Query 014252
Match_columns 428
No_of_seqs 106 out of 124
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:14:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qph_A TRMB, A global transcri 84.4 0.96 3.3E-05 44.9 5.0 70 342-420 23-94 (342)
2 3r0a_A Putative transcriptiona 82.2 3.8 0.00013 34.3 7.2 75 342-425 31-115 (123)
3 1qbj_A Protein (double-strande 81.6 3.8 0.00013 32.6 6.6 63 334-407 9-76 (81)
4 1xmk_A Double-stranded RNA-spe 73.7 6 0.00021 31.5 5.6 56 332-397 8-63 (79)
5 3tqn_A Transcriptional regulat 64.5 5.4 0.00019 32.8 3.7 40 364-404 38-77 (113)
6 1sd4_A Penicillinase repressor 63.5 17 0.00058 29.4 6.5 49 344-397 17-65 (126)
7 3neu_A LIN1836 protein; struct 62.3 24 0.00083 29.4 7.5 42 363-405 41-82 (125)
8 1qgp_A Protein (double strande 60.0 17 0.00058 28.2 5.6 56 338-404 17-77 (77)
9 1sfx_A Conserved hypothetical 59.1 57 0.002 24.8 8.8 71 345-424 28-104 (109)
10 2b0l_A GTP-sensing transcripti 49.9 23 0.00078 28.9 5.0 62 337-410 30-97 (102)
11 3by6_A Predicted transcription 43.0 72 0.0024 26.6 7.3 39 363-402 39-77 (126)
12 2dql_A PEX protein; circadian 42.4 88 0.003 25.7 7.6 81 338-420 21-112 (115)
13 1y0u_A Arsenical resistance op 40.0 39 0.0013 26.3 4.9 50 349-408 41-90 (96)
14 2ek5_A Predicted transcription 39.6 32 0.0011 29.0 4.5 42 362-404 31-72 (129)
15 1tbx_A ORF F-93, hypothetical 39.5 43 0.0015 25.9 5.0 57 345-406 16-72 (99)
16 2qww_A Transcriptional regulat 38.2 1.4E+02 0.0049 24.2 8.4 39 345-392 49-87 (154)
17 3sxy_A Transcriptional regulat 35.9 35 0.0012 30.6 4.4 42 362-404 38-79 (218)
18 2oqg_A Possible transcriptiona 35.3 57 0.002 25.6 5.2 72 337-420 23-102 (114)
19 3ihu_A Transcriptional regulat 34.9 42 0.0014 30.2 4.8 41 362-403 42-82 (222)
20 1lj9_A Transcriptional regulat 34.6 1.8E+02 0.006 23.3 9.6 41 345-394 37-77 (144)
21 4ham_A LMO2241 protein; struct 34.5 1.3E+02 0.0044 25.0 7.6 30 365-395 44-73 (134)
22 3pqk_A Biofilm growth-associat 34.0 95 0.0032 24.1 6.3 41 348-397 33-73 (102)
23 2rkh_A Putative APHA-like tran 33.2 39 0.0013 30.6 4.2 53 341-394 14-68 (180)
24 2a61_A Transcriptional regulat 33.1 1.5E+02 0.0051 23.7 7.6 41 345-394 41-81 (145)
25 1okr_A MECI, methicillin resis 32.8 59 0.002 25.9 5.0 64 344-413 17-82 (123)
26 1p6r_A Penicillinase repressor 32.3 37 0.0013 25.6 3.4 48 344-397 16-64 (82)
27 2qvo_A Uncharacterized protein 31.3 61 0.0021 25.2 4.6 60 352-420 31-90 (95)
28 1q1h_A TFE, transcription fact 30.9 24 0.00084 28.1 2.3 66 346-420 27-101 (110)
29 3bpv_A Transcriptional regulat 30.5 2E+02 0.0069 22.7 9.6 41 345-394 37-77 (138)
30 2hs5_A Putative transcriptiona 30.3 48 0.0016 30.4 4.5 42 362-404 54-95 (239)
31 1hw1_A FADR, fatty acid metabo 29.7 42 0.0014 30.2 3.9 40 362-402 34-73 (239)
32 2esh_A Conserved hypothetical 29.6 2.2E+02 0.0076 23.0 8.2 71 348-420 23-103 (118)
33 1jgs_A Multiple antibiotic res 28.9 2.2E+02 0.0074 22.6 10.2 41 345-394 42-82 (138)
34 3f8b_A Transcriptional regulat 28.1 2.4E+02 0.0083 22.9 8.1 84 335-420 7-102 (116)
35 1ub9_A Hypothetical protein PH 27.0 1.1E+02 0.0037 23.1 5.4 67 346-421 25-98 (100)
36 2v7f_A RPS19, RPS19E SSU ribos 26.9 98 0.0033 27.2 5.6 43 376-420 97-139 (150)
37 1xma_A Predicted transcription 26.7 1.7E+02 0.0057 25.1 7.1 74 348-422 51-133 (145)
38 3c7j_A Transcriptional regulat 26.6 64 0.0022 29.6 4.6 42 362-404 52-93 (237)
39 3ech_A MEXR, multidrug resista 26.1 2.1E+02 0.0072 23.0 7.3 41 345-394 45-85 (142)
40 2nyx_A Probable transcriptiona 26.0 2.9E+02 0.0098 23.1 10.0 40 346-394 54-93 (168)
41 3ic7_A Putative transcriptiona 24.5 98 0.0034 25.7 5.0 39 365-404 41-79 (126)
42 3bj6_A Transcriptional regulat 24.1 2.8E+02 0.0096 22.3 10.2 41 345-394 48-88 (152)
43 1ztd_A Hypothetical protein PF 23.4 51 0.0017 28.3 2.9 23 332-356 68-90 (133)
44 2di3_A Bacterial regulatory pr 23.2 54 0.0019 29.7 3.4 40 364-404 33-76 (239)
45 3bwg_A Uncharacterized HTH-typ 22.5 73 0.0025 29.3 4.1 41 362-403 32-72 (239)
46 3g3z_A NMB1585, transcriptiona 22.3 3E+02 0.01 22.0 8.8 40 346-394 40-79 (145)
47 3k2z_A LEXA repressor; winged 21.8 1.3E+02 0.0043 26.6 5.5 53 332-395 6-59 (196)
48 3bdd_A Regulatory protein MARR 21.7 3E+02 0.01 21.7 9.3 68 345-421 39-114 (142)
49 2bv6_A MGRA, HTH-type transcri 21.5 93 0.0032 25.0 4.2 51 345-404 45-98 (142)
50 2hc5_A ORF 99, hypothetical pr 21.5 1.1E+02 0.0039 25.8 4.8 65 351-416 34-100 (117)
51 2fa5_A Transcriptional regulat 21.5 3.3E+02 0.011 22.1 9.9 41 345-394 57-97 (162)
52 3edp_A LIN2111 protein; APC883 21.3 99 0.0034 28.4 4.8 41 362-403 36-76 (236)
53 1on2_A Transcriptional regulat 20.9 80 0.0027 25.9 3.7 48 347-403 18-65 (142)
54 2jt1_A PEFI protein; solution 20.3 77 0.0026 24.7 3.2 39 350-397 23-61 (77)
55 3bro_A Transcriptional regulat 20.3 1.1E+02 0.0038 24.4 4.4 52 345-405 42-98 (141)
No 1
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=84.36 E-value=0.96 Score=44.92 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=51.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC--CceEEechhhHHHHHhhhHHHHHH
Q 014252 342 SFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI--GRYYCVGLKRSNEIIGTTTEEMVL 419 (428)
Q Consensus 342 AY~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~--g~~~avpL~~A~~~l~~~w~~~~~ 419 (428)
+|..|++.|++|..+|. +..|+.-. .|-++|+.|++.|+|....+ ..|.++|++++++.+.++|++.+.
