Query 014248
Match_columns 428
No_of_seqs 228 out of 846
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 2E-111 5E-116 864.9 37.1 349 59-423 73-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 1.1E-65 2.4E-70 533.2 20.1 333 60-421 98-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 2.1E-53 4.6E-58 409.0 18.4 238 66-326 1-244 (244)
4 TIGR03469 HonB hopene-associat 93.3 4.2 9.2E-05 41.9 16.7 107 61-173 37-147 (384)
5 TIGR03472 HpnI hopanoid biosyn 89.0 8.5 0.00018 39.5 13.6 104 63-183 40-148 (373)
6 cd02525 Succinoglycan_BP_ExoA 88.9 7.1 0.00015 36.2 12.0 99 65-183 1-103 (249)
7 cd06439 CESA_like_1 CESA_like_ 85.8 13 0.00027 35.0 11.8 103 59-183 24-131 (251)
8 PRK14716 bacteriophage N4 adso 84.5 13 0.00027 40.4 12.4 103 62-175 64-174 (504)
9 PRK11204 N-glycosyltransferase 84.0 25 0.00055 36.3 14.1 94 62-173 52-148 (420)
10 PF08660 Alg14: Oligosaccharid 82.6 11 0.00024 34.8 9.6 125 69-197 3-131 (170)
11 PRK10063 putative glycosyl tra 80.6 42 0.00091 32.4 13.4 101 64-183 1-106 (248)
12 cd06437 CESA_CaSu_A2 Cellulose 80.6 19 0.00041 33.5 10.7 103 64-181 1-107 (232)
13 PF13641 Glyco_tranf_2_3: Glyc 79.4 5 0.00011 37.1 6.3 113 64-194 1-120 (228)
14 TIGR03111 glyc2_xrt_Gpos1 puta 78.6 42 0.00091 35.3 13.6 96 61-173 46-145 (439)
15 PRK14583 hmsR N-glycosyltransf 77.7 35 0.00076 35.9 12.7 94 62-173 73-169 (444)
16 cd02520 Glucosylceramide_synth 76.5 36 0.00078 30.9 11.0 103 64-183 1-108 (196)
17 cd04184 GT2_RfbC_Mx_like Myxoc 76.2 48 0.001 29.7 11.7 104 64-183 1-108 (202)
18 PF00535 Glycos_transf_2: Glyc 75.9 14 0.00029 31.4 7.6 100 69-186 3-106 (169)
19 COG1216 Predicted glycosyltran 75.5 19 0.0004 35.8 9.4 90 64-170 3-94 (305)
20 cd04187 DPM1_like_bac Bacteria 75.0 30 0.00064 30.7 9.9 94 72-183 4-102 (181)
21 cd06421 CESA_CelA_like CESA_Ce 73.0 32 0.0007 31.5 9.9 101 64-183 1-106 (234)
22 PTZ00260 dolichyl-phosphate be 72.8 76 0.0017 32.2 13.2 112 60-184 66-188 (333)
23 TIGR01556 rhamnosyltran L-rham 72.2 25 0.00055 34.0 9.3 83 75-173 5-87 (281)
24 cd06434 GT2_HAS Hyaluronan syn 72.1 42 0.0009 31.0 10.4 91 66-175 2-93 (235)
25 PLN02726 dolichyl-phosphate be 71.0 94 0.002 29.3 13.2 104 61-183 6-115 (243)
26 cd04179 DPM_DPG-synthase_like 70.0 36 0.00078 30.0 9.1 105 70-193 3-112 (185)
27 cd02511 Beta4Glucosyltransfera 69.9 55 0.0012 30.7 10.8 95 66-184 2-97 (229)
28 PF07521 RMMBL: RNA-metabolisi 69.3 3 6.4E-05 29.6 1.5 27 73-100 16-42 (43)
29 PRK10073 putative glycosyl tra 67.6 66 0.0014 32.5 11.5 93 63-173 5-99 (328)
30 cd04196 GT_2_like_d Subfamily 65.8 94 0.002 27.8 11.2 89 69-174 3-94 (214)
31 cd06913 beta3GnTL1_like Beta 1 64.4 67 0.0015 29.5 10.1 105 69-184 2-110 (219)
32 cd04192 GT_2_like_e Subfamily 64.1 56 0.0012 29.7 9.4 98 69-183 2-104 (229)
33 PRK07132 DNA polymerase III su 63.4 44 0.00095 33.7 9.1 94 63-168 16-128 (299)
34 cd02510 pp-GalNAc-T pp-GalNAc- 62.7 77 0.0017 31.0 10.6 96 69-181 3-103 (299)
35 cd04186 GT_2_like_c Subfamily 62.0 98 0.0021 26.2 11.2 84 69-173 2-88 (166)
36 cd06427 CESA_like_2 CESA_like_ 60.1 98 0.0021 29.0 10.5 94 64-173 1-98 (241)
37 PRK11234 nfrB bacteriophage N4 59.7 66 0.0014 36.6 10.5 104 61-175 60-171 (727)
38 cd04185 GT_2_like_b Subfamily 58.4 1.2E+02 0.0025 27.3 10.4 90 69-173 2-93 (202)
39 cd02526 GT2_RfbF_like RfbF is 57.8 73 0.0016 29.3 9.1 94 69-182 2-96 (237)
40 cd06423 CESA_like CESA_like is 56.4 92 0.002 26.0 8.9 94 70-181 3-98 (180)
41 cd00761 Glyco_tranf_GTA_type G 51.0 1.3E+02 0.0029 24.3 10.2 90 69-175 2-93 (156)
42 PRK06581 DNA polymerase III su 50.7 1.4E+02 0.003 29.7 9.8 98 63-169 13-128 (263)
43 PRK07276 DNA polymerase III su 46.9 1E+02 0.0022 31.1 8.5 24 64-87 23-46 (290)
44 cd06442 DPM1_like DPM1_like re 46.1 1.2E+02 0.0025 27.6 8.4 94 69-181 2-98 (224)
45 TIGR03030 CelA cellulose synth 44.8 5.1E+02 0.011 29.3 14.9 115 61-193 128-262 (713)
46 PRK05454 glucosyltransferase M 44.3 5.2E+02 0.011 29.3 15.1 125 59-194 119-255 (691)
47 PF07747 MTH865: MTH865-like f 43.8 12 0.00026 30.1 1.1 18 166-183 11-28 (75)
48 cd02522 GT_2_like_a GT_2_like_ 43.5 1.8E+02 0.004 26.2 9.2 89 67-181 2-92 (221)
49 PRK05917 DNA polymerase III su 43.4 1.4E+02 0.003 30.2 8.8 79 82-169 53-134 (290)
50 cd06420 GT2_Chondriotin_Pol_N 43.1 2.2E+02 0.0049 24.7 11.8 98 69-183 2-101 (182)
51 PRK10714 undecaprenyl phosphat 41.7 3.8E+02 0.0082 27.0 12.7 106 62-185 4-114 (325)
52 cd02537 GT8_Glycogenin Glycoge 40.8 2.1E+02 0.0046 27.4 9.5 107 66-181 1-111 (240)
53 cd06438 EpsO_like EpsO protein 40.8 2.6E+02 0.0056 24.8 11.0 95 69-180 2-100 (183)
54 PRK15489 nfrB bacteriophage N4 39.7 2.5E+02 0.0053 32.0 10.9 115 63-194 70-195 (703)
55 cd04188 DPG_synthase DPG_synth 38.7 1.6E+02 0.0036 26.7 8.1 93 70-181 3-102 (211)
56 cd06433 GT_2_WfgS_like WfgS an 37.0 2.8E+02 0.0061 24.1 10.7 87 69-175 3-91 (202)
57 COG4746 Uncharacterized protei 35.3 22 0.00047 28.7 1.3 17 167-183 17-33 (80)
58 PRK06871 DNA polymerase III su 34.3 1.1E+02 0.0024 31.3 6.6 82 80-169 64-146 (325)
59 PRK05986 cob(I)alamin adenolsy 31.1 3.7E+02 0.0081 25.4 9.1 106 77-193 37-152 (191)
60 PF11051 Mannosyl_trans3: Mann 27.9 2.6E+02 0.0056 27.5 7.9 95 68-180 4-111 (271)
61 PRK05818 DNA polymerase III su 27.6 1.7E+02 0.0036 29.1 6.4 82 81-169 46-127 (261)
62 PRK13915 putative glucosyl-3-p 27.4 4.7E+02 0.01 26.1 9.8 108 62-184 29-142 (306)
63 PRK08058 DNA polymerase III su 27.2 3.4E+02 0.0075 27.4 8.9 38 124-168 111-148 (329)
64 cd06436 GlcNAc-1-P_transferase 26.9 4.7E+02 0.01 23.5 10.2 96 69-174 2-104 (191)
65 cd02514 GT13_GLCNAC-TI GT13_GL 26.5 5.5E+02 0.012 26.4 10.1 97 67-175 3-113 (334)
66 PF09363 XFP_C: XFP C-terminal 26.4 57 0.0012 31.2 2.8 84 275-364 41-131 (203)
67 KOG1752 Glutaredoxin and relat 25.9 2.3E+02 0.0049 24.1 6.1 61 77-146 27-87 (104)
68 PRK08309 short chain dehydroge 25.1 5.4E+02 0.012 23.6 9.6 84 75-169 31-114 (177)
69 PRK05564 DNA polymerase III su 24.8 4.1E+02 0.0089 26.4 8.8 97 64-168 25-131 (313)
70 cd06435 CESA_NdvC_like NdvC_li 24.6 5.4E+02 0.012 23.5 10.0 101 69-184 3-107 (236)
71 PF02572 CobA_CobO_BtuR: ATP:c 23.6 4.7E+02 0.01 24.2 8.3 107 77-193 18-133 (172)
72 COG4746 Uncharacterized protei 21.5 57 0.0012 26.4 1.5 36 134-184 40-75 (80)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=2.2e-111 Score=864.92 Aligned_cols=349 Identities=46% Similarity=0.867 Sum_probs=337.2
Q ss_pred CCCCCCeEEEEEEeeCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeec
Q 014248 59 GVDYPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKM 138 (428)
Q Consensus 59 ~~~~p~kiAYLIl~~h~d~~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wg 138 (428)
..+.|||+||||+|||+|.+|++|||++||||+|+||||||+||+..++.+++..++..|++.+++||+|+++++.|+||
T Consensus 73 ~~~~~~r~AYLI~~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WG 152 (421)
T PLN03183 73 VQDKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYR 152 (421)
T ss_pred CCCCCCeEEEEEEecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccC
Confidence 34569999999999779999999999999999999999999999999999999999888999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHccCCCCcceEeeecCCCcceeeeeeeEeeCCcccc
Q 014248 139 GVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYY 218 (428)
Q Consensus 139 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~~~~~~nFI~~~~~~~wk~~~R~~~~~~dp~ly~ 218 (428)
|+|||+|||+||+.||+.+.+|||||||||+||||+||+||+|.|+++|+|+|||+++++.+|++.+|++++++||++|.
T Consensus 153 G~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~ 232 (421)
T PLN03183 153 GPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYS 232 (421)
T ss_pred ChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceee
Confidence 99999999999999999989999999999999999999998899999999999999998899999999999999999998
Q ss_pred ccCccceeecccCCCCCCceeeecceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCchhhhHHhhcCCCCCCcccc
Q 014248 219 KKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTIN 298 (428)
Q Consensus 219 ~~k~~i~~~~~kR~~P~~~~l~~GS~W~~LsR~fveyii~~~d~lpr~ll~yf~~t~~pdE~yFqTvl~Ns~~f~~t~vn 298 (428)
.+++.++|.+++|.+|+++++|+||+|++|||+|||||+++|||+|++++|||+++++|||+|||||+||+++|+++++|
T Consensus 233 ~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn 312 (421)
T PLN03183 233 TNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVN 312 (421)
T ss_pred cccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccC
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CceeEEecCCCCCCCCcccChhhHHHHHhCCCcceEEeccCCCHHHHHHHHHHHhccCCCCCCCCeeeeccCcccccccc
Q 014248 299 TDLSFMKWESPAHVGPRTLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKIDDRVLNRSGNGVVPGNWCSIRGKKKNVESL 378 (428)
Q Consensus 299 ~nLRyi~W~~~~~~~P~~l~~~D~~~l~~S~~~alFARKF~~d~~vLd~Id~~ll~r~~~~~~~g~W~~~~~~~~~~~~~ 378 (428)
+|||||+|++++++||++|+++|+++|++|+ ++|||||+.|++|||+||++|++|.+++++|||||.|+
T Consensus 313 ~nLRyI~W~~~~~~~P~~l~~~D~~~l~~S~--~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~~--------- 381 (421)
T PLN03183 313 HDLHYISWDNPPKQHPHTLSLNDTEKMIASG--AAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSGK--------- 381 (421)
T ss_pred CceeEEecCCCCCCCCcccCHHHHHHHHhCC--CccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCCC---------
Confidence 9999999999988999999999999999999 99999999999999999999999999999999999764
Q ss_pred cCCCCcccccCCCCCccCCCchHHHHHHHHHHhhcCCCCCccccc
Q 014248 379 KNGEELCSASGNNIDAVKPGVYGMKLRALLSELVSDGRGKINQCQ 423 (428)
Q Consensus 379 ~~~~~~c~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~c~ 423 (428)
||||+|| |+++|||||||+||++||++||++++||++||+
T Consensus 382 ----~~c~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 382 ----PKCSRVG-DPAKIKPGPGAQRLKGLVSRLVLEAKLGQNQCK 421 (421)
T ss_pred ----CcccccC-CcCccCCCcHHHHHHHHHHHHhchhccccccCC
Confidence 7999999 999999999999999999999999999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-65 Score=533.22 Aligned_cols=333 Identities=34% Similarity=0.606 Sum_probs=307.5
Q ss_pred CCCCCeEEEEEEeeCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecC
Q 014248 60 VDYPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMG 139 (428)
Q Consensus 60 ~~~p~kiAYLIl~~h~d~~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg 139 (428)
.+.+++.||++++.|+|.++++|+|+|+|||+|.||||||++|+++++..+++ ++.|++||+|+++++.|+|||
T Consensus 98 ~~~~~~~~a~~~~v~kd~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~------L~~cf~NV~v~~k~~~v~~~G 171 (439)
T KOG0799|consen 98 KELKPFPAAFLRVVYKDYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQ------LASCFPNVIVLPKRESVTYGG 171 (439)
T ss_pred ccccccceEEEEeecccHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHH------HHhcCCceEEeccccceecCC
Confidence 34555567777777999999999999999999999999999999999876654 789999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHccCCCCcceEeeecCCCcceeeeeeeEeeCCccccc
Q 014248 140 VSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYYK 219 (428)
Q Consensus 140 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~~~~~~nFI~~~~~~~wk~~~R~~~~~~dp~ly~~ 219 (428)
+|+++|+|+||+.|++...+|||||||||+||||||++||+++|+.+ +|.|||+++...+|+..++.++...|++ |+.
