Query 014249
Match_columns 428
No_of_seqs 312 out of 2592
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ck3_D ATP synthase subunit be 100.0 1.7E-88 5.9E-93 706.1 35.0 339 81-421 8-346 (482)
2 1fx0_B ATP synthase beta chain 100.0 7.4E-89 2.5E-93 711.2 28.8 335 86-421 19-359 (498)
3 3oaa_A ATP synthase subunit al 100.0 1.8E-84 6.3E-89 677.2 29.9 323 84-421 25-362 (513)
4 2qe7_A ATP synthase subunit al 100.0 9.1E-84 3.1E-88 673.4 30.3 320 86-421 27-351 (502)
5 2ck3_A ATP synthase subunit al 100.0 9.6E-84 3.3E-88 674.3 29.9 322 85-421 26-359 (510)
6 3vr4_D V-type sodium ATPase su 100.0 1.3E-83 4.3E-88 666.4 30.3 324 85-421 10-343 (465)
7 3gqb_B V-type ATP synthase bet 100.0 2.7E-83 9.1E-88 663.8 30.9 325 84-421 5-346 (464)
8 2r9v_A ATP synthase subunit al 100.0 3.9E-83 1.3E-87 669.0 28.5 321 85-421 38-364 (515)
9 2c61_A A-type ATP synthase non 100.0 1.5E-83 5.2E-88 668.7 24.6 326 85-421 12-344 (469)
10 1sky_E F1-ATPase, F1-ATP synth 100.0 5.3E-82 1.8E-86 658.3 32.6 328 86-421 2-338 (473)
11 1fx0_A ATP synthase alpha chai 100.0 1.1E-83 3.8E-88 673.4 17.8 321 85-421 27-352 (507)
12 3vr4_A V-type sodium ATPase ca 100.0 7.4E-79 2.5E-83 642.2 26.4 327 85-421 8-429 (600)
13 3gqb_A V-type ATP synthase alp 100.0 9.7E-79 3.3E-83 639.1 22.9 325 87-421 3-416 (578)
14 3mfy_A V-type ATP synthase alp 100.0 1.3E-78 4.3E-83 638.4 12.2 325 86-421 3-424 (588)
15 3l0o_A Transcription terminati 100.0 2.8E-60 9.6E-65 482.5 15.9 257 144-421 96-356 (427)
16 3ice_A Transcription terminati 100.0 7E-58 2.4E-62 465.5 15.3 257 145-421 93-355 (422)
17 2dpy_A FLII, flagellum-specifi 100.0 3.8E-51 1.3E-55 424.7 28.1 323 85-422 8-343 (438)
18 2obl_A ESCN; ATPase, hydrolase 100.0 1E-47 3.5E-52 388.1 17.6 251 158-421 2-253 (347)
19 3pvs_A Replication-associated 98.9 5E-10 1.7E-14 116.3 2.5 106 194-345 18-123 (447)
20 3uk6_A RUVB-like 2; hexameric 98.0 3.3E-06 1.1E-10 83.3 5.5 56 196-251 37-95 (368)
21 2chg_A Replication factor C sm 98.0 3.8E-06 1.3E-10 75.3 5.2 54 195-251 10-63 (226)
22 2v1u_A Cell division control p 97.9 3.4E-05 1.2E-09 75.7 9.3 105 218-343 36-145 (387)
23 2chq_A Replication factor C sm 97.9 6E-06 2.1E-10 79.2 3.5 55 193-250 8-62 (319)
24 1iqp_A RFCS; clamp loader, ext 97.9 6E-06 2E-10 79.5 3.5 54 194-250 17-70 (327)
25 3u61_B DNA polymerase accessor 97.8 1.6E-05 5.6E-10 77.3 6.1 55 193-250 17-72 (324)
26 1l8q_A Chromosomal replication 97.8 3E-05 1E-09 75.6 7.9 28 225-252 36-63 (324)
27 1jbk_A CLPB protein; beta barr 97.8 4.6E-05 1.6E-09 66.4 7.5 52 197-251 17-68 (195)
28 2z4s_A Chromosomal replication 97.8 3.6E-05 1.2E-09 79.3 7.4 37 226-262 130-167 (440)
29 1sxj_C Activator 1 40 kDa subu 97.8 1.1E-05 3.7E-10 79.6 3.4 55 193-250 16-70 (340)
30 1sxj_B Activator 1 37 kDa subu 97.7 1.9E-05 6.4E-10 75.9 4.2 54 194-250 13-66 (323)
31 1njg_A DNA polymerase III subu 97.7 1.6E-05 5.3E-10 71.8 3.3 55 194-251 15-70 (250)
32 3bos_A Putative DNA replicatio 97.7 2.3E-05 7.9E-10 71.6 4.1 38 215-252 41-78 (242)
33 1in4_A RUVB, holliday junction 97.7 5.7E-05 2E-09 74.6 7.0 55 193-250 16-75 (334)
34 2qby_A CDC6 homolog 1, cell di 97.7 0.00013 4.4E-09 71.3 9.5 106 217-343 36-143 (386)
35 3te6_A Regulatory protein SIR3 97.7 0.00011 3.7E-09 73.1 8.7 102 216-341 35-145 (318)
36 3h4m_A Proteasome-activating n 97.6 5.7E-05 2E-09 71.8 6.4 27 224-250 49-75 (285)
37 2p65_A Hypothetical protein PF 97.6 4.1E-05 1.4E-09 66.9 4.9 53 196-251 16-68 (187)
38 1sxj_D Activator 1 41 kDa subu 97.6 2.2E-05 7.6E-10 76.6 3.5 55 194-251 29-83 (353)
39 3io5_A Recombination and repai 97.6 0.00011 3.7E-09 73.4 8.4 111 208-341 5-124 (333)
40 2zts_A Putative uncharacterize 97.6 5.5E-05 1.9E-09 69.9 5.8 63 208-270 10-74 (251)
41 3ec2_A DNA replication protein 97.6 2.3E-05 7.7E-10 69.9 2.8 30 222-251 34-63 (180)
42 1jr3_A DNA polymerase III subu 97.6 4.8E-05 1.6E-09 74.8 4.7 55 194-251 8-63 (373)
43 1n0w_A DNA repair protein RAD5 97.6 0.00041 1.4E-08 63.8 10.7 43 208-250 4-48 (243)
44 3vfd_A Spastin; ATPase, microt 97.5 7.5E-05 2.6E-09 75.1 5.7 25 225-249 147-171 (389)
45 2gno_A DNA polymerase III, gam 97.5 5.6E-05 1.9E-09 74.4 4.4 47 216-262 8-57 (305)
46 3pfi_A Holliday junction ATP-d 97.5 7.6E-05 2.6E-09 72.9 5.2 53 194-249 21-78 (338)
47 3b9p_A CG5977-PA, isoform A; A 97.5 5.4E-05 1.8E-09 72.6 3.8 26 225-250 53-78 (297)
48 3t15_A Ribulose bisphosphate c 97.5 5.1E-05 1.7E-09 73.8 3.2 24 227-250 37-60 (293)
49 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00012 4.2E-09 73.0 6.0 42 208-249 104-146 (331)
50 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00014 4.7E-09 66.2 5.6 57 208-265 3-61 (235)
51 2qby_B CDC6 homolog 3, cell di 97.4 0.00047 1.6E-08 67.9 9.9 62 218-279 37-105 (384)
52 2ehv_A Hypothetical protein PH 97.4 0.00014 4.8E-09 67.2 5.6 45 207-251 9-55 (251)
53 1hqc_A RUVB; extended AAA-ATPa 97.4 0.00013 4.3E-09 70.6 4.8 56 195-250 5-62 (324)
54 3d8b_A Fidgetin-like protein 1 97.4 0.00011 3.8E-09 73.3 4.5 27 224-250 115-141 (357)
55 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00019 6.5E-09 67.0 5.6 26 225-250 38-63 (262)
56 1v5w_A DMC1, meiotic recombina 97.3 0.00063 2.2E-08 67.7 9.6 57 207-263 101-164 (343)
57 4b4t_J 26S protease regulatory 97.3 0.00014 4.7E-09 74.6 4.6 25 227-251 183-207 (405)
58 3eie_A Vacuolar protein sortin 97.3 0.00015 5E-09 71.1 4.7 25 226-250 51-75 (322)
59 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00016 5.4E-09 71.3 4.9 25 226-250 45-69 (322)
60 2z43_A DNA repair and recombin 97.3 0.0006 2E-08 67.1 9.0 58 207-264 86-150 (324)
61 1w5s_A Origin recognition comp 97.3 0.00077 2.6E-08 66.8 9.5 98 224-342 48-152 (412)
62 1fnn_A CDC6P, cell division co 97.3 0.0011 3.7E-08 65.1 10.5 96 224-340 40-137 (389)
63 4b4t_L 26S protease subunit RP 97.3 0.00017 6E-09 74.6 4.6 26 226-251 215-240 (437)
64 2zr9_A Protein RECA, recombina 97.2 0.00072 2.5E-08 67.7 9.0 58 207-265 39-99 (349)
65 4b4t_M 26S protease regulatory 97.2 0.00018 6.3E-09 74.3 4.4 26 226-251 215-240 (434)
66 3hr8_A Protein RECA; alpha and 97.2 0.00076 2.6E-08 67.9 8.9 55 208-263 40-97 (356)
67 4b4t_I 26S protease regulatory 97.2 0.00019 6.6E-09 74.1 4.4 25 227-251 217-241 (437)
68 4b4t_K 26S protease regulatory 97.2 0.00027 9.2E-09 72.9 5.1 24 227-250 207-230 (428)
69 1a5t_A Delta prime, HOLB; zinc 97.2 0.00044 1.5E-08 68.2 6.3 34 218-251 15-49 (334)
70 2cvh_A DNA repair and recombin 97.2 0.0003 1E-08 63.8 4.7 39 210-248 2-42 (220)
71 2dr3_A UPF0273 protein PH0284; 97.2 0.0004 1.4E-08 63.9 5.5 58 208-266 3-62 (247)
72 3n70_A Transport activator; si 97.1 0.00044 1.5E-08 59.7 5.4 26 224-249 22-47 (145)
73 2qp9_X Vacuolar protein sortin 97.1 0.00022 7.4E-09 71.2 3.7 25 226-250 84-108 (355)
74 2i1q_A DNA repair and recombin 97.1 0.0018 6.2E-08 63.2 10.2 44 207-250 77-122 (322)
75 1u94_A RECA protein, recombina 97.1 0.00086 2.9E-08 67.4 8.0 56 207-263 41-99 (356)
76 1d2n_A N-ethylmaleimide-sensit 97.1 0.0014 4.8E-08 62.1 9.0 27 224-250 62-88 (272)
77 4a74_A DNA repair and recombin 97.1 0.00017 6E-09 65.7 2.4 43 208-250 5-49 (231)
78 2a5y_B CED-4; apoptosis; HET: 97.1 0.00085 2.9E-08 70.6 8.0 56 225-280 151-210 (549)
79 4b4t_H 26S protease regulatory 97.1 0.00032 1.1E-08 73.1 4.4 27 225-251 242-268 (467)
80 1xp8_A RECA protein, recombina 97.0 0.001 3.5E-08 67.1 7.6 58 207-265 52-112 (366)
81 1ofh_A ATP-dependent HSL prote 97.0 0.00017 5.8E-09 68.8 1.4 27 224-250 48-74 (310)
82 1sxj_A Activator 1 95 kDa subu 96.9 0.00025 8.5E-09 74.3 1.9 55 193-250 30-101 (516)
83 3lda_A DNA repair protein RAD5 96.9 0.0042 1.4E-07 63.4 10.4 46 206-251 156-203 (400)
84 1sxj_E Activator 1 40 kDa subu 96.8 0.00042 1.4E-08 67.8 2.8 55 193-250 5-60 (354)
85 1qvr_A CLPB protein; coiled co 96.8 0.0011 3.7E-08 73.6 6.3 53 196-251 164-216 (854)
86 3cf0_A Transitional endoplasmi 96.8 0.00027 9.3E-09 68.6 1.0 27 224-250 47-73 (301)
87 3syl_A Protein CBBX; photosynt 96.8 0.0029 9.8E-08 60.6 7.9 28 224-251 65-92 (309)
88 1um8_A ATP-dependent CLP prote 96.8 0.00036 1.2E-08 69.5 1.5 25 226-250 72-96 (376)
89 3cmw_A Protein RECA, recombina 96.7 0.002 6.8E-08 76.4 7.9 115 205-343 10-127 (1706)
90 1pyv_A ATP synthase beta chain 96.7 0.00054 1.8E-08 48.3 1.9 51 1-51 1-54 (54)
91 3cmu_A Protein RECA, recombina 96.7 0.0014 4.8E-08 78.6 6.0 111 206-340 1404-1517(2050)
92 1lv7_A FTSH; alpha/beta domain 96.7 0.0011 3.6E-08 62.3 4.1 24 227-250 46-69 (257)
93 1ixz_A ATP-dependent metallopr 96.6 0.001 3.5E-08 62.2 3.6 26 223-250 48-73 (254)
94 2zan_A Vacuolar protein sortin 96.6 0.00058 2E-08 70.3 1.9 25 226-250 167-191 (444)
95 3hu3_A Transitional endoplasmi 96.6 0.00094 3.2E-08 69.9 3.4 26 224-249 236-261 (489)
96 3m6a_A ATP-dependent protease 96.6 0.00081 2.8E-08 71.1 2.9 34 217-250 99-132 (543)
97 3cf2_A TER ATPase, transitiona 96.6 0.00072 2.5E-08 74.9 2.5 23 227-249 239-261 (806)
98 2ce7_A Cell division protein F 96.5 0.0016 5.4E-08 68.1 4.7 23 228-250 51-73 (476)
99 4fcw_A Chaperone protein CLPB; 96.5 0.0055 1.9E-07 58.5 8.2 25 227-251 48-72 (311)
100 1cr0_A DNA primase/helicase; R 96.5 0.002 6.9E-08 61.9 5.0 48 208-255 15-64 (296)
101 2x8a_A Nuclear valosin-contain 96.5 0.0054 1.8E-07 59.0 8.0 25 223-249 43-67 (274)
102 2c9o_A RUVB-like 1; hexameric 96.5 0.00077 2.6E-08 69.4 1.7 50 201-250 36-87 (456)
103 2qen_A Walker-type ATPase; unk 96.5 0.0031 1.1E-07 60.7 5.8 24 226-249 31-54 (350)
104 1z6t_A APAF-1, apoptotic prote 96.4 0.0044 1.5E-07 64.9 7.4 43 224-266 145-190 (591)
105 3cmu_A Protein RECA, recombina 96.4 0.0053 1.8E-07 73.8 8.7 111 206-340 1058-1171(2050)
106 1iy2_A ATP-dependent metallopr 96.4 0.0019 6.6E-08 61.5 4.1 22 229-250 76-97 (278)
107 1zp6_A Hypothetical protein AT 96.4 0.0015 5.1E-08 58.1 3.1 29 220-248 3-31 (191)
108 3bh0_A DNAB-like replicative h 96.4 0.0024 8.2E-08 62.6 4.8 58 208-266 49-107 (315)
109 3bs4_A Uncharacterized protein 96.4 0.056 1.9E-06 52.0 14.3 68 210-281 3-72 (260)
110 4eun_A Thermoresistant glucoki 96.4 0.0019 6.4E-08 58.5 3.5 41 210-250 13-53 (200)
111 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0051 1.7E-07 67.0 7.6 53 196-251 180-232 (758)
112 1vt4_I APAF-1 related killer D 96.3 0.012 4E-07 67.2 10.4 54 225-279 149-204 (1221)
113 4gp7_A Metallophosphoesterase; 96.3 0.0065 2.2E-07 53.8 6.9 25 221-245 4-28 (171)
114 3hws_A ATP-dependent CLP prote 96.2 0.00045 1.5E-08 68.6 -1.6 26 225-250 50-75 (363)
115 1nlf_A Regulatory protein REPA 96.2 0.0043 1.5E-07 59.2 5.3 46 207-252 10-56 (279)
116 2bjv_A PSP operon transcriptio 96.2 0.005 1.7E-07 57.9 5.4 26 225-250 28-53 (265)
117 2r6a_A DNAB helicase, replicat 96.1 0.0047 1.6E-07 63.5 5.2 56 208-263 184-240 (454)
118 1pzn_A RAD51, DNA repair and r 96.1 0.0022 7.5E-08 64.0 2.4 45 206-250 109-155 (349)
119 3cmw_A Protein RECA, recombina 96.0 0.013 4.3E-07 69.7 8.5 111 207-341 361-474 (1706)
120 2fna_A Conserved hypothetical 95.9 0.018 6E-07 55.3 8.2 24 227-250 31-54 (357)
121 2kjq_A DNAA-related protein; s 95.9 0.0042 1.5E-07 54.3 3.2 27 225-251 35-61 (149)
122 2q6t_A DNAB replication FORK h 95.9 0.0062 2.1E-07 62.4 4.8 56 208-263 181-237 (444)
123 3bgw_A DNAB-like replicative h 95.8 0.0085 2.9E-07 61.8 5.6 62 208-270 178-240 (444)
124 3cf2_A TER ATPase, transitiona 95.7 0.0023 7.8E-08 70.9 1.0 25 226-250 511-535 (806)
125 1ypw_A Transitional endoplasmi 95.7 0.0024 8.3E-08 70.7 1.1 28 223-250 508-535 (806)
126 2w58_A DNAI, primosome compone 95.7 0.011 3.8E-07 52.9 5.3 26 227-252 55-80 (202)
127 1ypw_A Transitional endoplasmi 95.7 0.0045 1.5E-07 68.5 3.1 27 223-249 235-261 (806)
128 3sfz_A APAF-1, apoptotic pepti 95.6 0.0079 2.7E-07 67.6 5.0 43 224-266 145-190 (1249)
129 3tr0_A Guanylate kinase, GMP k 95.6 0.007 2.4E-07 54.1 3.6 27 223-249 4-30 (205)
130 1tf7_A KAIC; homohexamer, hexa 95.6 0.0083 2.8E-07 62.8 4.7 55 207-262 18-75 (525)
131 1znw_A Guanylate kinase, GMP k 95.6 0.0064 2.2E-07 55.3 3.4 28 222-249 16-43 (207)
132 4a1f_A DNAB helicase, replicat 95.6 0.0085 2.9E-07 59.9 4.5 45 208-252 27-72 (338)
133 3vaa_A Shikimate kinase, SK; s 95.6 0.0079 2.7E-07 54.3 3.9 29 222-250 21-49 (199)
134 1q57_A DNA primase/helicase; d 95.5 0.0067 2.3E-07 63.0 3.6 59 208-266 222-282 (503)
135 1z6g_A Guanylate kinase; struc 95.5 0.007 2.4E-07 55.9 3.3 29 221-249 18-46 (218)
136 1y63_A LMAJ004144AAA protein; 95.4 0.01 3.4E-07 53.0 4.0 28 222-249 6-33 (184)
137 2dhr_A FTSH; AAA+ protein, hex 95.4 0.0062 2.1E-07 63.9 3.0 22 229-250 67-88 (499)
138 1g8p_A Magnesium-chelatase 38 95.4 0.004 1.4E-07 60.5 1.3 52 196-250 18-69 (350)
139 1ojl_A Transcriptional regulat 95.4 0.013 4.5E-07 57.0 5.0 26 224-249 23-48 (304)
140 2j41_A Guanylate kinase; GMP, 95.4 0.0094 3.2E-07 53.3 3.7 27 223-249 3-29 (207)
141 1r6b_X CLPA protein; AAA+, N-t 95.4 0.075 2.6E-06 57.8 11.4 24 227-250 489-512 (758)
142 3c8u_A Fructokinase; YP_612366 95.2 0.01 3.5E-07 54.0 3.4 28 223-250 19-46 (208)
143 3pxg_A Negative regulator of g 95.2 0.007 2.4E-07 62.6 2.5 54 195-251 173-226 (468)
144 1kgd_A CASK, peripheral plasma 95.2 0.011 3.9E-07 52.5 3.5 25 225-249 4-28 (180)
145 1kag_A SKI, shikimate kinase I 95.2 0.011 3.9E-07 51.4 3.4 25 225-249 3-27 (173)
146 2qgz_A Helicase loader, putati 95.1 0.021 7.3E-07 55.7 5.6 27 225-251 151-177 (308)
147 2yvu_A Probable adenylyl-sulfa 95.1 0.026 8.9E-07 50.0 5.6 35 217-251 4-38 (186)
148 1htw_A HI0065; nucleotide-bind 95.1 0.014 4.7E-07 51.8 3.6 30 221-250 28-57 (158)
149 3k1j_A LON protease, ATP-depen 95.1 0.0069 2.4E-07 64.6 1.9 52 194-250 33-84 (604)
150 3cm0_A Adenylate kinase; ATP-b 95.0 0.013 4.3E-07 51.7 3.2 26 225-250 3-28 (186)
151 2wwf_A Thymidilate kinase, put 95.0 0.027 9.1E-07 50.5 5.4 34 224-257 8-41 (212)
152 3tif_A Uncharacterized ABC tra 95.0 0.012 3.9E-07 55.4 3.0 27 221-247 26-52 (235)
153 1knq_A Gluconate kinase; ALFA/ 94.9 0.015 5.1E-07 50.9 3.4 26 224-249 6-31 (175)
154 2eyu_A Twitching motility prot 94.9 0.023 8E-07 54.3 5.0 35 216-251 16-50 (261)
155 1lvg_A Guanylate kinase, GMP k 94.9 0.014 4.7E-07 53.0 3.2 26 225-250 3-28 (198)
156 2cbz_A Multidrug resistance-as 94.9 0.013 4.4E-07 55.2 3.0 28 221-248 26-53 (237)
157 1g5t_A COB(I)alamin adenosyltr 94.9 0.089 3E-06 48.6 8.6 119 226-355 28-152 (196)
158 3uie_A Adenylyl-sulfate kinase 94.9 0.027 9.2E-07 50.7 5.1 29 223-251 22-50 (200)
159 1nn5_A Similar to deoxythymidy 94.8 0.031 1.1E-06 50.1 5.3 29 224-252 7-35 (215)
160 2v9p_A Replication protein E1; 94.8 0.015 5.1E-07 57.2 3.4 31 220-250 120-150 (305)
161 3iij_A Coilin-interacting nucl 94.8 0.019 6.7E-07 50.5 3.8 27 224-250 9-35 (180)
162 3lnc_A Guanylate kinase, GMP k 94.7 0.012 4E-07 54.3 2.4 28 222-249 23-51 (231)
163 2pcj_A ABC transporter, lipopr 94.7 0.012 4E-07 54.9 2.4 27 221-247 25-51 (224)
164 1b0u_A Histidine permease; ABC 94.7 0.014 4.8E-07 55.8 3.0 28 221-248 27-54 (262)
165 1ye8_A Protein THEP1, hypothet 94.7 0.016 5.5E-07 52.1 3.1 23 228-250 2-24 (178)
166 1vma_A Cell division protein F 94.7 0.13 4.3E-06 50.5 9.8 30 223-252 101-130 (306)
167 3trf_A Shikimate kinase, SK; a 94.7 0.02 6.8E-07 50.5 3.6 25 226-250 5-29 (185)
168 2zu0_C Probable ATP-dependent 94.7 0.018 6E-07 55.3 3.5 28 221-248 41-68 (267)
169 3asz_A Uridine kinase; cytidin 94.7 0.017 5.7E-07 52.1 3.1 28 223-250 3-30 (211)
170 2d2e_A SUFC protein; ABC-ATPas 94.6 0.017 5.8E-07 54.7 3.2 28 221-248 24-51 (250)
171 1kht_A Adenylate kinase; phosp 94.6 0.022 7.5E-07 50.0 3.7 25 226-250 3-27 (192)
172 2ff7_A Alpha-hemolysin translo 94.6 0.014 4.9E-07 55.2 2.7 28 221-248 30-57 (247)
173 1pui_A ENGB, probable GTP-bind 94.6 0.011 3.6E-07 52.9 1.6 33 215-248 16-48 (210)
174 2qor_A Guanylate kinase; phosp 94.6 0.022 7.5E-07 51.5 3.7 27 223-249 9-35 (204)
175 2olj_A Amino acid ABC transpor 94.6 0.016 5.5E-07 55.6 3.0 27 221-247 45-71 (263)
176 1zuh_A Shikimate kinase; alpha 94.6 0.021 7.3E-07 49.6 3.5 25 226-250 7-31 (168)
177 1qhx_A CPT, protein (chloramph 94.6 0.023 7.9E-07 49.6 3.7 24 226-249 3-26 (178)
178 2jeo_A Uridine-cytidine kinase 94.6 0.019 6.6E-07 53.6 3.4 30 221-250 20-49 (245)
179 1g6h_A High-affinity branched- 94.5 0.015 5.2E-07 55.3 2.7 27 221-247 28-54 (257)
180 2bdt_A BH3686; alpha-beta prot 94.5 0.018 6.1E-07 51.1 2.9 23 226-248 2-24 (189)
181 1mv5_A LMRA, multidrug resista 94.5 0.016 5.6E-07 54.5 2.8 28 221-248 23-50 (243)
182 1sgw_A Putative ABC transporte 94.5 0.015 5.3E-07 54.0 2.5 28 221-248 30-57 (214)
183 4g1u_C Hemin import ATP-bindin 94.5 0.016 5.4E-07 55.7 2.6 33 215-247 25-58 (266)
184 3kb2_A SPBC2 prophage-derived 94.5 0.021 7.3E-07 49.2 3.2 23 228-250 3-25 (173)
185 2pze_A Cystic fibrosis transme 94.5 0.017 5.6E-07 54.1 2.7 28 221-248 29-56 (229)
186 1vpl_A ABC transporter, ATP-bi 94.4 0.018 6.1E-07 55.0 3.0 27 221-247 36-62 (256)
187 2ghi_A Transport protein; mult 94.4 0.018 6.2E-07 55.0 3.0 28 221-248 41-68 (260)
188 1ji0_A ABC transporter; ATP bi 94.4 0.017 5.7E-07 54.4 2.7 27 221-247 27-53 (240)
189 1tue_A Replication protein E1; 94.4 0.018 6.1E-07 54.0 2.8 26 225-250 57-82 (212)
190 2ixe_A Antigen peptide transpo 94.4 0.018 6.3E-07 55.3 3.0 28 221-248 40-67 (271)
191 3gfo_A Cobalt import ATP-bindi 94.4 0.017 5.7E-07 55.9 2.7 27 221-247 29-55 (275)
192 2ihy_A ABC transporter, ATP-bi 94.4 0.017 5.7E-07 55.9 2.7 28 221-248 42-69 (279)
193 3tau_A Guanylate kinase, GMP k 94.4 0.023 8E-07 51.7 3.5 26 224-249 6-31 (208)
194 3e70_C DPA, signal recognition 94.4 0.24 8.1E-06 49.0 11.1 32 222-253 125-156 (328)
195 3fvq_A Fe(3+) IONS import ATP- 94.4 0.02 6.9E-07 57.6 3.2 33 215-247 18-51 (359)
196 2yyz_A Sugar ABC transporter, 94.4 0.022 7.5E-07 57.3 3.5 29 219-247 22-50 (359)
197 3ney_A 55 kDa erythrocyte memb 94.4 0.028 9.5E-07 51.9 3.9 29 221-249 14-42 (197)
198 3pxi_A Negative regulator of g 94.4 0.035 1.2E-06 60.6 5.4 23 228-250 523-545 (758)
199 2it1_A 362AA long hypothetical 94.3 0.022 7.6E-07 57.3 3.5 28 220-247 23-50 (362)
200 2qt1_A Nicotinamide riboside k 94.3 0.022 7.6E-07 51.3 3.2 27 222-248 17-43 (207)
201 1cke_A CK, MSSA, protein (cyti 94.3 0.026 8.8E-07 51.3 3.6 25 226-250 5-29 (227)
202 1v43_A Sugar-binding transport 94.3 0.023 7.8E-07 57.4 3.5 28 220-247 31-58 (372)
203 2yz2_A Putative ABC transporte 94.3 0.02 7E-07 54.7 3.0 27 221-247 28-54 (266)
204 3a00_A Guanylate kinase, GMP k 94.3 0.023 7.7E-07 50.7 3.1 24 226-249 1-24 (186)
205 1z47_A CYSA, putative ABC-tran 94.3 0.021 7.3E-07 57.3 3.2 28 220-247 35-62 (355)
206 2bbw_A Adenylate kinase 4, AK4 94.3 0.024 8.1E-07 52.8 3.4 26 225-250 26-51 (246)
207 2plr_A DTMP kinase, probable t 94.3 0.028 9.7E-07 50.1 3.7 27 225-251 3-29 (213)
208 2i3b_A HCR-ntpase, human cance 94.3 0.024 8.2E-07 51.6 3.3 26 226-251 1-26 (189)
209 2z0h_A DTMP kinase, thymidylat 94.3 0.084 2.9E-06 46.5 6.8 23 228-250 2-24 (197)
210 3rlf_A Maltose/maltodextrin im 94.2 0.024 8.3E-07 57.5 3.5 33 215-247 17-50 (381)
211 1tf7_A KAIC; homohexamer, hexa 94.2 0.035 1.2E-06 58.0 4.8 55 207-262 260-316 (525)
212 2nq2_C Hypothetical ABC transp 94.2 0.02 6.8E-07 54.5 2.6 28 221-248 26-53 (253)
213 2qm8_A GTPase/ATPase; G protei 94.1 0.057 1.9E-06 53.4 5.9 44 216-259 44-88 (337)
214 1aky_A Adenylate kinase; ATP:A 94.1 0.033 1.1E-06 50.8 3.9 27 224-250 2-28 (220)
215 2qi9_C Vitamin B12 import ATP- 94.1 0.022 7.4E-07 54.2 2.7 28 221-248 21-48 (249)
216 2r44_A Uncharacterized protein 94.1 0.019 6.6E-07 55.6 2.4 53 193-250 18-70 (331)
217 1rz3_A Hypothetical protein rb 94.1 0.056 1.9E-06 48.8 5.3 29 222-250 18-46 (201)
218 3fb4_A Adenylate kinase; psych 94.1 0.031 1.1E-06 50.5 3.6 23 228-250 2-24 (216)
219 1zd8_A GTP:AMP phosphotransfer 94.1 0.028 9.6E-07 51.6 3.3 26 224-249 5-30 (227)
220 3d31_A Sulfate/molybdate ABC t 94.0 0.019 6.6E-07 57.4 2.3 27 221-247 21-47 (348)
221 2r62_A Cell division protease 94.0 0.023 7.9E-07 53.2 2.7 24 227-250 45-68 (268)
222 3dl0_A Adenylate kinase; phosp 94.0 0.03 1E-06 50.7 3.4 22 228-249 2-23 (216)
223 1tev_A UMP-CMP kinase; ploop, 94.0 0.032 1.1E-06 49.0 3.5 25 226-250 3-27 (196)
224 3b85_A Phosphate starvation-in 94.0 0.024 8.1E-07 52.5 2.7 31 216-249 15-45 (208)
225 2c95_A Adenylate kinase 1; tra 94.0 0.034 1.2E-06 49.1 3.6 27 224-250 7-33 (196)
226 3b9q_A Chloroplast SRP recepto 94.0 0.058 2E-06 52.7 5.6 31 222-252 96-126 (302)
227 1g29_1 MALK, maltose transport 94.0 0.027 9.2E-07 56.9 3.2 28 220-247 23-50 (372)
228 2rhm_A Putative kinase; P-loop 94.0 0.033 1.1E-06 49.0 3.5 26 225-250 4-29 (193)
229 3pxi_A Negative regulator of g 93.9 0.02 6.8E-07 62.5 2.3 53 195-250 173-225 (758)
230 1ly1_A Polynucleotide kinase; 93.9 0.03 1E-06 48.6 3.1 21 228-248 4-24 (181)
231 1rj9_A FTSY, signal recognitio 93.9 0.063 2.1E-06 52.5 5.7 28 224-251 100-127 (304)
232 3lw7_A Adenylate kinase relate 93.9 0.028 9.4E-07 48.1 2.7 19 228-246 3-21 (179)
233 1s96_A Guanylate kinase, GMP k 93.9 0.032 1.1E-06 51.9 3.3 27 223-249 13-39 (219)
234 2v54_A DTMP kinase, thymidylat 93.8 0.036 1.2E-06 49.3 3.5 25 225-249 3-27 (204)
235 3gd7_A Fusion complex of cysti 93.8 0.029 9.9E-07 57.0 3.2 27 221-247 42-68 (390)
236 2cdn_A Adenylate kinase; phosp 93.8 0.04 1.4E-06 49.4 3.7 28 223-250 17-44 (201)
237 2iyv_A Shikimate kinase, SK; t 93.8 0.037 1.3E-06 48.7 3.4 24 227-250 3-26 (184)
238 1via_A Shikimate kinase; struc 93.8 0.037 1.3E-06 48.5 3.4 23 228-250 6-28 (175)
239 3co5_A Putative two-component 93.8 0.017 6E-07 49.5 1.2 25 224-248 25-49 (143)
240 3f9v_A Minichromosome maintena 93.7 0.026 8.9E-07 60.3 2.8 21 228-248 329-349 (595)
241 2pbr_A DTMP kinase, thymidylat 93.7 0.11 3.9E-06 45.4 6.6 23 228-250 2-24 (195)
242 3sr0_A Adenylate kinase; phosp 93.7 0.037 1.3E-06 51.1 3.4 23 228-250 2-24 (206)
243 2bbs_A Cystic fibrosis transme 93.7 0.028 9.5E-07 54.7 2.7 28 221-248 59-86 (290)
244 3be4_A Adenylate kinase; malar 93.7 0.038 1.3E-06 50.5 3.4 27 224-250 3-29 (217)
245 1g41_A Heat shock protein HSLU 93.7 0.028 9.5E-07 58.2 2.7 25 226-250 50-74 (444)
246 3aez_A Pantothenate kinase; tr 93.6 0.036 1.2E-06 54.4 3.4 28 223-250 87-114 (312)
247 2vli_A Antibiotic resistance p 93.6 0.035 1.2E-06 48.5 3.0 25 225-249 4-28 (183)
248 2pjz_A Hypothetical protein ST 93.6 0.031 1.1E-06 53.6 2.9 27 221-248 26-52 (263)
249 2pez_A Bifunctional 3'-phospho 93.6 0.041 1.4E-06 48.4 3.4 26 225-250 4-29 (179)
250 3v9p_A DTMP kinase, thymidylat 93.6 0.6 2E-05 43.7 11.6 58 224-281 23-82 (227)
251 2jaq_A Deoxyguanosine kinase; 93.6 0.044 1.5E-06 48.5 3.6 23 228-250 2-24 (205)
252 2yhs_A FTSY, cell division pro 93.6 0.062 2.1E-06 56.4 5.2 31 221-251 288-318 (503)
253 1nks_A Adenylate kinase; therm 93.5 0.041 1.4E-06 48.1 3.3 24 228-251 3-26 (194)
254 1ukz_A Uridylate kinase; trans 93.5 0.05 1.7E-06 48.6 3.8 26 224-249 13-38 (203)
255 1oxx_K GLCV, glucose, ABC tran 93.5 0.023 7.8E-07 57.0 1.7 27 221-247 26-52 (353)
256 2r8r_A Sensor protein; KDPD, P 93.5 0.08 2.7E-06 50.1 5.3 26 228-253 8-33 (228)
257 1ak2_A Adenylate kinase isoenz 93.5 0.048 1.7E-06 50.3 3.8 27 224-250 14-40 (233)
258 1sq5_A Pantothenate kinase; P- 93.5 0.066 2.3E-06 52.0 4.9 29 222-250 76-104 (308)
259 3t61_A Gluconokinase; PSI-biol 93.5 0.047 1.6E-06 49.0 3.6 25 226-250 18-42 (202)
260 2orw_A Thymidine kinase; TMTK, 93.4 0.076 2.6E-06 47.8 5.0 28 225-252 2-29 (184)
261 3tlx_A Adenylate kinase 2; str 93.4 0.045 1.5E-06 51.2 3.6 27 224-250 27-53 (243)
262 4eaq_A DTMP kinase, thymidylat 93.4 0.083 2.8E-06 49.2 5.3 29 223-251 23-51 (229)
263 1zak_A Adenylate kinase; ATP:A 93.4 0.045 1.5E-06 49.9 3.3 26 225-250 4-29 (222)
264 2bwj_A Adenylate kinase 5; pho 93.3 0.039 1.3E-06 48.8 2.9 26 225-250 11-36 (199)