T Consensus 23 vY~~Ll~~g~~t~~eia--------~~~gv~~~-~Vy~~L~~L~~~GlV~~~~g~p~~y~av~p~~~l~~l~~~~~~~~~ 93 (342)
T 3qph_A 23 TYWTLLVYGPSTAKEIS--------TKSGIPYN-RVYDTISSLKLRGFVTEIEGTPKVYAAYSPRIAFFRFKKELEDIMK 93 (342)
T ss_dssp CSHHHHHHHHHHHSCCS--------SSTTSSSC-SCCHHHHHHHHHTSEEEECCTTCEEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHH--------HHHCcCHH-HHHHHHHHHHHCCCEEEEcCceeEEEEcCHHHHHHHHHHHHHHHHH
Confidence 45566666666655543 23343322 57799999999999987643 579999999999999999998875
Q ss_pred H
Q 014252 420 K 420 (428)
Q Consensus 420 ~ 420 (428)
.
T Consensus 94 ~ 94 (342)
T 3qph_A 94 K 94 (342)
T ss_dssp H
T ss_pred H
Confidence 5
No 2
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=82.20 E-value=3.8 Score=34.28 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=55.3
Q ss_pred HHHHHhhcC-C-CCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC-----CC---ceEEechhhHHHHHh
Q 014252 342 SFFILMEQG-K-ATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT-----IG---RYYCVGLKRSNEIIG 411 (428)
Q Consensus 342 AY~~Ll~~g-~-lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~-----~g---~~~avpL~~A~~~l~ 411 (428)
.|..|+..+ + +|..+|.+++. .+- =.|.++|++|++.|+|.+.. .| .|.++|.++..+.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~--------~s~-sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~ 101 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLK--------LDV-STVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQ 101 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHT--------SCH-HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHC--------cCH-HHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHH
Confidence 344556554 4 89999976653 221 25889999999999998853 23 367889999999999
Q ss_pred hhHHHHHHHHhcCC
Q 014252 412 TTTEEMVLKAQQGI 425 (428)
Q Consensus 412 ~~w~~~~~~~~~~~ 425 (428)
+.+++...+..+.-
T Consensus 102 ~~~~~~~~~~~~~l 115 (123)
T 3r0a_A 102 KIVQSWADRLGQEL 115 (123)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99888887766543
No 3
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=81.56 E-value=3.8 Score=32.62 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC--CCceEEechhhHH
Q 014252 334 QEVKEVIISFFILMEQG---KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT--IGRYYCVGLKRSN 407 (428)
Q Consensus 334 Qe~KEaiLAY~~Ll~~g---~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~--~g~~~avpL~~A~ 407 (428)
++..+.||. +|...| ++|..+|.. ++|+.-. .|..+|.+|++.|+|.+.. .|.|.+.|+.++.
T Consensus 9 ~~~~~~IL~--~L~~~~pg~~~t~~eLA~--------~Lgvsr~-tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 9 QDQEQRILK--FLEELGEGKATTAHDLSG--------KLGTPKK-EINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHH--HHHHHCTTCCBCHHHHHH--------HHTCCHH-HHHHHHHHHHHTTSEEEESSSSCEEEEC------
T ss_pred hHHHHHHHH--HHHHcCCCCCcCHHHHHH--------HHCcCHH-HHHHHHHHHHHCCCEEecCCCCCeeEEeCcHHhc
Confidence 344555663 455666 589888754 5666654 7999999999999997643 2789999988754
No 4
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=73.69 E-value=6 Score=31.50 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 014252 332 IQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 397 (428)
Q Consensus 332 eeQe~KEaiLAY~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~ 397 (428)
...+.+|.||.| |.++|+.|..+|.+. +|..-.=.|...|.+|++.|+|.+...|+
T Consensus 8 ~~~~~~~~IL~~--Lk~~g~~ta~eiA~~--------Lgit~~~aVr~hL~~Le~eGlV~~~~~gR 63 (79)
T 1xmk_A 8 DMAEIKEKICDY--LFNVSDSSALNLAKN--------IGLTKARDINAVLIDMERQGDVYRQGTTP 63 (79)
T ss_dssp HHHHHHHHHHHH--HHHTCCEEHHHHHHH--------HCGGGHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred cchhHHHHHHHH--HHHcCCcCHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCEEecCCCC
Confidence 446889999955 888999998887654 45554337889999999999998665565
No 5
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=64.54 E-value=5.4 Score=32.84 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=31.3
Q ss_pred HHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014252 364 LIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 404 (428)
Q Consensus 364 ~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 404 (428)
-|.++||++ .-.|.+|+..|++.|+|...++..+.+.+.+
T Consensus 38 ~La~~~~vS-r~tvr~al~~L~~~Gli~~~~~~G~~V~~~~ 77 (113)
T 3tqn_A 38 KISTEYQIN-PLTVSKAYQSLLDDNVIEKRRGLGMLVKAGA 77 (113)
T ss_dssp HHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECTTH
T ss_pred HHHHHHCcC-HHHHHHHHHHHHHCCCEEEecCCeEEEeCCc
Confidence 345678987 5689999999999999988776666666654
No 6
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=63.47 E-value=17 Score=29.39 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=35.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 014252 344 FILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 397 (428)
Q Consensus 344 ~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~ 397 (428)
.+|+.+|++|..+|.+.+.. + .|.+ .=.|...|++|++-|+|.+..+|+
T Consensus 17 ~~L~~~~~~t~~el~~~l~~---~-~~~~-~~Tvt~~l~rLe~kGlv~R~~~~r 65 (126)
T 1sd4_A 17 NIIWDKKSVSANEIVVEIQK---Y-KEVS-DKTIRTLITRLYKKEIIKRYKSEN 65 (126)
T ss_dssp HHHHHSSSEEHHHHHHHHHT---T-SCCC-HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHhcCCCCHHHHHHHHhh---c-CCCC-hhhHHHHHHHHHHCCceEEEeCCC
Confidence 46778889999999777642 0 0111 124789999999999999877665
No 7
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=62.33 E-value=24 Score=29.38 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhh
Q 014252 363 ELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKR 405 (428)
Q Consensus 363 ~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~~ 405 (428)
+-|.++||+. .-.|.+|+..|++.|+|...++..+.+.+...