T Consensus 172 ~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~~~~~~k~~~~~~~-~~~ 249 (439)
T KOG0799|consen 172 HSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWKLNRKAKWDIIDLK-YFR 249 (439)
T ss_pred chhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHHHhcccCCcccccc-hhe
Confidence 99999999999999999889999999999999999999999999887 8899999999999999999998989988 666
Q ss_pred cCccceeecccCCCCCCceeeecceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCchhhhHHhhcCCCCCCccccC
Q 014248 220 KATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTINT 299 (428)
Q Consensus 220 ~k~~i~~~~~kR~~P~~~~l~~GS~W~~LsR~fveyii~~~d~lpr~ll~yf~~t~~pdE~yFqTvl~Ns~~f~~t~vn~ 299 (428)
+++.+++.+ +|++|++|+||.|++|||+||+||++ +++|+++++||+++++|||+||||++||+ |..+.+++
T Consensus 250 ~~s~~~~~~----lp~~~ki~~Gs~~~~LsR~fv~y~i~--~~~~~~ll~~~~~t~~~dE~f~~Tl~~n~--~~~~g~~~ 321 (439)
T KOG0799|consen 250 NKSPLPWVI----LPTALKLFKGSAWVSLSRAFVEYLIS--GNLPRTLLMYYNNTYSPDEGFFHTLQCNP--FGMPGVFN 321 (439)
T ss_pred ecCCCcccc----CCCceEEEecceeEEEeHHHHHHHhc--CccHHHHHHHHhCccCcchhhhHhhhccc--cCCCCccc
Confidence 777776644 89999999999999999999999998 48999999999999999999999999998 88899999
Q ss_pred c--eeEEecCC----CCCCCCcccChhhHHHHHhCCCcc-eEEeccCC--CHHHHHHHHHHHhccCCCCCCCCeeeeccC
Q 014248 300 D--LSFMKWES----PAHVGPRTLTLPDYVEMVTSNKTT-IFARPFEE--DDPVLEKIDDRVLNRSGNGVVPGNWCSIRG 370 (428)
Q Consensus 300 n--LRyi~W~~----~~~~~P~~l~~~D~~~l~~S~~~a-lFARKF~~--d~~vLd~Id~~ll~r~~~~~~~g~W~~~~~ 370 (428)
+ +||+.|+. ++++||+.++..|...|..++ . .|||||.. ++++++.+|.++.++.....++|+|| .
T Consensus 322 ~~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~--~~~~~~k~~~l~~nkvl~~~d~~~i~c~~~~~~~~~~~--~- 396 (439)
T KOG0799|consen 322 DECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSG--DLPFARKFPHLVANKVLDKFDPELIGCLAEFNRTGGWC--D- 396 (439)
T ss_pred chhhcceecccccccccccCCcccccccceeeeecc--hhHHHhhCchhhcccchhccCHHHHhhhhhccCccccc--c-
Confidence 9 99999998 678899999999999999998 7 99999994 89999999999999888878999999 3
Q ss_pred cccccccccCCCCcccccCCCCCccCCCchHHHHHHHHHHhhcCCCCCccc
Q 014248 371 KKKNVESLKNGEELCSASGNNIDAVKPGVYGMKLRALLSELVSDGRGKINQ 421 (428)
Q Consensus 371 ~~~~~~~~~~~~~~c~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ 421 (428)
.++.+++|++.+ +...+.|||++.|++.++..++...+|+..|
T Consensus 397 -------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 397 -------HSLRTLPCSELG-DAVKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred -------cccccccccccc-cceeeccCCcchhHHhhhhccccchhhhccC
Confidence 456789999999 9999999999999999999999999998865
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=2.1e-53 Score=409.00 Aligned_cols=238 Identities=30% Similarity=0.494 Sum_probs=161.0
Q ss_pred EEEEEEeeCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHH
Q 014248 66 LAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAA 145 (428)
Q Consensus 66 iAYLIl~~h~d~~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~A 145 (428)
|||||++|+++++++++|++++|+|+|.||||||+|++...+.++.+ +..+++||++++++..|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~------~~~~~~nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKK------LISCFPNVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHH------HHCT-TTEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHH------hcccCCceeecccccccccCCccHHHH
Confidence 79999995559999999999999999999999999999888877765 356899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHccCCCCcceEeeecCCCcceeeeeeeEeeCCccccccCccce
Q 014248 146 TLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYYKKATPIL 225 (428)
Q Consensus 146 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~~~~~~nFI~~~~~~~wk~~~R~~~~~~dp~ly~~~k~~i~ 225 (428)
||.||+.|++...+|||||||||+||||+|+++|.++|...+++.+|+++....++....|+++...++..+.
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~------- 147 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPF------- 147 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEE-------
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccc-------
Confidence 9999999999777999999999999999999999999988777889999887665433344444433321111
Q ss_pred eecccCCCCCCceeeecceeeeecHHHHHHhhhccCCchHHHHHh-hcCCCCCCchhhhHHhhcCCCCCCccccCceeEE
Q 014248 226 YAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMY-LTNVPYPLESYFHTIICNSPQFQNSTINTDLSFM 304 (428)
Q Consensus 226 ~~~~kR~~P~~~~l~~GS~W~~LsR~fveyii~~~d~lpr~ll~y-f~~t~~pdE~yFqTvl~Ns~~f~~t~vn~nLRyi 304 (428)
..++ ++|+|||||+|||++|+||+. |......+++ ++++++|||.|||||++|++.|+++++++++|||
T Consensus 148 --~~~~------~~~~GSqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i 217 (244)
T PF02485_consen 148 --FRKR------TLYKGSQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYI 217 (244)
T ss_dssp --EEEE--------EEE-S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE
T ss_pred --cccc------cccccceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEE
Confidence 1111 899999999999999999995 4444444544 4599999999999999999889999999999999
Q ss_pred ecCCCCCCCC-----cccChhhHHHHH
Q 014248 305 KWESPAHVGP-----RTLTLPDYVEMV 326 (428)
Q Consensus 305 ~W~~~~~~~P-----~~l~~~D~~~l~ 326 (428)
+|++..++|| +.++++|+++|.
T Consensus 218 ~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 218 DWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp -BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred ECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 9995456777 456888888873
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.34 E-value=4.2 Score=41.92 Aligned_cols=107 Identities=9% Similarity=0.027 Sum_probs=68.0
Q ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCcc-ceee
Q 014248 61 DYPPVLAYWICGTNGDSKKMLRLLKAIYH---PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGAS-YAID 136 (428)
Q Consensus 61 ~~p~kiAYLIl~~h~d~~~l~RLL~aLy~---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~-~~V~ 136 (428)
+..|++..+|-+ ++..+.+.++|++|.. |++.=+|-||..|.+...+.++++.+..| ..++++++... ....
T Consensus 37 ~~~p~VSVIIpa-~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~---~~~~i~vi~~~~~~~g 112 (384)
T TIGR03469 37 EAWPAVVAVVPA-RNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG---RGDRLTVVSGQPLPPG 112 (384)
T ss_pred CCCCCEEEEEec-CCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC---CCCcEEEecCCCCCCC
Confidence 456678988887 8889999999999953 44455788898887765544443222111 11378888632 2334
Q ss_pred ecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 137 KMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 137 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
|+|- ..|.-.+++.+-+...+-||++.+.+++.+-
T Consensus 113 ~~Gk--~~A~n~g~~~A~~~~~~gd~llflDaD~~~~ 147 (384)
T TIGR03469 113 WSGK--LWAVSQGIAAARTLAPPADYLLLTDADIAHG 147 (384)
T ss_pred Ccch--HHHHHHHHHHHhccCCCCCEEEEECCCCCCC
Confidence 5553 3444455555543333478999999988863
No 5
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=88.98 E-value=8.5 Score=39.49 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=60.7
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCc--eEEeCccceeee
Q 014248 63 PPVLAYWICGTNGDSKKMLRLLKAIY---HPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGN--VDVVGASYAIDK 137 (428)
Q Consensus 63 p~kiAYLIl~~h~d~~~l~RLL~aLy---~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~N--V~vv~k~~~V~w 137 (428)
.|++..+|-+ ++..+.+++.|+++- .|+-.++| +|..+++...+.+++. ...+++ |.++.......|
T Consensus 40 ~p~VSViiP~-~nee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~------~~~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPL-HGDEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRL------RADFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEEC-CCCChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHH------HHhCCCCceEEEECCCCCCC
Confidence 4568889988 888888999988883 36545544 6766665544444332 234565 555643322223
Q ss_pred cCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHH
Q 014248 138 MGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 138 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f 183 (428)
.+ -+.+..++++. ...||++.+-+++.| +.+-|.+..
T Consensus 112 ~~--K~~~l~~~~~~-----a~ge~i~~~DaD~~~--~p~~L~~lv 148 (373)
T TIGR03472 112 NR--KVSNLINMLPH-----ARHDILVIADSDISV--GPDYLRQVV 148 (373)
T ss_pred Ch--HHHHHHHHHHh-----ccCCEEEEECCCCCc--ChhHHHHHH
Confidence 22 33444443332 256899999888877 555555443
No 6
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.90 E-value=7.1 Score=36.23 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=60.4
Q ss_pred eEEEEEEeeCCCHHHHHHHHHHHc---CC-CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCc
Q 014248 65 VLAYWICGTNGDSKKMLRLLKAIY---HP-RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGV 140 (428)
Q Consensus 65 kiAYLIl~~h~d~~~l~RLL~aLy---~P-~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~ 140 (428)
+++.+|.+ +++.+.+.++|+.+. .| .+.=+|=+|..++++....++. +....++|+++..... |.
T Consensus 1 ~~sIiip~-~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~------~~~~~~~v~~i~~~~~----~~ 69 (249)
T cd02525 1 FVSIIIPV-RNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQE------YAAKDPRIRLIDNPKR----IQ 69 (249)
T ss_pred CEEEEEEc-CCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHH------HHhcCCeEEEEeCCCC----Cc
Confidence 35667766 888999999999884 22 3334566677776655444443 2234677888864421 21
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHH
Q 014248 141 SALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 141 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f 183 (428)
-.|--.+++.+ ..||++.|.+.|.+ +.+.+...+
T Consensus 70 --~~a~N~g~~~a-----~~d~v~~lD~D~~~--~~~~l~~~~ 103 (249)
T cd02525 70 --SAGLNIGIRNS-----RGDIIIRVDAHAVY--PKDYILELV 103 (249)
T ss_pred --hHHHHHHHHHh-----CCCEEEEECCCccC--CHHHHHHHH
Confidence 13333333332 57999999999986 455554433
No 7
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=85.78 E-value=13 Score=35.02 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEEEeeCCCHHHHHHHHHHHcC---CC--CEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccc
Q 014248 59 GVDYPPVLAYWICGTNGDSKKMLRLLKAIYH---PR--NQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASY 133 (428)
Q Consensus 59 ~~~~p~kiAYLIl~~h~d~~~l~RLL~aLy~---P~--n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~ 133 (428)
+...+|+++.+|.+ +++.+.+.++|+.+.. |. ..++|..|. +++...+.++++ .. . +|.++....
T Consensus 24 ~~~~~~~isVvip~-~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~-s~d~t~~~~~~~------~~-~-~v~~i~~~~ 93 (251)
T cd06439 24 DPAYLPTVTIIIPA-YNEEAVIEAKLENLLALDYPRDRLEIIVVSDG-STDGTAEIAREY------AD-K-GVKLLRFPE 93 (251)
T ss_pred CCCCCCEEEEEEec-CCcHHHHHHHHHHHHhCcCCCCcEEEEEEECC-CCccHHHHHHHH------hh-C-cEEEEEcCC
Confidence 44567789999998 8888999999988742 33 245555554 544433333321 11 1 677774322
Q ss_pred eeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHH
Q 014248 134 AIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 134 ~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f 183 (428)
..| ...|-..+++.+ .-||++++.+.+.|- .+.+...+
T Consensus 94 ---~~g--~~~a~n~gi~~a-----~~d~i~~lD~D~~~~--~~~l~~l~ 131 (251)
T cd06439 94 ---RRG--KAAALNRALALA-----TGEIVVFTDANALLD--PDALRLLV 131 (251)
T ss_pred ---CCC--hHHHHHHHHHHc-----CCCEEEEEccccCcC--HHHHHHHH
Confidence 223 344544545443 239999999999995 45554443
No 8
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=84.53 E-value=13 Score=40.36 Aligned_cols=103 Identities=8% Similarity=-0.015 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeeCCCHHHHHHHHHH----HcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeee
Q 014248 62 YPPVLAYWICGTNGDSKKMLRLLKA----IYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDK 137 (428)
Q Consensus 62 ~p~kiAYLIl~~h~d~~~l~RLL~a----Ly~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~w 137 (428)
+.|+++.+|-+ |++.+.+.++|+. ++.|+-.++|=.| .++++..+.+++ +...+|||+++..+ .-
T Consensus 64 ~~p~vaIlIPA-~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d-~ndd~T~~~v~~------l~~~~p~v~~vv~~---~~ 132 (504)
T PRK14716 64 PEKRIAIFVPA-WREADVIGRMLEHNLATLDYENYRIFVGTY-PNDPATLREVDR------LAARYPRVHLVIVP---HD 132 (504)
T ss_pred CCCceEEEEec-cCchhHHHHHHHHHHHcCCCCCeEEEEEEC-CCChhHHHHHHH------HHHHCCCeEEEEeC---CC
Confidence 36779999988 8888888887775 3335544444444 344443333332 23458898865422 12
Q ss_pred cCccHHHHHHHHHHHHHh----cCCCCcEEEecCCCcccccC
Q 014248 138 MGVSALAATLHAAALLLK----ISTNWDWFIPLSPLDYPLMS 175 (428)
Q Consensus 138 gg~S~V~AtL~~~~~lL~----~~~~wdyfi~LSgsDyPLkt 175 (428)
|+.+-..|.-.+++.+.. .+.++|+++.+-+.|.|=..
