Query 014251
Match_columns 428
No_of_seqs 162 out of 1282
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 08:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 2.1E-98 7E-103 765.1 51.5 419 4-427 1-435 (435)
2 1w63_M Adaptor-related protein 100.0 1.6E-99 6E-104 770.8 41.7 421 3-427 1-422 (423)
3 1i31_A Clathrin coat assembly 100.0 4.1E-73 1.4E-77 553.6 30.5 298 127-427 1-314 (314)
4 4en2_M AP-1 complex subunit MU 100.0 5.1E-71 1.7E-75 525.6 29.0 265 160-427 1-265 (266)
5 3ml6_A Chimeric complex betwee 100.0 5.5E-68 1.9E-72 528.5 30.8 306 115-427 63-385 (385)
6 3l81_A AP-4 complex subunit MU 100.0 6.6E-68 2.3E-72 512.0 28.8 270 151-427 14-301 (301)
7 1w63_Q Adapter-related protein 100.0 6E-32 2.1E-36 237.4 16.1 139 4-145 1-142 (158)
8 2vgl_S AP-2 complex subunit si 100.0 4.9E-31 1.7E-35 227.9 14.8 135 4-141 1-139 (142)
9 3tjz_C Coatomer subunit zeta-1 100.0 2.9E-29 9.9E-34 218.3 17.7 134 3-142 11-150 (153)
10 3g9h_A Suppressor of yeast pro 99.1 1.4E-07 4.9E-12 89.9 27.8 225 170-424 67-325 (328)
11 2nut_C Vesicle-trafficking pro 94.1 0.66 2.3E-05 41.0 12.3 97 3-99 1-101 (196)
12 4b93_A Vesicle-associated memb 93.1 1.1 3.6E-05 39.5 11.8 90 5-100 4-93 (189)
13 3bw6_A Synaptobrevin homolog Y 92.5 1.9 6.6E-05 36.0 12.1 97 1-99 3-110 (144)
14 4afi_A AP-3 complex subunit de 92.1 3.5 0.00012 35.6 13.5 90 5-100 56-145 (173)
15 3cue_A Transport protein parti 91.7 2.7 9.3E-05 37.6 12.5 25 3-27 1-25 (219)
16 1nrj_A Signal recognition part 91.4 3.9 0.00013 33.7 12.0 72 4-75 1-92 (158)
17 2vx8_A Nucleoporin-like protei 91.0 1.3 4.4E-05 38.2 9.5 92 4-100 44-135 (169)
18 3cpt_A Mitogen-activated prote 89.7 4.8 0.00016 33.4 11.3 92 5-96 38-135 (143)
19 2fh5_A Signal recognition part 88.9 3.9 0.00013 35.6 10.8 94 3-99 9-104 (185)
20 2j3t_C Trafficking protein par 88.6 2 6.9E-05 36.0 8.6 91 3-97 1-108 (145)
21 2j3w_A Sedlin, trafficking pro 88.5 5.3 0.00018 33.1 11.2 93 5-99 6-113 (142)
22 3cue_C Transport protein parti 82.1 3.5 0.00012 35.1 7.0 91 3-97 1-114 (159)
23 3kyq_A YKT6, synaptobrevin hom 82.0 12 0.0004 33.0 10.7 93 5-99 4-107 (199)
24 2j3t_D Trafficking protein par 30.9 37 0.0013 30.2 3.6 20 5-24 3-22 (219)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=2.1e-98 Score=765.11 Aligned_cols=419 Identities=40% Similarity=0.754 Sum_probs=368.1
Q ss_pred ceEEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q 014251 4 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASI 83 (428)
Q Consensus 4 Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~~n~~~~ 83 (428)
||+++||+|++|+++++|+|+++.++..++.|++++....+ ...+|++++++++|+|+++++|||+|+++.++||+++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~--~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 78 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ--QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV 78 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSS--CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhcccc--CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 89999999999999999999998888889999999886542 2579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecchHHHhhhccCccccccc-----ccCCCCccccc
Q 014251 84 LLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEV-----TQRPPMAVTNA 158 (428)
Q Consensus 84 ~~~L~~~~~~l~~~~~~l~e~~i~~N~~~i~~lldeiid~G~p~~t~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~ 158 (428)
++|||+|+++|++||++++|++|++||++||++||||+|+|+|++|+++.|++++.++++..+. ...+|++.+++
T Consensus 79 le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (435)
T 2vgl_M 79 FEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQ 158 (435)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999987653 12445667788
Q ss_pred cccccCCCCcccceEEEEEEEeEeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhccCCC-----C--CC
Q 014251 159 VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRS-----T--KG 231 (428)
Q Consensus 159 ~~wR~~~~~~~~nEI~vdV~E~i~~~~~~~G~v~~~~I~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~~-----~--~~ 231 (428)
+|||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|+|+|+|+||++..++.++++ + ..
