Query 014248
Match_columns 428
No_of_seqs 228 out of 846
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 5.9E-64 2E-68 514.0 26.0 279 62-359 82-388 (391)
2 3bcv_A Putative glycosyltransf 84.7 6 0.0002 35.3 10.3 93 63-173 4-98 (240)
3 1qg8_A Protein (spore coat pol 77.1 12 0.00039 33.7 9.4 108 64-184 1-114 (255)
4 4fix_A UDP-galactofuranosyl tr 74.4 15 0.00051 39.4 10.8 111 61-184 177-294 (657)
5 2z86_A Chondroitin synthase; G 69.9 34 0.0012 35.5 12.1 93 64-173 93-188 (625)
6 2d7i_A Polypeptide N-acetylgal 67.9 17 0.00058 37.9 9.2 107 62-185 110-223 (570)
7 1xhb_A Polypeptide N-acetylgal 65.7 25 0.00086 35.2 9.7 106 62-184 27-140 (472)
8 2z86_A Chondroitin synthase; G 64.9 40 0.0014 35.1 11.4 93 63-173 374-468 (625)
9 1ezi_A CMP-N-acetylneuraminic 62.3 38 0.0013 30.1 9.4 90 78-185 30-121 (228)
10 2ffu_A Ppgalnact-2, polypeptid 57.4 44 0.0015 33.8 9.9 92 62-173 64-160 (501)
11 4hg6_A Cellulose synthase subu 52.0 1.2E+02 0.0041 33.0 12.8 96 61-173 137-252 (802)
12 3ckj_A Putative uncharacterize 38.7 1.4E+02 0.0047 28.3 9.6 116 62-193 46-166 (329)
13 1qwj_A Cytidine monophospho-N- 34.4 1.3E+02 0.0046 26.6 8.3 25 159-184 94-118 (229)
14 2fy7_A Beta-1,4-galactosyltran 33.8 2.1E+02 0.0072 26.9 9.9 78 63-176 64-146 (287)
15 1jsd_A Haemagglutinin (HA1 cha 24.6 30 0.001 33.8 2.0 43 158-201 74-122 (319)
16 3f1y_A Mannosyl-3-phosphoglyce 23.4 1.6E+02 0.0055 29.1 7.2 112 63-194 93-215 (387)
17 3ku3_A Hemagglutinin HA1 chain 23.0 34 0.0012 33.5 2.0 44 157-201 75-124 (327)
18 1iio_A Conserved hypothetical 22.1 27 0.00091 27.6 0.9 17 167-183 21-37 (84)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=5.9e-64 Score=514.04 Aligned_cols=279 Identities=22% Similarity=0.322 Sum_probs=239.7
Q ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCcc
Q 014248 62 YPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVS 141 (428)
Q Consensus 62 ~p~kiAYLIl~~h~d~~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S 141 (428)
.+|+|||+|++ |+|+++++||++++|||+|.||||+|+|++...+.++.+ +..+++||+|++++..|.|||+|
T Consensus 82 ~~~kiAflil~-h~d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~------~~~~f~NV~v~~~~~~v~WGg~S 154 (391)
T 2gak_A 82 VGFPIAYSIVV-HHKIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQG------IASCFDNVFVASQLESVVYASWT 154 (391)
T ss_dssp HTSCEEEEEEE-CSCHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHH------HHHTCTTEEECSSCCCCCTTSHH
T ss_pred cCCCEEEEEEe-cCCHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHH------HHhcCCCEEEeccCcccccCCch
Confidence 45889999999 899999999999999999999999999999887766643 35679999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHccCCCCcceEeeecCCCcceee-eeeeEeeCCcccccc
Q 014248 142 ALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERL-MINRIVIDPNLYYKK 220 (428)
Q Consensus 142 ~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~~~~~~nFI~~~~~~~wk~~~-R~~~~~~dp~ly~~~ 220 (428)
||+|+|+||+.||+...+|||||||||+||||+|+++|.++|..+ +|+|||++..+.+|++.+ +.++...|++++
T Consensus 155 ~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~R~~~~~~~~~~~l~--- 230 (391)
T 2gak_A 155 RVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEERWKKRYAVVDGKLT--- 230 (391)
T ss_dssp HHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSHHHHEEEEEETTEEE---
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCcccccceEeeeecccccee---
Confidence 999999999999998789999999999999999999999999765 789999999888886532 223334454332
Q ss_pred CccceeecccCCCCCCceeeecceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCchhhhHHhhcC---------CC
Q 014248 221 ATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNS---------PQ 291 (428)
Q Consensus 221 k~~i~~~~~kR~~P~~~~l~~GS~W~~LsR~fveyii~~~d~lpr~ll~yf~~t~~pdE~yFqTvl~Ns---------~~ 291 (428)
++..++|.+|.++++|+|||||+|||+||+||++ |++++++++||+++++|||+||||++.|. ..