T Consensus 133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd 174 (504)
T PRK14716 133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPL 174 (504)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCcc
Confidence 334566665555655432 22468999999998886543
No 9
>PRK11204 N-glycosyltransferase; Provisional
Probab=84.01 E-value=25 Score=36.27 Aligned_cols=94 Identities=10% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeec
Q 014248 62 YPPVLAYWICGTNGDSKKMLRLLKAIY---HPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKM 138 (428)
Q Consensus 62 ~p~kiAYLIl~~h~d~~~l~RLL~aLy---~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wg 138 (428)
..|+++.+|-+ |++.+.+.+.++++. .|...+ |=+|..++++..+.+++ +....+++.++.... .+
T Consensus 52 ~~p~vsViIp~-yne~~~i~~~l~sl~~q~yp~~ei-iVvdD~s~d~t~~~l~~------~~~~~~~v~~i~~~~---n~ 120 (420)
T PRK11204 52 EYPGVSILVPC-YNEGENVEETISHLLALRYPNYEV-IAINDGSSDNTGEILDR------LAAQIPRLRVIHLAE---NQ 120 (420)
T ss_pred CCCCEEEEEec-CCCHHHHHHHHHHHHhCCCCCeEE-EEEECCCCccHHHHHHH------HHHhCCcEEEEEcCC---CC
Confidence 45679999988 888889999988874 454344 55777676665554443 223467898886222 22
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 139 GVSALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 139 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
| ...|--.+++. .+.||++.+-+++.|-
T Consensus 121 G--ka~aln~g~~~-----a~~d~i~~lDaD~~~~ 148 (420)
T PRK11204 121 G--KANALNTGAAA-----ARSEYLVCIDGDALLD 148 (420)
T ss_pred C--HHHHHHHHHHH-----cCCCEEEEECCCCCCC
Confidence 3 22332233332 3579999999999874
No 10
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=82.62 E-value=11 Score=34.76 Aligned_cols=125 Identities=20% Similarity=0.243 Sum_probs=74.4
Q ss_pred EEEeeCCCHHHHHHHHHHH----cCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHH
Q 014248 69 WICGTNGDSKKMLRLLKAI----YHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALA 144 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aL----y~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~ 144 (428)
+++++.|-..+|.+|++.+ ++++.++ |--+.+.+.+.-.++.+......-....+..+-+.+.. .+.=++++.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~i-vt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~--~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYI-VTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSY--LTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEE-EEcCCcccHHHHHHHHHhccccceeeccceEEEechhh--HhhHHHHHH
Confidence 4556677889999999999 6655333 33333333332222322111000012234555444331 233478889
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHccCCCCcceEeeec
Q 014248 145 ATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTT 197 (428)
Q Consensus 145 AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~~~~~~nFI~~~~ 197 (428)
+.+.++..+++..+| =-+-|=.|.++|+.=..-+.+.|.-.....-|||...
T Consensus 80 ~~~~~~~il~r~rPd-vii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 80 AFLQSLRILRRERPD-VIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHHHHHhCCC-EEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 999999999886533 1344667889999988888877765445567787653
No 11
>PRK10063 putative glycosyl transferase; Provisional
Probab=80.64 E-value=42 Score=32.40 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=63.0
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHHcC-----CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeec
Q 014248 64 PVLAYWICGTNGDSKKMLRLLKAIYH-----PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKM 138 (428)
Q Consensus 64 ~kiAYLIl~~h~d~~~l~RLL~aLy~-----P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wg 138 (428)
|++..+|.+ ++..+.+.+.|+.|.. ..+.=+|=||..|++...+.++++. ...++.++..++ .
T Consensus 1 ~~vSVIi~~-yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-------~~~~i~~i~~~~----~ 68 (248)
T PRK10063 1 MLLSVITVA-FRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-------GIFNLRFVSEPD----N 68 (248)
T ss_pred CeEEEEEEe-CCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-------ccCCEEEEECCC----C
Confidence 577888877 8889999999888841 2345578899988776544444311 113577765332 2
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHH
Q 014248 139 GVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 139 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f 183 (428)
|.. .|.-.+++.+ .-+|++.|.+.|...-...++...+
T Consensus 69 G~~--~A~N~Gi~~a-----~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 69 GIY--DAMNKGIAMA-----QGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CHH--HHHHHHHHHc-----CCCEEEEEeCCcccCcCHHHHHHHH
Confidence 322 3333444433 2489999999999876443444444
No 12
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=80.58 E-value=19 Score=33.51 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=57.4
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHHcC---CC-CEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecC
Q 014248 64 PVLAYWICGTNGDSKKMLRLLKAIYH---PR-NQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMG 139 (428)
Q Consensus 64 ~kiAYLIl~~h~d~~~l~RLL~aLy~---P~-n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg 139 (428)
|++..+|.+ ++..+.+.++|++|.. |. ..-+|=+|. +++.....+++..+..+ ....+|.++...... |
T Consensus 1 p~vSViIp~-yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~--~~~~~i~~~~~~~~~---G 73 (232)
T cd06437 1 PMVTVQLPV-FNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA--AQGVNIKHVRRADRT---G 73 (232)
T ss_pred CceEEEEec-CCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh--hcCCceEEEECCCCC---C
Confidence 357888887 8999999999999843 33 234455786 66655555544332111 123456555322221 2
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHH
Q 014248 140 VSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLH 181 (428)
Q Consensus 140 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~ 181 (428)
+. ..|.-.++ +. ..-||++++-+.+++ ..+-|.+
T Consensus 74 ~k-~~a~n~g~----~~-a~~~~i~~~DaD~~~--~~~~l~~ 107 (232)
T cd06437 74 YK-AGALAEGM----KV-AKGEYVAIFDADFVP--PPDFLQK 107 (232)
T ss_pred Cc-hHHHHHHH----Hh-CCCCEEEEEcCCCCC--ChHHHHH
Confidence 21 11111222 22 256999999999987 3444443
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=79.41 E-value=5 Score=37.12 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=54.2
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCc--eEEeCccceeeec
Q 014248 64 PVLAYWICGTNGDSKKMLRLLKAIYH---PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGN--VDVVGASYAIDKM 138 (428)
Q Consensus 64 ~kiAYLIl~~h~d~~~l~RLL~aLy~---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~N--V~vv~k~~~V~wg 138 (428)
|+++.+|.+ ++..+.+.+.|+++-+ |+-.++| +|..++++..+.+++.. ..+++ |+++.... -.
T Consensus 1 P~v~Vvip~-~~~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~------~~~~~~~v~vi~~~~---~~ 69 (228)
T PF13641_consen 1 PRVSVVIPA-YNEDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAEILRALA------ARYPRVRVRVIRRPR---NP 69 (228)
T ss_dssp --EEEE--B-SS-HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCTTHHHHH------HTTGG-GEEEEE-------H
T ss_pred CEEEEEEEe-cCCHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHHHHHHHH------HHcCCCceEEeecCC---CC
Confidence 568899987 8888999999999953 4534444 56545444333333322 23443 56664321 11
Q ss_pred Cc-cHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHccC-CCCcceEe
Q 014248 139 GV-SALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFL-PRDLNFID 194 (428)
Q Consensus 139 g~-S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~~-~~~~nFI~ 194 (428)
|. +...|..++++.+ ..||++.|.+.+.| ..+-|...+... ..+..++.
T Consensus 70 g~~~k~~a~n~~~~~~-----~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 70 GPGGKARALNEALAAA-----RGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHHHHHHHHHHH--------SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred CcchHHHHHHHHHHhc-----CCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 32 3444445545442 37899999999988 443343322221 34555554
No 14
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=78.61 E-value=42 Score=35.33 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=59.2
Q ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHc---CCCCE-EEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceee
Q 014248 61 DYPPVLAYWICGTNGDSKKMLRLLKAIY---HPRNQ-YLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAID 136 (428)
Q Consensus 61 ~~p~kiAYLIl~~h~d~~~l~RLL~aLy---~P~n~-y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~ 136 (428)
+..|+++.+|-+ ++..+.+.++|+++. .|... -+|=+|..++++..+.+++. ...++++.+..... .
T Consensus 46 ~~~P~vsVIIP~-yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~------~~~~~~v~v~~~~~--~ 116 (439)
T TIGR03111 46 GKLPDITIIIPV-YNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA------QNEFPGLSLRYMNS--D 116 (439)
T ss_pred CCCCCEEEEEEe-CCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH------HHhCCCeEEEEeCC--C
Confidence 445789999988 888899999999984 35433 36777888877654444331 23457777642111 1
Q ss_pred ecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 137 KMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 137 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
+|.+ .|--.++ +.. +-||++.+.+++.|-
T Consensus 117 -~Gka--~AlN~gl----~~s-~g~~v~~~DaD~~~~ 145 (439)
T TIGR03111 117 -QGKA--KALNAAI----YNS-IGKYIIHIDSDGKLH 145 (439)
T ss_pred -CCHH--HHHHHHH----HHc-cCCEEEEECCCCCcC
Confidence 3432 2222222 222 347999999999984
No 15
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=77.70 E-value=35 Score=35.88 Aligned_cols=94 Identities=7% Similarity=0.060 Sum_probs=60.0
Q ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeec
Q 014248 62 YPPVLAYWICGTNGDSKKMLRLLKAIY---HPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKM 138 (428)
Q Consensus 62 ~p~kiAYLIl~~h~d~~~l~RLL~aLy---~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wg 138 (428)
..|+++.+|-+ +++.+.+.++++++- .|+ .=+|-||..++++..+.+++. ....+++.++... ..+
T Consensus 73 ~~p~vsViIP~-yNE~~~i~~~l~sll~q~yp~-~eIivVdDgs~D~t~~~~~~~------~~~~~~v~vv~~~---~n~ 141 (444)
T PRK14583 73 GHPLVSILVPC-FNEGLNARETIHAALAQTYTN-IEVIAINDGSSDDTAQVLDAL------LAEDPRLRVIHLA---HNQ 141 (444)
T ss_pred CCCcEEEEEEe-CCCHHHHHHHHHHHHcCCCCC-eEEEEEECCCCccHHHHHHHH------HHhCCCEEEEEeC---CCC
Confidence 34679999998 888888999998874 354 335667777766655555442 2346788887522 233
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 139 GVSALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 139 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
| .-.|- ...++. .+.||++.+.+++.|-
T Consensus 142 G--ka~Al----N~gl~~-a~~d~iv~lDAD~~~~ 169 (444)
T PRK14583 142 G--KAIAL----RMGAAA-ARSEYLVCIDGDALLD 169 (444)
T ss_pred C--HHHHH----HHHHHh-CCCCEEEEECCCCCcC
Confidence 4 22222 222332 3679999999999874
No 16
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=76.52 E-value=36 Score=30.91 Aligned_cols=103 Identities=7% Similarity=0.011 Sum_probs=56.5
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccC--ceEEeCccceeeec
Q 014248 64 PVLAYWICGTNGDSKKMLRLLKAIY---HPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFG--NVDVVGASYAIDKM 138 (428)
Q Consensus 64 ~kiAYLIl~~h~d~~~l~RLL~aLy---~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~--NV~vv~k~~~V~wg 138 (428)
|++..+|-+ ++..+.+.++|+.|. +|. .=+|=||-.+++...+.++++. ..++ ++.++..... .|
T Consensus 1 p~vsviip~-~n~~~~l~~~L~sl~~q~~~~-~eiivVdd~s~d~t~~~~~~~~------~~~~~~~~~~~~~~~~--~g 70 (196)
T cd02520 1 PGVSILKPL-CGVDPNLYENLESFFQQDYPK-YEILFCVQDEDDPAIPVVRKLI------AKYPNVDARLLIGGEK--VG 70 (196)
T ss_pred CCeEEEEec-CCCCccHHHHHHHHHhccCCC-eEEEEEeCCCcchHHHHHHHHH------HHCCCCcEEEEecCCc--CC
Confidence 357788887 777778889888885 244 3345567767665444444322 2244 3445432222 23
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHH
Q 014248 139 GVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 139 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f 183 (428)
+.....+...++ +. ..-||++.+-+.+.+ +.+.|.+.+
T Consensus 71 ~~~~~~~~n~g~----~~-a~~d~i~~~D~D~~~--~~~~l~~l~ 108 (196)
T cd02520 71 INPKVNNLIKGY----EE-ARYDILVISDSDISV--PPDYLRRMV 108 (196)
T ss_pred CCHhHHHHHHHH----Hh-CCCCEEEEECCCceE--ChhHHHHHH
Confidence 222222222223 32 246899999887764 555554433
No 17
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=76.18 E-value=48 Score=29.67 Aligned_cols=104 Identities=17% Similarity=0.084 Sum_probs=58.6
Q ss_pred CeEEEEEEeeCCCH-HHHHHHHHHHcCC--CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCc
Q 014248 64 PVLAYWICGTNGDS-KKMLRLLKAIYHP--RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGV 140 (428)
Q Consensus 64 ~kiAYLIl~~h~d~-~~l~RLL~aLy~P--~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~ 140 (428)
|++.++|.+ ++.. +.+.++|++|..- .+.-+|=+|..+++..-.++.+.. ....+++.++... .-.
T Consensus 1 p~vsiii~~-~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~-----~~~~~~~~~~~~~---~~~-- 69 (202)
T cd04184 1 PLISIVMPV-YNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKY-----AAQDPRIKVVFRE---ENG-- 69 (202)
T ss_pred CeEEEEEec-ccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHH-----HhcCCCEEEEEcc---cCC--
Confidence 457788887 7777 9999999999532 233456667766554333332211 1224567765322 122
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHH
Q 014248 141 SALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAF 183 (428)
Q Consensus 141 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f 183 (428)
....|--.+++.+ .-||+..+.+.|.+-.. .+.+++.+
T Consensus 70 g~~~a~n~g~~~a-----~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 70 GISAATNSALELA-----TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred CHHHHHHHHHHhh-----cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 2344444455443 34899999988877432 24444444
No 18
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=75.91 E-value=14 Score=31.37 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=60.9
Q ss_pred EEEeeCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYH---PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAA 145 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~A 145 (428)
+|.+ ++..+.+.++|.+|-. +... +|=+|..++++..+.++++.+ ...++.++..... ...-.+
T Consensus 3 vip~-~n~~~~l~~~l~sl~~q~~~~~e-iivvdd~s~d~~~~~~~~~~~------~~~~i~~i~~~~n-----~g~~~~ 69 (169)
T PF00535_consen 3 VIPT-YNEAEYLERTLESLLKQTDPDFE-IIVVDDGSTDETEEILEEYAE------SDPNIRYIRNPEN-----LGFSAA 69 (169)
T ss_dssp EEEE-SS-TTTHHHHHHHHHHHSGCEEE-EEEEECS-SSSHHHHHHHHHC------CSTTEEEEEHCCC-----SHHHHH
T ss_pred EEEe-eCCHHHHHHHHHHHhhccCCCEE-EEEeccccccccccccccccc------ccccccccccccc-----cccccc
Confidence 3444 7888888888887742 3334 455777676666655554322 3578888864432 134445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHccC
Q 014248 146 TLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFTFL 186 (428)
Q Consensus 146 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~~~ 186 (428)
.-.+++.+. -+|++.+.+.|++... .+++.+.+...
