Query 014250
Match_columns 428
No_of_seqs 156 out of 506
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkc_A NEDD4-binding protein 2 99.9 1.5E-24 5.2E-29 191.0 8.4 121 265-424 13-135 (135)
2 3fau_A NEDD4-binding protein 2 99.8 1.2E-18 4.2E-23 140.6 7.8 80 306-424 2-82 (82)
3 2d9i_A NEDD4-binding protein 2 99.7 5.7E-17 2E-21 134.4 9.9 87 302-427 6-93 (96)
4 3qd7_X Uncharacterized protein 99.1 9.3E-11 3.2E-15 104.0 6.6 81 303-427 46-134 (137)
5 2zqe_A MUTS2 protein; alpha/be 98.7 4.4E-08 1.5E-12 79.8 9.1 73 304-425 4-83 (83)
6 2dhy_A CUE domain-containing p 97.7 7.9E-05 2.7E-09 58.9 6.7 47 95-141 18-64 (67)
7 1wgl_A TOLL-interacting protei 97.4 0.00019 6.5E-09 55.3 4.8 45 97-141 11-55 (59)
8 1otr_A Protein CUE2; protein-p 96.5 0.0033 1.1E-07 46.9 4.9 43 95-137 4-46 (49)
9 1p3q_Q VPS9P, vacuolar protein 96.4 0.0012 4.2E-08 50.2 2.0 42 95-136 12-53 (54)
10 1z96_A DNA-damage, UBA-domain 86.8 1 3.6E-05 30.6 4.7 35 96-132 5-39 (40)
11 2bwb_A Ubiquitin-like protein 82.0 1.8 6.3E-05 31.2 4.4 37 95-132 7-43 (46)
12 2knz_A Ubiquilin-4; cytoplasm, 81.4 1.9 6.5E-05 31.9 4.4 39 95-134 11-49 (53)
13 2jy5_A Ubiquilin-1; UBA, alter 81.3 2.4 8.2E-05 31.2 4.9 37 95-132 12-48 (52)
14 2g3q_A Protein YBL047C; endocy 81.1 2 6.7E-05 30.1 4.2 34 97-132 6-39 (43)
15 2dah_A Ubiquilin-3; UBA domain 80.2 2.6 8.9E-05 31.4 4.9 39 96-135 10-48 (54)
16 1wr1_B Ubiquitin-like protein 78.8 3 0.0001 31.7 4.9 39 94-133 16-54 (58)
17 1vej_A Riken cDNA 4931431F19; 77.0 4.1 0.00014 32.5 5.4 40 95-135 29-68 (74)
18 1vg5_A RSGI RUH-014, rhomboid 75.2 3.4 0.00012 32.8 4.5 36 96-133 30-65 (73)
19 1wji_A Tudor domain containing 72.0 4.9 0.00017 30.8 4.5 35 97-133 11-45 (63)
20 1dv0_A DNA repair protein HHR2 70.4 1.3 4.6E-05 32.0 1.0 35 96-132 5-39 (47)
21 1ify_A HHR23A, UV excision rep 70.4 4.3 0.00015 29.4 3.7 36 96-133 9-44 (49)
22 1vdl_A Ubiquitin carboxyl-term 69.3 7.4 0.00025 31.5 5.1 41 94-134 23-63 (80)
23 2dae_A KIAA0733 protein; mitog 68.9 3.3 0.00011 33.2 3.0 40 98-137 13-52 (75)
24 1wj7_A Hypothetical protein (R 66.3 7.5 0.00026 33.0 4.9 48 95-143 39-86 (104)
25 2qsf_X RAD23, UV excision repa 64.1 6.1 0.00021 36.1 4.2 37 96-134 131-167 (171)
26 1veg_A NEDD8 ultimate buster-1 62.9 9.6 0.00033 31.0 4.7 36 97-134 31-66 (83)
27 2dkl_A Trinucleotide repeat co 61.7 15 0.0005 29.9 5.6 36 96-133 22-57 (85)
28 2d9s_A CBL E3 ubiquitin protei 60.6 19 0.00066 27.2 5.6 39 97-137 11-49 (53)
29 2ooa_A E3 ubiquitin-protein li 59.9 15 0.0005 27.7 4.9 40 95-136 11-50 (52)
30 2cp9_A EF-TS, EF-TSMT, elongat 53.7 21 0.00074 27.7 5.1 40 97-137 11-50 (64)
31 2lva_A Ubiquitin carboxyl-term 58.7 2.8 9.5E-05 36.8 0.0 41 95-135 18-58 (129)
32 1wiv_A UBP14, ubiquitin-specif 50.5 22 0.00076 27.8 4.8 35 97-133 31-65 (73)
33 2cpw_A CBL-interacting protein 49.3 22 0.00074 27.1 4.5 35 97-133 21-56 (64)
34 2di0_A Activating signal coint 49.1 29 0.00099 27.5 5.2 38 95-132 13-50 (71)
35 2oo9_A E3 ubiquitin-protein li 48.6 16 0.00053 27.0 3.3 39 97-137 6-44 (46)
36 2dak_A Ubiquitin carboxyl-term 47.7 21 0.0007 26.9 4.1 37 96-134 10-46 (63)
37 3lvj_C Sulfurtransferase TUSA; 46.6 64 0.0022 25.1 7.0 69 304-425 10-80 (82)
38 2dna_A Unnamed protein product 46.3 29 0.001 27.1 4.8 42 95-137 19-60 (67)
39 3k9o_A Ubiquitin-conjugating e 45.1 21 0.00072 32.5 4.5 37 95-133 163-199 (201)
40 2cwb_A Chimera of immunoglobul 44.9 25 0.00087 29.8 4.6 39 95-134 66-104 (108)
41 2dag_A Ubiquitin carboxyl-term 42.6 34 0.0012 26.8 4.8 36 97-134 11-47 (74)
42 2fi9_A Outer membrane protein; 39.6 19 0.00066 30.8 3.2 32 379-413 69-100 (128)
43 2dai_A Ubadc1, ubiquitin assoc 39.1 41 0.0014 27.0 4.8 36 97-134 31-66 (83)
44 2juj_A E3 ubiquitin-protein li 37.4 19 0.00066 27.4 2.4 39 97-137 9-47 (56)
45 2lbc_A Ubiquitin carboxyl-term 36.4 43 0.0015 28.2 4.8 35 97-133 80-114 (126)
46 2ab1_A Hypothetical protein; H 34.7 27 0.00094 29.7 3.3 34 379-414 62-95 (122)
47 1whc_A RSGI RUH-027, UBA/UBX 3 34.4 44 0.0015 25.3 4.1 36 97-134 11-47 (64)
48 1jdq_A TM006 protein, hypothet 31.5 85 0.0029 25.6 5.7 68 305-425 27-97 (98)
49 2gm2_A Conserved hypothetical 31.4 28 0.00095 30.1 2.8 31 380-413 66-96 (132)
50 2ekk_A UBA domain from E3 ubiq 31.1 65 0.0022 22.6 4.3 33 97-132 11-43 (47)
51 4ae4_A Ubiquitin-associated pr 30.3 53 0.0018 27.9 4.4 36 97-134 78-113 (118)
52 2fvt_A Conserved hypothetical 30.1 31 0.0011 29.9 2.9 32 379-413 68-99 (135)
53 2crn_A Ubash3A protein; compac 26.2 78 0.0027 24.1 4.2 36 97-134 11-47 (64)
54 1oqy_A HHR23A, UV excision rep 25.6 21 0.00072 35.9 1.1 38 95-134 325-362 (368)
55 3o10_A Sacsin; all-helical dom 25.3 97 0.0033 26.5 5.2 38 240-277 6-43 (141)