265 4e22_A Cytidylate kinase; P-lo 93.3 0.045 1.5E-06 51.5 3.4 26 224-249 25-50 (252)
266 2onk_A Molybdate/tungstate ABC 93.3 0.045 1.5E-06 51.7 3.4 27 221-248 20-46 (240)
267 4edh_A DTMP kinase, thymidylat 93.3 0.69 2.4E-05 42.6 11.5 54 225-280 5-58 (213)
268 3tui_C Methionine import ATP-b 93.3 0.044 1.5E-06 55.3 3.5 33 215-247 42-75 (366)
269 2p5t_B PEZT; postsegregational 93.3 0.034 1.2E-06 52.3 2.5 28 222-249 28-55 (253)
270 1j8m_F SRP54, signal recogniti 93.3 0.81 2.8E-05 44.4 12.3 30 224-253 96-125 (297)
271 1t9h_A YLOQ, probable GTPase E 93.2 0.02 6.9E-07 56.4 0.8 32 217-248 164-195 (307)
272 2og2_A Putative signal recogni 93.2 0.082 2.8E-06 53.1 5.3 30 222-251 153-182 (359)
273 2yv5_A YJEQ protein; hydrolase 93.2 0.037 1.3E-06 53.8 2.6 31 217-247 156-186 (302)
274 3nwj_A ATSK2; P loop, shikimat 93.2 0.05 1.7E-06 51.8 3.4 25 226-250 48-72 (250)
275 4akg_A Glutathione S-transfera 93.1 0.089 3E-06 65.1 6.2 26 224-249 1265-1290(2695)
276 2if2_A Dephospho-COA kinase; a 93.0 0.047 1.6E-06 48.8 2.9 21 228-248 3-23 (204)
277 3dm5_A SRP54, signal recogniti 93.0 0.43 1.5E-05 49.2 10.4 30 224-253 98-127 (443)
278 2ewv_A Twitching motility prot 92.9 0.085 2.9E-06 52.9 4.8 29 223-251 133-161 (372)
279 3nh6_A ATP-binding cassette SU 92.9 0.038 1.3E-06 54.3 2.2 28 221-248 75-102 (306)
280 1gvn_B Zeta; postsegregational 92.9 0.061 2.1E-06 51.9 3.6 28 222-249 29-56 (287)
281 1e4v_A Adenylate kinase; trans 92.8 0.06 2E-06 48.9 3.3 23 228-250 2-24 (214)
282 1lw7_A Transcriptional regulat 92.8 0.048 1.6E-06 54.1 2.9 27 223-249 165-193 (365)
283 1jjv_A Dephospho-COA kinase; P 92.8 0.056 1.9E-06 48.5 3.1 21 228-248 4-24 (206)
284 1e6c_A Shikimate kinase; phosp 92.8 0.064 2.2E-06 46.4 3.4 24 227-250 3-26 (173)
285 3umf_A Adenylate kinase; rossm 92.8 0.072 2.5E-06 49.7 3.8 27 224-250 27-53 (217)
286 1ls1_A Signal recognition part 92.8 0.93 3.2E-05 43.8 11.9 29 225-253 97-125 (295)
287 2pt5_A Shikimate kinase, SK; a 92.7 0.068 2.3E-06 46.1 3.4 23 228-250 2-24 (168)
288 1svm_A Large T antigen; AAA+ f 92.7 0.067 2.3E-06 54.1 3.7 29 221-249 164-192 (377)
289 1m7g_A Adenylylsulfate kinase; 92.7 0.082 2.8E-06 47.9 4.0 29 222-250 21-49 (211)
290 1qvr_A CLPB protein; coiled co 92.6 0.16 5.5E-06 56.2 7.0 24 227-250 589-612 (854)
291 1qf9_A UMP/CMP kinase, protein 92.5 0.071 2.4E-06 46.6 3.3 25 226-250 6-30 (194)
292 2npi_A Protein CLP1; CLP1-PCF1 92.5 0.059 2E-06 55.8 3.2 30 221-250 133-162 (460)
293 2ze6_A Isopentenyl transferase 92.5 0.066 2.3E-06 50.5 3.2 23 228-250 3-25 (253)
294 2gj8_A MNME, tRNA modification 92.4 0.064 2.2E-06 46.8 2.9 24 225-248 3-26 (172)
295 3nbx_X ATPase RAVA; AAA+ ATPas 92.4 0.046 1.6E-06 57.3 2.1 26 224-249 39-64 (500)
296 1yqt_A RNAse L inhibitor; ATP- 92.3 0.08 2.7E-06 55.8 3.9 32 216-247 37-68 (538)
297 3thx_A DNA mismatch repair pro 92.3 0.23 7.8E-06 55.9 7.8 32 218-249 654-685 (934)
298 2f9l_A RAB11B, member RAS onco 92.3 0.077 2.6E-06 47.1 3.3 23 227-249 6-28 (199)
299 1u0l_A Probable GTPase ENGC; p 92.3 0.049 1.7E-06 52.8 2.1 31 217-247 160-190 (301)
300 3upu_A ATP-dependent DNA helic 92.3 0.08 2.7E-06 54.2 3.8 26 228-253 47-72 (459)
301 2px0_A Flagellar biosynthesis 92.2 0.25 8.6E-06 47.9 7.0 28 224-251 103-130 (296)
302 1uf9_A TT1252 protein; P-loop, 92.1 0.083 2.8E-06 46.8 3.2 25 224-248 6-30 (203)
303 2rcn_A Probable GTPase ENGC; Y 92.1 0.055 1.9E-06 54.4 2.2 32 217-248 206-237 (358)
304 1oix_A RAS-related protein RAB 92.0 0.078 2.7E-06 47.1 2.9 23 227-249 30-52 (191)
305 3jvv_A Twitching mobility prot 92.0 0.18 6E-06 50.5 5.8 29 223-251 120-148 (356)
306 4b3f_X DNA-binding protein smu 91.9 0.14 4.7E-06 54.9 5.2 49 228-279 207-255 (646)
307 2ga8_A Hypothetical 39.9 kDa p 91.9 0.094 3.2E-06 52.8 3.6 35 219-253 17-51 (359)
308 1u0j_A DNA replication protein 91.9 0.1 3.6E-06 50.4 3.8 23 227-249 105-127 (267)
309 3a4m_A L-seryl-tRNA(SEC) kinas 91.8 0.098 3.4E-06 49.3 3.6 26 225-250 3-28 (260)
310 2xb4_A Adenylate kinase; ATP-b 91.8 0.097 3.3E-06 48.1 3.4 23 228-250 2-24 (223)
311 2wji_A Ferrous iron transport 91.7 0.097 3.3E-06 45.0 3.1 22 227-248 4-25 (165)
312 1q3t_A Cytidylate kinase; nucl 91.7 0.11 3.8E-06 48.0 3.7 26 224-249 14-39 (236)
313 1ex7_A Guanylate kinase; subst 91.7 0.099 3.4E-06 47.6 3.2 21 229-249 4-24 (186)
314 1odf_A YGR205W, hypothetical 3 91.6 0.1 3.5E-06 50.6 3.5 29 223-251 28-56 (290)
315 2www_A Methylmalonic aciduria 91.6 0.19 6.7E-06 49.7 5.6 25 226-250 74-98 (349)
316 1r8s_A ADP-ribosylation factor 91.6 0.12 4E-06 43.7 3.4 22 228-249 2-23 (164)
317 3j16_B RLI1P; ribosome recycli 91.6 0.11 3.7E-06 55.7 3.9 31 217-247 94-124 (608)
318 1kao_A RAP2A; GTP-binding prot 91.5 0.11 3.8E-06 43.5 3.2 23 227-249 4-26 (167)
319 2zej_A Dardarin, leucine-rich 91.5 0.085 2.9E-06 46.3 2.6 21 228-248 4-24 (184)
320 1z2a_A RAS-related protein RAB 91.5 0.11 3.9E-06 43.8 3.2 23 227-249 6-28 (168)
321 2dyk_A GTP-binding protein; GT 91.5 0.11 3.8E-06 43.5 3.2 23 227-249 2-24 (161)
322 2p67_A LAO/AO transport system 91.5 0.22 7.5E-06 49.1 5.8 30 222-251 52-81 (341)
323 1zu4_A FTSY; GTPase, signal re 91.4 0.23 8E-06 48.8 5.8 31 222-252 101-131 (320)
324 3kl4_A SRP54, signal recogniti 91.4 0.5 1.7E-05 48.6 8.5 30 224-253 95-124 (433)
325 2nzj_A GTP-binding protein REM 91.4 0.11 3.7E-06 44.3 3.0 22 227-248 5-26 (175)
326 2b8t_A Thymidine kinase; deoxy 91.3 0.22 7.6E-06 46.6 5.3 30 224-253 10-39 (223)
327 2ce2_X GTPase HRAS; signaling 91.3 0.11 3.8E-06 43.4 3.0 22 228-249 5-26 (166)
328 2gza_A Type IV secretion syste 91.2 0.077 2.6E-06 53.0 2.2 29 221-249 170-198 (361)
329 1ek0_A Protein (GTP-binding pr 91.2 0.1 3.6E-06 44.0 2.7 22 228-249 5-26 (170)
330 3gmt_A Adenylate kinase; ssgci 91.1 0.13 4.4E-06 48.6 3.5 25 226-250 8-32 (230)
331 1u8z_A RAS-related protein RAL 91.1 0.13 4.4E-06 43.2 3.2 23 227-249 5-27 (168)
332 1m2o_B GTP-binding protein SAR 91.1 0.12 3.9E-06 45.8 3.0 26 224-249 21-46 (190)
333 2vp4_A Deoxynucleoside kinase; 91.1 0.079 2.7E-06 48.9 2.0 27 222-248 16-42 (230)
334 3bk7_A ABC transporter ATP-bin 91.0 0.11 3.9E-06 55.5 3.4 32 216-247 107-138 (607)
335 3r20_A Cytidylate kinase; stru 91.0 0.14 4.7E-06 48.4 3.6 25 226-250 9-33 (233)
336 1z08_A RAS-related protein RAB 91.0 0.11 3.7E-06 44.1 2.6 23 227-249 7-29 (170)
337 1c1y_A RAS-related protein RAP 90.9 0.14 4.7E-06 43.2 3.2 22 228-249 5-26 (167)
338 2hf9_A Probable hydrogenase ni 90.9 0.1 3.5E-06 47.1 2.6 29 222-250 34-62 (226)
339 2wjg_A FEOB, ferrous iron tran 90.8 0.13 4.4E-06 44.6 3.1 22 227-248 8-29 (188)
340 3b5x_A Lipid A export ATP-bind 90.8 0.12 4.1E-06 54.7 3.3 29 221-249 364-392 (582)
341 3q85_A GTP-binding protein REM 90.8 0.14 4.7E-06 43.5 3.1 20 228-247 4-23 (169)
342 1yqt_A RNAse L inhibitor; ATP- 90.7 0.12 4.1E-06 54.5 3.2 26 223-248 309-334 (538)
343 1r2q_A RAS-related protein RAB 90.7 0.15 5E-06 43.0 3.2 23 227-249 7-29 (170)
344 1wms_A RAB-9, RAB9, RAS-relate 90.6 0.12 4.2E-06 44.1 2.7 23 227-249 8-30 (177)
345 1qde_A EIF4A, translation init 90.6 0.91 3.1E-05 40.7 8.7 22 224-245 49-70 (224)
346 1xjc_A MOBB protein homolog; s 90.6 0.29 9.9E-06 43.9 5.2 26 227-252 5-30 (169)
347 1z0j_A RAB-22, RAS-related pro 90.6 0.15 5.2E-06 43.0 3.2 23 227-249 7-29 (170)
348 1gtv_A TMK, thymidylate kinase 90.6 0.071 2.4E-06 47.8 1.1 24 228-251 2-25 (214)
349 1p9r_A General secretion pathw 90.6 0.21 7E-06 51.1 4.7 34 216-250 158-191 (418)
350 1g16_A RAS-related protein SEC 90.6 0.14 4.8E-06 43.2 3.0 21 228-248 5-25 (170)
351 2erx_A GTP-binding protein DI- 90.6 0.15 5E-06 43.1 3.0 22 227-248 4-25 (172)
352 1ky3_A GTP-binding protein YPT 90.5 0.15 5.3E-06 43.5 3.2 23 227-249 9-31 (182)
353 3bc1_A RAS-related protein RAB 90.5 0.16 5.3E-06 43.9 3.2 23 227-249 12-34 (195)
354 1uj2_A Uridine-cytidine kinase 90.5 0.16 5.3E-06 47.5 3.4 24 226-249 22-45 (252)
355 3q72_A GTP-binding protein RAD 90.4 0.13 4.4E-06 43.5 2.6 21 227-247 3-23 (166)
356 3ake_A Cytidylate kinase; CMP 90.4 0.18 6E-06 44.8 3.6 23 228-250 4-26 (208)
357 3b60_A Lipid A export ATP-bind 90.4 0.13 4.3E-06 54.5 3.0 28 221-248 364-391 (582)
358 2qmh_A HPR kinase/phosphorylas 90.4 0.15 5.2E-06 47.4 3.2 25 225-249 33-57 (205)
359 1vht_A Dephospho-COA kinase; s 90.3 0.16 5.6E-06 45.9 3.4 23 226-248 4-26 (218)
360 2ffh_A Protein (FFH); SRP54, s 90.3 2.4 8E-05 43.4 12.4 29 225-253 97-125 (425)
361 3ld9_A DTMP kinase, thymidylat 90.3 1.6 5.4E-05 40.7 10.2 56 223-280 18-75 (223)
362 2yl4_A ATP-binding cassette SU 90.3 0.13 4.5E-06 54.5 3.1 28 221-248 365-392 (595)
363 2ged_A SR-beta, signal recogni 90.3 0.16 5.6E-06 44.3 3.2 26 224-249 46-71 (193)
364 2hxs_A RAB-26, RAS-related pro 90.3 0.13 4.5E-06 44.0 2.6 23 227-249 7-29 (178)
365 1mh1_A RAC1; GTP-binding, GTPa 90.2 0.14 4.9E-06 44.0 2.7 23 227-249 6-28 (186)
366 1upt_A ARL1, ADP-ribosylation 90.1 0.21 7.1E-06 42.3 3.7 26 224-249 5-30 (171)
367 3ihw_A Centg3; RAS, centaurin, 90.1 0.17 5.8E-06 44.5 3.2 23 227-249 21-43 (184)
368 2gxq_A Heat resistant RNA depe 90.1 2.4 8.1E-05 37.3 10.9 25 225-249 37-61 (207)
369 3con_A GTPase NRAS; structural 90.1 0.17 6E-06 44.0 3.2 23 227-249 22-44 (190)
370 3e1s_A Exodeoxyribonuclease V, 90.1 0.3 1E-05 51.8 5.7 28 225-252 203-230 (574)
371 4dsu_A GTPase KRAS, isoform 2B 90.1 0.18 6E-06 43.5 3.2 22 228-249 6-27 (189)
372 1z0f_A RAB14, member RAS oncog 90.0 0.18 6.2E-06 42.9 3.2 23 227-249 16-38 (179)
373 1m7b_A RND3/RHOE small GTP-bin 90.0 0.14 4.6E-06 44.7 2.4 23 227-249 8-30 (184)
374 2fn4_A P23, RAS-related protei 90.0 0.16 5.6E-06 43.3 2.9 25 225-249 8-32 (181)
375 2grj_A Dephospho-COA kinase; T 90.0 0.19 6.4E-06 45.7 3.4 24 226-249 12-35 (192)
376 3ozx_A RNAse L inhibitor; ATP 89.9 0.13 4.5E-06 54.3 2.7 27 222-248 290-316 (538)
377 2wsm_A Hydrogenase expression/ 89.9 0.12 4.1E-06 46.5 2.1 31 220-250 24-54 (221)
378 2lkc_A Translation initiation 89.9 0.2 6.7E-06 42.9 3.4 25 224-248 6-30 (178)
379 3dz8_A RAS-related protein RAB 89.9 0.18 6E-06 44.3 3.1 23 227-249 24-46 (191)
380 3kkq_A RAS-related protein M-R 89.9 0.15 5.3E-06 43.9 2.7 24 226-249 18-41 (183)
381 3c5c_A RAS-like protein 12; GD 89.9 0.15 5.2E-06 44.8 2.7 23 227-249 22-44 (187)
382 2a9k_A RAS-related protein RAL 89.9 0.19 6.4E-06 43.2 3.2 23 227-249 19-41 (187)
383 2oil_A CATX-8, RAS-related pro 89.8 0.19 6.5E-06 44.0 3.3 23 227-249 26-48 (193)
384 3clv_A RAB5 protein, putative; 89.8 0.19 6.4E-06 43.5 3.2 25 225-249 6-30 (208)
385 1nrj_B SR-beta, signal recogni 89.8 0.18 6.3E-06 45.0 3.2 25 225-249 11-35 (218)
386 2iwr_A Centaurin gamma 1; ANK 89.8 0.11 3.9E-06 44.6 1.8 23 227-249 8-30 (178)
387 3bk7_A ABC transporter ATP-bin 89.8 0.16 5.4E-06 54.4 3.2 26 223-248 379-404 (607)
388 2y8e_A RAB-protein 6, GH09086P 89.7 0.18 6.2E-06 42.9 3.0 23 227-249 15-37 (179)
389 1np6_A Molybdopterin-guanine d 89.7 0.35 1.2E-05 43.3 5.0 25 227-251 7-31 (174)
390 2efe_B Small GTP-binding prote 89.7 0.2 6.8E-06 43.0 3.2 23 227-249 13-35 (181)
391 2j37_W Signal recognition part 89.6 2 6.8E-05 45.0 11.3 29 224-252 99-127 (504)
392 2pt7_A CAG-ALFA; ATPase, prote 89.6 0.083 2.8E-06 52.1 0.8 28 222-249 167-194 (330)
393 2qag_B Septin-6, protein NEDD5 89.6 0.17 6E-06 52.0 3.2 28 221-248 35-64 (427)
394 3bwd_D RAC-like GTP-binding pr 89.6 0.2 7E-06 42.9 3.2 25 225-249 7-31 (182)
395 3tw8_B RAS-related protein RAB 89.6 0.18 6.2E-06 43.0 2.9 22 227-248 10-31 (181)
396 3qf4_B Uncharacterized ABC tra 89.5 0.18 6.1E-06 53.7 3.3 28 221-248 376-403 (598)
397 2bme_A RAB4A, RAS-related prot 89.5 0.19 6.5E-06 43.4 3.0 23 227-249 11-33 (186)
398 3sop_A Neuronal-specific septi 89.5 0.17 5.9E-06 48.4 2.9 22 228-249 4-25 (270)
399 2g6b_A RAS-related protein RAB 89.4 0.21 7.3E-06 42.7 3.2 23 227-249 11-33 (180)
400 2cxx_A Probable GTP-binding pr 89.4 0.17 6E-06 43.7 2.7 22 228-249 3-24 (190)
401 3tkl_A RAS-related protein RAB 89.4 0.21 7.3E-06 43.4 3.2 23 227-249 17-39 (196)
402 2atv_A RERG, RAS-like estrogen 89.4 0.22 7.7E-06 43.8 3.4 37 212-249 15-51 (196)
403 3p32_A Probable GTPase RV1496/ 89.3 0.44 1.5E-05 47.1 5.8 36 217-252 69-105 (355)
404 3tqc_A Pantothenate kinase; bi 89.3 0.19 6.4E-06 49.7 3.1 23 228-250 94-116 (321)
405 2bov_A RAla, RAS-related prote 89.3 0.18 6.2E-06 44.3 2.7 23 227-249 15-37 (206)
406 3t5g_A GTP-binding protein RHE 89.2 0.17 5.8E-06 43.6 2.4 24 226-249 6-29 (181)
407 3kta_A Chromosome segregation 89.2 0.23 7.7E-06 43.5 3.3 27 221-248 22-48 (182)
408 2iw3_A Elongation factor 3A; a 89.2 0.18 6.3E-06 56.9 3.2 28 221-248 456-483 (986)
409 4a82_A Cystic fibrosis transme 89.1 0.12 4.2E-06 54.6 1.8 27 221-247 362-388 (578)
410 2cjw_A GTP-binding protein GEM 89.1 0.24 8.2E-06 43.9 3.4 22 227-248 7-28 (192)
411 2gf9_A RAS-related protein RAB 89.1 0.23 7.8E-06 43.3 3.2 23 227-249 23-45 (189)
412 3t1o_A Gliding protein MGLA; G 89.1 0.23 8E-06 43.0 3.2 21 227-247 15-35 (198)
413 1ltq_A Polynucleotide kinase; 89.1 0.2 7E-06 47.5 3.1 21 228-248 4-24 (301)
414 2pl3_A Probable ATP-dependent 89.0 1.3 4.3E-05 40.3 8.3 24 224-247 60-83 (236)
415 1moz_A ARL1, ADP-ribosylation 89.0 0.14 4.9E-06 44.1 1.8 24 224-247 16-39 (183)
416 3lv8_A DTMP kinase, thymidylat 89.0 0.66 2.3E-05 43.6 6.5 54 225-279 26-79 (236)
417 4tmk_A Protein (thymidylate ki 89.0 0.72 2.4E-05 42.6 6.7 53 225-279 2-55 (213)
418 1svi_A GTP-binding protein YSX 89.0 0.24 8.1E-06 43.2 3.2 26 224-249 21-46 (195)
419 1ksh_A ARF-like protein 2; sma 89.0 0.23 7.7E-06 43.1 3.1 32 217-248 9-40 (186)
420 2xxa_A Signal recognition part 89.0 2.9 9.8E-05 42.8 11.8 30 224-253 98-127 (433)
421 1vg8_A RAS-related protein RAB 88.9 0.24 8.1E-06 43.7 3.2 23 227-249 9-31 (207)
422 1zd9_A ADP-ribosylation factor 88.9 0.24 8.3E-06 43.3 3.2 24 226-249 22-45 (188)
423 3reg_A RHO-like small GTPase; 88.9 0.24 8.4E-06 43.4 3.2 24 226-249 23-46 (194)
424 2f1r_A Molybdopterin-guanine d 88.8 0.12 4.1E-06 46.2 1.2 25 227-251 3-27 (171)
425 2a5j_A RAS-related protein RAB 88.8 0.25 8.5E-06 43.3 3.3 23 227-249 22-44 (191)
426 1x3s_A RAS-related protein RAB 88.8 0.25 8.5E-06 42.9 3.2 23 227-249 16-38 (195)
427 2oap_1 GSPE-2, type II secreti 88.7 0.18 6E-06 53.0 2.6 28 222-249 256-283 (511)
428 1z06_A RAS-related protein RAB 88.7 0.25 8.7E-06 43.1 3.2 23 227-249 21-43 (189)
429 2ocp_A DGK, deoxyguanosine kin 88.6 0.25 8.6E-06 45.6 3.3 25 225-249 1-25 (241)
430 2fh5_B SR-beta, signal recogni 88.5 0.22 7.4E-06 44.4 2.7 24 226-249 7-30 (214)
431 1a7j_A Phosphoribulokinase; tr 88.5 0.38 1.3E-05 46.4 4.6 26 225-250 4-29 (290)
432 2fu5_C RAS-related protein RAB 88.5 0.15 5.3E-06 43.9 1.7 23 227-249 9-31 (183)
433 2fg5_A RAB-22B, RAS-related pr 88.5 0.24 8.1E-06 43.5 2.9 23 227-249 24-46 (192)
434 3dzd_A Transcriptional regulat 88.5 0.57 2E-05 46.7 6.1 43 226-270 152-194 (368)
435 3zvl_A Bifunctional polynucleo 88.5 0.49 1.7E-05 47.9 5.6 25 224-248 256-280 (416)
436 2p5s_A RAS and EF-hand domain 88.5 0.27 9.1E-06 43.5 3.3 25 225-249 27-51 (199)
437 1f6b_A SAR1; gtpases, N-termin 88.4 0.16 5.4E-06 45.3 1.7 25 224-248 23-47 (198)
438 1zbd_A Rabphilin-3A; G protein 88.4 0.26 8.8E-06 43.5 3.1 23 227-249 9-31 (203)
439 1ni3_A YCHF GTPase, YCHF GTP-b 88.4 0.26 9E-06 50.0 3.5 27 222-248 16-42 (392)
440 3qf4_A ABC transporter, ATP-bi 88.4 0.17 5.9E-06 53.7 2.2 28 221-248 364-391 (587)
441 4ag6_A VIRB4 ATPase, type IV s 88.4 0.46 1.6E-05 47.3 5.2 27 225-251 34-60 (392)
442 1fzq_A ADP-ribosylation factor 88.3 0.22 7.6E-06 43.4 2.6 25 224-248 14-38 (181)
443 2h92_A Cytidylate kinase; ross 88.3 0.29 1E-05 44.1 3.5 24 226-249 3-26 (219)
444 3cr8_A Sulfate adenylyltranfer 88.3 0.18 6E-06 53.5 2.2 29 222-250 365-393 (552)
445 3pqc_A Probable GTP-binding pr 88.1 0.29 1E-05 42.3 3.2 25 225-249 22-46 (195)
446 3ozx_A RNAse L inhibitor; ATP 88.1 0.23 8E-06 52.3 3.0 27 222-248 21-47 (538)
447 1gwn_A RHO-related GTP-binding 88.1 0.22 7.4E-06 44.8 2.4 24 226-249 28-51 (205)
448 2o8b_B DNA mismatch repair pro 88.0 1.1 3.9E-05 50.7 8.7 23 226-248 789-811 (1022)
449 2f6r_A COA synthase, bifunctio 88.0 0.26 8.8E-06 47.2 3.0 21 227-247 76-96 (281)
450 2q3h_A RAS homolog gene family 88.0 0.23 7.9E-06 43.7 2.5 26 224-249 18-43 (201)
451 2gf0_A GTP-binding protein DI- 88.0 0.31 1.1E-05 42.5 3.3 26 224-249 6-31 (199)
452 2atx_A Small GTP binding prote 87.9 0.23 7.9E-06 43.4 2.4 23 227-249 19-41 (194)
453 2ew1_A RAS-related protein RAB 87.8 0.28 9.4E-06 44.1 3.0 23 227-249 27-49 (201)
454 3iuy_A Probable ATP-dependent 87.8 0.55 1.9E-05 42.5 5.0 21 225-245 56-76 (228)
455 2o52_A RAS-related protein RAB 87.8 0.21 7.3E-06 44.3 2.2 23 227-249 26-48 (200)
456 4gzl_A RAS-related C3 botulinu 87.8 0.23 8E-06 44.3 2.4 27 223-249 27-53 (204)
457 3cph_A RAS-related protein SEC 87.8 0.31 1.1E-05 43.0 3.2 26 224-249 18-43 (213)
458 4dkx_A RAS-related protein RAB 87.7 0.26 8.8E-06 45.4 2.7 22 228-249 15-36 (216)
459 3crm_A TRNA delta(2)-isopenten 87.7 0.29 9.9E-06 48.5 3.2 23 227-249 6-28 (323)
460 2bcg_Y Protein YP2, GTP-bindin 87.7 0.29 9.8E-06 43.3 3.0 23 227-249 9-31 (206)
461 3oes_A GTPase rhebl1; small GT 87.7 0.27 9.3E-06 43.5 2.8 28 222-249 20-47 (201)
462 3cbq_A GTP-binding protein REM 87.6 0.24 8.2E-06 44.0 2.4 21 227-247 24-44 (195)
463 3hjn_A DTMP kinase, thymidylat 87.6 6.8 0.00023 35.2 12.2 24 229-252 3-26 (197)
464 1zj6_A ADP-ribosylation factor 87.5 0.28 9.7E-06 42.6 2.8 25 224-248 14-38 (187)
465 2f7s_A C25KG, RAS-related prot 87.4 0.31 1.1E-05 43.4 3.1 22 227-248 26-47 (217)
466 2v3c_C SRP54, signal recogniti 87.4 0.46 1.6E-05 48.7 4.6 29 224-252 97-125 (432)
467 3ly5_A ATP-dependent RNA helic 87.4 0.97 3.3E-05 42.3 6.6 23 225-247 90-112 (262)
468 2j0v_A RAC-like GTP-binding pr 87.4 0.26 8.8E-06 43.9 2.4 24 226-249 9-32 (212)
469 3q3j_B RHO-related GTP-binding 87.3 0.28 9.6E-06 44.2 2.7 24 226-249 27-50 (214)
470 4bas_A ADP-ribosylation factor 87.3 0.29 9.7E-06 42.7 2.7 25 224-248 15-39 (199)
471 3k53_A Ferrous iron transport 87.3 0.27 9.4E-06 46.3 2.7 22 227-248 4-25 (271)
472 2h17_A ADP-ribosylation factor 87.3 0.21 7.2E-06 43.3 1.8 25 225-249 20-44 (181)
473 3lxx_A GTPase IMAP family memb 87.3 0.32 1.1E-05 44.7 3.0 24 225-248 28-51 (239)
474 2fv8_A H6, RHO-related GTP-bin 87.2 0.32 1.1E-05 43.3 2.9 23 227-249 26-48 (207)
475 3a8t_A Adenylate isopentenyltr 87.2 0.29 9.9E-06 48.8 2.9 26 224-249 38-63 (339)
476 2hup_A RAS-related protein RAB 87.1 0.27 9.2E-06 43.8 2.4 23 227-249 30-52 (201)
477 2gk6_A Regulator of nonsense t 87.1 0.53 1.8E-05 50.2 5.1 53 226-280 195-247 (624)
478 2gco_A H9, RHO-related GTP-bin 87.0 0.33 1.1E-05 43.0 3.0 23 227-249 26-48 (201)
479 1ega_A Protein (GTP-binding pr 86.9 0.27 9.2E-06 47.6 2.5 25 225-249 7-31 (301)
480 2il1_A RAB12; G-protein, GDP, 86.9 0.33 1.1E-05 42.6 2.9 23 227-249 27-49 (192)
481 3fe2_A Probable ATP-dependent 86.9 2.5 8.4E-05 38.7 9.0 23 225-247 65-87 (242)
482 3ux8_A Excinuclease ABC, A sub 86.9 0.2 6.9E-06 53.9 1.6 27 221-247 343-369 (670)
483 3foz_A TRNA delta(2)-isopenten 86.8 0.42 1.4E-05 47.3 3.7 25 225-249 9-33 (316)
484 3euj_A Chromosome partition pr 86.7 0.37 1.3E-05 50.3 3.5 28 221-249 25-52 (483)
485 3ux8_A Excinuclease ABC, A sub 86.7 0.27 9.2E-06 52.9 2.5 23 221-243 39-61 (670)
486 1tq4_A IIGP1, interferon-induc 86.7 0.22 7.6E-06 50.9 1.8 21 228-248 71-91 (413)
487 2j1l_A RHO-related GTP-binding 86.7 0.27 9.2E-06 44.2 2.2 23 227-249 35-57 (214)
488 2qnr_A Septin-2, protein NEDD5 86.6 0.28 9.6E-06 47.5 2.4 21 228-248 20-40 (301)
489 2b6h_A ADP-ribosylation factor 86.6 0.32 1.1E-05 42.9 2.6 24 224-247 27-50 (192)
490 2g3y_A GTP-binding protein GEM 86.5 0.37 1.3E-05 44.1 3.0 21 227-247 38-58 (211)
491 1xx6_A Thymidine kinase; NESG, 86.5 0.88 3E-05 41.3 5.5 38 223-260 5-42 (191)
492 3d3q_A TRNA delta(2)-isopenten 86.3 0.39 1.3E-05 47.9 3.3 23 228-250 9-31 (340)
493 1vec_A ATP-dependent RNA helic 86.3 4.8 0.00016 35.3 10.2 23 225-247 39-61 (206)
494 2h57_A ADP-ribosylation factor 86.2 0.29 9.9E-06 42.7 2.1 25 225-249 20-44 (190)
495 3cpj_B GTP-binding protein YPT 86.1 0.43 1.5E-05 43.1 3.2 23 227-249 14-36 (223)
496 3tqf_A HPR(Ser) kinase; transf 86.0 0.41 1.4E-05 43.7 3.0 26 224-249 14-39 (181)
497 1wrb_A DJVLGB; RNA helicase, D 85.9 2 6.7E-05 39.5 7.7 23 225-247 59-81 (253)
498 3j16_B RLI1P; ribosome recycli 85.8 0.41 1.4E-05 51.3 3.4 24 225-248 377-400 (608)
499 1hv8_A Putative ATP-dependent 85.8 4.6 0.00016 38.3 10.5 24 227-250 45-68 (367)
500 2yc2_C IFT27, small RAB-relate 85.7 0.19 6.6E-06 44.1 0.6 24 226-249 20-43 (208)
No 1
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=1.7e-88 Score=706.05 Aligned_cols=339 Identities=81% Similarity=1.195 Sum_probs=315.7
Q ss_pred cccCCceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcc
Q 014249 81 FTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (428)
Q Consensus 81 ~~~~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~ 160 (428)
.++..++|+|++|+|++|+|+|...+|.+++.+++...+.++++||++|++++.|++++|++++||++|+.|++||++++
T Consensus 8 ~~~~~~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~ 87 (482)
T 2ck3_D 8 PKAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 87 (482)
T ss_dssp -----CEEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCE
T ss_pred cccCCcceEEEEEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCcce
Confidence 35566789999999999999997557888877766432346899999999999999999999999999999999999999
Q ss_pred ccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChh
Q 014249 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (428)
Q Consensus 161 VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKT 240 (428)
||||+++||||+|++|+|||+++++..+++||+++.+|++++|....++|.||+|+||.|+|++||||++|||++|+|||
T Consensus 88 vpvG~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT 167 (482)
T 2ck3_D 88 IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT 167 (482)
T ss_dssp EECSGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHH
T ss_pred eeccccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChH
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 014249 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (428)
Q Consensus 241 tLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAE 320 (428)
+|+++|++|+++++.++|||++||||++|++||++++.+.+.++... .++|+++|++|+|+||.+|++++|+|+|+||
T Consensus 168 ~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~--~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAE 245 (482)
T 2ck3_D 168 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAE 245 (482)
T ss_dssp HHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSS--SCCCEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhcccccccc--CCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999999999999999987653211 2469999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCch
Q 014249 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPA 400 (428)
Q Consensus 321 yfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi 400 (428)
||||++|+|||||+|||||||+|+||+|+++||+|+++||||++|++|++|||||++.++||||++++|++|+||++|||
T Consensus 246 yfrd~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERag~~~~GSIT~i~tv~v~~dD~tdPi 325 (482)
T 2ck3_D 246 YFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPA 325 (482)
T ss_dssp HHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSCCSSCCEEEEEEEECGGGCTTSHH
T ss_pred HHHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhhcCCCCCceeeeEEEEecCCCCCCcc
Confidence 99997799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCeEEEeehhhhhc
Q 014249 401 PATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 401 ~~~~~~~ld~~ivLsR~la~~ 421 (428)
||++|+|+||||||||+||++
T Consensus 326 ~d~~~~i~dG~ivLsr~La~~ 346 (482)
T 2ck3_D 326 PATTFAHLDATTVLSRAIAEL 346 (482)
T ss_dssp HHHHGGGCSEEEEBCHHHHTT
T ss_pred HHHHHHhcCeEEEEcHHHHhC
Confidence 999999999999999999987
No 2
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=7.4e-89 Score=711.15 Aligned_cols=335 Identities=68% Similarity=1.033 Sum_probs=314.4
Q ss_pred ceeeEEEEECCEEEEEeCC-CCchhhhceEEee-c--cc--eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCc
Q 014249 86 AIGQVCQVIGAVVDVRFDE-GLPPILTALEVVD-H--SV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~-glp~i~~~l~v~~-~--~~--~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l 159 (428)
++|+|++|+|+||+++|.+ .+|.+++++++.. . .. ++++||++|++++.|++++|++++||++|++|++||+++
T Consensus 19 ~~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~ 98 (498)
T 1fx0_B 19 NLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPL 98 (498)
T ss_dssp CCEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSC
T ss_pred CCceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcc
Confidence 4799999999999999885 4788887777642 1 12 589999999999999999999999999999999999999
Q ss_pred cccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCCh
Q 014249 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (428)
Q Consensus 160 ~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GK 239 (428)
+||||+++||||+|++|+|||+++++..+++|||++.+|++++|...+++|.||||+||.|+|++||||++|||++|+||
T Consensus 99 ~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGK 178 (498)
T 1fx0_B 99 SVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGK 178 (498)
T ss_dssp EEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSH
T ss_pred eEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 014249 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (428)
Q Consensus 240 TtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiA 319 (428)
|+|+++|++|++++|.++|||++||||+||++||++++.+.++++.. .-..+|+++|++|||+||.+|++++++|+|+|
T Consensus 179 T~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~-~l~~~rtvvV~~t~d~p~~~R~~~~~~altiA 257 (498)
T 1fx0_B 179 TVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQ-NIAESKVALVYGQMNEPPGARMRVGLTALTMA 257 (498)
T ss_dssp HHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSS-TTCCCCEEEEEECTTSCHHHHTTHHHHHHHTH
T ss_pred hHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccc-cccccceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999998765311 00124999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCc
Q 014249 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 320 Eyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dp 399 (428)
|||||++|+|||||+|||||||+|+||+|+++||+|+++||||++|++|++|||||++.++||||++|+|++|+||++||
T Consensus 258 Eyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~~~~GSIT~i~tV~v~~dD~tdP 337 (498)
T 1fx0_B 258 EYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDP 337 (498)
T ss_dssp HHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSCCTTCEECCEEEEECGGGCSSSH
T ss_pred HHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccCCCCCceeeeEEEEccCCCcCCc
Confidence 99999779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014249 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
|||++|+||||||||||+||++
T Consensus 338 i~d~~~~ilDG~ivLsR~La~~ 359 (498)
T 1fx0_B 338 APATTFAHLDATTVLSRGLAAK 359 (498)
T ss_dssp HHHHHHTTCSEEEEBCSTTTTT
T ss_pred chHHHHHhhCceEEehhhHHhC
Confidence 9999999999999999999987
No 3
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=1.8e-84 Score=677.21 Aligned_cols=323 Identities=26% Similarity=0.406 Sum_probs=297.1
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014249 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
..++|+|++|.|+++.|+ |++++. ..|++.++.+... .+.+++++.|++++|++++||++|+.|++||++++|||
T Consensus 25 ~~~~G~V~~v~g~i~~v~---Gl~~~~-~gElv~~~~~~~g-~v~~l~~d~v~~~~~~~~~gi~~G~~V~~tg~~~~Vpv 99 (513)
T 3oaa_A 25 AHNEGTIVSVSDGVIRIH---GLADCM-QGEMISLPGNRYA-IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPV 99 (513)
T ss_dssp CTTEEEEEEEETTEEEEE---ECTTCB-TTCEEEETTTEEE-EEEEECSSCEEEEESSCCSSCCTTCEEECCSCSSEEEC
T ss_pred ceeEEEEEEEECcEEEEE---CCccCC-cCCEEEECCCCEE-EEEEeeCCEEEEEEeCCccCCCCCCEEEEcCCCCeEee
Confidence 456899999999999998 876553 2233333334444 45567999999999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHH
Q 014249 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa 243 (428)
|++|||||+|++|+|||+++++..++++||+..+|++++|...+++|.||+|+||.|+|++||||++|||++|||||+|+
T Consensus 100 G~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~ 179 (513)
T 3oaa_A 100 GRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALA 179 (513)
T ss_dssp SGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHH
T ss_pred CHHHhccchhhcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecCCCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Q 014249 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (428)
Q Consensus 244 ~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfr 323 (428)
+++|.|+ +....+|||++||||++|+++|+++|.+.+ .++||++|++|+|+||.+|+++||+|+|+|||||
T Consensus 180 l~~I~n~-~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g--------~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfr 250 (513)
T 3oaa_A 180 IDAIINQ-RDSGIKCIYVAIGQKASTISNVVRKLEEHG--------ALANTIVVVATASESAALQYLAPYAGCAMGEYFR 250 (513)
T ss_dssp HHHHHTT-SSSSCEEEEEEESCCHHHHHHHHHHHHHHS--------CSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-ccCCceEEEEEecCChHHHHHHHHHHhhcC--------cccceEEEEECCCCChHHHHHHHHHHHHHHHHHH
Confidence 7777765 334446899999999999999999999887 5679999999999999999999999999999999
Q ss_pred HhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC---------------CCccEeEEEE
Q 014249 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT---------------KKGSITSVQA 388 (428)
Q Consensus 324 d~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~---------------~~GSIT~i~~ 388 (428)
| +|+|||||+||+||||+|+||+|+++||||+++||||++|+.|++|||||++. ++||||++|+
T Consensus 251 d-~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~~GSITal~~ 329 (513)
T 3oaa_A 251 D-RGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPI 329 (513)
T ss_dssp H-TTCEEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSCCEEEEECCE
T ss_pred h-cCCCEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhcccccchhccccccCCCCcceEEEEE
Confidence 9 89999999999999999999999999999999999999999999999999962 4899999999
Q ss_pred EEecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014249 389 IYVPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 389 v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
|++|+||++||||+++++|+||||||||+||++
T Consensus 330 V~~~~dD~s~pIp~~~~si~DGqIvLsr~La~~ 362 (513)
T 3oaa_A 330 IETQAGDVSAFVPTNVISITDGQIFLETNLFNA 362 (513)
T ss_dssp EECGGGCCSSHHHHHHHHHSSEEEEECHHHHTT
T ss_pred EEcCCCCccCcchHhhhccCCeEEEEehhHHhC
Confidence 999999999999999999999999999999986
No 4
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=9.1e-84 Score=673.38 Aligned_cols=320 Identities=25% Similarity=0.401 Sum_probs=297.6
Q ss_pred ceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCCc
Q 014249 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG~ 165 (428)
.+|+|++|.|++++|+ |+|++. ..+++....+. .+++.+++++.|++++|++++||++|+.|++||++++||||+
T Consensus 27 ~~G~V~~v~g~iv~v~---gl~~~~-~ge~~~i~~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~ 101 (502)
T 2qe7_A 27 EVGTVIQVGDGIARVH---GLEKVM-AGELLEFENGV-MGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGE 101 (502)
T ss_dssp CEEEEEEEETTEEEEE---CCTTCB-TTEEEEETTSC-EEEEEEEETTEEEEEECSCCSSCCTTCEEEEEEEESEEECSG
T ss_pred EEEEEEEecCcEEEEE---ECCCCC-CCCEEEECCCC-EEEEEEecCCeEEEEEecCccCCcCCCEEEEeCCcceEEccc
Confidence 5899999999999998 887664 22333332233 467778899999999999999999999999999999999999
Q ss_pred cccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHH
Q 014249 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (428)
Q Consensus 166 ~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ 245 (428)
++||||+|++|+|||+++++..+++|||+..+|++++|...+++|.||+|+||.|+|++||||++|||++|+|||+|+.+
T Consensus 102 ~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~ 181 (502)
T 2qe7_A 102 ALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAID 181 (502)
T ss_dssp GGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHH
T ss_pred ccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEECCCCCCchHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHhhcCc-EEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHH
Q 014249 246 LINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (428)
Q Consensus 246 ii~n~~~~~~~-~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd 324 (428)
+|.|++ +.+ +|||++||||++|+++|++++.+.+ .++||++|++|+|+||.+|++++|+|+|+||||||
T Consensus 182 ~I~~~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g--------~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd 251 (502)
T 2qe7_A 182 TIINQK--GQDVICIYVAIGQKQSTVAGVVETLRQHD--------ALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMY 251 (502)
T ss_dssp HHHGGG--SCSEEEEEEEESCCHHHHHHHHHHHHHTT--------CSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhh--cCCcEEEEEECCCcchHHHHHHHHHhhCC--------CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777764 345 6799999999999999999999886 56799999999999999999999999999999999
Q ss_pred hCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC----CCccEeEEEEEEecCCCCCCch
Q 014249 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDPA 400 (428)
Q Consensus 325 ~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~----~~GSIT~i~~v~~~~dD~~dpi 400 (428)
+|+|||||+||+||||+|+||+|+++||||+++||||++|+.+++|+|||++. ++||||++++|++|+||++|||
T Consensus 252 -~G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~~~GSITal~~v~~~~dD~s~pI 330 (502)
T 2qe7_A 252 -KGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDVSAYI 330 (502)
T ss_dssp -TTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTTTCCEEEEEEEEECSTTCCSSHH
T ss_pred -cCCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccccCCCcceeEEEEEEccCCCcccch
Confidence 89999999999999999999999999999999999999999999999999985 5799999999999999999999
Q ss_pred hhhhccccCeEEEeehhhhhc
Q 014249 401 PATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 401 ~~~~~~~ld~~ivLsR~la~~ 421 (428)
|+++++|+||||||||+||++
T Consensus 331 ~~~~~si~DgqI~Lsr~La~~ 351 (502)
T 2qe7_A 331 PTNVISITDGQIFLESDLFYS 351 (502)
T ss_dssp HHHHHTTSSEEEEECHHHHTT
T ss_pred hHHHhhhcCcEEEEehhHhhC
Confidence 999999999999999999987
No 5
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=9.6e-84 Score=674.27 Aligned_cols=322 Identities=22% Similarity=0.363 Sum_probs=298.8
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhh-hceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014249 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~-~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
..+|+|++|.|++++|+ |+|++. ++++... .+. .+++.+++++.|++++|++++||++|+.|++||++++|||
T Consensus 26 ~~~G~V~~v~g~iv~v~---gl~~~~~ge~~~i~--~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpv 99 (510)
T 2ck3_A 26 EETGRVLSIGDGIARVH---GLRNVQAEEMVEFS--SGL-KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPV 99 (510)
T ss_dssp SSEEEEEEEETTEEEEE---ECTTCBTTCEEEET--TSC-EEEEEEECSSCEEEEESSCGGGCCTTCEEEECCCCCEEEE
T ss_pred eEEeEEEEEECcEEEEe---eCCCCCCCCEEEEC--CCC-eEEEEeccCCeEEEEEECCcccccCCCEEEEeCCcceeec
Confidence 36899999999999998 886664 3333332 233 4677778999999999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHH
Q 014249 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa 243 (428)
|+++||||+|++|+|||+++++...++|||+..+|++++|...+++|.||+|+||.|+|++||||++|||++|+|||+|+
T Consensus 100 g~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~La 179 (510)
T 2ck3_A 100 GEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIA 179 (510)
T ss_dssp SGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHH
T ss_pred CccceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEecCCCCCchHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhh------cCc-EEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 014249 244 MELINNVAKA------HGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (428)
Q Consensus 244 ~~ii~n~~~~------~~~-~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~ 316 (428)
.++|.|++.. +.+ +|||++||||++|+++|++++.+.+ .++||++|++|+|+||.+|+++||+|+
T Consensus 180 l~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g--------~m~~tvvV~atad~p~~~r~~a~~~a~ 251 (510)
T 2ck3_A 180 IDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDAD--------AMKYTIVVSATASDAAPLQYLAPYSGC 251 (510)
T ss_dssp HHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTT--------CGGGEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcC--------CcccceEEEECCCCCHHHHHHHHHHHH
Confidence 7777776653 244 7999999999999999999999887 456999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC----CCccEeEEEEEEec
Q 014249 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVP 392 (428)
Q Consensus 317 tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~----~~GSIT~i~~v~~~ 392 (428)
|+|||||| +|+|||||+||+||||+|+||+|+++||||+++||||++|+.+++|+|||++. ++||||++++|++|
T Consensus 252 tiAEyfrd-~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~ 330 (510)
T 2ck3_A 252 SMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQ 330 (510)
T ss_dssp HHHHHHHT-TTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGGGTSCEEEEEEEEECS
T ss_pred HHHHHHHH-cCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhcccccCCCcceeEeeeeccC
Confidence 99999999 89999999999999999999999999999999999999999999999999985 57999999999999
Q ss_pred CCCCCCchhhhhccccCeEEEeehhhhhc
Q 014249 393 ADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 393 ~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
+||++||||+++++|+||||||||+||++
T Consensus 331 ~dD~s~pI~~~~~si~DgqI~Lsr~La~~ 359 (510)
T 2ck3_A 331 AGDVSAYIPTNVISITDGQIFLETELFYK 359 (510)
T ss_dssp TTCTTSHHHHHHHHHSSEEEEBCHHHHHH
T ss_pred CCCccccchHhhhcccceEEEEehhHhhC
Confidence 99999999999999999999999999986
No 6
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=1.3e-83 Score=666.36 Aligned_cols=324 Identities=24% Similarity=0.373 Sum_probs=298.0
Q ss_pred CceeeEEEEECCEEEEEeCCCCchh-hhceEEee--ccceeEEEEeeecCCceEEEEEecCccCCc-CCCEEEecCCCcc
Q 014249 85 GAIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT 160 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i-~~~l~v~~--~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~-~G~~V~~TG~~l~ 160 (428)
.++|+|.+|.|+++.++ |++.+ +++++.+. .+..+..||+.+ +++.+.+++|++++||+ .|+.|++||++++
T Consensus 10 ~~~g~v~~v~g~~v~v~---gl~~~~~ge~v~i~~~~g~~~~geVv~~-~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~ 85 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVE---KVSGVKYEELIEVRMQNGEIRRGQVLEV-QEDKAMVQIFEGTSGINLKNSSVRFLGHPLQ 85 (465)
T ss_dssp -CBCCEEEEETTEEEEE---SCCSCCTTCEEEEECTTSCEEEEEEEEE-ESSEEEEEETTCCTTCCTTTCEEEECSSCCE
T ss_pred ceEEEEEEEECCEEEEe---cCCCCCcCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEecCccccccCCCEEEECCCcce
Confidence 46899999999999998 76543 34554442 233567888875 77888999999999999 9999999999999
Q ss_pred ccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChh
Q 014249 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (428)
Q Consensus 161 VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKT 240 (428)
||||++|||||+|++|+|||+++++..++++||+..+|++++|...+++|.||+|+||.|+|++||||++|||++|+|||
T Consensus 86 vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt 165 (465)
T 3vr4_D 86 LGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHK 165 (465)
T ss_dssp EEECGGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHH
T ss_pred eecchhhccceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCc----EEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 014249 241 VLIMELINNVAKAHGG----FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (428)
Q Consensus 241 tLa~~ii~n~~~~~~~----~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~ 316 (428)
+|+.+|+++ ++.|.+ +|||++||||++|++||+++|.+.++ ++||++|++|+|+||.+|++++|+|+
T Consensus 166 ~L~~~Ia~~-~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~--------~~rtvvV~atsd~p~~~r~~a~~~a~ 236 (465)
T 3vr4_D 166 ELAAQIARQ-ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGA--------IDRSVMFMNLANDPAIERIATPRMAL 236 (465)
T ss_dssp HHHHHHHHH-CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTG--------GGGEEEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCC--------ccceEEEEECCCCCHHHHHHHHHHHH
Confidence 999887765 444444 78999999999999999999998874 46999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC--CCCccEeEEEEEEecCC
Q 014249 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSVQAIYVPAD 394 (428)
Q Consensus 317 tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~--~~~GSIT~i~~v~~~~d 394 (428)
|+||||||++|+|||||+||+||||+|+||+|+++||||+++||||++|++|++|||||++ .++||||++++|++|+|
T Consensus 237 tiAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~~~~GSIT~i~tv~~~~d 316 (465)
T 3vr4_D 237 TAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLKGSVTQIPILTMPED 316 (465)
T ss_dssp HHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEETTCSCEEEEEEEEECGGG
T ss_pred HHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccCCCCCcEEEEEEEEecCC
Confidence 9999999856999999999999999999999999999999999999999999999999987 46899999999999999
Q ss_pred CCCCchhhhhccccCeEEEeehhhhhc
Q 014249 395 DLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 395 D~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
|++||||+++++|+||||||||+||++
T Consensus 317 D~~~pI~~~~~~i~dg~ivLsr~La~~ 343 (465)
T 3vr4_D 317 DKTHPIPDLTGYITEGQIILTRELYKS 343 (465)
T ss_dssp CTTSHHHHHHHHHSSEEEEBCHHHHHT
T ss_pred CcccchhHHHhhhcCeEEEEcHHHHhC
Confidence 999999999999999999999999987
No 7
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=2.7e-83 Score=663.80 Aligned_cols=325 Identities=25% Similarity=0.331 Sum_probs=298.2
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchh-hhceEEee--ccceeEEEEeeecCCceEEEEEecCccCCc-CCCEEEecCCCc
Q 014249 84 KGAIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPI 159 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i-~~~l~v~~--~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~-~G~~V~~TG~~l 159 (428)
..++|+|++|.|+++.++ |++.+ +++++.+. .+..+..||+.+ +++.+.+++|++++||+ +|+.|++||+++
T Consensus 5 ~~~~g~V~~v~g~~v~v~---gl~~~~~ge~v~i~~~~g~~~~geVv~~-~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~ 80 (464)
T 3gqb_B 5 KKEYTGITYISGPLLFVE---NAKDLAYGAIVDIKDGTGRVRGGQVIEV-SEEYAVIQVFEETTGLDLATTSVSLVEDVA 80 (464)
T ss_dssp CCCBCCEEEEETTEEEEE---SCTTSCTTCEEEEECTTSCEEEEEEEEE-ESSEEEEEESSCCTTCCSSSCEEEEEESSC
T ss_pred cceeeEEEEEECCEEEEe---cCCCCCcCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEecCccccccCCCEEEECCCCc
Confidence 346899999999999998 76544 34544432 223467888875 77888999999999999 999999999999
Q ss_pred cccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCCh
Q 014249 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (428)
Q Consensus 160 ~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GK 239 (428)
+||||++|||||+|++|+|||+++++..++++||+..+|++++|...+++|.||+|+||.|+|++||||++|||++|+||
T Consensus 81 ~vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GK 160 (464)
T 3gqb_B 81 RLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPA 160 (464)
T ss_dssp EEEECSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCH
T ss_pred EEEeChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCc
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhh----------cCc-EEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHH
Q 014249 240 TVLIMELINNVAKA----------HGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR 308 (428)
Q Consensus 240 TtLa~~ii~n~~~~----------~~~-~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r 308 (428)
|+|+.+|+++. +. +.+ +|||++||||++|++||+++|.+.++ ++||++|++|+|+||.+|
T Consensus 161 t~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~--------~~rtvvv~~t~d~p~~~r 231 (464)
T 3gqb_B 161 NEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGA--------LSRSVLFLNKADDPTIER 231 (464)
T ss_dssp HHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSG--------GGGEEEEEEETTSCTHHH
T ss_pred hHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccc--------ccceEEEEECCCCCHHHH
Confidence 99998887663 33 223 78999999999999999999999874 469999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC--CCCccEeEE
Q 014249 309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSV 386 (428)
Q Consensus 309 ~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~--~~~GSIT~i 386 (428)
++++|+|+|+||||||++|+|||||+||+||||+|+||+|+++||||+++||||++|++|++|||||++ .++||||++
T Consensus 232 ~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~~~~GSIT~l 311 (464)
T 3gqb_B 232 ILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQI 311 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBTTCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccCCCCCcEEEE
Confidence 999999999999999856999999999999999999999999999999999999999999999999988 458999999
Q ss_pred EEEEecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014249 387 QAIYVPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 387 ~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
++|++|+||++||||+++++|+||||||||+||++
T Consensus 312 ~~v~~~~dD~~~pi~~~~~~i~dg~ivLsr~La~~ 346 (464)
T 3gqb_B 312 PILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRK 346 (464)
T ss_dssp EEEEETTSCTTSHHHHHHHHHSSEEEEBCHHHHHT
T ss_pred EEEEccCCCccCchhHHHhhhcCeEEEEcHHHHhC
Confidence 99999999999999999999999999999999987
No 8
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=3.9e-83 Score=668.96 Aligned_cols=321 Identities=24% Similarity=0.383 Sum_probs=297.3
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhh-hceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014249 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~-~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
..+|+|++|.|++++|+ |+|++. ++++... ..+. .+++.+++++.|++++|++++||++|+.|++||++++|||
T Consensus 38 ~~~G~V~~V~g~iv~v~---gl~~~~~gEl~~i~-~~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpv 112 (515)
T 2r9v_A 38 EDTGKVIQVGDGIARAY---GLNKVMVSELVEFV-ETGV-KGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPV 112 (515)
T ss_dssp TTEEEEEEEETTEEEEE---ECTTCCTTEEEEET-TTCC-EEEEEECCTTCEEEEEESCCTTCCTTCEEEEEEEECEEEE
T ss_pred eeeeEEEEEECcEEEEe---cCCCCCCCCEEEEe-cCCe-EEEEEEecCCeEEEEEecCcccccCCCEEEEeCCcceeec
Confidence 36899999999999998 887664 3333331 2233 4667778999999999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHH
Q 014249 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa 243 (428)
|+++||||+|++|+|||+++++...++|||+..+|++++|....++|.||+|+||.|+|++||||++|||++|+|||+|+
T Consensus 113 G~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~La 192 (515)
T 2r9v_A 113 GEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIA 192 (515)
T ss_dssp SGGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHH
T ss_pred CccceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccCCCcchhcCccccccccccccCCEEEEEcCCCCCccHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCc-EEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 014249 244 MELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (428)