T Consensus 231 ----~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~~~~ 304 (391)
T 2gak_A 231 ----NTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNK 304 (391)
T ss_dssp ----EEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCSSGG
T ss_pred ----eecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCccccccc
Confidence 2346778889999999999999999999999998 66688899999999999999999998764 23
Q ss_pred CCCccccCceeEEecCCCCC------CCCc----------ccChhhHHHHHhCCCcceEEeccCC--CHHHHHHHHHHHh
Q 014248 292 FQNSTINTDLSFMKWESPAH------VGPR----------TLTLPDYVEMVTSNKTTIFARPFEE--DDPVLEKIDDRVL 353 (428)
Q Consensus 292 f~~t~vn~nLRyi~W~~~~~------~~P~----------~l~~~D~~~l~~S~~~alFARKF~~--d~~vLd~Id~~ll 353 (428)
|+++++++++|||+|+++.+ .||. +|+.+|+++|.+|+ ++|||||++ |++||+|||+.|.
T Consensus 305 ~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~--~lFARKF~~~~d~~~l~~l~~~l~ 382 (391)
T 2gak_A 305 YDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQH--HLFANKFDMDVDPFAIQCLDEHLR 382 (391)
T ss_dssp GCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSC--CSEEECCCTTTCHHHHHHHHHHHH
T ss_pred cccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCC--CceEEccCCccCHHHHHHHHHHHh
Confidence 45667899999999985322 2443 89999999999999 999999997 8999999999999
Q ss_pred ccCCCC
Q 014248 354 NRSGNG 359 (428)
Q Consensus 354 ~r~~~~ 359 (428)
+|+-.+
T Consensus 383 ~r~~~~ 388 (391)
T 2gak_A 383 RKALEN 388 (391)
T ss_dssp HHHHC-
T ss_pred hhhhcc
Confidence 887543
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=84.70 E-value=6 Score=35.25 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=61.2
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCc
Q 014248 63 PPVLAYWICGTNGDSKKMLRLLKAIYHP--RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGV 140 (428)
Q Consensus 63 p~kiAYLIl~~h~d~~~l~RLL~aLy~P--~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~ 140 (428)
.|++..+|.+ ++..+.+.++|+.|..- .+.=+|=||..+++...+.++++. ...++|.++.+. -.|.
T Consensus 4 ~p~vsViIp~-yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~------~~~~~i~~i~~~----n~G~ 72 (240)
T 3bcv_A 4 IPKVSVIVPI-YNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYA------AQYPNIKVIHKK----NAGL 72 (240)
T ss_dssp CCSEEEEEEE-SSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHH------HHCSSEEEEECC----CCCH
T ss_pred CCcEEEEEec-CCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHH------hhCCCEEEEECC----CCCh
Confidence 3678888887 78889999999999531 234466788878776555554422 346889998532 2343
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 141 SALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 141 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
..|--.+++.+ .=+|++.|.+.|++-
T Consensus 73 --~~a~N~g~~~a-----~g~~i~~lD~Dd~~~ 98 (240)
T 3bcv_A 73 --GMACNSGLDVA-----TGEYVAFCDSDDYVD 98 (240)
T ss_dssp --HHHHHHHHHHC-----CSSEEEECCTTCCCC
T ss_pred --HHHHHHHHHHc-----CCCEEEEECCCCcCC
Confidence 33333444432 238999999999864
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=77.08 E-value=12 Score=33.73 Aligned_cols=108 Identities=8% Similarity=0.020 Sum_probs=65.2
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCcccee---eec
Q 014248 64 PVLAYWICGTNGDSKKMLRLLKAIYHP--RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAI---DKM 138 (428)
Q Consensus 64 ~kiAYLIl~~h~d~~~l~RLL~aLy~P--~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V---~wg 138 (428)
|++..+|.+ ++..+.+.++|+.|..- .+.=+|=||..+++...+.++++ ...++|.++.....- .+.
