Query 014248
Match_columns 428
No_of_seqs 228 out of 846
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 08:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014248.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014248hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 82.7 4.2 0.0003 34.7 10.7 115 64-193 1-122 (255)
2 d1omza_ c.68.1.15 (A:) Alpha-1 76.0 4.3 0.00031 33.1 8.1 101 65-185 4-108 (265)
3 d1xhba2 c.68.1.17 (A:95-422) P 49.1 62 0.0045 27.9 11.2 108 63-186 21-135 (328)
4 d1qwja_ c.68.1.13 (A:) CMP acy 36.4 82 0.006 25.3 9.3 56 125-185 64-119 (228)
5 d1iioa_ a.39.4.1 (A:) Hypothet 29.1 7.2 0.00052 29.0 0.7 20 165-184 60-79 (84)
6 d1iioa_ a.39.4.1 (A:) Hypothet 25.9 9.5 0.0007 28.3 0.9 18 166-183 20-37 (84)
7 d2bgka1 c.2.1.2 (A:11-278) Rhi 21.0 62 0.0045 27.6 5.7 26 75-100 38-63 (268)
8 d3beda1 c.54.1.1 (A:1-132) PTS 20.4 1.3E+02 0.0096 23.0 7.1 94 64-174 1-97 (132)
9 d1ll2a_ c.68.1.14 (A:) Glycoge 20.4 57 0.0041 27.5 5.3 99 66-179 4-114 (263)
10 d1ktea_ c.47.1.1 (A:) Glutared 20.1 1.2E+02 0.0084 22.1 6.5 64 78-148 26-90 (105)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=82.74 E-value=4.2 Score=34.66 Aligned_cols=115 Identities=8% Similarity=0.035 Sum_probs=67.7
Q ss_pred CeEEEEEEeeCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceee---e
Q 014248 64 PVLAYWICGTNGDSKKMLRLLKAIY---HPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAID---K 137 (428)
Q Consensus 64 ~kiAYLIl~~h~d~~~l~RLL~aLy---~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~---w 137 (428)
|++..+|.+ ++..+.+++.|+.+- .+ +.=+|=||-.|++...+.|+++. .-.+|+++....... -
T Consensus 1 P~vSiiip~-yN~~~~l~~~l~Si~~Qt~~-~~eiivvdd~S~d~t~~~l~~~~-------~~~~i~~~~~~~~~~~~~~ 71 (255)
T d1qg8a_ 1 PKVSVIMTS-YNKSDYVAKSISSILSQTFS-DFELFIMDDNSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERT 71 (255)
T ss_dssp CCEEEEEEE-SSCTTTHHHHHHHHHTCSCC-CEEEEEEECSCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHH
T ss_pred CEEEEEEec-CCCHHHHHHHHHHHHhCCCC-CeEEEEEECCCCccHHHHHHHhh-------hhccccccccccccccccc
Confidence 678999988 777888999999983 23 34456666667777665554322 235677765432210 1
Q ss_pred cCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHccCCCCcceE
Q 014248 138 MGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFTFLPRDLNFI 193 (428)
Q Consensus 138 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~~~~~~~nFI 193 (428)
...+.-.|-=. +++.. .-||++.|-+.|++..+ .+.+...|.. +.+..++
T Consensus 72 ~~~g~~~a~N~----gi~~a-~g~~i~~lD~Dd~~~p~~l~~~~~~~~~-~~~~~~v 122 (255)
T d1qg8a_ 72 EKTRYAALINQ----AIEMA-EGEYITYATDDNIYMPDRLLKMVRELDT-HPEKAVI 122 (255)
T ss_dssp SSCHHHHHHHH----HHHHC-CCSEEEEEETTEEECTTHHHHHHHHHHH-CTTCCEE
T ss_pred ccchhcccccc----ccccc-ccccccccccccccccchHHHHHHHHHh-CCCCCeE
Confidence 12222222222 33332 35899999999999765 3445555543 3334554
