols=72 Identities=26% Similarity=0.297 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
.++++||-.|++.|. ++..+++.|+ +|+++|.+ .-+..+.+.+... .++.++.+|+.+...
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999976543 3444555677 89999998 5555444433221 358888888765321
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+.+|+|+.+.
T Consensus 496 ~g~iDvvI~~A 506 (681)
T PRK08324 496 FGGVDIVVSNA 506 (681)
T ss_pred cCCCCEEEECC
Confidence 14689998854
No 405
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=77.38 E-value=13 Score=37.48 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=33.1
Q ss_pred CCCCCCEEEEEc-CC-CcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHH
Q 014247 109 SFIEGKVVVDVG-CG-TGILSIFCAQA---GAKRVYAVDAS-DIAVQANEV 153 (428)
Q Consensus 109 ~~~~~~~VLDiG-cG-tG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~ 153 (428)
...++.+||-+| +| .|.++..+|++ |+.+|+++|.+ .-++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 446788999997 34 57777777775 45689999999 777777664
No 406
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.31 E-value=12 Score=36.03 Aligned_cols=168 Identities=12% Similarity=0.109 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCC--CCcEEEEEcccc
Q 014247 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNL--TDKVIVLHGRVE 171 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~--~~~v~~~~~d~~ 171 (428)
..|...+-+.+.+.+... -..|+-+|||-=.-+..+-.....+|+-+|.-+.++.=++.+.+.+. ...++++..|+.
T Consensus 75 a~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~ 153 (297)
T COG3315 75 AARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLR 153 (297)
T ss_pred HHHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEecccc
Confidence 355566666666665433 57899999996443333322211367777777777776666766653 235899999988
Q ss_pred cccC----------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC--eeeEeecCCccchhhh----
Q 014247 172 DVEI----------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA--TLYMAPVTHPDRYSES---- 235 (428)
Q Consensus 172 ~l~~----------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~~~~~~---- 235 (428)
+-.. +..--+++++.+..++. +.....++..+...+.||-.++.... ................
T Consensus 154 ~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~-~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (297)
T COG3315 154 EDDWPQALAAAGFDRSRPTLWIAEGLLMYLP-EEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGED 232 (297)
T ss_pred ccchHHHHHhcCCCcCCCeEEEeccccccCC-HHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccc
Confidence 4221 24455888888654444 44488999999998888888776542 1000000000000000
Q ss_pred hhhhhc-cCCCCcchhHHHHHhcCCCCce
Q 014247 236 IDFWRN-VYGIDMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 236 ~~~~~~-~~~~~~~~l~~~l~~~Gf~~~~ 263 (428)
.....- ..+.+...+..++.+.||....
T Consensus 233 ~~~~e~~~~~~~~~e~~~~l~~~g~~~~~ 261 (297)
T COG3315 233 LDRGELVYFGDDPAEIETWLAERGWRSTL 261 (297)
T ss_pred cccccceeccCCHHHHHHHHHhcCEEEEe
Confidence 001111 2345578888999999987543
No 407
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=76.91 E-value=32 Score=32.61 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC-CCcEEEEEccccccc----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL-TDKVIVLHGRVEDVE---------- 174 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~l~---------- 174 (428)
...++++|--|.++|. .+..+++.|+ +|+.++.+ +.++...+.....+. ..++..+.+|+.+.+
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 3678899999998885 5788888888 89999988 766665555444443 356888888886532
Q ss_pred --CCCceeEEEEec
Q 014247 175 --IDEEVDVIISEW 186 (428)
Q Consensus 175 --~~~~~DlVvs~~ 186 (428)
+.++.|+++.+.
T Consensus 84 ~~~~GkidiLvnna 97 (270)
T KOG0725|consen 84 EKFFGKIDILVNNA 97 (270)
T ss_pred HHhCCCCCEEEEcC
Confidence 137899999865
No 408
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.89 E-value=25 Score=33.56 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=59.2
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC-------CC-C--------CcEEEEEccccccc
Q 014247 114 KVVVDVGCGTG--ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN-------NL-T--------DKVIVLHGRVEDVE 174 (428)
Q Consensus 114 ~~VLDiGcGtG--~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~-------~~-~--------~~v~~~~~d~~~l~ 174 (428)
.+|.=||+|.- .++..+++.|. +|+.+|.+ +.++.+.+.+..+ +. . .++++. .+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh-
Confidence 56888999863 35666677777 89999999 7776655433221 21 1 123322 233322
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
...|+|+... .........+++.+...++++.+++-.+.+
T Consensus 82 --~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 82 --ADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred --cCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 4679988732 222233556778888889998877644433
No 409
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=76.87 E-value=15 Score=33.06 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh--HH------------------HHHHHHHHHHCCCCCcEEEEEcc
Q 014247 112 EGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS--DI------------------AVQANEVVKANNLTDKVIVLHGR 169 (428)
Q Consensus 112 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 169 (428)
...+||=+|||. | ..+..|+..|.++++.+|.. +. ++.+.+.+++.+..-+++.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 457899999985 2 35566777799999999865 11 23334444443333345555444
Q ss_pred cccccC--CCceeEEEEec
Q 014247 170 VEDVEI--DEEVDVIISEW 186 (428)
Q Consensus 170 ~~~l~~--~~~~DlVvs~~ 186 (428)
+.+... -..||+|++..
T Consensus 100 ~~~~~~~~~~~~dvVi~~~ 118 (197)
T cd01492 100 ISEKPEEFFSQFDVVVATE 118 (197)
T ss_pred ccccHHHHHhCCCEEEECC
Confidence 432211 16899999743
No 410
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.83 E-value=19 Score=34.34 Aligned_cols=93 Identities=23% Similarity=0.272 Sum_probs=56.7
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC----------CC---------CCcEEEEEcccc
Q 014247 114 KVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN----------NL---------TDKVIVLHGRVE 171 (428)
Q Consensus 114 ~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~----------~~---------~~~v~~~~~d~~ 171 (428)
.+|.-||+|. | .++..+++.|. +|+.+|.+ +.++.+++.+... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899995 2 45666777777 89999999 7777665543321 11 0112221 1221
Q ss_pred cccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 172 DVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 172 ~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.+ ...|+|+... .........+++++...++|+.+++
T Consensus 82 ~~---~~aDlVieav----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 SL---SDADFIVEAV----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred Hh---CCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 11 4579988642 2222335777888888888887765
No 411
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=76.67 E-value=6.2 Score=38.41 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=55.6
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cc----ccccCC
Q 014247 106 QNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RV----EDVEID 176 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~----~~l~~~ 176 (428)
......+|.+||-.|+ |.|.++..+|+. |+ +|++++.+ +..+.+++. .|....+..-.. +. .... .
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~-~ 219 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF-P 219 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC-C
Confidence 3345578999999987 356666667765 77 79888877 655555432 233211111111 21 1111 2
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+|+|+-.. + . ..+....+.|+++|+++.
T Consensus 220 ~gvd~v~d~~-g----~-----~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 220 NGIDIYFDNV-G----G-----KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred CCcEEEEECC-C----H-----HHHHHHHHHhccCcEEEE
Confidence 5689998532 1 1 234556678999999874
No 412
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=76.36 E-value=20 Score=34.53 Aligned_cols=93 Identities=28% Similarity=0.264 Sum_probs=54.4
Q ss_pred cCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEE
Q 014247 108 QSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVI 182 (428)
Q Consensus 108 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlV 182 (428)
....++.+||-+||| .|..+..+++. |. +|++++.+ ...+.+++ .+.. .++...-.... ..+.+|++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARK----LGAD---EVVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----hCCc---EEeccCCcchHHhccCCCCEE
Confidence 345678899999987 56666666666 66 79999888 66555432 2221 11111110000 12468998
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+... . -...+..+.+.|+++|.++..
T Consensus 230 i~~~-----~----~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 230 LVTV-----V----SGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EECC-----C----cHHHHHHHHHhcccCCEEEEE
Confidence 8632 1 112445567789999988743
No 413
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=76.16 E-value=15 Score=32.75 Aligned_cols=99 Identities=21% Similarity=0.222 Sum_probs=50.1
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHH------------HHHHCCCCCcEEEEEcccccccCCCce
Q 014247 115 VVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS-DIAVQANE------------VVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 115 ~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s-~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
+|--+|.|- | .++..+|+.|. +|+|+|++ +.++...+ .+++..-..++.+. .|..... ...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai--~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI--KDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH--HH-
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh--hcc
Confidence 566777775 3 25566677787 99999999 65544321 11111001223332 2322211 457
Q ss_pred eEEEEecch----hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 180 DVIISEWMG----YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 180 DlVvs~~~~----~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+++..... ..-.....+.++++.+...|+++..+++.