T Consensus 1 p~vSViIp~-yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~-------~~~~~i~~i~~~~~~~~~~~~ 72 (255)
T 1qg8_A 1 PKVSVIMTS-YNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPF-------LNDNRVRFYQSDISGVKERTE 72 (255)
T ss_dssp CCEEEEEEE-SSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGG-------GGSTTEEEEECCCCSHHHHHS
T ss_pred CeEEEEEEc-CCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHH-------hhcCCEEEEeccccccccccc
Confidence 568888887 78889999999998531 13446778887877654444321 125788887543100 001
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHc
Q 014248 139 GVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFT 184 (428)
Q Consensus 139 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~ 184 (428)
..+...|--.+++.+ .-+|++.|.+.|++-.. .+.+...|.
T Consensus 73 n~G~~~a~N~gi~~a-----~g~~i~~lD~Dd~~~~~~l~~~~~~~~ 114 (255)
T 1qg8_A 73 KTRYAALINQAIEMA-----EGEYITYATDDNIYMPDRLLKMVRELD 114 (255)
T ss_dssp SCHHHHHHHHHHHHC-----CCSEEEEEETTEEECTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHc-----CCCEEEEeCCCCccChHHHHHHHHHHH
Confidence 233444444444433 34899999999997432 334444444
No 4
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=74.43 E-value=15 Score=39.37 Aligned_cols=111 Identities=8% Similarity=-0.056 Sum_probs=69.7
Q ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHcCC-----CCEEEEEEeCCCChh-HHHHHHHHhhhhhhhhccCceEEeCccce
Q 014248 61 DYPPVLAYWICGTNGDSKKMLRLLKAIYHP-----RNQYLLQLDAGAPES-ERAELALKVQSEIVFKAFGNVDVVGASYA 134 (428)
Q Consensus 61 ~~p~kiAYLIl~~h~d~~~l~RLL~aLy~P-----~n~y~IHvD~ks~~~-~~~~L~~~v~~~~~~~~~~NV~vv~k~~~ 134 (428)
+.+|+++.+|.. ++..+.+.++|++|..- .+.=+|=||..+++. ....+.+.++ ...++|.++...
T Consensus 177 ~~~pkVSVVIpt-YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~-----~~~~~I~vI~~~-- 248 (657)
T 4fix_A 177 PGTANIAVGIPT-FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAA-----RLGSRLSIHDQP-- 248 (657)
T ss_dssp CSCCCEEEECCB-SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHH-----HHGGGEEEEECC--
T ss_pred CCCCeEEEEEEe-cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHH-----hcCCCEEEEECC--
Confidence 446889999987 89999999999999642 233478899888642 1112221111 235789998654
Q ss_pred eeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHc
Q 014248 135 IDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFT 184 (428)
Q Consensus 135 V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~ 184 (428)
+-| + -.|--.+++.+.... +.||+++|...+.+-.. .+.+++.+.
T Consensus 249 -N~G-~--a~a~N~Gl~~A~g~~-~~dyIlfLD~D~~~~pd~L~~ll~~l~ 294 (657)
T 4fix_A 249 -NLG-G--SGGYSRVMYEALKNT-DCQQILFMDDDIRLEPDSILRVLAMHR 294 (657)
T ss_dssp -CCH-H--HHHHHHHHHHHHHHC-CCSEEEEECSSEEECTHHHHHHHHHHH
T ss_pred -CCC-H--HHHHHHHHHHHHhcC-CCCEEEEECCCCccChhHHHHHHHHHH
Confidence 222 2 234556677776642 68999999988887522 234444443
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=69.93 E-value=34 Score=35.54 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=60.9
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHHcCC---CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCc
Q 014248 64 PVLAYWICGTNGDSKKMLRLLKAIYHP---RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGV 140 (428)
Q Consensus 64 ~kiAYLIl~~h~d~~~l~RLL~aLy~P---~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~ 140 (428)
|++..+|.+ ++..+.+.++|.+|..- .+.=+|=||..+++...+.+++ +....+|.++... -.|.