T Consensus 159 i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~ 238 (435)
T 2vgl_M 159 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 238 (435)
T ss_dssp CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC----------------
T ss_pred cccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998665433211 0 12
Q ss_pred ceEEecccceeeeeccccccCCceEEEeCCCCceEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeccCCCcceee
Q 014251 232 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTAT 311 (428)
Q Consensus 232 ~~i~l~d~~fH~cV~~~~~~~~~~l~F~PPdG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 311 (428)
.++.|+||+|||||++++|+++|.|+|+||||+|+||+||++.+..||+.+.|++++.+++++||+++++++++.+..++
T Consensus 239 ~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~ 318 (435)
T 2vgl_M 239 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ 318 (435)
T ss_dssp -CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEE
T ss_pred CceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceee
Confidence 46789999999999999999999999999999999999999887765556789998776679999999999999888899
Q ss_pred eEEEEecCCCCCCCceEEecceeEEEeCCCCeEEEEeceeCCCcceEEEEEEEecCCCccccCCCCCCceEEEEEeCcee
Q 014251 312 NVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFT 391 (428)
Q Consensus 312 ~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~ip~~t 391 (428)
||.|+||+|+++..+.++++.|+++|++++++++|+|++++|+++++++|++++++......+ .++||+|+|++| ++
T Consensus 319 ~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~--~~~pi~v~F~i~-~t 395 (435)
T 2vgl_M 319 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FA 395 (435)
T ss_dssp EEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCC--CCCCEEEEEEES-SC
T ss_pred EEEEEEECCCCCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCccc--CCCcEEEEEEEE-ec
Confidence 999999999999999999999999999999999999999999999999999999874323334 689999999999 99
Q ss_pred ccccEEEEEEEEEc----CCCCcccceEEEEEeccEEEEc
Q 014251 392 VSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELRL 427 (428)
Q Consensus 392 ~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~y~~R~ 427 (428)
+|||+|++|+|.++ ++|+|+|||||+|+||+|++|+
T Consensus 396 ~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~ 435 (435)
T 2vgl_M 396 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435 (435)
T ss_dssp TTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred ccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence 99999999999986 5899999999999999999995
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.6e-99 Score=770.77 Aligned_cols=421 Identities=62% Similarity=1.101 Sum_probs=367.2
Q ss_pred cceEEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCCCCHHH
Q 014251 3 GAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAAS 82 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~~n~~~ 82 (428)
|||+++||+|++|+++++|+|+++.++..++.|.+++..+.+. +..+|++++++++|+|+++++|||+|+++.++||++
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~-~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEE-GMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHT-SCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 5999999999999999999999988888889999998865321 257899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecchHHHhhhccCccccccccc-CCCCcccccccc
Q 014251 83 ILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQ-RPPMAVTNAVSW 161 (428)
Q Consensus 83 ~~~~L~~~~~~l~~~~~~l~e~~i~~N~~~i~~lldeiid~G~p~~t~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~~~w 161 (428)
+++|||+|+++|++||+.++|++|++||++||++||||+|+|+|++|+++.|+++|.++++..+.++ .++++.++++||
T Consensus 80 ~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~w 159 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSW 159 (423)
T ss_dssp HHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC-----------CCS
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccccccCCcccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998732222 455566788999
Q ss_pred ccCCCCcccceEEEEEEEeEeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhccCCCCCCceEEecccce
Q 014251 162 RSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKF 241 (428)
Q Consensus 162 R~~~~~~~~nEI~vdV~E~i~~~~~~~G~v~~~~I~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~i~l~d~~f 241 (428)
|+.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|+|+|+|+||++..++..++ +..+++.++||+|
T Consensus 160 r~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~-~~~~~v~l~d~~f 238 (423)
T 1w63_M 160 RSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDVKF 238 (423)
T ss_dssp SCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC--------------CEEEEEE
T ss_pred cccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc-cccCceEcccccc
Confidence 999999999999999999999999999999999999999999999999999999999876654332 2345678999999
Q ss_pred eeeeccccccCCceEEEeCCCCceEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeccCCCcceeeeEEEEecCCC
Q 014251 242 HQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPA 321 (428)
Q Consensus 242 H~cV~~~~~~~~~~l~F~PPdG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~v~v~ip~P~ 321 (428)
||||++++|+++|.|+|+||||+|+||+||++.+..||+.+.|+++..+++++||+++++++++.+..++||.|+||+|+
T Consensus 239 HpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~ 318 (423)
T 1w63_M 239 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPN 318 (423)
T ss_dssp CTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSEEESCEEEEECCT
T ss_pred cccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcceeeEEEEEEeCCC
Confidence 99999999999999999999999999999998877666667899987667799999999999998888999999999999
Q ss_pred CCCCceEEecceeEEEeCCCCeEEEEeceeCCCcceEEEEEEEecCCCccccCCCCCCceEEEEEeCceeccccEEEEEE
Q 014251 322 DATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLK 401 (428)
Q Consensus 322 ~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~ 401 (428)
++..+.++++.|+++|++++++++|+|++++|+++++++|++++++......+ .++||+|+|++|++++||++|++|+
T Consensus 319 ~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~~~~~--~~~pi~v~F~i~~~t~Sgl~V~~l~ 396 (423)
T 1w63_M 319 DADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKE--GKPPISVKFEIPYFTTSGIQVRYLK 396 (423)
T ss_dssp TCCCCEEEESSSEEEEETGGGEEEEECSEEETTCEEEEEEEEEC------------CCCEEEEBCCSSCCTTCCCEEEEE
T ss_pred CcccceEEecCccEEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCccccc--CCCcEEEEEEECCEeCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999764322233 7899999999999999999999999
Q ss_pred EEEcCCCCcccceEEEEEeccEEEEc
Q 014251 402 IIEKSGYQALPWVRYITMAGEYELRL 427 (428)
Q Consensus 402 v~~~~~~~~~k~vrY~t~sg~y~~R~ 427 (428)
|.++.+|+|+|||||+|+||+|++|+
T Consensus 397 v~~~~~y~~~kwVrY~t~sg~y~~R~ 422 (423)
T 1w63_M 397 IIEKSGYQAIPWVRYITQNGDYQLRT 422 (423)
T ss_dssp EECSSCCCCEEEEEEEEEBSCEEECC
T ss_pred eEccCCCCCcCceEEEEeCCcEEEec
Confidence 99877899999999999999999996
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=4.1e-73 Score=553.64 Aligned_cols=298 Identities=40% Similarity=0.769 Sum_probs=235.0
Q ss_pred eecchHHHhhhccCccccccc-----ccCCCCccccccccccCCCCcccceEEEEEEEeEeEEEeccCcEEEEEEEEEEE
Q 014251 127 QFTEAKILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALK 201 (428)
Q Consensus 127 ~~t~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~~~wR~~~~~~~~nEI~vdV~E~i~~~~~~~G~v~~~~I~G~I~ 201 (428)
|.|+++.||++|..+++..+. ...+|++.++++|||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 679999999999999876532 235667788999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeccchhhhccCCC-------CCCceEEecccceeeeeccccccCCceEEEeCCCCceEEEEEEecC
Q 014251 202 MRTYLSGMPECKLGLNDRVLLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLST 274 (428)
Q Consensus 202 ~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~i~l~d~~fH~cV~~~~~~~~~~l~F~PPdG~f~Lm~Yr~~~ 274 (428)
|+|+|+|+|+|+|+||+...++.++.+ ...+++.|+||+|||||++++|+++|.|+|+||||+|+||+||++.