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 877764310 01112234788899999999997777754
No 414
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=75.92 E-value=15 Score=34.98 Aligned_cols=83 Identities=20% Similarity=0.172 Sum_probs=48.9
Q ss_pred EEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhh
Q 014247 115 VVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYML 191 (428)
Q Consensus 115 ~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l 191 (428)
+|.=||+|. |.++..+++.|. +|+++|.+ ..++.+.+ .+. +.....+.. .-...|+|+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~~---~~~~aDlVilav----- 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE----RGL---VDEASTDLS---LLKDCDLVILAL----- 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CCC---cccccCCHh---HhcCCCEEEEcC-----
Confidence 567788885 456666667766 89999999 66555433 222 111111221 125689998743
Q ss_pred cchhhHHHHHHHHhcccccCeEE
Q 014247 192 LYESMLGSVITARDRWLKRGGLI 214 (428)
Q Consensus 192 ~~~~~~~~~l~~~~~~LkpgG~l 214 (428)
.......+++++...++++.++
T Consensus 66 -p~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 66 -PIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred -CHHHHHHHHHHHHHhCCCCcEE
Confidence 1233455677777777776544
No 415
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.90 E-value=17 Score=36.06 Aligned_cols=75 Identities=28% Similarity=0.287 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh--H------------------HHHHHHHHHHHCCCCCcEEEEEc
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS--D------------------IAVQANEVVKANNLTDKVIVLHG 168 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s--~------------------~~~~a~~~~~~~~~~~~v~~~~~ 168 (428)
....+||-+|||. | ..+..|+..|.++++.+|.+ + -++.|.+++++.+-.-+++.+..
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 3557999999994 3 46677888899999988865 1 23334445544433334555544
Q ss_pred ccccc---cCCCceeEEEEe
Q 014247 169 RVEDV---EIDEEVDVIISE 185 (428)
Q Consensus 169 d~~~l---~~~~~~DlVvs~ 185 (428)
.+..- .+-..+|+|+..
T Consensus 106 ~i~~~~~~~~~~~~DvVvd~ 125 (355)
T PRK05597 106 RLTWSNALDELRDADVILDG 125 (355)
T ss_pred ecCHHHHHHHHhCCCEEEEC
Confidence 44321 122679999984
No 416
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=75.88 E-value=7.4 Score=32.94 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=51.5
Q ss_pred EEEEcCCC-c-HHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcc----------cccc-cCCCceeEE
Q 014247 116 VVDVGCGT-G-ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGR----------VEDV-EIDEEVDVI 182 (428)
Q Consensus 116 VLDiGcGt-G-~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d----------~~~l-~~~~~~DlV 182 (428)
|+-+|+|. | .++..|++.|. +|+.+.-.+.++. ++.++ +.+...+ .... .....+|+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~~~~----~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPRLEA----IKEQG----LTITGPDGDETVQPPIVISAPSADAGPYDLV 71 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHHHHH----HHHHC----EEEEETTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccccHHh----hhhee----EEEEecccceecccccccCcchhccCCCcEE
Confidence 46678875 2 35556666666 8999998862222 22332 2222222 1111 112789999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+... ...+.+.+++.+.+.+.++..+++
T Consensus 72 iv~v------Ka~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 72 IVAV------KAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp EE-S------SGGGHHHHHHHHCTGEETTEEEEE
T ss_pred EEEe------cccchHHHHHHHhhccCCCcEEEE
Confidence 9632 334578889999999999977664
No 417
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=75.77 E-value=11 Score=41.19 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=67.5
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC-------C-CC--------CcEEEEEccccccc
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN-------N-LT--------DKVIVLHGRVEDVE 174 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~l~ 174 (428)
.+|--||+|+ +.++..++.+|. .|+.+|.+ +.++.+.+++... + +. .++++. .|...+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF- 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh-
Confidence 5799999997 345666777787 89999999 8888876655432 1 11 233332 233222
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
...|+|+=. +......-.++++++..+++|+.+|.-++.++
T Consensus 413 --~~aDlViEA----v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl 453 (737)
T TIGR02441 413 --KNADMVIEA----VFEDLSLKHKVIKEVEAVVPPHCIIASNTSAL 453 (737)
T ss_pred --ccCCeehhh----ccccHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 568888842 45555667889999999999999887665544
No 418
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=75.66 E-value=10 Score=39.86 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=47.9
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHH----HHHcCCCeEEEEeCh-HHHHHHHHHHHHC-----C--CCCcEEEEEcccccc
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIF----CAQAGAKRVYAVDAS-DIAVQANEVVKAN-----N--LTDKVIVLHGRVEDV 173 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~----la~~g~~~V~giD~s-~~~~~a~~~~~~~-----~--~~~~v~~~~~d~~~l 173 (428)
+......+++||-.|+. |.++.. |++.|+ +|++++.+ .-+....+.+... + ...++.++.+|+.+.
T Consensus 73 ~~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~ 150 (576)
T PLN03209 73 KELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKP 150 (576)
T ss_pred cccccCCCCEEEEECCC-CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCH
Confidence 34445678889988875 344433 445576 89999887 5444333322221 1 123588999998864
Q ss_pred cC----CCceeEEEEec
Q 014247 174 EI----DEEVDVIISEW 186 (428)
Q Consensus 174 ~~----~~~~DlVvs~~ 186 (428)
.. -+.+|+||+..
T Consensus 151 esI~~aLggiDiVVn~A 167 (576)
T PLN03209 151 DQIGPALGNASVVICCI 167 (576)
T ss_pred HHHHHHhcCCCEEEEcc
Confidence 32 15789988753
No 419
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=75.26 E-value=7 Score=38.07 Aligned_cols=93 Identities=27% Similarity=0.282 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc---ccccCCCceeEEEE
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV---EDVEIDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~---~~l~~~~~~DlVvs 184 (428)
.++.+||-.|+|. |.++..+++. |..+|++++.+ .-...+++ .+....+.....+. .++...+.+|+|+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCCCCCCEEEE
Confidence 5778888877653 4455556665 66578888766 44333332 23211111111111 22222357999996
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.. .. ......+.+.|+++|.++.
T Consensus 238 ~~-----g~----~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 238 MS-----GN----PKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CC-----CC----HHHHHHHHHHhccCCEEEE
Confidence 32 11 1234455678899998874
No 420
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=75.23 E-value=9.7 Score=38.03 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=30.9
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHH
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQA 150 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a 150 (428)
.+.+...++.+||-|..|-. .++.++..++++|++||+| .+....
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~-N~L~yL~~~P~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGC-NALDYLLAGPKRIHAVDLNPAQNALL 73 (380)
T ss_pred HHHhCCCCCCeEEEEccCCc-hHHHHHhcCCceEEEEeCCHHHHHHH
Confidence 34566789999999955543 3333444567899999999 555443
No 421
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=75.04 E-value=14 Score=32.02 Aligned_cols=84 Identities=23% Similarity=0.225 Sum_probs=50.2
Q ss_pred EEEEEcCCCc--HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhh
Q 014247 115 VVVDVGCGTG--ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYML 191 (428)
Q Consensus 115 ~VLDiGcGtG--~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l 191 (428)
+|-=||+|.= .++..|++.|. .|++.|.+ +.++.+.+ .+ ++.. .+..++. ...|+|++ ++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~----~g----~~~~-~s~~e~~--~~~dvvi~-----~v 65 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAE----AG----AEVA-DSPAEAA--EQADVVIL-----CV 65 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHH----TT----EEEE-SSHHHHH--HHBSEEEE------S
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHH----hh----hhhh-hhhhhHh--hcccceEe-----ec
Confidence 4566777752 34555666677 89999998 55443322 22 3332 3444432 45699998 45
Q ss_pred cchhhHHHHHHH--HhcccccCeEEE
Q 014247 192 LYESMLGSVITA--RDRWLKRGGLIL 215 (428)
Q Consensus 192 ~~~~~~~~~l~~--~~~~LkpgG~lv 215 (428)
........++.. +...|++|..++
T Consensus 66 ~~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 66 PDDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp SSHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred ccchhhhhhhhhhHHhhccccceEEE
Confidence 555567788887 778888887776
No 422
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.82 E-value=17 Score=34.75 Aligned_cols=98 Identities=14% Similarity=0.290 Sum_probs=61.6
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH-------CCCC---------CcEEEEEccccccc
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA-------NNLT---------DKVIVLHGRVEDVE 174 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~-------~~~~---------~~v~~~~~d~~~l~ 174 (428)
.+|--||+|+ +.++..++..|. .|+..|.+ +.++.+++++.. .+.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 4788899996 346666777787 89999999 887776655332 1110 12322 2333222
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhccc-ccCeEEEccCCe
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWL-KRGGLILPSYAT 220 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lv~~~~~ 220 (428)
...|+|+-. .......-..++..+...+ +|+.++.-++..
T Consensus 83 --~~~d~ViEa----v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 --ADRQLVIEA----VVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred --CCCCEEEEe----cccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 568999864 3444444566778888888 778777654443
No 423
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=74.67 E-value=26 Score=29.32 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=22.5
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 115 VVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 115 ~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
+||=+|||. | ..+..|++.|.++++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 478899983 4 35667777899899999754
No 424
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=74.67 E-value=9.2 Score=37.78 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=53.0
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc--c----cccccCCC
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG--R----VEDVEIDE 177 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d----~~~l~~~~ 177 (428)
.....++.+||-.|+|. |.++..+|+. |+..|++++.+ ...+.+++ .+....+..... + +.++. .+
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~-~~ 252 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT-DG 252 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-CC
Confidence 34456788999887753 3444445554 77678999977 66555533 232211111111 1 11112 35
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccc-cCeEEEc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLK-RGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~lv~ 216 (428)
.+|+|+... + . ...+....+.|+ ++|+++.
