Query 014254
Match_columns 428
No_of_seqs 286 out of 1388
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 1.3E-27 4.4E-32 215.4 14.7 156 185-353 2-158 (163)
2 2jzx_A Poly(RC)-binding protei 99.9 8.5E-28 2.9E-32 216.0 11.5 157 184-352 3-160 (160)
3 2anr_A Neuro-oncological ventr 99.9 1.6E-27 5.4E-32 218.0 11.6 163 183-353 3-177 (178)
4 1j4w_A FUSE binding protein; s 99.9 4.9E-26 1.7E-30 207.6 12.6 158 185-349 2-174 (174)
5 2jvz_A KH type-splicing, FAR u 99.9 1.4E-25 4.6E-30 201.7 12.2 155 186-351 2-160 (164)
6 2qnd_A FMR1 protein; KH domain 99.8 5.4E-19 1.8E-23 157.6 10.9 137 185-351 3-142 (144)
7 2e3u_A PH-DIM2P, hypothetical 99.7 1.6E-17 5.5E-22 157.9 8.8 154 185-357 33-197 (219)
8 3n89_A Defective in GERM LINE 99.7 1.6E-16 5.5E-21 161.3 11.5 162 183-350 27-260 (376)
9 1tua_A Hypothetical protein AP 99.6 5.9E-15 2E-19 137.5 9.5 148 187-353 5-162 (191)
10 2axy_A Poly(RC)-binding protei 99.5 9.3E-15 3.2E-19 115.7 7.0 71 276-352 3-73 (73)
11 1dtj_A RNA-binding neurooncolo 99.5 1.5E-14 5.2E-19 114.7 8.1 71 278-351 3-75 (76)
12 1zzk_A Heterogeneous nuclear r 99.5 3.2E-14 1.1E-18 114.9 9.1 74 275-352 4-77 (82)
13 1wvn_A Poly(RC)-binding protei 99.5 2.1E-14 7.2E-19 115.9 8.0 74 275-352 3-76 (82)
14 2p2r_A Poly(RC)-binding protei 99.5 1.8E-14 6.3E-19 114.5 7.0 73 276-352 3-75 (76)
15 1ec6_A RNA-binding protein NOV 99.5 3.7E-14 1.3E-18 115.7 6.4 73 278-353 3-77 (87)
16 2hh2_A KH-type splicing regula 99.5 8E-14 2.8E-18 118.3 8.2 74 279-353 8-81 (107)
17 1j5k_A Heterogeneous nuclear r 99.5 7.2E-14 2.5E-18 114.6 6.8 75 274-352 10-84 (89)
18 2opv_A KHSRP protein; KH domai 99.4 2.6E-13 8.8E-18 110.3 9.1 74 276-351 12-85 (85)
19 2anr_A Neuro-oncological ventr 99.4 1.2E-14 4.2E-19 132.4 1.3 139 117-261 18-175 (178)
20 1x4n_A FAR upstream element bi 99.4 2E-13 6.9E-18 112.7 8.5 75 275-353 12-86 (92)
21 2dgr_A Ring finger and KH doma 99.4 1.2E-13 4.1E-18 112.4 6.1 70 274-350 6-75 (83)
22 2axy_A Poly(RC)-binding protei 99.4 8.7E-14 3E-18 110.1 5.1 70 184-261 3-72 (73)
23 1x4m_A FAR upstream element bi 99.4 2.3E-13 8E-18 112.7 7.7 77 275-353 12-88 (94)
24 1we8_A Tudor and KH domain con 99.4 4.9E-13 1.7E-17 112.7 8.0 78 274-353 11-88 (104)
25 1zzk_A Heterogeneous nuclear r 99.4 4.7E-13 1.6E-17 108.0 7.3 72 184-261 5-76 (82)
26 2p2r_A Poly(RC)-binding protei 99.4 2.2E-13 7.6E-18 108.3 5.3 71 184-260 3-73 (76)
27 1wvn_A Poly(RC)-binding protei 99.4 3E-13 1E-17 109.1 6.0 72 184-261 4-75 (82)
28 2hh3_A KH-type splicing regula 99.4 8.5E-13 2.9E-17 112.0 7.3 72 278-353 11-82 (106)
29 2ctl_A Vigilin; K homology typ 99.3 1.9E-12 6.5E-17 108.1 8.0 72 277-351 16-87 (97)
30 1j5k_A Heterogeneous nuclear r 99.3 6.6E-13 2.3E-17 108.8 4.7 73 183-261 11-83 (89)
31 1vig_A Vigilin; RNA-binding pr 99.3 2.1E-12 7.3E-17 101.6 7.1 68 276-349 3-70 (71)
32 1dtj_A RNA-binding neurooncolo 99.3 1.2E-12 4.2E-17 103.6 5.6 68 186-259 3-73 (76)
33 2cte_A Vigilin; K homology typ 99.3 3.4E-12 1.2E-16 105.7 6.9 73 275-353 14-86 (94)
34 1x4n_A FAR upstream element bi 99.3 2.2E-12 7.6E-17 106.4 5.4 72 184-261 13-84 (92)
35 2jzx_A Poly(RC)-binding protei 99.3 1.7E-13 6E-18 122.6 -1.7 138 117-261 17-159 (160)
36 1x4m_A FAR upstream element bi 99.3 6.6E-12 2.3E-16 103.9 7.6 73 183-261 12-86 (94)
37 2ctm_A Vigilin; K homology typ 99.3 7E-12 2.4E-16 104.3 7.4 76 274-354 13-88 (95)
38 1ec6_A RNA-binding protein NOV 99.3 3E-12 1E-16 104.3 5.0 70 186-261 3-75 (87)
39 3krm_A Insulin-like growth fac 99.3 7.2E-12 2.5E-16 112.3 7.8 73 278-353 3-75 (163)
40 1j4w_A FUSE binding protein; s 99.3 5.4E-13 1.8E-17 121.2 0.3 135 117-257 15-172 (174)
41 2hh3_A KH-type splicing regula 99.2 7.3E-12 2.5E-16 106.2 5.6 70 186-261 11-80 (106)