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~ 160 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK 160 (314)
T ss_dssp EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS
T ss_pred EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC
Confidence 999999999999999998766543221 0134678999999999999999999999999999999999999988
Q ss_pred CCCCcEEEEEEEEEccceEEEEEEEeeccCCCcceeeeEEEEecCCCCCCCceEEecceeEEEeCCCCeEEEEeceeCCC
Q 014251 275 QVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGN 354 (428)
Q Consensus 275 ~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~ 354 (428)
+..||+.+.|+++..+++++||+++++++|+.+..++||.|+||+|+++..+.++++.|+++|++++++++|+|++++|+
T Consensus 161 ~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~g~ 240 (314)
T 1i31_A 161 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGM 240 (314)
T ss_dssp SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEEEEEEEEEESS
T ss_pred CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceEEEecCCCEEEEEeCcCCCC
Confidence 77555567899988766799999999999999889999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEecCCCccccCCCCCCceEEEEEeCceeccccEEEEEEEEEc----CCCCcccceEEEEEeccEEEEc
Q 014251 355 KEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELRL 427 (428)
Q Consensus 355 ~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~y~~R~ 427 (428)
.+++|+|++++++......+ .++||+|+|++| +++|||+|++|+|.++ ++|+|+|||||+|+||+|++|+
T Consensus 241 ~e~~l~~~~~l~s~~~~~~~--~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~~R~ 314 (314)
T 1i31_A 241 KESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 314 (314)
T ss_dssp EEEEEEEEEEECCCCSSSCC--CCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEEECC
T ss_pred CcEEEEEEEEecCCCcCCcc--CCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEEEcC
Confidence 99999999999874322333 699999999999 9999999999999985 5899999999999999999995
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=5.1e-71 Score=525.64 Aligned_cols=265 Identities=69% Similarity=1.214 Sum_probs=240.8
Q ss_pred ccccCCCCcccceEEEEEEEeEeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhccCCCCCCceEEeccc
Q 014251 160 SWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDI 239 (428)
Q Consensus 160 ~wR~~~~~~~~nEI~vdV~E~i~~~~~~~G~v~~~~I~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~i~l~d~ 239 (428)
+||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|+|+|+|+||++..++..++ +..+++.++||
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~-~~~~~~~l~d~ 79 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDV 79 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTC-TTSCCBCCEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccc-cccCccCcccc
Confidence 69999999999999999999999999999999999999999999999999999999999987765543 23456789999
Q ss_pred ceeeeeccccccCCceEEEeCCCCceEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeccCCCcceeeeEEEEecC
Q 014251 240 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPV 319 (428)
Q Consensus 240 ~fH~cV~~~~~~~~~~l~F~PPdG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~v~v~ip~ 319 (428)
+|||||++++|+++|.|+|+||||+|+||+||++.+..||+.+.|+++..+++++++.++++++++.+..++||.|+||+
T Consensus 80 ~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~I~IP~ 159 (266)
T 4en2_M 80 KFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPV 159 (266)
T ss_dssp EECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEEEEEEC
T ss_pred ccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEEEEECC
Confidence 99999999999999999999999999999999988877777888999887678999999999999999999999999999
Q ss_pred CCCCCCceEEecceeEEEeCCCCeEEEEeceeCCCcceEEEEEEEecCCCccccCCCCCCceEEEEEeCceeccccEEEE
Q 014251 320 PADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRY 399 (428)
Q Consensus 320 P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~ 399 (428)
|+++..+.+.++.|+++|++++++++|+|++++|++++++++++++++....+.+ .++||+|+|++|++++|||+|++
T Consensus 160 P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~~~--~~~pI~v~F~ip~~t~SGl~V~~ 237 (266)
T 4en2_M 160 PNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKE--GKPPISVKFEIPYFTTSGIQVRY 237 (266)
T ss_dssp CTTCEEEEEEESSSEEEEETTTTEEEEEEEEEESSCEEEEEEEEEC------------CCCEEEEEEEESEESSCCCEEE
T ss_pred CCCcCcceEEecCceEEEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCCcc--cCCcEEEEEEeCCceeCCcEEEE
Confidence 9999999999999999999999999999999999999999999999875333334 78999999999999999999999
Q ss_pred EEEEEcCCCCcccceEEEEEeccEEEEc
Q 014251 400 LKIIEKSGYQALPWVRYITMAGEYELRL 427 (428)
Q Consensus 400 l~v~~~~~~~~~k~vrY~t~sg~y~~R~ 427 (428)
|+|.++.+|+|+|||||+|+||+|++|+
T Consensus 238 L~v~e~~~y~~~kwVrY~T~sg~y~~R~ 265 (266)
T 4en2_M 238 LKIIEKSGYQALPWVRYITQNGDYQLRT 265 (266)
T ss_dssp EEEECSSCCCEEEEEEEEEECSSEEECC
T ss_pred EEeeccCCCCCCCCEEEEEeCCCEEEec
Confidence 9999878999999999999999999996
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=5.5e-68 Score=528.53 Aligned_cols=306 Identities=37% Similarity=0.694 Sum_probs=249.4
Q ss_pred HHHHHHhcCCeeeecchHHHhhhccCcccccccc--cCCCCccccc-ccc---ccCCCCcccceEEEEEEEeEeEEEecc
Q 014251 115 ELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVT--QRPPMAVTNA-VSW---RSEGIRYKKNEVFLDVVESVNILVNSN 188 (428)
Q Consensus 115 ~lldeiid~G~p~~t~~~~l~~~i~~~~~~~~~~--~~~~~~~~~~-~~w---R~~~~~~~~nEI~vdV~E~i~~~~~~~ 188 (428)
.+-..+++.|+.+-+.-.. .+. +...-... ...|...+++ +|| |+.|++|++|||||||+|+|+++++++
T Consensus 63 ~~g~~Ll~~G~i~hv~~~~--~F~--d~~~y~f~~~~~~~~~~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~ 138 (385)
T 3ml6_A 63 KYASGLLKAGLIRHTVNKI--TFS--EQCYYVFGDLSGGPRPYSPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQ 138 (385)
T ss_dssp HHHHHHHHHSSEEESSSCS--SCC--SSSEEEECCCCC------CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTT
T ss_pred HHHHHHHhCCcEEEcCCcc--eec--CcceEEeeccccccCccCCCCCCchhccccCCccccceEEEEEEEEEEEEECCC
Confidence 4556777889877654111 010 00000000 1222333344 499 789999999999999999999999999
Q ss_pred CcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhccCCC-------CCCceEEecccceeeeeccccccCCceEEEeCC
Q 014251 189 GQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPP 261 (428)
Q Consensus 189 G~v~~~~I~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~i~l~d~~fH~cV~~~~~~~~~~l~F~PP 261 (428)
|.+++++|.|+|.|+|+|+|+|+|+|+||+...++..++. +..+++.|+||+|||||++++|+++|.|+|+||
T Consensus 139 G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPP 218 (385)
T 3ml6_A 139 GQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPP 218 (385)
T ss_dssp SCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------------CCCCEEEECTTBCCCCSSSCSEEEECCC
T ss_pred CCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccccccccCceEccccccccccChhHccccceEEEeCC