T Consensus 253 ~~d~vid~~-g----~----~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 253 GVDYAFEVI-G----S----ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CCcEEEECC-C----C----HHHHHHHHHHhccCCCEEEE
Confidence 689998521 1 1 123445567788 9998874
No 425
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=74.58 E-value=8.4 Score=37.63 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc----cc--CCCceeE
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED----VE--IDEEVDV 181 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----l~--~~~~~Dl 181 (428)
.++.+||-.|+|. |..+..+|+. |+++|++++.+ .....+.+ .+.. .++..+-.. +. ..+.+|+
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVDA 246 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCcE
Confidence 3678899887653 4455555555 78789999988 65555432 2331 222211111 10 1136899
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+... + . ...+....+.|+++|.++.
T Consensus 247 vid~~-g----~----~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 247 VIDFV-N----N----SATASLAFDILAKGGKLVL 272 (350)
T ss_pred EEECC-C----C----HHHHHHHHHHhhcCCeEEE
Confidence 98632 1 1 1235566778899998874
No 426
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=74.57 E-value=20 Score=34.76 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=25.7
Q ss_pred CCCCCEEEEEcCCC-cHHH-HHHHHcCCCeEEEEeCh-HHH
Q 014247 110 FIEGKVVVDVGCGT-GILS-IFCAQAGAKRVYAVDAS-DIA 147 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls-~~la~~g~~~V~giD~s-~~~ 147 (428)
..++.+|+-+|+|. |... ..+...|+.+|+.++.+ +-.
T Consensus 175 ~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra 215 (311)
T cd05213 175 NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA 215 (311)
T ss_pred CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 35789999999975 3332 22333477789999998 443
No 427
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=74.35 E-value=17 Score=39.59 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=67.9
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC-------C-CC--------CcEEEEEccccccc
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN-------N-LT--------DKVIVLHGRVEDVE 174 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~l~ 174 (428)
.+|.-||+|+ ..++..+|.+|. .|+.+|.+ +.++.+++.+... + +. .++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 5799999998 356777888888 89999999 8887766554321 1 11 234433 233222
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
...|+|+=. +......-.+++.++.++++|+.+|.-.+.++.
T Consensus 391 --~~aDlViEa----v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~ 432 (715)
T PRK11730 391 --ERVDVVVEA----VVENPKVKAAVLAEVEQKVREDTILASNTSTIS 432 (715)
T ss_pred --cCCCEEEec----ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 568988853 445555677899999999999988876655443
No 428
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=74.23 E-value=17 Score=33.79 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=26.4
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
..+.+||-+|||. | ..+..|++.|.++++.+|.+
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3457899999984 4 46777888899999988865
No 429
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=74.19 E-value=10 Score=37.87 Aligned_cols=68 Identities=25% Similarity=0.340 Sum_probs=47.3
Q ss_pred CEEEEEcCCC-cH-HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----CCceeEEEEec
Q 014247 114 KVVVDVGCGT-GI-LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----DEEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGt-G~-ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----~~~~DlVvs~~ 186 (428)
++||-||||. |. .+..+|+.+..+|+..|.+ +.+..+...... +++.++.|+.+.+. -..+|+|++..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 5799999964 22 3444566675699999999 777665544221 58889999887632 25679999854
No 430
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=74.08 E-value=20 Score=34.35 Aligned_cols=71 Identities=23% Similarity=0.319 Sum_probs=43.3
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh--HH------------------HHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 115 VVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS--DI------------------AVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 115 ~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
+||-||||- | .++..|+..|.++++.+|.+ +. ++.|.+.+.+.+..-+++....++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 488899983 3 35666777899999998854 11 22233334333333346666666654
Q ss_pred ccC--CCceeEEEEe
Q 014247 173 VEI--DEEVDVIISE 185 (428)
Q Consensus 173 l~~--~~~~DlVvs~ 185 (428)
... -..||+|++.
T Consensus 81 ~~~~f~~~fdvVi~a 95 (291)
T cd01488 81 KDEEFYRQFNIIICG 95 (291)
T ss_pred hhHHHhcCCCEEEEC
Confidence 322 2789999983
No 431
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=74.05 E-value=8.2 Score=38.45 Aligned_cols=96 Identities=25% Similarity=0.235 Sum_probs=52.0
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc---c----cccccCCCc
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG---R----VEDVEIDEE 178 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d----~~~l~~~~~ 178 (428)
...++.+||-.|+|. |..+..+|+. |+.+|++++.+ +..+.+ +..+....+..... + +..+.....
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~----~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~g 275 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLA----KEMGADYVFNPTKMRDCLSGEKVMEVTKGWG 275 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----HHcCCCEEEcccccccccHHHHHHHhcCCCC
Confidence 456788888887753 3344445554 76689999988 533333 33343211111110 1 112222256
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+... + .....+....+.|+++|+++.
T Consensus 276 vDvvld~~-g-------~~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 276 ADIQVEAA-G-------APPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred CCEEEECC-C-------CcHHHHHHHHHHHHcCCEEEE
Confidence 99998632 1 112345556677889998874
No 432
>PRK05867 short chain dehydrogenase; Provisional
Probab=73.93 E-value=17 Score=33.58 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..++++|-.|++.|. ++..+++.|+ +|+.++.+ +.++...+.+...+ .++.++.+|+.+...
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999987764 4555666687 79999988 65555555444433 357788888765321
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+++|+++.+.
T Consensus 84 ~g~id~lv~~a 94 (253)
T PRK05867 84 LGGIDIAVCNA 94 (253)
T ss_pred hCCCCEEEECC
Confidence 14789988754
No 433
>PRK08339 short chain dehydrogenase; Provisional
Probab=73.88 E-value=18 Score=33.80 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------C
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------D 176 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~ 176 (428)
..++++|-.|++.|. ++..+++.|+ +|+.++.+ +-++.+.+.+.... ..++.++.+|+.+... -
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 467899999988774 5566677788 79999988 55555444443321 2358888888876421 1
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
+..|+++.+.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 4688888753
No 434
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.53 E-value=17 Score=39.60 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=66.8
Q ss_pred CEEEEEcCCC--cHHHHHHH-HcCCCeEEEEeCh-HHHHHHHHHHHHC-------C-CC--------CcEEEEEcccccc
Q 014247 114 KVVVDVGCGT--GILSIFCA-QAGAKRVYAVDAS-DIAVQANEVVKAN-------N-LT--------DKVIVLHGRVEDV 173 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la-~~g~~~V~giD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~l 173 (428)
++|.-||+|+ ..++..++ ..|. .|+.+|.+ +.++.+++++... + +. .++++. .|...+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHHh
Confidence 6899999998 34566666 6677 89999999 8777776554321 1 11 234433 222222
Q ss_pred cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
...|+|+=. +......-.+++.++.+.++|+.+|.-.+.++.
T Consensus 388 ---~~aDlViEa----v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~ 429 (708)
T PRK11154 388 ---KHADVVIEA----VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLP 429 (708)
T ss_pred ---ccCCEEeec----ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 568988853 455555678899999999999998876655443
No 435
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=73.38 E-value=18 Score=34.78 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=50.0
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.+|.=||+|. +.++..+++.|. .+|+++|.+ +.++.++ ..+... . ...+..+. -...|+|+....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~~~--~-~~~~~~~~--~~~aDvViiavp-- 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGLGD--R-VTTSAAEA--VKGADLVILCVP-- 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCCCc--e-ecCCHHHH--hcCCCEEEECCC--
Confidence 5788999886 234555555564 489999999 6554443 233211 1 11222221 146899987431
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
......++..+...+++|+.++
T Consensus 76 ----~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 76 ----VGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ----HHHHHHHHHHHHhhCCCCCEEE
Confidence 1224556666767788887554
No 436
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=73.34 E-value=18 Score=34.47 Aligned_cols=88 Identities=25% Similarity=0.216 Sum_probs=51.1
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCC-eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAK-RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~-~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.+|+=+|.|- |.++..+.+.|.. .+++.|.+ ..+..+.+. ++.+ -..+..........|+|+...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~d----~~~~~~~~~~~~~aD~Vivav--- 72 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVID----ELTVAGLAEAAAEADLVIVAV--- 72 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cccc----ccccchhhhhcccCCEEEEec---
Confidence 5788888774 4566666666654 47888888 555544322 2211 110100011225689988643
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.......+++++...|++|..+.
T Consensus 73 ---Pi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 73 ---PIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ---cHHHHHHHHHHhcccCCCCCEEE
Confidence 22346778888888888887665
No 437
>PRK07062 short chain dehydrogenase; Provisional
Probab=73.24 E-value=19 Score=33.48 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..++++|-.|++.|. ++..+++.|+ +|+.++.+ +-++.+.+.+....-..++.++..|+.+...
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999988764 4555666677 79999988 5555544444332222357788888876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+++|+++.+.
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 15689888754
No 438
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=73.20 E-value=22 Score=33.23 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
....+||-+|||. | ..+..|++.|.++++.+|.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4567999999973 3 35667777899899988765
No 439
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.65 E-value=15 Score=35.11 Aligned_cols=75 Identities=31% Similarity=0.370 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-=||-+|+ ++..++++|+ +++-+-.. +-++...+.+++.+-.+++.++++|+.+...
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 467899999999986 6777888888 45555444 5555543333433332369999999987632
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+..|++|.+.