42 2dgr_A Ring finger and KH doma 99.2 8.9E-12 3.1E-16 101.3 5.9 68 183-259 7-74 (83)
43 2opv_A KHSRP protein; KH domai 99.2 1.3E-11 4.4E-16 100.2 6.6 68 184-257 12-81 (85)
44 2jvz_A KH type-splicing, FAR u 99.2 2.4E-11 8.3E-16 108.6 8.5 74 278-353 2-75 (164)
45 2hh2_A KH-type splicing regula 99.2 1.1E-11 3.7E-16 105.1 5.5 69 187-261 8-79 (107)
46 2ctk_A Vigilin; K homology typ 99.2 2E-11 7E-16 103.1 6.7 71 276-352 15-85 (104)
47 1we8_A Tudor and KH domain con 99.2 2.1E-11 7.2E-16 102.7 5.7 71 184-260 13-85 (104)
48 1vig_A Vigilin; RNA-binding pr 99.1 7.3E-11 2.5E-15 92.8 6.0 64 185-256 4-67 (71)
49 2ctl_A Vigilin; K homology typ 99.1 1.1E-10 3.8E-15 97.3 5.9 57 184-240 15-72 (97)
50 2cte_A Vigilin; K homology typ 99.0 1E-10 3.5E-15 96.8 4.6 69 183-259 14-82 (94)
51 2ctj_A Vigilin; K homology typ 99.0 2.1E-10 7.2E-15 95.4 6.0 73 274-352 13-86 (95)
52 2ctf_A Vigilin; K homology typ 99.0 1.1E-09 3.7E-14 92.2 8.0 68 277-353 26-94 (102)
53 2ctm_A Vigilin; K homology typ 98.9 7.9E-10 2.7E-14 91.8 5.1 68 183-257 14-81 (95)
54 2ctk_A Vigilin; K homology typ 98.9 7.5E-10 2.6E-14 93.4 4.5 65 185-257 16-80 (104)
55 2cpq_A FragIle X mental retard 98.9 2.2E-09 7.4E-14 88.7 5.4 70 275-353 12-83 (91)
56 2ctf_A Vigilin; K homology typ 98.7 1.7E-08 5.7E-13 85.0 6.8 74 152-241 4-78 (102)
57 2ctj_A Vigilin; K homology typ 98.7 1E-08 3.4E-13 85.3 4.4 68 182-257 13-81 (95)
58 3n89_A Defective in GERM LINE 98.7 2.3E-08 7.9E-13 101.6 7.5 75 274-348 26-103 (376)
59 1k1g_A SF1-BO isoform; splicin 98.5 2.3E-07 7.9E-12 81.4 8.4 77 276-352 5-100 (131)
60 2qnd_A FMR1 protein; KH domain 98.5 6.5E-08 2.2E-12 85.9 4.5 66 188-259 69-140 (144)
61 2yqr_A KIAA0907 protein; struc 98.4 6.4E-07 2.2E-11 77.4 9.2 76 276-351 10-99 (119)
62 2cpq_A FragIle X mental retard 98.4 3.7E-08 1.3E-12 81.3 1.3 52 182-238 11-63 (91)
63 2bl5_A MGC83862 protein, quaki 98.2 1.1E-06 3.9E-11 77.8 4.8 74 278-351 2-101 (140)
64 2e3u_A PH-DIM2P, hypothetical 98.2 1.7E-06 5.7E-11 82.1 5.5 65 277-350 33-102 (219)
65 1k1g_A SF1-BO isoform; splicin 98.1 4.7E-06 1.6E-10 73.0 6.1 40 184-223 5-50 (131)
66 1tua_A Hypothetical protein AP 98.0 6.9E-06 2.4E-10 76.4 6.6 65 280-353 6-75 (191)
67 2bl5_A MGC83862 protein, quaki 98.0 6E-06 2.1E-10 73.2 4.8 38 186-223 2-45 (140)
68 2yqr_A KIAA0907 protein; struc 97.9 1.2E-05 4.2E-10 69.4 6.4 39 185-223 11-56 (119)
69 3u1k_A Polyribonucleotide nucl 97.9 1.1E-05 3.7E-10 87.2 7.2 64 276-349 565-629 (630)
70 2cxc_A NUSA; transcription ter 97.8 1.8E-05 6.3E-10 70.4 4.4 104 186-314 36-139 (144)
71 3v69_A Protein filia; RNA-bind 97.5 0.00019 6.4E-09 63.1 7.3 67 280-351 58-124 (140)
72 4aid_A Polyribonucleotide nucl 97.3 0.00012 4E-09 80.2 3.8 72 277-358 569-641 (726)
73 3u1k_A Polyribonucleotide nucl 97.1 0.00021 7.1E-09 77.2 3.3 49 185-239 566-614 (630)
74 3v69_A Protein filia; RNA-bind 97.0 0.00099 3.4E-08 58.6 5.9 53 187-240 57-109 (140)
75 1k0r_A NUSA; two component arr 96.2 0.005 1.7E-07 62.3 6.0 94 195-314 249-343 (366)
76 2asb_A Transcription elongatio 96.2 0.0049 1.7E-07 59.4 5.7 94 195-314 126-220 (251)
77 4aid_A Polyribonucleotide nucl 95.8 0.0015 5E-08 71.6 -0.1 49 185-239 569-617 (726)
78 3cdi_A Polynucleotide phosphor 95.0 0.0068 2.3E-07 66.4 1.8 67 277-353 559-626 (723)
79 1hh2_P NUSA, N utilization sub 94.6 0.046 1.6E-06 54.9 6.6 94 195-314 245-339 (344)
80 1e3p_A Guanosine pentaphosphat 94.2 0.0043 1.5E-07 68.3 -2.3 62 278-349 598-660 (757)
81 3cdi_A Polynucleotide phosphor 90.1 0.056 1.9E-06 59.2 0.0 48 186-239 560-607 (723)
82 2cxc_A NUSA; transcription ter 89.3 0.22 7.4E-06 44.1 3.1 37 278-314 36-72 (144)
83 1e3p_A Guanosine pentaphosphat 84.9 0.068 2.3E-06 58.9 -3.3 46 187-238 599-644 (757)