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=76.00 E-value=4.3 Score=33.06 Aligned_cols=101 Identities=7% Similarity=-0.025 Sum_probs=57.8
Q ss_pred eEEEEEEeeCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCcc
Q 014248 65 VLAYWICGTNGDSKKMLRLLKAIY---HPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVS 141 (428)
Q Consensus 65 kiAYLIl~~h~d~~~l~RLL~aLy---~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S 141 (428)
++..+|.+ ++.++.|+++|++|- ++ +..+|..|..++ ...+.++... ...+.+.+..+ .++|.+
T Consensus 4 ~~tvii~t-yn~~~~l~~~l~sl~~q~~~-~~~iiV~d~~sd-~~~~~i~~~~------~~~~~~~~~~~----~~~g~~ 70 (265)
T d1omza_ 4 SFTLIMQT-YNRTDLLLRLLNHYQAVPSL-HKVIVVWNNVGE-KGPEELWNSL------GPHPIPVIFKP----QTANKM 70 (265)
T ss_dssp CEEEEEEE-SSCHHHHHHHHHHHTTSTTE-EEEEEEECCTTC-CCTHHHHHHT------CCCSSCEEEEE----CSSCCG
T ss_pred cEEEEEEc-CCCHHHHHHHHHHHHcCCCc-CeEEEEECCCCC-ccHHHHHHHh------cccceEEEEec----CCCCch
Confidence 56778877 899999999999994 33 345555655444 3334444322 22333333322 345544
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHcc
Q 014248 142 ALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFTF 185 (428)
Q Consensus 142 ~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~~ 185 (428)
. |--. +++.. +=||++.|-+.|.+-.. .+.+...+..
T Consensus 71 ~--a~n~----~~~~a-~ge~i~~lD~D~~~~~~~l~~l~~~~~~ 108 (265)
T d1omza_ 71 R--NRLQ----VFPEV-ETNAVLMVDDDTLISAQDLVFAFSIWQQ 108 (265)
T ss_dssp G--GGGS----CCTTC-CSSEEEEECTTEEECHHHHHHHHHHHTT
T ss_pred h--hhhh----hHHhC-CcCEEEEeCcccCCCHHHHHHHHHHHHh
Confidence 3 1122 33332 45899999999988553 4445555543
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.14 E-value=62 Score=27.94 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=64.8
Q ss_pred CCeEEEEEEeeCCC-HHHHHHHHHHHc--CC-CCE-EEEEEeCCCChhHH-HHHHHHhhhhhhhhccCceEEeCccceee
Q 014248 63 PPVLAYWICGTNGD-SKKMLRLLKAIY--HP-RNQ-YLLQLDAGAPESER-AELALKVQSEIVFKAFGNVDVVGASYAID 136 (428)
Q Consensus 63 p~kiAYLIl~~h~d-~~~l~RLL~aLy--~P-~n~-y~IHvD~ks~~~~~-~~L~~~v~~~~~~~~~~NV~vv~k~~~V~ 136 (428)
.|.+..+|-+ |+. .+.|.|+|+++- .| ... =+|-||-.|++... ..+.++++ ...++|+++... .
T Consensus 21 ~P~vSIIIp~-yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~-----~~~~~i~vi~~~---~ 91 (328)
T d1xhba2 21 LPTTSVVIVF-HNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK-----KLKVPVHVIRME---Q 91 (328)
T ss_dssp CCCEEEEEEE-SSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH-----SSSSCEEEEECS---S
T ss_pred CCCEEEEEec-cCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHH-----hcCCCeEEEEec---c
Confidence 4678888887 775 467899998873 22 322 36888988765532 33333332 234678887532 1
Q ss_pred ecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHccC
Q 014248 137 KMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFTFL 186 (428)
Q Consensus 137 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~~~ 186 (428)
-.|+ ..|--.|++.+ .=+|++.|-+.|.+-.. .+.+...|...