56 1vek_A UBP14, ubiquitin-specif 25.0 84 0.0029 25.1 4.4 36 97-134 31-67 (84)
57 3e46_A Ubiquitin-conjugating e 24.9 73 0.0025 30.4 4.7 37 95-133 215-251 (253)
58 4fm3_A Uncharacterized hypothe 24.4 2.5E+02 0.0086 23.4 7.3 38 247-284 31-68 (98)
59 3hz7_A Uncharacterized protein 23.9 1.1E+02 0.0039 24.2 5.0 68 306-425 3-72 (87)
60 2i7u_A Four-alpha-helix bundle 23.3 2.4E+02 0.0082 21.2 6.5 29 238-266 3-31 (62)
61 3cpk_A Uncharacterized protein 22.4 53 0.0018 29.3 3.0 32 379-413 89-120 (150)
62 3e7l_A Transcriptional regulat 20.5 65 0.0022 23.6 2.7 25 109-133 19-43 (63)
No 1
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=99.90 E-value=1.5e-24 Score=191.00 Aligned_cols=121 Identities=33% Similarity=0.395 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccc
Q 014250 265 DHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSEN-DMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKV 343 (428)
Q Consensus 265 d~~~Ak~lS~~Ar~~~~~aeean~~AA~~If~~rNs~n-~~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~ 343 (428)
.+..|.+||++|+.+.++|+++|.+||+.||+.+|... ....||||||+++||+.+|+.+|.......
T Consensus 13 ~~~~A~~~s~~g~~~~~~~~~~~~~Aa~~If~~~N~~~~~~~~LDLHGl~v~EA~~~L~~fL~~a~~~~----------- 81 (135)
T 2vkc_A 13 HMLVPRGSLQQGTLHEQKMKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEF----------- 81 (135)
T ss_dssp ------------------CCSHHHHHHHHHHHHHHHHHGGGTEEECTTCCHHHHHHHHHHHHHHHHHHH-----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCceEEeCCCcHHHHHHHHHHHHHHHHHHH-----------
Confidence 35789999999999999999999999999999999863 568999999999999999999998753100
Q ss_pred cccCCcccccccccccccchhhhhhhhhhhhccCceEEEEEccCCCCCCC-CCchHHHHHHHHHcCCeeeeCCCeEEEEe
Q 014250 344 KSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQ-AALPTAVKNFLSESGYRFDEARPGVITVR 422 (428)
Q Consensus 344 k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VITGrG~HS~G~-arLkpAV~~fL~e~Gyrf~E~~pGvI~V~ 422 (428)
+... ....|.||||+|.||.|+ ++||++|..||.+.+|+|.|.++|++.|.
T Consensus 82 ~~~~----------------------------g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~g~G~~~V~ 133 (135)
T 2vkc_A 82 KQNG----------------------------GKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVM 133 (135)
T ss_dssp HHTC----------------------------CCSEEEEECCSCSSSCCSCCTHHHHHHHHHHTTTCEEEECSTTEEEEE
T ss_pred HhhC----------------------------CCeEEEEEECCCcCCCCCCchHHHHHHHHHhcCCCceeeCCCCeEEEE
Confidence 0001 124799999999999976 99999999999999999999999999998
Q ss_pred ee
Q 014250 423 PK 424 (428)
Q Consensus 423 ~k 424 (428)
.|
T Consensus 134 Lk 135 (135)
T 2vkc_A 134 LK 135 (135)
T ss_dssp CC
T ss_pred eC
Confidence 64
No 2
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=99.75 E-value=1.2e-18 Score=140.64 Aligned_cols=80 Identities=43% Similarity=0.612 Sum_probs=60.3
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEEEc
Q 014250 306 KLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITG 385 (428)
Q Consensus 306 ~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VITG 385 (428)
+|||||++++||+.+|+++|..++..+ + .......+.||||
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~-----------~----------------------------~~~g~~~v~II~G 42 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEF-----------K----------------------------QNGGKPYLSVITG 42 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHH-----------H----------------------------HHCCCCEEEEECC
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHh-----------h----------------------------ccCCceEEEEEEC
Confidence 699999999999999999999876321 0 0012257999999
Q ss_pred cCCCCCCC-CCchHHHHHHHHHcCCeeeeCCCeEEEEeee
Q 014250 386 IGNHSRGQ-AALPTAVKNFLSESGYRFDEARPGVITVRPK 424 (428)
Q Consensus 386 rG~HS~G~-arLkpAV~~fL~e~Gyrf~E~~pGvI~V~~k 424 (428)
+|.||.++ ++||++|.+||.+++|+|+|.++|+|.|..|
T Consensus 43 kG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~n~G~l~V~l~ 82 (82)
T 3fau_A 43 RGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK 82 (82)
T ss_dssp C---------CHHHHHHHHHHHTTCCEEEEETTEEEEEC-
T ss_pred CCCCCCCCcchHHHHHHHHHHhCCCceeeCCCEEEEEEeC
Confidence 99999965 9999999999999999999999999999864
No 3
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=99.69 E-value=5.7e-17 Score=134.38 Aligned_cols=87 Identities=39% Similarity=0.536 Sum_probs=72.5
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEE
Q 014250 302 NDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQ 381 (428)
Q Consensus 302 n~~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~ 381 (428)
....+||||||+++||+++|+.+|......+ ++. .....+.