T Consensus 41 ~~La~~~~vS-r~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~~ 82 (125)
T 3neu_A 41 REMGVKLAVN-PNTVSRAYQELERAGYIYAKRGMGSFVTSDKA 82 (125)
T ss_dssp HHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECCCHH
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHHCCeEEEecCCEEEEecCch
Confidence 3355678987 47899999999999999887765566666443
No 8
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=59.95 E-value=17 Score=28.20 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC--CceEEechh
Q 014252 338 EVIISFFILMEQG---KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI--GRYYCVGLK 404 (428)
Q Consensus 338 EaiLAY~~Ll~~g---~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~--g~~~avpL~ 404 (428)
+.|| .+|...| ++|..+|.+ ++|++-. .|...|.+|++.|+|.+... |.|.+.|.+
T Consensus 17 ~~IL--~~L~~~~~~~~~t~~eLA~--------~Lgvs~~-tV~~~L~~L~~~G~I~~~g~~~~~W~i~~~~ 77 (77)
T 1qgp_A 17 QRIL--KFLEELGEGKATTAHDLSG--------KLGTPKK-EINRVLYSLAKKGKLQKEAGTPPLWKIAVSD 77 (77)
T ss_dssp HHHH--HHHHHHCSSSCEEHHHHHH--------HHCCCHH-HHHHHHHHHHHHTSEEEECSSSCEEEECCCC
T ss_pred HHHH--HHHHHcCCCCCcCHHHHHH--------HHCcCHH-HHHHHHHHHHHCCCEEecCCCCCceEecCCC
Confidence 3455 4566667 689988765 4566654 79999999999999977432 688888764
No 9
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=59.05 E-value=57 Score=24.83 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=49.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC--Cc----eEEechhhHHHHHhhhHHHHH
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI--GR----YYCVGLKRSNEIIGTTTEEMV 418 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~--g~----~~avpL~~A~~~l~~~w~~~~ 418 (428)
.|...|++|..+|.+.+ |++- =.|...+.+|++.|+|.+... ++ +......+..+.+...+++++
T Consensus 28 ~l~~~~~~s~~ela~~l--------~is~-~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~~~~~~~~ 98 (109)
T 1sfx_A 28 LLLERGGMRVSEIAREL--------DLSA-RFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSSILGEI 98 (109)
T ss_dssp HHHHHCCBCHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHHHHHHHHHH
Confidence 44556889988886654 4432 258899999999999988542 33 234455677777888888888
Q ss_pred HHHhcC
Q 014252 419 LKAQQG 424 (428)
Q Consensus 419 ~~~~~~ 424 (428)
....+.
T Consensus 99 ~~~~~~ 104 (109)
T 1sfx_A 99 ERIEKM 104 (109)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 776554
No 10
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=49.93 E-value=23 Score=28.86 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhcCC-C-CHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCC--ceEEec--hhhHHHHH
Q 014252 337 KEVIISFFILMEQGK-A-TRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIG--RYYCVG--LKRSNEII 410 (428)
Q Consensus 337 KEaiLAY~~Ll~~g~-l-T~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g--~~~avp--L~~A~~~l 410 (428)
++.|+ . .+..|. + |..+ |.++||+. .-.|.+|+..|++.|+|...++| .+.+.+ .+++.++.
T Consensus 30 ~~~I~--~-~l~~g~~lps~~e--------La~~lgVS-r~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 30 IEHIF--E-ELDGNEGLLVASK--------IADRVGIT-RSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp HHHHT--T-SSBTTEEEECHHH--------HHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred HHHHH--h-hhcCCCcCCCHHH--------HHHHHCcC-HHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 55665 2 233443 4 6655 45678874 56899999999999999887733 344433 44444443
No 11
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=43.00 E-value=72 Score=26.58 Aligned_cols=39 Identities=13% Similarity=0.000 Sum_probs=30.1
Q ss_pred HHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEec
Q 014252 363 ELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVG 402 (428)
Q Consensus 363 ~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avp 402 (428)
+-|.++||++ .-.|.+|+..|++.|+|...++..+.+.+
T Consensus 39 ~~La~~~~vS-r~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (126)
T 3by6_A 39 RETALQEKIN-PNTVAKAYKELEAQKVIRTIPGKGTFITG 77 (126)
T ss_dssp HHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECS
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHHCCCEEEecCCeEEEcc
Confidence 3345678875 56899999999999999887765566655
No 12
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=42.38 E-value=88 Score=25.68 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=51.5
Q ss_pred HHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC-----CCc----eEEechh-hH
Q 014252 338 EVIISFFI-LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT-----IGR----YYCVGLK-RS 406 (428)
Q Consensus 338 EaiLAY~~-Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~-----~g~----~~avpL~-~A 406 (428)
|.-+++.. ++..++.+.-+|.+.+++.. ..++.+ .=.+-.+|.+|++.|+|+... +|. |..++.- ++
T Consensus 21 ~l~~~~IL~lL~~~~~~Gyei~~~l~~~~-~~~~is-~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~ 98 (115)
T 2dql_A 21 EVAICYILYVLLQGESYGTELIQQLETEH-PTYRLS-DTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQ 98 (115)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHHHHC-TTEECC-HHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHH
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHc-CCCCCC-cchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHH
Confidence 44444333 44568899999988888652 212111 123567899999999998641 232 6666654 45
Q ss_pred HHHHhhhHHHHHHH
Q 014252 407 NEIIGTTTEEMVLK 420 (428)
Q Consensus 407 ~~~l~~~w~~~~~~ 420 (428)
.+..-+.|++++..
T Consensus 99 l~~~~~~~~~~~~~ 112 (115)
T 2dql_A 99 AEDLARLWQNYIYV 112 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66677889888753
No 13
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=40.02 E-value=39 Score=26.28 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=35.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhHHH
Q 014252 349 QGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNE 408 (428)
Q Consensus 349 ~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~~A~~ 408 (428)
.|++|..+|.++ +|+.-. .|...|..|++.|+|.+.. |.|...|..++.+
T Consensus 41 ~~~~~~~eLa~~--------l~is~~-tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~~~~ 90 (96)
T 1y0u_A 41 DKGRSEEEIMQT--------LSLSKK-QLDYHLKVLEAGFCIERVG-ERWVVTDAGKIVD 90 (96)
T ss_dssp HTTCCHHHHHHH--------HTCCHH-HHHHHHHHHHHTTSEEEET-TEEEECTTTCCC-
T ss_pred cCCCCHHHHHHH--------HCcCHH-HHHHHHHHHHHCCCEEEEC-CEEEECCCchHHH
Confidence 577888886543 454432 4889999999999999887 8777777554433
No 14
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=39.55 E-value=32 Score=29.05 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=32.4
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014252 362 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 404 (428)
Q Consensus 362 E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 404 (428)
|+-|.++||++ .-.|.+|+..|+..|+|...++..+.+.+..