T Consensus 92 n~G~--~~a~N~Gi~~a-----~gd~i~flD~D~~~~p~~l~~l~~~~~~~ 135 (328)
T d1xhba2 92 RSGL--IRARLKGAAVS-----RGQVITFLDAHCECTAGWLEPLLARIKHD 135 (328)
T ss_dssp CCCH--HHHHHHHHHHC-----CSSEEEEEESSEEECTTCHHHHHHHHHHC
T ss_pred cccc--hHHHHHHHHhh-----hcceeeecCcccccChhHHHHHHHHHhcC
Confidence 2333 34444544443 34799999999987654 34555556543
No 4
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.41 E-value=82 Score=25.27 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=35.2
Q ss_pred ceEEeCccceeeecCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHcc
Q 014248 125 NVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTF 185 (428)
Q Consensus 125 NV~vv~k~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~ 185 (428)
++.++..+....-+..+.+.+..+ +++...+.++++++.+ |-|+.+.++|.+.+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~iv~~~~-~~P~~~~~~I~~~i~~ 119 (228)
T d1qwja_ 64 GAQVHRRSSETSKDSSTSLDAIVE----FLNYHNEVDIVGNIQA-TSPCLHPTDLQKVAEM 119 (228)
T ss_dssp TCEEEECCGGGSSTTCCHHHHHHH----HHTTCTTCSEEEEECT-TCTTCCHHHHHHHHHH
T ss_pred Cccccccccccccccchhhhhhhh----ccccccccceeeeecc-cccccCchhhhhhhhh
Confidence 344443333333444455554444 5555567899999986 6799999988776643
No 5
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.06 E-value=7.2 Score=29.02 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.9
Q ss_pred ecCCCcccccChhHHHHHHc
Q 014248 165 PLSPLDYPLMSQDDVLHAFT 184 (428)
Q Consensus 165 ~LSgsDyPLkt~ddi~~~f~ 184 (428)
+|.++|||+++.+++.+.+-
T Consensus 60 ~l~~~DFP~ksae~lad~ii 79 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHHH
Confidence 57789999999999987664
No 6
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.95 E-value=9.5 Score=28.30 Aligned_cols=18 Identities=28% Similarity=0.665 Sum_probs=15.2
Q ss_pred cCCCcccccChhHHHHHH
Q 014248 166 LSPLDYPLMSQDDVLHAF 183 (428)
Q Consensus 166 LSgsDyPLkt~ddi~~~f 183 (428)
+.|.+|||.|++||...|
T Consensus 20 f~gA~FPI~s~~eL~~al 37 (84)
T d1iioa_ 20 LAGADFPINSPEELMAAL 37 (84)
T ss_dssp HTTSSSTTBHHHHHHHHC
T ss_pred HcCCCCCCCCHHHHHHhC
Confidence 346799999999998876
No 7
>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}
Probab=20.96 E-value=62 Score=27.61 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEEEeC
Q 014248 75 GDSKKMLRLLKAIYHPRNQYLLQLDA 100 (428)
Q Consensus 75 ~d~~~l~RLL~aLy~P~n~y~IHvD~ 100 (428)
.+.+.++++.+.+..++...+++.|-
T Consensus 38 r~~~~~~~~~~~l~~~~~~~~~~~Dv 63 (268)
T d2bgka1 38 IADDHGQKVCNNIGSPDVISFVHCDV 63 (268)
T ss_dssp SCHHHHHHHHHHHCCTTTEEEEECCT
T ss_pred CCHHHHHHHHHHhcCCCceEEEEccC
Confidence 34444444444444444444444444
No 8
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]}
Probab=20.40 E-value=1.3e+02 Score=23.01 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=56.6
Q ss_pred CeEEEEEEeeCCCH-HHHHHHHHHHcC-CCCEEEEEEeCCCChh-HHHHHHHHhhhhhhhhccCceEEeCccceeeecCc
Q 014248 64 PVLAYWICGTNGDS-KKMLRLLKAIYH-PRNQYLLQLDAGAPES-ERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGV 140 (428)
Q Consensus 64 ~kiAYLIl~~h~d~-~~l~RLL~aLy~-P~n~y~IHvD~ks~~~-~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~ 140 (428)
|+...+|.+ |+.. .-+...++.+.- ..|..+|.+....+.+ ..+++.+.++. .. -..|-|+.+ ...|.+
T Consensus 1 Mk~kIii~s-HG~~A~gl~~s~~~i~G~~~~i~~i~l~~~~~~~~~~~~l~~~~~~---~~-~~~vliltD---l~GGTP 72 (132)
T d3beda1 1 MKPKLILMS-HGRMAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKE---AG-NVPTLVLAD---LKGGTP 72 (132)
T ss_dssp CCSEEEEEE-ETTHHHHHHHHHHHHHCTTCCCEEEEECTTTHHHHHHHHHHHHHHH---HC-SCCEEEEES---STTSHH
T ss_pred CCCCEEEEc-CHHHHHHHHHHHHHHcCCcCCeEEEEcCCCCCHHHHHHHHHHHHhh---CC-CCCEEEEEe---cccCCh
Confidence 455677776 7765 577777777763 3578888888776544 44556655442 11 245766643 344445
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEecCCCccccc
Q 014248 141 SALAATLHAAALLLKISTNWDWFIPLSPLDYPLM 174 (428)
Q Consensus 141 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLk 174 (428)
..+++. ++.. .+-+..+||-.+|+.