84 2asb_A Transcription elongatio 81.2 0.92 3.2E-05 43.6 3.4 38 186-223 184-221 (251)
85 1hh2_P NUSA, N utilization sub 77.5 1.4 4.8E-05 44.2 3.4 39 184-222 301-339 (344)
86 1k0r_A NUSA; two component arr 77.0 1.5 5E-05 44.4 3.4 39 185-223 306-344 (366)
87 2pt7_G HP1451, hypothetical pr 75.7 1.4 4.9E-05 39.1 2.6 32 187-218 34-65 (152)
88 1wh9_A 40S ribosomal protein S 68.7 2.1 7.2E-05 34.8 1.9 28 187-214 36-63 (92)
89 1wh9_A 40S ribosomal protein S 53.7 5 0.00017 32.6 1.5 27 279-305 36-62 (92)
90 2pt7_G HP1451, hypothetical pr 53.2 6 0.00021 35.0 2.1 29 279-307 34-62 (152)
91 3iev_A GTP-binding protein ERA 44.4 11 0.00037 36.2 2.6 38 185-222 239-285 (308)
92 3iev_A GTP-binding protein ERA 42.8 9.9 0.00034 36.4 2.0 39 276-314 238-285 (308)
93 3gku_A Probable RNA-binding pr 42.5 8.2 0.00028 36.4 1.3 34 187-220 93-126 (225)
94 3j20_C 30S ribosomal protein S 38.3 11 0.00038 35.1 1.5 27 188-214 42-68 (210)
95 3u5c_D RP13, YS3, 40S ribosoma 38.0 11 0.00039 35.8 1.5 29 187-215 45-73 (240)
96 2ba0_A Archeal exosome RNA bin 37.1 54 0.0019 30.5 6.1 57 281-347 139-195 (229)
97 2xzm_C KH domain containing pr 36.0 15 0.00052 34.9 2.1 29 187-215 48-76 (243)
98 3iz6_B 40S ribosomal protein S 34.4 12 0.0004 35.4 1.0 29 187-215 45-73 (227)
99 3r8n_C 30S ribosomal protein S 31.3 12 0.0004 34.8 0.4 27 188-214 63-89 (206)
100 2zkq_c 40S ribosomal protein S 29.4 15 0.0005 35.1 0.7 29 187-215 45-73 (243)
101 3u5c_D RP13, YS3, 40S ribosoma 29.1 23 0.00079 33.6 2.1 27 279-305 45-71 (240)
102 3i1m_C 30S ribosomal protein S 28.3 14 0.00048 35.0 0.4 27 188-214 64-90 (233)
103 2vqe_C 30S ribosomal protein S 27.4 20 0.0007 34.0 1.4 26 189-214 65-90 (239)
104 1wf3_A GTP-binding protein; GT 26.4 15 0.00053 35.1 0.3 35 188-222 232-275 (301)
105 3j20_C 30S ribosomal protein S 26.3 23 0.00078 33.0 1.5 36 279-314 41-83 (210)
106 3gku_A Probable RNA-binding pr 26.1 20 0.00069 33.7 1.1 31 279-309 93-123 (225)
107 2xzm_C KH domain containing pr 25.7 29 0.00098 33.0 2.0 28 278-305 47-74 (243)
108 3bbn_C Ribosomal protein S3; s 25.2 17 0.00058 33.9 0.4 28 188-215 72-99 (218)
109 3iz6_B 40S ribosomal protein S 24.4 24 0.00083 33.2 1.3 28 278-305 44-71 (227)
110 2z0s_A Probable exosome comple 24.3 1.4E+02 0.005 27.5 6.6 59 280-348 150-209 (235)
111 1wf3_A GTP-binding protein; GT 23.2 15 0.00051 35.3 -0.5 37 278-314 230-275 (301)
112 3r8n_C 30S ribosomal protein S 20.3 25 0.00084 32.6 0.4 35 280-314 63-101 (206)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=215.43 Aligned_cols=156 Identities=23% Similarity=0.401 Sum_probs=131.2
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccC-CCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhcc
Q 014254 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGT 263 (428)
Q Consensus 185 evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~-~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~ 263 (428)
+-+++|+||.+.+|.||||+|++||+|+++|||+|+|.+. .+++.+|+|+|+|+.+. +.+|..+++..+.+..
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~------v~~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA------QFKAQGRIYGKLKEEN 75 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH------HHHHHHHHHHHHHHTT
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHhccc
Confidence 3578999999999999999999999999999999999875 57889999999997654 6677777777665542
Q ss_pred cccccCCCCCCCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHH
Q 014254 264 SEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVY 343 (428)
Q Consensus 264 ~~~g~~~~~~~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~ 343 (428)
. +........+.+|.||.+++|+||||||++|++|++.|||+|+|+++..|. ...++.|+|+|++++|++|+.