T Consensus 31 e~~La~~~gvS-r~tVr~Al~~L~~~Gli~~~~g~G~~V~~~~ 72 (129)
T 2ek5_A 31 TNELAAFHRIN-PATARNGLTLLVEAGILYKKRGIGMFVSAQA 72 (129)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHHHTTTSEEEETTTEEEECTTH
T ss_pred HHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEecCCEEEEecCc
Confidence 34456778985 5689999999999999988776566666654
No 15
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=39.50 E-value=43 Score=25.93 Aligned_cols=57 Identities=21% Similarity=0.105 Sum_probs=36.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhH
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRS 406 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~~A 406 (428)
.|...|+.|..+|.+.+ .+.+|.+- =.+...+++|++.|+|.+..+++-..+-+.++
T Consensus 16 ~l~~~~~~~~~el~~~l----a~~l~is~-~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~ 72 (99)
T 1tbx_A 16 YLYDNEGIATYDLYKKV----NAEFPMST-ATFYDAKKFLIQEGFVKERQERGEKRLYLTEK 72 (99)
T ss_dssp HHTTCTTCBHHHHHHHH----HTTSCCCH-HHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred HHHHcCCcCHHHHHHHH----HHHcCCCH-HHHHHHHHHHHHCCCEEEEecCCceEEEECHH
Confidence 34556778888874433 23344432 24788999999999998876555444444433
No 16
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=38.22 E-value=1.4e+02 Score=24.22 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeee
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVAR 392 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~ 392 (428)
.|...|++|..+|.+.. |.+-. .|...+.+|++.|+|.+
T Consensus 49 ~l~~~~~~t~~eLa~~l--------~~~~~-tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 49 VIYSTPGISVADLTKRL--------IITGS-SAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCHH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHCCCCCHHHHHHHH--------CCCHH-HHHHHHHHHHHCCCEEe
Confidence 34556778988886655 33222 68899999999999998
No 17
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=35.92 E-value=35 Score=30.60 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=32.7
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014252 362 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 404 (428)
Q Consensus 362 E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 404 (428)
|+-|.++||++-. .|-+||..|+..|||+..++..+.+.+++
T Consensus 38 e~~La~~lgVSRt-pVREAL~~L~~eGlv~~~~~~G~~V~~~~ 79 (218)
T 3sxy_A 38 VRELSEKLGISFT-PVRDALLQLATEGLVKVVPRVGFFVTDVD 79 (218)
T ss_dssp HHHHHHHHTCCHH-HHHHHHHHHHHHTSEEEETTTEEEECCCC
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEeCCCceEEcCCC
Confidence 4456678898854 89999999999999988877666666543
No 18
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=35.29 E-value=57 Score=25.63 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc---eEEechh-----hHHH
Q 014252 337 KEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR---YYCVGLK-----RSNE 408 (428)
Q Consensus 337 KEaiLAY~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~---~~avpL~-----~A~~ 408 (428)
+..||.+ | ..|+.|..+|.+. +|..-. .|...|.+|++.|+|.+...|+ |...|-. ++..
T Consensus 23 r~~IL~~--L-~~~~~~~~ela~~--------l~is~~-tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~ 90 (114)
T 2oqg_A 23 RWEILTE--L-GRADQSASSLATR--------LPVSRQ-AIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLE 90 (114)
T ss_dssp HHHHHHH--H-HHSCBCHHHHHHH--------SSSCHH-HHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred HHHHHHH--H-HcCCCCHHHHHHH--------HCcCHH-HHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHH
Confidence 3445553 3 5688898887554 344322 4788999999999998866666 4444322 2233
Q ss_pred HHhhhHHHHHHH
Q 014252 409 IIGTTTEEMVLK 420 (428)
Q Consensus 409 ~l~~~w~~~~~~ 420 (428)
.+...|++.+..
T Consensus 91 ~~~~~~~~~l~~ 102 (114)
T 2oqg_A 91 RIGAEWDRRLAA 102 (114)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344556666554
No 19
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=34.93 E-value=42 Score=30.16 Aligned_cols=41 Identities=27% Similarity=0.282 Sum_probs=31.5
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 014252 362 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 403 (428)
Q Consensus 362 E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL 403 (428)
|+-|.++||++-. .|-+||..|+..|||+..++..+.+.++
T Consensus 42 E~~La~~lgVSRt-pVREAl~~L~~eGlv~~~~~~G~~V~~~ 82 (222)
T 3ihu_A 42 ETDLVAHFGVGRN-SVREALQRLAAEGIVDLQRHRGAVIRRL 82 (222)
T ss_dssp HHHHHHHHTCCHH-HHHHHHHHHHHTTSEEECSTTCEEECCC
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEecCCCeEEecC
Confidence 4445677888754 8999999999999998877765655554
No 20
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=34.57 E-value=1.8e+02 Score=23.30 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=29.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 394 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 394 (428)
.|...|++|..+|.+.. |.+- =.|..++.+|++.|+|.+..
T Consensus 37 ~l~~~~~~t~~~la~~l--------~~s~-~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 37 RVCENPGIIQEKIAELI--------KVDR-TTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHCcCcCHHHHHHHH--------CCCH-hHHHHHHHHHHHCCCEEeec
Confidence 34556778888886654 3332 26889999999999998864
No 21
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=34.49 E-value=1.3e+02 Score=24.98 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=25.0
Q ss_pred HHHHhCCcceecHHHHHHHHHHcCeeeecCC
Q 014252 365 IKEEFGESCNFDVDDAVHKLEKLGIVARDTI 395 (428)
Q Consensus 365 L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~ 395 (428)
|.++||++- -.|.+|+..|+..|+|...++
T Consensus 44 La~~~gVSr-~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 44 FASRIGVNP-NTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp HHHHHTCCH-HHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHCCCH-HHHHHHHHHHHHCCcEEEEcC
Confidence 567788875 489999999999999987665
No 22
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=34.00 E-value=95 Score=24.14 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=30.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 014252 348 EQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 397 (428)
Q Consensus 348 ~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~ 397 (428)
..|+.|..+|.+. +|..-. .+...|.+|++.|||.+...|+
T Consensus 33 ~~~~~~~~ela~~--------l~is~~-tvs~~L~~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 33 VEGEFSVGELEQQ--------IGIGQP-TLSQQLGVLRESGIVETRRNIK 73 (102)
T ss_dssp HTCCBCHHHHHHH--------HTCCTT-HHHHHHHHHHHTTSEEEECSSS
T ss_pred HhCCCCHHHHHHH--------HCcCHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence 3588888886543 454443 6889999999999998876664
No 23
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=33.15 E-value=39 Score=30.58 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=40.2
Q ss_pred HHHHH--HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014252 341 ISFFI--LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 394 (428)
Q Consensus 341 LAY~~--Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 394 (428)
++|++ |+..+|.|+=|+...|++|.+..+|- +-.=..-++++|++-|+|+...