T Consensus 73 ~N~a~~------~~~~---~~~v~visG~NLpml 97 (132)
T d3beda1 73 CNVAMM------AMGT---YPQLRVVAGLNLAMA 97 (132)
T ss_dssp HHHHHH------HTTT---CTTEEEEESCCHHHH
T ss_pred hHHHHH------HHhc---CCCEEEEECCCHHHH
Confidence 544332 2222 233788999999975
No 9
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=20.37 E-value=57 Score=27.54 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=55.7
Q ss_pred EEEEEEeeCCCH-HHHHHHHHHH--cCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCcc-
Q 014248 66 LAYWICGTNGDS-KKMLRLLKAI--YHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVS- 141 (428)
Q Consensus 66 iAYLIl~~h~d~-~~l~RLL~aL--y~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S- 141 (428)
-||+-+++..+. ..+.-|+..| .++...++|-++..-+++.++.|... ...+..+.- +.+....
T Consensus 4 ~A~vt~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~---------~~~~~~v~~---i~~~~~~~ 71 (263)
T d1ll2a_ 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIV---------FDEVITVDI---LDSGDSAH 71 (263)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHH---------CSEEEECCT---TSTTSTTH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHh---------CCcceeEEe---ecCcchhh
Confidence 388888743332 2344555555 24666777777777777777776541 223333321 1111110
Q ss_pred -------HHHHH-HHHHHHHHhcCCCCcEEEecCCCcccccChhHH
Q 014248 142 -------ALAAT-LHAAALLLKISTNWDWFIPLSPLDYPLMSQDDV 179 (428)
Q Consensus 142 -------~V~At-L~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi 179 (428)
...++ .++... . -.++|.++.|.+.-.++.+.++|
T Consensus 72 ~~~~~~~~~~~ty~Kl~i~--~-l~~ydkvlYLDaD~lv~~~id~L 114 (263)
T d1ll2a_ 72 LTLMKRPELGVTLTKLHCW--S-LTQYSKCVFMDADTLVLANIDDL 114 (263)
T ss_dssp HHHHHCGGGHHHHHHGGGG--G-CTTCSEEEEECTTEEECSCCGGG
T ss_pred hhhhccccchhhhHHHHHh--h-hcccceEEEeCCCEEEecCHHHH
Confidence 11122 222111 1 25799999999999999999998
No 10
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=20.13 E-value=1.2e+02 Score=22.10 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCC-CEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCccHHHHHHH
Q 014248 78 KKMLRLLKAIYHPR-NQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLH 148 (428)
Q Consensus 78 ~~l~RLL~aLy~P~-n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S~V~AtL~ 148 (428)
.+.++||+.+..+. ...++-+|......+.++....... ..-+|.|+|=++ ..||++-+.+...
T Consensus 26 ~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g---~~tvPqIfi~g~----~IGG~~el~~l~~ 90 (105)
T d1ktea_ 26 RKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG---ARTVPRVFIGKE----CIGGCTDLESMHK 90 (105)
T ss_dssp HHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHS---CCCSCEEEETTE----EEESHHHHHHHHH
T ss_pred HHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccC---CCcCcEEEECCE----EEecHHHHHHHHH
Confidence 68999999987543 3557788877665544433221111 123799977442 6799998876554
Done!