T Consensus 70 ~n~~~~~a~-----~~~i~~ld~D~~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 70 RNRGIKHAK-----GEYILFLDDDDIISPDWLEELVEALEKN 106 (169)
T ss_dssp HHHHHHH-------SSEEEEEETTEEE-TTHHHHHHHHHHHC
T ss_pred ccccccccc-----eeEEEEeCCCceEcHHHHHHHHHHHHhC
Confidence 555555542 2499999999999887 77777777653
No 19
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=75.51 E-value=19 Score=35.80 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=57.5
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHHcCCCC--EEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCcc
Q 014248 64 PVLAYWICGTNGDSKKMLRLLKAIYHPRN--QYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVS 141 (428)
Q Consensus 64 ~kiAYLIl~~h~d~~~l~RLL~aLy~P~n--~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S 141 (428)
|+++.+|. +++..+.+...|..|..... .++|=+|..+++.....++.. .+++|.++......-|+|--
T Consensus 3 ~~i~~iiv-~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~--------~~~~v~~i~~~~NlG~agg~ 73 (305)
T COG1216 3 PKISIIIV-TYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKAR--------FFPNVRLIENGENLGFAGGF 73 (305)
T ss_pred cceEEEEE-ecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhh--------cCCcEEEEEcCCCccchhhh
Confidence 45555555 59999999999998864333 333356888877766655431 16999999877666665543
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEecCCCc
Q 014248 142 ALAATLHAAALLLKISTNWDWFIPLSPLD 170 (428)
Q Consensus 142 ~V~AtL~~~~~lL~~~~~wdyfi~LSgsD 170 (428)
. .+++.++... .+| +++-..|
T Consensus 74 n-----~g~~~a~~~~--~~~-~l~LN~D 94 (305)
T COG1216 74 N-----RGIKYALAKG--DDY-VLLLNPD 94 (305)
T ss_pred h-----HHHHHHhcCC--CcE-EEEEcCC
Confidence 3 5677777643 224 4444555
No 20
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=75.02 E-value=30 Score=30.71 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=50.1
Q ss_pred eeCCCHHHHHHHHHHHc----C-CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHH
Q 014248 72 GTNGDSKKMLRLLKAIY----H-PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAAT 146 (428)
Q Consensus 72 ~~h~d~~~l~RLL~aLy----~-P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~At 146 (428)
.+++..+.+.++|+.|. . ..+.=+|=+|..+++.....++.+ ....+||.++.... ..| ...|.
T Consensus 4 p~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~------~~~~~~i~~i~~~~--n~G---~~~a~ 72 (181)
T cd04187 4 PVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILREL------AARDPRVKVIRLSR--NFG---QQAAL 72 (181)
T ss_pred eecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHH------HhhCCCEEEEEecC--CCC---cHHHH
Confidence 34888888888877663 1 122334557777776544444332 22357888875221 222 23343
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHH
Q 014248 147 LHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 147 L~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f 183 (428)
..+++.+ . -||++.+.+.+. + +.+.+...+
T Consensus 73 n~g~~~a----~-~d~i~~~D~D~~-~-~~~~l~~l~ 102 (181)
T cd04187 73 LAGLDHA----R-GDAVITMDADLQ-D-PPELIPEML 102 (181)
T ss_pred HHHHHhc----C-CCEEEEEeCCCC-C-CHHHHHHHH
Confidence 4444433 2 288888887555 4 344444333
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=72.99 E-value=32 Score=31.55 Aligned_cols=101 Identities=17% Similarity=0.102 Sum_probs=54.3
Q ss_pred CeEEEEEEeeCCC-HHHHHHHHHHHcC---CCC-EEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeec
Q 014248 64 PVLAYWICGTNGD-SKKMLRLLKAIYH---PRN-QYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKM 138 (428)
Q Consensus 64 ~kiAYLIl~~h~d-~~~l~RLL~aLy~---P~n-~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wg 138 (428)
|++..+|-+ +++ .+.+++.|++|-. |.. .=+|=+|..+++...+.++++. . ..++.++... ..+|
T Consensus 1 p~vsviip~-~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~------~-~~~~~~~~~~--~~~~ 70 (234)
T cd06421 1 PTVDVFIPT-YNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELG------V-EYGYRYLTRP--DNRH 70 (234)
T ss_pred CceEEEEec-CCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhh------c-ccCceEEEeC--CCCC
Confidence 356777877 664 5788888888842 331 2344477766655444333211 1 1244554322 2344
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHH
Q 014248 139 GVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 139 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f 183 (428)
+.. .+.-.+++.+ +-||++.|.+.|++- .+.|....
T Consensus 71 ~~~--~~~n~~~~~a-----~~d~i~~lD~D~~~~--~~~l~~l~ 106 (234)
T cd06421 71 AKA--GNLNNALAHT-----TGDFVAILDADHVPT--PDFLRRTL 106 (234)
T ss_pred CcH--HHHHHHHHhC-----CCCEEEEEccccCcC--ccHHHHHH
Confidence 322 1122323222 569999999999983 45554443
No 22
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=72.83 E-value=76 Score=32.18 Aligned_cols=112 Identities=9% Similarity=0.023 Sum_probs=63.0
Q ss_pred CCCCCeEEEEEEeeCCCHHHHHHHHHHHcC----------CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEe
Q 014248 60 VDYPPVLAYWICGTNGDSKKMLRLLKAIYH----------PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVV 129 (428)
Q Consensus 60 ~~~p~kiAYLIl~~h~d~~~l~RLL~aLy~----------P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv 129 (428)
.+.+|.+..+|-+ ++..+.+.++|+.+.. +.+.=+|=||..|++...+.++++.+... ..-.+++++
T Consensus 66 ~~~~~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~--~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI--NPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC--CCCCcEEEE
Confidence 4567789999988 8888888888887742 22445677888887665444443222100 001358887
Q ss_pred CccceeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcc-cccChhHHHHHHc
Q 014248 130 GASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDY-PLMSQDDVLHAFT 184 (428)
Q Consensus 130 ~k~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDy-PLkt~ddi~~~f~ 184 (428)
..... .|. -.|...+++.+ .-||++++-+.+. +....+.+.+.+.
T Consensus 143 ~~~~N---~G~--~~A~~~Gi~~a-----~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 143 SLLRN---KGK--GGAVRIGMLAS-----RGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred EcCCC---CCh--HHHHHHHHHHc-----cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 53221 222 23333344432 2378888877664 3344445555443
No 23
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=72.15 E-value=25 Score=33.99 Aligned_cols=83 Identities=8% Similarity=0.013 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHHHHHHHHHH
Q 014248 75 GDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLL 154 (428)
Q Consensus 75 ~d~~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL 154 (428)
.+.+.++++|++|.. ++.-+|=||..++.. ..+.. +....++|+++...... | .-.|--.+++.++
T Consensus 5 ~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~--~~~~~------~~~~~~~i~~i~~~~N~--G---~a~a~N~Gi~~a~ 70 (281)
T TIGR01556 5 PDLEHLGELITSLPK-QVDRIIAVDNSPHSD--QPLKN------ARLRGQKIALIHLGDNQ--G---IAGAQNQGLDASF 70 (281)
T ss_pred ccHHHHHHHHHHHHh-cCCEEEEEECcCCCc--HhHHH------HhccCCCeEEEECCCCc--c---hHHHHHHHHHHHH
Confidence 357899999999984 466789999887533 12222 12346889998643221 2 2224444566665
Q ss_pred hcCCCCcEEEecCCCcccc
Q 014248 155 KISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 155 ~~~~~wdyfi~LSgsDyPL 173 (428)
+ .+.||+++|-..+.|-
T Consensus 71 ~--~~~d~i~~lD~D~~~~ 87 (281)
T TIGR01556 71 R--RGVQGVLLLDQDSRPG 87 (281)
T ss_pred H--CCCCEEEEECCCCCCC
Confidence 5 3679999999999996
No 24
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=72.12 E-value=42 Score=30.96 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=57.0
Q ss_pred EEEEEEeeCCCH-HHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHH
Q 014248 66 LAYWICGTNGDS-KKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALA 144 (428)
Q Consensus 66 iAYLIl~~h~d~-~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~ 144 (428)
+..+|.+ ++.. +.+.++|+.+......=+|=||..+++.....+.. ....+.+.++.. .++|. ..
T Consensus 2 isVvIp~-~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~-------~~~~~~~~v~~~----~~~g~--~~ 67 (235)
T cd06434 2 VTVIIPV-YDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQ-------TVKYGGIFVITV----PHPGK--RR 67 (235)
T ss_pred eEEEEee-cCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHh-------hccCCcEEEEec----CCCCh--HH
Confidence 5667777 7777 99999999997643333455666666554444321 123566666643 34453 33
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCCcccccC
Q 014248 145 ATLHAAALLLKISTNWDWFIPLSPLDYPLMS 175 (428)
Q Consensus 145 AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt 175 (428)
|.-.+++.+ +-||++.|-+.+.|-..
T Consensus 68 a~n~g~~~a-----~~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 68 ALAEGIRHV-----TTDIVVLLDSDTVWPPN 93 (235)
T ss_pred HHHHHHHHh-----CCCEEEEECCCceeChh
Confidence 433444433 56999999999998755
No 25
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=70.97 E-value=94 Score=29.28 Aligned_cols=104 Identities=10% Similarity=0.123 Sum_probs=59.7
Q ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHH----cCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhcc--CceEEeCccce
Q 014248 61 DYPPVLAYWICGTNGDSKKMLRLLKAI----YHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAF--GNVDVVGASYA 134 (428)
Q Consensus 61 ~~p~kiAYLIl~~h~d~~~l~RLL~aL----y~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~--~NV~vv~k~~~ 134 (428)
+..|++..+|-+ ++..+.+..+++.| ..+.+.=+|-||..|++...+.++++. ..+ .+|.++...
T Consensus 6 ~~~~~vsVvIp~-yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~------~~~~~~~v~~~~~~-- 76 (243)
T PLN02726 6 EGAMKYSIIVPT-YNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQ------KVYGEDRILLRPRP-- 76 (243)
T ss_pred CCCceEEEEEcc-CCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHH------HhcCCCcEEEEecC--
Confidence 445788888887 88888887776655 233345578888888776544444321 122 356665322
Q ss_pred eeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHH
Q 014248 135 IDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 135 V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f 183 (428)
.-.|++ .|...+++.+ .-+|++.|.+.+.+ ..+.|...+
T Consensus 77 -~n~G~~--~a~n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~l~ 115 (243)
T PLN02726 77 -GKLGLG--TAYIHGLKHA-----SGDFVVIMDADLSH--HPKYLPSFI 115 (243)
T ss_pred -CCCCHH--HHHHHHHHHc-----CCCEEEEEcCCCCC--CHHHHHHHH
Confidence 122332 2333444332 34799999998874 555554433
No 26
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=70.02 E-value=36 Score=29.95 Aligned_cols=105 Identities=11% Similarity=0.098 Sum_probs=59.1
Q ss_pred EEeeCCCHHHHHHHHHHHcCC----CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHH
Q 014248 70 ICGTNGDSKKMLRLLKAIYHP----RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAA 145 (428)
Q Consensus 70 Il~~h~d~~~l~RLL~aLy~P----~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~A 145 (428)
|.+ ++..+.+.++|+.+..- .+.=+|=+|..+++.....++.+. ...+.++++..... .+...|
T Consensus 3 i~~-~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~------~~~~~~~~~~~~~n-----~G~~~a 70 (185)
T cd04179 3 IPA-YNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA------ARVPRVRVIRLSRN-----FGKGAA 70 (185)
T ss_pred ecc-cChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH------HhCCCeEEEEccCC-----CCccHH
Confidence 444 88888888888888532 245567777777666555554432 23455555432221 123345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHcc-CCCCcceE
Q 014248 146 TLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTF-LPRDLNFI 193 (428)
Q Consensus 146 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~-~~~~~nFI 193 (428)
...+++.+ .. ||++.|.+.|.+ +.+.+...+.. ...+..++
T Consensus 71 ~n~g~~~a----~g-d~i~~lD~D~~~--~~~~l~~l~~~~~~~~~~~v 112 (185)
T cd04179 71 VRAGFKAA----RG-DIVVTMDADLQH--PPEDIPKLLEKLLEGGADVV 112 (185)
T ss_pred HHHHHHHh----cC-CEEEEEeCCCCC--CHHHHHHHHHHHhccCCcEE
Confidence 45544443 22 899999999875 55555544442 23344444
No 27
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=69.94 E-value=55 Score=30.72 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=57.9
Q ss_pred EEEEEEeeCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHH
Q 014248 66 LAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAA 145 (428)
Q Consensus 66 iAYLIl~~h~d~~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~A 145 (428)
+..+|.+ ++..+.+.++|++|.. ...=+|=||..|++... ++++ ..++.|+.. .|+|++.-
T Consensus 2 isvii~~-~Ne~~~l~~~l~sl~~-~~~eiivvD~gStD~t~-~i~~----------~~~~~v~~~----~~~g~~~~-- 62 (229)
T cd02511 2 LSVVIIT-KNEERNIERCLESVKW-AVDEIIVVDSGSTDRTV-EIAK----------EYGAKVYQR----WWDGFGAQ-- 62 (229)
T ss_pred EEEEEEe-CCcHHHHHHHHHHHhc-ccCEEEEEeCCCCccHH-HHHH----------HcCCEEEEC----CCCChHHH--
Confidence 6777877 8889999999999973 31234568888876543 3322 246667642 67776532
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHc
Q 014248 146 TLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFT 184 (428)
Q Consensus 146 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~ 184 (428)
--.+++. ..-||++.|-+.+.+-.. .+++.+.+.
T Consensus 63 ~n~~~~~-----a~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 63 RNFALEL-----ATNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred HHHHHHh-----CCCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 1222222 134699999999986543 334444443
No 28
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=69.28 E-value=3 Score=29.64 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=23.2
Q ss_pred eCCCHHHHHHHHHHHcCCCCEEEEEEeC
Q 014248 73 TNGDSKKMLRLLKAIYHPRNQYLLQLDA 100 (428)
Q Consensus 73 ~h~d~~~l~RLL~aLy~P~n~y~IHvD~ 100 (428)
+|.|.++|..+++.+ .|++.++||=|.
T Consensus 16 gHad~~~L~~~i~~~-~p~~vilVHGe~ 42 (43)
T PF07521_consen 16 GHADREELLEFIEQL-NPRKVILVHGEP 42 (43)
T ss_dssp SS-BHHHHHHHHHHH-CSSEEEEESSEH
T ss_pred CCCCHHHHHHHHHhc-CCCEEEEecCCC
Confidence 499999999999999 799999999653
No 29
>PRK10073 putative glycosyl transferase; Provisional
Probab=67.64 E-value=66 Score=32.48 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=60.6
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCc
Q 014248 63 PPVLAYWICGTNGDSKKMLRLLKAIYHP--RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGV 140 (428)
Q Consensus 63 p~kiAYLIl~~h~d~~~l~RLL~aLy~P--~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~ 140 (428)
.|++..+|-+ ++..+.+.+.|+.|... .+.=+|=||-.|++...+-+.++ ....++|.++.+.+ +|.
T Consensus 5 ~p~vSVIIP~-yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~------~~~~~~i~vi~~~n----~G~ 73 (328)
T PRK10073 5 TPKLSIIIPL-YNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHY------AENYPHVRLLHQAN----AGV 73 (328)
T ss_pred CCeEEEEEec-cCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHH------HhhCCCEEEEECCC----CCh
Confidence 3578888887 88889999999999532 24446667777766554444432 23467899886432 343
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 141 SALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 141 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
..|--.+++.+ .=+|++.|.+.|+..