T Consensus 14 ~~l~VLGlL~e~p~h~Yei~~~i~~~~~~s~gS-iY~~~~~~l~~Le~~GlI~~~~ 68 (180)
T 2rkh_A 14 VRLCALGTIASQPMRYSELAGSVRHFTSRIMGP-SLELMGISIELLRYEGLVEAVD 68 (180)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHHHHHHHHHSC-CGGGTTCCTHHHHHTTSEECCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhccCCCC-CchhHHHHHHHHHHCCCeeeee
Confidence 45554 55789999999999999999998883 3222222999999999995443
No 24
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=33.05 E-value=1.5e+02 Score=23.73 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 394 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 394 (428)
.|...|++|..+|.+.. |.+-. .+...+.+|++.|+|.+..
T Consensus 41 ~l~~~~~~~~~~la~~l--------~~s~~-tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 41 KIYFEGPKRPGELSVLL--------GVAKS-TVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHCCBCHHHHHHHH--------TCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHcCCCCHHHHHHHH--------CCCch-hHHHHHHHHHHCCCeeecC
Confidence 34456788998887543 33322 6889999999999998864
No 25
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=32.82 E-value=59 Score=25.91 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhCCcce-ecHHHHHHHHHHcCeeeecCCCc-eEEechhhHHHHHhhh
Q 014252 344 FILMEQGKATRQDLDLRCEELIKEEFGESCN-FDVDDAVHKLEKLGIVARDTIGR-YYCVGLKRSNEIIGTT 413 (428)
Q Consensus 344 ~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vd-Fdv~dAL~kL~rLgLv~~d~~g~-~~avpL~~A~~~l~~~ 413 (428)
.+|+..|++|..+|.+.+.. + ..+. =.|...|++|++.|+|.+..+|+ +..+++-+.-+.+-..
T Consensus 17 ~~l~~~~~~t~~ela~~l~~---~---~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~ 82 (123)
T 1okr_A 17 NIIWMKKYASANNIIEEIQM---Q---KDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKT 82 (123)
T ss_dssp HHHHHHSSEEHHHHHHHHHH---H---CCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHHHhc---c---CCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHH
Confidence 34566788999999777642 1 1111 24788999999999999876554 4446665544443333
No 26
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=32.26 E-value=37 Score=25.62 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=35.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhCCccee-cHHHHHHHHHHcCeeeecCCCc
Q 014252 344 FILMEQGKATRQDLDLRCEELIKEEFGESCNF-DVDDAVHKLEKLGIVARDTIGR 397 (428)
Q Consensus 344 ~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdF-dv~dAL~kL~rLgLv~~d~~g~ 397 (428)
.+|+..|++|..+|.+.+.. + ..++- .|...|++|++.|+|.+...|+
T Consensus 16 ~~L~~~~~~t~~ei~~~l~~---~---~~~s~~Tv~~~l~rL~~kGlv~r~~~gr 64 (82)
T 1p6r_A 16 KVIWKHSSINTNEVIKELSK---T---STWSPKTIQTMLLRLIKKGALNHHKEGR 64 (82)
T ss_dssp HHHHTSSSEEHHHHHHHHHH---H---SCCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHcCCCCCHHHHHHHHhh---c---CCccHHHHHHHHHHHHHCCCeEEEecCC
Confidence 35667788999999877653 1 12222 4889999999999999877654
No 27
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=31.30 E-value=61 Score=25.16 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhHHHHHhhhHHHHHHH
Q 014252 352 ATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNEIIGTTTEEMVLK 420 (428)
Q Consensus 352 lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~~A~~~l~~~w~~~~~~ 420 (428)
+|..+|.+.. |.+- =.+...+.+|++.|+|....+++...+-|-+.-..+-+.+.+.+..
T Consensus 31 ~t~~eLa~~l--------~i~~-~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~~~~~ 90 (95)
T 2qvo_A 31 VYIQYIASKV--------NSPH-SYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKSIIDI 90 (95)
T ss_dssp EEHHHHHHHS--------SSCH-HHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHH--------CcCH-HHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHHHHHH
Confidence 7888776543 3332 3578899999999999444457766666665555555555554433
No 28
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=30.86 E-value=24 Score=28.09 Aligned_cols=66 Identities=23% Similarity=0.381 Sum_probs=36.2
Q ss_pred HhhcC-CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeec----CC-CceE---EechhhHHHHHhhhHHH
Q 014252 346 LMEQG-KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARD----TI-GRYY---CVGLKRSNEIIGTTTEE 416 (428)
Q Consensus 346 Ll~~g-~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d----~~-g~~~---avpL~~A~~~l~~~w~~ 416 (428)
|..+| ++|..+| .+++|++-. .|.+||.+|++.|+|... +. |.+. .+..++..+++..+=+.
T Consensus 27 l~~~g~~~s~~eL--------a~~lgvs~~-tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~~~~~~~~~~ 97 (110)
T 1q1h_A 27 LLDKGTEMTDEEI--------ANQLNIKVN-DVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQINEILLNRKRL 97 (110)
T ss_dssp HHHHCSCBCHHHH--------HHTTTSCHH-HHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC---------
T ss_pred HHHcCCCCCHHHH--------HHHHCcCHH-HHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHHHHHHHHHHHH
Confidence 44566 5776664 467787654 799999999999999887 44 4332 45666666666665444
Q ss_pred HHHH
Q 014252 417 MVLK 420 (428)
Q Consensus 417 ~~~~ 420 (428)
++++
T Consensus 98 ~~e~ 101 (110)
T 1q1h_A 98 ILDK 101 (110)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
No 29
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=30.50 E-value=2e+02 Score=22.70 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=30.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 394 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 394 (428)
.|...|++|..+|.+.+ |.+- =.|..++.+|++.|+|.+..
T Consensus 37 ~l~~~~~~~~~ela~~l--------~~s~-~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 37 RIHREPGIKQDELATFF--------HVDK-GTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHSTTCBHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHcCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCEEeec
Confidence 34556789998887654 3332 26889999999999998853
No 30
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=30.28 E-value=48 Score=30.40 Aligned_cols=42 Identities=19% Similarity=0.039 Sum_probs=32.9
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014252 362 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 404 (428)
Q Consensus 362 E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 404 (428)
|+-|.++||+.- -.|-+||..|+..|||+..++..+.+.++.