T Consensus 93 p~vsviIp~-~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~-------~~~~~~i~~i~~~----~~~~ 160 (625)
T 2z86_A 93 DGLSIVIPT-YNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVRE-------FESLLNIKYVRQK----DYGY 160 (625)
T ss_dssp CCEEEEEEE-SSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHT-------TTTTSCEEEEEEC----CCSC
T ss_pred CcEEEEEec-CCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHH-------hhhcCCeEEEEeC----CCCc
Confidence 689999988 88899999999999532 2444666776666654443332 1223678777532 2344
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 141 SALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 141 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
+...|.-.+++.+ .-||++.|.+.+.+-
T Consensus 161 g~~~a~N~g~~~a-----~g~~v~~lD~D~~~~ 188 (625)
T 2z86_A 161 QLCAVRNLGLRAA-----KYNYVAILDCDMAPN 188 (625)
T ss_dssp CHHHHHHHHHHHC-----CSSEEEEECTTEEEC
T ss_pred chhHHHHHHHHhC-----CcCEEEEECCCCCCC
Confidence 4555555555543 458999999999984
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=67.86 E-value=17 Score=37.93 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=68.9
Q ss_pred CCCeEEEEEEeeCCCH-HHHHHHHHHHc--CCCC--EEEEEEeCCCChhH-HHHHHHHhhhhhhhhccCceEEeCcccee
Q 014248 62 YPPVLAYWICGTNGDS-KKMLRLLKAIY--HPRN--QYLLQLDAGAPESE-RAELALKVQSEIVFKAFGNVDVVGASYAI 135 (428)
Q Consensus 62 ~p~kiAYLIl~~h~d~-~~l~RLL~aLy--~P~n--~y~IHvD~ks~~~~-~~~L~~~v~~~~~~~~~~NV~vv~k~~~V 135 (428)
..|++..+|.+ ++.. +.+.+.|+++. .+.+ .=+|=||..|++.. .+.+++++ ...++|+++....
T Consensus 110 ~~P~vSVIIp~-yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~------~~~~~v~vi~~~~-- 180 (570)
T 2d7i_A 110 TLPNTSIIIPF-HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYM------ALFPSVRILRTKK-- 180 (570)
T ss_dssp SCCCEEEEEEE-SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHH------TTSTTEEEEECSS--
T ss_pred CCCCeEEEEEE-CCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHH------HhCCeEEEEECCC--
Confidence 35789999988 7775 89999999884 2333 23677888787665 55555433 3458899985322
Q ss_pred eecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHcc
Q 014248 136 DKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFTF 185 (428)
Q Consensus 136 ~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~~ 185 (428)
......|-..+++.+ .-||++.|.+.|.+-.. .+.++..+..
T Consensus 181 ---n~G~~~A~N~G~~~A-----~gd~i~fLD~D~~~~p~~L~~ll~~l~~ 223 (570)
T 2d7i_A 181 ---REGLIRTRMLGASVA-----TGDVITFLDSHCEANVNWLPPLLDRIAR 223 (570)
T ss_dssp ---CCCHHHHHHHHHHHC-----CSSEEEECCSSEEECTTCSHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhc-----CCCEEEEEcCCccccccHHHHHHHHHHh
Confidence 134556666666654 24899999999988322 3345555543
No 7
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=65.74 E-value=25 Score=35.21 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=66.9
Q ss_pred CCCeEEEEEEeeCCCH-HHHHHHHHHHcC--CCC--EEEEEEeCCCChh-HHHHHHHHhhhhhhhhccC-ceEEeCccce
Q 014248 62 YPPVLAYWICGTNGDS-KKMLRLLKAIYH--PRN--QYLLQLDAGAPES-ERAELALKVQSEIVFKAFG-NVDVVGASYA 134 (428)
Q Consensus 62 ~p~kiAYLIl~~h~d~-~~l~RLL~aLy~--P~n--~y~IHvD~ks~~~-~~~~L~~~v~~~~~~~~~~-NV~vv~k~~~ 134 (428)
..|++..+|.+ ++.. +.+.++|++|.. +.+ .=+|=||..+++. ..+.+++++ ..++ +|.++.....
T Consensus 27 ~~p~vSVIIp~-yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~------~~~~~~v~vi~~~~n 99 (472)
T 1xhb_A 27 NLPTTSVVIVF-HNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYV------KKLKVPVHVIRMEQR 99 (472)
T ss_dssp CCCCEEEEEEE-SSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHH------HSSSSCEEEEECSSC
T ss_pred CCCCeEEEEEe-CCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHH------HHCCCcEEEEECCCC
Confidence 45789999988 7776 999999999852 223 2467788877763 444454432 3456 8998854321
Q ss_pred eeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHc
Q 014248 135 IDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFT 184 (428)
Q Consensus 135 V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~ 184 (428)
.+...|-..+++.+ .-||++.|.+.|.+-.. .+.+++.+.