Confidence 9999999999999999999999999999998766543321 123467899999999999999999999999999
Q ss_pred CCceEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeccCCCcceeeeEEEEecCCCCCCCceEEecceeEEEeCCC
Q 014251 262 DGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPEN 341 (428)
Q Consensus 262 dG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~ 341 (428)
||+|+||+||++.+..||+.+.|++++.+++++|++++++++|+.++.+++|.|+||+|+++.++++.++.|+++|++++
T Consensus 219 Dg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~ 298 (385)
T 3ml6_A 219 DGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 298 (385)
T ss_dssp SEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEECSCTTCCEEEEEEEEECCTTEEEEEEEESSSEEEEEGGG
T ss_pred CCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeecCCCcceEEEEEEEecCCCCcccceEEecCceEEEeccC
Confidence 99999999999887755556789999887789999999999999999999999999999999899999999999999999
Q ss_pred CeEEEEeceeCCCcceEEEEEEEecCCCccccCCCCCCceEEEEEeCceeccccEEEEEEEEEc----CCCCcccceEEE
Q 014251 342 DALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYI 417 (428)
Q Consensus 342 ~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~----~~~~~~k~vrY~ 417 (428)
++++|+|++++|+++++|+|+|++++......+ .++||+|+|++| +++|||+|++|+|.++ ++|+|+|||||+
T Consensus 299 ~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~~~--~~~PI~v~F~Ip-~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYi 375 (385)
T 3ml6_A 299 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYI 375 (385)
T ss_dssp TEEEEEEEEECSSEEEEEEEEEEECCCSSCCSC--CCCCEEEEEEES-SCTTCCCEEEEEEECSSSCCCGGGCEEEEEEC
T ss_pred cEEEEEeeeECCCcceEEEEEEEECCCCCCccc--cCCCEEEEEEEe-ccccCCEEEEEEEecccCcccCCCccccEEEE
Confidence 999999999999999999999999864333334 799999999999 9999999999999886 578999999999
Q ss_pred EEeccEEEEc
Q 014251 418 TMAGEYELRL 427 (428)
Q Consensus 418 t~sg~y~~R~ 427 (428)
|+||+|++|+
T Consensus 376 T~sg~Y~~R~ 385 (385)
T 3ml6_A 376 GRSGIYETRC 385 (385)
T ss_dssp EEEEEEEECC
T ss_pred EECCCEEecC
Confidence 9999999995
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=6.6e-68 Score=511.97 Aligned_cols=270 Identities=29% Similarity=0.561 Sum_probs=222.9
Q ss_pred CCCcccccc-ccccCCCCcccceEEEEEEEeEeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhccCCCC
Q 014251 151 PPMAVTNAV-SWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRST 229 (428)
Q Consensus 151 ~~~~~~~~~-~wR~~~~~~~~nEI~vdV~E~i~~~~~~~G~v~~~~I~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~~~ 229 (428)
++.++++++ |||+. +|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|+|+|+|+||++..+++.+...
T Consensus 14 ~~~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~ 91 (301)
T 3l81_A 14 PSSAASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRG 91 (301)
T ss_dssp ---------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTC
T ss_pred CchhhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccccccc
Confidence 445666665 99985 899999999999999999999999999999999999999999999999999988766544333
Q ss_pred CCceEEecccceeeeeccccccCCceEEEeCCCCceEEEEEEecCCC---CCcEEEEEEEEEccc-eEEEEEEEeeccCC
Q 014251 230 KGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQV---KPLIWVEAQIERHSR-SRIEIMVKARSQFK 305 (428)
Q Consensus 230 ~~~~i~l~d~~fH~cV~~~~~~~~~~l~F~PPdG~f~Lm~Yr~~~~~---~P~~~v~~~~~~~~~-~~~e~~l~~~~~~~ 305 (428)
..+++.|+||+|||||++++|+++|.|+|+||||+|+||+||++.+. +|+ .+.|+++..++ +++||+++++++|+
T Consensus 92 ~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~-~v~~~v~~~~~~~~ie~~l~l~~~f~ 170 (301)
T 3l81_A 92 YGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPF-RLFPSVQWDRGSGRLQVYLKLRCDLL 170 (301)
T ss_dssp CCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSE-EEEEEEEECTTTSEEEEEEEEEECSC
T ss_pred ccCceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCE-EEEEEEEECCCcEEEEEEEEEecCCC
Confidence 44678899999999999999999999999999999999999998764 555 46799998654 79999999999999
Q ss_pred CcceeeeEEEEecCCCCCCCce--EEecceeEEEeCCCCeEEEEeceeCCCcceEEEEEEEecCCCccc---------cC
Q 014251 306 ERSTATNVEIELPVPADATNPN--VRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEE---------AA 374 (428)
Q Consensus 306 ~~~~~~~v~v~ip~P~~~~~~~--~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~---------~~ 374 (428)
.+..++||.|+||+|+++.++. +.++.|+++| ++++++|+|++++|+++.++++++++++..+.+ .+
T Consensus 171 ~~~~~~nV~I~IPvP~~~~~~~~~~~~~~G~~~y--~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~ 248 (301)
T 3l81_A 171 SKSQALNVRLHLPLPRGVVSLSQELSSPEQKAEL--AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPL 248 (301)
T ss_dssp TTCEEEEEEEEEECCTTCEEEEEEESSTTCEEEE--ETTEEEEEECCEETTCEEEEEEEEECCCCCC------------C
T ss_pred CCcEEEEEEEEEcCCCCcccceEEEeecCceEEE--eCcEEEEEEeeECCCcEEeEEEEEEecCCccccccccccccccc
Confidence 9999999999999999998888 5578899999 999999999999999999999999987643321 23
Q ss_pred CCCCCceEEEEEeCceeccccEEEEEEEEEc--CCCCcccceEEEEEeccEEEEc
Q 014251 375 PERKAPIRVKFEIPYFTVSGIQVRYLKIIEK--SGYQALPWVRYITMAGEYELRL 427 (428)
Q Consensus 375 ~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~--~~~~~~k~vrY~t~sg~y~~R~ 427 (428)
.++||+|+|++|++++|||+|++|+|.++ .+|+|+|||||+|+||+|++|+
T Consensus 249 --~~~PI~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~~R~ 301 (301)
T 3l81_A 249 --GLGPASLSFELPRHTCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVIRI 301 (301)
T ss_dssp --CCCCEEEEEEEETCCSSCCCEEEEEEEC-------CEEEEEEEEEEEEEEECC
T ss_pred --cCCCEEEEEEeCCccccCcEEEEEEEecccccCCCCccceEEEEeCCcEEEcC
Confidence 78999999999999999999999999985 3689999999999999999995
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.98 E-value=6e-32 Score=237.37 Aligned_cols=139 Identities=17% Similarity=0.211 Sum_probs=128.9
Q ss_pred ceEEEEEEcCCCCEEEEEccCCCCCh---hHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCCCCH
Q 014251 4 AASALFLLDIKGRVLIWRDYRGDVSA---IQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNA 80 (428)
Q Consensus 4 Mi~~i~Il~~~G~~l~~r~y~~~~~~---~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~~n~ 80 (428)
||+++||+|++|+++++|+|+++.++ ...+.|++++.+++ .+.+|+++.++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne 77 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARK---PKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE 77 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSC---SSSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccC---CCCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 89999999999999999999987665 46678888887654 3579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecchHHHhhhccCccccc
Q 014251 81 ASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRM 145 (428)
Q Consensus 81 ~~~~~~L~~~~~~l~~~~~~l~e~~i~~N~~~i~~lldeiid~G~p~~t~~~~l~~~i~~~~~~~ 145 (428)
+++++|||+++++|++|||+++|++|++||+++|++||||+|+|+|++|+++.|+++|.+++...