T Consensus 54 e~~La~~lgVSR-tpVREAL~~L~~eGlv~~~~~~G~~V~~~~ 95 (239)
T 2hs5_A 54 EPDICAALDVSR-NTVREAFQILIEDRLVAHELNRGVFVRVPT 95 (239)
T ss_dssp HHHHHHHHTCCH-HHHHHHHHHHHHTTSEEEETTTEEEECCCC
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHCCCEEEeCCCeeEEeCCC
Confidence 445667889874 489999999999999998887666666654
No 31
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=29.67 E-value=42 Score=30.22 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=30.2
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEec
Q 014252 362 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVG 402 (428)
Q Consensus 362 E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avp 402 (428)
|+-|.++||++ .-.|-+||..|+..|||...++....+.+
T Consensus 34 E~eLa~~~gVS-R~tVReAL~~L~~eGlv~~~~g~G~~V~~ 73 (239)
T 1hw1_A 34 ERELSELIGVT-RTTLREVLQRLARDGWLTIQHGKPTKVNN 73 (239)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTEEEEECC
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHCCcEEEecCCCcEeeC
Confidence 33455678986 56899999999999999887764445544
No 32
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=29.61 E-value=2.2e+02 Score=22.97 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=44.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhCCccee--cHHHHHHHHHHcCeeeecC---CC----ceEEechhh-HHHHHhhhHHHH
Q 014252 348 EQGKATRQDLDLRCEELIKEEFGESCNF--DVDDAVHKLEKLGIVARDT---IG----RYYCVGLKR-SNEIIGTTTEEM 417 (428)
Q Consensus 348 ~~g~lT~~~Ld~~~E~~L~~~fg~~vdF--dv~dAL~kL~rLgLv~~d~---~g----~~~avpL~~-A~~~l~~~w~~~ 417 (428)
..++.+.-+|...+++ ...++.+++- .+-.+|.+|++.|+|+... +| .|..+|.-+ +.+.....|.++
T Consensus 23 ~~~~~~gyel~~~l~~--~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~~~~~ 100 (118)
T 2esh_A 23 AEKPSHGYELAERLAE--FGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRSLEDM 100 (118)
T ss_dssp HHSCBCHHHHHHHHHT--TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHH--hCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHHHHHH
Confidence 4588999999888876 1111112443 6788999999999998753 23 245555432 344455566665
Q ss_pred HHH
Q 014252 418 VLK 420 (428)
Q Consensus 418 ~~~ 420 (428)
...
T Consensus 101 ~~~ 103 (118)
T 2esh_A 101 KRR 103 (118)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 33
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=28.87 E-value=2.2e+02 Score=22.56 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=29.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 394 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 394 (428)
.|...|+.|..+|.+. +|.+-. .+...+++|++.|+|.+..
T Consensus 42 ~l~~~~~~~~~~la~~--------l~~~~~-tvs~~l~~L~~~gli~r~~ 82 (138)
T 1jgs_A 42 SIRCAACITPVELKKV--------LSVDLG-ALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp HHHHHSSBCHHHHHHH--------HTCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHhcCCCCHHHHHHH--------HCCChH-HHHHHHHHHHHCCCEEecC
Confidence 3455677888887633 343322 6888999999999998853
No 34
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=28.06 E-value=2.4e+02 Score=22.87 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHHhCCccee-cHHHHHHHHHHcCeeeecC----CCc----eEEech
Q 014252 335 EVKEVIISFFIL--MEQGKATRQDLDLRCEELIKEEFGESCNF-DVDDAVHKLEKLGIVARDT----IGR----YYCVGL 403 (428)
Q Consensus 335 e~KEaiLAY~~L--l~~g~lT~~~Ld~~~E~~L~~~fg~~vdF-dv~dAL~kL~rLgLv~~d~----~g~----~~avpL 403 (428)
++.--.+-+.+| +..|+.+.-+|.+++++.....+ .++- .+-.+|.+|++-|+|+... .|. |..+|-
T Consensus 7 ~~~~g~l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~--~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~ 84 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEM--ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEI 84 (116)
T ss_dssp HHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHTTTCC--CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHH
T ss_pred HHHhchHHHHHHHHHHhCCCCHHHHHHHHHHHhCCCC--CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHH
Confidence 444445555553 46789999999999887653322 2222 2678899999999998752 332 444543
Q ss_pred h-hHHHHHhhhHHHHHHH
Q 014252 404 K-RSNEIIGTTTEEMVLK 420 (428)
Q Consensus 404 ~-~A~~~l~~~w~~~~~~ 420 (428)
- ++++...+.|+++...
T Consensus 85 G~~~l~~~~~~~~~~~~~ 102 (116)
T 3f8b_A 85 GHENMRLAFESWSRVDKI 102 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3 3444466678877554
No 35
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=27.05 E-value=1.1e+02 Score=23.10 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=39.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC---CCceEEechh-hH---HHHHhhhHHHHH
Q 014252 346 LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT---IGRYYCVGLK-RS---NEIIGTTTEEMV 418 (428)
Q Consensus 346 Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~---~g~~~avpL~-~A---~~~l~~~w~~~~ 418 (428)
|...|+.|..+|.+.+ |.+-. .+...|.+|++.|+|.+.. +++...+-+. +. ...+-..+.+++
T Consensus 25 L~~~~~~~~~ela~~l--------~is~~-tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~~~~~~~ 95 (100)
T 1ub9_A 25 LLPRRKAPFSQIQKVL--------DLTPG-NLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAVI 95 (100)
T ss_dssp HHHHSEEEHHHHHHHT--------TCCHH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcCHHHHHHHH--------CcCHH-HHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHHHHHHHH
Confidence 3456778888876644 43322 4788999999999998644 4443222222 22 334445566665
Q ss_pred HHH
Q 014252 419 LKA 421 (428)
Q Consensus 419 ~~~ 421 (428)
..+
T Consensus 96 ~~~ 98 (100)
T 1ub9_A 96 DGL 98 (100)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 36
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=26.85 E-value=98 Score=27.15 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHcCeeeecCCCceEEechhhHHHHHhhhHHHHHHH
Q 014252 376 DVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNEIIGTTTEEMVLK 420 (428)
Q Consensus 376 dv~dAL~kL~rLgLv~~d~~g~~~avpL~~A~~~l~~~w~~~~~~ 420 (428)
.|-+||+.|+..|+|...+.+...+.|.. .+.+++--.+++.+
T Consensus 97 tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~--~~~l~~ia~~i~~~ 139 (150)
T 2v7f_A 97 IIRKALQQLEAAGFVEKVPGKGRVITPKG--RSFLDKIATELKKE 139 (150)
T ss_dssp HHHHHHHHHHHTTSEEEETTTEEEECHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEeCCCceEECCCC--HHHHHHHHHHHHHH
Confidence 58899999999999988776455555533 34455555555543
No 37
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=26.71 E-value=1.7e+02 Score=25.06 Aligned_cols=74 Identities=14% Similarity=0.012 Sum_probs=47.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC----CC----ceEEech-hhHHHHHhhhHHHHH
Q 014252 348 EQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT----IG----RYYCVGL-KRSNEIIGTTTEEMV 418 (428)
Q Consensus 348 ~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~----~g----~~~avpL-~~A~~~l~~~w~~~~ 418 (428)
..++++.-+|.+.+++.....+++. .=.+-.+|.+|++.|+|++.. .| .|..+|. .++.+.....|+++.
T Consensus 51 ~~~~~~gyeI~~~l~~~~~~~~~is-~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~~~~~ 129 (145)
T 1xma_A 51 IEGDSYGYEISKNIRIKTDELYVIK-ETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEEWELTK 129 (145)
T ss_dssp HHCCEEHHHHHHHHHHHHTTSCCCC-HHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHhhCCccCcC-hhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 4588999999888877654333322 235678999999999998753 23 2455554 234555666787777
Q ss_pred HHHh
Q 014252 419 LKAQ 422 (428)
Q Consensus 419 ~~~~ 422 (428)
....