Q Consensus 244 ~~ii~n~~~~~~~-~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyf 322 (428)
.++|.|++ +.+ +|||++||||++|+++|++++.+.+ .++||++|++|+|+||.+|+++||+|+|+||||
T Consensus 193 l~~I~~~~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g--------~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyf 262 (515)
T 2r9v_A 193 IDTIINQK--GQGVYCIYVAIGQKKSAIARIIDKLRQYG--------AMEYTTVVVASASDPASLQYIAPYAGCAMGEYF 262 (515)
T ss_dssp HHHHHTTT--TTTEEEEEEEESCCHHHHHHHHHHHHHTT--------GGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--cCCcEEEEEEcCCCcHHHHHHHHHHHhCC--------CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 77777764 345 6799999999999999999999887 456999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC----CCccEeEEEEEEecCCCCCC
Q 014249 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTD 398 (428)
Q Consensus 323 rd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~----~~GSIT~i~~v~~~~dD~~d 398 (428)
|| +|+||||++||+||||+|+||+|+++||||+++||||++|+.+++|+|||++. ++||||++|+|++|+||++|
T Consensus 263 rd-~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~~~D~s~ 341 (515)
T 2r9v_A 263 AY-SGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSLTALPIVETQANDISA 341 (515)
T ss_dssp HT-TTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTTTTSCEEEEEEEEEESTTCTTS
T ss_pred HH-cCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccccCCCcceEEeeeeeccCCCccc
Confidence 99 89999999999999999999999999999999999999999999999999985 57999999999999999999
Q ss_pred chhhhhccccCeEEEeehhhhhc
Q 014249 399 PAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 399 pi~~~~~~~ld~~ivLsR~la~~ 421 (428)
|||+++++|+||||||||+||++
T Consensus 342 pI~~~~~si~DGqI~Lsr~La~~ 364 (515)
T 2r9v_A 342 YIPTNVISITDGQIYLEPGLFYA 364 (515)
T ss_dssp HHHHHHHHTSSEEEEBCHHHHHH
T ss_pred cchhhhccccceEEEEchHHHhC
Confidence 99999999999999999999986
No 9
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=1.5e-83 Score=668.74 Aligned_cols=326 Identities=23% Similarity=0.340 Sum_probs=275.9
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEee--ccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcccc
Q 014249 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~--~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VP 162 (428)
..+|+|++|.|++|+|++..+ +.+ ++++.+. .+.....||+.+ .++.+.+++|++++||++|+.|++||++++||
T Consensus 12 ~~~g~V~~V~g~vv~v~g~~~-~~~-ge~v~i~~~~g~~~~geV~~~-~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vp 88 (469)
T 2c61_A 12 KEYKTITQIAGPLIFVEKTEP-VGY-NEIVNIKMGDGTVRRGQVLDS-SADIVVVQVFEGTGGLDKDCGVIFTGETLKLP 88 (469)
T ss_dssp ----------CCEEEEECCSC-CCT-TCEEEEECTTSCEEEEEEEEE-CSSEEEEEEC-------------CEEEBCEEE
T ss_pred ccccEEEEEECcEEEEeeCCC-CCc-CCEEEEEeCCCCEEEEEEEEE-eCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEE
Confidence 357999999999999985432 334 3444332 222355777765 77899999999999999999999999999999
Q ss_pred CCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHH
Q 014249 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (428)
Q Consensus 163 VG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtL 242 (428)
||++|||||+|++|+|||+++++..++++|++..+|++++|...+++|.||+|+||.|+|++||||++|||++|+|||+|
T Consensus 89 vg~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~L 168 (469)
T 2c61_A 89 ASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEI 168 (469)
T ss_dssp ECGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHH
T ss_pred ccccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc---CcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 014249 243 IMELINNVAKAH---GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (428)
Q Consensus 243 a~~ii~n~~~~~---~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiA 319 (428)
+.+|+++...++ .++|||++||||++|++||++++.+.+ .++||++|++|+|+||.+|++++|+|+|+|
T Consensus 169 l~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g--------~m~rtvvV~~tsd~p~~~r~~~~~~a~tiA 240 (469)
T 2c61_A 169 ALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTG--------ALERAVVFLNLADDPAVERIVTPRMALTAA 240 (469)
T ss_dssp HHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHS--------GGGGEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhcc--------CccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999988754332 368999999999999999999999887 456999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC--CCCccEeEEEEEEecCCCCC
Q 014249 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSVQAIYVPADDLT 397 (428)
Q Consensus 320 Eyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~--~~~GSIT~i~~v~~~~dD~~ 397 (428)
|||||++|+|||||+||+||||+|+||+|+++||+|+++||||++|++|++|||||++ .++||||++++|++|+||++
T Consensus 241 Eyfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~~~~GSIT~i~~v~~~~dD~~ 320 (469)
T 2c61_A 241 EYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDIT 320 (469)
T ss_dssp HHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBTTSSCEEEEEEEEECCSCTTT
T ss_pred HHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccCCCCCceeeeeeeecCCCCcC
Confidence 9999548999999999999999999999999999999999999999999999999987 57899999999999999999
Q ss_pred CchhhhhccccCeEEEeehhhhhc
Q 014249 398 DPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 398 dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
||||+++++|+||||||||+||++
T Consensus 321 dPI~~~~~~i~dg~ivLsr~La~~ 344 (469)
T 2c61_A 321 HPIPDLSGYITEGQIVVARELHRK 344 (469)
T ss_dssp SCCCCCGGGGTTEEEEBCHHHHHT
T ss_pred cchHHHHhhccCcEEEEcHHHHhC
Confidence 999999999999999999999987
No 10
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=5.3e-82 Score=658.25 Aligned_cols=328 Identities=71% Similarity=1.084 Sum_probs=311.9
Q ss_pred ceeeEEEEECCEEEEEeCCC-CchhhhceEEee-c--cc----eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCC
Q 014249 86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVD-H--SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS 157 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~g-lp~i~~~l~v~~-~--~~----~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~ 157 (428)
.+|+|++|+|++|+++|.++ +|.+++.+++.. . .. ++++||+++++++.+++++|++++||++|+.|++||+
T Consensus 2 ~~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~ 81 (473)
T 1sky_E 2 TRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGA 81 (473)
T ss_dssp CEEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEE
T ss_pred CceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCC
Confidence 47999999999999999864 788877666643 1 22 5899999999999999999999999999999999999
Q ss_pred CccccCCccccceEEEEeccccccCCCCCCc-cccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCC
Q 014249 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236 (428)
Q Consensus 158 ~l~VPVG~~lLGRVlD~lG~PiD~~~~i~~~-~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G 236 (428)
+++||||+++||||+|++|+|||+++++..+ ++||+++.+|++++|...+++|.||+|+||.|.|+++||+++|||++|
T Consensus 82 ~~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sG 161 (473)
T 1sky_E 82 PISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAG 161 (473)
T ss_dssp ECEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSS
T ss_pred cceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCCC
Confidence 9999999999999999999999999998777 789999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 014249 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (428)
Q Consensus 237 ~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~ 316 (428)
+|||||+.++++++++.+.++|||+++|||++|+.++++++.+.++ ++|+++|++++++||+.|++++++++
T Consensus 162 vGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~--------l~~tvvv~~~~~d~pg~r~~~~~~~l 233 (473)
T 1sky_E 162 VGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGV--------ISKTAMVFGQMNEPPGARMRVALTGL 233 (473)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSG--------GGGEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCC--------cceeEEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999999999888888999999999999999999999988864 46999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCC
Q 014249 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL 396 (428)
Q Consensus 317 tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~ 396 (428)
++||||++++|+|||||+|||||||+||||+|+++||+|+++||||++|++|++|||||++.++||||++++|++|+||+
T Consensus 234 tiAEyFrd~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~~~~GSIT~i~tv~~~~dD~ 313 (473)
T 1sky_E 234 TMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITSTAKGSITSIQAIYVPADDY 313 (473)
T ss_dssp HHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSCBSSCEEEEEEECCCSTTCS
T ss_pred HHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcCCCCCceEEEEEEEecCCCC
Confidence 99999998779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhccccCeEEEeehhhhhc
Q 014249 397 TDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 397 ~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
+|||||++++|+||||||||+||++
T Consensus 314 ~dpi~~~~~~i~dg~ivLsr~La~~ 338 (473)
T 1sky_E 314 TDPAPATTFSHLDATTNLERKLAEM 338 (473)
T ss_dssp SSHHHHHHHTTCSEEEEBCTTHHHH
T ss_pred CCcchHHHHhhcCceEEecHHHHhC
Confidence 9999999999999999999999987
No 11
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=1.1e-83 Score=673.37 Aligned_cols=321 Identities=23% Similarity=0.337 Sum_probs=297.5
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhh-hceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014249 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~-~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
..+|+|++|.|++++|+ |+|++. ++++... .+. .+++.+++++.|++++|++++||++|+.|++||++++|||
T Consensus 27 ~~~G~V~~v~g~iv~v~---gl~~~~~ge~~~i~--~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpv 100 (507)
T 1fx0_A 27 VNTGTVLQVGDGIARIH---GLDEVMAGELVEFE--EGT-IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPV 100 (507)
T ss_dssp TTEEEECCCCSSEEEEE---ECTTCCTTCCEEET--TCC-EEEEEEECSSEEEEEECSCGGGCCTTCEEECCCCCCEEEE
T ss_pred eEEEEEEEEeCCEEEEE---ECCCccCCCEEEEC--CCc-eEEEEeccCCeEEEEEecCccCCcCCCEEEEeCCcceeec
Confidence 36899999999999998 886654 3333332 233 4667778999999999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHH
Q 014249 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa 243 (428)
|+++||||+|++|+|||+++++...++|||++.+|++++|...+++|.||+|+||.|+|++||||++|||++|+|||+|+
T Consensus 101 G~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~La 180 (507)
T 1fx0_A 101 SEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVA 180 (507)
T ss_dssp SSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHHHHH
T ss_pred CccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEecCCCCCccHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Q 014249 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (428)
Q Consensus 244 ~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfr 323 (428)
.++|.|++ ++..+|||++||||++|+++|++++.+.+ .++||++|++|+|+||.+|+++||+|+|+|||||
T Consensus 181 l~~I~~~~-~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g--------~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfr 251 (507)
T 1fx0_A 181 TDTILNQQ-GQNVICVYVAIGQKASSVAQVVTNFQERG--------AMEYTIVVAETADSPATLQYLAPYTGAALAEYFM 251 (507)
T ss_dssp HHHHHTCC-TTTCEEEEEEESCCHHHHHHHHHHTGGGT--------GGGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhh-cCCcEEEEEEcCCCchHHHHHHHHHHhcC--------ccccceEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77777764 33347899999999999999999998876 4579999999999999999999999999999999
Q ss_pred HhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC----CCccEeEEEEEEecCCCCCCc
Q 014249 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 324 d~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~----~~GSIT~i~~v~~~~dD~~dp 399 (428)
| +|+||||++||+||||+|+||+|+++||||+++||||++|+.+++|+|||++. ++||||++++|++|+||++||
T Consensus 252 d-~G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~~~GSITal~~v~~~~~D~s~p 330 (507)
T 1fx0_A 252 Y-RERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSAY 330 (507)
T ss_dssp H-TTCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTTTSCEEEECCEEECSTTCTTSH
T ss_pred H-cCCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccccCCCcceeeeeeeeccCCCcccc
Confidence 9 89999999999999999999999999999999999999999999999999985 579999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014249 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
||+++++|+||||||||+||++
T Consensus 331 I~~~~~si~DgqIvLsr~La~~ 352 (507)
T 1fx0_A 331 IPTNVISITDGQIFLSADLFNA 352 (507)
T ss_dssp HHHHHHTTSSCBCCCCSSSSSS
T ss_pred hHHHHHhhcCcEEEEehhHhhC
Confidence 9999999999999999999986
No 12
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=7.4e-79 Score=642.24 Aligned_cols=327 Identities=26% Similarity=0.390 Sum_probs=286.6
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCC
Q 014249 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG 164 (428)
+..|+|.+|.|++|++++..+. .+ ++++.+. +.++..||+.+.+ +.+.+++|++|+||++|++|++||++++||||
T Consensus 8 m~~G~V~~V~G~vv~v~g~~~~-~~-gE~v~v~-~~~l~gEVi~~~~-d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG 83 (600)
T 3vr4_A 8 MQIGKIIKVSGPLVMAENMSEA-SI-QDMCLVG-DLGVIGEIIEMRQ-DVASIQVYEETSGIGPGEPVRSTGEALSVELG 83 (600)
T ss_dssp CCCEEEEEEETTEEEEESCTTS-CT-TCEEEET-TTTEEEEEEEEET-TEEEEEESSCCTTCCTTCEEEECSSSSEEEES
T ss_pred CcceEEEEEECcEEEEEcCCCC-cc-CCEEEEC-CCcEEEEEEEEcC-CcEEEEEccCCCCCCCCCEEEECCCCCEEEeC
Confidence 3469999999999999854432 33 4444433 2468999999855 56679999999999999999999999999999
Q ss_pred ccccceEEEEeccccccC----C-----------CCCCc-----------------------------------------
Q 014249 165 RVTLGRIMNVIGEPIDEK----G-----------DLKTE----------------------------------------- 188 (428)
Q Consensus 165 ~~lLGRVlD~lG~PiD~~----~-----------~i~~~----------------------------------------- 188 (428)
++|||||+|++|+|||+. + ++..+
T Consensus 84 ~~lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~ 163 (600)
T 3vr4_A 84 PGIISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIK 163 (600)
T ss_dssp TTCTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCC
T ss_pred HHHHhhhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCC
Confidence 999999999999999986 4 22211
Q ss_pred --------------------------------cccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCC
Q 014249 189 --------------------------------HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236 (428)
Q Consensus 189 --------------------------------~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G 236 (428)
++||++.. |...+|...+++|.||+|+||.|+|++||||++|||++|
T Consensus 164 g~v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~~-~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g 242 (600)
T 3vr4_A 164 GTVQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVRRG-RPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFG 242 (600)
T ss_dssp EEEEEECCEEECTTSCCEEEEETTEEEEECSCEEEETTSC-CCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTT
T ss_pred ceEEEecCCcceeceeEEEEeccCCcccccccccccccCC-CchhhccCCCceecccchhhhccCCccCCCEEeeecCCC
Confidence 23555554 345789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 014249 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (428)
Q Consensus 237 ~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~ 316 (428)
+|||+|+++|+++ .+.+++||++||||++|++|++++|.+....+++ ...++|+++|++|+|+||.+|++++|+|+
T Consensus 243 ~GKT~L~~~ia~~---~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G-~~~m~rtvvV~~tsd~p~~~R~~~~~~al 318 (600)
T 3vr4_A 243 AGKTVVQHQIAKW---SDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTG-ESLMERTVLIANTSNMPVAAREASIYTGI 318 (600)
T ss_dssp SCHHHHHHHHHHH---SSCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTC-SBGGGGEEEEEEETTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhc---cCCCEEEEEEecccHHHHHHHHHHHHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999998876 2568999999999999999999999763222222 23578999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC-------CCCccEeEEEEE
Q 014249 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-------TKKGSITSVQAI 389 (428)
Q Consensus 317 tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~-------~~~GSIT~i~~v 389 (428)
|+|||||| +|+|||||+||++|||+|+||+|+++||+|+++|||++++++|++|||||++ .++||||++++|
T Consensus 319 tiAEyfrd-~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v 397 (600)
T 3vr4_A 319 TIAEYFRD-MGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAV 397 (600)
T ss_dssp HHHHHHHT-TTCEEEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEEEEEE
T ss_pred HHHHHHHH-cCCCEEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhccccccCCCCCCcceEEEEEE
Confidence 99999998 8999999999999999999999999999999999999999999999999975 368999999999
Q ss_pred EecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014249 390 YVPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 390 ~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
++|+||++||||++|++|+||||||||+||++
T Consensus 398 ~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~ 429 (600)
T 3vr4_A 398 SPSGGDISEPVTQNTLRVVKVFWGLDSSLAQK 429 (600)
T ss_dssp CCSSSCTTSHHHHHHHTTCCEECCBCHHHHTT
T ss_pred ECCCCCCCCcchhhhhhhccEEEEEhhhHHhC
Confidence 99999999999999999999999999999987
No 13
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=9.7e-79 Score=639.12 Aligned_cols=325 Identities=29% Similarity=0.423 Sum_probs=285.4
Q ss_pred eeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCCcc
Q 014249 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV 166 (428)
Q Consensus 87 ~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG~~ 166 (428)
.|+|.+|.|++|++++..+. .+ ++++.+. +.++.+||+.+.+ +.+.+++|++++||++|++|++||++++||||++
T Consensus 3 ~G~V~~V~G~vv~v~g~~~~-~~-gE~v~v~-~~~l~gEVi~~~~-d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~ 78 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGMLGA-RM-YDISKVG-EEGLVGEIIRLDG-DTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPG 78 (578)
T ss_dssp EEEEEEEETTEEEEESCTTC-CT-TEEEEET-TTTEEEEEEEEET-TEEEEEESSCCTTCCTTCEEEEEEEESEEEESTT
T ss_pred eeEEEEEECCEEEEEcCCCC-cc-CCEEEEC-CCcEEEEEEEEcC-CcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHH
Confidence 69999999999999955432 34 3444333 3468999999855 5567999999999999999999999999999999
Q ss_pred ccceEEEEeccccccC----CC----------CCCc--------------------------------------------
Q 014249 167 TLGRIMNVIGEPIDEK----GD----------LKTE-------------------------------------------- 188 (428)
Q Consensus 167 lLGRVlD~lG~PiD~~----~~----------i~~~-------------------------------------------- 188 (428)
|||||+|++|+|||+. ++ +..+
T Consensus 79 lLGrV~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~ 158 (578)
T 3gqb_A 79 MLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVK 158 (578)
T ss_dssp CTTCEECTTSCBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEE
T ss_pred HhhhhhCcCCCcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeE
Confidence 9999999999999986 21 2111
Q ss_pred --------------------------cccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHH
Q 014249 189 --------------------------HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (428)
Q Consensus 189 --------------------------~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtL 242 (428)
++||+++.+| ..+|...+++|.||+|+||.|+|++||||++|||++|+|||+|
T Consensus 159 ~i~~~G~~~v~~~i~~~~~g~~i~~~~~wPv~~~~p-~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l 237 (578)
T 3gqb_A 159 EVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRARP-VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT 237 (578)
T ss_dssp EECCSEEECTTSCSEEETTCCEECSCEEEETTSCCC-CSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHH
T ss_pred EeccCCcccccceeEEeecCccccccccccccCCCC-hHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHH
Confidence 2345544433 5689899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 014249 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (428)
Q Consensus 243 a~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyf 322 (428)
+++|+++. +.+++||++||||++|++|++++|.+....+.+ ...++|+++|++|||+||.+|++++|+|+|+||||
T Consensus 238 ~~~ia~~~---~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G-~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyf 313 (578)
T 3gqb_A 238 QQSLAKWS---NADVVVYVGSGERGNEMTDVLVEFPELTDPKTG-GPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYF 313 (578)
T ss_dssp HHHHHHHS---SCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTS-SBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcc---CCCEEEEEEecccHHHHHHHHHHHHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 99888763 568999999999999999999999773222221 23678999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC-----CCCccEeEEEEEEecCCCCC
Q 014249 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-----TKKGSITSVQAIYVPADDLT 397 (428)
Q Consensus 323 rd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~-----~~~GSIT~i~~v~~~~dD~~ 397 (428)
|| +|+|||||+||++|||+|+||+|+++||+|+++|||++++++|++|||||++ .++||||++++|++|+||++
T Consensus 314 rd-~G~dVLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~~~~GSIT~i~~v~~~gdD~t 392 (578)
T 3gqb_A 314 RD-QGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMS 392 (578)
T ss_dssp HH-TTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTTSCEEEEEEEEECCCTTTCTT
T ss_pred HH-cCCCEEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCcccCCCCCcceEEEEEEEcCCCCCC
Confidence 99 8999999999999999999999999999999999999999999999999986 37899999999999999999
Q ss_pred CchhhhhccccCeEEEeehhhhhc
Q 014249 398 DPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 398 dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
||||++|++|+||||||||+||++
T Consensus 393 dPi~~~t~~i~dg~ivLsr~La~~ 416 (578)
T 3gqb_A 393 EPVTQSTLRIVGAFWRLDASLAFR 416 (578)
T ss_dssp SHHHHHHHTTCSEECCBCHHHHHH
T ss_pred CcchHHHhhhcCceEEECHHHHhC
Confidence 999999999999999999999986
No 14
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=1.3e-78 Score=638.41 Aligned_cols=325 Identities=27% Similarity=0.410 Sum_probs=226.6
Q ss_pred ceeeEEEEECCEEEEEeCCCCchh-hhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCC
Q 014249 86 AIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~glp~i-~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG 164 (428)
..|+|.+|.|++|.++ |++++ +++++.+. +.++..||+.+ +++.+.+++|+++.||++|++|+.||++++||||
T Consensus 3 ~~G~V~~V~G~iv~~~---g~~~~~~gElv~v~-~~~l~geVi~l-~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG 77 (588)
T 3mfy_A 3 AKGRIIRVTGPLVVAD---GMKGAKMYEVVRVG-ELGLIGEIIRL-EGDKAVIQVYEETAGVRPGEPVVGTGASLSVELG 77 (588)
T ss_dssp ---------------------------------------------------------------CCCCCSSSSSCCEEEES
T ss_pred ceeEEEEEECCEEEEE---cCCCCccCCEEEEc-CCceEEEEEEe-cCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeC
Confidence 4699999999999997 66633 34444332 23678888875 7788889999999999999999999999999999
Q ss_pred ccccceEEEEeccccccCCCC--------------CC-------------------------------------------
Q 014249 165 RVTLGRIMNVIGEPIDEKGDL--------------KT------------------------------------------- 187 (428)
Q Consensus 165 ~~lLGRVlD~lG~PiD~~~~i--------------~~------------------------------------------- 187 (428)
++|||||+|++|+|||+.+++ ..
