BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014248
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|B Chain B, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|C Chain C, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|D Chain D, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
Length = 391
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 24/235 (10%)
Query: 82 RLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVS 141
RLL+AIY P+N Y + +D A ES A + + + F NV V ++ +
Sbjct: 101 RLLRAIYMPQNFYCIHVDRKAEESFLAAV------QGIASCFDNVFVASQLESVVYASWT 154
Query: 142 XXXXXXXXXXXXXKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGW 201
+++ NW + I LS +D+P+ + +++ + N
Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214
Query: 202 KERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWD 261
+ER V+D L T I+ A P +F GS + +++R ++ Y ++ +
Sbjct: 215 EERWKKRYAVVDGKL---TNTGIVKAPPPLKTP----LFSGSAYFVVTREYVGYVLEN-E 266
Query: 262 NFPRKLLMYLTNVPYPLESYFHTI---------ICNSPQFQNSTINTDLSFMKWE 307
N +KL+ + + P E + TI +S ++ S +N F+KW+
Sbjct: 267 NI-QKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQ 320
>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAK|B Chain B, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAM|A Chain A, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|B Chain B, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|C Chain C, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|D Chain D, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
Length = 391
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 24/235 (10%)
Query: 82 RLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVS 141
RLL+AIY P+N Y + +D A ES A + + + F NV V ++ +
Sbjct: 101 RLLRAIYMPQNFYCIHVDRKAEESFLAAV------QGIASCFDNVFVASQLESVVYASWT 154
Query: 142 XXXXXXXXXXXXXKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGW 201
+++ NW + I L +D+P+ + +++ + N
Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214
Query: 202 KERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWD 261
+ER V+D L T I+ A P +F GS + +++R ++ Y ++ +
Sbjct: 215 EERWKKRYAVVDGKL---TNTGIVKAPPPLKTP----LFSGSAYFVVTREYVGYVLEN-E 266
Query: 262 NFPRKLLMYLTNVPYPLESYFHTI---------ICNSPQFQNSTINTDLSFMKWE 307
N +KL+ + + P E + TI +S ++ S +N F+KW+
Sbjct: 267 NI-QKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQ 320
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 376 ESLKNGEEL----CSASG-NNID---AVKPGVYGMKLRALLSELVSD 414
E L+N E L C ++G +NID A K G+Y K+ LLSE V++
Sbjct: 57 EVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAE 103
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 305 KWESPAHVGPRTLTL 319
KW SPAH GP LTL
Sbjct: 630 KWSSPAHEGPHHLTL 644
>pdb|2J7M|A Chain A, Characterization Of A Family 32 Cbm
Length = 149
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 305 KWESPAHVGPRTLTL 319
KW SPAH GP LTL
Sbjct: 42 KWSSPAHEGPHHLTL 56
>pdb|2J1A|A Chain A, Structure Of Cbm32 From Clostridium Perfringens Beta-N-
Acetylhexosaminidase Gh84c In Complex With Galactose
pdb|2J1E|A Chain A, High Resolution Crystal Structure Of Cbm32 From A
N-Acetyl- Beta-Hexosaminidase In Complex With Lacnac
Length = 150
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 305 KWESPAHVGPRTLTL 319
KW SPAH GP LTL
Sbjct: 43 KWSSPAHEGPHHLTL 57
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 345 LEKIDDRVLNRSGNGV----------VPGNWCSIRGKKKNVESLKNGEELCSASGNNIDA 394
+E ID++++ NG +PG+ C+ + K + +KN EL GN +DA
Sbjct: 262 IEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELV-VDGNQVDA 320
Query: 395 VKP 397
P
Sbjct: 321 QSP 323
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 345 LEKIDDRVLNRSGNGV----------VPGNWCSIRGKKKNVESLKNGEELCSASGNNIDA 394
+E ID++++ NG +PG+ C+ + K + +KN EL GN +DA
Sbjct: 262 IEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELV-VDGNQVDA 320
Query: 395 VKP 397
P
Sbjct: 321 QSP 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,435,276
Number of Sequences: 62578
Number of extensions: 511831
Number of successful extensions: 926
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 13
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)