T Consensus 130 ~~i~ 133 (145)
T 1xma_A 130 KVIN 133 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 38
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=26.59 E-value=64 Score=29.59 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=32.4
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014252 362 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 404 (428)
Q Consensus 362 E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 404 (428)
|+-|.++||+.- -.|-+||..|+..|||...+++...+.++.
T Consensus 52 e~~La~~lgVSr-~~VReAL~~L~~~Glv~~~~~~G~~V~~~~ 93 (237)
T 3c7j_A 52 QQELATLFGVSR-MPVREALRQLEAQSLLRVETHKGAVVAPLI 93 (237)
T ss_dssp HHHHHHHHTSCH-HHHHHHHHHHHHTTSEEEETTTEEEECCCH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHCCCEEEeCCCceEEecCC
Confidence 334556788875 489999999999999998877666666654
No 39
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=26.07 E-value=2.1e+02 Score=22.96 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=27.9
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 394 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 394 (428)
.|...|++|..+|.+.+ |.+- =.+...+++|++.|+|.+..
T Consensus 45 ~l~~~~~~t~~eLa~~l--------~~~~-~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 45 LIDEQRGLNLQDLGRQM--------CRDK-ALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHTTTCCHHHHHHHH--------C----CHHHHHHHHHHHTTSEEC--
T ss_pred HHHhCCCcCHHHHHHHh--------CCCH-HHHHHHHHHHHHCCCEeecc
Confidence 34456789998886544 3322 25789999999999998864
No 40
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=26.04 E-value=2.9e+02 Score=23.06 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=29.0
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014252 346 LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 394 (428)
Q Consensus 346 Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 394 (428)
|...|++|..+|.+.+ |.+-. .|...+++|++.|+|.+..
T Consensus 54 L~~~~~~t~~eLa~~l--------~is~~-tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 54 LSNHGPINLATLATLL--------GVQPS-ATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp HHHHCSEEHHHHHHHH--------TSCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHcCCCCHHHHHHHh--------CCCHH-HHHHHHHHHHHCCCEEecc
Confidence 4456788888886654 33322 5788999999999998853
No 41
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=24.47 E-value=98 Score=25.67 Aligned_cols=39 Identities=5% Similarity=-0.052 Sum_probs=28.6
Q ss_pred HHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014252 365 IKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 404 (428)
Q Consensus 365 L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 404 (428)
|.++||++ .-.|.+|+..|+..|+|...++..+.+.+..
T Consensus 41 La~~~~vS-r~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~ 79 (126)
T 3ic7_A 41 YASIVEVN-ANTVMRSYEYLQSQEVIYNKRGIGFFVASGA 79 (126)
T ss_dssp TTTCC-CC-SGGGHHHHHHHHTTTSEEEETTTEEEECTTH
T ss_pred HHHHHCcC-HHHHHHHHHHHHHCCcEEEEcCCccEEccCc
Confidence 34567774 3579999999999999988776556665554
No 42
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=24.06 E-value=2.8e+02 Score=22.26 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=29.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 394 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 394 (428)
.|...|++|..+|.+.. |.+- =.+..++.+|++.|+|.+..
T Consensus 48 ~l~~~~~~t~~ela~~l--------~~~~-~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 48 GLSLTPGATAPQLGAAL--------QMKR-QYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhCCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCeeecC
Confidence 34456778888876654 3332 26889999999999999864
No 43
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=23.40 E-value=51 Score=28.27 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHhhcCCCCHHH
Q 014252 332 IQQEVKEVIISFFILMEQGKATRQD 356 (428)
Q Consensus 332 eeQe~KEaiLAY~~Ll~~g~lT~~~ 356 (428)
.--++.||++||+||- |.+|.+|
T Consensus 68 ~kGd~aEA~iAyAWle--G~is~eE 90 (133)
T 1ztd_A 68 AKGDYAEALIAKAWLM--GLISERE 90 (133)
T ss_dssp CHHHHHHHHHHHHHHT--TSSCHHH
T ss_pred CccHHHHHHHHHHHHh--ccccHHH
Confidence 3457889999999995 7777554
No 44
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=23.18 E-value=54 Score=29.73 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=29.8
Q ss_pred HHHHHhCCcceecHHHHHHHHHHcCeeee--cCC--CceEEechh
Q 014252 364 LIKEEFGESCNFDVDDAVHKLEKLGIVAR--DTI--GRYYCVGLK 404 (428)
Q Consensus 364 ~L~~~fg~~vdFdv~dAL~kL~rLgLv~~--d~~--g~~~avpL~ 404 (428)
=|.++||++-. .|-+||..|+..|||+. .++ +...+.++.
T Consensus 33 ~La~~lgVSRt-pVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~ 76 (239)
T 2di3_A 33 ALSETLGVSRS-SLREALRVLEALGTISTATGSGPRSGTIITAAP 76 (239)
T ss_dssp HHHHHHTCCHH-HHHHHHHHHHHHTSEECCSTTSGGGCCEECCCC
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHCCCeEeecccCCCCCceeeCCc
Confidence 34567888754 79999999999999988 766 455555544
No 45
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=22.45 E-value=73 Score=29.26 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=30.2
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 014252 362 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 403 (428)
Q Consensus 362 E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL 403 (428)
|+-|.++||+. .-.|.+|+..|++.|+|.+..+....+.+.
T Consensus 32 e~~La~~~~vS-r~tvr~Al~~L~~~g~i~~~~g~G~~V~~~ 72 (239)
T 3bwg_A 32 LETLMAQFEVS-KSTITKSLELLEQKGAIFQVRGSGIFVRKH 72 (239)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHCCcEEEeCCceEEEecC
Confidence 44456778885 568999999999999998876544444443
No 46
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=22.29 E-value=3e+02 Score=21.99 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=29.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014252 346 LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 394 (428)
Q Consensus 346 Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 394 (428)
|...|++|..+|.+. +|.+-. .+...+.+|++.|+|++..
T Consensus 40 l~~~~~~t~~eLa~~--------l~~~~~-tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 40 LATEGSRTQKHIGEK--------WSLPKQ-TVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHCSBCHHHHHHH--------HTCCHH-HHHHHHHHHHHTTSEEECC
T ss_pred HHHCCCCCHHHHHHH--------HCCCHH-HHHHHHHHHHHCCCEeecc
Confidence 445677899888644 343322 6889999999999999854
No 47
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=21.79 E-value=1.3e+02 Score=26.59 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=37.5
Q ss_pred HhHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC
Q 014252 332 IQQEVKEVIISFFILMEQG-KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI 395 (428)
Q Consensus 332 eeQe~KEaiLAY~~Ll~~g-~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~ 395 (428)
.|+++.|.|+.| +..+| +.|..||. +.+|.+-. .+.+.|+.|++.|++.+++.