T Consensus 78 ~gLLGrV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g 157 (588)
T 3mfy_A 78 PRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEG 157 (588)
T ss_dssp TTCTTCEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCE
T ss_pred HHHHhhccCCCCCcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCc
Confidence 999999999999999986431 10
Q ss_pred --------------------------------ccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCC
Q 014249 188 --------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235 (428)
Q Consensus 188 --------------------------------~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~ 235 (428)
.++||+++.+| .++|...+++|.||+|+||.|+|++||||++|||++
T Consensus 158 ~v~~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~~~p-~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~ 236 (588)
T 3mfy_A 158 EIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPA 236 (588)
T ss_dssp EEEEECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTSCCC-CSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCC
T ss_pred eEEEeccCCcccccceEEEEecCCCccccccccccccccCCCc-hhhhccCCcccccCcchhhccCCcccCCeEEeecCC
Confidence 12366666555 478999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 014249 236 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315 (428)
Q Consensus 236 G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a 315 (428)
|||||+|+++|+++ .+.++|||++||||++|++|++++|.+....+.+ ...++||++|++|||+||.+|++++|+|
T Consensus 237 g~GKT~L~~~ia~~---~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g-~~~m~rtvvV~~tsd~p~~~r~~~~~~a 312 (588)
T 3mfy_A 237 GSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG-KPLMERTVLIANTSNMPVAAREASIYTG 312 (588)
T ss_dssp SHHHHHHHHHHHHH---SSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTT-EEGGGGEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc---cCCCEEEEEEecccHHHHHHHHHHHHHhcccccc-cccccceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999998765 3568999999999999999999999773211111 2357899999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC-------CCCccEeEEEE
Q 014249 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-------TKKGSITSVQA 388 (428)
Q Consensus 316 ~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~-------~~~GSIT~i~~ 388 (428)
+|+|||||| +|+|||||+||++|||+|+||+|+++||+|+++|||++++++|++|||||++ .++||||++++
T Consensus 313 ~tiAEyfrd-~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~ 391 (588)
T 3mfy_A 313 ITIAEYFRD-MGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGA 391 (588)
T ss_dssp HHHHHHHHH-TTCEEEEEEECTTTCCCCC----------------CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEEEE
T ss_pred HHHHHHHHH-cCCCEEEeecchHHHHHHHHHHHHhccCCCccccCCchhhhhhhHHHhccccccccCCCCCCcceEEEEE
Confidence 999999999 8999999999999999999999999999999999999999999999999975 35899999999
Q ss_pred EEecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014249 389 IYVPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 389 v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
|++|+||++||||++|++|+||||||||+||++
T Consensus 392 v~~~gdD~sdpi~~~~~~i~dg~i~Lsr~La~~ 424 (588)
T 3mfy_A 392 VSPPGGDFSEPVVQNTLRVVKVFWALDADLARR 424 (588)
T ss_dssp CCCTTSCSSCSHHHHHHHHCSEECCBCHHHHHT
T ss_pred EECCCCCCCCcchHHHHHhccCeeecCHHHHhC
Confidence 999999999999999999999999999999987
No 15
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-60 Score=482.51 Aligned_cols=257 Identities=17% Similarity=0.237 Sum_probs=227.4
Q ss_pred cCCcCCCEEEecCCCccccCCccccceEEEEecccccc-CCCCCCccccccccCCCcchhcccccceeeccceeeccccc
Q 014249 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAP 222 (428)
Q Consensus 144 ~GL~~G~~V~~TG~~l~VPVG~~lLGRVlD~lG~PiD~-~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~p 222 (428)
-+|+.||.|...-++.+-.--...|+||.+++|++.+. ...+.+++..|++......++ ++++.||+|+||.|+|
T Consensus 96 ~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~~~~r~~fe~l~Pi~P~~R~~le----~e~~~tGiraID~l~P 171 (427)
T 3l0o_A 96 FNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVNFDNLTPDYPRERFILE----TDPKIYSTRLIDLFAP 171 (427)
T ss_dssp TTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC----CCCCGGGSCEECCCSBCCCC----CSTTCHHHHHHHHHSC
T ss_pred cCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHHhccccccccCCCCCchhhcccc----ccchhccchhhhhccc
Confidence 59999999998877665433335789999999998875 556667777777654443333 3899999999999999
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcE-EEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecC
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~-~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~ 301 (428)
+|||||++||||+|+|||+|+++|+++..++|.++ |||++||||++|++||++++. .+||++|+
T Consensus 172 igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~---------------G~VV~ata 236 (427)
T 3l0o_A 172 IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTN---------------AIVIAAPF 236 (427)
T ss_dssp CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCC---------------SEEEECCT
T ss_pred ccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhC---------------CeEEEECC
Confidence 99999999999999999999999999987778775 599999999999988776551 37999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC-CCC
Q 014249 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-TKK 380 (428)
Q Consensus 302 d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~-~~~ 380 (428)
|+||.+|++++++|+++|||||+ +|+|||||+|||||||+|+||+++++||+|+ .||||++++.+++++|||++ .++
T Consensus 237 dep~~~r~~~a~~altiAEyfrd-~G~dVLil~DslTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie~~ 314 (427)
T 3l0o_A 237 DMPPDKQVKVAELTLEMAKRLVE-FNYDVVILLDSLTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNTREG 314 (427)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH-TTCEEEEEEECHHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEESSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEecccchHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHHhhcccCCC
Confidence 99999999999999999999998 8999999999999999999999999999999 59999999999999999997 479
Q ss_pred ccEeEEEEEEec-CCCCCCchhhhhccccCeEEEeehhhhhc
Q 014249 381 GSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 381 GSIT~i~~v~~~-~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
||||++++|+++ +||++|||++++++|+||||||||+||++
T Consensus 315 GSIT~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~ 356 (427)
T 3l0o_A 315 GSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANK 356 (427)
T ss_dssp CEEEEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTT
T ss_pred cceeEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhC
Confidence 999999999999 89999999999999999999999999997
No 16
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=7e-58 Score=465.53 Aligned_cols=257 Identities=18% Similarity=0.259 Sum_probs=227.0
Q ss_pred CCcCCCEEEecCCCccccCCc--cccceEEEEecccccc-CCCCCCccccccccCCCcchhcccccceeeccceeecccc
Q 014249 145 GLVRGQRVLNTGSPITVPVGR--VTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLA 221 (428)
Q Consensus 145 GL~~G~~V~~TG~~l~VPVG~--~lLGRVlD~lG~PiD~-~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~ 221 (428)
+|+.||.|...-++.+ -++ .-|-+|-.++|.+++. ++.+.+++..|++......++.. ..+++.||+|+||.++
T Consensus 93 ~lr~gd~v~g~~r~~~--~~ER~faLl~v~~vn~~~pe~~~~ri~Fe~ltp~yP~er~~Le~~-~~~~~~tGiraID~~~ 169 (422)
T 3ice_A 93 NLRTGDTISGKIRPPK--EGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG-NGSTEDLTARVLDLAS 169 (422)
T ss_dssp TCCTTCEEEEEEECCC--SSCCSEEEEEEEEESSSCHHHHTTSCCTTTSCEESCCSBCCCCCT-TCCTTHHHHHHHHHHS
T ss_pred CCCCCCEEEEEEeCCC--ccchHHHHhccCcccCCChhhhcCCceeccccccCCCCccccccC-CCCcccccceeeeeee
Confidence 8999999987655433 122 2344666677776653 67788888888887655555532 2379999999999999
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcE-EEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEec
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ 300 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~-~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t 300 (428)
|+++||+++||||+|+|||||+++|+++..++|.++ |||++||||++|+++|++++ +++||++|
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~---------------~~~vV~at 234 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV---------------KGEVVAST 234 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC---------------SSEEEEEC
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh---------------CeEEEEeC
Confidence 999999999999999999999999999887778775 68999999999999876544 47899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC-CC
Q 014249 301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-TK 379 (428)
Q Consensus 301 ~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~-~~ 379 (428)
+|+||.+|++++++|+++|||||+ +|+|||||+|||||||+|+||+++++||+|+ +|||+++|+.+++|+|||++ .+
T Consensus 235 adep~~~r~~~a~~alt~AEyfrd-~G~dVLil~DslTR~A~A~revs~~~Ge~ps-~Gyp~~~~~~~~rl~erA~~~~~ 312 (422)
T 3ice_A 235 FDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEE 312 (422)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH-TSCEEEEEEECHHHHHHHHHHHSCCSSCBCS-SSCBHHHHHHHHHHHTTCEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEeCchHHHHHHHHHHHhcCCCCC-CCcCHHHHhhhHHHHHhccccCC
Confidence 999999999999999999999998 8999999999999999999999999999998 89999999999999999998 47
Q ss_pred CccEeEEEEEEec-CCCCCCchhhhhccccCeEEEeehhhhhc
Q 014249 380 KGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 380 ~GSIT~i~~v~~~-~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
+||||++++|++| +||++|||++++++|+||||||||+||++
T Consensus 313 ~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~ 355 (422)
T 3ice_A 313 GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 355 (422)
T ss_dssp SCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHT
T ss_pred CcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhc
Confidence 9999999999999 88999999999999999999999999997
No 17
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=3.8e-51 Score=424.75 Aligned_cols=323 Identities=26% Similarity=0.413 Sum_probs=284.7
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEee-ccc---eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCC---
Q 014249 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSV---RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS--- 157 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~-~~~---~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~--- 157 (428)
..+|+|++|.|++++|++. .+.+.+.+++.. .+. .+.+||+. ++++.+++++|++++||++|+.|.+||+
T Consensus 8 ~~~g~v~~v~g~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~ev~~-~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~ 84 (438)
T 2dpy_A 8 RRYGRLTRATGLVLEATGL--QLPLGATCIIERQDGPETKEVESEVVG-FNGQRLFLMPLEEVEGILPGARVYARNGHGD 84 (438)
T ss_dssp CCCEEEEECSSSSEEEESC--CCCSSCEEEEEECSTTSCEEEEEEEEE-CCTTCEEEEESSCCTTCCTTEEEEEC-----
T ss_pred ceeeEEEEEECcEEEEEeC--CCCCCCEEEEecCCCCccccEEEEEEE-EcCCEEEEEEccCCCCCCCCCEEEECCCccc
Confidence 3479999999999999955 234443344433 122 57889987 6899999999999999999999999999
Q ss_pred ----CccccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEEC
Q 014249 158 ----PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFG 233 (428)
Q Consensus 158 ----~l~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG 233 (428)
++++|+|+++||||+|++|+|+|+.+++...++||++..+|..+++....+++.||+++||.++++++||+++|+|
T Consensus 85 ~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG 164 (438)
T 2dpy_A 85 GLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFA 164 (438)
T ss_dssp -----CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEE
T ss_pred cccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEEC
Confidence 9999999999999999999999999888778889999988889999999999988999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHH
Q 014249 234 GAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313 (428)
Q Consensus 234 ~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~ 313 (428)
|+|+|||||+..|++.. +.+..++..+|+|.+|+.++.+++.+.+ .+.+++.+++|+++|+..++.+++
T Consensus 165 ~sGsGKSTLl~~Iag~~---~~~~G~i~~~G~r~~ev~~~~~~~~~~~--------~l~r~i~~v~q~~~~~~~~~~v~~ 233 (438)
T 2dpy_A 165 GSGVGKSVLLGMMARYT---RADVIVVGLIGERGREVKDFIENILGPD--------GRARSVVIAAPADVSPLLRMQGAA 233 (438)
T ss_dssp CTTSSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHHTTTHHH--------HHHTEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhccc---CCCeEEEEEeceecHHHHHHHHhhcccc--------ccCceEEEEECCCCCHHHHHHHHH
Confidence 99999999998887763 3466788899999999988765443221 234788999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEEEe
Q 014249 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYV 391 (428)
Q Consensus 314 ~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v~~ 391 (428)
.++++||||++ ++++|+.++|+++||+.++|+++.++++||...||+++.++.+.+++||+++. ++||||++++|++
T Consensus 234 ~~~~~ae~~~~-~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv 312 (438)
T 2dpy_A 234 YATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLT 312 (438)
T ss_dssp HHHHHHHHHHT-TTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEEC
T ss_pred HHHHHHHHHHh-CCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEE
Confidence 99999999998 79999999999999999999999999999999999999999999999999875 5699999999999
Q ss_pred cCCCCCCchhhhhccccCeEEEeehhhhhcc
Q 014249 392 PADDLTDPAPATTFAHLDATTVLSRQVRMDT 422 (428)
Q Consensus 392 ~~dD~~dpi~~~~~~~ld~~ivLsR~la~~~ 422 (428)
+++|+++|++|++..+.||+|++++++++.-
T Consensus 313 ~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 313 EGDDQQDPIADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp SSSCSCCHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred eCCCccchhhceEEEEeCcEEEEeCCHHHcc
Confidence 9999999999999999999999999998763
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=1e-47 Score=388.10 Aligned_cols=251 Identities=30% Similarity=0.490 Sum_probs=232.0
Q ss_pred CccccCCccccceEEEEeccccccCC-CCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCC
Q 014249 158 PITVPVGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236 (428)
Q Consensus 158 ~l~VPVG~~lLGRVlD~lG~PiD~~~-~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G 236 (428)
+++||||+++||||+|++|+|||+++ ++...++||++..+|+.+++....+++.||+++||.++|+++||+++|+|++|
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG 81 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG 81 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence 68999999999999999999999998 88888899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 014249 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (428)
Q Consensus 237 ~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~ 316 (428)
+|||||+..|++.. +.+..++..+|++.+|+.+++..+.+ ..+++++++++++++|+..|+.+++.++
T Consensus 82 aGKTTLl~~I~g~~---~~~~g~i~~~G~~~~ev~~~i~~~~~---------~~~~~~v~~~~~~~~~~~~r~~~~~~~~ 149 (347)
T 2obl_A 82 VGKSTLLGMICNGA---SADIIVLALIGERGREVNEFLALLPQ---------STLSKCVLVVTTSDRPALERMKAAFTAT 149 (347)
T ss_dssp SSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHTTSCH---------HHHTTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCC---CCCEEEEEEecccHHHHHHHHHhhhh---------hhhhceEEEEECCCCCHHHHHHHHHHHH
Confidence 99999998887763 45777889999999998776544111 1245899999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCC
Q 014249 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL 396 (428)
Q Consensus 317 tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~ 396 (428)
++||||++ +|++|++++|+++||+++||+++.++++||...||+|+.++.+.+++||+++.++||||++++|+++++|+
T Consensus 150 ~~ae~~~~-~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl 228 (347)
T 2obl_A 150 TIAEYFRD-QGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNV 228 (347)
T ss_dssp HHHHHHHT-TTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCC
T ss_pred HHHHHHHh-ccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCC
Confidence 99999998 89999999999999999999999999999999999999999999999999875679999999999999999
Q ss_pred CCchhhhhccccCeEEEeehhhhhc
Q 014249 397 TDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 397 ~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
++|++|.++.+.||+|+|++.+++.
T Consensus 229 ~~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 229 NDPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CCHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred CChhhhheEEeeCcEEEEeCCHHHc
Confidence 9999999999999999999999986
No 19
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.87 E-value=5e-10 Score=116.28 Aligned_cols=106 Identities=25% Similarity=0.332 Sum_probs=73.7
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHH
Q 014249 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDL 273 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl 273 (428)
++.+|..++++.+|+++....+.+..++..++...++|+||||||||+|++.+++.... .+.-+.+.+. .+.+
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~---~f~~l~a~~~---~~~~- 90 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA---DVERISAVTS---GVKE- 90 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC---EEEEEETTTC---CHHH-
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC---CeEEEEeccC---CHHH-
Confidence 47899999999999999988899999999999999999999999999999988876422 2222222222 1222
Q ss_pred HHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHH
Q 014249 274 YREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANS 345 (428)
Q Consensus 274 ~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~r 345 (428)
++++.+. +..... .++..+||+||+++|+.+++
T Consensus 91 ir~~~~~--------------------------------------a~~~~~-~~~~~iLfIDEI~~l~~~~q 123 (447)
T 3pvs_A 91 IREAIER--------------------------------------ARQNRN-AGRRTILFVDEVHRFNKSQQ 123 (447)
T ss_dssp HHHHHHH--------------------------------------HHHHHH-TTCCEEEEEETTTCC-----
T ss_pred HHHHHHH--------------------------------------HHHhhh-cCCCcEEEEeChhhhCHHHH
Confidence 2222222 333333 68889999999999988766
No 20
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.04 E-value=3.3e-06 Score=83.33 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=40.2
Q ss_pred CCCcc-hhcccccceeeccceeeccccccCC--CceeEEECCCCCChhHHHHHHHHHHH
Q 014249 196 EAPAF-VEQATEQQILVTGIKVVDLLAPYQR--GGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 196 ~~P~~-ler~~~qe~L~TGikvID~l~pigr--Gqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+|.. ++++.+++......+.+-.++..++ ++.++|+||||||||+|++.+++...
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45555 7788888876544444444444444 46899999999999999999988763
No 21
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.04 E-value=3.8e-06 Score=75.27 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=38.8
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.+|..++.+.+++... +.+..++..++...++|+|++|+|||+|+..+++...
T Consensus 10 ~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVI---QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HTSCSSGGGCCSCHHHH---HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHcCcHHHH---HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 45666777777766543 3344444445556799999999999999999887653
No 22
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.88 E-value=3.4e-05 Score=75.67 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=59.9
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhc----CcE-EEEEeecCCcchHHHHHHHHHHccccccCcccCCC
Q 014249 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH----GGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADS 292 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~----~~~-~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~ 292 (428)
...+....++.++|+||+|+|||+|+..+++...... .+. .++..+.+ .....+++.++.+.- +...
T Consensus 36 ~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~l----~~~~--- 107 (387)
T 2v1u_A 36 APALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH-RETPYRVASAIAEAV----GVRV--- 107 (387)
T ss_dssp GGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT-SCSHHHHHHHHHHHH----SCCC---
T ss_pred HHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc-CCCHHHHHHHHHHHh----CCCC---
Confidence 3333347788999999999999999999887654321 133 35555543 334445555555431 0000
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHH
Q 014249 293 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (428)
Q Consensus 293 ~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A 343 (428)
.....+...-+. .+.+++.. .++.++||+||++++...
T Consensus 108 ------~~~~~~~~~~~~------~l~~~l~~-~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 108 ------PFTGLSVGEVYE------RLVKRLSR-LRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp ------CSSCCCHHHHHH------HHHHHHTT-SCSEEEEEEETTTHHHHS
T ss_pred ------CCCCCCHHHHHH------HHHHHHhc-cCCeEEEEEccHhhhccc
Confidence 000111111111 12233333 678999999999998875
No 23
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.87 E-value=6e-06 Score=79.18 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=43.0
Q ss_pred cccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++.+|..++++.+++... +.+..++..++...++|+||+|+|||+++..+++..
T Consensus 8 ~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 8 VEKYRPRTLDEVVGQDEVI---QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp TTTTSCSSGGGSCSCHHHH---HHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHhCCHHHH---HHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3467888888888888764 445555555666679999999999999999988764
No 24
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=6e-06 Score=79.50 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=42.8
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++.+|..++++.+++... +.+..++..++...++|+||+|+|||+++..+++..
T Consensus 17 ~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIV---KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp HHTCCCSTTTCCSCHHHH---HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hccCCCCHHHhhCCHHHH---HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 457888888888888765 344455566676679999999999999999988765
No 25
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.83 E-value=1.6e-05 Score=77.31 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=42.7
Q ss_pred cccCCCcchhcccccceeeccceeeccccccCCCceeEEECC-CCCChhHHHHHHHHHH
Q 014249 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGG-AGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~-~G~GKTtLa~~ii~n~ 250 (428)
+++.+|..++++.+++... +.+..++..++..+..++|| ||+|||++++.+++..
T Consensus 17 ~~k~rP~~~~~ivg~~~~~---~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 17 EQKYRPSTIDECILPAFDK---ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHSCCCSTTTSCCCHHHH---HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHhhCCCCHHHHhCcHHHH---HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4567889999999998774 55666666677767767666 9999999999887654
No 26
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.83 E-value=3e-05 Score=75.61 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.+..++|+||+|||||||++.+++....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5688999999999999999999887543
No 27
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.78 E-value=4.6e-05 Score=66.45 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=34.0
Q ss_pred CCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 197 ~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+|..++.+.+++... +-+-..+.......++|+|++|+|||+|+..+++...
T Consensus 17 ~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEI---RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp HTTCSCCCCSCHHHH---HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hhccccccccchHHH---HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 344455555554432 2222222235678899999999999999999987753
No 28
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.76 E-value=3.6e-05 Score=79.33 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=28.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEe
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAG 262 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~g 262 (428)
+..++|+||+|+|||||++.+++.....+.+.. +|..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 688999999999999999999887655544443 4443
No 29
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=1.1e-05 Score=79.55 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=43.4
Q ss_pred cccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++.+|..+++..++++.. +.|...+.-++-..++|+||+|+||||++..+++..
T Consensus 16 ~~k~rp~~~~~~~g~~~~~---~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 16 VEKYRPETLDEVYGQNEVI---TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHTCCSSGGGCCSCHHHH---HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHhcCcHHHH---HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999888764 345556666665569999999999999999988765
No 30
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=1.9e-05 Score=75.86 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=42.0
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.+|..++++.+++... +.+..++..++...++|+||+|+|||+++..+++..
T Consensus 13 ~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETI---DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp HHTCCSSGGGCCSCTHHH---HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHCCHHHH---HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356788888888887664 445555556666679999999999999999998775
No 31
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.70 E-value=1.6e-05 Score=71.81 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=37.8
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCC-ceeEEECCCCCChhHHHHHHHHHHH
Q 014249 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+.+|..++++.+++... +.+...+..++. +.++|+|++|+|||+|+..+++...
T Consensus 15 ~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHTCCCSGGGCCSCHHHH---HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred hccCCccHHHHhCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345666777777776554 233333333443 3589999999999999999987654
No 32
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.68 E-value=2.3e-05 Score=71.58 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=30.9
Q ss_pred eeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 215 kvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
+.+..+....+++.++|+||+|+|||+|+..+++....
T Consensus 41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45556655568899999999999999999999887643
No 33
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.67 E-value=5.7e-05 Score=74.59 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=39.8
Q ss_pred cccCCCcchhcccccceeeccceeeccccccC-----CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQ-----RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pig-----rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+...+|..++...+++.... .+...+..+ ....++|+||+|+|||||++.+++..
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~---~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKK---KLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHH---HHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHcCCccHHHccCcHHHHH---HHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34568888888888876543 344444433 22789999999999999999888764
No 34
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.66 E-value=0.00013 Score=71.34 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=58.2
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcC-c-EEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeE
Q 014249 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG-G-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKC 294 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~-~-~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~t 294 (428)
+...+.-..++.++|+|++|+|||+|+..+++.....+. + ..++..+.+. ....+++..+.+. ++..
T Consensus 36 l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~i~~~----l~~~------ 104 (386)
T 2qby_A 36 LAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI-DTPYRVLADLLES----LDVK------ 104 (386)
T ss_dssp SGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH-CSHHHHHHHHTTT----TSCC------
T ss_pred HHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC-CCHHHHHHHHHHH----hCCC------
Confidence 333333567889999999999999999998877644322 2 3355554332 2333444444322 1100
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHH
Q 014249 295 ALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (428)
Q Consensus 295 vvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A 343 (428)
......+...... .+.+++.. .++.++||+||++.+...
T Consensus 105 ---~~~~~~~~~~~~~------~l~~~l~~-~~~~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 105 ---VPFTGLSIAELYR------RLVKAVRD-YGSQVVIVLDEIDAFVKK 143 (386)
T ss_dssp ---CCSSSCCHHHHHH------HHHHHHHT-CCSCEEEEEETHHHHHHS
T ss_pred ---CCCCCCCHHHHHH------HHHHHHhc-cCCeEEEEEcChhhhhcc
Confidence 0000111111111 12233443 577899999999988643
No 35
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00011 Score=73.09 Aligned_cols=102 Identities=9% Similarity=0.015 Sum_probs=60.0
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhc-----CcEE-EEEeecCCcchHHHHHHHHHHccccccCccc
Q 014249 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQ 289 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~-----~~~~-V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~ 289 (428)
.|...+.-+++.++.|+||||||||+++..+++...... ..+. |+..+ .....-.+++.++.+.- . +.
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc-~~~~t~~~~~~~I~~~L-~--g~-- 108 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDA-LELAGMDALYEKIWFAI-S--KE-- 108 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEET-TCCC--HHHHHHHHHHH-S--CC--
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEec-cccCCHHHHHHHHHHHh-c--CC--
Confidence 344455568999999999999999999999988764321 1344 55544 33334444455554431 0 00
Q ss_pred CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEEeCchhHH
Q 014249 290 ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD---AEGQDVLLFIDNIFRFT 341 (428)
Q Consensus 290 ~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd---~~Gk~VLL~iDditRfa 341 (428)
+. +..++ .-.+-++|.. ..++.+++|+||++++.
T Consensus 109 ---~~-----~~~~~----------~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 109 ---NL-----CGDIS----------LEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp ---C-------CCCC----------HHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred ---CC-----CchHH----------HHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 00 00110 1123455543 24678999999999997
No 36
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.64 E-value=5.7e-05 Score=71.85 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+..++|+||||||||+|++.+++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 37
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.64 E-value=4.1e-05 Score=66.94 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=35.2
Q ss_pred CCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 196 EAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 196 ~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+|..++++.+++... +.+-..+.......++|+|++|+|||+|+..+++...
T Consensus 16 ~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEI---RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp HHTTCSCCCCSCHHHH---HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred HhccccchhhcchHHH---HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3455566666655432 2222222335678899999999999999999987653
No 38
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=2.2e-05 Score=76.56 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=42.4
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++.+|..++++.+++... +.+...+..++...++|+||||+|||+++..+++...
T Consensus 29 ~k~~p~~~~~i~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAV---TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHTCCSSTTTCCSCCTTH---HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHhhCCHHHH---HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456888899999988765 3444555555556699999999999999999987753
No 39
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.63 E-value=0.00011 Score=73.39 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=69.8
Q ss_pred ceeeccceeeccccc------cCCCceeEEECCCCCChhHHHHHHHHHHHhhc-CcEEEEEeecCCcchHHHHHHHHHHc
Q 014249 208 QILVTGIKVVDLLAP------YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGFSVFAGVGERTREGNDLYREMIES 280 (428)
Q Consensus 208 e~L~TGikvID~l~p------igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~-~~~~V~~giGeR~~Ev~dl~~el~e~ 280 (428)
+.+.||+.-+|.++- +.+| .+.|+|+||+|||||+..++.+..+.. ...++|.---+..+.. .+..-
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~l 78 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSM 78 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHT
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHh
Confidence 457799999999988 7788 899999999999999999988876543 4677886553333221 13333
Q ss_pred cccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH--HHhCCCcEEEEEeCchhHH
Q 014249 281 GVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF--RDAEGQDVLLFIDNIFRFT 341 (428)
Q Consensus 281 ~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyf--rd~~Gk~VLL~iDditRfa 341 (428)
|+. .++. +++ +.+ ..++. ++.+++.+ .. .++-.+||+|+|.-+.
T Consensus 79 Gvd-------~d~l-lv~-~~~--~~E~~-----~l~i~~~l~~i~-~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 79 GVD-------PERV-IHT-PVQ--SLEQL-----RIDMVNQLDAIE-RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TCC-------GGGE-EEE-ECS--BHHHH-----HHHHHHHHHTCC-TTCCEEEEEECSTTCB
T ss_pred CCC-------HHHe-EEE-cCC--CHHHH-----HHHHHHHHHHhh-ccCceEEEEecccccc
Confidence 321 1232 333 222 12332 12233332 12 5778999999997664
No 40
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.62 E-value=5.5e-05 Score=69.85 Aligned_cols=63 Identities=32% Similarity=0.459 Sum_probs=49.9
Q ss_pred ceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchH
Q 014249 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (428)
Q Consensus 208 e~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev 270 (428)
+-+.||+.-+|.++. +.+|+-+.|.|+||+|||+|+.+++.|.+......++|....+...++
T Consensus 10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~ 74 (251)
T 2zts_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDL 74 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHH
T ss_pred CeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHH
Confidence 457899999999987 789999999999999999999999877555444556666665554443
No 41
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.61 E-value=2.3e-05 Score=69.89 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=26.0
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
...+|+.++|+||+|+|||||+..+++...
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999887764
No 42
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.56 E-value=4.8e-05 Score=74.76 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=39.7
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCC-ceeEEECCCCCChhHHHHHHHHHHH
Q 014249 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+.+|..++++.+++... +.+...+..++. +.++|+|++|+|||+++..+++...
T Consensus 8 ~k~rp~~~~~~vg~~~~~---~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHTCCCSTTTSCSCHHHH---HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HhhCCCchhhccCcHHHH---HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356777888888887654 344444444553 3479999999999999998887653
No 43
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.55 E-value=0.00041 Score=63.79 Aligned_cols=43 Identities=28% Similarity=0.330 Sum_probs=38.6
Q ss_pred ceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 208 e~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.||+..+|.++ -+.+|+-++|+|++|+|||||+..++.+.
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56889999999998 47799999999999999999999988763
No 44
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.52 E-value=7.5e-05 Score=75.13 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
....++|+|++|||||+|++.+++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988765
No 45
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=5.6e-05 Score=74.39 Aligned_cols=47 Identities=15% Similarity=0.027 Sum_probs=34.2
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHHHHHHh---hcCcEEEEEe
Q 014249 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK---AHGGFSVFAG 262 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~---~~~~~~V~~g 262 (428)
.+...+..++.+..+|+||+|+|||+++..+++.... .|.++..+-.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~ 57 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP 57 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcC
Confidence 4445556677789999999999999999999875321 3567765543
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.50 E-value=7.6e-05 Score=72.87 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=37.5
Q ss_pred ccCCCcchhcccccceeeccceeecccccc-----CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 194 HREAPAFVEQATEQQILVTGIKVVDLLAPY-----QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pi-----grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
++.+|..++++.+++..... +..++.. .....++|+|++|||||+|++.+++.
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~---l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKN---LNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHH---HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred hccCCCCHHHhCChHHHHHH---HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46678888999998876532 2222222 33468999999999999999988765
No 47
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.48 E-value=5.4e-05 Score=72.60 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+..++|+||||||||+|+..+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36789999999999999999887653
No 48
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.45 E-value=5.1e-05 Score=73.77 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.-++|+||||||||+|++.+++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 346778999999999999998775
No 49
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.45 E-value=0.00012 Score=73.02 Aligned_cols=42 Identities=26% Similarity=0.199 Sum_probs=34.2
Q ss_pred ceeeccceeecccc-ccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 208 e~L~TGikvID~l~-pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
..+.||+.-+|.++ -+-+|..++|+|+||+|||+|+..++.+
T Consensus 104 ~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 104 GELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34668898899887 2336677899999999999999999876
No 50
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.43 E-value=0.00014 Score=66.20 Aligned_cols=57 Identities=28% Similarity=0.355 Sum_probs=44.1
Q ss_pred ceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecC
Q 014249 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (428)
Q Consensus 208 e~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGe 265 (428)
+.+.||+..+|.++. +.+|.-++|.|++|+|||||+..++....... .-++|.....
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~-~~v~~~~~~~ 61 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG-DPCIYVTTEE 61 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT-CCEEEEESSS
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC-CeEEEEEccc
Confidence 357799999999985 78999999999999999999999987665432 2334444433
No 51
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.42 E-value=0.00047 Score=67.86 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=38.0
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhc-------CcEEEEEeecCCcchHHHHHHHHHH
Q 014249 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-------GGFSVFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~-------~~~~V~~giGeR~~Ev~dl~~el~e 279 (428)
..+..-..++.++|+|++|+|||+|+..+++.....+ ....++..+.+......+++.++.+
T Consensus 37 ~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 105 (384)
T 2qby_B 37 RYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAG 105 (384)
T ss_dssp HHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHH
T ss_pred HHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHH
Confidence 3333445577899999999999999999988754331 2233555554322133444555443
No 52
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.42 E-value=0.00014 Score=67.22 Aligned_cols=45 Identities=31% Similarity=0.448 Sum_probs=39.1
Q ss_pred cceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 207 qe~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
-+.+.||+..+|.++ -+.+|+-++|.||+|+|||||+..++.+..
T Consensus 9 ~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 9 VRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp CCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456889999999988 688999999999999999999998885443
No 53
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.37 E-value=0.00013 Score=70.55 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=36.6
Q ss_pred cCCCcchhcccccceeeccce-eeccccc-cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 195 REAPAFVEQATEQQILVTGIK-VVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGik-vID~l~p-igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+|..++.+.+++.....++ .+..... -.....++|+|++|||||+|+..+++..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 456777787877765533211 1111111 1234789999999999999999887754
No 54
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.36 E-value=0.00011 Score=73.25 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.....++|+||+|||||+|+..+++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346689999999999999999887653
No 55
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.34 E-value=0.00019 Score=66.98 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
....++|+||||||||+|++.+++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999888754
No 56
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.33 E-value=0.00063 Score=67.65 Aligned_cols=57 Identities=25% Similarity=0.219 Sum_probs=45.2
Q ss_pred cceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHHHhh-----cCcEEEEEee
Q 014249 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGV 263 (428)
Q Consensus 207 qe~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~-----~~~~~V~~gi 263 (428)
.+.+.||+..+|.++ -+.+|.-+.|+|+||+|||+|+..++.+.... ...-++|...