T Consensus 78 l~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~ 142 (158)
T 1w63_Q 78 LITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQ 142 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999876643
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.97 E-value=4.9e-31 Score=227.89 Aligned_cols=135 Identities=18% Similarity=0.231 Sum_probs=122.8
Q ss_pred ceEEEEEEcCCCCEEEEEccCCC---CChhHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCCCCH
Q 014251 4 AASALFLLDIKGRVLIWRDYRGD---VSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNA 80 (428)
Q Consensus 4 Mi~~i~Il~~~G~~l~~r~y~~~---~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~~n~ 80 (428)
||++++|+|++|+++++|+|++. ..+...+.|++++..++ .+.+|+++.++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~---~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~ 77 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRD---AKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN 77 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCC---TTSCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCC---CCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence 89999999999999999999943 22457789999988653 3589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecc-hHHHhhhccCc
Q 014251 81 ASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTE-AKILSEFIKTD 141 (428)
Q Consensus 81 ~~~~~~L~~~~~~l~~~~~~l~e~~i~~N~~~i~~lldeiid~G~p~~t~-~~~l~~~i~~~ 141 (428)
+++++|||+++++|++|||+++|++|++||+++|++||||+|+|+|++|+ .+.|+.++.++
T Consensus 78 l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 78 LAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999995 67788887654
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.96 E-value=2.9e-29 Score=218.26 Aligned_cols=134 Identities=17% Similarity=0.281 Sum_probs=117.2
Q ss_pred cceEEEEEEcCCCCEEEEEccCCCCC----hhHHH-HHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCC
Q 014251 3 GAASALFLLDIKGRVLIWRDYRGDVS----AIQAE-RFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQN 77 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~~~----~~~~~-~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~ 77 (428)
.||++++|+|++|+++++|||+++.+ +...+ .+++++. + ..+|++.+++++++|+++++|||+++++.+
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r-----~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~ 84 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-R-----TDSEIALLEGLTVVYKSSIDLYFYVIGSSY 84 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-S-----CCCCEEEETTEEEEEEECSSCEEEEEEETT
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-----CCCCEEEECCEEEEEEEECCEEEEEEEcCC
Confidence 49999999999999999999998643 23233 4556552 2 237999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-hhhcHHHHHhhHHHHHHHHHHHhcCCeeeecchHHHhhhccCcc
Q 014251 78 CNAASILLFLHRVADVFKHYF-EELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDA 142 (428)
Q Consensus 78 ~n~~~~~~~L~~~~~~l~~~~-~~l~e~~i~~N~~~i~~lldeiid~G~p~~t~~~~l~~~i~~~~ 142 (428)
+|+++++++||+++++|+.|| ++++|++|++||+++|++||||+|+|+||+|+++.+...+...+
T Consensus 85 eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 999999999999999999999 78999999999999999999999999999999999999988653
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.4e-07 Score=89.94 Aligned_cols=225 Identities=18% Similarity=0.338 Sum_probs=140.6
Q ss_pred cceEEEEEEEeEeEEEeccCcEEEEEEEEEEEEEEEecC-------CCeEEEEeccchhhhccCCCCCCceEEeccccee
Q 014251 170 KNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSG-------MPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFH 242 (428)
Q Consensus 170 ~nEI~vdV~E~i~~~~~~~G~v~~~~I~G~I~~~s~LsG-------~P~~~l~ln~~~~~~~~~~~~~~~~i~l~d~~fH 242 (428)
.-++-..|.|.|||.+.. |.+.++.|.|+|.+. |..| .+.+.++|++...+++. +-+-+|-
T Consensus 67 ~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEiaLs-y~~~~~s~~p~p~~l~fRL~N~~~Lekv----------~pN~~fv 134 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFKD-GMLQNSQLIGEIALN-YLPNSVMNSPLPIGINLRINNGAKFEKV----------ILNQAFI 134 (328)
T ss_dssp CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEEEE-EECCSSSCCCCCSEEEEEEETGGGEEEE----------EECTTTE
T ss_pred CCceeEEEEEEEEEEEEC-CcEEEEEEEEEEEEe-cCCCccccCCCCccEEEEecCcchhhee----------eCCHHHh
Confidence 447888999999999976 789999999998775 4554 24578888765443321 1122222
Q ss_pred eeeccccccCCceEEEeCC---CCceEEEEEEecCCCCCcEEEEEEEEEccc-eEEEEEEEeeccCCC---cceeeeEEE
Q 014251 243 QCVRLARFENDRTISFIPP---DGSFDLMTYRLSTQVKPLIWVEAQIERHSR-SRIEIMVKARSQFKE---RSTATNVEI 315 (428)
Q Consensus 243 ~cV~~~~~~~~~~l~F~PP---dG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~-~~~e~~l~~~~~~~~---~~~~~~v~v 315 (428)
.++.-..| .|-++ ...-.+++|+++....|+.+ .|..+.... ..+-+.+++.+.++. ....+||.+
T Consensus 135 ~~~~~~eF------~vn~~~L~sktv~~lKYqVs~~~~PL~l-~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~ 207 (328)
T 3g9h_A 135 ERVAPEEF------KVNPSFIDSRTLGAIKYSIKEPIAPIVI-HPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVV 207 (328)
T ss_dssp EEEETTEE------EECTTTTBTCEEEEEEEEEESCCCSEEE-EEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEEE
T ss_pred ccCCCCCE------EEchHHhcccceeeEEEEECCCCCCeEE-EeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEEE
Confidence 22221111 11111 12256899999875677765 566555332 345555555555665 567899999
Q ss_pred EecCCCCCCCceEEecceeEEEeCCCCeEEEEece-e--CCCcc-eEEEEEEEecCCCccccCCCCCCceEEEEEeCce-
Q 014251 316 ELPVPADATNPNVRTSMGSARYAPENDALVWKIKS-F--PGNKE-YMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYF- 390 (428)
Q Consensus 316 ~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k-~--~g~~~-~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~ip~~- 390 (428)
..|+... .+....+.-.+.|..+++.+.|+|+. + ..+.+ ..|.|+|...+.. . + ....+.+.|++.+.