T Consensus 74 --~~arN~gl~~a-----~g~yi~flD~DD~~~ 99 (328)
T PRK10073 74 --SVARNTGLAVA-----TGKYVAFPDADDVVY 99 (328)
T ss_pred --HHHHHHHHHhC-----CCCEEEEECCCCccC
Confidence 33333444432 238999999999964
No 30
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.78 E-value=94 Score=27.81 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=52.8
Q ss_pred EEEeeCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCChhHHHHHHHHhhhhhhhhccC-ceEEeCccceeeecCccHHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYHPR--NQYLLQLDAGAPESERAELALKVQSEIVFKAFG-NVDVVGASYAIDKMGVSALAA 145 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~P~--n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~-NV~vv~k~~~V~wgg~S~V~A 145 (428)
+|-+ ++..+.|.+.|+.+.... ..=+|=||..+++...+.++++.. ..+ ++.++. .-.+.+...+
T Consensus 3 vIp~-yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~------~~~~~~~~~~-----~~~~~G~~~~ 70 (214)
T cd04196 3 LMAT-YNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYID------KDPFIIILIR-----NGKNLGVARN 70 (214)
T ss_pred EEEe-cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHh------cCCceEEEEe-----CCCCccHHHH
Confidence 4444 888889999999986421 334666787777665555544322 222 444443 2233444444
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCccccc
Q 014248 146 TLHAAALLLKISTNWDWFIPLSPLDYPLM 174 (428)
Q Consensus 146 tL~~~~~lL~~~~~wdyfi~LSgsDyPLk 174 (428)
.-.+++ . ...+|+++|.+.|++..
T Consensus 71 ~n~g~~----~-~~g~~v~~ld~Dd~~~~ 94 (214)
T cd04196 71 FESLLQ----A-ADGDYVFFCDQDDIWLP 94 (214)
T ss_pred HHHHHH----h-CCCCEEEEECCCcccCh
Confidence 444422 2 35799999999998753
No 31
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=64.41 E-value=67 Score=29.48 Aligned_cols=105 Identities=10% Similarity=-0.077 Sum_probs=58.1
Q ss_pred EEEeeCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYH---PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAA 145 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~A 145 (428)
+|-+ ++..+.+.++|+.|.. |+..=+|-||..+++.....++++.+.. ...+++++.....-. .+-+.-.|
T Consensus 2 iIp~-yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~----~~~~~~~~~~~~~~~-~~~G~~~a 75 (219)
T cd06913 2 ILPV-HNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL----EDSGVIVLVGSHNSP-SPKGVGYA 75 (219)
T ss_pred EEee-cCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC----cccCeEEEEecccCC-CCccHHHH
Confidence 4444 8888999999999953 3345678889888766554444432211 134566553111101 11223333
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHc
Q 014248 146 TLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFT 184 (428)
Q Consensus 146 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~ 184 (428)
.-.+++.+ .-||++.|.+.|++.-. .+.+...+.
T Consensus 76 ~N~g~~~a-----~gd~i~~lD~D~~~~~~~l~~~~~~~~ 110 (219)
T cd06913 76 KNQAIAQS-----SGRYLCFLDSDDVMMPQRIRLQYEAAL 110 (219)
T ss_pred HHHHHHhc-----CCCEEEEECCCccCChhHHHHHHHHHH
Confidence 33433332 34899999999985543 233444443
No 32
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=64.09 E-value=56 Score=29.69 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=52.7
Q ss_pred EEEeeCCCHHHHHHHHHHHc---CCC--CEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHH
Q 014248 69 WICGTNGDSKKMLRLLKAIY---HPR--NQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSAL 143 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy---~P~--n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V 143 (428)
+|.+ +++.+.++++|++|. +|. ..+ |=||-.+++...+.++ +.. ....++|.++.... ...+| ..
T Consensus 2 iip~-~n~~~~l~~~l~sl~~q~~~~~~~ei-ivvdd~s~d~t~~~~~-~~~----~~~~~~v~~~~~~~-~~~~g--~~ 71 (229)
T cd04192 2 VIAA-RNEAENLPRLLQSLSALDYPKEKFEV-ILVDDHSTDGTVQILE-FAA----AKPNFQLKILNNSR-VSISG--KK 71 (229)
T ss_pred EEEe-cCcHHHHHHHHHHHHhCCCCCCceEE-EEEcCCCCcChHHHHH-HHH----hCCCcceEEeeccC-cccch--hH
Confidence 3444 888999999999983 343 344 4455555544333332 111 12246777765332 12222 22
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHH
Q 014248 144 AATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 144 ~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f 183 (428)
.|-..+++. ..-||++.+.+.|.+ ..+.|...+
T Consensus 72 ~a~n~g~~~-----~~~d~i~~~D~D~~~--~~~~l~~l~ 104 (229)
T cd04192 72 NALTTAIKA-----AKGDWIVTTDADCVV--PSNWLLTFV 104 (229)
T ss_pred HHHHHHHHH-----hcCCEEEEECCCccc--CHHHHHHHH
Confidence 232233322 245899999999977 345554443
No 33
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=63.42 E-value=44 Score=33.73 Aligned_cols=94 Identities=12% Similarity=0.131 Sum_probs=52.2
Q ss_pred CCeEEEEEEeeCCC--HHHHHHHHHHH-----------cCCCCEEEEEEe--CCC-ChhHHHHHHHHhhhhhhhh---cc
Q 014248 63 PPVLAYWICGTNGD--SKKMLRLLKAI-----------YHPRNQYLLQLD--AGA-PESERAELALKVQSEIVFK---AF 123 (428)
Q Consensus 63 p~kiAYLIl~~h~d--~~~l~RLL~aL-----------y~P~n~y~IHvD--~ks-~~~~~~~L~~~v~~~~~~~---~~ 123 (428)
...+|||+.|..+- -.....+.+++ .||.|.. ++| .+. +.+ +++..++..+... .-
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~--~~d~~g~~i~vd---~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANII--LFDIFDKDLSKS---EFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceE--EeccCCCcCCHH---HHHHHHHHhccCCcccCC
Confidence 35679999884443 24556666666 2565554 447 332 323 3333333333222 24
Q ss_pred CceEEeCccceeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCC
Q 014248 124 GNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSP 168 (428)
Q Consensus 124 ~NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 168 (428)
..|.++... -.|-.+..+++--.|+..++.-+||+++.
T Consensus 91 ~KvvII~~~-------e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 91 KKILIIKNI-------EKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred ceEEEEecc-------cccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 566666543 23334444455556677788889999886
No 34
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=62.73 E-value=77 Score=31.01 Aligned_cols=96 Identities=16% Similarity=0.102 Sum_probs=58.9
Q ss_pred EEEeeCCCH-HHHHHHHHHHcC---CC-CEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHH
Q 014248 69 WICGTNGDS-KKMLRLLKAIYH---PR-NQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSAL 143 (428)
Q Consensus 69 LIl~~h~d~-~~l~RLL~aLy~---P~-n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V 143 (428)
+|.+ ++.. +.++++|.+|.. +. ..=+|-||..|++.....+.+.. .....++|+++.... =.|++
T Consensus 3 IIp~-~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~----~~~~~~~v~vi~~~~---n~G~~-- 72 (299)
T cd02510 3 IIIF-HNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEY----YKKYLPKVKVLRLKK---REGLI-- 72 (299)
T ss_pred EEEE-ecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHH----HhhcCCcEEEEEcCC---CCCHH--
Confidence 4555 7777 999999999963 21 23589999988776555443211 123457899985322 12333
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHH
Q 014248 144 AATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLH 181 (428)
Q Consensus 144 ~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~ 181 (428)
.|--.+++.+ .-||++.|.+.+.+ +.+-|..
T Consensus 73 ~a~N~g~~~A-----~gd~i~fLD~D~~~--~~~wL~~ 103 (299)
T cd02510 73 RARIAGARAA-----TGDVLVFLDSHCEV--NVGWLEP 103 (299)
T ss_pred HHHHHHHHHc-----cCCEEEEEeCCccc--CccHHHH
Confidence 4444444433 24899999999987 4444443
No 35
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=62.01 E-value=98 Score=26.20 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=50.5
Q ss_pred EEEeeCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYH---PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAA 145 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~A 145 (428)
+|.+ ++..+.+.++++.|.. +.-.+ |=+|..+.+...+.+.+ ..+++.++.... .. +...|
T Consensus 2 ii~~-~~~~~~l~~~l~sl~~~~~~~~~i-iivdd~s~~~~~~~~~~---------~~~~~~~~~~~~---~~--g~~~a 65 (166)
T cd04186 2 IIVN-YNSLEYLKACLDSLLAQTYPDFEV-IVVDNASTDGSVELLRE---------LFPEVRLIRNGE---NL--GFGAG 65 (166)
T ss_pred EEEe-cCCHHHHHHHHHHHHhccCCCeEE-EEEECCCCchHHHHHHH---------hCCCeEEEecCC---Cc--ChHHH
Confidence 4555 7889999999999953 23344 44666666655554443 123677664321 12 22334
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 146 TLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 146 tL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
--.+++.+ +.+|++.+.+.+++-
T Consensus 66 ~n~~~~~~-----~~~~i~~~D~D~~~~ 88 (166)
T cd04186 66 NNQGIREA-----KGDYVLLLNPDTVVE 88 (166)
T ss_pred hhHHHhhC-----CCCEEEEECCCcEEC
Confidence 44444443 578999999988874
No 36
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=60.11 E-value=98 Score=29.02 Aligned_cols=94 Identities=18% Similarity=0.098 Sum_probs=52.8
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHHcC---CC-CEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecC
Q 014248 64 PVLAYWICGTNGDSKKMLRLLKAIYH---PR-NQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMG 139 (428)
Q Consensus 64 ~kiAYLIl~~h~d~~~l~RLL~aLy~---P~-n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg 139 (428)
|++..+|-+ ++..+.+.++|+.+.. |. +.=+|-||..+++...+.++++.. ....+|.++... ...|
T Consensus 1 p~vsIiIp~-~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~-----~~~~~i~~~~~~---~~~G 71 (241)
T cd06427 1 PVYTILVPL-YKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL-----PSIFRVVVVPPS---QPRT 71 (241)
T ss_pred CeEEEEEec-CCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc-----CCCeeEEEecCC---CCCc
Confidence 467888887 8888999999999953 32 233566777676654444332110 011234343321 2233
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 140 VSALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 140 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
.+ .|.-.+++ .. .-||++.+.+.|.+-
T Consensus 72 ~~--~a~n~g~~----~a-~gd~i~~~DaD~~~~ 98 (241)
T cd06427 72 KP--KACNYALA----FA-RGEYVVIYDAEDAPD 98 (241)
T ss_pred hH--HHHHHHHH----hc-CCCEEEEEcCCCCCC
Confidence 33 23223333 22 348999999998855
No 37
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=59.71 E-value=66 Score=36.58 Aligned_cols=104 Identities=12% Similarity=0.015 Sum_probs=59.0
Q ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHH----HcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceee
Q 014248 61 DYPPVLAYWICGTNGDSKKMLRLLKA----IYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAID 136 (428)
Q Consensus 61 ~~p~kiAYLIl~~h~d~~~l~RLL~a----Ly~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~ 136 (428)
+.+++++.+|=+ |++...+.++++. ++.|+-.+++=+|. .++.....+++ +...+|+++++.....
T Consensus 60 ~~~~~vsIlVPa-~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~-nD~~T~~~~~~------l~~~~p~~~~v~~~~~-- 129 (727)
T PRK11234 60 PDEKPLAIMVPA-WNETGVIGNMAELAATTLDYENYHIFVGTYP-NDPATQADVDA------VCARFPNVHKVVCARP-- 129 (727)
T ss_pred CCCCCEEEEEec-CcchhhHHHHHHHHHHhCCCCCeEEEEEecC-CChhHHHHHHH------HHHHCCCcEEEEeCCC--
Confidence 344668999988 8887766666664 56787555555552 22222233332 3345788875532221
Q ss_pred ecCccHHHHHHHHHHHHHhc----CCCCcEEEecCCCcccccC
Q 014248 137 KMGVSALAATLHAAALLLKI----STNWDWFIPLSPLDYPLMS 175 (428)
Q Consensus 137 wgg~S~V~AtL~~~~~lL~~----~~~wdyfi~LSgsDyPLkt 175 (428)
|.-+-..|.-.+++.+.+. +.+++.++.+-+.|.|=..
T Consensus 130 -g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd 171 (727)
T PRK11234 130 -GPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPM 171 (727)
T ss_pred -CCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChh
Confidence 2224555555555554332 2367888888888876433
No 38
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=58.37 E-value=1.2e+02 Score=27.26 Aligned_cols=90 Identities=10% Similarity=0.128 Sum_probs=51.8
Q ss_pred EEEeeCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYHPR--NQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAAT 146 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~P~--n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~At 146 (428)
+|.+ ++..+.+.++|++|.... +.=+|=+|..+++...+.+.+.. ...++.++.... .-|....+
T Consensus 2 iI~~-~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~-------~~~~i~~~~~~~--n~g~~~~~--- 68 (202)
T cd04185 2 VVVT-YNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG-------DLDNIVYLRLPE--NLGGAGGF--- 68 (202)
T ss_pred EEEe-eCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc-------CCCceEEEECcc--ccchhhHH---
Confidence 3444 888899999999995321 22357778878766555444311 122355553221 22322222
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 147 LHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 147 L~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
-.++..++ ..+.||++.+.+.+.+-
T Consensus 69 n~~~~~a~--~~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 69 YEGVRRAY--ELGYDWIWLMDDDAIPD 93 (202)
T ss_pred HHHHHHHh--ccCCCEEEEeCCCCCcC
Confidence 23333343 24679999999988875
No 39
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=57.82 E-value=73 Score=29.32 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=58.0
Q ss_pred EEEeeCCCH-HHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHHH
Q 014248 69 WICGTNGDS-KKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATL 147 (428)
Q Consensus 69 LIl~~h~d~-~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~AtL 147 (428)
+|.. ++.. +.+.++|+.+... +.-+|=||..+++... ...+ . ..+++.++.... . .| ...|--
T Consensus 2 vI~~-yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~-~~~~-------~-~~~~i~~i~~~~--n-~G--~~~a~N 65 (237)
T cd02526 2 VVVT-YNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIE-LRLR-------L-NSEKIELIHLGE--N-LG--IAKALN 65 (237)
T ss_pred EEEE-ecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHH-HHhh-------c-cCCcEEEEECCC--c-ee--hHHhhh
Confidence 3444 5666 9999999999865 4556668886655432 2221 0 246787775332 2 22 333334
Q ss_pred HHHHHHHhcCCCCcEEEecCCCcccccChhHHHHH
Q 014248 148 HAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHA 182 (428)
Q Consensus 148 ~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~ 182 (428)
.+++.+.. .+.||+++|.+.+++ ..+.|.+.
T Consensus 66 ~g~~~a~~--~~~d~v~~lD~D~~~--~~~~l~~l 96 (237)
T cd02526 66 IGIKAALE--NGADYVLLFDQDSVP--PPDMVEKL 96 (237)
T ss_pred HHHHHHHh--CCCCEEEEECCCCCc--CHhHHHHH
Confidence 44554433 268999999999997 46666654
No 40
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=56.43 E-value=92 Score=26.03 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=51.3
Q ss_pred EEeeCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHHH
Q 014248 70 ICGTNGDSKKMLRLLKAIYHPR--NQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATL 147 (428)
Q Consensus 70 Il~~h~d~~~l~RLL~aLy~P~--n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~AtL 147 (428)
|.+ ++..+.+.++|+.|.... +.=+|=+|..+++.....+...... ...++.++... ...| ...|--
T Consensus 3 ip~-~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~~---~~~g--~~~~~n 71 (180)
T cd06423 3 VPA-YNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-----YIRRVLVVRDK---ENGG--KAGALN 71 (180)
T ss_pred ecc-cChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-----ccceEEEEEec---ccCC--chHHHH
Confidence 444 788899999999996431 3344556666665544444432110 01334443221 2223 333333
Q ss_pred HHHHHHHhcCCCCcEEEecCCCcccccChhHHHH
Q 014248 148 HAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLH 181 (428)
Q Consensus 148 ~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~ 181 (428)
.+++.+ .-+|++++.+.|++- .+.|..