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~ 164 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT 164 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 467889999999998 47789999999999999999999998874332 1334566654
No 57
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00014 Score=74.64 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.-++|+||||||||.||..+++...
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhC
Confidence 4599999999999999999988753
No 58
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.32 E-value=0.00015 Score=71.14 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.7
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++|+||||||||+||+.+++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3569999999999999999888764
No 59
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.31 E-value=0.00016 Score=71.26 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++|+||||||||+|+..+++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3679999999999999999888754
No 60
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.31 E-value=0.0006 Score=67.10 Aligned_cols=58 Identities=28% Similarity=0.323 Sum_probs=45.7
Q ss_pred cceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHHHhhc-----CcEEEEEeec
Q 014249 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVG 264 (428)
Q Consensus 207 qe~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~-----~~~~V~~giG 264 (428)
.+.+.||+..+|.++ -+.+|.-+.|+|+||+|||+|+..++.+..... ..-++|....
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 467889999999998 477899999999999999999999988754321 3345666553
No 61
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.28 E-value=0.00077 Score=66.85 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=56.7
Q ss_pred CCCceeEE--ECCCCCChhHHHHHHHHHHHhh----cCcE-EEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEE
Q 014249 224 QRGGKIGL--FGGAGVGKTVLIMELINNVAKA----HGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCAL 296 (428)
Q Consensus 224 grGqri~I--fG~~G~GKTtLa~~ii~n~~~~----~~~~-~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvv 296 (428)
..++.+.| +|++|+|||+|+..+++..... ..++ .+|+.+.+ .....++++++.+.- +...
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l----~~~~------- 115 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN-APNLYTILSLIVRQT----GYPI------- 115 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG-CCSHHHHHHHHHHHH----TCCC-------
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC-CCCHHHHHHHHHHHh----CCCC-------
Confidence 35677888 9999999999999988765432 1133 36666543 334556666665541 1100
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHH
Q 014249 297 VYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (428)
Q Consensus 297 v~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~ 342 (428)
.....+... . .-.+.+++.. .++.++||+||++.+..
T Consensus 116 --~~~~~~~~~-~-----~~~l~~~l~~-~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 116 --QVRGAPALD-I-----LKALVDNLYV-ENHYLLVILDEFQSMLS 152 (412)
T ss_dssp --CCTTCCHHH-H-----HHHHHHHHHH-HTCEEEEEEESTHHHHS
T ss_pred --CCCCCCHHH-H-----HHHHHHHHHh-cCCeEEEEEeCHHHHhh
Confidence 000111111 1 1122334443 47899999999998864
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.28 E-value=0.0011 Score=65.14 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=54.1
Q ss_pred CCCc--eeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecC
Q 014249 224 QRGG--KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (428)
Q Consensus 224 grGq--ri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~ 301 (428)
..+. .++|+|++|+|||+|+..+++..........++..+.. .....++++.+.+.- +.. ....
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~l----~~~---------~~~~ 105 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI-YRNFTAIIGEIARSL----NIP---------FPRR 105 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT-CCSHHHHHHHHHHHT----TCC---------CCSS
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc-CCCHHHHHHHHHHHh----Ccc---------CCCC
Confidence 4455 89999999999999999888765322112235555433 344556666655431 000 0000
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhH
Q 014249 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (428)
Q Consensus 302 d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRf 340 (428)
..+...-.. .+.+++.. .++.++||+||++.+
T Consensus 106 ~~~~~~~~~------~l~~~l~~-~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 106 GLSRDEFLA------LLVEHLRE-RDLYMFLVLDDAFNL 137 (389)
T ss_dssp CCCHHHHHH------HHHHHHHH-TTCCEEEEEETGGGS
T ss_pred CCCHHHHHH------HHHHHHhh-cCCeEEEEEECcccc
Confidence 111111111 12234444 678899999999887
No 63
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00017 Score=74.56 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.5
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..-++|+||||||||.||..+++...
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35699999999999999999988753
No 64
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.25 E-value=0.00072 Score=67.68 Aligned_cols=58 Identities=26% Similarity=0.461 Sum_probs=45.9
Q ss_pred cceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecC
Q 014249 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (428)
Q Consensus 207 qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGe 265 (428)
.+.+.||+..+|.++. +.+|.-+.|+|+||+|||||+..++.+..+. ..-++|....+
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~ 99 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEH 99 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 4578899999999976 4589999999999999999999998876543 34456655533
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00018 Score=74.34 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
...++|+||||||||.||..+++...
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999988753
No 66
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.23 E-value=0.00076 Score=67.93 Aligned_cols=55 Identities=31% Similarity=0.593 Sum_probs=44.5
Q ss_pred ceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEee
Q 014249 208 QILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (428)
Q Consensus 208 e~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~gi 263 (428)
+.+.||+..+|.++. +.+|.-+.|+||||+|||||+..++.+.... ..-++|..-
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~ 97 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDA 97 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 568899999999987 6689999999999999999999999876543 333455543
No 67
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00019 Score=74.10 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.-++|+||||||||.||..+++...
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCceECCCCchHHHHHHHHHHHhC
Confidence 4599999999999999999988753
No 68
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00027 Score=72.95 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.4
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.-++|+||||||||.||..+++..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999998875
No 69
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.17 E-value=0.00044 Score=68.22 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=26.2
Q ss_pred ccccccCCCce-eEEECCCCCChhHHHHHHHHHHH
Q 014249 218 DLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 218 D~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
...+..++... ++|+||+|+|||+++..+++...
T Consensus 15 ~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 15 VASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 33444566544 89999999999999999988753
No 70
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.17 E-value=0.0003 Score=63.77 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=36.0
Q ss_pred eeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHH
Q 014249 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 210 L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.||+..+|.++. +.+|.-++|.|++|+|||||+..++.
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999985 88999999999999999999998887
No 71
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.15 E-value=0.0004 Score=63.90 Aligned_cols=58 Identities=28% Similarity=0.384 Sum_probs=44.6
Q ss_pred ceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCC
Q 014249 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (428)
Q Consensus 208 e~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR 266 (428)
+.+.||+..+|.++ -+.+|.-++|.|+||+|||||+..++.+..+. ..-++|....+.
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~ 62 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEH 62 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSC
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCC
Confidence 35779999999986 46789999999999999999998888876543 333455554443
No 72
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.14 E-value=0.00044 Score=59.73 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.1
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
..+..++|+|++|||||++|+.+.+.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999877654
No 73
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.13 E-value=0.00022 Score=71.23 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++|+||||||||+||+.+++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3569999999999999999888765
No 74
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.13 E-value=0.0018 Score=63.18 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=39.3
Q ss_pred cceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 207 qe~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.+.||+..+|.++ -+.+|.-+.|+|+||+|||+|+..++.+.
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999998 46789999999999999999999998764
No 75
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.12 E-value=0.00086 Score=67.43 Aligned_cols=56 Identities=21% Similarity=0.388 Sum_probs=45.2
Q ss_pred cceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEee
Q 014249 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (428)
Q Consensus 207 qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~gi 263 (428)
.+.+.||+..+|.++. +.+|.-+.|+|+||+|||+|+..++.+.++. ..-++|...
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~ 99 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDA 99 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeC
Confidence 4578899999999986 6699999999999999999999999886543 233455544
No 76
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.11 E-value=0.0014 Score=62.08 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=23.2
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.....++|+||+|||||+||..+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455789999999999999999888763
No 77
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.09 E-value=0.00017 Score=65.69 Aligned_cols=43 Identities=33% Similarity=0.335 Sum_probs=38.1
Q ss_pred ceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 208 e~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.||+..+|.++ -+.+|+.++|+||+|+|||||+..++...
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56889999999887 57899999999999999999999887653
No 78
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.09 E-value=0.00085 Score=70.59 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=42.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHH---HHHhhcCcEEEEEeecCCc-chHHHHHHHHHHc
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELIN---NVAKAHGGFSVFAGVGERT-REGNDLYREMIES 280 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~---n~~~~~~~~~V~~giGeR~-~Ev~dl~~el~e~ 280 (428)
...-+.|+|++|+||||||..+.+ ...+.+.+..+|+.+++.. ....++++++.+.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 346789999999999999998886 2234556888898887654 3566777777665
No 79
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.00032 Score=73.10 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
...-++|+||||||||.||..+++...
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 345699999999999999999988753
No 80
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.03 E-value=0.001 Score=67.12 Aligned_cols=58 Identities=29% Similarity=0.455 Sum_probs=46.3
Q ss_pred cceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecC
Q 014249 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (428)
Q Consensus 207 qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGe 265 (428)
.+.+.||+..||.++. +.+|.-+.|+|+||+|||+|+..++.+.++. ..-++|....+
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~ 112 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEH 112 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 4578899999999986 5688999999999999999999999887543 33455655533
No 81
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.00 E-value=0.00017 Score=68.81 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+..++|+||||||||+|++.+++..
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999888765
No 82
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.00025 Score=74.32 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=39.0
Q ss_pred cccCCCcchhcccccceeeccceeecccccc-----------------CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPY-----------------QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pi-----------------grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++.+|..++++.+++..... +..++.. +....++|+||||||||+|+..+++..
T Consensus 30 ~ekyrP~~~~dliG~~~~~~~---L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 30 TVKYAPTNLQQVCGNKGSVMK---LKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp HHHTCCSSGGGCCSCHHHHHH---HHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCHHHhcCCHHHHHH---HHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 556788888888888765432 2222211 134789999999999999999887754
No 83
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.86 E-value=0.0042 Score=63.42 Aligned_cols=46 Identities=33% Similarity=0.347 Sum_probs=40.0
Q ss_pred ccceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 206 EQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 206 ~qe~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
....+.||+..+|.++ -+.+|.-+.|+|++|+|||||+..++.+..
T Consensus 156 ~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 156 ELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp TSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 3568899999999998 577899999999999999999998876543
No 84
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.85 E-value=0.00042 Score=67.77 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=44.3
Q ss_pred cccCCCcchhcccccceeeccceeecccc-ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 193 IHREAPAFVEQATEQQILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~-pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++.+|..++++.+++... +.+...+ ..+++..++|+||+|+||||++..+++..
T Consensus 5 ~~kyrP~~~~~~vg~~~~~---~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELT---NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHH---HHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred hhccCCCCHHHhcCCHHHH---HHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3566888999999988765 4555666 67777779999999999999999888754
No 85
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.83 E-value=0.0011 Score=73.63 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=36.8
Q ss_pred CCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 196 EAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 196 ~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+|..++.+.+++.... ++++.+ .-.+...++|+|+||||||+|+..+++...
T Consensus 164 ~r~~~ld~viGr~~~i~--~l~~~l-~~~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIR--RVIQIL-LRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp HHTTCSCCCCSCHHHHH--HHHHHH-HCSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred HhcCCCcccCCcHHHHH--HHHHHH-hcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 35666777777664332 233322 235667899999999999999999988754
No 86
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.79 E-value=0.00027 Score=68.61 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+..++|+||||||||+|+..+++..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999888653
No 87
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.76 E-value=0.0029 Score=60.58 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..+..++|+||||||||+|+..+++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999998887754
No 88
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.75 E-value=0.00036 Score=69.52 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.9
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++|+||||||||+|++.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999888654
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.75 E-value=0.002 Score=76.40 Aligned_cols=115 Identities=17% Similarity=0.283 Sum_probs=73.0
Q ss_pred cccceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcc
Q 014249 205 TEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (428)
Q Consensus 205 ~~qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~ 281 (428)
...+.+.||+..+|.++. +.+|..+.|+|+||+|||+|+..++.+..+. ..-++|....+...+.. +...+
T Consensus 10 ~~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~-G~~vlYI~te~~~~~l~-----~~~lg 83 (1706)
T 3cmw_A 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLG 83 (1706)
T ss_dssp --CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHH-----HHHTT
T ss_pred ccCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC-CCceEEEEecCccHHHH-----HHhhc
Confidence 345678999999999975 7889999999999999999999998876543 34568887766544432 11222
Q ss_pred ccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHH
Q 014249 282 VIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (428)
Q Consensus 282 ~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A 343 (428)
. ..++.. +... + ..+++ ..+.+.+.. .++.-+||+|+++-+...
T Consensus 84 ~-------dl~~i~-i~~p-~--t~e~l------~~ll~~L~~-~~~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 84 V-------DIDNLL-CSQP-D--TGEQA------LEICDALAR-SGAVDVIVVDSVAALTPK 127 (1706)
T ss_dssp C-------CGGGCE-EECC-S--SHHHH------HHHHHHHHH-HTCCSEEEESCSTTCCCH
T ss_pred c-------Ccccee-eecc-C--cHHHH------HHHHHHHHh-ccCCCEEEEcchhhhccc
Confidence 1 011222 2221 1 12222 233444543 356779999999876554
No 90
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=96.74 E-value=0.00054 Score=48.30 Aligned_cols=51 Identities=53% Similarity=0.683 Sum_probs=34.2
Q ss_pred ChhhhHhHHhhhhhcccCCC--CCCCCCCc-cCCCcccccCCcchhhhhhhHhh
Q 014249 1 MASRRLLSSLLRSSVRRSPS--KSSLSNSS-VFSPAATRRASPYGHLLSRVSEY 51 (428)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 51 (428)
|++||+|++++|.+..++.- .-++-||- .+..++.++++|.|.+++|+.+|
T Consensus 1 masrrllasllrqsaqrggglisrslgnsipksasrassraspkgfllnravqy 54 (54)
T 1pyv_A 1 MASRRLLASLLRQSAQRGGGLISRSLGNSIPKSASRASSRASPKGFLLNRAVQY 54 (54)
T ss_dssp -CCSHHHHHHHHHHHTTSSCSSSSTGGGGTTTTSTTTSTTCSHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHhCCceeehhhcccCcchhhhhhcccCccchhhhhhhcC
Confidence 89999999999998777321 11122221 13344578899999999998765
No 91
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.68 E-value=0.0014 Score=78.64 Aligned_cols=111 Identities=19% Similarity=0.346 Sum_probs=71.9
Q ss_pred ccceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccc
Q 014249 206 EQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGV 282 (428)
Q Consensus 206 ~qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~ 282 (428)
..+.+.||+.-+|.++. +-+|..+.|+||||||||+|+..++.+.++ ...-++|...-+..... + +...|+
T Consensus 1404 ~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-~G~~v~Fi~~e~~~~~l---~--a~~~G~ 1477 (2050)
T 3cmu_A 1404 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPI---Y--ARKLGV 1477 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCCCHH---H--HHHTTC
T ss_pred ccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEEcccccCHH---H--HHHcCC
Confidence 35789999999999988 779999999999999999999999887654 45556776654432222 1 222231
Q ss_pred cccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhH
Q 014249 283 IKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (428)
Q Consensus 283 ~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRf 340 (428)
+ .++ +.+.+.+ | .+ .++.+.+.+.. +++--+||+|++.-|
T Consensus 1478 -d------l~~--l~v~~~~-~-~E------~~l~~~~~lvr-~~~~~lVVIDsi~al 1517 (2050)
T 3cmu_A 1478 -D------IDN--LLCSQPD-T-GE------QALEICDALAR-SGAVDVIVVDSVAAL 1517 (2050)
T ss_dssp -C------TTT--CEEECCS-S-HH------HHHHHHHHHHH-HTCCSEEEESCGGGC
T ss_pred -C------chh--ceeecCC-h-HH------HHHHHHHHHHh-cCCCCEEEEcChhHh
Confidence 1 111 2333444 2 23 23334554443 466779999999643
No 92
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.67 E-value=0.0011 Score=62.30 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..++|+|++|||||+|++.+++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 359999999999999999888754
No 93
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.62 E-value=0.001 Score=62.25 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=21.5
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+| ++|+||+|||||||++.++...
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 3445 9999999999999999887653
No 94
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.61 E-value=0.00058 Score=70.28 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.7
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++|+||||||||+|+..+++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999887653
No 95
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.60 E-value=0.00094 Score=69.87 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.....++|+|+||||||+|++.+++.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 44567999999999999999988664
No 96
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.59 E-value=0.00081 Score=71.09 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=27.5
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++.+..-.+|..++|+||||||||||++.++...
T Consensus 99 l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 99 VQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3444444589999999999999999999888765
No 97
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.58 E-value=0.00072 Score=74.89 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
.-++|+||||||||+|++.+++.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988764
No 98
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.54 E-value=0.0016 Score=68.07 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.4
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++|+||||||||+|++.++...
T Consensus 51 gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 39999999999999999888754
No 99
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.54 E-value=0.0055 Score=58.52 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..++|+||+|||||+++..+++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 5799999999999999998887653
No 100
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.53 E-value=0.002 Score=61.85 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=39.4
Q ss_pred ceeec-cceeecccc-ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcC
Q 014249 208 QILVT-GIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG 255 (428)
Q Consensus 208 e~L~T-GikvID~l~-pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~ 255 (428)
.-+.| |+.++|.+. .+.+|+-++|.|++|+|||||+..++.+.....+
T Consensus 15 ~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 15 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp CCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred CCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 34667 888888775 6789999999999999999999999888754433
No 101
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.53 E-value=0.0054 Score=58.97 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=21.3
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
..+| ++|+||||||||||+..++..
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 4455 999999999999999988764
No 102
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.47 E-value=0.00077 Score=69.41 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=32.0
Q ss_pred hhcccccceeeccceeeccccccC--CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 201 VEQATEQQILVTGIKVVDLLAPYQ--RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 201 ler~~~qe~L~TGikvID~l~pig--rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++++.+++.....++.+=.++..+ .+..++|+||||||||+||..+++..
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 456666665533222111122222 34679999999999999999998875
No 103
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.45 E-value=0.0031 Score=60.68 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
|+.+.|+|++|+|||+|+..+++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 488999999999999999988764
No 104
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.44 E-value=0.0044 Score=64.95 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH---HhhcCcEEEEEeecCC
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV---AKAHGGFSVFAGVGER 266 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~---~~~~~~~~V~~giGeR 266 (428)
+..+-++|+|++|+|||||+..+++.. ...+.+...|+.+++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 445678999999999999999887643 3345556677777654
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.42 E-value=0.0053 Score=73.81 Aligned_cols=111 Identities=17% Similarity=0.277 Sum_probs=77.1
Q ss_pred ccceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccc
Q 014249 206 EQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGV 282 (428)
Q Consensus 206 ~qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~ 282 (428)
..+.+.||+..+|.++- +.+|..++|+|+||||||+|+..++.+..+. +..++|....+...++. ....|+
T Consensus 1058 ~~~~i~TGi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~-Ge~~~Fit~ee~~~~L~-----a~~~G~ 1131 (2050)
T 3cmu_A 1058 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGV 1131 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH-----HHHTTC
T ss_pred ccccccCCcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEccccHHHHH-----HHHcCC
Confidence 35678899999999984 7799999999999999999999999876543 66778888877655553 222231
Q ss_pred cccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhH
Q 014249 283 IKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (428)
Q Consensus 283 ~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRf 340 (428)
+ .++-. +. +.+. ...+..+.+.+.. .++--+||+|++.-+
T Consensus 1132 -d------l~~l~-~~-~pd~--------~e~~~~i~~~l~~-~~~~dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1132 -D------IDNLL-CS-QPDT--------GEQALEICDALAR-SGAVDVIVVDSVAAL 1171 (2050)
T ss_dssp -C------TTTCE-EE-CCSS--------HHHHHHHHHHHHH-HTCCSEEEESCGGGC
T ss_pred -C------hhHhe-ee-cCcc--------hHHHHHHHHHHHH-hCCCCEEEECCcccc
Confidence 1 11111 22 2221 1344556666665 577789999999866
No 106
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.42 E-value=0.0019 Score=61.48 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.7
Q ss_pred eEEECCCCCChhHHHHHHHHHH
Q 014249 229 IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++|+||+|+|||||++.++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999887653
No 107
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.42 E-value=0.0015 Score=58.06 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=23.9
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
|..+.+|..++|.|++|+|||||+..++.
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 56788999999999999999999988864
No 108
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.40 E-value=0.0024 Score=62.62 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=45.3
Q ss_pred ceeeccceeeccccc-cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCC
Q 014249 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (428)
Q Consensus 208 e~L~TGikvID~l~p-igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR 266 (428)
..+.||+..+|.++- +.+|.-++|.|+||+|||+|+..++.+.+... .-++|...-+.
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE~s 107 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLEMG 107 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESSSC
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECCCC
Confidence 467799999999873 67899999999999999999999998876543 33455554443
No 109
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=96.39 E-value=0.056 Score=51.98 Aligned_cols=68 Identities=10% Similarity=-0.035 Sum_probs=52.7
Q ss_pred eeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcc
Q 014249 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (428)
Q Consensus 210 L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~ 281 (428)
+.|||.-+|.++. +-+|..++|.|+||+|||+|+.+.+.+.++ .++.++|....|...++ ++.+..-|
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~-~Ge~~~~~~~~e~~~~l---~~~~~~~G 72 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK-SDNLVGMFSISYPLQLI---IRILSRFG 72 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH-TTCEEEEEECSSCHHHH---HHHHHHTT
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH-CCCcEEEEEEeCCHHHH---HHHHHHcC
Confidence 5689999999874 457889999999999999999998887654 47889999888866665 44444433
No 110
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.36 E-value=0.0019 Score=58.50 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=23.6
Q ss_pred eeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 210 LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 210 L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
|.++.-..+.|.+..+|..++|.|++|+|||||+..++...
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45556667778888899999999999999999999887643
No 111
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.36 E-value=0.0051 Score=67.01 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=36.9
Q ss_pred CCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 196 EAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 196 ~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+|..++.+.+++.... ++++ .+...++..++|+|+||||||+|+..+++...
T Consensus 180 ~~~~~~d~~iGr~~~i~--~l~~-~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELE--RAIQ-VLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp HHTTCSCCCCSCHHHHH--HHHH-HHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhcCCCCCccCCHHHHH--HHHH-HHhccCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 35556666666665432 2233 33345788999999999999999998887653
No 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.35 E-value=0.012 Score=67.16 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=37.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH--HHhhcCcEEEEEeecCCcchHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN--VAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n--~~~~~~~~~V~~giGeR~~Ev~dl~~el~e 279 (428)
...-++|+|++|+||||||..+.+. ....|..-+.|+.+++... ..++++.+.+
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d-~~~IL~~Ll~ 204 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQK 204 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS-HHHHHHHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC-HHHHHHHHHH
Confidence 3567899999999999999988863 3334444467888877543 4455555544
No 113
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.34 E-value=0.0065 Score=53.82 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIME 245 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ 245 (428)
+.+.+|.-++|.|++|+|||||+..
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 3567899999999999999999984
No 114
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.22 E-value=0.00045 Score=68.60 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
....++|+||||||||++|+.+++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999887654
No 115
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.22 E-value=0.0043 Score=59.16 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=37.1
Q ss_pred cceeeccceeeccccc-cCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 207 QQILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 207 qe~L~TGikvID~l~p-igrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.+.+.||+..+|.++. +-+|.-++|+|++|+|||||+..++...+.
T Consensus 10 ~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 10 LEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp HHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4567778887877763 458999999999999999999999876543
No 116
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.16 E-value=0.005 Score=57.89 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+..++|+|++|||||+|++.+.+..
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 45789999999999999998887653
No 117
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.10 E-value=0.0047 Score=63.53 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=44.6
Q ss_pred ceeeccceeecccc-ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEee
Q 014249 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (428)
Q Consensus 208 e~L~TGikvID~l~-pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~gi 263 (428)
..+.||+..+|.++ -+.+|.-++|.|+||+|||||+..++.+.+...+.-++|...
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 45778999999987 367899999999999999999999999876544333444444
No 118
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.05 E-value=0.0022 Score=64.02 Aligned_cols=45 Identities=31% Similarity=0.305 Sum_probs=39.7
Q ss_pred ccceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 206 EQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 206 ~qe~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+.+.||+..+|.++ -+.+|.-+.|+|++|+|||||+..++.+.
T Consensus 109 ~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 109 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567889999999995 57799999999999999999999988765
No 119
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.95 E-value=0.013 Score=69.67 Aligned_cols=111 Identities=19% Similarity=0.311 Sum_probs=71.6
Q ss_pred cceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcccc
Q 014249 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (428)
Q Consensus 207 qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~ 283 (428)
.+.+.||+.-+|.++. +.+|.-+.|+|+||+|||+|+..++.+.++. ...++|...-+..... + +...++
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~~---~--a~~lGv- 433 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPI---Y--ARKLGV- 433 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHH---H--HHHTTC-
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHHH---H--HHHcCC-
Confidence 4678999999999987 7799999999999999999999999887653 4556777665444432 1 223332
Q ss_pred ccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHH
Q 014249 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (428)
Q Consensus 284 ~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa 341 (428)
+ .++-. + .+.+ ..++.+ .+++.+.. .++--+||+|+++-+.
T Consensus 434 d------~~~L~-i-~~~~--~~e~~l------~~l~~lv~-~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 434 D------IDNLL-C-SQPD--TGEQAL------EICDALAR-SGAVDVIVVDSVAALT 474 (1706)
T ss_dssp C------GGGCE-E-ECCS--SHHHHH------HHHHHHHH-HTCCSEEEESCSTTCC
T ss_pred C------HHHeE-E-cCCC--CHHHHH------HHHHHHHH-hcCCCEEEECCHHHhh
Confidence 1 11222 2 2222 233332 33444433 3455589999998654
No 120
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.93 E-value=0.018 Score=55.35 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.6
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.|+|++|+|||+|+..+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999888764
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.87 E-value=0.0042 Score=54.29 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+|+.++|+|++|+|||||+..+++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998887653
No 122
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.86 E-value=0.0062 Score=62.45 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=43.2
Q ss_pred ceeeccceeeccccc-cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEee
Q 014249 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (428)
Q Consensus 208 e~L~TGikvID~l~p-igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~gi 263 (428)
..+.||+..+|.++- +.+|.-++|.|+||+|||+|+..++.+.+..+..-++|...
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 457789999999883 66899999999999999999999999877543333445444
No 123
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.80 E-value=0.0085 Score=61.79 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=47.8
Q ss_pred ceeeccceeeccccc-cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchH
Q 014249 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (428)
Q Consensus 208 e~L~TGikvID~l~p-igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev 270 (428)
..+.||+.-+|.++- +.+|.-++|.|+||+|||+|+..++.+.+.. ..-++|...-+...++
T Consensus 178 ~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql 240 (444)
T 3bgw_A 178 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKEN 240 (444)
T ss_dssp CSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHH
T ss_pred CCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHH
Confidence 457789999999884 6789999999999999999999999998764 3334555554444443
No 124
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.73 E-value=0.0023 Score=70.91 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++|+||||||||.||..+++..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh
Confidence 3569999999999999999888654
No 125
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.70 E-value=0.0024 Score=70.65 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.4
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+..+..++|+||||||||+|++.++...
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3467889999999999999999998765
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.68 E-value=0.011 Score=52.94 Aligned_cols=26 Identities=42% Similarity=0.598 Sum_probs=23.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
+.++|+|++|+|||+|+..+++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999988877643
No 127
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.68 E-value=0.0045 Score=68.52 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.5
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+..+..++|+||||||||||++.++..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 467889999999999999999888654
No 128
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.65 E-value=0.0079 Score=67.65 Aligned_cols=43 Identities=26% Similarity=0.472 Sum_probs=31.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH---HhhcCcEEEEEeecCC
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV---AKAHGGFSVFAGVGER 266 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~---~~~~~~~~V~~giGeR 266 (428)
+....+.|+|++|+||||||..++++. ...+.+.+.|+.+++.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 344568899999999999999887653 2235566678888764
No 129
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.61 E-value=0.007 Score=54.14 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.0
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+|.-++|.||+|+|||||+..++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 357899999999999999999887653
No 130
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.61 E-value=0.0083 Score=62.82 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=40.0
Q ss_pred cceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHH-HHHHhhcCcEEEEEe
Q 014249 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELI-NNVAKAHGGFSVFAG 262 (428)
Q Consensus 207 qe~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii-~n~~~~~~~~~V~~g 262 (428)
.+.+.||+.++|.+. .+.+|+..+|.|++|+|||||+..++ ..... ...-+||..
T Consensus 18 ~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~ 75 (525)
T 1tf7_A 18 IAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVT 75 (525)
T ss_dssp CCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred cccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEE
Confidence 356678889998764 57799999999999999999999863 33322 223345543
No 131
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.61 E-value=0.0064 Score=55.32 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=22.8
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
++.+|+.++|+||+|+|||||+..|+.-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999999877654
No 132
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.61 E-value=0.0085 Score=59.86 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=39.9
Q ss_pred ceeeccceeecccc-ccCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 208 e~L~TGikvID~l~-pigrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.-+.||+.-+|.++ -+.+|.-++|.|+||+|||+|+..++.+.+.
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45778999999987 4788999999999999999999999998765
No 133
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.58 E-value=0.0079 Score=54.29 Aligned_cols=29 Identities=28% Similarity=0.204 Sum_probs=23.7
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.+|..+.|.|++|+||||++..++...
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999988654
No 134
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.53 E-value=0.0067 Score=63.00 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=46.3
Q ss_pred ceeec-cceeeccccc-cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCC
Q 014249 208 QILVT-GIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (428)
Q Consensus 208 e~L~T-GikvID~l~p-igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR 266 (428)
..+.| |+..+|.++- +.+|.-++|.|+||+|||+|+.+++.+.+..+..-++|...-+.
T Consensus 222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 45778 9999999874 56888999999999999999999999887654444555555443
No 135
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.49 E-value=0.007 Score=55.90 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=22.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.||+|+|||||+..|+..