T Consensus 208 ~V~ldGa--~ats~qskP~gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~~-~-~---~~~gV~akF~~~~~~ 280 (328)
T 3g9h_A 208 FVNIDGA--NATSALSKPQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLA-H-E---SAKGVITKFTISETD 280 (328)
T ss_dssp EEEBCSS--CEEEEEESSSCCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEESSCC-C-B---CSSCEEEEEEECCCS
T ss_pred EEEeCCC--ceeEEEecCCceeccccCEEEEECCCCcccccCCCCCeEEEEEEcCCCC-C-C---CCCcEEEEEEEeCCC
Confidence 9999652 22222223356788999999999987 3 32223 6899999874322 1 1 22339999999875
Q ss_pred --------eccccEEEEEEEEEcCCCCcc--cce-----EEEEEeccEE
Q 014251 391 --------TVSGIQVRYLKIIEKSGYQAL--PWV-----RYITMAGEYE 424 (428)
Q Consensus 391 --------t~SGl~V~~l~v~~~~~~~~~--k~v-----rY~t~sg~y~ 424 (428)
.-|||.|......+. + || .|. |=++ +|.|+
T Consensus 281 ~~~~~~~~~gsgi~i~~~~~~~~-d--PF~~~W~~v~~~r~l~-~G~Y~ 325 (328)
T 3g9h_A 281 NVALPHSGAGSGITLTCQELDEN-N--PFGGEWLDVNTKRTLT-TGNYH 325 (328)
T ss_dssp CSSCTTTTCSCCCEEEEEEESSS-C--TTCCCCEECEEEEEEE-EEEEE
T ss_pred cccccccccCCceeEEecccccC-C--CCcCcccccceEEEEe-eeEEE
Confidence 467999988866532 2 33 464 3333 57775
No 11
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=94.05 E-value=0.66 Score=40.99 Aligned_cols=97 Identities=9% Similarity=0.107 Sum_probs=61.6
Q ss_pred cceEEEEEEcC-CCCEEEEEccCCCC---ChhHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCCC
Q 014251 3 GAASALFLLDI-KGRVLIWRDYRGDV---SAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNC 78 (428)
Q Consensus 3 ~Mi~~i~Il~~-~G~~l~~r~y~~~~---~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~~ 78 (428)
+||....|.-. +|-+|.+..-.+.. .+.....+.+.+..+-......---++.+++.|.|...+++.++|+++.+-
T Consensus 1 ~Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 1 SMVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp -CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred CceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 46666666543 56666653321111 223344555555544321011112567789899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 014251 79 NAASILLFLHRVADVFKHYFE 99 (428)
Q Consensus 79 n~~~~~~~L~~~~~~l~~~~~ 99 (428)
+.-.++.||..+.+-+..-++
T Consensus 81 p~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhcc
Confidence 999999999998877766555
No 12
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=93.10 E-value=1.1 Score=39.47 Aligned_cols=90 Identities=8% Similarity=0.155 Sum_probs=61.4
Q ss_pred eEEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCCCCHHHHH
Q 014251 5 ASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASIL 84 (428)
Q Consensus 5 i~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~~n~~~~~ 84 (428)
|--.+|. +|.++++.+=.. .+-...+-+.++.+-.. ...--.++.+++.|.|...+++.++|+++.+-+--.++
T Consensus 4 ilYa~VA--rg~~iLae~t~~---~gnf~~ia~~iL~kip~-~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af 77 (189)
T 4b93_A 4 ILFAVVA--RGTTILAKHAWC---GGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAF 77 (189)
T ss_dssp EEEEEEE--ETTEEEEEEESS---EECHHHHHHHHHTTCCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHH
T ss_pred eEEEEEE--eCCEEEEeCCCC---CCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHH
Confidence 4334443 688988875221 12233344444443211 11112567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 014251 85 LFLHRVADVFKHYFEE 100 (428)
Q Consensus 85 ~~L~~~~~~l~~~~~~ 100 (428)
.||..+.+-+..-++.
T Consensus 78 ~fL~~i~~eF~~~~~~ 93 (189)
T 4b93_A 78 SFLNEVKKRFQTTYGS 93 (189)
T ss_dssp HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999998888776664
No 13
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=92.54 E-value=1.9 Score=35.97 Aligned_cols=97 Identities=8% Similarity=0.029 Sum_probs=63.2
Q ss_pred CccceEEEEEEcCCC--CEEEEEccCC----CCChhHHHHH----HHHHhcccCCCCCCCCEEEeCCEEEEEE-EeCcEE
Q 014251 1 MAGAASALFLLDIKG--RVLIWRDYRG----DVSAIQAERF----FTKFIEKEGDPQSQNPVVFDNGVTYMFI-QHNNVY 69 (428)
Q Consensus 1 ~~~Mi~~i~Il~~~G--~~l~~r~y~~----~~~~~~~~~f----~~~i~~~~~~~~~~~pii~~~~~~~v~~-~~~~ly 69 (428)
|+|=|.++.|+-.++ -++++..+.- ...|+...+| -+.+..+... + .---++.++..+.|. ..++|.
T Consensus 3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~-~-~R~sv~~~~y~fH~~~~~~gl~ 80 (144)
T 3bw6_A 3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-G-QRQSIEEGNYIGHVYARSEGIC 80 (144)
T ss_dssp CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT-T-EEEEEEETTEEEEEEECTTSEE
T ss_pred cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC-C-ceEEEEeCCEEEEEEEecCCEE
Confidence 777888887875432 4556655431 1224444444 3445444321 1 112567788877777 678999
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Q 014251 70 LMAASRQNCNAASILLFLHRVADVFKHYFE 99 (428)
Q Consensus 70 ~v~~~~~~~n~~~~~~~L~~~~~~l~~~~~ 99 (428)
++|+++.+-.--.++.||+.+.+-...-++
T Consensus 81 ~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 81 GVLITDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999887776655444
No 14
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=92.14 E-value=3.5 Score=35.59 Aligned_cols=90 Identities=8% Similarity=0.153 Sum_probs=62.7
Q ss_pred eEEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCCCCHHHHH
Q 014251 5 ASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASIL 84 (428)
Q Consensus 5 i~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~~n~~~~~ 84 (428)
|--.+|. +|.++++.+=... +-.+.+-+.++.+... ....-.++.++..|.|...+++.++|+++.+-.--.++
T Consensus 56 I~Ya~VA--rg~tiLAE~t~~~---gnf~~va~~iL~kip~-~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF 129 (173)
T 4afi_A 56 ILFAVVA--RGTTILAKHAWCG---GNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAF 129 (173)
T ss_dssp EEEEEEE--ETTEEEEEEESSC---CCHHHHHHHHHTTSCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHH
T ss_pred EEEEEEE--CCCEEEEEccCCC---CCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHH
Confidence 4444444 6888888653221 2233555555554321 11112667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 014251 85 LFLHRVADVFKHYFEE 100 (428)
Q Consensus 85 ~~L~~~~~~l~~~~~~ 100 (428)
.||+.+.+-+..-++.