T Consensus 100 -----~G~~~a~N~g~~~A-----~gd~i~flD~D~~~~p~~L~~ll~~~~ 140 (472)
T 1xhb_A 100 -----SGLIRARLKGAAVS-----RGQVITFLDAHCECTAGWLEPLLARIK 140 (472)
T ss_dssp -----CCHHHHHHHHHHHC-----CSSEEEEEESSEEECTTCHHHHHHHHH
T ss_pred -----CChHHHHHHHHHhc-----cCCeEEEECCCeEeCccHHHHHHHHHH
Confidence 22445555555543 35899999999885432 344445454
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=64.90 E-value=40 Score=35.05 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=59.9
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCc
Q 014248 63 PPVLAYWICGTNGDSKKMLRLLKAIYHP--RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGV 140 (428)
Q Consensus 63 p~kiAYLIl~~h~d~~~l~RLL~aLy~P--~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~ 140 (428)
.|+++.+|.+ ++..+.+.+.|+.+... .+.=+|=||..+++...+.++++ ....++|.++... ..|
T Consensus 374 ~~~vsiii~~-yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~------~~~~~~i~~~~~~----n~G- 441 (625)
T 2z86_A 374 VPLVSIYIPA-YNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEH------YANHPRVRFISQK----NKG- 441 (625)
T ss_dssp SCSEEEEEEE-SSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHH------HTTCTTEEEEEEC----CCC-
T ss_pred CCeEEEEEeC-CCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHH------HhhCCcEEEEeCC----CCC-
Confidence 4688988887 78889999999998521 23445667776766554444432 2346789888532 234
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 141 SALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 141 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
...|.-.+++.+ .-||++.|.+.|++.
T Consensus 442 -~~~a~n~g~~~a-----~g~~i~~ld~D~~~~ 468 (625)
T 2z86_A 442 -IGSASNTAVRLC-----RGFYIGQLDSDDFLE 468 (625)
T ss_dssp -HHHHHHHHHHHC-----CSSEEEECCTTCEEC
T ss_pred -HHHHHHHHHHhc-----CCCEEEEECCCcccC
Confidence 333444444432 348999999999863
No 9
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=62.30 E-value=38 Score=30.13 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcC-C-CCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHHHHHHHHHHh
Q 014248 78 KKMLRLLKAIYH-P-RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLLK 155 (428)
Q Consensus 78 ~~l~RLL~aLy~-P-~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL~ 155 (428)
..+.+.++++.. + -..++|-.+. ++ +.++++ .+ ++.++........++.++..+..++++.+ .
T Consensus 30 pll~~~l~~~~~~~~~~~ivvv~~~----~~---i~~~~~------~~-~~~~~~~~~~~~~~~~g~~~sv~~~l~~~-~ 94 (228)
T 1ezi_A 30 SLLGHTINAAISSKCFDRIIVSTDG----GL---IAEEAK------NF-GVEVVLRPAELASDTASSISGVIHALETI-G 94 (228)
T ss_dssp EHHHHHHHHHHHHCCCSEEEEEESC----HH---HHHHHH------HT-TCEEEECCC------CHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHhCCCCCEEEEECCC----HH---HHHHHH------Hc-CCEEEeCchHHcCCCCChHHHHHHHHHHh-C
Confidence 456666766642 3 2456666652 22 222111 12 34443333334456777777777777766 2
Q ss_pred cCCCCcEEEecCCCcccccChhHHHHHHcc
Q 014248 156 ISTNWDWFIPLSPLDYPLMSQDDVLHAFTF 185 (428)
Q Consensus 156 ~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~ 185 (428)
.+.|+++.+. .|.|+.+.+.|.+.+..
T Consensus 95 --~~~d~vlv~~-~D~P~~~~~~i~~l~~~ 121 (228)
T 1ezi_A 95 --SNSGTVTLLQ-PTSPLRTGAHIREAFSL 121 (228)
T ss_dssp --CCSEEEEECC-TTCTTCCHHHHHHHHTT
T ss_pred --CCCCEEEEEc-CCCCcCCHHHHHHHHHH
Confidence 3457776554 69999999998776654
No 10
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=57.38 E-value=44 Score=33.81 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=60.1
Q ss_pred CCCeEEEEEEeeCCCHH-HHHHHHHHHc--CCCC--EEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceee
Q 014248 62 YPPVLAYWICGTNGDSK-KMLRLLKAIY--HPRN--QYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAID 136 (428)
Q Consensus 62 ~p~kiAYLIl~~h~d~~-~l~RLL~aLy--~P~n--~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~ 136 (428)
..|++..+|.+ ++..+ .|.+.|+++. .+.+ .=+|=||..|++....++ ....++|+++....