T Consensus 89 fg~vDvLVNNA 99 (282)
T KOG1205|consen 89 FGRVDVLVNNA 99 (282)
T ss_pred cCCCCEEEecC
Confidence 17899999875
No 440
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=72.60 E-value=14 Score=35.59 Aligned_cols=104 Identities=18% Similarity=0.101 Sum_probs=61.0
Q ss_pred CEEEEEcCCCcHHHHHHHHc-------CC--------------CeEEEEeCh---HHHHHHHHHHHHC-----------C
Q 014247 114 KVVVDVGCGTGILSIFCAQA-------GA--------------KRVYAVDAS---DIAVQANEVVKAN-----------N 158 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~-------g~--------------~~V~giD~s---~~~~~a~~~~~~~-----------~ 158 (428)
.+||.||.|-|.=...+|.. .. -.|+.||+. ..+......+..+ .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 69999999997532222221 00 179999997 3444444443333 0
Q ss_pred -C----CCcEEEEEcccccccCC--------CceeEEEEecchhhhc--chhhHHHHHHHHhcccccCeEEEcc
Q 014247 159 -L----TDKVIVLHGRVEDVEID--------EEVDVIISEWMGYMLL--YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 159 -~----~~~v~~~~~d~~~l~~~--------~~~DlVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. .-++.|.+.|+..+..+ ...++|......+-|. ....--.+|..+...++||..+++-
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 1 11478899998776542 1355555422112222 2234567899999999999977653
No 441
>PRK06914 short chain dehydrogenase; Provisional
Probab=72.49 E-value=19 Score=33.76 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------CCc
Q 014247 113 GKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------DEE 178 (428)
Q Consensus 113 ~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 178 (428)
++++|-.|++.|. ++..+++.|+ +|++++-+ +.+....+.....+...++.++.+|+.+... -++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4678999876653 3444556677 79999877 5444444433433444568899999876321 146
Q ss_pred eeEEEEec
Q 014247 179 VDVIISEW 186 (428)
Q Consensus 179 ~DlVvs~~ 186 (428)
.|.|+.+.
T Consensus 82 id~vv~~a 89 (280)
T PRK06914 82 IDLLVNNA 89 (280)
T ss_pred eeEEEECC
Confidence 78888753
No 442
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=72.48 E-value=18 Score=36.01 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
..+.+||-+|||. | ..+..|++.|.++++.+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3567899999983 4 36677788899999999875
No 443
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=72.40 E-value=24 Score=32.59 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 112 EGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 112 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
...+||-+|||. | ..+..|++.|..+++.+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 457899999983 4 35667788899999999854
No 444
>PRK08223 hypothetical protein; Validated
Probab=72.25 E-value=13 Score=35.53 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
.+..+||-+|||- | ..+..||++|.++++.+|.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3567899999994 4 46888899999989888865
No 445
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=71.73 E-value=21 Score=38.95 Aligned_cols=100 Identities=11% Similarity=0.162 Sum_probs=67.3
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC-------C-CC--------CcEEEEEccccccc
Q 014247 114 KVVVDVGCGTG--ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN-------N-LT--------DKVIVLHGRVEDVE 174 (428)
Q Consensus 114 ~~VLDiGcGtG--~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~l~ 174 (428)
++|--||+|+= .++..+|.+|. .|+.+|.+ +.++.+++.+... + +. .++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF- 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 47999999973 46667778888 89999999 8887776655321 1 10 123332 122222
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
...|+|+=. +......-.+++.++.++++|+.+|.-.+.++.
T Consensus 391 --~~aDlViEa----v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~ 432 (714)
T TIGR02437 391 --DNVDIVVEA----VVENPKVKAAVLAEVEQHVREDAILASNTSTIS 432 (714)
T ss_pred --cCCCEEEEc----CcccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 568998853 455556678899999999999998876655443
No 446
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=71.16 E-value=11 Score=36.78 Aligned_cols=95 Identities=23% Similarity=0.291 Sum_probs=51.6
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc----cccccCCCceeE
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR----VEDVEIDEEVDV 181 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~~~l~~~~~~Dl 181 (428)
...++.+||-.|+|. |..+..+|+. |..+|++++.+ .....+++ .+...-+.....+ +..+.....+|+
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCCCCE
Confidence 346778888877642 2333444554 64589999887 44444432 2332112221111 111222256999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+... . ....+..+.+.|+++|.++.
T Consensus 239 vld~~-----g----~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 239 VIEAV-----G----IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred EEECC-----C----CHHHHHHHHHhccCCcEEEE
Confidence 98632 1 12235666688999999874
No 447
>PRK09242 tropinone reductase; Provisional
Probab=71.08 E-value=23 Score=32.68 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..++++|-.|++.|. ++..+++.|+ +|+.++.+ +.++...+.+....-..++.++.+|+.+...
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 357899999997764 4555566677 79999988 6555544444333112358888888865321
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+++|+|+...
T Consensus 86 ~g~id~li~~a 96 (257)
T PRK09242 86 WDGLHILVNNA 96 (257)
T ss_pred cCCCCEEEECC
Confidence 15789888754
No 448
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=70.87 E-value=22 Score=33.91 Aligned_cols=91 Identities=20% Similarity=0.122 Sum_probs=51.0
Q ss_pred EEEEEcCCCc--HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC---CcEEEEEcccccccCCCceeEEEEecch
Q 014247 115 VVVDVGCGTG--ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT---DKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 115 ~VLDiGcGtG--~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~---~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
+|+=||+|.- .++..+++.|. +|+.++.+ +.++..+ .+++. ........-..+......+|+|+...
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~-- 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALN----ENGLRLEDGEITVPVLAADDPAELGPQDLVILAV-- 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHH----HcCCcccCCceeecccCCCChhHcCCCCEEEEec--
Confidence 5888999862 35566666676 89999986 5544332 22331 11110000011111116789998743
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.......++..+...+.++..++.
T Consensus 75 ----k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 75 ----KAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ----ccccHHHHHHHHhhhcCCCCEEEE
Confidence 123467788888888887766653
No 449
>PRK07677 short chain dehydrogenase; Provisional
Probab=70.82 E-value=22 Score=32.81 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------CC
Q 014247 113 GKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----------DE 177 (428)
Q Consensus 113 ~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----------~~ 177 (428)
++++|-.|++.|. ++..+++.|+ +|++++.+ ..+..+.+.+...+ .++.++.+|+.+... -+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4678988987764 4455566677 89999988 55555444444332 358888888765311 14
Q ss_pred ceeEEEEec
Q 014247 178 EVDVIISEW 186 (428)
Q Consensus 178 ~~DlVvs~~ 186 (428)
+.|+|+.+.
T Consensus 78 ~id~lI~~a 86 (252)
T PRK07677 78 RIDALINNA 86 (252)
T ss_pred CccEEEECC
Confidence 689988754
No 450
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.78 E-value=30 Score=33.30 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=53.5
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC-CC----------CCcEEEEEcccccccCCCce
Q 014247 114 KVVVDVGCGTG--ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN-NL----------TDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 114 ~~VLDiGcGtG--~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~-~~----------~~~v~~~~~d~~~l~~~~~~ 179 (428)
++|.=||+|.- .++..+++.|. +|+++|.+ +.++.+++.+... +. ..++.+. .|..+. -...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~--~~~a 80 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA--VSGA 80 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH--hccC
Confidence 46888999863 35566666676 89999998 7776665532111 10 0112221 222221 1467
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
|+|+... .........++.++..+++++.+++
T Consensus 81 DlVi~av----~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 81 DLVIEAV----PEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred CEEEEec----cCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 9988632 2222235667777777777766554
No 451
>PLN02256 arogenate dehydrogenase
Probab=70.57 E-value=26 Score=33.82 Aligned_cols=88 Identities=22% Similarity=0.141 Sum_probs=48.8
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 110 FIEGKVVVDVGCGT--GILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 110 ~~~~~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
.....+|.=||+|. |.++..+.+.|. +|+++|.+.....+ ...+. .. ..+..++. ....|+|+...
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~~~~a----~~~gv----~~-~~~~~e~~-~~~aDvVilav- 100 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDYSDIA----AELGV----SF-FRDPDDFC-EEHPDVVLLCT- 100 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccHHHHH----HHcCC----ee-eCCHHHHh-hCCCCEEEEec-
Confidence 34567899999874 335555555565 89999988422222 22332 22 22333321 13579888643
Q ss_pred hhhhcchhhHHHHHHHH-hcccccCeEE
Q 014247 188 GYMLLYESMLGSVITAR-DRWLKRGGLI 214 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~-~~~LkpgG~l 214 (428)
. ......++.++ ...++++..+
T Consensus 101 ----p-~~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 101 ----S-ILSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred ----C-HHHHHHHHHhhhhhccCCCCEE
Confidence 1 22356666666 4557777644
No 452
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.48 E-value=35 Score=33.19 Aligned_cols=75 Identities=23% Similarity=0.319 Sum_probs=56.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+.+++--|+-+|+ .+..+|.+|+ +|+-.--+ +..+.+.+.+.......++.+++.|+.++..
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 466788888988875 5667777886 88888777 7777777777775555679999999887531
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
..+.|+.|.+.