T Consensus 76 ~-----~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~--~~~~~~v~I~G~~~~v~~A~~ 148 (163)
T 3krm_A 76 F-----FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPD--ENDQVIVKIIGHFYASQMAQR 148 (163)
T ss_dssp S-----SCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCC--TTSEEEEEEEECHHHHHHHHH
T ss_pred c-----cccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCC--CCCceEEEEEeCHHHHHHHHH
Confidence 1 112234567889999999999999999999999999999999999766665 234458999999999999999
Q ss_pred HHHHHhhhcC
Q 014254 344 NVTGRLRDNH 353 (428)
Q Consensus 344 lI~~~L~e~~ 353 (428)
+|.++|++.-
T Consensus 149 ~I~~~i~~~~ 158 (163)
T 3krm_A 149 KIRDILAQVK 158 (163)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 2
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.95 E-value=8.5e-28 Score=216.02 Aligned_cols=157 Identities=29% Similarity=0.518 Sum_probs=130.1
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhcc
Q 014254 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGT 263 (428)
Q Consensus 184 ~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~ 263 (428)
..++++|+||.+.+|.||||+|++||+|+++|||+|+|++. ++.+|+|+|+|+.++ +.+|..++.+.+.+..
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~------v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA------IFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH------HHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH------HHHHHHHHHHHHHhhc
Confidence 46899999999999999999999999999999999999873 678999999997543 6667776766655432
Q ss_pred cccccC-CCCCCCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHH
Q 014254 264 SEKGLD-FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342 (428)
Q Consensus 264 ~~~g~~-~~~~~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~ 342 (428)
. .... ........++.++.||.+++|+||||||++|++|++.|||+|+|.++..|. ++++.|+|+|++++|++|+
T Consensus 75 ~-~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~v~I~G~~~~v~~A~ 150 (160)
T 2jzx_A 75 S-SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECV 150 (160)
T ss_dssp T-SCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTT---CCEEEEEEEECHHHHHHHH
T ss_pred c-ccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCC---CCceEEEEEcCHHHHHHHH
Confidence 1 1111 011123468899999999999999999999999999999999998666665 6899999999999999999
Q ss_pred HHHHHHhhhc
Q 014254 343 YNVTGRLRDN 352 (428)
Q Consensus 343 ~lI~~~L~e~ 352 (428)
.+|.+++.|+
T Consensus 151 ~~I~~~i~e~ 160 (160)
T 2jzx_A 151 KQICVVMLET 160 (160)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999998763
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.94 E-value=1.6e-27 Score=218.00 Aligned_cols=163 Identities=21% Similarity=0.382 Sum_probs=129.4
Q ss_pred CCceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccC---CCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHh
Q 014254 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRL 259 (428)
Q Consensus 183 ~~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~---~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i 259 (428)
..+++++|+||.+.+|.||||+|++||+|+++|||+|+|++. .+++.+|+|+|+|+.++ +.+|..++.+.+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~------v~~A~~~I~~~~ 76 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA------LNAVHGFIAEKI 76 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH------HHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH------HHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999863 46889999999998653 566666666655
Q ss_pred hhccccccc-------C--CCCCCCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEE
Q 014254 260 IEGTSEKGL-------D--FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330 (428)
Q Consensus 260 ~e~~~~~g~-------~--~~~~~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVt 330 (428)
.+....... + .........+.+|.||.+++|+||||+|++|++|++.|||+|+|.++. .+...+++.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~--~~~~~~~~~v~ 154 (178)
T 2anr_A 77 REMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP--DGINLQNRVVT 154 (178)
T ss_dssp TCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------CCEEEEE
T ss_pred hccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC--CCCCCCceEEE
Confidence 442110000 0 001123457889999999999999999999999999999999998432 22346789999
Q ss_pred EEeCHHHHHHHHHHHHHHhhhcC
Q 014254 331 ISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 331 ItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
|+|++++|++|+.+|.++|+++|
T Consensus 155 I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 155 VSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp EESSHHHHHHHHHHHHHHHHSCC
T ss_pred EEcCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999876
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.93 E-value=4.9e-26 Score=207.61 Aligned_cols=158 Identities=22% Similarity=0.347 Sum_probs=123.7
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhccc
Q 014254 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264 (428)
Q Consensus 185 evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~~ 264 (428)
..+++|+||.+.+|.||||+|++||+|+++|||+|+|.+..+++.+|+|+|+|+.++ +.+|..+|.+.+.+...