T Consensus 72 ~~~~~~-----~~~~i~~~D~D~~~~--~~~l~~ 98 (180)
T cd06423 72 AGLRHA-----KGDIVVVLDADTILE--PDALKR 98 (180)
T ss_pred HHHHhc-----CCCEEEEECCCCCcC--hHHHHH
Confidence 334332 568999999999774 445543
No 41
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=50.99 E-value=1.3e+02 Score=24.31 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=51.1
Q ss_pred EEEeeCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYHPR--NQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAAT 146 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~P~--n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~At 146 (428)
+|.+ ++..+.+.++++++..-. +.-++-+|..++++....+....+ ...++..+ ...+..+...+-
T Consensus 2 ii~~-~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~g~~~~~ 69 (156)
T cd00761 2 IIPA-YNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAK------KDPRVIRV-----INEENQGLAAAR 69 (156)
T ss_pred EEee-cCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHh------cCCCeEEE-----EecCCCChHHHH
Confidence 4555 788899999999996443 444566887776665554443211 11122222 122333444444
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCcccccC
Q 014248 147 LHAAALLLKISTNWDWFIPLSPLDYPLMS 175 (428)
Q Consensus 147 L~~~~~lL~~~~~wdyfi~LSgsDyPLkt 175 (428)
..++..+ +.||++.+.+.+.+...
T Consensus 70 ~~~~~~~-----~~d~v~~~d~D~~~~~~ 93 (156)
T cd00761 70 NAGLKAA-----RGEYILFLDADDLLLPD 93 (156)
T ss_pred HHHHHHh-----cCCEEEEECCCCccCcc
Confidence 4444443 47899999888776443
No 42
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=50.71 E-value=1.4e+02 Score=29.71 Aligned_cols=98 Identities=7% Similarity=0.031 Sum_probs=49.0
Q ss_pred CCeEEEEEEeeCCCH--HHHHHHHHH-H--------cCCCCEEEEEEeC------CC-ChhHHHHHHHHhhhhhhhhccC
Q 014248 63 PPVLAYWICGTNGDS--KKMLRLLKA-I--------YHPRNQYLLQLDA------GA-PESERAELALKVQSEIVFKAFG 124 (428)
Q Consensus 63 p~kiAYLIl~~h~d~--~~l~RLL~a-L--------y~P~n~y~IHvD~------ks-~~~~~~~L~~~v~~~~~~~~~~ 124 (428)
.+.+|||+.|...+. ..+..++.+ + .||+ .++|--+. +. +.++-.+|..++...|. ....
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD-~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~-~g~~ 90 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPD-YHFIARETSATSNAKNISIEQIRKLQDFLSKTSA-ISGY 90 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCC-EEEEeccccccccCCcccHHHHHHHHHHHhhCcc-cCCc
Confidence 467899998722211 222222222 2 4777 33343332 11 34444555555443332 1233
Q ss_pred ceEEeCccceeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCC
Q 014248 125 NVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPL 169 (428)
Q Consensus 125 NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgs 169 (428)
.|.++. ..-.|-.+.-+++=-.|++.+..-+|++++.+
T Consensus 91 KViII~-------~ae~mt~~AANALLKtLEEPP~~t~fILit~~ 128 (263)
T PRK06581 91 KVAIIY-------SAELMNLNAANSCLKILEDAPKNSYIFLITSR 128 (263)
T ss_pred EEEEEe-------chHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 444443 33344444444444456677888889988876
No 43
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=46.94 E-value=1e+02 Score=31.09 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=12.8
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHH
Q 014248 64 PVLAYWICGTNGDSKKMLRLLKAI 87 (428)
Q Consensus 64 ~kiAYLIl~~h~d~~~l~RLL~aL 87 (428)
+.+|||+.|..|.......+.++|
T Consensus 23 l~hAyLf~G~~G~~~~A~~~A~~l 46 (290)
T PRK07276 23 LNHAYLFSGDFASFEMALFLAQSL 46 (290)
T ss_pred cceeeeeeCCccHHHHHHHHHHHH
Confidence 446888877544433333444444
No 44
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=46.15 E-value=1.2e+02 Score=27.61 Aligned_cols=94 Identities=11% Similarity=0.121 Sum_probs=53.9
Q ss_pred EEEeeCCCHHHHHHHHHHHcCC---CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYHP---RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAA 145 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~P---~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~A 145 (428)
+|.+ ++..+.+.++|+.|..- .+.=+|=||..+++.....++++. ...++|.++... .-+|.+ .|
T Consensus 2 iIp~-yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~------~~~~~i~~~~~~---~n~G~~--~a 69 (224)
T cd06442 2 IIPT-YNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELA------KEYPRVRLIVRP---GKRGLG--SA 69 (224)
T ss_pred eEec-cchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHH------HhCCceEEEecC---CCCChH--HH
Confidence 3444 78888899998888642 234467778777665444443322 235666666422 234443 33
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHH
Q 014248 146 TLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLH 181 (428)
Q Consensus 146 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~ 181 (428)
--.+++.+ . -||++.|.+.|.+- .+.|..
T Consensus 70 ~n~g~~~a----~-gd~i~~lD~D~~~~--~~~l~~ 98 (224)
T cd06442 70 YIEGFKAA----R-GDVIVVMDADLSHP--PEYIPE 98 (224)
T ss_pred HHHHHHHc----C-CCEEEEEECCCCCC--HHHHHH
Confidence 33444443 2 28999999888763 444433
No 45
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=44.80 E-value=5.1e+02 Score=29.29 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=60.4
Q ss_pred CCCCeEEEEEEeeCCC-HHHHHHHHHHH---cCCC-CEEEEEEeCCCChh--------------HHHHHHHHhhhhhhhh
Q 014248 61 DYPPVLAYWICGTNGD-SKKMLRLLKAI---YHPR-NQYLLQLDAGAPES--------------ERAELALKVQSEIVFK 121 (428)
Q Consensus 61 ~~p~kiAYLIl~~h~d-~~~l~RLL~aL---y~P~-n~y~IHvD~ks~~~--------------~~~~L~~~v~~~~~~~ 121 (428)
+..|+++.+|-+ |++ .+.++++++++ +.|. +.=++=+|..+++. .+.++++. .+
T Consensus 128 ~~~P~VsViIP~-yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l------~~ 200 (713)
T TIGR03030 128 EEWPTVDVFIPT-YNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEF------CR 200 (713)
T ss_pred ccCCeeEEEEcC-CCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHH------HH
Confidence 345689999988 665 45556677665 3453 44455567665432 12333332 22
Q ss_pred ccCceEEeCccceeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccCh-hHHHHHHccCCCCcceE
Q 014248 122 AFGNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQ-DDVLHAFTFLPRDLNFI 193 (428)
Q Consensus 122 ~~~NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~-ddi~~~f~~~~~~~nFI 193 (428)
..+|+++.... ..++-. .+ +..+++.. +-||++.+.+++.|-... .++...|.. +.+.-++
T Consensus 201 -~~~v~yi~r~~--n~~~KA--gn----LN~al~~a-~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 201 -KLGVNYITRPR--NVHAKA--GN----INNALKHT-DGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred -HcCcEEEECCC--CCCCCh--HH----HHHHHHhc-CCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 23677775332 223211 11 12233332 459999999999996442 344444533 2334444
No 46
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=44.34 E-value=5.2e+02 Score=29.30 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=64.3
Q ss_pred CCCCCCeEEEEEEeeCCCHH----HHHHHHHHHc---CCCCEEEEEEeCCCChhH----HHHHHHHhhhhhhhhccCceE
Q 014248 59 GVDYPPVLAYWICGTNGDSK----KMLRLLKAIY---HPRNQYLLQLDAGAPESE----RAELALKVQSEIVFKAFGNVD 127 (428)
Q Consensus 59 ~~~~p~kiAYLIl~~h~d~~----~l~RLL~aLy---~P~n~y~IHvD~ks~~~~----~~~L~~~v~~~~~~~~~~NV~ 127 (428)
+.+..+|++.+|-+++.+++ .++..++.+. ++++..++=+|..++++. .+++.+..+. ....++|+
T Consensus 119 ~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~---~~~~~~i~ 195 (691)
T PRK05454 119 PPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAE---LGGEGRIF 195 (691)
T ss_pred CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHh---cCCCCcEE
Confidence 44566799999999555654 4555565543 455666666776555442 1122221111 11235787
Q ss_pred EeCccceeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHccCCCCcceEe
Q 014248 128 VVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFTFLPRDLNFID 194 (428)
Q Consensus 128 vv~k~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~~~~~~~nFI~ 194 (428)
+...... .|... - +....+-+.+.++||++.|-++..|-.. ...+...|.. +.+.-.|+
T Consensus 196 yr~R~~n---~~~Ka-G---Nl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~-dP~vGlVQ 255 (691)
T PRK05454 196 YRRRRRN---VGRKA-G---NIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA-NPRAGLIQ 255 (691)
T ss_pred EEECCcC---CCccH-H---HHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh-CcCEEEEe
Confidence 7543322 22211 1 1111122234678999999998887643 3444444432 33344444
No 47
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=43.85 E-value=12 Score=30.13 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.0
Q ss_pred cCCCcccccChhHHHHHH
Q 014248 166 LSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 166 LSgsDyPLkt~ddi~~~f 183 (428)
+.|.||||+|+.||...|
T Consensus 11 ~~~a~FPI~s~~eL~~al 28 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPAL 28 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-
T ss_pred HhcCCCCCCCHHHHHHhC
Confidence 457899999999999876
No 48
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.45 E-value=1.8e+02 Score=26.23 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=51.6
Q ss_pred EEEEEeeCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHH
Q 014248 67 AYWICGTNGDSKKMLRLLKAIYHP--RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALA 144 (428)
Q Consensus 67 AYLIl~~h~d~~~l~RLL~aLy~P--~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~ 144 (428)
..+|.+ ++..+.+.++|++|..- .+.-+|=||..+.+.....++ ..+++++... .|.+.
T Consensus 2 svii~~-~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~-----------~~~~~~~~~~-----~g~~~-- 62 (221)
T cd02522 2 SIIIPT-LNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIAR-----------SAGVVVISSP-----KGRAR-- 62 (221)
T ss_pred EEEEEc-cCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHh-----------cCCeEEEeCC-----cCHHH--
Confidence 345555 88888898988888531 234567778877655433222 1566666422 23321
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHH
Q 014248 145 ATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLH 181 (428)
Q Consensus 145 AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~ 181 (428)
|--.++ +.. .-+|++.+.+.++| +.+.+..
T Consensus 63 a~n~g~----~~a-~~~~i~~~D~D~~~--~~~~l~~ 92 (221)
T cd02522 63 QMNAGA----AAA-RGDWLLFLHADTRL--PPDWDAA 92 (221)
T ss_pred HHHHHH----Hhc-cCCEEEEEcCCCCC--ChhHHHH
Confidence 211222 222 24899999999988 4555544
No 49
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=43.45 E-value=1.4e+02 Score=30.17 Aligned_cols=79 Identities=8% Similarity=-0.013 Sum_probs=42.6
Q ss_pred HHHHHHcCCCCEEEEEEeCCC---ChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHHHHHHHHHHhcCC
Q 014248 82 RLLKAIYHPRNQYLLQLDAGA---PESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKIST 158 (428)
Q Consensus 82 RLL~aLy~P~n~y~IHvD~ks---~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL~~~~ 158 (428)
+.+....|||-++ |--|.+. +.++-.++.+.+...|. ...-.|.++ |..-.|-...-+++--.|++.+
T Consensus 53 ~~~~~~~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~p~-e~~~kv~ii-------~~ad~mt~~AaNaLLK~LEEPp 123 (290)
T PRK05917 53 YKISQKIHPDIHE-FSPQGKGRLHSIETPRAIKKQIWIHPY-ESPYKIYII-------HEADRMTLDAISAFLKVLEDPP 123 (290)
T ss_pred HHHhcCCCCCEEE-EecCCCCCcCcHHHHHHHHHHHhhCcc-CCCceEEEE-------echhhcCHHHHHHHHHHhhcCC
Confidence 4444556888443 3334432 34454455554433332 122344444 4444455555555555667778
Q ss_pred CCcEEEecCCC
Q 014248 159 NWDWFIPLSPL 169 (428)
Q Consensus 159 ~wdyfi~LSgs 169 (428)
+.-+||+++.+
T Consensus 124 ~~~~fiL~~~~ 134 (290)
T PRK05917 124 QHGVIILTSAK 134 (290)
T ss_pred CCeEEEEEeCC
Confidence 88899998876
No 50
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=43.08 E-value=2.2e+02 Score=24.71 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=52.3
Q ss_pred EEEeeCCCHHHHHHHHHHHcC--CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYH--PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAAT 146 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~--P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~At 146 (428)
+|.+ ++..+.++++|++|.. ..+.=+|=+|..+++...+.+..+... ...+.+++.... .|+....+.
T Consensus 2 vip~-~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~ 71 (182)
T cd06420 2 IITT-YNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQ----FPIPIKHVWQED-----EGFRKAKIR 71 (182)
T ss_pred EEee-cCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhh----cCCceEEEEcCC-----cchhHHHHH
Confidence 4555 7888999999999953 122334456776766544444332111 012334443321 122333333
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHH
Q 014248 147 LHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 147 L~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f 183 (428)
-.+++.+ .-+|++.|.+.|.| +.+-|...+
T Consensus 72 n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~~~ 101 (182)
T cd06420 72 NKAIAAA-----KGDYLIFIDGDCIP--HPDFIADHI 101 (182)
T ss_pred HHHHHHh-----cCCEEEEEcCCccc--CHHHHHHHH
Confidence 3333332 35899999999988 444454433
No 51
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=41.74 E-value=3.8e+02 Score=26.96 Aligned_cols=106 Identities=10% Similarity=0.058 Sum_probs=59.9
Q ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHc-----CCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceee
Q 014248 62 YPPVLAYWICGTNGDSKKMLRLLKAIY-----HPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAID 136 (428)
Q Consensus 62 ~p~kiAYLIl~~h~d~~~l~RLL~aLy-----~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~ 136 (428)
+.+++..+|-+ +++.+.+.++++++. .+.+.=+|=||..|++...+.+++..+ ....+|.++..