T Consensus 6 ~~~~~lDLHGl~v~eA~~~L~~~L~~~~~~~-----------~~~----------------------------~g~~~v~ 46 (96)
T 2d9i_A 6 SGQNVLDLHGLHVDEALEHLMRVLEKKTEEF-----------KQN----------------------------GGKPYLS 46 (96)
T ss_dssp CSCCEEECTTSCHHHHHHHHHHHHHHHHHHH-----------HHT----------------------------TCCSEEE
T ss_pred CCCCeEECCCCCHHHHHHHHHHHHHHHHHHH-----------Hhh----------------------------CCCeEEE
Confidence 3567999999999999999999999764210 000 1124799
Q ss_pred EEEccCCCCCCC-CCchHHHHHHHHHcCCeeeeCCCeEEEEeeeccC
Q 014250 382 VITGIGNHSRGQ-AALPTAVKNFLSESGYRFDEARPGVITVRPKFRQ 427 (428)
Q Consensus 382 VITGrG~HS~G~-arLkpAV~~fL~e~Gyrf~E~~pGvI~V~~k~r~ 427 (428)
||||+|.||.++ ++||++|.+||.+++|+|.|.++|++.|..|..+
T Consensus 47 IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~egg~Ga~~V~L~~~~ 93 (96)
T 2d9i_A 47 VITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLKSGP 93 (96)
T ss_dssp EECCCSGGGTTCTTCHHHHHHHHHHHTTCCEECCSTTCEEEECCCCC
T ss_pred EEECcCCCCCCCcchHHHHHHHHHhhCCCccccCCCcEEEEEEccCC
Confidence 999999999976 9999999999999999999899999999998765
No 4
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=99.09 E-value=9.3e-11 Score=103.96 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=66.2
Q ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEE
Q 014250 303 DMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQV 382 (428)
Q Consensus 303 ~~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~V 382 (428)
....|||||++++||...|..+|..... .| ...+.|
T Consensus 46 ~~~~LDLHG~~~~EA~~~L~~fL~~a~~----------------~g----------------------------~r~V~I 81 (137)
T 3qd7_X 46 QQASLNLLRQPVEECRKMVFSFIQQALA----------------DG----------------------------LRNVLI 81 (137)
T ss_dssp GGGEEECTTCCHHHHHHHHHHHHHHHHH----------------TT----------------------------CSEEEE
T ss_pred CCeEEECCCCCHHHHHHHHHHHHHHHHH----------------CC----------------------------CCEEEE
Confidence 3568999999999999999999997642 12 247999
Q ss_pred EEccCCCCCCC-CCchHHHHHHHHHcCCe--ee-----eCCCeEEEEeeeccC
Q 014250 383 ITGIGNHSRGQ-AALPTAVKNFLSESGYR--FD-----EARPGVITVRPKFRQ 427 (428)
Q Consensus 383 ITGrG~HS~G~-arLkpAV~~fL~e~Gyr--f~-----E~~pGvI~V~~k~r~ 427 (428)
|||+|.||.++ +.||.+|..||.++.+. |. +-+.|++.|..|++.
T Consensus 82 IHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Gat~V~Lr~~~ 134 (137)
T 3qd7_X 82 IHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKTA 134 (137)
T ss_dssp ECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGEEEEEECC--
T ss_pred EECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEEEEEEEEchh
Confidence 99999999976 79999999999998863 53 248999999988754
No 5
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=98.72 E-value=4.4e-08 Score=79.75 Aligned_cols=73 Identities=27% Similarity=0.435 Sum_probs=58.9
Q ss_pred CcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEE
Q 014250 304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVI 383 (428)
Q Consensus 304 ~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VI 383 (428)
..+|||||++++||...|..+|..... .| ...+.||
T Consensus 4 ~~~lDLhG~~~~eA~~~l~~fl~~a~~----------------~g----------------------------~~~v~II 39 (83)
T 2zqe_A 4 VKEVDLRGLTVAEALLEVDQALEEARA----------------LG----------------------------LSTLRLL 39 (83)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHHHHHH----------------TT----------------------------CSEEEEE
T ss_pred ccEEECCCCCHHHHHHHHHHHHHHHHH----------------CC----------------------------CCEEEEE
Confidence 358999999999999999999997542 12 2479999
Q ss_pred EccCCCCCCCCCchHHHHHHHHHcCC--eeee-----CCCeEEEEeeec
Q 014250 384 TGIGNHSRGQAALPTAVKNFLSESGY--RFDE-----ARPGVITVRPKF 425 (428)
Q Consensus 384 TGrG~HS~G~arLkpAV~~fL~e~Gy--rf~E-----~~pGvI~V~~k~ 425 (428)
+|+|. ..||.+|..||.+..+ .|.. -+.|+..|..|+
T Consensus 40 HGkG~-----GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~V~Lk~ 83 (83)
T 2zqe_A 40 HGKGT-----GALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALRP 83 (83)
T ss_dssp CCSTT-----SHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEEEEECC
T ss_pred ECCCc-----hHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEEEEEeC
Confidence 99997 5899999999999875 3442 247999998763
No 6
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=7.9e-05 Score=58.92 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhhcCCC
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGS 141 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~~~~~ 141 (428)
...+++.|++|||=.|..+|+.||.++++|++.|+..|-.|..+...