T Consensus 112 ~~~ldvLInNA 122 (314)
T KOG1208|consen 112 EGPLDVLINNA 122 (314)
T ss_pred CCCccEEEeCc
Confidence 26788888754
No 453
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=70.46 E-value=22 Score=34.99 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=49.2
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-CCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-IDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~DlVvs~~ 186 (428)
.++.+||-.|+|. |.++..+|+. |+ +|++++.+ +....+.+ ..|.. ..+...+...+. ....+|+|+-..
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~---~~Ga~--~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALE---HLGAD--DYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH---hcCCc--EEecCCChHHHHHhcCCCcEEEECC
Confidence 5788899887653 4555556665 66 68888777 44333322 23332 111111111110 113589888532
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ . ...+....+.|+++|+++..
T Consensus 253 -g----~----~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 -P----V----FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred -C----c----hHHHHHHHHHhccCCEEEEE
Confidence 1 1 12344556789999988753
No 454
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=70.16 E-value=32 Score=31.86 Aligned_cols=71 Identities=27% Similarity=0.334 Sum_probs=41.2
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh--HHH------------------HHHHHHHHHCCCCCcEEEEEccccc
Q 014247 115 VVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS--DIA------------------VQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 115 ~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s--~~~------------------~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
+||-+|||. | .++..++..|.++++.+|.+ +.. +.|.+.+.+.+..-+++....++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 478889883 3 35566677799999998865 211 2223333333333346666666522
Q ss_pred ---cc--CCCceeEEEEe
Q 014247 173 ---VE--IDEEVDVIISE 185 (428)
Q Consensus 173 ---l~--~~~~~DlVvs~ 185 (428)
.. +-..||+|++.
T Consensus 81 ~~~~~~~f~~~~DvVi~a 98 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNA 98 (234)
T ss_pred hhhchHHHHhCCCEEEEC
Confidence 11 12789999983
No 455
>PRK07411 hypothetical protein; Validated
Probab=69.60 E-value=23 Score=35.62 Aligned_cols=74 Identities=26% Similarity=0.298 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh--HH------------------HHHHHHHHHHCCCCCcEEEEEcc
Q 014247 112 EGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS--DI------------------AVQANEVVKANNLTDKVIVLHGR 169 (428)
Q Consensus 112 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 169 (428)
...+||-||||. | ..+..|+..|.++++.+|.+ +. ++.|.+.+++.+..-+|+.+...
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 457899999994 3 46778888899999988865 22 12233333333333345656554
Q ss_pred ccccc---CCCceeEEEEe
Q 014247 170 VEDVE---IDEEVDVIISE 185 (428)
Q Consensus 170 ~~~l~---~~~~~DlVvs~ 185 (428)
+.... +-..+|+|+..
T Consensus 117 ~~~~~~~~~~~~~D~Vvd~ 135 (390)
T PRK07411 117 LSSENALDILAPYDVVVDG 135 (390)
T ss_pred cCHHhHHHHHhCCCEEEEC
Confidence 44321 12679999984
No 456
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=69.52 E-value=22 Score=30.13 Aligned_cols=71 Identities=27% Similarity=0.307 Sum_probs=48.7
Q ss_pred CEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh---HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------C
Q 014247 114 KVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS---DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----------D 176 (428)
Q Consensus 114 ~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s---~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----------~ 176 (428)
++||=.|+++|. ++..+++.|..+|+.+..+ +......+.++..+ .++.+++.|+.+... .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 468888988764 5566666777788888876 44444444455444 569999999776421 2
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
+++|+++.+.
T Consensus 79 ~~ld~li~~a 88 (167)
T PF00106_consen 79 GPLDILINNA 88 (167)
T ss_dssp SSESEEEEEC
T ss_pred cccccccccc
Confidence 6899999864
No 457
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=69.45 E-value=3.2 Score=42.17 Aligned_cols=105 Identities=17% Similarity=0.086 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc----c----cCCCceeE
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED----V----EIDEEVDV 181 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----l----~~~~~~Dl 181 (428)
.+..+|-+|-|.|.+...+... +..+++++++. .++..|.+.+....- .+..+.-.|..+ . +....||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 4568899999999988877665 54599999999 999999886532110 011222222111 1 12368999
Q ss_pred EEEecchhhhcch------hhHHHHHHHHhcccccCeEEEcc
Q 014247 182 IISEWMGYMLLYE------SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~------~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+....=+.--+.. ---..+|..++..|.|.|.+++.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 9875311111111 12467788899999999999764
No 458
>PRK06128 oxidoreductase; Provisional
Probab=69.44 E-value=50 Score=31.43 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=44.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-H--HHHHHHHHHHHCCCCCcEEEEEcccccccC---------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-D--IAVQANEVVKANNLTDKVIVLHGRVEDVEI--------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~--~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ +|+.+..+ . ..+...+.+...+ .++.++.+|+.+...
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence 457899999976654 4455566677 67766554 2 2222333333332 357788889876321
Q ss_pred --CCceeEEEEec
Q 014247 176 --DEEVDVIISEW 186 (428)
Q Consensus 176 --~~~~DlVvs~~ 186 (428)
-++.|+||.+.
T Consensus 130 ~~~g~iD~lV~nA 142 (300)
T PRK06128 130 KELGGLDILVNIA 142 (300)
T ss_pred HHhCCCCEEEECC
Confidence 14689998764
No 459
>PRK10083 putative oxidoreductase; Provisional
Probab=69.35 E-value=22 Score=34.42 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=51.8
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-c-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-cc-CCCceeE
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQ-A-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VE-IDEEVDV 181 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~-~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~-~~~~~Dl 181 (428)
....++.+||-.|+|. |..+..+|+ . |+..+++++.+ +-.+.+++ .|...-+.....++.. +. ....+|+
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhcCCCCCCE
Confidence 3456788999999653 344455565 3 88779999988 55544433 2332111111111111 11 1123567
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+... + -...+....+.|+++|+++.
T Consensus 232 vid~~-g--------~~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 232 IIDAA-C--------HPSILEEAVTLASPAARIVL 257 (339)
T ss_pred EEECC-C--------CHHHHHHHHHHhhcCCEEEE
Confidence 77522 1 12235556678999998874
No 460
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=69.12 E-value=12 Score=36.31 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=51.7
Q ss_pred CCEEEEEcCCC--cHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCC-----CcEEEEEcccc-cccCCCceeEEEE
Q 014247 113 GKVVVDVGCGT--GILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLT-----DKVIVLHGRVE-DVEIDEEVDVIIS 184 (428)
Q Consensus 113 ~~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~-----~~v~~~~~d~~-~l~~~~~~DlVvs 184 (428)
..+|+-||+|. |.++..++++|. .|+.+..++. + .+..+++. ....+....+. ..+....+|+|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~-~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY-E----AVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH-H----HHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 36899999995 457777788776 7888877631 1 12333321 11111100010 1111257999886
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.. .......++..+..++++++.+++
T Consensus 79 av------K~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 79 GL------KTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred Ee------cCCChHhHHHHHhhhcCCCCEEEE
Confidence 42 112355677778888888887663
No 461
>PRK06172 short chain dehydrogenase; Provisional
Probab=69.12 E-value=27 Score=32.13 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=48.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
.++++||-.|++.|. ++..+++.|+ +|+.++.+ .-+..+.+.+... ..++.++.+|+.+...
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREA--GGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457899999987654 3445566677 79999988 5555544444433 2458889999875321
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+++|+|+.+.
T Consensus 82 ~g~id~li~~a 92 (253)
T PRK06172 82 YGRLDYAFNNA 92 (253)
T ss_pred hCCCCEEEECC
Confidence 14679998754
No 462
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=68.80 E-value=14 Score=35.83 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=56.3
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccc----ccc-----cCCCceeEE
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRV----EDV-----EIDEEVDVI 182 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l-----~~~~~~DlV 182 (428)
.+|+-+|+|. |.++..|+++| ..|+.+--++.++.. +.+|+ .+....- ... .....+|+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l----~~~GL----~i~~~~~~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEAL----KKKGL----RIEDEGGNFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHHH----HhCCe----EEecCCCccccccccccChhhcCCCCEE
Confidence 3688899995 57888899988 577777766444333 33343 2221111 000 112679999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+... ...+.++++..+...+++...+++
T Consensus 72 iv~v------Ka~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 72 IVTV------KAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred EEEe------ccccHHHHHHHhhhcCCCCcEEEE
Confidence 9633 344588899999999999986663
No 463
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=68.77 E-value=8.9 Score=37.28 Aligned_cols=94 Identities=23% Similarity=0.217 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc----cccccCCCceeEEE
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR----VEDVEIDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~~~l~~~~~~DlVv 183 (428)
.++.+||-.|+|. |..+..+|++ |+++|++++.+ ...+.+++ .|....+.....+ +..+.....+|+|+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhcCCCCCCEEE
Confidence 4678888887753 4455556664 77678888777 54444333 2321101111111 11122235689998
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
... .. ...+....+.|+++|.++..