T Consensus 4 ~~~~vSVVIP~-yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~-----~~~~~v~~i~~----- 72 (325)
T PRK10714 4 PIKKVSVVIPV-YNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQ-----APDSHIVAILL----- 72 (325)
T ss_pred CCCeEEEEEcc-cCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHh-----hcCCcEEEEEe-----
Confidence 34568888887 888887777777663 123344677888887765554443211 11245544321
Q ss_pred ecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHcc
Q 014248 137 KMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTF 185 (428)
Q Consensus 137 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~ 185 (428)
-.++..-.|...+++.+ .-||++.+.+++- .+.++|...+..
T Consensus 73 ~~n~G~~~A~~~G~~~A-----~gd~vv~~DaD~q--~~p~~i~~l~~~ 114 (325)
T PRK10714 73 NRNYGQHSAIMAGFSHV-----TGDLIITLDADLQ--NPPEEIPRLVAK 114 (325)
T ss_pred CCCCCHHHHHHHHHHhC-----CCCEEEEECCCCC--CCHHHHHHHHHH
Confidence 12333444544544443 3589998888775 255555554433
No 52
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=40.84 E-value=2.1e+02 Score=27.37 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=58.0
Q ss_pred EEEEEEeeCCC-HHHHHHHHHHHc--CCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccH
Q 014248 66 LAYWICGTNGD-SKKMLRLLKAIY--HPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSA 142 (428)
Q Consensus 66 iAYLIl~~h~d-~~~l~RLL~aLy--~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~ 142 (428)
.||+-+++..+ ...+.-++..|- +++..++|+++...+.+.++.|++.. ...-.|..+.........+-..
T Consensus 1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~~~~~~~~~~~~ 74 (240)
T cd02537 1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVG------WIVREVEPIDPPDSANLLKRPR 74 (240)
T ss_pred CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCCcchhhhccchH
Confidence 37877774322 345666666662 45567777888877887777776421 0111111222111110011112
Q ss_pred HHHHH-HHHHHHHhcCCCCcEEEecCCCcccccChhHHHH
Q 014248 143 LAATL-HAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLH 181 (428)
Q Consensus 143 V~AtL-~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~ 181 (428)
..++. ++.. .+. .++|.++.|.+.-+.+.+.++|.+
T Consensus 75 ~~~~~~kl~~--~~l-~~~drvlylD~D~~v~~~i~~Lf~ 111 (240)
T cd02537 75 FKDTYTKLRL--WNL-TEYDKVVFLDADTLVLRNIDELFD 111 (240)
T ss_pred HHHHhHHHHh--ccc-cccceEEEEeCCeeEccCHHHHhC
Confidence 22222 1111 111 479999999999999999999853
No 53
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=40.77 E-value=2.6e+02 Score=24.78 Aligned_cols=95 Identities=9% Similarity=0.016 Sum_probs=53.1
Q ss_pred EEEeeCCCHHHHHHHHHHHcC---C-CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYH---P-RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALA 144 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~---P-~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~ 144 (428)
+|-+ +++.+.+.++|+++.. | .+.-+|=||..+++...+.+++ ....|.+... ..++| .-.
T Consensus 2 vIp~-~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~---------~~~~~~~~~~---~~~~g--k~~ 66 (183)
T cd06438 2 LIPA-HNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA---------AGATVLERHD---PERRG--KGY 66 (183)
T ss_pred EEec-cchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH---------cCCeEEEeCC---CCCCC--HHH
Confidence 4555 7888899999999843 3 2333555777676543332221 1122333221 23444 334
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHH
Q 014248 145 ATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVL 180 (428)
Q Consensus 145 AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~ 180 (428)
|.-.+++.+.+...+.||++.+-+.+.|- .+.|.
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~--p~~l~ 100 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVD--PNALE 100 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCC--hhHHH
Confidence 44455665543345689999999988874 44443
No 54
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=39.74 E-value=2.5e+02 Score=31.99 Aligned_cols=115 Identities=8% Similarity=0.059 Sum_probs=63.8
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHHH----HcCCCCEEEEEE--eCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceee
Q 014248 63 PPVLAYWICGTNGDSKKMLRLLKA----IYHPRNQYLLQL--DAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAID 136 (428)
Q Consensus 63 p~kiAYLIl~~h~d~~~l~RLL~a----Ly~P~n~y~IHv--D~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~ 136 (428)
.++++.+|=+ |++.+.+.+++++ |+.|+ |.|.| +..-. +..+++++ +...+|++++|..+.
T Consensus 70 ~~~vsIlVPa-~nE~~VI~~~v~~ll~~ldYp~--~~I~v~~~~nD~-~T~~~~~~------~~~~~p~~~~v~~~~--- 136 (703)
T PRK15489 70 EQPLAIMVPA-WKEYDVIAKMIENMLATLDYRR--YVIFVGTYPNDA-ETITEVER------MRRRYKRLVRVEVPH--- 136 (703)
T ss_pred CCceEEEEeC-CCcHHHHHHHHHHHHhcCCCCC--eEEEEEecCCCc-cHHHHHHH------HhccCCcEEEEEcCC---
Confidence 3468999988 8998888888876 35675 44555 11111 22223332 234468888875332
Q ss_pred ecC-ccHHHHHHHHHHHHHh----cCCCCcEEEecCCCcccccChhHHHHHHccCCCCcceEe
Q 014248 137 KMG-VSALAATLHAAALLLK----ISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFID 194 (428)
Q Consensus 137 wgg-~S~V~AtL~~~~~lL~----~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~~~~~~nFI~ 194 (428)
+| -+--.|.-.+++.+++ .+..++.++..-+.|.|=-.+-...+++. .+..++.
T Consensus 137 -~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~~---~~~~~iQ 195 (703)
T PRK15489 137 -DGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYLL---PRKDLVQ 195 (703)
T ss_pred -CCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhhc---CCcceee
Confidence 33 2333333343443322 13457779999999988555444333332 2335665
No 55
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=38.70 E-value=1.6e+02 Score=26.66 Aligned_cols=93 Identities=10% Similarity=0.055 Sum_probs=51.4
Q ss_pred EEeeCCCHHHHHHHHHHHcC------CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCc-eEEeCccceeeecCccH
Q 014248 70 ICGTNGDSKKMLRLLKAIYH------PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGN-VDVVGASYAIDKMGVSA 142 (428)
Q Consensus 70 Il~~h~d~~~l~RLL~aLy~------P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~N-V~vv~k~~~V~wgg~S~ 142 (428)
|.+ ++..+.+.++|+.+.. +.+.=+|-||..+++.....++.+.+ ..++ |+++... ...|.+
T Consensus 3 ip~-yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~------~~~~~i~~i~~~---~n~G~~- 71 (211)
T cd04188 3 IPA-YNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR------KNPALIRVLTLP---KNRGKG- 71 (211)
T ss_pred Ecc-cChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH------hCCCcEEEEEcc---cCCCcH-
Confidence 444 6766666666666532 13445677898887765555544322 2343 3565422 223443
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHH
Q 014248 143 LAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLH 181 (428)
Q Consensus 143 V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~ 181 (428)
.|...+++.+ .-||++.|.+.+.+- .+.|..
T Consensus 72 -~a~~~g~~~a-----~gd~i~~ld~D~~~~--~~~l~~ 102 (211)
T cd04188 72 -GAVRAGMLAA-----RGDYILFADADLATP--FEELEK 102 (211)
T ss_pred -HHHHHHHHHh-----cCCEEEEEeCCCCCC--HHHHHH
Confidence 3444555544 128999999888743 444433
No 56
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.00 E-value=2.8e+02 Score=24.10 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=50.7
Q ss_pred EEEeeCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYHP--RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAAT 146 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~P--~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~At 146 (428)
+|.+ ++..+.++++|.+|... .+.=+|=||..+++.....+.++. . ..+.+... ..+| ...|.
T Consensus 3 vi~~-~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~------~--~~~~~~~~----~~~g--~~~a~ 67 (202)
T cd06433 3 ITPT-YNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYE------D--KITYWISE----PDKG--IYDAM 67 (202)
T ss_pred EEec-cchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhH------h--hcEEEEec----CCcC--HHHHH
Confidence 4444 88889999999998532 123356678877766555444321 1 12334322 2333 33444
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCcccccC
Q 014248 147 LHAAALLLKISTNWDWFIPLSPLDYPLMS 175 (428)
Q Consensus 147 L~~~~~lL~~~~~wdyfi~LSgsDyPLkt 175 (428)
-.+++.+ .-||++.|.+.|.+...
T Consensus 68 n~~~~~a-----~~~~v~~ld~D~~~~~~ 91 (202)
T cd06433 68 NKGIALA-----TGDIIGFLNSDDTLLPG 91 (202)
T ss_pred HHHHHHc-----CCCEEEEeCCCcccCch
Confidence 4444432 35899999999988753
No 57
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.28 E-value=22 Score=28.72 Aligned_cols=17 Identities=18% Similarity=0.561 Sum_probs=15.0
Q ss_pred CCCcccccChhHHHHHH
Q 014248 167 SPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 167 SgsDyPLkt~ddi~~~f 183 (428)
-|.||||+++.+|...|
T Consensus 17 k~a~fPInn~~eL~~AL 33 (80)
T COG4746 17 KGADFPINNPEELVAAL 33 (80)
T ss_pred ccCCCCCCCHHHHHHhc
Confidence 46899999999999876
No 58
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=34.29 E-value=1.1e+02 Score=31.30 Aligned_cols=82 Identities=18% Similarity=0.114 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCCEEEEEEeCCC-ChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHHHHHHHHHHhcCC
Q 014248 80 MLRLLKAIYHPRNQYLLQLDAGA-PESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKIST 158 (428)
Q Consensus 80 l~RLL~aLy~P~n~y~IHvD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL~~~~ 158 (428)
-.|++.+-.||+-.++-..|.+. +.++-.++.+.+...|.. ..-.|.++...+ .|-.+.-+++--.|++.+
T Consensus 64 sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~-g~~KV~iI~~a~-------~m~~~AaNaLLKtLEEPp 135 (325)
T PRK06871 64 SCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQ-GGNKVVYIQGAE-------RLTEAAANALLKTLEEPR 135 (325)
T ss_pred HHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcccc-CCceEEEEechh-------hhCHHHHHHHHHHhcCCC
Confidence 34556666788854443334432 455555555554433322 223555555443 455555555555667788
Q ss_pred CCcEEEecCCC
Q 014248 159 NWDWFIPLSPL 169 (428)
Q Consensus 159 ~wdyfi~LSgs 169 (428)
+.-+||+++.+
T Consensus 136 ~~~~fiL~t~~ 146 (325)
T PRK06871 136 PNTYFLLQADL 146 (325)
T ss_pred CCeEEEEEECC
Confidence 88899998865
No 59
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=31.06 E-value=3.7e+02 Score=25.39 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEeCCC-ChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecC------ccHHHHHHHH
Q 014248 77 SKKMLRLLKAIYHPRNQYLLQLDAGA-PESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMG------VSALAATLHA 149 (428)
Q Consensus 77 ~~~l~RLL~aLy~P~n~y~IHvD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg------~S~V~AtL~~ 149 (428)
...+-.-++|+-+.....+|+.=+.. ...|...+. ..+||.+..-.....|.. ....+..+.-
T Consensus 37 t~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~----------~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~ 106 (191)
T PRK05986 37 TAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE----------FGGGVEFHVMGTGFTWETQDRERDIAAAREGWEE 106 (191)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh----------cCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHH
Confidence 35777788899899999999999876 445655543 246788774333333432 1222333444
Q ss_pred HHHHHhcCCCCcEEEe---cCCCcccccChhHHHHHHccCCCCcceE
Q 014248 150 AALLLKISTNWDWFIP---LSPLDYPLMSQDDVLHAFTFLPRDLNFI 193 (428)
Q Consensus 150 ~~~lL~~~~~wdyfi~---LSgsDyPLkt~ddi~~~f~~~~~~~nFI 193 (428)
++.++. ..+||-+|+ +-+-+|=|.+.+++++.+...|.+.+-|
T Consensus 107 a~~~l~-~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV 152 (191)
T PRK05986 107 AKRMLA-DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV 152 (191)
T ss_pred HHHHHh-CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE
Confidence 444444 468999986 6777888999999999998777766655
No 60
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=27.92 E-value=2.6e+02 Score=27.53 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=55.1
Q ss_pred EEEEeeCCCHHHHHHHHHHHcCCCCEE---EEEEe-CCCChhHHHHHHHHhhhhhhhhccCceEEeC-------ccce--
Q 014248 68 YWICGTNGDSKKMLRLLKAIYHPRNQY---LLQLD-AGAPESERAELALKVQSEIVFKAFGNVDVVG-------ASYA-- 134 (428)
Q Consensus 68 YLIl~~h~d~~~l~RLL~aLy~P~n~y---~IHvD-~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~-------k~~~-- 134 (428)
.+|+++.+...+..++|+.|.+-+|.. ++|-. .+-+.+.+++|.. ..+|.++. +...
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~----------~q~v~~vd~~~~~~~~~~~~~ 73 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP----------DQDVWFVDASCVIDPDYLGKS 73 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh----------hhhhheecceEEeeccccccc
Confidence 466664556677778888887766633 34442 3345555655543 23333332 1111
Q ss_pred eeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHH
Q 014248 135 IDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVL 180 (428)
Q Consensus 135 V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~ 180 (428)
+...||. +..++.+. ..++-+|+|-+..+|+++.+.+-
T Consensus 74 ~~~~~~~-----~K~lA~l~---ssFeevllLDaD~vpl~~p~~lF 111 (271)
T PF11051_consen 74 FSKKGFQ-----NKWLALLF---SSFEEVLLLDADNVPLVDPEKLF 111 (271)
T ss_pred cccCCch-----hhhhhhhh---CCcceEEEEcCCcccccCHHHHh
Confidence 1111333 34444443 36888999999999999998873
No 61
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=27.63 E-value=1.7e+02 Score=29.13 Aligned_cols=82 Identities=5% Similarity=-0.136 Sum_probs=40.2
Q ss_pred HHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHHHHHHHHHHhcCCCC
Q 014248 81 LRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNW 160 (428)
Q Consensus 81 ~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL~~~~~w 160 (428)
.+++.+..|||-+++.-....-..++-.++.+.+...+.....-.|.++ |..-.|-.+.-+++=-.|++.++.
T Consensus 46 C~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~~~KV~II-------~~ae~m~~~AaNaLLK~LEEPp~~ 118 (261)
T PRK05818 46 CLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNGKKIYII-------YGIEKLNKQSANSLLKLIEEPPKN 118 (261)
T ss_pred HHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcCCCEEEEe-------ccHhhhCHHHHHHHHHhhcCCCCC
Confidence 3556666788854432111111333434444333211111112244444 444445555555554566777788
Q ss_pred cEEEecCCC
Q 014248 161 DWFIPLSPL 169 (428)
Q Consensus 161 dyfi~LSgs 169 (428)
-+||+++.+
T Consensus 119 t~fiLit~~ 127 (261)
T PRK05818 119 TYGIFTTRN 127 (261)
T ss_pred eEEEEEECC
Confidence 888888865
No 62
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=27.37 E-value=4.7e+02 Score=26.15 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=58.4
Q ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHcC----CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeee
Q 014248 62 YPPVLAYWICGTNGDSKKMLRLLKAIYH----PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDK 137 (428)
Q Consensus 62 ~p~kiAYLIl~~h~d~~~l~RLL~aLy~----P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~w 137 (428)
..+++..+|-+ ++..+.+.++|+++.. +...=+|-||..|++...+.++++. ........++.. ...-
T Consensus 29 ~~~~vSVVIPa-yNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~-----~~v~~~~~~~~~--~~~n 100 (306)
T PRK13915 29 AGRTVSVVLPA-LNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAG-----ARVVSREEILPE--LPPR 100 (306)
T ss_pred CCCCEEEEEec-CCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhc-----chhhcchhhhhc--cccC
Confidence 45788999988 8888999998888852 2223345699888776544333210 000111111110 0112
Q ss_pred cCccHHHHHHHHHHHHHhcCCCCcEEEecCCCccccc--ChhHHHHHHc
Q 014248 138 MGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLM--SQDDVLHAFT 184 (428)
Q Consensus 138 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLk--t~ddi~~~f~ 184 (428)
.|.+ .|...+++. .+-||++.+.+.+.++. -...+...+.