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~------v~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR------AQHAAEIITDLLRSVQA 75 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH------HHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH------HHHHHHHHHHHHHhccc
Confidence 467899999999999999999999999999999999987666788999999998653 55666666554443210
Q ss_pred cc-c--------c-----CCC-CCCCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEE
Q 014254 265 EK-G--------L-----DFS-SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329 (428)
Q Consensus 265 ~~-g--------~-----~~~-~~~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvV 329 (428)
.. + . .+. .......+.+|.||.+++|+||||+|++|++|++.|||+|+|.++. +.+..++++.|
T Consensus 76 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~-~~~~~~~~~~v 154 (174)
T 1j4w_A 76 GNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP-PPNADPNMKLF 154 (174)
T ss_dssp ----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC-TTTSCTTEEEE
T ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC-CCCCCCCceEE
Confidence 00 0 0 000 0012346889999999999999999999999999999999998543 33445778999
Q ss_pred EEEeCHHHHHHHHHHHHHHh
Q 014254 330 QISGEFSKVKDAVYNVTGRL 349 (428)
Q Consensus 330 tItGt~~aV~~A~~lI~~~L 349 (428)
+|+|++++|+.|+++|.++|
T Consensus 155 ~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 155 TIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEECCHHHHHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHHHhC
Confidence 99999999999999999875
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=201.74 Aligned_cols=155 Identities=21% Similarity=0.327 Sum_probs=123.7
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccC--CCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhcc
Q 014254 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGT 263 (428)
Q Consensus 186 vt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~--~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~ 263 (428)
++++|+||.+.+|.||||+|++||+|+++|||+|+|.+. .++..+|+|+|+|+.+. +.+|...+.+.+.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~------v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK------VQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH------HHHHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHHhcc
Confidence 678999999999999999999999999999999999754 35678999999997553 6667777766654422
Q ss_pred cccccCCCC--CCCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHH
Q 014254 264 SEKGLDFSS--NKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341 (428)
Q Consensus 264 ~~~g~~~~~--~~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A 341 (428)
. .+..... ......+.+|.||.+++|+||||+|++|++|++.|||+|+|.++. + ...++.|+|+|++++|+.|
T Consensus 76 ~-~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~-~---~~~~~~v~I~G~~~~v~~A 150 (164)
T 2jvz_A 76 Q-GGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-G---TGPEKIAHIMGPPDRCEHA 150 (164)
T ss_dssp S-CCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC-T---TSSEEEEEEESCHHHHHHH
T ss_pred C-CCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC-C---CCCcEEEEEEcCHHHHHHH
Confidence 1 1111100 011134578999999999999999999999999999999998431 2 2568999999999999999
Q ss_pred HHHHHHHhhh
Q 014254 342 VYNVTGRLRD 351 (428)
Q Consensus 342 ~~lI~~~L~e 351 (428)
+.+|.++|++
T Consensus 151 ~~~I~~~i~~ 160 (164)
T 2jvz_A 151 ARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 6
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.78 E-value=5.4e-19 Score=157.63 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=99.7
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhccc
Q 014254 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264 (428)
Q Consensus 185 evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~~ 264 (428)
.++.+|+||++.+|++|||+|++|++|++++| |.+.... ...++.+...++++ ++..+.. +.+.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~----------~v~~~~~-~l~~-- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQD----------AVKKARS-FLEF-- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHH----------HHHHHHH-HHCE--
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHH----------HHHHHHH-hhhc--
Confidence 46889999999999999999999999999999 5553321 22344443333332 1222211 2110
Q ss_pred ccccCCCCCCCceeEEEEEeccccccceeCCCCchHHHHHHHhCC-eEEEccCCccccCCCCCc--EEEEEeCHHHHHHH
Q 014254 265 EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGT-SIRIISDQLLKCISENDR--VVQISGEFSKVKDA 341 (428)
Q Consensus 265 ~~g~~~~~~~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA-~IqI~~d~~P~~~~s~eR--vVtItGt~~aV~~A 341 (428)
...++.||.+++|++|||+|++|+.|++.||| +|+|..+..+.. ..+++ .|+|+|++++|+.|
T Consensus 67 -------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~-~~~~~~~~vtI~G~~~~v~~A 132 (144)
T 2qnd_A 67 -------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV-PQEEGMVPFVFVGTKDSIANA 132 (144)
T ss_dssp -------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC-CCCTTEEEEEEEEEHHHHHHH
T ss_pred -------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc-cccCCeeEEEEEeCHHHHHHH
Confidence 13789999999999999999999999999997 999993321111 12344 48999999999999
Q ss_pred HHHHHHHhhh
Q 014254 342 VYNVTGRLRD 351 (428)
Q Consensus 342 ~~lI~~~L~e 351 (428)
+.+|.++|++
T Consensus 133 k~li~~~l~~ 142 (144)
T 2qnd_A 133 TVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 7
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.70 E-value=1.6e-17 Score=157.85 Aligned_cols=154 Identities=14% Similarity=0.195 Sum_probs=110.4
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhccc
Q 014254 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264 (428)
Q Consensus 185 evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~~ 264 (428)
....++.||.+.+|.|||++|++|+.|+++|||+|.|.. +++.|+|.|+.... ....+++|...|.+......+
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~-d~~~i~kA~~~I~~i~rg~~~ 106 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETE-DPLAVWKARDIVLAIGRGFSP 106 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCC-SHHHHHHHHHHHHHHHTTCCH
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCC-CHHHHHHHHHHHHHHhccCCc
Confidence 346689999999999999999999999999999999972 46789999865211 112366666666553321111
Q ss_pred ccccCCCCCCCceeEEEEEec-----------cccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEe
Q 014254 265 EKGLDFSSNKGLLVNARLVVA-----------SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333 (428)
Q Consensus 265 ~~g~~~~~~~~~~vt~~L~VP-----------~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItG 333 (428)
+.+...- .+......+.|+ ...+|+||||+|++|+.|++.|||+|.|. ++.|+|.|
T Consensus 107 e~g~~ll--~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~-----------~~~v~i~G 173 (219)
T 2e3u_A 107 ERAFRLL--NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY-----------GKTVAIIG 173 (219)
T ss_dssp HHHGGGG--STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE-----------TTEEEEEE
T ss_pred cccceec--cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC-----------CeEEEEEe
Confidence 1110000 011111123333 23689999999999999999999999995 35699999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCc
Q 014254 334 EFSKVKDAVYNVTGRLRDNHFSGT 357 (428)
Q Consensus 334 t~~aV~~A~~lI~~~L~e~~~~~~ 357 (428)
++++++.|..+|.++|.+.+++..