T Consensus 238 d~~-----g~----~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 238 EMS-----GA----PSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred ECC-----CC----HHHHHHHHHHHhcCCEEEEE
Confidence 622 11 22345566788999988753
No 464
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=68.58 E-value=12 Score=31.90 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=29.5
Q ss_pred EEcCCCc--HHHHHHH--Hc-CCCeEEEEeCh-HHHHHHHHH--HHHCCCCCcEEEEEccc
Q 014247 118 DVGCGTG--ILSIFCA--QA-GAKRVYAVDAS-DIAVQANEV--VKANNLTDKVIVLHGRV 170 (428)
Q Consensus 118 DiGcGtG--~ls~~la--~~-g~~~V~giD~s-~~~~~a~~~--~~~~~~~~~v~~~~~d~ 170 (428)
|||++.| .....++ .. ...+|+++|++ ......+++ +..+.....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 4444443 23 24589999999 877777777 55554433355555443
No 465
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=68.25 E-value=62 Score=30.87 Aligned_cols=97 Identities=20% Similarity=0.317 Sum_probs=57.6
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHH-------HCCC-C--------CcEEEEEccccccc
Q 014247 114 KVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVK-------ANNL-T--------DKVIVLHGRVEDVE 174 (428)
Q Consensus 114 ~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~-------~~~~-~--------~~v~~~~~d~~~l~ 174 (428)
++|-=||+|. | .++..++..|. +|+++|.+ +.++.+++.+. +.+. . .++.+ ..+...+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEEL- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHHh-
Confidence 4688899985 2 45566667776 89999999 77766554332 1121 0 11222 2222222
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
...|+|+... .........++.++...++|+.+++-.+.
T Consensus 82 --~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~s~tS 120 (295)
T PLN02545 82 --RDADFIIEAI----VESEDLKKKLFSELDRICKPSAILASNTS 120 (295)
T ss_pred --CCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 5679998632 22334456677788888888887764433
No 466
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=68.19 E-value=36 Score=32.76 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCC-cHH-HHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEec
Q 014247 111 IEGKVVVDVGCGT-GIL-SIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~l-s~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~ 186 (428)
..+++|+-+|+|. |.. +..+...|+ +|+.+|.+ .....+ ...+. .++. ..++.. -..+|+|+...
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~----~~~G~----~~~~--~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARI----TEMGL----SPFH--LSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH----HHcCC----eeec--HHHHHHHhCCCCEEEECC
Confidence 4689999999985 222 233334477 99999999 543333 22332 2221 112111 15799999743
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.. ..+-+.+...++||+.++
T Consensus 219 p~---------~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 219 PA---------LVLTKEVLSKMPPEALII 238 (296)
T ss_pred Ch---------hhhhHHHHHcCCCCcEEE
Confidence 11 112234456688888776
No 467
>PRK07806 short chain dehydrogenase; Provisional
Probab=68.12 E-value=59 Score=29.66 Aligned_cols=103 Identities=19% Similarity=0.178 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-D-IAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
..++++|-.|+..|. ++..+++.|. +|+++..+ . ..+.....++.. ..++.++.+|+.+...
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 456789999975543 3344445576 78888765 2 333333333332 2347888888876421
Q ss_pred -CCceeEEEEecchhhh----------cchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 -DEEVDVIISEWMGYML----------LYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 -~~~~DlVvs~~~~~~l----------~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
-+.+|+|+.+.-.... .+..-...+++.+.+.++.+|.++.
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 0368988765311000 0011134556666666666665553
No 468
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=67.99 E-value=9 Score=37.25 Aligned_cols=93 Identities=27% Similarity=0.254 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCceeEEE
Q 014247 111 IEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~DlVv 183 (428)
.++.+||-.|+| .|..+..+|+. |.+.|++++.+ .-.+.+++ .+....+.....+. .++.....+|+|+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 567888887764 24445555554 66558888776 44433332 23311111111121 1122235699998
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
... .. ...+..+.+.|+++|+++.
T Consensus 236 d~~-----g~----~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 236 EMS-----GA----PKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred ECC-----CC----HHHHHHHHHhhcCCCEEEE
Confidence 632 11 2335566778899998874
No 469
>PRK08328 hypothetical protein; Provisional
Probab=67.95 E-value=38 Score=31.22 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 112 EGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 112 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
.+.+||-+|||. | ..+..+++.|.++++.+|.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 457899999994 4 46777888899999999843
No 470
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=67.47 E-value=48 Score=33.07 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=59.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcH----HHHHHHHc--CC--CeEEEEeC----h-HHHHHHHHHH----HHCCCCCcEE
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGI----LSIFCAQA--GA--KRVYAVDA----S-DIAVQANEVV----KANNLTDKVI 164 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~----ls~~la~~--g~--~~V~giD~----s-~~~~~a~~~~----~~~~~~~~v~ 164 (428)
++|.+.+...+.-+|+|+|.|.|. +-..++.+ |. -++|||+. + ..++.+.+++ +..|+. .+
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fe 177 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FE 177 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EE
Confidence 455555554566799999999995 44445554 21 18999999 6 5555544433 334553 34
Q ss_pred EEE---cccccccC---C-CceeEEEEecchhhhcchh--------hHHHHHHHHhcccccCeEEEcc
Q 014247 165 VLH---GRVEDVEI---D-EEVDVIISEWMGYMLLYES--------MLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 165 ~~~---~d~~~l~~---~-~~~DlVvs~~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|.. .+.+++.. . .+=.+++.+.+. .+++.. ....+|+.+ +.|+|.-.++..
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~-~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E 243 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMF-QLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVE 243 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeeh-hhhhhccccccccchHHHHHHHH-HhcCCCEEEEEe
Confidence 333 23333321 1 122333333321 222221 244567665 468999766644
No 471
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=67.37 E-value=30 Score=34.36 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HH-HHHHHHHHHHCCCCCcEEEEE-ccccccc-CCCceeEEEE
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DI-AVQANEVVKANNLTDKVIVLH-GRVEDVE-IDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~-~~~a~~~~~~~~~~~~v~~~~-~d~~~l~-~~~~~DlVvs 184 (428)
.++.+||-.|+|. |.++..+|++ |+ +|++++.+ +. .+.+ +..|.. .++. .+...+. ....+|+|+-
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a----~~lGa~---~~i~~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAI----DRLGAD---SFLVTTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHH----HhCCCc---EEEcCcCHHHHHHhhCCCcEEEE
Confidence 4788999998863 4555666665 77 69999877 43 2333 223332 1221 1111110 0135898885
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.. + -...+....+.|++||.++.
T Consensus 249 ~~-G--------~~~~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 249 TV-S--------AEHALLPLFSLLKVSGKLVA 271 (375)
T ss_pred CC-C--------cHHHHHHHHHhhcCCCEEEE
Confidence 32 1 12234555678999998874
No 472
>PRK07877 hypothetical protein; Provisional
Probab=67.31 E-value=19 Score=39.11 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCCcH-HHHHHHHcCC-CeEEEEeCh--HH-----------------HHHHHHHHHHCCCCCcEEEEEcc
Q 014247 111 IEGKVVVDVGCGTGI-LSIFCAQAGA-KRVYAVDAS--DI-----------------AVQANEVVKANNLTDKVIVLHGR 169 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~-ls~~la~~g~-~~V~giD~s--~~-----------------~~~a~~~~~~~~~~~~v~~~~~d 169 (428)
....+|+-+|||-|. .+..|++.|. ++++.+|.+ +. ++.|++++.+-+-.-+|+.+...
T Consensus 105 L~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 105 LGRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred HhcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 456899999999876 5677788884 888888754 21 22334444433333346666665
Q ss_pred cccccC---CCceeEEEEe
Q 014247 170 VEDVEI---DEEVDVIISE 185 (428)
Q Consensus 170 ~~~l~~---~~~~DlVvs~ 185 (428)
+..-.. -..+|+|+..
T Consensus 185 i~~~n~~~~l~~~DlVvD~ 203 (722)
T PRK07877 185 LTEDNVDAFLDGLDVVVEE 203 (722)
T ss_pred CCHHHHHHHhcCCCEEEEC
Confidence 543111 1579999984
No 473
>PRK06197 short chain dehydrogenase; Provisional
Probab=67.21 E-value=30 Score=33.03 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-.|+..|+ ++..+++.|+ +|+.+..+ +....+.+.+.......++.++.+|+.+...
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 567899988876553 3444555677 78888877 5554444444332112358888999876431
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+++|+||.+.
T Consensus 93 ~~~iD~li~nA 103 (306)
T PRK06197 93 YPRIDLLINNA 103 (306)
T ss_pred CCCCCEEEECC
Confidence 14689998764
No 474
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=67.16 E-value=7 Score=39.59 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=55.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH--cC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--ccCC--CceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQ--AG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--VEID--EEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~--~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--l~~~--~~~DlV 182 (428)
.....++|+|.|.|.-.-.+.. .+ ...++.||.+ .|........+...-.+.+.+...-+.+ ++.+ ..||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 4556788888886643322222 22 4578899999 9988877765541111111111101111 1222 569999
Q ss_pred EEecchhhhcchhhHHHHHH-HHhcccccCeEEEc
Q 014247 183 ISEWMGYMLLYESMLGSVIT-ARDRWLKRGGLILP 216 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~-~~~~~LkpgG~lv~ 216 (428)
++....+.+........+.+ -+.+..++|+.+++
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 99652222222222223333 33556788887764
No 475
>PRK09186 flagellin modification protein A; Provisional
Probab=67.01 E-value=31 Score=31.71 Aligned_cols=74 Identities=22% Similarity=0.204 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------C
Q 014247 112 EGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----------D 176 (428)
Q Consensus 112 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----------~ 176 (428)
++++||-.|++.|. ++..+++.|+ +|++++.+ +.++.+.+.+....-...+.++.+|+.+... -
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 56889999986653 3455556677 79999887 6555544444322112346777888876321 1
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
++.|+|+.+.