T Consensus 130 ~FLedI~~eF~~~yg~ 145 (173)
T 4afi_A 130 SFLNEVKKRFQTTYGS 145 (173)
T ss_dssp HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhch
Confidence 9999999888777764
No 15
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=91.72 E-value=2.7 Score=37.55 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=21.5
Q ss_pred cceEEEEEEcCCCCEEEEEccCCCC
Q 014251 3 GAASALFLLDIKGRVLIWRDYRGDV 27 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~~ 27 (428)
|||.+|+|+|+.|..+++|.|....
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~ 25 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDE 25 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCC
T ss_pred CeeEEEEEEeCCCCEEeehhhccCc
Confidence 5799999999999999999997443
No 16
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=91.36 E-value=3.9 Score=33.75 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=49.0
Q ss_pred ceEEEEEEcCCCCEEEEEc-cCCCCChhHHHHHHHHHhcccCC----------CCCCCCEEEe-------CCEEEEEEE-
Q 014251 4 AASALFLLDIKGRVLIWRD-YRGDVSAIQAERFFTKFIEKEGD----------PQSQNPVVFD-------NGVTYMFIQ- 64 (428)
Q Consensus 4 Mi~~i~Il~~~G~~l~~r~-y~~~~~~~~~~~f~~~i~~~~~~----------~~~~~pii~~-------~~~~~v~~~- 64 (428)
||+++.|+...|++|++.. +........+.+|..+++..+-. .+---+++.+ ++..+.|..
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 9999999999999999966 33344456788999988765321 0113357777 666666643
Q ss_pred -eCcEEEEEEec
Q 014251 65 -HNNVYLMAASR 75 (428)
Q Consensus 65 -~~~ly~v~~~~ 75 (428)
.-.||||++-.
T Consensus 81 kQP~LyfVvtya 92 (158)
T 1nrj_A 81 KQPELYFVVTFA 92 (158)
T ss_dssp ETTEEEEEEEES
T ss_pred CCCcEEEEEEec
Confidence 45799888763
No 17
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=91.00 E-value=1.3 Score=38.23 Aligned_cols=92 Identities=9% Similarity=0.177 Sum_probs=60.0
Q ss_pred ceEEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q 014251 4 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASI 83 (428)
Q Consensus 4 Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~~n~~~~ 83 (428)
|..-..++. +|.++++.+-... .......+.++.+... ...---++.++..|-|...++|.++|+++.+-.--.+
T Consensus 44 M~ilYa~Va-RG~~VLae~t~~~---gnf~~iak~ll~kl~~-~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~A 118 (169)
T 2vx8_A 44 MAILFAVVA-RGTTILAKHAWCG---GNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRA 118 (169)
T ss_dssp SCCCEEEEE-ETTEEEEEEESSC---BSHHHHHHHHHTTSCS-SCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHH
T ss_pred CceEEEEEE-cCCEEEEEeccCC---CCHHHHHHHHHhhCCC-CCCceEEEECCEEEEEEEECCEEEEEEEccccchHHH
Confidence 433333343 5667777542211 1233344444443211 0112356789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 014251 84 LLFLHRVADVFKHYFEE 100 (428)
Q Consensus 84 ~~~L~~~~~~l~~~~~~ 100 (428)
+.||+.+.+-+..-++.
T Consensus 119 F~fLedI~~eF~~~y~~ 135 (169)
T 2vx8_A 119 FSFLNEVKKRFQTTYGS 135 (169)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999888776664
No 18
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=89.69 E-value=4.8 Score=33.40 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=62.2
Q ss_pred eEEEEEEcCCCCEEEEEccCCCCC---h-hHHHHHHHHHhcccC-CCCCCCCEE-EeCCEEEEEEEeCcEEEEEEecCCC
Q 014251 5 ASALFLLDIKGRVLIWRDYRGDVS---A-IQAERFFTKFIEKEG-DPQSQNPVV-FDNGVTYMFIQHNNVYLMAASRQNC 78 (428)
Q Consensus 5 i~~i~Il~~~G~~l~~r~y~~~~~---~-~~~~~f~~~i~~~~~-~~~~~~pii-~~~~~~~v~~~~~~ly~v~~~~~~~ 78 (428)
+.+|+|.|++|-+++.-...+... + +.+..|-...-+..+ .-+++..++ .++++.+++.....|++..+++.+.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 589999999999999877654221 1 334444443322111 113444555 5788889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 014251 79 NAASILLFLHRVADVFKH 96 (428)
Q Consensus 79 n~~~~~~~L~~~~~~l~~ 96 (428)
|.=.++.+=+.+..+|.+
T Consensus 118 NtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHH
Confidence 988777776666655554
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=88.85 E-value=3.9 Score=35.60 Aligned_cols=94 Identities=11% Similarity=0.132 Sum_probs=62.7
Q ss_pred cceEEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCc--EEEEEEecCCCCH
Q 014251 3 GAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNN--VYLMAASRQNCNA 80 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~--ly~v~~~~~~~n~ 80 (428)
+|++.+.|++..|=+|-+..-......+.+.++.+.++-... ...+.+..+++..-+...|+ |.||++-..--..
T Consensus 9 ~~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L 85 (185)
T 2fh5_A 9 SMVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTL 85 (185)
T ss_dssp CSCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGH
T ss_pred cceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccc---cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccc
Confidence 699999999998888877321221223467788887765432 23456788998888888875 7888887765566
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 014251 81 ASILLFLHRVADVFKHYFE 99 (428)
Q Consensus 81 ~~~~~~L~~~~~~l~~~~~ 99 (428)
..+=+||..+...+.+-|+
T Consensus 86 ~YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 86 TYVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6777777777777666664
No 20
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=88.59 E-value=2 Score=35.96 Aligned_cols=91 Identities=11% Similarity=0.188 Sum_probs=53.4
Q ss_pred cceEEEEEEcCCCCEEEEEccCCCC----C-hhH----------HHHHHHHHhcccCCCCCCCCEEEeCCE-EEEEEEeC
Q 014251 3 GAASALFLLDIKGRVLIWRDYRGDV----S-AIQ----------AERFFTKFIEKEGDPQSQNPVVFDNGV-TYMFIQHN 66 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~~----~-~~~----------~~~f~~~i~~~~~~~~~~~pii~~~~~-~~v~~~~~ 66 (428)
||+.+++|+|++|.+|+++.|.... + .+. +..+.+++.-.+. ...--.+..++. .++|....