T Consensus 101 ~Gkg--~A~~~g~~~-----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~ 142 (306)
T PRK13915 101 PGKG--EALWRSLAA-----TTGDIVVFVDADLINFDPMFVPGLLGPLL 142 (306)
T ss_pred CCHH--HHHHHHHHh-----cCCCEEEEEeCccccCCHHHHHHHHHHHH
Confidence 3332 333334332 23589999999986443 3455655553
No 63
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=27.22 E-value=3.4e+02 Score=27.39 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=22.3
Q ss_pred CceEEeCccceeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCC
Q 014248 124 GNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSP 168 (428)
Q Consensus 124 ~NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 168 (428)
..|.|+.... .|-....+++-..|++.++.-+||+++.
T Consensus 111 ~kvviI~~a~-------~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 111 KKVYIIEHAD-------KMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ceEEEeehHh-------hhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 4566665432 2333344444445666677788888776
No 64
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=26.92 E-value=4.7e+02 Score=23.49 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=52.8
Q ss_pred EEEeeCCCHHHHHHHHHHHcCC-CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHHH
Q 014248 69 WICGTNGDSKKMLRLLKAIYHP-RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATL 147 (428)
Q Consensus 69 LIl~~h~d~~~l~RLL~aLy~P-~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~AtL 147 (428)
+|-+ ++..+.+.++|++|..- .+.-+|=||..+++.....++ . ....++|+++.......-+|. -.|.-
T Consensus 2 iIp~-~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~--~-----~~~~~~v~~i~~~~~~~~~Gk--~~aln 71 (191)
T cd06436 2 LVPC-LNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR--L-----AITDSRVHLLRRHLPNARTGK--GDALN 71 (191)
T ss_pred EEec-cccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh--h-----eecCCcEEEEeccCCcCCCCH--HHHHH
Confidence 3444 88889999999999642 234466778777665444332 1 112468888753222122332 23333
Q ss_pred HHHHHHHhc----C--CCCcEEEecCCCccccc
Q 014248 148 HAAALLLKI----S--TNWDWFIPLSPLDYPLM 174 (428)
Q Consensus 148 ~~~~~lL~~----~--~~wdyfi~LSgsDyPLk 174 (428)
.+++.+... + .+-||++.+-+.+.+-.
T Consensus 72 ~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~ 104 (191)
T cd06436 72 AAYDQIRQILIEEGADPERVIIAVIDADGRLDP 104 (191)
T ss_pred HHHHHHhhhccccccCCCccEEEEECCCCCcCH
Confidence 344443321 1 12368888888777543
No 65
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=26.51 E-value=5.5e+02 Score=26.41 Aligned_cols=97 Identities=9% Similarity=0.000 Sum_probs=54.9
Q ss_pred EEEEEeeCCCHHHHHHHHHHHcCC-----CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccce--eeec-
Q 014248 67 AYWICGTNGDSKKMLRLLKAIYHP-----RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYA--IDKM- 138 (428)
Q Consensus 67 AYLIl~~h~d~~~l~RLL~aLy~P-----~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~--V~wg- 138 (428)
+.+|++ .+.++.++|.|++|..- ....+|-.|.... +..+.++.+. .+|.++..... ...+
T Consensus 3 PVlv~a-yNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~-~~~~~v~~~~---------~~i~~i~~~~~~~~~~~~ 71 (334)
T cd02514 3 PVLVIA-CNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE-EVADVAKSFG---------DGVTHIQHPPISIKNVNP 71 (334)
T ss_pred CEEEEe-cCCHHHHHHHHHHHHhccccCCCceEEEEeCCCch-HHHHHHHhhc---------cccEEEEcccccccccCc
Confidence 567777 78899999999999642 2345666776432 2222222210 23444432111 1111
Q ss_pred -----C-ccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC
Q 014248 139 -----G-VSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS 175 (428)
Q Consensus 139 -----g-~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt 175 (428)
+ +.+...-..++..++... +.+++|.|-+.+.|-..
T Consensus 72 ~~~~~~y~~ia~hyk~aln~vF~~~-~~~~vIILEDDl~~sPd 113 (334)
T cd02514 72 PHKFQGYYRIARHYKWALTQTFNLF-GYSFVIILEDDLDIAPD 113 (334)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhc-CCCEEEEECCCCccCHh
Confidence 2 233333334566666543 68999999999887654
No 66
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=26.35 E-value=57 Score=31.20 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=44.5
Q ss_pred CCCCchhhhHHhhcCCCCCCccccCceeEEecCC-----CCCCCCcccChhhHHHHHhCCCcceEEeccCCCHHHHHHHH
Q 014248 275 PYPLESYFHTIICNSPQFQNSTINTDLSFMKWES-----PAHVGPRTLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKID 349 (428)
Q Consensus 275 ~~pdE~yFqTvl~Ns~~f~~t~vn~nLRyi~W~~-----~~~~~P~~l~~~D~~~l~~S~~~alFARKF~~d~~vLd~Id 349 (428)
.+-||-=+.++.+-+ -.+...-.=..|+++=.+ +++.||+-|+.++|+.|...++|.+|| |..-.. .|.
T Consensus 41 ~aGd~pT~E~lAA~~-lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa--fHGYp~---~i~ 114 (203)
T PF09363_consen 41 CAGDVPTLEVLAAAS-LLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA--FHGYPW---LIH 114 (203)
T ss_dssp EESHHHHHHHHHHHH-HHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE--ESSEHH---HHH
T ss_pred ecCchhhHHHHHHHH-HHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE--cCCCHH---HHH
Confidence 455555555554332 111111122456665432 356899999999999999999888998 554343 355
Q ss_pred HHHhccCC-CCC-CCCe
Q 014248 350 DRVLNRSG-NGV-VPGN 364 (428)
Q Consensus 350 ~~ll~r~~-~~~-~~g~ 364 (428)
+.+.+|.. +.+ +.|+
T Consensus 115 ~L~~~R~n~~~~hV~GY 131 (203)
T PF09363_consen 115 RLLFGRPNHDRFHVHGY 131 (203)
T ss_dssp HHTTTSTTGGGEEEEEE
T ss_pred HHhcCCCCCCCeEEEee
Confidence 66777775 334 4443
No 67
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.94 E-value=2.3e+02 Score=24.14 Aligned_cols=61 Identities=23% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHH
Q 014248 77 SKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAAT 146 (428)
Q Consensus 77 ~~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~At 146 (428)
-..+++||.. ..-+..++-+|......+ |.+++....-.+.+|||+|=++ .+||.+-+.+.
T Consensus 27 c~~~k~ll~~--~~v~~~vvELD~~~~g~e---iq~~l~~~tg~~tvP~vFI~Gk----~iGG~~dl~~l 87 (104)
T KOG1752|consen 27 CHRAKELLSD--LGVNPKVVELDEDEDGSE---IQKALKKLTGQRTVPNVFIGGK----FIGGASDLMAL 87 (104)
T ss_pred HHHHHHHHHh--CCCCCEEEEccCCCCcHH---HHHHHHHhcCCCCCCEEEECCE----EEcCHHHHHHH
Confidence 3567888887 345788899999865443 3333322122235799998664 56999988653
No 68
>PRK08309 short chain dehydrogenase; Provisional
Probab=25.06 E-value=5.4e+02 Score=23.58 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHHHHHHHHHH
Q 014248 75 GDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLL 154 (428)
Q Consensus 75 ~d~~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL 154 (428)
++.+....+...+..+.+..++.+|-....+..+.+...+ ..++.+.++ |.|-....-++...+++.+=
T Consensus 31 R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l------~~~g~id~l-----v~~vh~~~~~~~~~~~~~~g 99 (177)
T PRK08309 31 RREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTI------EKNGPFDLA-----VAWIHSSAKDALSVVCRELD 99 (177)
T ss_pred CCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHH------HHcCCCeEE-----EEeccccchhhHHHHHHHHc
Confidence 5567777776666555667777888866555444444322 223444332 35555555555555555554
Q ss_pred hcCCCCcEEEecCCC
Q 014248 155 KISTNWDWFIPLSPL 169 (428)
Q Consensus 155 ~~~~~wdyfi~LSgs 169 (428)
-.++.|.++|.|...
T Consensus 100 v~~~~~~~~h~~gs~ 114 (177)
T PRK08309 100 GSSETYRLFHVLGSA 114 (177)
T ss_pred cCCCCceEEEEeCCc
Confidence 345788899888443
No 69
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=24.76 E-value=4.1e+02 Score=26.37 Aligned_cols=97 Identities=12% Similarity=-0.040 Sum_probs=50.9
Q ss_pred CeEEEEEEeeCCC--HHHHHHHHHHH-------cCCCCEEEEEEeCCC-ChhHHHHHHHHhhhhhhhhccCceEEeCccc
Q 014248 64 PVLAYWICGTNGD--SKKMLRLLKAI-------YHPRNQYLLQLDAGA-PESERAELALKVQSEIVFKAFGNVDVVGASY 133 (428)
Q Consensus 64 ~kiAYLIl~~h~d--~~~l~RLL~aL-------y~P~n~y~IHvD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~ 133 (428)
..+|||+.|..|- ......+.++| .||+-..+...|.+. +.++-.++...+...|.. .-..|.|+...+
T Consensus 25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~-~~~kv~iI~~ad 103 (313)
T PRK05564 25 FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYE-GDKKVIIIYNSE 103 (313)
T ss_pred CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCccc-CCceEEEEechh
Confidence 4469999884443 23555555555 355544444445443 333333444433333432 234576766432
Q ss_pred eeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCC
Q 014248 134 AIDKMGVSALAATLHAAALLLKISTNWDWFIPLSP 168 (428)
Q Consensus 134 ~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 168 (428)
.|-.+..+++-..|+..++..+||+++.
T Consensus 104 -------~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 104 -------KMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred -------hcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 2333334444445666677789998884
No 70
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=24.57 E-value=5.4e+02 Score=23.47 Aligned_cols=101 Identities=6% Similarity=-0.075 Sum_probs=53.4
Q ss_pred EEEeeCCCH-HHHHHHHHHHcCCC--CEEEEEEeCCCChhHH-HHHHHHhhhhhhhhccCceEEeCccceeeecCccHHH
Q 014248 69 WICGTNGDS-KKMLRLLKAIYHPR--NQYLLQLDAGAPESER-AELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALA 144 (428)
Q Consensus 69 LIl~~h~d~-~~l~RLL~aLy~P~--n~y~IHvD~ks~~~~~-~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~ 144 (428)
+|-+ ++.. +.+.++|+.|..-. +.=+|=||..+++... ..+++..+. ...++.++.... ..|+ ...
T Consensus 3 iip~-~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-----~~~~i~~i~~~~--~~G~--~~~ 72 (236)
T cd06435 3 HVPC-YEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-----LGERFRFFHVEP--LPGA--KAG 72 (236)
T ss_pred eEee-CCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-----hCCcEEEEEcCC--CCCC--chH
Confidence 4444 7764 78999988885321 2335666776655432 333332211 124666664221 2343 122
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHc
Q 014248 145 ATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFT 184 (428)
Q Consensus 145 AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~ 184 (428)
|.-.+++.+ . .+.||++.|-..+. .+.+.|.+...
T Consensus 73 a~n~g~~~a-~--~~~d~i~~lD~D~~--~~~~~l~~l~~ 107 (236)
T cd06435 73 ALNYALERT-A--PDAEIIAVIDADYQ--VEPDWLKRLVP 107 (236)
T ss_pred HHHHHHHhc-C--CCCCEEEEEcCCCC--cCHHHHHHHHH
Confidence 333333332 1 34799999988875 46666665443
No 71
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=23.62 E-value=4.7e+02 Score=24.23 Aligned_cols=107 Identities=21% Similarity=0.198 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEeCC-CChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCcc-H--HHHHHHHHHH
Q 014248 77 SKKMLRLLKAIYHPRNQYLLQLDAG-APESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVS-A--LAATLHAAAL 152 (428)
Q Consensus 77 ~~~l~RLL~aLy~P~n~y~IHvD~k-s~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S-~--V~AtL~~~~~ 152 (428)
...+=-.++|+=|....+++..=|. ....|...+ ...+||.+..-.....|..-. . .++..++++.
T Consensus 18 TAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l----------~~l~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~ 87 (172)
T PF02572_consen 18 TAALGLALRAAGHGMRVLIVQFLKGGRYSGELKAL----------KKLPNVEIERFGKGFVWRMNEEEEDRAAAREGLEE 87 (172)
T ss_dssp HHHHHHHHHHHCTT--EEEEESS--SS--HHHHHH----------GGGT--EEEE--TT----GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHH----------HhCCeEEEEEcCCcccccCCCcHHHHHHHHHHHHH
Confidence 3677788899999999999999887 334444433 346778776533344554432 2 2333333333
Q ss_pred HHhc--CCCCcEEEe---cCCCcccccChhHHHHHHccCCCCcceE
Q 014248 153 LLKI--STNWDWFIP---LSPLDYPLMSQDDVLHAFTFLPRDLNFI 193 (428)
Q Consensus 153 lL~~--~~~wdyfi~---LSgsDyPLkt~ddi~~~f~~~~~~~nFI 193 (428)
+.+. ...||.+|+ +-+-+|=|.+.+++.+.+...|...+-|
T Consensus 88 a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV 133 (172)
T PF02572_consen 88 AKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV 133 (172)
T ss_dssp HHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE
T ss_pred HHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE
Confidence 3322 468999997 6667788899999999888777766655
No 72
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.51 E-value=57 Score=26.36 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=25.4
Q ss_pred eeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHc
Q 014248 134 AIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFT 184 (428)
Q Consensus 134 ~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~ 184 (428)
.+.-||-+.-++++. -+|+..|||.++.+++...+-
T Consensus 40 tc~~G~~e~tA~E~~---------------kLlT~~DFPfk~a~~vad~iv 75 (80)
T COG4746 40 TCESGGVEVTAAEAG---------------KLLTDADFPFKSAEQVADTIV 75 (80)
T ss_pred CccCCCeeeeHHHHH---------------hhccccCCCCCCHHHHHHHHH
Confidence 356666666555543 246779999999999987653
Done!