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 3489988754
No 476
>PRK08703 short chain dehydrogenase; Provisional
Probab=66.76 E-value=46 Score=30.25 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=35.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
.++++||-.||+.|. ++..+++.|+ +|++++.+ ...+...+.+...+- ..+.++..|+.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~ 66 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLM 66 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeec
Confidence 456899999976553 3444555677 79999988 554444444333221 12455666654
No 477
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=66.58 E-value=28 Score=36.80 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCcH--HHHHHHHcCCCeEEEEeCh
Q 014247 112 EGKVVVDVGCGTGI--LSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 112 ~~~~VLDiGcGtG~--ls~~la~~g~~~V~giD~s 144 (428)
+..+|+-+|.|... +...|+..|..++.++|.+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D 162 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTD 162 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEecc
Confidence 55789999999843 4455677799999999766
No 478
>PRK05876 short chain dehydrogenase; Provisional
Probab=66.44 E-value=31 Score=32.51 Aligned_cols=73 Identities=29% Similarity=0.206 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+ .++.++.+|+.+...
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457889999988764 4555666687 79999988 55554444444333 247888889876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 81 ~g~id~li~nA 91 (275)
T PRK05876 81 LGHVDVVFSNA 91 (275)
T ss_pred cCCCCEEEECC
Confidence 14689988754
No 479
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=66.32 E-value=37 Score=31.09 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=44.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc------------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE------------ 174 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~------------ 174 (428)
.++++||-.|+..|. ++..+++.|+ +|++++.+ .......+.+...+. .++.++..|+....
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHH
Confidence 578899999975543 3344455577 89999988 555444444444332 24667777764211
Q ss_pred -CCCceeEEEEec
Q 014247 175 -IDEEVDVIISEW 186 (428)
Q Consensus 175 -~~~~~DlVvs~~ 186 (428)
..++.|.|+.+.
T Consensus 88 ~~~~~id~vi~~A 100 (247)
T PRK08945 88 EQFGRLDGVLHNA 100 (247)
T ss_pred HHhCCCCEEEECC
Confidence 014678888743
No 480
>PRK12829 short chain dehydrogenase; Provisional
Probab=66.20 E-value=28 Score=32.13 Aligned_cols=73 Identities=26% Similarity=0.285 Sum_probs=45.5
Q ss_pred CCCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---------
Q 014247 109 SFIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------- 175 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------- 175 (428)
...+++++|-.|++.|. ++..+++.|+ +|++++.+ +......+.... . ++.++.+|+.+...
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~--~--~~~~~~~D~~~~~~~~~~~~~~~ 81 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPG--A--KVTATVADVADPAQVERVFDTAV 81 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc--C--ceEEEEccCCCHHHHHHHHHHHH
Confidence 34678899999987543 3334455577 79999988 544433322221 1 47888888775321
Q ss_pred --CCceeEEEEec
Q 014247 176 --DEEVDVIISEW 186 (428)
Q Consensus 176 --~~~~DlVvs~~ 186 (428)
-+++|.|+...
T Consensus 82 ~~~~~~d~vi~~a 94 (264)
T PRK12829 82 ERFGGLDVLVNNA 94 (264)
T ss_pred HHhCCCCEEEECC
Confidence 14689988743
No 481
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=66.05 E-value=50 Score=32.08 Aligned_cols=71 Identities=25% Similarity=0.353 Sum_probs=43.1
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh--HH------------------HHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 115 VVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS--DI------------------AVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 115 ~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
+||-+|||. | .++..++..|.++++.+|.+ +. ++.|.+.+++.+-.-+++....++.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 478899973 3 35566777799999999854 21 23334444443333346666666654
Q ss_pred cc----CCCceeEEEEe
Q 014247 173 VE----IDEEVDVIISE 185 (428)
Q Consensus 173 l~----~~~~~DlVvs~ 185 (428)
.. +-..||+|++.
T Consensus 81 ~~~~~~f~~~~DvVv~a 97 (312)
T cd01489 81 PDFNVEFFKQFDLVFNA 97 (312)
T ss_pred ccchHHHHhcCCEEEEC
Confidence 21 12689999984
No 482
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=81 Score=30.51 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh
Q 014247 96 RTETYRAAIMQNQSF-IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS 144 (428)
Q Consensus 96 r~~~~~~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s 144 (428)
|..+...++...+.. .....|+.+|||.-.+...+...+ ...+.-+|++
T Consensus 70 R~~aI~~~v~~Fl~~~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievD 120 (335)
T KOG2918|consen 70 RTMAIRHAVRAFLEQTDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVD 120 (335)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEcCCCccchhhhhhccCCCCcceEEEec
Confidence 334444444444432 445689999999988888887764 4455555555
No 483
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=65.99 E-value=29 Score=27.15 Aligned_cols=54 Identities=13% Similarity=0.240 Sum_probs=35.5
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~ 186 (428)
++|| +-||+|.-+-.+++. .++.++++|+. +++...++.++.. ...+|+|+..+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k----------------~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK----------------MNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHHHHHH----------------HHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEECc
Confidence 4566 669998776655543 24556667774 7778877766532 25689999754
No 484
>PRK07904 short chain dehydrogenase; Provisional
Probab=65.80 E-value=29 Score=32.21 Aligned_cols=74 Identities=20% Similarity=0.151 Sum_probs=46.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HH-HHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DI-AVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~-~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
..+++||-.|++.|. ++..+++.|..+|+.++.+ +- ++.+.+.+...+- .++.++.+|+.+...
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 456789999997764 3334445543389999887 43 5544444444332 258899999865321
Q ss_pred CCceeEEEEe
Q 014247 176 DEEVDVIISE 185 (428)
Q Consensus 176 ~~~~DlVvs~ 185 (428)
.+..|+++.+
T Consensus 85 ~g~id~li~~ 94 (253)
T PRK07904 85 GGDVDVAIVA 94 (253)
T ss_pred cCCCCEEEEe
Confidence 1478988864
No 485
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=65.63 E-value=10 Score=38.52 Aligned_cols=73 Identities=23% Similarity=0.380 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh--HH------------------HHHHHHHHHHCCCCCcEEEEEcc
Q 014247 112 EGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS--DI------------------AVQANEVVKANNLTDKVIVLHGR 169 (428)
Q Consensus 112 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 169 (428)
.+.+||-||||- | -|...+|..|+.+|+.||++ .+ +..|.+.+..-.-.-++...+++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 568999999984 3 24555666689999888764 22 22333334433333457888888
Q ss_pred cccccCC----CceeEEEE
Q 014247 170 VEDVEID----EEVDVIIS 184 (428)
Q Consensus 170 ~~~l~~~----~~~DlVvs 184 (428)
+.+..+. ++||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 8876543 67898886
No 486
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=65.57 E-value=41 Score=32.15 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=50.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
....++.+||-.|+|. |..+..+++. |+ +|++++.+ +..+.+++ .+... +. +..+......+|+|+.
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~-~~----~~~~~~~~~~~d~vid 220 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVET-VL----PDEAESEGGGFDVVVE 220 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcE-Ee----CccccccCCCCCEEEE
Confidence 3456788999997642 2333334444 77 59999888 66665554 33321 11 1111122256999986
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.. .. ...+....+.|+++|.++.
T Consensus 221 ~~-----g~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 221 AT-----GS----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CC-----CC----hHHHHHHHHHhhcCCEEEE
Confidence 31 11 1234455667899998874
No 487
>PRK07831 short chain dehydrogenase; Provisional
Probab=65.48 E-value=37 Score=31.44 Aligned_cols=75 Identities=24% Similarity=0.244 Sum_probs=47.5
Q ss_pred CCCCEEEEEcC-CCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGC-GTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGc-GtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
..++++|-.|+ |.|. ++..+++.|+ +|+.+|.+ ..++.+.+.++...-..++.++.+|+.+...
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 45688999986 3443 4555666687 69999988 6555555544432111357888888865321
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|+++.+.
T Consensus 94 ~~g~id~li~~a 105 (262)
T PRK07831 94 RLGRLDVLVNNA 105 (262)
T ss_pred HcCCCCEEEECC
Confidence 14689888754
No 488
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=65.16 E-value=24 Score=33.98 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=42.1
Q ss_pred CCCEEEEEcCCCcHHHHHHH----HcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----CCceeEE
Q 014247 112 EGKVVVDVGCGTGILSIFCA----QAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----DEEVDVI 182 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la----~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----~~~~DlV 182 (428)
.+++||-.|+ +|.++..++ +.|. +|+++..+ .............+...+++++.+|+.+... -..+|+|
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 4678998884 555555444 4466 78777655 3222222222222223468899999877532 1457988
Q ss_pred EEec
Q 014247 183 ISEW 186 (428)
Q Consensus 183 vs~~ 186 (428)
+...