T Consensus 18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~~ 64 (67)
T 2dhy_A 18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESGP 64 (67)
T ss_dssp SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCC
Confidence 44889999999999999999999999999999999999999986654
No 7
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.37 E-value=0.00019 Score=55.28 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=41.9
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhhcCCC
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGS 141 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~~~~~ 141 (428)
-.++.|++|||-.|..+|++||.+.++|++.|+..|-.|..+...
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~ 55 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSG 55 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCC
Confidence 689999999999999999999999999999999999999886553
No 8
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=96.51 E-value=0.0033 Score=46.85 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhh
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~ 137 (428)
+.-.++.|++|||-.+...|+.+|.++++|++.|+..|=.|.+
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 3468999999999999999999999999999999999888754
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=96.40 E-value=0.0012 Score=50.24 Aligned_cols=42 Identities=29% Similarity=0.306 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhh
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMV 136 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~ 136 (428)
+...++.|++|||=.|.++|++|+.+-+++++.|...|=.|.
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms 53 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLS 53 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC------
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 567899999999999999999999999999999998887774
No 10
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=86.77 E-value=1 Score=30.56 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=30.8
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250 96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL 132 (428)
Q Consensus 96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L 132 (428)
..+|++|++| ..+.+.++.+|.++++|++.|...|
T Consensus 5 ~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4689999999 5678888999999999999999876
No 11
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=82.05 E-value=1.8 Score=31.23 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL 132 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L 132 (428)
....|++|++|- .-|...+..+|.++++|+++|+..|
T Consensus 7 ~~~~i~~L~~MG-F~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 7 YEHQLRQLNDMG-FFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp THHHHHHHHHTT-CCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 456899999994 4577788889999999999999877
No 12
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=81.41 E-value=1.9 Score=31.85 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHh
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~ 134 (428)
....|++|++|- +-|.+.+..+|.++++|+++|+..|-.
T Consensus 11 ~~~~l~~L~~MG-F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 11 FQQQLEQLNSMG-FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456799999994 669999999999999999999988743
No 13
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=81.32 E-value=2.4 Score=31.23 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL 132 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L 132 (428)
....|++|++| .+-|.+.+..+|.++++|+++|+..|
T Consensus 12 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 12 FQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 34789999999 46699999999999999999999887
No 14
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=81.06 E-value=2 Score=30.05 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=30.1
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL 132 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L 132 (428)
.+|++|.+|- -+.+.+..+|.++++|++.|...|
T Consensus 6 ~~i~~L~~MG--F~~~~a~~AL~~~~~n~e~A~~~L 39 (43)
T 2g3q_A 6 LAVEELSGMG--FTEEEAHNALEKCNWDLEAATNFL 39 (43)
T ss_dssp HHHHHHHTTT--SCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHhCcCHHHHHHHH
Confidence 6799999994 677888889999999999999887
No 15
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.24 E-value=2.6 Score=31.45 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhh
Q 014250 96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (428)
Q Consensus 96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m 135 (428)
...|++|++| ..-|...+..+|.++++|+++|+.+|-..
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4679999999 46688888899999999999999988654
No 16
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=78.77 E-value=3 Score=31.66 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHH
Q 014250 94 SRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (428)
Q Consensus 94 ~~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~ 133 (428)
.....|++|++|- .-|.+.+..+|.++++|+++|+.+|-
T Consensus 16 ~~~~qi~~L~~MG-F~d~~~~~~AL~~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 16 RYEHQLRQLNDMG-FFDFDRNVAALRRSGGSVQGALDSLL 54 (58)
T ss_dssp HTHHHHHHHHHHT-CCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3457899999994 56778888999999999999998874
No 17
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.03 E-value=4.1 Score=32.47 Aligned_cols=40 Identities=33% Similarity=0.389 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhh
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m 135 (428)
....|++|++|- .-|.+.+..+|.++++|+++|+.+|=..
T Consensus 29 ye~qi~qL~eMG-F~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 29 YQQELEELKALG-FANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp SHHHHHHHHHHT-CCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 346899999994 4577888899999999999999888643
No 18
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=75.17 E-value=3.4 Score=32.80 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=32.1
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHH
Q 014250 96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (428)
Q Consensus 96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~ 133 (428)
+.+|++|.+|- -+.+.++.+|.+++||+++|+.+|-
T Consensus 30 ee~I~~L~eMG--F~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 30 EEQIQKLVAMG--FDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp HHHHHHHHTTT--CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37899999994 6899999999999999999998874
No 19
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=72.00 E-value=4.9 Score=30.82 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=30.9
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHH
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~ 133 (428)
.+|++|.+|- -+.+.+..+|.++++|+++|+..|-
T Consensus 11 ~~I~~L~~MG--F~~~~a~~AL~~~~~nve~A~e~L~ 45 (63)
T 1wji_A 11 KALKHITEMG--FSKEASRQALMDNGNNLEAALNVLL 45 (63)
T ss_dssp HHHHHHHTTT--CCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6899999993 5888889999999999999998874
No 20
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=70.43 E-value=1.3 Score=32.05 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250 96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL 132 (428)
Q Consensus 96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L 132 (428)
..+|++|++| ..+..++.-+|.++++|.+.|...|
T Consensus 5 ~eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 5 KEAIERLKAL--GFPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp HHHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3689999999 5788888889999999999999887
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=70.39 E-value=4.3 Score=29.43 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHH
Q 014250 96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (428)
Q Consensus 96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~ 133 (428)
..+|++|.+|- -+.+.++.+|.+++||+++|+..|-
T Consensus 9 ~~~i~~L~~MG--F~~~~a~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 9 ETMLTEIMSMG--YERERVVAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHTTTSCSHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46899999994 4999999999999999999998874
No 22
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=69.31 E-value=7.4 Score=31.52 Aligned_cols=41 Identities=12% Similarity=0.333 Sum_probs=37.7
Q ss_pred chHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHh
Q 014250 94 SRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (428)
Q Consensus 94 ~~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~ 134 (428)
.-+.-+++|||.-.--|..++...|.+-++|+.+|+++|-+
T Consensus 23 ~~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 23 HQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp CHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 35678999999999999999999999999999999999964
No 23
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.93 E-value=3.3 Score=33.22 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=36.3
Q ss_pred HHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhh
Q 014250 98 ALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (428)
Q Consensus 98 ~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~ 137 (428)
-|..||+.||..+..+|-+.|...+++++..+.+|.-=..