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45778999999999999999999888754
No 136
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.44 E-value=0.01 Score=53.00 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.2
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+..++..++|.|++|+||||++..++..
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4557889999999999999999888764
No 137
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.44 E-value=0.0062 Score=63.92 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.8
Q ss_pred eEEECCCCCChhHHHHHHHHHH
Q 014249 229 IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++|+||||||||+|++.++...
T Consensus 67 vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999887653
No 138
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.41 E-value=0.004 Score=60.46 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=34.4
Q ss_pred CCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 196 EAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 196 ~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+|..++.+.+++.+.. .+-...-....+.++|+|+||||||+|++.+++..
T Consensus 18 ~~~~~f~~i~G~~~~~~---~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKL---ALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CCCCCGGGSCSCHHHHH---HHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCCCCchhccChHHHHH---HHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 35566777777776432 22111112234569999999999999999887753
No 139
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.41 E-value=0.013 Score=57.03 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.....++|+|++|||||++|+.+.+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 34678999999999999999887764
No 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.39 E-value=0.0094 Score=53.27 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=22.9
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+|..++|.|++|+|||||+..+...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999887653
No 141
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.36 E-value=0.075 Score=57.75 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.3
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..++|+||+|||||+|++.+++..
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 379999999999999999888765
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.23 E-value=0.01 Score=53.96 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.7
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+|..++|.|++|+|||||+..|....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998887654
No 143
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.22 E-value=0.007 Score=62.58 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=38.2
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..+|..++.+++++.... ++++.+ .-....+++|+|+||||||+|+..+++...
T Consensus 173 ~~r~~~ld~iiGr~~~i~--~l~~~l-~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQ--RVIEVL-SRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HTTSSCSCCCCCCHHHHH--HHHHHH-HCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHhcCCCCCccCcHHHHH--HHHHHH-hccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 346667777777765442 223322 225677899999999999999999988753
No 144
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.20 E-value=0.011 Score=52.51 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+|.-++|.||+|+|||||+..+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5788999999999999999888764
No 145
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.17 E-value=0.011 Score=51.36 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+..++|.|++|+|||||+..++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999888754
No 146
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.15 E-value=0.021 Score=55.70 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=24.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.++.++|+||+|||||+|+..+++...
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988765
No 147
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.09 E-value=0.026 Score=49.99 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=26.0
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+|.-....+|..+.|.|++|+||||++..++....
T Consensus 4 ~~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp ----CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34433445788899999999999999999887654
No 148
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.06 E-value=0.014 Score=51.76 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=26.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.+|+.++|.||.|+|||||++.|+...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356889999999999999999999887653
No 149
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.06 E-value=0.0069 Score=64.61 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=41.4
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...+|..++...+++++. +.+... +..|+.++|+||+|||||||++.|+...
T Consensus 33 ~~~rp~~l~~i~G~~~~l---~~l~~~--i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAV---EVIKTA--ANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp SCCCSSHHHHCCSCHHHH---HHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccccccccceEECchhhH---hhcccc--ccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 367888999999998776 344444 4566899999999999999999887653
No 150
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.99 E-value=0.013 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+|..++|.|++|+||||++..++...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999887653
No 151
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.98 E-value=0.027 Score=50.55 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=26.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHhhcCcE
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF 257 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~ 257 (428)
.+|..++|.|++|+||||++..++......+.++
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4678899999999999999999987654333343
No 152
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.96 E-value=0.012 Score=55.45 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=24.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.||+|+|||||+..|+
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 578999999999999999999998765
No 153
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.92 E-value=0.015 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+|..++|.|++|+|||||+..++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46789999999999999999888754
No 154
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.91 E-value=0.023 Score=54.28 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=28.8
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+++.+. +.+|+.++|.||+|+|||||+..++....
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 445555 78999999999999999999988876543
No 155
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.88 E-value=0.014 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+|+.++|.||+|+|||||+..+....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999998887643
No 156
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.86 E-value=0.013 Score=55.21 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=25.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4788999999999999999999987754
No 157
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.86 E-value=0.089 Score=48.60 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=61.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecC-CcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCC
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE-RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGe-R~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p 304 (428)
-+.+.+|+|+|.||||+|.-++...+..-..+.++-.+.- ....-.++++.+ + ++...- ....+ - ..+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L---~-v~~~~~-g~gf~----~-~~~~ 97 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH---G-VEFQVM-ATGFT----W-ETQN 97 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG---T-CEEEEC-CTTCC----C-CGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC---C-cEEEEc-ccccc----c-CCCC
Confidence 3689999999999999999888775433223445544331 111112233333 1 110000 00111 0 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchh-----HHHHHHHhHHhcCCCC
Q 014249 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR-----FTQANSEVSALLGRIP 355 (428)
Q Consensus 305 ~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditR-----fa~A~reis~llgr~p 355 (428)
.......+.-++..+..... .++.-|||+||+.. |-.....+..+..||+
T Consensus 98 ~~~~~~~a~~~l~~a~~~l~-~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~ 152 (196)
T 1g5t_A 98 READTAACMAVWQHGKRMLA-DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG 152 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT
T ss_pred cHHHHHHHHHHHHHHHHHHh-cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC
Confidence 22344555666666644433 47778999999953 3333444555555544
No 158
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.85 E-value=0.027 Score=50.74 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=25.1
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..+|..+.|.|++|+|||||+..++....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999887653
No 159
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.79 E-value=0.031 Score=50.12 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=24.9
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.+|..++|.|++|+||||++..++.....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999876543
No 160
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.78 E-value=0.015 Score=57.24 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=27.0
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-+.+.+|+.++|+||+|+|||||+..|+.-.
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3578999999999999999999998887543
No 161
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.77 E-value=0.019 Score=50.46 Aligned_cols=27 Identities=41% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++..++|.|++|+||||++..++...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999887653
No 162
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.75 E-value=0.012 Score=54.33 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=19.4
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHH-HH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELI-NN 249 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii-~n 249 (428)
.+.+|.-++|.||+|+|||||+..++ ..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC--
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999998887 43
No 163
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.73 E-value=0.012 Score=54.94 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.||+|+|||||+..|+
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999999998765
No 164
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.73 E-value=0.014 Score=55.81 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|+||+|+|||||+..|+-
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4788999999999999999999987653
No 165
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.70 E-value=0.016 Score=52.09 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=20.4
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++|.|++|+|||||+..|+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999998887654
No 166
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.70 E-value=0.13 Score=50.49 Aligned_cols=30 Identities=23% Similarity=0.119 Sum_probs=26.0
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
..++..++|.|++|+||||++..++...+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 467888999999999999999999877654
No 167
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.68 E-value=0.02 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.247 Sum_probs=22.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+..++|.|++|+||||++..++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999988654
No 168
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.67 E-value=0.018 Score=55.28 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=25.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4788999999999999999999987754
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.65 E-value=0.017 Score=52.15 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=23.1
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+|..++|.|++|+|||||+..++...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998887643
No 170
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.62 E-value=0.017 Score=54.73 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=25.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999999987754
No 171
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.61 E-value=0.022 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
|..+.|.|++|+||||++..++...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999988754
No 172
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.61 E-value=0.014 Score=55.23 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=24.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4788999999999999999999987653
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.59 E-value=0.011 Score=52.93 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=27.9
Q ss_pred eeeccccccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 215 kvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+++. +++.+|.+++|.|++|+|||||+..+..
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45555 7899999999999999999999976653
No 174
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.57 E-value=0.022 Score=51.50 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.8
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
..+|.-++|.|++|+|||||+..++..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 467889999999999999999888764
No 175
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.56 E-value=0.016 Score=55.59 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=24.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.|++|+|||||+..|+
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHH
Confidence 478899999999999999999998765
No 176
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.56 E-value=0.021 Score=49.61 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-|.++|.|++|+||||++..++...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4899999999999999999888654
No 177
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.55 E-value=0.023 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+..+.|.|++|+||||+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999988764
No 178
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.55 E-value=0.019 Score=53.57 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=24.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.+|..++|.||+|+|||||+..++...
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998876643
No 179
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.55 E-value=0.015 Score=55.28 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=24.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.||+|+|||||+..|+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999999998765
No 180
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.52 E-value=0.018 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.3
Q ss_pred CceeEEECCCCCChhHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~ 248 (428)
|..++|.|++|+|||||+..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 56789999999999999998864
No 181
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.51 E-value=0.016 Score=54.54 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999999987753
No 182
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.48 E-value=0.015 Score=54.03 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=24.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.||+|+|||||+..|+-
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999987653
No 183
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.48 E-value=0.016 Score=55.67 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=27.3
Q ss_pred eeeccc-cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 215 KVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 215 kvID~l-~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
.+++.+ +.+.+|+.++|.||+|+|||||+..|+
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHT
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 344443 578899999999999999999998775
No 184
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.46 E-value=0.021 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=20.1
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++|.|++|+||||++..++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999887654
No 185
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.45 E-value=0.017 Score=54.09 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=24.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|+.|+|||||+..|+.
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999987754
No 186
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.45 E-value=0.018 Score=55.01 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.||.|+|||||+..|+
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999999998765
No 187
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.44 E-value=0.018 Score=54.95 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=25.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999999987753
No 188
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.44 E-value=0.017 Score=54.44 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=24.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.|++|+|||||+..|+
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999999998765
No 189
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.43 E-value=0.018 Score=53.99 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+...++|+||||||||+++..+++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44569999999999999998888754
No 190
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.43 E-value=0.018 Score=55.32 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4788999999999999999999987653
No 191
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.42 E-value=0.017 Score=55.93 Aligned_cols=27 Identities=33% Similarity=0.630 Sum_probs=24.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.||+|+|||||+..|+
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999999998765
No 192
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.41 E-value=0.017 Score=55.94 Aligned_cols=28 Identities=36% Similarity=0.411 Sum_probs=24.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4688999999999999999999987653
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.40 E-value=0.023 Score=51.72 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+|.-++|.||+|+|||||+..++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 46888999999999999999888754
No 194
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.39 E-value=0.24 Score=48.97 Aligned_cols=32 Identities=28% Similarity=0.251 Sum_probs=26.8
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
...+|.-++|.|++|+||||++..|+......
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34689999999999999999999888765433
No 195
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.36 E-value=0.02 Score=57.62 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=27.3
Q ss_pred eeec-cccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 215 KVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 215 kvID-~l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
.+++ .-+.+.+|+.++|+||+|+|||||+..|+
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHh
Confidence 4443 33578999999999999999999998776
No 196
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.36 E-value=0.022 Score=57.28 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=25.6
Q ss_pred cccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 219 ~l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
.-+.+.+|+.++|+||+|+|||||+..|+
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHH
Confidence 33578899999999999999999998776
No 197
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.36 E-value=0.028 Score=51.90 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=24.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.|.-+|.-++|.||+|+|||||+..+...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 35568999999999999999999888754
No 198
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.35 E-value=0.035 Score=60.57 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.1
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++|+||+|||||+||+.+++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999888765
No 199
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.34 E-value=0.022 Score=57.33 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=25.2
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
-+.+.+|+.++|+||+|+|||||+..|+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHh
Confidence 3578899999999999999999998776
No 200
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.33 E-value=0.022 Score=51.34 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=23.6
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+.+|..++|.|++|+|||||+..+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 467788999999999999999987764
No 201
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.31 E-value=0.026 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.6
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+..++|.|++|+||||++..++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999887643
No 202
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.30 E-value=0.023 Score=57.44 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=25.2
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
-+.+.+|+.++|+||+|+|||||+..|+
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHH
Confidence 3578899999999999999999998776
No 203
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.30 E-value=0.02 Score=54.74 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=24.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.|++|+|||||+..|+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 578899999999999999999998765
No 204
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.29 E-value=0.023 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
|.-++|.||+|+|||||+..+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999888754
No 205
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.29 E-value=0.021 Score=57.33 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=25.1
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
-+.+.+|+.++|+||+|+|||||+..|+
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999999999998776
No 206
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.29 E-value=0.024 Score=52.83 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++..++|+|++|+|||||+..|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999887543
No 207
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.28 E-value=0.028 Score=50.10 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+|..+.|.|++|+||||++..++....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987653
No 208
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.28 E-value=0.024 Score=51.62 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=22.9
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
|++++|.|++|+|||||+..++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 67899999999999999998887654
No 209
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.25 E-value=0.084 Score=46.54 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.1
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-++|.|++|+||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999888764
No 210
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.22 E-value=0.024 Score=57.48 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=27.3
Q ss_pred eeeccc-cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 215 KVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 215 kvID~l-~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
.+++.+ +.+.+|+.++|+||+|+|||||+..|+
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHH
Confidence 344333 578999999999999999999998776
No 211
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.19 E-value=0.035 Score=58.04 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=40.9
Q ss_pred cceeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEe
Q 014249 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (428)
Q Consensus 207 qe~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~g 262 (428)
-+.+.+|+.-+|.++ .+.+|..++|.|++|+|||||+..++..... .+.-++|..
T Consensus 260 ~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~ 316 (525)
T 1tf7_A 260 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFA 316 (525)
T ss_dssp CCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred cceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEE
Confidence 346677777777664 6789999999999999999999998876543 333334443
No 212
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.18 E-value=0.02 Score=54.52 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=24.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999999987653
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.12 E-value=0.057 Score=53.45 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=31.6
Q ss_pred eeccc-cccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEE
Q 014249 216 VVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259 (428)
Q Consensus 216 vID~l-~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V 259 (428)
+++.+ +.+.+|..++|.|++|+|||||+..++.........+.|
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i 88 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV 88 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEE
Confidence 44433 457899999999999999999998887654322334443
No 214
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.11 E-value=0.033 Score=50.76 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=22.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++..+.|.|++|+||||++..++...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999887654
No 215
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.10 E-value=0.022 Score=54.22 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.||+|+|||||+..|+-
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4688999999999999999999987653
No 216
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.09 E-value=0.019 Score=55.64 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=37.0
Q ss_pred cccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.+|...+.+.+++..... ++-. +..|..++|+||||||||+|++.+++..
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~--l~~~---l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINR--LLIG---ICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHH--HHHH---HHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccceeCcHHHHHH--HHHH---HHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 445667777777777765421 1112 2336799999999999999999887654
No 217
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.08 E-value=0.056 Score=48.82 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=24.8
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+..+|..++|.|++|+|||||+..+....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999998887654
No 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.06 E-value=0.031 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.1
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887653
No 219
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.05 E-value=0.028 Score=51.58 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.++..+.|.|++|+||||++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999888754
No 220
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.05 E-value=0.019 Score=57.42 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=24.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|+||+|+|||||+..|+
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHH
Confidence 578899999999999999999998776
No 221
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.04 E-value=0.023 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..++|+||||||||+|+..+++..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 349999999999999999888764
No 222
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.04 E-value=0.03 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=19.4
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
+++|.|++|+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888654
No 223
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.01 E-value=0.032 Score=48.97 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.3
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+..++|.|++|+||||++..++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999887653
No 224
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.01 E-value=0.024 Score=52.45 Aligned_cols=31 Identities=32% Similarity=0.316 Sum_probs=25.8
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
++|.+ .+|+.++|.|++|+|||||+..|+--
T Consensus 15 ~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 15 YVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44553 67999999999999999999887654
No 225
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.00 E-value=0.034 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++..++|.|++|+||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999887654
No 226
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.99 E-value=0.058 Score=52.69 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=26.8
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.+.+|..++|.|++|+||||++..++.....
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999988876543
No 227
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.98 E-value=0.027 Score=56.88 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=25.2
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
-+.+.+|+.++|+||+|+|||||+..|+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHH
Confidence 3578899999999999999999998776
No 228
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.97 E-value=0.033 Score=49.02 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++..+.|.|++|+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56778999999999999999887654
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.92 E-value=0.02 Score=62.52 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=37.8
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+|..++...+++.... ++++. +-..+..+++|+|+||||||+++..+++..
T Consensus 173 ~~~~~~ld~iiG~~~~i~--~l~~~-l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQ--RVIEV-LSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp HTTSSCSCCCCCCHHHHH--HHHHH-HHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHhhCCCCCccCchHHHH--HHHHH-HhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 346666777777765443 22222 223667789999999999999999998875
No 230
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.92 E-value=0.03 Score=48.59 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.0
Q ss_pred eeEEECCCCCChhHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+.|.|+||+||||++..++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999998876
No 231
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.91 E-value=0.063 Score=52.54 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++|+.++|.|++|+|||||+..++....
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999998887654
No 232
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.88 E-value=0.028 Score=48.09 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=17.5
Q ss_pred eeEEECCCCCChhHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMEL 246 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~i 246 (428)
-++|.|++|+||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999888
No 233
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.86 E-value=0.032 Score=51.88 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.4
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.-+|.-++|.||+|+|||||+..+...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 467899999999999999999887654
No 234
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.85 E-value=0.036 Score=49.34 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+|..+.|.|++|+||||++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5778999999999999999888754
No 235
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.85 E-value=0.029 Score=57.03 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=24.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.||+|+|||||++.|+
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHh
Confidence 478999999999999999999998776
No 236
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.81 E-value=0.04 Score=49.42 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=23.4
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-.++..++|.|++|+||||++..++...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456689999999999999999887654
No 237
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.77 E-value=0.037 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..++|.|++|+||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999887653
No 238
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.77 E-value=0.037 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.7
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++.|.|++|+||||++..++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999988754
No 239
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.76 E-value=0.017 Score=49.48 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=20.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.....++|+|++|||||++|+.+.+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCCcEEEECCCCccHHHHHHHHHH
Confidence 3457899999999999999976643
No 240
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.74 E-value=0.026 Score=60.30 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.9
Q ss_pred eeEEECCCCCChhHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~ 248 (428)
.++|+||||||||+||+.+++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 799999999999999987654
No 241
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.73 E-value=0.11 Score=45.37 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.3
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999888754
No 242
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.71 E-value=0.037 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.9
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++|+||||+||+|++..|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999998887653
No 243
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.71 E-value=0.028 Score=54.74 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=24.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|+.|+|||||+..|+.
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4688999999999999999999987653
No 244
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.67 E-value=0.038 Score=50.48 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++.++.|.|++|+||||++..++...
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999887654
No 245
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.65 E-value=0.028 Score=58.20 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++|+||||||||++++.++...
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999988764
No 246
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.65 E-value=0.036 Score=54.40 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=24.8
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+|..++|.|++|+|||||+..|..-.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 6889999999999999999998776644
No 247
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.64 E-value=0.035 Score=48.53 Aligned_cols=25 Identities=36% Similarity=0.316 Sum_probs=17.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
++..++|.|++|+||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999988754
No 248
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.63 E-value=0.031 Score=53.59 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+. |+.++|.|++|+|||||+..|+-
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 4677 99999999999999999987754
No 249
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.61 E-value=0.041 Score=48.38 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=23.0
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+|..++|.|++|+||||++..++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999887654
No 250
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.61 E-value=0.6 Score=43.68 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=34.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHhhc--CcEEEEEeecCCcchHHHHHHHHHHcc
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAH--GGFSVFAGVGERTREGNDLYREMIESG 281 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~~~--~~~~V~~giGeR~~Ev~dl~~el~e~~ 281 (428)
.+|.-+.|.|++|+||||++..+.......+ .++.|...--.++.+.-+.+++++..+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~ 82 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ 82 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC
Confidence 4788899999999999999999887764331 022232222223455556677776653
No 251
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.60 E-value=0.044 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.716 Sum_probs=20.4
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.|.|++|+||||++..++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58899999999999999888754
No 252
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.57 E-value=0.062 Score=56.40 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=26.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.+.+|..++|.|++|+|||||+..|+....
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 3578899999999999999999998887654
No 253
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.51 E-value=0.041 Score=48.14 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.0
Q ss_pred eeEEECCCCCChhHHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+.|.|++|+||||++..++....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987653
No 254
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.50 E-value=0.05 Score=48.64 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+...++|.|++|+||||++..++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44567899999999999999888754
No 255
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.49 E-value=0.023 Score=56.97 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=24.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|+||+|+|||||+..|+
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHH
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHh
Confidence 578899999999999999999998776
No 256
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.49 E-value=0.08 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.3
Q ss_pred eeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 228 KIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
++.+.|++||||||++..++...++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 58889999999999999998876543
No 257
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.48 E-value=0.048 Score=50.34 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++.++.|.|++|+||||++..++...
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999888654
No 258
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.47 E-value=0.066 Score=52.03 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=24.5
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+..+|..++|.|++|+|||||+..|....
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44889999999999999999998776543
No 259
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.47 E-value=0.047 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.5
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++|.|++|+|||||+..++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999887654
No 260
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.45 E-value=0.076 Score=47.83 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=23.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
+|+-..|+|++|+||||++..++++...
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667889999999999999888877543
No 261
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.45 E-value=0.045 Score=51.24 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++-+++|.|+||+||||++..++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 466789999999999999999887643
No 262
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.42 E-value=0.083 Score=49.20 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=25.4
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..+|..+.|.|++|+||||++..++....
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 55889999999999999999998887653
No 263
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.36 E-value=0.045 Score=49.95 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=22.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++..+.|.|++|+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999887654
No 264
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.35 E-value=0.039 Score=48.79 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++..++|.|++|+||||++..++...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999887654
No 265
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.34 E-value=0.045 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+|..++|.|++|+|||||+..++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999988754
No 266
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.34 E-value=0.045 Score=51.68 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+ +.++|.||+|+|||||+..|+-
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhC
Confidence 46788 9999999999999999987753
No 267
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.34 E-value=0.69 Score=42.61 Aligned_cols=54 Identities=20% Similarity=0.165 Sum_probs=35.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHc
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIES 280 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~ 280 (428)
+|.-+.|.|++|+||||++..+....... .+.|...---.+.+.-+.++++...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~v~~~~~p~~~~~g~~i~~~l~~ 58 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER--GIEVQLTREPGGTPLAERIRELLLA 58 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEESSCSSHHHHHHHHHHHS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcccccCCCCCHHHHHHHHHHhc
Confidence 57788999999999999999888766432 2333222112234555667777665
No 268
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.34 E-value=0.044 Score=55.32 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=27.4
Q ss_pred eeeccc-cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 215 KVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 215 kvID~l-~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
.+++.+ +.+.+|+.++|+|++|+|||||+..|.
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHh
Confidence 355443 588999999999999999999998665
No 269
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.30 E-value=0.034 Score=52.27 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=24.3
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+..++..++|.|+||+||||++..++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5567788999999999999999988764
No 270
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.26 E-value=0.81 Score=44.37 Aligned_cols=30 Identities=30% Similarity=0.158 Sum_probs=25.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
.++..+++.|++|+||||++..++...+..
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 348899999999999999999998776543
No 271
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.23 E-value=0.02 Score=56.36 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=28.4
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+|.|.++-+|+.++|.|++|+|||||+..|..
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 67788889999999999999999999977653
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.21 E-value=0.082 Score=53.09 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=26.4
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+.+|..++|.|+.|+|||||+..|+....
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 467899999999999999999998887654
No 273
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.20 E-value=0.037 Score=53.84 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=28.6
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+|.+...-.|+..+|.|++|+|||||+..|.
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 7888888999999999999999999998876
No 274
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.16 E-value=0.05 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.9
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
|.+++|.|++|+||||++..++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999999888654
No 275
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.08 E-value=0.089 Score=65.15 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
..++.++++||||||||+|+..++.+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHS
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 34689999999999999999766543
No 276
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.05 E-value=0.047 Score=48.84 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.1
Q ss_pred eeEEECCCCCChhHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~ 248 (428)
+++|.|++|+||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999988865
No 277
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.97 E-value=0.43 Score=49.24 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
+++..++|.|++|+||||++..++...++.
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 357789999999999999999999876543
No 278
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.91 E-value=0.085 Score=52.95 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=25.8
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.+|+.++|.||+|+|||||+..++....
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 67899999999999999999998887654
No 279
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.89 E-value=0.038 Score=54.30 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=25.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|..
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 4789999999999999999999987753
No 280
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.89 E-value=0.061 Score=51.92 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=23.7
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+..++.-++|.|+||+|||||+..++..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556778999999999999999988754
No 281
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.82 E-value=0.06 Score=48.88 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.2
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887653
No 282
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.81 E-value=0.048 Score=54.13 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.5
Q ss_pred cCC--CceeEEECCCCCChhHHHHHHHHH
Q 014249 223 YQR--GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 223 igr--Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+ |++++|.|++|+|||||+..|+..
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 355 899999999999999999888764
No 283
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.81 E-value=0.056 Score=48.53 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.6
Q ss_pred eeEEECCCCCChhHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~ 248 (428)
.++|.|++|+||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987754
No 284
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.80 E-value=0.064 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..++|.|++|+||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999887653
No 285
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.77 E-value=0.072 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=21.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+..-++|+||||+||+|++..|+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 444556789999999999998887653
No 286
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.75 E-value=0.93 Score=43.77 Aligned_cols=29 Identities=24% Similarity=0.097 Sum_probs=25.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
+|+.++|.|++|+||||++..++...+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 78999999999999999999998876543
No 287
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.73 E-value=0.068 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.3
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887653
No 288
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.67 E-value=0.067 Score=54.08 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=25.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|..++|.||+|+|||||+..++..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46778999999999999999999888753
No 289
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.66 E-value=0.082 Score=47.93 Aligned_cols=29 Identities=38% Similarity=0.423 Sum_probs=25.2
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...+|..+.|.|++|+||||++..+....
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999888764
No 290
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.61 E-value=0.16 Score=56.24 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.7
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..++|+||+|||||+||..+++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999888765
No 291
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.55 E-value=0.071 Score=46.61 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.1
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++|.|++|+||||++..++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999887643
No 292
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.53 E-value=0.059 Score=55.84 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.+|++++|.|+.|+|||||++.|+...
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 456799999999999999999998877643
No 293
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.50 E-value=0.066 Score=50.52 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.0
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-++|.|++|+|||||+..++...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 36899999999999999998654
No 294
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.45 E-value=0.064 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+|.+++|.|++|+|||||+..+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987764
No 295
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.38 E-value=0.046 Score=57.32 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
..|..++|+||||||||+||+.+++.
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHH
Confidence 45679999999999999999887654
No 296
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.35 E-value=0.08 Score=55.83 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=26.6
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+++.+..+.+|+.++|.|++|+|||||+..|+
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHH
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHh
Confidence 44444457899999999999999999998775
No 297
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.31 E-value=0.23 Score=55.88 Aligned_cols=32 Identities=16% Similarity=-0.063 Sum_probs=26.5
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
|.-+.+.+|+-++|.||.|+||||++..++..
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44456678999999999999999999988443
No 298
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.31 E-value=0.077 Score=47.14 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||||+..+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999888754
No 299
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.27 E-value=0.049 Score=52.83 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=27.6
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
|+.++..-.|+.++|.|++|+|||||+..|+
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 6777888899999999999999999997665
No 300
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.27 E-value=0.08 Score=54.25 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.9
Q ss_pred eeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 228 KIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
.++|.|+||||||+++..++......
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999988876543
No 301
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.18 E-value=0.25 Score=47.95 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=25.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+|+.++|.|++|+||||++..++...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999987764
No 302
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.09 E-value=0.083 Score=46.81 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.2
Q ss_pred CCCceeEEECCCCCChhHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+...++|.|++|+||||++..++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988865
No 303
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.06 E-value=0.055 Score=54.42 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=26.6
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
++.+....+|+.++|.|++|+|||||+..|.-
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhc
Confidence 55556667899999999999999999977653
No 304
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.03 E-value=0.078 Score=47.06 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||||+..+..+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999887754
No 305
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.01 E-value=0.18 Score=50.49 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=24.5
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..+|+.++|.||+|+|||||+..++....
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45677999999999999999998876653
No 306
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.92 E-value=0.14 Score=54.90 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=30.1
Q ss_pred eeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e 279 (428)
=.+|+||||||||+.+..++.+..+... .|.+ +.....-+.++...+.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~--~ILv-~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGL--KVLC-CAPSNIAVDNLVERLAL 255 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC--CEEE-EESSHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCC--eEEE-EcCchHHHHHHHHHHHh
Confidence 4689999999999988888877554322 2332 22334444444444433
No 307
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.88 E-value=0.094 Score=52.78 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=26.0
Q ss_pred cccccCCCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 219 ~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
..+.-++-.+++|+|++|+||||++..++......
T Consensus 17 ~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 17 NRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp HTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 33343444459999999999999999888765433
No 308
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.87 E-value=0.1 Score=50.35 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
..++|+||||||||.++..+++.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999988874
No 309
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.85 E-value=0.098 Score=49.34 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=22.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++..+.|.|+||+||||++..++...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999988753
No 310
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.79 E-value=0.097 Score=48.08 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.0
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999887654
No 311
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.69 E-value=0.097 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.3
Q ss_pred ceeEEECCCCCChhHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+++|+|++|+|||||+..+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999987764
No 312
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.68 E-value=0.11 Score=47.97 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+|..++|.|++|+||||++..++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999888754
No 313
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.66 E-value=0.099 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.3
Q ss_pred eEEECCCCCChhHHHHHHHHH
Q 014249 229 IGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n 249 (428)
+.|.||+|+|||||+..+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999887654
No 314
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.65 E-value=0.1 Score=50.60 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.5
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..++..++|.|++|+|||||+..|.....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46778899999999999999988876543
No 315
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.60 E-value=0.19 Score=49.75 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.6
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+..++|.|+||+|||||+..++...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999888654
No 316
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.58 E-value=0.12 Score=43.71 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
|++++|++|+|||+|+..+..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999887654
No 317
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.57 E-value=0.11 Score=55.75 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=26.1
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
++.+..+.+|+.++|.||+|+|||||+..|+
T Consensus 94 l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 94 LHRLPTPRPGQVLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp EECCCCCCTTSEEEEECCTTSSHHHHHHHHH
T ss_pred ecCCCCCCCCCEEEEECCCCChHHHHHHHHh
Confidence 4444457899999999999999999998775
No 318
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.52 E-value=0.11 Score=43.55 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=19.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999877654
No 319
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.51 E-value=0.085 Score=46.26 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.0
Q ss_pred eeEEECCCCCChhHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~ 248 (428)
++.|.|++|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999987765
No 320
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.49 E-value=0.11 Score=43.76 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||||+..+..+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999887754
No 321
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.49 E-value=0.11 Score=43.55 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+++++|++|+|||+|+..+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999877653
No 322
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.47 E-value=0.22 Score=49.05 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=26.2
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
...++..++|.|++|+|||||+..++....