T Consensus 82 ih~A 85 (325)
T PLN02989 82 FHTA 85 (325)
T ss_pred EEeC
Confidence 8753
No 489
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=64.95 E-value=27 Score=33.17 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN 157 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~ 157 (428)
.....+... ...++..|||.=+|+|..+..+.+.|- +.+|+|++ ..++.+.+++...
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 333334444 457899999999999999988888755 89999999 9999988887654
No 490
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.84 E-value=13 Score=36.02 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=52.0
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-------cccccCCCc
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-------VEDVEIDEE 178 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~l~~~~~ 178 (428)
...++..||-.|||. |..+..+|++ |++.+++++.+ .-.+.++ ..+.. .++... +..+.....
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~ga~---~v~~~~~~~~~~~i~~~~~~~~ 237 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAR----EFGAT---DIVAERGEEAVARVRELTGGVG 237 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HcCCc---eEecCCcccHHHHHHHhcCCCC
Confidence 445677888788753 4445555665 77679999887 3333333 23331 222111 111222246
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+++... + -...+....+.|+++|.++..
T Consensus 238 ~d~il~~~-g--------~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 238 ADAVLECV-G--------TQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CCEEEECC-C--------CHHHHHHHHHhhccCCEEEEe
Confidence 89998632 1 123456667788999988753
No 491
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=64.63 E-value=25 Score=32.98 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=44.7
Q ss_pred HHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHH
Q 014247 126 LSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITA 203 (428)
Q Consensus 126 ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~ 203 (428)
++..+.+.| ..+|+|+|.+ ..+..|++ .|..+. ...+...+ ..+|+|+... .......++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~~~~~---~~~Dlvvlav------P~~~~~~~l~~ 64 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE----LGIIDE---ASTDIEAV---EDADLVVLAV------PVSAIEDVLEE 64 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSE---EESHHHHG---GCCSEEEE-S-------HHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCeee---ccCCHhHh---cCCCEEEEcC------CHHHHHHHHHH
Confidence 356677776 3599999999 66655543 344331 22222222 4679998643 23447788899
Q ss_pred HhcccccCeEEE
Q 014247 204 RDRWLKRGGLIL 215 (428)
Q Consensus 204 ~~~~LkpgG~lv 215 (428)
+...+++|+.++
T Consensus 65 ~~~~~~~~~iv~ 76 (258)
T PF02153_consen 65 IAPYLKPGAIVT 76 (258)
T ss_dssp HHCGS-TTSEEE
T ss_pred hhhhcCCCcEEE
Confidence 999899887765
No 492
>PRK06153 hypothetical protein; Provisional
Probab=64.60 E-value=41 Score=33.60 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=27.6
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
..+.+|+-||||- | ..+..||+.|.++++.+|.+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 3567999999984 5 46788889999999999865
No 493
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=64.53 E-value=21 Score=34.53 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc------cccccCCCcee
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR------VEDVEIDEEVD 180 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~l~~~~~~D 180 (428)
..++.+||-.|+|. |.++..+|+. |..+|++++.+ ...+.++ ..+.. .++..+ +..+.....+|
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~~~~~~~~~~~~i~~~~~~~~~d 237 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE----RLGAD---HVLNASDDVVEEVRELTGGRGAD 237 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH----HhCCc---EEEcCCccHHHHHHHHhCCCCCC
Confidence 45688999998653 3334444554 63488988887 5544432 23331 122111 11222224699
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+... + . ...+....+.|+++|+++.
T Consensus 238 vvld~~-g----~----~~~~~~~~~~l~~~g~~i~ 264 (340)
T cd05284 238 AVIDFV-G----S----DETLALAAKLLAKGGRYVI 264 (340)
T ss_pred EEEEcC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 998632 1 1 2335556677899998874
No 494
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=64.20 E-value=39 Score=35.24 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=61.7
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH-------CCC---------CCcEEEEEccccccc
Q 014247 114 KVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA-------NNL---------TDKVIVLHGRVEDVE 174 (428)
Q Consensus 114 ~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~-------~~~---------~~~v~~~~~d~~~l~ 174 (428)
++|--||+|+ | .++..++++|. .|+..|.+ +.++.+.+.+.. .|. -.+++.. .+..++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~~- 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALADL- 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh-
Confidence 5788899995 3 46677788888 89999999 887776554432 221 0124433 233332
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
...|+|+.. +......-..++.++...++|+.++...+.+
T Consensus 85 --~~aDlViEa----v~E~~~vK~~vf~~l~~~~~~~ailasntSt 124 (507)
T PRK08268 85 --ADCDLVVEA----IVERLDVKQALFAQLEAIVSPDCILATNTSS 124 (507)
T ss_pred --CCCCEEEEc----CcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 368999874 2333444556677788888888777644443
No 495
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=64.14 E-value=39 Score=31.09 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-.|++.|. ++..+++.|+ +|+.++.+ +.+....+.++..+ .++.++.+|+.+...
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 568899999976653 3444555677 89999988 65555444444433 347888888765321
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+++|.|+.+.
T Consensus 86 ~~~id~vi~~a 96 (256)
T PRK06124 86 HGRLDILVNNV 96 (256)
T ss_pred cCCCCEEEECC
Confidence 14678888753
No 496
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=64.07 E-value=34 Score=33.07 Aligned_cols=94 Identities=21% Similarity=0.169 Sum_probs=51.5
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCCceeEEEE
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDEEVDVIIS 184 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~~~DlVvs 184 (428)
...++.+||-.|+|. |..+..+|++ |+ +|++++.+ +-.+.+++ .+...-+.....+..+ +.....+|+++.
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~d~vi~ 234 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQELGGAKLILA 234 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhcCCCCEEEE
Confidence 556788999999643 4444555555 66 79999888 65555533 2321111111111111 110135898885
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.. + ....+....+.|+++|.++.
T Consensus 235 ~~-g--------~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 235 TA-P--------NAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred CC-C--------chHHHHHHHHHcccCCEEEE
Confidence 21 1 12345556678899998874
No 497
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=63.94 E-value=18 Score=34.22 Aligned_cols=94 Identities=26% Similarity=0.289 Sum_probs=51.2
Q ss_pred cCCCCCCEEEEEcCC--CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCce
Q 014247 108 QSFIEGKVVVDVGCG--TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEV 179 (428)
Q Consensus 108 ~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~ 179 (428)
....++..||-.||. .|.....+++. |+ +|++++.+ ...+.+++ .+...-+.....+. ........+
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~~~~~ 209 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALTGGRGV 209 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHcCCCCc
Confidence 345678899999983 44455555555 66 68998888 65555432 23211111111111 111122468
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+++... + . ..+..+.+.++++|.++.
T Consensus 210 d~v~~~~-g----~-----~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 210 DVVYDPV-G----G-----DVFEASLRSLAWGGRLLV 236 (323)
T ss_pred EEEEECc-c----H-----HHHHHHHHhhccCCEEEE
Confidence 9988632 1 1 123445567888998764
No 498
>PLN02780 ketoreductase/ oxidoreductase
Probab=63.86 E-value=30 Score=33.61 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 112 EGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 112 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
.|+.+|-.|++.|. ++..+++.|+ +|+.++.+ +-++...+.+....-..++..+..|+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 47899999988774 5666777788 79999998 665555444443221224667777765
No 499
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=63.78 E-value=32 Score=31.72 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..|+.+|-+|.-.|. ++..|+++|. ++.++|-+ +..+. ...++.-.-...+.|++.|+.+-..
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi-k~~~i~~~~En~~a-~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~ 80 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI-KVLVIDDSEENPEA-IAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT 80 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc-hheeehhhhhCHHH-HHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHH
Confidence 357888888876664 5666777788 67888877 66443 3333444445569999999876311
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+..|+++-..
T Consensus 81 fg~iDIlINgA 91 (261)
T KOG4169|consen 81 FGTIDILINGA 91 (261)
T ss_pred hCceEEEEccc
Confidence 16788888643
No 500
>PRK14852 hypothetical protein; Provisional
Probab=63.69 E-value=40 Score=37.84 Aligned_cols=75 Identities=16% Similarity=0.083 Sum_probs=46.4
Q ss_pred CCCCEEEEEcCC-CcH-HHHHHHHcCCCeEEEEeCh--HH------------------HHHHHHHHHHCCCCCcEEEEEc
Q 014247 111 IEGKVVVDVGCG-TGI-LSIFCAQAGAKRVYAVDAS--DI------------------AVQANEVVKANNLTDKVIVLHG 168 (428)
Q Consensus 111 ~~~~~VLDiGcG-tG~-ls~~la~~g~~~V~giD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~ 168 (428)
....+|+-+||| .|. .+..+++.|.++++.+|.+ +. ++.+++.+.+-+-.-+|+.+..
T Consensus 330 L~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred HhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 356899999999 554 6788889999888888764 22 2223333333333334666654
Q ss_pred cccccc---CCCceeEEEEe
Q 014247 169 RVEDVE---IDEEVDVIISE 185 (428)
Q Consensus 169 d~~~l~---~~~~~DlVvs~ 185 (428)
.+..-. +-..+|+|+..
T Consensus 410 ~I~~en~~~fl~~~DiVVDa 429 (989)
T PRK14852 410 GVAAETIDAFLKDVDLLVDG 429 (989)
T ss_pred CCCHHHHHHHhhCCCEEEEC
Confidence 442211 12679999974
Done!