T Consensus 64 ~~p~vSVIIp~-yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------~~~~~~v~vi~~~~--- 130 (501)
T 2ffu_A 64 DLPATSVVITF-HNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------LGKIEKVRVLRNDR--- 130 (501)
T ss_dssp SCCCEEEEEEE-SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG---------GGGBTTEEEEECSS---
T ss_pred CCCCEEEEEEe-CcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH---------HhcCCCEEEEECCC---
Confidence 45688999988 77766 8889888884 2333 246778887776543221 23478999985321
Q ss_pred ecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 137 KMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 137 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
..+...|-..+++.+ .-||++.|.+.|.+-
T Consensus 131 --n~G~~~A~N~G~~~A-----~gd~i~flD~D~~~~ 160 (501)
T 2ffu_A 131 --REGLMRSRVRGADAA-----QAKVLTFLDSHCECN 160 (501)
T ss_dssp --CCHHHHHHHHHHHHC-----CSSEEEECCSSEEEC
T ss_pred --CcCHHHHHHHHHHhc-----CCCEEEEECCCcccC
Confidence 123556666665554 348999999988763
No 11
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=51.99 E-value=1.2e+02 Score=32.96 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=53.7
Q ss_pred CCCCeEEEEEEeeCCCHH-HHHHHHHHHc---CCC-CEEEEEEeCCCChhH---------------HHHHHHHhhhhhhh
Q 014248 61 DYPPVLAYWICGTNGDSK-KMLRLLKAIY---HPR-NQYLLQLDAGAPESE---------------RAELALKVQSEIVF 120 (428)
Q Consensus 61 ~~p~kiAYLIl~~h~d~~-~l~RLL~aLy---~P~-n~y~IHvD~ks~~~~---------------~~~L~~~v~~~~~~ 120 (428)
+..|++..+|-+ ++..+ .++++|+++. .|+ ..-+|=+|..+++.. +..++++
T Consensus 137 ~~~P~VSViIPt-yNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~------- 208 (802)
T 4hg6_A 137 EELPTVDILVPS-YNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQL------- 208 (802)
T ss_dssp TTCCCEEEEEEC-TTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHH-------
T ss_pred cCCCcEEEEEEE-CCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHH-------
Confidence 345689999988 66554 4588998883 343 244666777665443 1222221
Q ss_pred hccCceEEeCccceeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc
Q 014248 121 KAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPL 173 (428)
Q Consensus 121 ~~~~NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 173 (428)
....++.++.... .++|- ..| +..+++.. +-||++.+.++|.+-
T Consensus 209 ~~~~~v~~i~~~~--~~~GK--a~a----lN~gl~~a-~gd~Il~lDaD~~~~ 252 (802)
T 4hg6_A 209 CRELGVVYSTRER--NEHAK--AGN----MSAALERL-KGELVVVFDADHVPS 252 (802)
T ss_dssp HHHHTCEEEECSS--CCSHH--HHH----HHHHHHHC-CCSEEEECCTTEEEC
T ss_pred HHhcCcEEEEecC--CCCcc--hHH----HHHHHHhc-CCCEEEEECCCCCcC
Confidence 1123566654222 23332 222 22333332 569999999999884
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=38.69 E-value=1.4e+02 Score=28.27 Aligned_cols=116 Identities=9% Similarity=0.007 Sum_probs=64.7
Q ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeec
Q 014248 62 YPPVLAYWICGTNGDSKKMLRLLKAIYH---PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKM 138 (428)
Q Consensus 62 ~p~kiAYLIl~~h~d~~~l~RLL~aLy~---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wg 138 (428)
..|++..+|-+ ++..+.+.++|+.|.. |...=+|=||..|++...+.++++.. ....++.++.. . -.-.