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999988876653
No 323
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.37 E-value=0.23 Score=48.78 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=26.9
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
...+++.++|.|++|+||||++..++...+.
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4577899999999999999999999887654
No 324
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.37 E-value=0.5 Score=48.56 Aligned_cols=30 Identities=30% Similarity=0.129 Sum_probs=25.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
.++..+++.|++|+||||++..++....+.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 467889999999999999999998876543
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.36 E-value=0.11 Score=44.28 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.3
Q ss_pred ceeEEECCCCCChhHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~ 248 (428)
-+++|+|++|+|||+|+..+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4799999999999999987764
No 326
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.30 E-value=0.22 Score=46.60 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=24.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
.+|.-+.+.|++|+||||++..++++....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 567788888999999999999998886543
No 327
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.29 E-value=0.11 Score=43.40 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=19.5
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
+++++|++|+|||||+..+..+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999887654
No 328
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.23 E-value=0.077 Score=52.96 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=25.2
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 35678999999999999999999888754
No 329
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.19 E-value=0.1 Score=43.97 Aligned_cols=22 Identities=36% Similarity=0.758 Sum_probs=19.6
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
+++++|++|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999887754
No 330
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.14 E-value=0.13 Score=48.60 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.1
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
--|++|+|+||+||||++..++...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3588999999999999998887654
No 331
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.13 E-value=0.13 Score=43.17 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=19.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999877654
No 332
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.12 E-value=0.12 Score=45.80 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=20.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+.-+++|+|++|+|||+|+..+..+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44569999999999999999877653
No 333
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.11 E-value=0.079 Score=48.93 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.5
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+..+|.-++|.|+.|+|||||+..+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 557899999999999999999987754
No 334
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.02 E-value=0.11 Score=55.54 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=26.7
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHH
Q 014249 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+++.+..+.+|+.++|.|++|+|||||+..|+
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHT
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHh
Confidence 45555457899999999999999999998765
No 335
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.00 E-value=0.14 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.-.+.|.||+|+|||||+..++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999887654
No 336
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.98 E-value=0.11 Score=44.10 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++++|++|+|||+|+..+..+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37899999999999999887754
No 337
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.94 E-value=0.14 Score=43.17 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=19.6
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
+++|+|++|+|||+|+..+..+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999887753
No 338
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.90 E-value=0.1 Score=47.08 Aligned_cols=29 Identities=34% Similarity=0.505 Sum_probs=24.4
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+-.+-.++.|.|.+|+|||||+..++.+.
T Consensus 34 ~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 34 NKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33456789999999999999999998775
No 339
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.85 E-value=0.13 Score=44.64 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.6
Q ss_pred ceeEEECCCCCChhHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~ 248 (428)
-+++|+|++|+|||||+..+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999987764
No 340
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.84 E-value=0.12 Score=54.75 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..+..-
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999877643
No 341
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.76 E-value=0.14 Score=43.48 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.2
Q ss_pred eeEEECCCCCChhHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii 247 (428)
+++|+|++|+|||+|+..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998775
No 342
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.74 E-value=0.12 Score=54.50 Aligned_cols=26 Identities=35% Similarity=0.681 Sum_probs=23.4
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+|+.++|.|+.|+|||||+..|+-
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999999987764
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.73 E-value=0.15 Score=43.00 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999888753
No 344
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.65 E-value=0.12 Score=44.13 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999887653
No 345
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=90.62 E-value=0.91 Score=40.72 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCCceeEEECCCCCChhHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIME 245 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ 245 (428)
-.|+++++.+|.|+|||.....
T Consensus 49 ~~~~~~lv~~pTGsGKT~~~~~ 70 (224)
T 1qde_A 49 IEGHDVLAQAQSGTGKTGTFSI 70 (224)
T ss_dssp HTTCCEEEECCTTSSHHHHHHH
T ss_pred hcCCCEEEECCCCCcHHHHHHH
Confidence 3568899999999999987433
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.62 E-value=0.29 Score=43.92 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
..++|.|++|+|||||+..++.....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 45889999999999999999887643
No 347
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.61 E-value=0.15 Score=43.02 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999887754
No 348
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.58 E-value=0.071 Score=47.76 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.6
Q ss_pred eeEEECCCCCChhHHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
-+.|.|++|+||||++..++....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999998887653
No 349
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.57 E-value=0.21 Score=51.15 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=27.7
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++.++ ..+|+.++|.||.|+|||||+..++...
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 455554 3678899999999999999999887765
No 350
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.56 E-value=0.14 Score=43.24 Aligned_cols=21 Identities=43% Similarity=0.820 Sum_probs=18.9
Q ss_pred eeEEECCCCCChhHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~ 248 (428)
+++|+|++|+|||+|+..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 789999999999999987764
No 351
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.56 E-value=0.15 Score=43.14 Aligned_cols=22 Identities=32% Similarity=0.836 Sum_probs=19.6
Q ss_pred ceeEEECCCCCChhHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~ 248 (428)
-+++++|++|+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999987765
No 352
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.53 E-value=0.15 Score=43.51 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999877653
No 353
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.50 E-value=0.16 Score=43.90 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999877653
No 354
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.46 E-value=0.16 Score=47.51 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
-..++|.|++|+||||++..++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999988764
No 355
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.43 E-value=0.13 Score=43.49 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.4
Q ss_pred ceeEEECCCCCChhHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii 247 (428)
-|++|+|++|+|||+|+..+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 378999999999999997664
No 356
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.41 E-value=0.18 Score=44.83 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=20.3
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++|.|++|+||||++..++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999887654
No 357
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.36 E-value=0.13 Score=54.54 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=25.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..+..
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4688999999999999999999987754
No 358
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.35 E-value=0.15 Score=47.39 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.0
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.|..++|.||+|+|||+|+..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4677999999999999999988754
No 359
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.33 E-value=0.16 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.9
Q ss_pred CceeEEECCCCCChhHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+..++|.|++|+||||++..++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988754
No 360
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.33 E-value=2.4 Score=43.43 Aligned_cols=29 Identities=24% Similarity=0.097 Sum_probs=25.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
++..+.|.|++|+||||++..++...+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 78889999999999999999998876543
No 361
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.30 E-value=1.6 Score=40.72 Aligned_cols=56 Identities=20% Similarity=0.007 Sum_probs=35.4
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHh-hcCcEEEEEeecCC-cchHHHHHHHHHHc
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGFSVFAGVGER-TREGNDLYREMIES 280 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~-~~~~~~V~~giGeR-~~Ev~dl~~el~e~ 280 (428)
-.+|.-+.|.|++|+||||++..+...... ....+.+ ..-|. +....+.++++...
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~--~treP~~t~~g~~ir~~l~~ 75 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV--LTREPGGTLLNESVRNLLFK 75 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE--EEESSCSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE--eeeCCCCChHHHHHHHHHhC
Confidence 346788999999999999999998877643 2222222 11221 34555666666543
No 362
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.29 E-value=0.13 Score=54.55 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=25.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..+..
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5788999999999999999999987753
No 363
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.28 E-value=0.16 Score=44.28 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+--+++|+|++|+|||||+..+..+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999877653
No 364
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.26 E-value=0.13 Score=43.96 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999887643
No 365
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.20 E-value=0.14 Score=44.00 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999887754
No 366
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.13 E-value=0.21 Score=42.29 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+.-+++|+|++|+|||+|+..+..+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999877653
No 367
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.13 E-value=0.17 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-|++|+|++|+|||+|+..++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999877654
No 368
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.11 E-value=2.4 Score=37.26 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=19.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+|+++++.+|.|+|||..+...+.+
T Consensus 37 ~~~~~li~~~TGsGKT~~~~~~~~~ 61 (207)
T 2gxq_A 37 EGKDLIGQARTGTGKTLAFALPIAE 61 (207)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHHHHHHH
Confidence 4688999999999999875544433
No 369
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.10 E-value=0.17 Score=43.98 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++++|.+|+|||||+..+..+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37999999999999999888754
No 370
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.09 E-value=0.3 Score=51.82 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
..+.++|.|||||||||++..++.....
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999888876543
No 371
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.08 E-value=0.18 Score=43.52 Aligned_cols=22 Identities=45% Similarity=0.801 Sum_probs=19.7
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
+++|+|++|+|||||+..+..+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999888754
No 372
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.04 E-value=0.18 Score=42.92 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999887654
No 373
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.00 E-value=0.14 Score=44.74 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999888764
No 374
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.99 E-value=0.16 Score=43.28 Aligned_cols=25 Identities=36% Similarity=0.704 Sum_probs=21.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+--+++|+|++|+|||+|+..+..+
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999887754
No 375
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.96 E-value=0.19 Score=45.72 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.6
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
-..++|.|++|+||||++..++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999888764
No 376
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.95 E-value=0.13 Score=54.27 Aligned_cols=27 Identities=33% Similarity=0.609 Sum_probs=24.1
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+.+|+.++|.|++|+|||||+..|+-
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 567999999999999999999987754
No 377
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.95 E-value=0.12 Score=46.51 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=25.6
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++..+-.+++|.|.+|+|||||+..++.+.
T Consensus 24 ~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 24 ALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444566789999999999999999888765
No 378
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.94 E-value=0.2 Score=42.87 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+..+++|+|++|+|||+|+..+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999987764
No 379
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.92 E-value=0.18 Score=44.27 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.3
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-|++|+|++|+|||+|+..+..+
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 47899999999999999887764
No 380
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.91 E-value=0.15 Score=43.94 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
--+++|+|++|+|||+|+..+..+
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999887754
No 381
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.90 E-value=0.15 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=20.3
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 48999999999999999887754
No 382
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.90 E-value=0.19 Score=43.15 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999887653
No 383
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.85 E-value=0.19 Score=43.96 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999877654
No 384
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.84 E-value=0.19 Score=43.53 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=21.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+--+++|+|++|+|||+|+..+..+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999888754
No 385
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.83 E-value=0.18 Score=45.04 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+--+++|+|++|+|||+|+..+..+
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999888764
No 386
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.80 E-value=0.11 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999877754
No 387
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.76 E-value=0.16 Score=54.42 Aligned_cols=26 Identities=35% Similarity=0.681 Sum_probs=23.5
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+|+.++|.|+.|+|||||+..|+-
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 57899999999999999999987764
No 388
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.72 E-value=0.18 Score=42.95 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999877643
No 389
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.68 E-value=0.35 Score=43.31 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.6
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..++|.|++|+|||||+..++....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4688999999999999998887654
No 390
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.66 E-value=0.2 Score=42.96 Aligned_cols=23 Identities=30% Similarity=0.745 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999877654
No 391
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.65 E-value=2 Score=44.97 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=23.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.+...+.|.|.+|+||||++..++...++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45668999999999999999999887654
No 392
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.64 E-value=0.083 Score=52.13 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=24.2
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+..|+.++|.|++|+|||||+..|+.-
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999877654
No 393
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.61 E-value=0.17 Score=51.96 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=23.1
Q ss_pred cccCCCce--eEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGK--IGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqr--i~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|.. ++|+|++|+|||||+..|..
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 45678888 99999999999999987753
No 394
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.60 E-value=0.2 Score=42.91 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=20.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+--+++|+|++|+|||+|+..+..+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999877643
No 395
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.56 E-value=0.18 Score=43.01 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.3
Q ss_pred ceeEEECCCCCChhHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~ 248 (428)
-+++|+|++|+|||+|+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999987754
No 396
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.53 E-value=0.18 Score=53.69 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=25.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..+..
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 5788999999999999999999987653
No 397
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.49 E-value=0.19 Score=43.39 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.3
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999888754
No 398
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.49 E-value=0.17 Score=48.42 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.3
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
+++|.|++|+|||||+..|...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999887754
No 399
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.44 E-value=0.21 Score=42.69 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 48999999999999999877654
No 400
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.43 E-value=0.17 Score=43.68 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.2
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
+++|+|++|+|||+|+..+..+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 7899999999999999877643
No 401
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.38 E-value=0.21 Score=43.43 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999888754
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.38 E-value=0.22 Score=43.76 Aligned_cols=37 Identities=30% Similarity=0.502 Sum_probs=21.6
Q ss_pred ccceeeccccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 212 TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 212 TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
|+...++.|.+ .+--+++|+|++|+|||+|+..+..+
T Consensus 15 ~~~~~~~~~~~-~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 15 TENLYFQSMAK-SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -------------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ccccchhccCC-CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45555556554 34578999999999999999877654
No 403
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.31 E-value=0.44 Score=47.11 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=27.3
Q ss_pred eccccc-cCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 217 VDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 217 ID~l~p-igrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
++.+.+ .++..+++|.|.+|+|||||+..++.....
T Consensus 69 ~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 69 LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334443 356678999999999999999988876543
No 404
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.30 E-value=0.19 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.4
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-++|.||+|+|||||+..|....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999998775543
No 405
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.28 E-value=0.18 Score=44.28 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||||+..+..+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999877654
No 406
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.22 E-value=0.17 Score=43.59 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=20.6
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
--+++|+|++|+|||+|+..+..+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999888754
No 407
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.21 E-value=0.23 Score=43.45 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=21.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+..| -.+|+|+.|+|||||+..|..
T Consensus 22 ~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 22 IPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 345566 789999999999999976643
No 408
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.15 E-value=0.18 Score=56.93 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|+.|+|||||+..|+.
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4788999999999999999999988873
No 409
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.14 E-value=0.12 Score=54.61 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=24.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.||+|+|||||+..+.
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHh
Confidence 578999999999999999999997665
No 410
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.14 E-value=0.24 Score=43.93 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.4
Q ss_pred ceeEEECCCCCChhHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~ 248 (428)
-++.|.|++|||||+|+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999987764
No 411
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.12 E-value=0.23 Score=43.34 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999887654
No 412
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.07 E-value=0.23 Score=42.96 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=17.8
Q ss_pred ceeEEECCCCCChhHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii 247 (428)
-|++|+|++|+|||+|+..+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999995443
No 413
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.06 E-value=0.2 Score=47.53 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.9
Q ss_pred eeEEECCCCCChhHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~ 248 (428)
.++|.|+||+||||++..++.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 414
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=89.05 E-value=1.3 Score=40.29 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=19.1
Q ss_pred CCCceeEEECCCCCChhHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii 247 (428)
-.|+.+++.+|.|+|||......+
T Consensus 60 ~~~~~~li~a~TGsGKT~~~~~~~ 83 (236)
T 2pl3_A 60 LQGKDVLGAAKTGSGKTLAFLVPV 83 (236)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCcHHHHHHHHH
Confidence 357899999999999998754433
No 415
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.04 E-value=0.14 Score=44.07 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii 247 (428)
.+.-+++|+|++|+|||||+..+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567799999999999999996554
No 416
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.03 E-value=0.66 Score=43.63 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e 279 (428)
+|.-+.|.|++|+||||++..+........... +...--..+.+.-+.+++++.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~-~~~~rep~~t~~g~~ir~~l~ 79 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDH-ITRTREPGGTLLAEKLRALVK 79 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCC-EEEEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCe-eeeecCCCCCHHHHHHHHHHh
Confidence 578899999999999999999887764432221 221111234455566666654
No 417
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.03 E-value=0.72 Score=42.58 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=35.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecC-CcchHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE-RTREGNDLYREMIE 279 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGe-R~~Ev~dl~~el~e 279 (428)
+|.-+.|.|++|+||||++..+.......... .|.. ..| .+..+.+.+++++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~-~v~~-~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIR-DMVF-TREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-CEEE-EESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCC-ccee-eeCCCCCHHHHHHHHHHh
Confidence 46778999999999999999888776433220 2221 223 34566677777776
No 418
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.02 E-value=0.24 Score=43.22 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=22.1
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+--+++|+|++|+|||||+..+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999887653
No 419
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.98 E-value=0.23 Score=43.08 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=21.1
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+..+....+.-+++++|++|+|||+|+..+..
T Consensus 9 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 9 LKKMKQKERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp --------CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred HHhhcccCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 33443335667999999999999999987764
No 420
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.97 E-value=2.9 Score=42.78 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=25.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
.+...+.|.|.+|+||||++..++...++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 345678889999999999999999887654
No 421
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.94 E-value=0.24 Score=43.65 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||||+..+..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999887654
No 422
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.91 E-value=0.24 Score=43.33 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.5
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.-+++|+|++|+|||+|+..+..+
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 347999999999999999887654
No 423
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.85 E-value=0.24 Score=43.35 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=20.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.-+++|+|.+|+|||+|+..+..+
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 358999999999999999887754
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.84 E-value=0.12 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.7
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.++|.|++|+|||||+..|+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5789999999999999998887653
No 425
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.83 E-value=0.25 Score=43.28 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=19.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37999999999999999877653
No 426
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.81 E-value=0.25 Score=42.87 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999887654
No 427
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.74 E-value=0.18 Score=52.97 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=23.8
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+.+|+.++|.||+|+|||||+..++.-
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3467888999999999999999877654
No 428
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.70 E-value=0.25 Score=43.06 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=19.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999877653
No 429
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.60 E-value=0.25 Score=45.59 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+|..+.|.|+.|+||||++..++..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667899999999999999888765
No 430
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.55 E-value=0.22 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.3
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
--+++|+|++|+|||+|+..+..+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999887754
No 431
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.54 E-value=0.38 Score=46.43 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=18.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+..-++|.|++|+||||++..+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44569999999999999999887643
No 432
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.53 E-value=0.15 Score=43.95 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=10.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999877654
No 433
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.53 E-value=0.24 Score=43.54 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999887654
No 434
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.52 E-value=0.57 Score=46.68 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=27.1
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev 270 (428)
...++|.|.+|+||+.+++.+-+.. ..... -|.+.|+.-+.+.
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s-~r~~~-fv~vnc~~~~~~~ 194 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYS-GRKGA-FVDLNCASIPQEL 194 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHH-CCCSC-EEEEESSSSCTTT
T ss_pred chhheEEeCCCchHHHHHHHHHHhc-cccCC-cEEEEcccCChHH
Confidence 4568999999999999997554433 22222 3445555544443
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.51 E-value=0.49 Score=47.94 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=20.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+..-++|.|+||+||||+++.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456688899999999999988764
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.50 E-value=0.27 Score=43.47 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=20.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+--+++|+|++|+|||+|+..+..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3468999999999999999877643
No 437
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.41 E-value=0.16 Score=45.30 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=20.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+-.+++|+|++|+|||+|+..+..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445899999999999999977653
No 438
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.40 E-value=0.26 Score=43.46 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999877653
No 439
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=88.40 E-value=0.26 Score=49.98 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.4
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+.+|.+++|.|+||+|||||...+..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 457899999999999999999988876
No 440
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.40 E-value=0.17 Score=53.71 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=24.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..+..
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999999976653
No 441
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.37 E-value=0.46 Score=47.26 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+..+.|+|++|+|||+++..++....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999998887654
No 442
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.34 E-value=0.22 Score=43.44 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=20.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+.-+++|+|++|+|||+|+..+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999976653
No 443
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.33 E-value=0.29 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.5
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+..++|.|++|+||||++..++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999888654
No 444
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.25 E-value=0.18 Score=53.54 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.8
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.+|..+.|.|++|+|||||+..|+...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 46789999999999999999999888765
No 445
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.14 E-value=0.29 Score=42.31 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=21.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.--+++|+|++|+|||||+..+..+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4458999999999999999877654
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.11 E-value=0.23 Score=52.33 Aligned_cols=27 Identities=30% Similarity=0.504 Sum_probs=23.4
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
...+|+..+|+|+.|+|||||+..|+-
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999987653
No 447
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.10 E-value=0.22 Score=44.85 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
--+++|+|++|+|||+|+..+..+
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999888764
No 448
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=88.03 E-value=1.1 Score=50.75 Aligned_cols=23 Identities=17% Similarity=-0.012 Sum_probs=20.9
Q ss_pred CceeEEECCCCCChhHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~ 248 (428)
|+-++|.||.|+|||||++.+..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 89999999999999999998743
No 449
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.00 E-value=0.26 Score=47.18 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.1
Q ss_pred ceeEEECCCCCChhHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii 247 (428)
..++|.|++|+||||++..++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998887
No 450
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=87.97 E-value=0.23 Score=43.70 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=20.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+.-+++|+|++|+|||+|+..+..+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34468999999999999999887754
No 451
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.95 E-value=0.31 Score=42.49 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=21.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+.-+++|+|++|+|||+|+..+..+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34568999999999999999888753
No 452
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.85 E-value=0.23 Score=43.41 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.3
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999888754
No 453
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.85 E-value=0.28 Score=44.07 Aligned_cols=23 Identities=48% Similarity=0.634 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 48999999999999999887754
No 454
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=87.85 E-value=0.55 Score=42.48 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.9
Q ss_pred CCceeEEECCCCCChhHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIME 245 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ 245 (428)
+|+++++.+|.|+|||.....
T Consensus 56 ~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHHH
Confidence 678999999999999986544
No 455
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.84 E-value=0.21 Score=44.32 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=19.6
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 48999999999999999877644
No 456
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.78 E-value=0.23 Score=44.28 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=21.4
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
..+.-+++|+|.+|+|||+|+..+..+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 455679999999999999999887754
No 457
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.76 E-value=0.31 Score=43.04 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=20.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+.-+++|+|++|+|||+|+..+...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34468999999999999999877643
No 458
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=87.74 E-value=0.26 Score=45.45 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.8
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
|++|+|++|||||+|+..++.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 8999999999999999887754
No 459
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.72 E-value=0.29 Score=48.49 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
..++|.||+|+|||||+..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999988764
No 460
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.71 E-value=0.29 Score=43.33 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999877653
No 461
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=87.69 E-value=0.27 Score=43.50 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=21.9
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
|..+--+++|+|.+|+|||+|+..+..+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3445669999999999999999888754
No 462
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=87.64 E-value=0.24 Score=44.05 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=18.3
Q ss_pred ceeEEECCCCCChhHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii 247 (428)
-++.|+|++|+|||+|+..+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999997663
No 463
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.60 E-value=6.8 Score=35.20 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=19.9
Q ss_pred eEEECCCCCChhHHHHHHHHHHHh
Q 014249 229 IGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
|.|-|+-|+||||.+..+.....+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 457799999999999988877644
No 464
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.54 E-value=0.28 Score=42.65 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.+--+++|+|++|+|||+|+..+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999987764
No 465
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.44 E-value=0.31 Score=43.45 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.2
Q ss_pred ceeEEECCCCCChhHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~ 248 (428)
-+++|+|++|+|||+|+..+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999987764
No 466
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.42 E-value=0.46 Score=48.74 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=24.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
++...+.|.|++|+||||++..++...++
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34468999999999999999999887654
No 467
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.42 E-value=0.97 Score=42.30 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=18.5
Q ss_pred CCceeEEECCCCCChhHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii 247 (428)
.|+.+++.+|.|+|||..+...+
T Consensus 90 ~~~~~lv~a~TGsGKT~~~~l~~ 112 (262)
T 3ly5_A 90 EGRDLLAAAKTGSGKTLAFLIPA 112 (262)
T ss_dssp HTCCCEECCCTTSCHHHHHHHHH
T ss_pred CCCcEEEEccCCCCchHHHHHHH
Confidence 46789999999999998765443
No 468
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.37 E-value=0.26 Score=43.86 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.6
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
--+++|+|++|+|||+|+..+..+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999887754
No 469
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.35 E-value=0.28 Score=44.24 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
--|+.|+|++|+|||+|+..+..+
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 358999999999999999888754
No 470
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=87.33 E-value=0.29 Score=42.73 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=20.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
....+++|+|.+|+|||+|+..+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4456899999999999999987764
No 471
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.30 E-value=0.27 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.4
Q ss_pred ceeEEECCCCCChhHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~ 248 (428)
-+++|.|++|+|||||+..+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999987764
No 472
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.27 E-value=0.21 Score=43.35 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.4
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.-+++|+|.+|+|||+|+..+..+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999877643
No 473
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.27 E-value=0.32 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+--+++|+|.+|+|||||+..+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 345899999999999999987764
No 474
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.21 E-value=0.32 Score=43.35 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999877653
No 475
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.19 E-value=0.29 Score=48.83 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.++.-+.|.||.|+|||+|+..++..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34557899999999999999988754
No 476
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=87.10 E-value=0.27 Score=43.76 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=19.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 47999999999999999877643
No 477
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=87.06 E-value=0.53 Score=50.23 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=32.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHc
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIES 280 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~ 280 (428)
..-.+|.||||||||+++..++....+.. ...|.+ +.-...-+.++...+.+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~-~~~ilv-~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQG-NGPVLV-CAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSS-SCCEEE-EESSHHHHHHHHHHHHTT
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcC-CCeEEE-EeCcHHHHHHHHHHHHhc
Confidence 45678999999999999988887654321 222322 223344444544555443
No 478
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=86.99 E-value=0.33 Score=42.97 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=19.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|.+|+|||+|+..+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999877653
No 479
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=86.94 E-value=0.27 Score=47.56 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=21.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
++.+++|.|++|+|||||+..+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5568999999999999999887753
No 480
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=86.94 E-value=0.33 Score=42.65 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=19.4
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999877643
No 481
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.92 E-value=2.5 Score=38.66 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=18.8
Q ss_pred CCceeEEECCCCCChhHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii 247 (428)
.|+.+++.+|.|+|||......+
T Consensus 65 ~g~~~l~~apTGsGKT~~~~l~~ 87 (242)
T 3fe2_A 65 SGLDMVGVAQTGSGKTLSYLLPA 87 (242)
T ss_dssp HTCCEEEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEECCCcCHHHHHHHHHH
Confidence 57899999999999998754433
No 482
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=86.87 E-value=0.2 Score=53.88 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.||+|+|||||+..+.
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 578899999999999999999996543
No 483
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.77 E-value=0.42 Score=47.27 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=20.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
...-+.|.||+|+|||+|+..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3446789999999999999988764
No 484
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.74 E-value=0.37 Score=50.32 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=23.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+ +.++|.|++|+|||||+..|+--
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 45677 99999999999999999877643
No 485
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=86.67 E-value=0.27 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.5
Q ss_pred cccCCCceeEEECCCCCChhHHH
Q 014249 221 APYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa 243 (428)
+.+.+|+.++|.||+|+|||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 57889999999999999999996
No 486
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.67 E-value=0.22 Score=50.86 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.3
Q ss_pred eeEEECCCCCChhHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~ 248 (428)
.++|.|++|+|||||+..|..
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999987764
No 487
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=86.66 E-value=0.27 Score=44.22 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999888654
No 488
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=86.58 E-value=0.28 Score=47.51 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.1
Q ss_pred eeEEECCCCCChhHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~ 248 (428)
+++|.|++|+|||||+..|..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 559999999999999987653
No 489
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.56 E-value=0.32 Score=42.89 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii 247 (428)
.+.-+++|+|++|+|||+|+..+.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999997664
No 490
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=86.54 E-value=0.37 Score=44.09 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.7
Q ss_pred ceeEEECCCCCChhHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii 247 (428)
-|+.|.|.+|||||+|+..+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999997665
No 491
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=86.49 E-value=0.88 Score=41.33 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=27.9
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEE
Q 014249 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~ 260 (428)
..+|+=..++|+.|+||||.+..++++.......+.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 35677788899999999999999998865433334343
No 492
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.33 E-value=0.39 Score=47.92 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.2
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014249 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-++|.||+|+|||||+..++...
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 58899999999999999887653
No 493
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=86.25 E-value=4.8 Score=35.28 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=18.4
Q ss_pred CCceeEEECCCCCChhHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii 247 (428)
.|+.+++.+|.|+|||......+
T Consensus 39 ~~~~~lv~apTGsGKT~~~~~~~ 61 (206)
T 1vec_A 39 SGRDILARAKNGTGKSGAYLIPL 61 (206)
T ss_dssp TTCCEEEECCSSSTTHHHHHHHH
T ss_pred cCCCEEEECCCCCchHHHHHHHH
Confidence 46889999999999997654433
No 494
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=86.22 E-value=0.29 Score=42.72 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=20.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.-+++|+|++|+|||+|+..+..+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999877644
No 495
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=86.11 E-value=0.43 Score=43.06 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|+|++|+|||+|+..+..+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999887754
No 496
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.02 E-value=0.41 Score=43.66 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014249 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
..|.-++|.|++|+|||||+..++..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 35778999999999999999988763
No 497
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=85.91 E-value=2 Score=39.48 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=18.5
Q ss_pred CCceeEEECCCCCChhHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii 247 (428)
.|+.+++.+|.|+|||......+
T Consensus 59 ~~~~~l~~a~TGsGKT~~~~~~~ 81 (253)
T 1wrb_A 59 EHRDIMACAQTGSGKTAAFLIPI 81 (253)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHHHHH
Confidence 46889999999999998654444
No 498
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.84 E-value=0.41 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHH
Q 014249 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+|+.++|.|+.|+|||||+..|+-
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHT
T ss_pred cceEEEEECCCCCcHHHHHHHHhc
Confidence 347899999999999999987753
No 499
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=85.78 E-value=4.6 Score=38.26 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=19.6
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014249 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++++.+|.|+|||..+...+...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 689999999999999876655543
No 500
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=85.72 E-value=0.19 Score=44.09 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=5.7
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014249 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.-+++|+|++|+|||+|+..+..+
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999877654
Done!