T Consensus 13 vfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~ 52 (75)
T 2dae_A 13 VLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQEST 52 (75)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999976444
No 24
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.33 E-value=7.5 Score=33.02 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhhcCCCcc
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAE 143 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~~~~~~~ 143 (428)
.+-.|++|.+|.. .+.+.++.+|..+|+|+.+|+.+|-.=.+.....+
T Consensus 39 ~eekVk~L~EmtG-~seeeAr~AL~~~ngDl~~AI~~Lleg~~~~~~W~ 86 (104)
T 1wj7_A 39 FEEKVKQLIDITG-KNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWE 86 (104)
T ss_dssp HHHHHHHHHHHTC-CCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCS
T ss_pred HHHHHHHHHHhhC-CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCcee
Confidence 4568999999955 56788889999999999999887754333233333
No 25
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=64.10 E-value=6.1 Score=36.15 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=31.5
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHh
Q 014250 96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (428)
Q Consensus 96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~ 134 (428)
.-+|++||+|- .|.++|--+|.+|+.|.+.|..+|=.
T Consensus 131 ~eaI~rL~~mG--F~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 131 DQAISRLCELG--FERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHHTTT--CCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47899999993 67777777999999999999988743
No 26
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=62.92 E-value=9.6 Score=31.02 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=32.3
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~ 134 (428)
.+|++|.+|. .+.+.++-+|.++++|+++|+..|-.
T Consensus 31 e~I~~Lv~MG--F~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 31 ESINQLVYMG--FDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHS--CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 6899999994 69999999999999999999988754
No 27
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.73 E-value=15 Score=29.86 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHH
Q 014250 96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (428)
Q Consensus 96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~ 133 (428)
..+|++|.+| ..+.+.++.+|.+.++|++.|+..|-
T Consensus 22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~ 57 (85)
T 2dkl_A 22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALL 57 (85)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5789999999 45778888888999999999998874
No 28
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.62 E-value=19 Score=27.19 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~ 137 (428)
..|++|-+| ..+.+-+.-.|..++||+++|+.+|-+.++
T Consensus 11 ~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 11 SEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREFSG 49 (53)
T ss_dssp HHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 568899777 678888999999999999999999998776
No 29
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=59.88 E-value=15 Score=27.72 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhh
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMV 136 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~ 136 (428)
+.-.|++|-+| ..+.+-+...|...+||+++|+.+|-+.+
T Consensus 11 ~~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLlef~ 50 (52)
T 2ooa_A 11 VDAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILREFA 50 (52)
T ss_dssp CHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHhc
Confidence 34789999877 67888888999999999999999997654
No 30
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=53.66 E-value=21 Score=27.67 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=32.7
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~ 137 (428)
..|++|+++-. +.-.=...+|..+|+|+++|...|..-..
T Consensus 11 ~~Vk~LRe~TG-ag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~ 50 (64)
T 2cp9_A 11 ELLMKLRRKTG-YSFVNCKKALETCGGDLKQAEIWLHKEAQ 50 (64)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHcCCCHHHHHHHHHHHhH
Confidence 56999999955 55555678899999999999999986654
No 31
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=58.67 E-value=2.8 Score=36.83 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhh
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m 135 (428)
-+.-+++|||.-.=-|..++..+|.|.++|+.+|+++|.+=
T Consensus 18 ~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 18 GQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 34678999999999999999999999999999999999764
No 32
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=50.50 E-value=22 Score=27.83 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=30.9
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHH
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~ 133 (428)
.+|++|.+|- -+...++.+|.+++||+++|+..|=
T Consensus 31 ~~v~~L~~MG--F~~~~a~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 31 SSVDTLLSFG--FAEDVARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp HHHHHHHHHT--CCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6799999994 5889999999999999999998873
No 33
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.33 E-value=22 Score=27.13 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=30.0
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhc-cHHHHHHHHH
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDN-DIKRASNLLE 133 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~-d~~~a~~~L~ 133 (428)
..|++|.+| .-+.+.++-+|.+++| |++.|+..|=
T Consensus 21 ~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~ 56 (64)
T 2cpw_A 21 SALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 578999999 3577888999999998 9999998873
No 34
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.08 E-value=29 Score=27.55 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL 132 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L 132 (428)
....|..++++||=.-..-|..++..-|+|+++++..|
T Consensus 13 l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~L 50 (71)
T 2di0_A 13 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNI 50 (71)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 55789999999999999999999999999999998755
No 35
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=48.57 E-value=16 Score=26.96 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=31.7
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~ 137 (428)
..|..|-.| .-|.+-++-.|..++||+++|+.+|-+.++
T Consensus 6 ~~I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~~ 44 (46)
T 2oo9_A 6 SEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFAA 44 (46)
T ss_dssp HHHHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence 466777665 467788888999999999999999987765
No 36
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.72 E-value=21 Score=26.95 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=31.3
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHh
Q 014250 96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (428)
Q Consensus 96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~ 134 (428)
...|++|.+| .-+.+.++.+|.+++||+++|+..|=.