T Consensus 174 ~~~~i~~A~~~i~~li~g~~~~~v 197 (219)
T 2e3u_A 174 NPIQIEIAKTAIEKLARGSPHGSV 197 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCcHHH
Confidence 999999999999999987765543
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.67 E-value=1.6e-16 Score=161.32 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=115.1
Q ss_pred CCceEEEEEeccccccceeccCc--hHHHHHHHHhCCcEEEccCC-----CCCCceEEEeeCCCCCCcCccHHHHHHHHH
Q 014254 183 QQEVSFRILCSNDKVGAVIGKGG--TIIRALQSEAGAFISVGATM-----PECDERLITVTASEGPESRYSPAQKAVVLV 255 (428)
Q Consensus 183 ~~evt~rIlVP~~~vG~IIGKgG--~tIK~IqeeTGA~I~Is~~~-----p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I 255 (428)
...+++++.||...++.|||||| ++|++|+++|||+|+|++.. +......|+|+|..++ +.+|-.++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~en------VE~AR~~I 100 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGD------VDRARMLM 100 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHH------HHHHHHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHH------HHHHHHHH
Confidence 45699999999999999999999 99999999999999998743 1234578999998765 33333222
Q ss_pred HH---------------------Hhhhc--c------c---cc--c--cC---------------------------CCC
Q 014254 256 FS---------------------RLIEG--T------S---EK--G--LD---------------------------FSS 272 (428)
Q Consensus 256 ~~---------------------~i~e~--~------~---~~--g--~~---------------------------~~~ 272 (428)
.+ ..+.. . + .. + .+ ...
T Consensus 101 ~~l~Pl~i~~elp~~~i~~~~l~~~I~qq~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~ 180 (376)
T 3n89_A 101 RRNCHFTVFMALSKMKMPLHELQAHVRQNPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRESP 180 (376)
T ss_dssp HHSCEEEEEEECTTCSSCHHHHHHHHHHCCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--C
T ss_pred HhcCCceEEEEccccccCcchhhhhhccceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhc
Confidence 21 01110 0 0 00 0 00 000
Q ss_pred CCCceeEEEEEeccccccceeCCCC--chHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhh
Q 014254 273 NKGLLVNARLVVASNQVGCLLGKGG--TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350 (428)
Q Consensus 273 ~~~~~vt~~L~VP~s~VG~IIGKgG--~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~ 350 (428)
.....++..+.|+..++..||||+| ..|++|+++|||+|++++...+.....+...|+|+|+.++|.+|..+|.++|=
T Consensus 181 ~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLP 260 (376)
T 3n89_A 181 APENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLLP 260 (376)
T ss_dssp CCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTSE
T ss_pred ccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhCC
Confidence 1134688999999999999999999 56799999999999999432222111345689999999999999999999885
No 9
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.56 E-value=5.9e-15 Score=137.50 Aligned_cols=148 Identities=18% Similarity=0.237 Sum_probs=105.8
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhccccc
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEK 266 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~~~~ 266 (428)
.++++||.+.+|.|||++|++++.|++.+|++|++. ..++.|+|..+.... ....+++|...|..-...-.++.
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~-dp~~i~KA~dlI~ai~rgf~~e~ 78 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGI-PPVNLMKAAEVVKAISLGFPPEK 78 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTS-CHHHHHHHHHHHHHHHHTCCHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCC-CHHHHHHHHHHHHHHHcCCCHHH
Confidence 368999999999999999999999999999999997 457888888432211 12236666655543222111111
Q ss_pred ccCCCCCCCceeEEEEEec----------cccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHH
Q 014254 267 GLDFSSNKGLLVNARLVVA----------SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFS 336 (428)
Q Consensus 267 g~~~~~~~~~~vt~~L~VP----------~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~ 336 (428)
.... . .+..+...+.++ ...+|+||||+|.+|+.|+..|||+|.|. +..|.|.|+++
T Consensus 79 A~~L-l-~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~-----------~~~v~i~G~~~ 145 (191)
T 1tua_A 79 AFRL-L-EEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG-----------EYEVAIIGDYE 145 (191)
T ss_dssp HGGG-G-STTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC-----------SSEEEEEEEHH
T ss_pred hhhc-c-cCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc-----------CCEEEEEeChH
Confidence 0000 0 112222223344 23689999999999999999999999995 23799999999
Q ss_pred HHHHHHHHHHHHhhhcC
Q 014254 337 KVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 337 aV~~A~~lI~~~L~e~~ 353 (428)
+++.|...|..+|...+
T Consensus 146 ~i~~Ar~~i~~li~g~~ 162 (191)
T 1tua_A 146 RAMAAKQAIEMLAEGRM 162 (191)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999997544
No 10
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.53 E-value=9.3e-15 Score=115.74 Aligned_cols=71 Identities=23% Similarity=0.495 Sum_probs=64.5
Q ss_pred ceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhc
Q 014254 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (428)
Q Consensus 276 ~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~ 352 (428)
..++.+|+||.+.+|+||||||++|++|++.|||+|+|.++ +..+|.|+|+|+++++.+|+.+|.++|+++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999999843 256899999999999999999999999864
No 11
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.53 E-value=1.5e-14 Score=114.72 Aligned_cols=71 Identities=31% Similarity=0.485 Sum_probs=63.5
Q ss_pred eEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccC--CccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhh
Q 014254 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD--QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (428)
Q Consensus 278 vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d--~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e 351 (428)
.+.++.||.+++|+||||||++|++|++.|||+|+|.++ ..| ++.++.|+|+|++++++.|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP---GTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCST---TCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCC---CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999943 233 36789999999999999999999999865
No 12
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.52 E-value=3.2e-14 Score=114.91 Aligned_cols=74 Identities=26% Similarity=0.581 Sum_probs=66.4
Q ss_pred CceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhc
Q 014254 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (428)
Q Consensus 275 ~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~ 352 (428)
+..++.+|.||.+++|+||||+|++|++|++.|||+|+|.++ .| +++++.|+|+|++++|++|+.+|.+++.+.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT-TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC-CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 456889999999999999999999999999999999999732 23 367899999999999999999999999864
No 13
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.52 E-value=2.1e-14 Score=115.91 Aligned_cols=74 Identities=28% Similarity=0.578 Sum_probs=65.6
Q ss_pred CceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhc
Q 014254 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (428)
Q Consensus 275 ~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~ 352 (428)
+..++.+|.||.+++|+||||||++|++|++.|||+|+|.++ . .++.++.|+|+|+++++++|+.+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-V---EGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-C---TTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-C---CCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 456789999999999999999999999999999999999842 2 2478999999999999999999999999876
No 14
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=114.54 Aligned_cols=73 Identities=27% Similarity=0.559 Sum_probs=65.7
Q ss_pred ceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhc
Q 014254 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (428)
Q Consensus 276 ~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~ 352 (428)
..++.+|.||.+++|+||||||++|++|++.|||+|+|.+. .| ++.++.|+|+|+++++++|+.+|.+++.+.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-VE---GSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-CT---TCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-CC---CCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 46788999999999999999999999999999999999842 23 478999999999999999999999998753
No 15
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=3.7e-14 Score=115.66 Aligned_cols=73 Identities=30% Similarity=0.474 Sum_probs=65.3
Q ss_pred eEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccC--CccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD--QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 278 vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d--~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
.+.+|.||.+++|+||||||++|++|++.|||+|+|.++ ..|+ +.++.|+|+|++++++.|+.+|.++|.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g---~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG---TRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTT---SCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCC---CCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999943 2343 678999999999999999999999998643
No 16
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8e-14 Score=118.26 Aligned_cols=74 Identities=15% Similarity=0.286 Sum_probs=65.5
Q ss_pred EEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 279 t~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
+.+|.||.+++|+||||+|++|++|+++|||+|+|.++..+. .+.+++.|+|+|++++|++|+.+|.++|.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~-~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPN-GDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTT-CCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCC-CCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 679999999999999999999999999999999998543332 23578999999999999999999999998654
No 17
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.46 E-value=7.2e-14 Score=114.62 Aligned_cols=75 Identities=25% Similarity=0.569 Sum_probs=67.3
Q ss_pred CCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhc
Q 014254 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (428)
Q Consensus 274 ~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~ 352 (428)
....++.+|.||.+++|+||||+|++|++|+++|||+|+|.++ .| +++++.|+|+|++++|++|+.+|.+++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC-CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC-CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999999999999999999999999732 23 367899999999999999999999999874
No 18
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=110.31 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=65.1
Q ss_pred ceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhh
Q 014254 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (428)
Q Consensus 276 ~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e 351 (428)
.....+|.||.+.+|+||||||++|++|+++|||+|.|..+..+ ..+.+|.|+|+|+++++++|+.+|.+++++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS--STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC--CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999854332 236789999999999999999999998864
No 19
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.44 E-value=1.2e-14 Score=132.43 Aligned_cols=139 Identities=16% Similarity=0.250 Sum_probs=100.9
Q ss_pred chhhhhcCccccccccccCC----CCCcccCCCCCceecccCCCcccccccccCCccccccccc-------------hhh
Q 014254 117 ALSIETQHRLFGAVSQEILP----DLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVAT-------------LDA 179 (428)
Q Consensus 117 ~~~~~~~~~~~~~v~~~~~~----~~~~d~~Pgt~~rv~ti~Gs~~~~~~a~~~~~~e~~~~~~-------------~~~ 179 (428)
+.-|+.||..+..++++|.. +...+++|+..+|+++|.|...++..+...+.......+. ...
T Consensus 18 g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (178)
T 2anr_A 18 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTT 97 (178)
T ss_dssp HHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC---------------
T ss_pred eeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCccccCCcccccCCccC
Confidence 34689999999999999842 1345789999999999999876666554332211111100 000
Q ss_pred hccCCceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccC--CCCCCceEEEeeCCCCCCcCccHHHHHHHHHHH
Q 014254 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPECDERLITVTASEGPESRYSPAQKAVVLVFS 257 (428)
Q Consensus 180 ~~~~~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~--~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~ 257 (428)
...+...+++|+||.+.+|.||||+|++||+|+++|||+|+|.+. .++..+|+|+|+|+.++ +.+|..++.+
T Consensus 98 ~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~------v~~A~~~I~~ 171 (178)
T 2anr_A 98 VNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQ------NRKAVELIIQ 171 (178)
T ss_dssp --CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHH------HHHHHHHHHH
T ss_pred CCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHH------HHHHHHHHHH
Confidence 112345789999999999999999999999999999999999864 24567899999998654 6777777777
Q ss_pred Hhhh
Q 014254 258 RLIE 261 (428)
Q Consensus 258 ~i~e 261 (428)
.+.+
T Consensus 172 ~i~e 175 (178)
T 2anr_A 172 KIQE 175 (178)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 6654
No 20
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.44 E-value=2e-13 Score=112.66 Aligned_cols=75 Identities=21% Similarity=0.351 Sum_probs=67.2
Q ss_pred CceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 275 ~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.++. + +..++.|+|+|++++|++|+.+|.++|.+..
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-G---GLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 4568899999999999999999999999999999999998432 2 3578999999999999999999999998754
No 21
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=112.39 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=62.8
Q ss_pred CCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhh
Q 014254 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350 (428)
Q Consensus 274 ~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~ 350 (428)
.....+.+|.||.+++|+||||+|++||+|+++|||+|+|++. .+++.|+|+|+++++++|+++|.+++.