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~--~~~~~~~~t~~ykl~~~~T~T 78 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDM--KDGFLSFQTSRYKLHYYETPT 78 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCC--SSCEEEEECSSCEEEEEECTT
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCC--CCceEEEecCCEEEEEEEcCC
Confidence 5799999999999999999996421 1 111 1223333321110 011124455665 46667778
Q ss_pred cEEEEEEecCCCCHHHHHHHHHHHH-HHHHHH
Q 014251 67 NVYLMAASRQNCNAASILLFLHRVA-DVFKHY 97 (428)
Q Consensus 67 ~ly~v~~~~~~~n~~~~~~~L~~~~-~~l~~~ 97 (428)
++-|+++++..++. +=++|+++. ++.-+|
T Consensus 79 giKFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 79 GIKVVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp SCEEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred CCEEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 99999999876543 335555555 444443
No 21
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=88.54 E-value=5.3 Score=33.14 Aligned_cols=93 Identities=9% Similarity=0.006 Sum_probs=51.8
Q ss_pred eEEEEEEcCCCCEEEEEccCCCCCh---hHH-HHH----HHH---HhcccCCCCCCCCEEE---eCCE-EEEEEEeCcEE
Q 014251 5 ASALFLLDIKGRVLIWRDYRGDVSA---IQA-ERF----FTK---FIEKEGDPQSQNPVVF---DNGV-TYMFIQHNNVY 69 (428)
Q Consensus 5 i~~i~Il~~~G~~l~~r~y~~~~~~---~~~-~~f----~~~---i~~~~~~~~~~~pii~---~~~~-~~v~~~~~~ly 69 (428)
|.+++|+|++|++|+.+.|...... ... ..+ ... +.+.... ....-... .+++ .+.|....++-
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~-~~~~~l~~~~~~~~y~v~~~~T~tg~K 84 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWL-SNNMYLKTVDKFNEWFVSAFVTAGHMR 84 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGG-CSCSEEEEEEEETTEEEEEEECTTCCE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCC-CCcceeEeeecccceEEEEEEcCCCcE
Confidence 6899999999999999999653221 111 111 111 1111000 11112223 3343 46667778899
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Q 014251 70 LMAASRQNCNAASILLFLHRVADVFKHYFE 99 (428)
Q Consensus 70 ~v~~~~~~~n~~~~~~~L~~~~~~l~~~~~ 99 (428)
|+++++.. +...+-.+++++.++.-+|.-
T Consensus 85 fvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~ 113 (142)
T 2j3w_A 85 FIMLHDVR-QEDGIKNFFTDVYDLYIKFAM 113 (142)
T ss_dssp EEEEESSC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCC-CcHHHHHHHHHHHHHHHHHhc
Confidence 99998753 344555666666665555443
No 22
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=82.15 E-value=3.5 Score=35.09 Aligned_cols=91 Identities=7% Similarity=0.121 Sum_probs=49.8
Q ss_pred cceEEEEEEcCCCCEEEEEccCCC-------CC---h-hH----------HHHHHHHHhcccCCCCCCCCEEEeCCE-EE
Q 014251 3 GAASALFLLDIKGRVLIWRDYRGD-------VS---A-IQ----------AERFFTKFIEKEGDPQSQNPVVFDNGV-TY 60 (428)
Q Consensus 3 ~Mi~~i~Il~~~G~~l~~r~y~~~-------~~---~-~~----------~~~f~~~i~~~~~~~~~~~pii~~~~~-~~ 60 (428)
|||.+|+|+|+.|.+|++|.|... .+ . +. +..|.+++.-... ...--.+..+.. .+
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~--~~~f~~~~T~~ykl~ 78 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSV--KNDIRSISTGKYRVH 78 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSS--CCCEEEEECSSCBEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCC--CCCeEEEeeCCEEEE
Confidence 578999999999999999998431 10 1 10 1122222211100 001122334444 46
Q ss_pred EEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH-HHHHH
Q 014251 61 MFIQHNNVYLMAASRQNCNAASILLFLHRVAD-VFKHY 97 (428)
Q Consensus 61 v~~~~~~ly~v~~~~~~~n~~~~~~~L~~~~~-~l~~~ 97 (428)
+|..-.++-||++++..++.+ =++|+++.+ +.-+|
T Consensus 79 ~~eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~y 114 (159)
T 3cue_C 79 TYCTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKY 114 (159)
T ss_dssp EECCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHH
Confidence 666677999999998765433 245666654 54444
No 23
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=82.00 E-value=12 Score=32.96 Aligned_cols=93 Identities=11% Similarity=0.186 Sum_probs=60.6
Q ss_pred eEEEEEEcCCCC-E-EEEEccC-C---CCChhHHHHHH---H-HHhcccCCCCCCCCEEEeCCEEEE-EEEeCcEEEEEE
Q 014251 5 ASALFLLDIKGR-V-LIWRDYR-G---DVSAIQAERFF---T-KFIEKEGDPQSQNPVVFDNGVTYM-FIQHNNVYLMAA 73 (428)
Q Consensus 5 i~~i~Il~~~G~-~-l~~r~y~-~---~~~~~~~~~f~---~-~i~~~~~~~~~~~pii~~~~~~~v-~~~~~~ly~v~~ 73 (428)
|.++.|+...|+ + ++...|. + ...|+...+|. . .+..+... ..---++.++..|. |...+++.++|+
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 667788866555 2 3344443 1 23355554433 3 44444321 11124567777776 788899999999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHh
Q 014251 74 SRQNCNAASILLFLHRVADVFKHYFE 99 (428)
Q Consensus 74 ~~~~~n~~~~~~~L~~~~~~l~~~~~ 99 (428)
++.+-+--.++.||+.+.+-+..-++
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998887776665
No 24
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=30.87 E-value=37 Score=30.23 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=18.6
Q ss_pred eEEEEEEcCCCCEEEEEccC
Q 014251 5 ASALFLLDIKGRVLIWRDYR 24 (428)
Q Consensus 5 i~~i~Il~~~G~~l~~r~y~ 24 (428)
|.++||+|+.|..++.+.|.
T Consensus 3 iy~~yi~~~~~~liy~~~~~ 22 (219)
T 2j3t_D 3 IFSVYVVNKAGGLIYQLDSY 22 (219)
T ss_dssp EEEEEEECTTSCEEEEEECC
T ss_pred EEEEEEEecCCceEEecccC
Confidence 99999999999999998776
Done!