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3689999999 347888899999999999999988744
No 37
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=46.59 E-value=64 Score=25.14 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=49.8
Q ss_pred CcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEE
Q 014250 304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVI 383 (428)
Q Consensus 304 ~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VI 383 (428)
...||+-|+.-.+-+-.++..|..+. .| ..|.|+
T Consensus 10 ~~~lD~rGl~CP~Pvl~~kkal~~l~-----------------~G-----------------------------~~l~V~ 43 (82)
T 3lvj_C 10 DHTLDALGLRCPEPVMMVRKTVRNMQ-----------------PG-----------------------------ETLLII 43 (82)
T ss_dssp SEEEECTTCCTTHHHHHHHHHHHTSC-----------------TT-----------------------------CEEEEE
T ss_pred CEEEECCCCCCCHHHHHHHHHHHhCC-----------------CC-----------------------------CEEEEE
Confidence 45899999999999988888887531 12 258888
Q ss_pred EccCCCCCCCCCchHHHHHHHHHcCCeeee--CCCeEEEEeeec
Q 014250 384 TGIGNHSRGQAALPTAVKNFLSESGYRFDE--ARPGVITVRPKF 425 (428)
Q Consensus 384 TGrG~HS~G~arLkpAV~~fL~e~Gyrf~E--~~pGvI~V~~k~ 425 (428)
+--. .-..-|..|+.+.||.+.. ...|.+.++-++
T Consensus 44 ~dd~-------~a~~di~~~~~~~G~~~~~~~~~~~~~~i~I~K 80 (82)
T 3lvj_C 44 ADDP-------ATTRDIPGFCTFMEHELVAKETDGLPYRYLIRK 80 (82)
T ss_dssp ECCT-------THHHHHHHHHHHTTCEEEEEECSSSSEEEEEEC
T ss_pred ECCc-------cHHHHHHHHHHHCCCEEEEEEecCCEEEEEEEE
Confidence 7332 2244699999999999843 467777776553
No 38
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.31 E-value=29 Score=27.12 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhh
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~ 137 (428)
....+++|++|= .-|...+..+|.++++|+++|+..|-.-..
T Consensus 19 y~~ql~qL~~MG-F~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 19 FSKEMECLQAMG-FVNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp THHHHHHHHHHT-CCCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 456899999986 467777778899999999999998865443
No 39
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=45.11 E-value=21 Score=32.50 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHH
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~ 133 (428)
.+.+|++|.+| ..|.+.+..+|...++|+++|+..|=
T Consensus 163 ~eekV~~l~~M--Gf~~~~a~~AL~~~~wd~~~A~e~L~ 199 (201)
T 3k9o_A 163 YTKKIENLCAM--GFDRNAVIVALSSKSWDVETATELLL 199 (201)
T ss_dssp HHHHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 46899999999 68889999999999999999999873
No 40
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=44.94 E-value=25 Score=29.81 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHh
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~ 134 (428)
....|++|++|= .-|.+.+..+|.++++|+++|+..|-.
T Consensus 66 ~~~qL~qL~eMG-F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 66 WQPQLQQLRDMG-IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp THHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 357899999996 356678889999999999999998854
No 41
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.61 E-value=34 Score=26.77 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=30.1
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhc-cHHHHHHHHHh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDN-DIKRASNLLEG 134 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~-d~~~a~~~L~~ 134 (428)
..|++|.+| .-+...++-+|.+++| |++.|+..|=.
T Consensus 11 ~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 11 SVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp HHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 689999999 3567888888999986 89999988754
No 42
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=39.57 E-value=19 Score=30.77 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=26.3
Q ss_pred eEEEEEccCCCCCCCCCchHHHHHHHHHcCCeeee
Q 014250 379 SLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDE 413 (428)
Q Consensus 379 ~L~VITGrG~HS~G~arLkpAV~~fL~e~Gyrf~E 413 (428)
.=.||.|.|.. ...++|+++++|.+.|+.++.
T Consensus 69 pevliiGtG~~---~~~l~p~~~~~l~~~GI~vE~ 100 (128)
T 2fi9_A 69 IEVLLIGTGVE---LLRLPEELRVLLWEKRISSDT 100 (128)
T ss_dssp CSEEEEECTTS---CCCCCHHHHHHHHHTTCEEEE
T ss_pred CCEEEECCCCC---CCCCCHHHHHHHHHcCCEEEE
Confidence 44578888887 368899999999999999864
No 43
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.10 E-value=41 Score=27.04 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=29.6
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~ 134 (428)
..|++|.+| .-+...++-+|.++++|++.|+..|=.
T Consensus 31 ~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 31 AALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 689999999 356677778888889999999988743
No 44
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=37.45 E-value=19 Score=27.44 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=33.4
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~ 137 (428)
..|++|-+| .-|.+-+...|...+||+++|+.+|-+.++
T Consensus 9 ~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 9 SEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 578888776 567777888899999999999999998887
No 45
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=36.44 E-value=43 Score=28.24 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=30.6
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHH
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~ 133 (428)
..|++|.+| .-+.+.+..+|.+++||+++|+..|=
T Consensus 80 ~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~ 114 (126)
T 2lbc_A 80 EIVAIITSM--GFQRNQAIQALRATNNNLERALDWIF 114 (126)
T ss_dssp HHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 679999998 46688999999999999999998873
No 46
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=34.70 E-value=27 Score=29.72 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=26.0
Q ss_pred eEEEEEccCCCCCCCCCchHHHHHHHHHcCCeeeeC
Q 014250 379 SLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDEA 414 (428)
Q Consensus 379 ~L~VITGrG~HS~G~arLkpAV~~fL~e~Gyrf~E~ 414 (428)
.=.||.|.|.... -+++|.++++|.+.|+.++.+
T Consensus 62 ~evliiGtG~~~~--~~~~~~~~~~l~~~gI~ve~m 95 (122)
T 2ab1_A 62 VQTLVIGRGMSEA--LKVPSSTVEYLKKHGIDVRVL 95 (122)
T ss_dssp CSEEEEEECSSCC--SCCCHHHHHHHHHTTCEEEEE
T ss_pred CCEEEECCCCCCc--cCCCHHHHHHHHHcCCEEEEe
Confidence 3356778887542 469999999999999998643
No 47
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.44 E-value=44 Score=25.34 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHhccccchhHHHHHHHHh-hccHHHHHHHHHh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAV-DNDIKRASNLLEG 134 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av-~~d~~~a~~~L~~ 134 (428)
..|++|.+| .-+...++-+|.++ ++|++.|+..|=.