T Consensus 46 ~~~~vSViIp~-yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~-----~~~~~~~~~~~-~-~~n~ 117 (329)
T 3ckj_A 46 AGRTISVVLPA-LDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGA-----RVVSREQALPE-V-PIRP 117 (329)
T ss_dssp TTCCEEEEEEE-SSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTC-----EEEEHHHHCTT-S-CCCC
T ss_pred cCCcEEEEEee-CCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhh-----hhccceeeecc-C-CCCC
Confidence 35789999988 8888899999999853 43233555888787665444433110 00122222210 0 1223
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccc--cChhHHHHHHccCCCCcceE
Q 014248 139 GVSALAATLHAAALLLKISTNWDWFIPLSPLDYPL--MSQDDVLHAFTFLPRDLNFI 193 (428)
Q Consensus 139 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL--kt~ddi~~~f~~~~~~~nFI 193 (428)
| .-.|.-.+++.+ .-||++.|.+.|..+ -....+...+.. +.+..++
T Consensus 118 G--~~~a~n~g~~~a-----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~-~~~~~~v 166 (329)
T 3ckj_A 118 G--KGEALWRSLAAS-----RGDIVVFVDSDLINPHPMFVPWLVGPLLT-GDGVHLV 166 (329)
T ss_dssp S--HHHHHHHHHHHC-----CCSEEEECCTTEESCCTTHHHHHHHHHHS-CSSCCEE
T ss_pred C--HHHHHHHHHHhC-----CCCEEEEECCCCCCcChHHHHHHHHHHHh-CCCccEE
Confidence 3 334444555433 348999999999833 334566665443 2334444
No 13
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=34.39 E-value=1.3e+02 Score=26.65 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=18.2
Q ss_pred CCcEEEecCCCcccccChhHHHHHHc
Q 014248 159 NWDWFIPLSPLDYPLMSQDDVLHAFT 184 (428)
Q Consensus 159 ~wdyfi~LSgsDyPLkt~ddi~~~f~ 184 (428)
+.|+++.+. .|-|+.+.+.|...+.
T Consensus 94 ~~d~vlv~~-~D~Pli~~~~i~~l~~ 118 (229)
T 1qwj_A 94 EVDIVGNIQ-ATSPCLHPTDLQKVAE 118 (229)
T ss_dssp TCSEEEEEC-TTCTTCCHHHHHHHHH
T ss_pred CCCEEEEec-CCCCcCCHHHHHHHHH
Confidence 468887775 5899998887765543
No 14
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=33.78 E-value=2.1e+02 Score=26.88 Aligned_cols=78 Identities=12% Similarity=0.030 Sum_probs=48.0
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHcC----CCCEE-EEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeee
Q 014248 63 PPVLAYWICGTNGDSKKMLRLLKAIYH----PRNQY-LLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDK 137 (428)
Q Consensus 63 p~kiAYLIl~~h~d~~~l~RLL~aLy~----P~n~y-~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~w 137 (428)
.++++.+|.+ ++..+.|.++|+.|.. ....| +|-||-..+
T Consensus 64 ~~~VSIIIP~-yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d---------------------------------- 108 (287)
T 2fy7_A 64 PHKVAIIIPF-RNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGD---------------------------------- 108 (287)
T ss_dssp SCEEEEEEEE-SSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSS----------------------------------
T ss_pred CCcEEEEEee-CCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCC----------------------------------
Confidence 4689999987 8999999999999861 11111 222332111
Q ss_pred cCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccCh
Q 014248 138 MGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQ 176 (428)
Q Consensus 138 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ 176 (428)
+++....|.-.++..+++. ...||++.|.+.+.|....
T Consensus 109 ~~f~~a~a~N~G~~~al~~-A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 109 TIFNRAKLLNVGFQEALKD-YDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHH-SCCCEEEEECTTEEESBTT
T ss_pred CccchhhhhhhHHHHHHHh-CCCCEEEEECCCcccCCCc
Confidence 1223333333344344454 3679999999999988763
No 15
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Probab=24.65 E-value=30 Score=33.81 Aligned_cols=43 Identities=16% Similarity=0.454 Sum_probs=34.5
Q ss_pred CCCcEEEec----CCCccc--ccChhHHHHHHccCCCCcceEeeecCCCc
Q 014248 158 TNWDWFIPL----SPLDYP--LMSQDDVLHAFTFLPRDLNFIDFTTNTGW 201 (428)
Q Consensus 158 ~~wdyfi~L----SgsDyP--Lkt~ddi~~~f~~~~~~~nFI~~~~~~~w 201 (428)
..|||+|=- .|-||| +...++|.+.|++. ++.++|+..+...|
T Consensus 74 ~~WsyiVEr~~~~ng~CYPG~~~d~eeLR~l~ss~-~s~er~~~~p~~~W 122 (319)
T 1jsd_A 74 REWSYIVERPSAVNGMCYPGNVENLEELRSLFSSA-SSYQRIQIFPDTIW 122 (319)
T ss_dssp EECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHHS-SEEEEEESSCGGGC
T ss_pred CceEEEEeCCCCCCCcccCcccCCHHHHHHHHhcc-CccceEEecCCcee
Confidence 679999984 568999 67888999888775 67888888766666
No 16
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=23.44 E-value=1.6e+02 Score=29.06 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=63.6
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHcC-----CCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccc----
Q 014248 63 PPVLAYWICGTNGDSKKMLRLLKAIYH-----PRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASY---- 133 (428)
Q Consensus 63 p~kiAYLIl~~h~d~~~l~RLL~aLy~-----P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~---- 133 (428)
.|++..+|-+ ++..+.+.++|+.|.. |.+.=+|=||..|++...+.+++ +. ..++....