T Consensus 6 ~q~~il~~I~~~--~~~~g~~~s~~eia--------~~lgl~~~-tv~~~l~~Le~~G~i~~~~~ 59 (196)
T 3k2z_A 6 RQRKVLLFIEEF--IEKNGYPPSVREIA--------RRFRITPR-GALLHLIALEKKGYIERKNG 59 (196)
T ss_dssp HHHHHHHHHHHH--HHHHSSCCCHHHHH--------HHHTSCHH-HHHHHHHHHHHTTSEECC--
T ss_pred HHHHHHHHHHHH--HHHhCCCCCHHHHH--------HHcCCCcH-HHHHHHHHHHHCCCEEecCC
Confidence 466777777654 33455 57877764 45677755 79999999999999988754
No 48
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=21.66 E-value=3e+02 Score=21.68 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=41.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC---CceEEech-hhHHHHH----hhhHHH
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI---GRYYCVGL-KRSNEII----GTTTEE 416 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~---g~~~avpL-~~A~~~l----~~~w~~ 416 (428)
.|...|++|..+|.+.. |.+- =.|...+++|++.|+|.+... ++...+.+ ++..+.+ ...+++
T Consensus 39 ~l~~~~~~~~~ela~~l--------~is~-~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~ 109 (142)
T 3bdd_A 39 TLLKDAPLHQLALQERL--------QIDR-AAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQA 109 (142)
T ss_dssp HHHHHCSBCHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSCCHHHHH
T ss_pred HHHhCCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHH
Confidence 34456788998886543 4332 258899999999999988653 44333333 3334444 334554
Q ss_pred HHHHH
Q 014252 417 MVLKA 421 (428)
Q Consensus 417 ~~~~~ 421 (428)
+....
T Consensus 110 ~~~~~ 114 (142)
T 3bdd_A 110 IKTSM 114 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 49
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=21.50 E-value=93 Score=25.04 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=34.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC---CceEEechh
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI---GRYYCVGLK 404 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~---g~~~avpL~ 404 (428)
.|...|++|..+|.+.. |.+- =.|..++.+|++.|+|.+..+ ++...+.+.
T Consensus 45 ~l~~~~~~~~~ela~~l--------~~~~-~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT 98 (142)
T 2bv6_A 45 ILWDESPVNVKKVVTEL--------ALDT-GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLT 98 (142)
T ss_dssp HHHHSSEEEHHHHHHHT--------TCCT-TTHHHHHHHHHHTTSEEEEECSSSTTCEEEEEC
T ss_pred HHHHcCCcCHHHHHHHH--------CCCh-hhHHHHHHHHHHCCCEEeecCCCCcceEEEEEC
Confidence 34556778888875544 4332 268999999999999988653 554444443
No 50
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=21.49 E-value=1.1e+02 Score=25.81 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHH--HHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhHHHHHhhhHHH
Q 014252 351 KATRQDLDLRCEELI--KEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNEIIGTTTEE 416 (428)
Q Consensus 351 ~lT~~~Ld~~~E~~L--~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~~A~~~l~~~w~~ 416 (428)
+.+.++|...+|..= .+.++..+.|.+++-... .--.++..+++..+.=+|.+++++++...|+.
T Consensus 34 ~~~~eel~~av~~lN~~~~~~n~~L~F~vdee~~~-~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e~ 100 (117)
T 2hc5_A 34 QVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNE-YYVKVIEDSTNEVIREIPPKRWLDFYAAMTEF 100 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTE-EEEEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCc-EEEEEEECCCCcEEEeCChHHHHHHHHHHHHh
Confidence 378899987777432 234688999999985321 11125555555678999999999999998864
No 51
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=21.47 E-value=3.3e+02 Score=22.14 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=28.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014252 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 394 (428)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 394 (428)
.|...|++|..+|.+.+ |.+- =.|..++++|++.|+|.+..
T Consensus 57 ~l~~~~~~t~~ela~~l--------~is~-~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 57 ILALYPGSSASEVSDRT--------AMDK-VAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHSTTCCHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEC--
T ss_pred HHHhCCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCEeeec
Confidence 34456788988886543 3332 25889999999999998854
No 52
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=21.30 E-value=99 Score=28.36 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 014252 362 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 403 (428)
Q Consensus 362 E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL 403 (428)
|+-|.++||+.- -.|-+|+..|++.|+|.+..+....+.+.
T Consensus 36 e~~La~~~~vSr-~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 76 (236)
T 3edp_A 36 ETALQEIYSSSR-TTIRRAVDLLVEEGLVVRKNGVGLYVQPK 76 (236)
T ss_dssp HHHHHHHTTCCH-HHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHHHHHCcCH-HHHHHHHHHHHHCCCEEEECCceEEEccC
Confidence 455667899864 47999999999999998877644555444
No 53
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=20.92 E-value=80 Score=25.85 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=35.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 014252 347 MEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 403 (428)
Q Consensus 347 l~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL 403 (428)
...|++|..+|.+. +|++ .=.|..++.+|++.|+|.+...+.+...|-
T Consensus 18 ~~~~~~~~~ela~~--------l~vs-~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~ 65 (142)
T 1on2_A 18 EEKGYARVSDIAEA--------LAVH-PSSVTKMVQKLDKDEYLIYEKYRGLVLTSK 65 (142)
T ss_dssp HHHSSCCHHHHHHH--------HTSC-HHHHHHHHHHHHHTTSEEEETTTEEEECHH
T ss_pred hhcCCCCHHHHHHH--------hCCC-HHHHHHHHHHHHHCCCEEEeeCceEEEchh
Confidence 34577888887654 3444 235788999999999999987777776664
No 54
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.33 E-value=77 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 014252 350 GKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 397 (428)
Q Consensus 350 g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~ 397 (428)
++.|.+||. +.||++ .--|..-|..|++-|+|.++.+|+
T Consensus 23 ~~psv~EIa--------~~lgvS-~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 23 APVKTRDIA--------DAAGLS-IYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp SCEEHHHHH--------HHHTCC-HHHHHHHHHHHHHTTSEEEESCSS
T ss_pred CCcCHHHHH--------HHHCCC-HHHHHHHHHHHHHCCcEEecCCCC
Confidence 567777764 457775 566999999999999999987653
No 55
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=20.31 E-value=1.1e+02 Score=24.42 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHhhcC--CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC---CceEEechhh
Q 014252 345 ILMEQG--KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI---GRYYCVGLKR 405 (428)
Q Consensus 345 ~Ll~~g--~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~---g~~~avpL~~ 405 (428)
.|...+ ++|..+|.+.+ |.+- =.|..++++|++.|+|.+..+ ++...+.+.+
T Consensus 42 ~l~~~~~~~~~~~ela~~l--------~~~~-~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~ 98 (141)
T 3bro_A 42 YLSRNKNKEVLQRDLESEF--------SIKS-STATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTK 98 (141)
T ss_dssp HHHHTTTSCCBHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred HHHHCCCCCcCHHHHHHHH--------CCCc-chHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECH
Confidence 344555 68999886543 3332 268899999999999988642 4444444443
Done!