T Consensus 11 ~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 11 TALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 578999998 35567778888888 7999999988743
No 48
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=31.53 E-value=85 Score=25.56 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=48.1
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEEE
Q 014250 305 WKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVIT 384 (428)
Q Consensus 305 ~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VIT 384 (428)
..||+-|+.-..-+-.++..|..+. .| ..|.|++
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~-----------------~G-----------------------------e~L~Vl~ 60 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMK-----------------PG-----------------------------EILEVWI 60 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCC-----------------TT-----------------------------CEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCC-----------------CC-----------------------------CEEEEEE
Confidence 4699999999999998888888641 12 2588876
Q ss_pred ccCCCCCCCCCchHHHHHHHHHcCCeeeeC--C-CeEEEEeeec
Q 014250 385 GIGNHSRGQAALPTAVKNFLSESGYRFDEA--R-PGVITVRPKF 425 (428)
Q Consensus 385 GrG~HS~G~arLkpAV~~fL~e~Gyrf~E~--~-pGvI~V~~k~ 425 (428)
--.. -..-|..|+.+.||.+... . .|.+.|+.++
T Consensus 61 dd~~-------a~~dI~~~~~~~G~~v~~~e~~~~g~~~i~I~K 97 (98)
T 1jdq_A 61 DYPM-------SKERIPETVKKLGHEVLEIEEVGPSEWKIYIKV 97 (98)
T ss_dssp SSCT-------HHHHHHHHHHHSSCCEEEEEECSSSCEEEEEEC
T ss_pred CCcc-------HHHHHHHHHHHCCCEEEEEEEecCCEEEEEEEE
Confidence 4322 2445999999999998532 3 5767666543
No 49
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=31.44 E-value=28 Score=30.08 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=25.1
Q ss_pred EEEEEccCCCCCCCCCchHHHHHHHHHcCCeeee
Q 014250 380 LQVITGIGNHSRGQAALPTAVKNFLSESGYRFDE 413 (428)
Q Consensus 380 L~VITGrG~HS~G~arLkpAV~~fL~e~Gyrf~E 413 (428)
=.||.|.|..- ..++|+++++|.+.|+.++.
T Consensus 66 evliiGTG~~~---~~l~p~~~~~l~~~GI~vE~ 96 (132)
T 2gm2_A 66 AVILLGTGERQ---QFPSTDVLAACLTRGIGLEA 96 (132)
T ss_dssp SEEEEECTTSC---CCCCHHHHHHHHHHTCEEEE
T ss_pred CEEEECCCCCC---CcCCHHHHHHHHHcCCEEEE
Confidence 34677888754 38899999999999999864
No 50
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.06 E-value=65 Score=22.61 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL 132 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L 132 (428)
..|++|.+|- -+.+.++.+|.+++ |++.|+..|
T Consensus 11 ~~v~~L~~MG--F~~~~a~~AL~~~~-n~e~A~~~L 43 (47)
T 2ekk_A 11 QQLQQLMDMG--FTREHAMEALLNTS-TMEQATEYL 43 (47)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHSC-SHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHcC-CHHHHHHHH
Confidence 6799999983 55677788888885 999999877
No 51
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=30.31 E-value=53 Score=27.94 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=31.4
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~ 134 (428)
-.+..|.+|= -+.++|+.+|...+||+++|+..|=+
T Consensus 78 ~~v~~L~eMG--F~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 78 QLMSKFKEMG--FELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3588888884 89999999999999999999998854
No 52
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=30.14 E-value=31 Score=29.95 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=25.7
Q ss_pred eEEEEEccCCCCCCCCCchHHHHHHHHHcCCeeee
Q 014250 379 SLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDE 413 (428)
Q Consensus 379 ~L~VITGrG~HS~G~arLkpAV~~fL~e~Gyrf~E 413 (428)
.=.||.|.|.... .++|+++++|.+.|+.++.
T Consensus 68 pevliiGTG~~~~---~l~p~l~~~l~~~GI~vE~ 99 (135)
T 2fvt_A 68 IDTLIVGTGADVW---IAPRQLREALRGVNVVLDT 99 (135)
T ss_dssp CSEEEEECTTSCC---CCCHHHHHHHHTTTCEEEE
T ss_pred CCEEEEcCCCCCC---cCCHHHHHHHHHcCCEEEE
Confidence 4457788887553 5899999999999999864
No 53
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.22 E-value=78 Score=24.07 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=28.6
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhc-cHHHHHHHHHh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAVDN-DIKRASNLLEG 134 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av~~-d~~~a~~~L~~ 134 (428)
..|++|.+| .-+.+.++-+|.+++| |++.|+..|-.
T Consensus 11 ~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 11 SLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp SSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 468999998 4666778888888877 99999987743
No 54
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=25.55 E-value=21 Score=35.94 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHh
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~ 134 (428)
...+|++|+.| ..+..++.-+|.+|++|.+.|..+|=.