T Consensus 93 ~p~vSVVIP~-yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~----------~~-~~v~~~~~~~i~ 160 (387)
T 3f1y_A 93 GLTVSAVLPS-RNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAAS----------HG-AEVYSENELMSG 160 (387)
T ss_dssp TCCEEEEEEE-SSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHH----------TT-CEEEEGGGTTGG
T ss_pred CCeEEEEEEc-CCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHH----------hC-chhcccceeEec
Confidence 5789999988 8888888888888732 44555677888887765544332 11 12221111
Q ss_pred eeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCccc--ccChhHHHHHHccCCCCcceEe
Q 014248 134 AIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYP--LMSQDDVLHAFTFLPRDLNFID 194 (428)
Q Consensus 134 ~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyP--Lkt~ddi~~~f~~~~~~~nFI~ 194 (428)
.-...| .-.|...+++. . .-||++.|.+.|.. -.....++..+.. +.+..++-
T Consensus 161 ~~~n~G--~g~A~n~G~~~----A-~gd~i~~lDaD~~~~~p~~L~~l~~~l~~-~p~~d~v~ 215 (387)
T 3f1y_A 161 YGDAHG--KGDAMWRALSV----T-RGDLVLYIDADTRDFRPQLAYGVLGPVLE-VPGVRFVK 215 (387)
T ss_dssp GCSCCS--HHHHHHHHTTT----C-CSSEEEECCTTCSSCCTHHHHTTHHHHHH-STTCCEEE
T ss_pred CCccCC--HHHHHHHHHHh----c-CCCEEEEEcCCCCcCCHHHHHHHHHHHHH-CCCceEEE
Confidence 012333 33444444433 2 46999999999873 3344555555543 22344443
No 17
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3qqb_A* 3qqe_A* 3qqo_A* 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
Probab=23.05 E-value=34 Score=33.52 Aligned_cols=44 Identities=14% Similarity=0.499 Sum_probs=32.4
Q ss_pred CCCCcEEEe----cCCCccc--ccChhHHHHHHccCCCCcceEeeecCCCc
Q 014248 157 STNWDWFIP----LSPLDYP--LMSQDDVLHAFTFLPRDLNFIDFTTNTGW 201 (428)
Q Consensus 157 ~~~wdyfi~----LSgsDyP--Lkt~ddi~~~f~~~~~~~nFI~~~~~~~w 201 (428)
...|||+|= ..|.||| +...++|.+.|++. ++.++|+..+...|
T Consensus 75 ~~~WsyIVEr~~a~ng~CYPG~~~d~eeLR~l~ss~-~~~erieifp~~~W 124 (327)
T 3ku3_A 75 VPEWSYIMEKENPRDGLCYPGSFNDYEELKHLLSSV-KHFEKVKILPKDRW 124 (327)
T ss_dssp CCCCSCEEECSSCSBSCSSCEEETTHHHHHHHHTTE-EEEEEECCSCGGGC
T ss_pred CceeEEEEEcCCCCCCcccCCccCCHHHHHHHHhcc-CCceeEEecCCCcc
Confidence 368999998 4567999 57778888877654 66788876554455
No 18
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=22.08 E-value=27 Score=27.64 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=14.7
Q ss_pred CCCcccccChhHHHHHH
Q 014248 167 SPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 167 SgsDyPLkt~ddi~~~f 183 (428)
.|.+|||+|+.||...|
T Consensus 21 ~~a~FPI~s~~EL~~Al 37 (84)
T 1iio_A 21 AGADFPINSPEELMAAL 37 (84)
T ss_dssp TTSSSTTBHHHHHHHHC
T ss_pred cCCCCCCCCHHHHHHhC
Confidence 35799999999998876
Done!