T Consensus 325 e~eaI~rL~~m--GF~~~~a~~al~a~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 325 EKEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 362 (368)
T ss_dssp THHHHHHHHHH--TCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 34789999999 578888888999999999999888743
No 55
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=25.32 E-value=97 Score=26.53 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014250 240 RKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKAR 277 (428)
Q Consensus 240 RkeA~k~~r~R~~~~~~A~~Af~rGd~~~Ak~lS~~Ar 277 (428)
|+++..+.+.....++.|..++..|+...|-.+++||=
T Consensus 6 ~ee~~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~ 43 (141)
T 3o10_A 6 PVEARRWLRQARANFSAARNDLHKNANEWVCFKCYLST 43 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhHHhhHHhhCccceEeeehhHHH
Confidence 67888899999999999999999999888887777654
No 56
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.96 E-value=84 Score=25.15 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=26.4
Q ss_pred HHHHHHHHhccccchhHHHHHHHHh-hccHHHHHHHHHh
Q 014250 97 LALKKLKALHSWADNSLIEDLMEAV-DNDIKRASNLLEG 134 (428)
Q Consensus 97 ~~~~~L~~~~~wad~~li~dv~~av-~~d~~~a~~~L~~ 134 (428)
..|++|.+|- -+...++-+|.++ |+|++.|+..|=.
T Consensus 31 ~~v~~L~~MG--F~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 31 EIVAQLVSMG--FSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HHHHHHHHHT--CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 6899999993 4455566665555 5799999988744
No 57
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=24.93 E-value=73 Score=30.38 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHH
Q 014250 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (428)
Q Consensus 95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~ 133 (428)
.+.+|++|++| ..+.+.+..+|...+.|.++|+..|=
T Consensus 215 ~~~~v~~l~~m--gf~~~~~~~al~~~nWd~~~A~e~L~ 251 (253)
T 3e46_A 215 YTKKIENLCAA--GFDRNAVIVALSSKSWDVETATELLL 251 (253)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 56899999999 56777778899999999999998873
No 58
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=24.37 E-value=2.5e+02 Score=23.38 Aligned_cols=38 Identities=21% Similarity=0.082 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 014250 247 MRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAE 284 (428)
Q Consensus 247 ~r~R~~~~~~A~~Af~rGd~~~Ak~lS~~Ar~~~~~ae 284 (428)
+......|.+|..|...++...|..|.+++.--...++
T Consensus 31 l~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAe 68 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAE 68 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHH
Confidence 45667788999999999999999999999976555443
No 59
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=23.86 E-value=1.1e+02 Score=24.19 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=48.0
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEEEc
Q 014250 306 KLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITG 385 (428)
Q Consensus 306 ~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VITG 385 (428)
+||+-|+.-..-+-.++..|..+. +.| ..|.|++-
T Consensus 3 ~lD~rGl~CP~Pvl~~kkal~~l~----------------~~G-----------------------------~~L~V~~d 37 (87)
T 3hz7_A 3 TIDALGQVCPIPVIRAKKALAELG----------------EAG-----------------------------GVVTVLVD 37 (87)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTTG----------------GGC-----------------------------CEEEEEES
T ss_pred EEEcCCCCCCHHHHHHHHHHHhcc----------------CCC-----------------------------CEEEEEEC
Confidence 589999999999888888887531 012 25888774
Q ss_pred cCCCCCCCCCchHHHHHHHHHcCCeee--eCCCeEEEEeeec
Q 014250 386 IGNHSRGQAALPTAVKNFLSESGYRFD--EARPGVITVRPKF 425 (428)
Q Consensus 386 rG~HS~G~arLkpAV~~fL~e~Gyrf~--E~~pGvI~V~~k~ 425 (428)
-.. -..-|..|+.+.||.+. +...|.+.|+.++
T Consensus 38 d~~-------a~~dI~~~~~~~G~~v~~~~~~~g~~~i~I~K 72 (87)
T 3hz7_A 38 NDI-------SRQNLQKMAEGMGYQSEYLEKDNGVIEVTIVA 72 (87)
T ss_dssp SHH-------HHHHHHHHHHHHTCEEEEEECGGGCEEEEEES
T ss_pred Ccc-------HHHHHHHHHHHCCCEEEEEEecCCEEEEEEEE
Confidence 321 23468999999999985 3467877776643
No 60
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=23.30 E-value=2.4e+02 Score=21.18 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 014250 238 VHRKDAMKMMRSASQHSKAANNAYLRGDH 266 (428)
Q Consensus 238 ~~RkeA~k~~r~R~~~~~~A~~Af~rGd~ 266 (428)
.+|.+|.++...+.++...|+.-..-|.+
T Consensus 3 klreeaaklfeewkklaeeaakllegggg 31 (62)
T 2i7u_A 3 KLREEAAKLFEEWKKLAEEAAKLLEGGGG 31 (62)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999988888776653
No 61
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=22.37 E-value=53 Score=29.35 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=25.2
Q ss_pred eEEEEEccCCCCCCCCCchHHHHHHHHHcCCeeee
Q 014250 379 SLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDE 413 (428)
Q Consensus 379 ~L~VITGrG~HS~G~arLkpAV~~fL~e~Gyrf~E 413 (428)
.=.||.|.|..- ..|+|+++++|.+.|+.++.
T Consensus 89 pEvliiGTG~~~---~~l~p~~~~~L~~~GIgvE~ 120 (150)
T 3cpk_A 89 PEVLLVGTGRRQ---HLLGPEQVRPLLAMGVGVEA 120 (150)
T ss_dssp CSEEEEECTTSC---CCCCHHHHHHHHTTTCEEEE
T ss_pred CCEEEEcCCCCC---CCCCHHHHHHHHHcCCEEEE
Confidence 345677777754 37899999999999999864
No 62
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=20.52 E-value=65 Score=23.60 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHhhccHHHHHHHHH
Q 014250 109 ADNSLIEDLMEAVDNDIKRASNLLE 133 (428)
Q Consensus 109 ad~~li~dv~~av~~d~~~a~~~L~ 133 (428)
.+..+|..+|..+++++.+|..+|.
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 5788999999999999999988874
Done!