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-------~~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR-------DKEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS-------SSCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC-------CCCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999999999999832 236899999999999999999999875
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.43 E-value=8.7e-14 Score=110.15 Aligned_cols=70 Identities=30% Similarity=0.596 Sum_probs=61.0
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhh
Q 014254 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (428)
Q Consensus 184 ~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e 261 (428)
..++++|+||++.+|.||||||++||+|+++|||+|+|++. ++++|+|+|+|+.+. +.+|..++...+.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~------v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA------IFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHH------HHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHH------HHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999974 678999999998654 67777777776643
No 23
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.42 E-value=2.3e-13 Score=112.72 Aligned_cols=77 Identities=23% Similarity=0.394 Sum_probs=67.5
Q ss_pred CceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 275 ~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.++..+. ...+|.|+|+|++++|++|+.+|.++|.+.-
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN--TGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS--SCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC--CCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 4668899999999999999999999999999999999998543321 2478999999999999999999999997643
No 24
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.40 E-value=4.9e-13 Score=112.72 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=67.4
Q ss_pred CCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 274 ~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
.....+.+|.||.+++|+||||||++|++|+++|||+|+|.++..+ ..+.++.|+|+|+.+++++|+.+|.+++.+.+
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG--TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 3456789999999999999999999999999999999999843211 12468999999999999999999999998765
No 25
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.39 E-value=4.7e-13 Score=108.03 Aligned_cols=72 Identities=26% Similarity=0.500 Sum_probs=61.9
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhh
Q 014254 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (428)
Q Consensus 184 ~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e 261 (428)
..++++|+||.+.+|.||||+|++||+|+++|||+|+|.+..++.++|+|+|+|+.++ +.+|..++...+.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~------v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ------IQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHH------HHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHH------HHHHHHHHHHHHHh
Confidence 4588999999999999999999999999999999999998777889999999998653 66666666665543
No 26
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.39 E-value=2.2e-13 Score=108.27 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=62.1
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhh
Q 014254 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260 (428)
Q Consensus 184 ~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~ 260 (428)
..++++|+||.+.+|.||||||++||+|+++|||+|+|.+..+++.+|.|+|+|+.++ +.+|..++.+.+.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~------v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS------ISLAQYLINVRLS 73 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHH------HHHHHHHHHHHHT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHH------HHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999998778889999999998653 6677777766554
No 27
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=3e-13 Score=109.12 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=62.3
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhh
Q 014254 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (428)
Q Consensus 184 ~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e 261 (428)
..++++|+||.+.+|.||||||++||+|+++|||+|+|.+..++..+|.|+|+|+.++ +.+|..++.+.+.+
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~------v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAAS------ISLAQYLINARLSS 75 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHH------HHHHHHHHHHHTC-
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999998777889999999998653 66777777766543
No 28
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=8.5e-13 Score=112.00 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=63.9
Q ss_pred eEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 278 vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.++. + .+.+|.|+|+|++++|++|+.+|.+++.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~-~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-G---TGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC-S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC-C---CCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 3679999999999999999999999999999999998432 2 2568999999999999999999999998754
No 29
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=1.9e-12 Score=108.05 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=64.2
Q ss_pred eeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhh
Q 014254 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (428)
Q Consensus 277 ~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e 351 (428)
..+..|.||.+++|.||||||++|++|+++|||+|+|+.+..|. ..++.|+|+|+.+++.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~---~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN---QPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS---SCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC---CCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999998543332 4788999999999999999999998864
No 30
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.33 E-value=6.6e-13 Score=108.85 Aligned_cols=73 Identities=26% Similarity=0.489 Sum_probs=62.9
Q ss_pred CCceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhh
Q 014254 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (428)
Q Consensus 183 ~~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e 261 (428)
...++++|+||.+.+|.||||+|++||+|+++|||+|+|.+..+++++|+|+|+|+.++ +.+|..+|.+.+.+
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~------v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ------IQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHH------HHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHH------HHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999998777889999999998654 66677666665543
No 31
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.33 E-value=2.1e-12 Score=101.65 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=60.6
Q ss_pred ceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHh
Q 014254 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349 (428)
Q Consensus 276 ~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L 349 (428)
...+..|.||.+++|.|||+||++|++|+++|||+|+|+.+. ..++.|+|+|+.+++++|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999998432 35689999999999999999998864
No 32
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.32 E-value=1.2e-12 Score=103.64 Aligned_cols=68 Identities=29% Similarity=0.466 Sum_probs=58.0
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccC---CCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHh
Q 014254 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRL 259 (428)
Q Consensus 186 vt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~---~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i 259 (428)
.+++|+||.+.+|.||||||++||+|+++|||+|+|.+. .++..+|.|+|+|+.++ +.+|..++.+.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~------v~~A~~~I~~~i 73 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAA------TQAAQYLISQRV 73 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHH------HHHHHHHHHHHC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHH------HHHHHHHHHHHH
Confidence 578999999999999999999999999999999999864 46778999999998553 666666666544
No 33
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=3.4e-12 Score=105.72 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=64.7
Q ss_pred CceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 275 ~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
...++.+|.||.+++|.|||+||++|++|+++|||+|+|+... ..++.|+|+|+++++.+|..+|..++.+..
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD------DPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT------SSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC------CCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 4568899999999999999999999999999999999998321 235789999999999999999999998654
No 34
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.29 E-value=2.2e-12 Score=106.41 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=61.3
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhh
Q 014254 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (428)
Q Consensus 184 ~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e 261 (428)
..++++|+||.+.+|.||||+|++||+|+++|||+|+|.+..++..+|.|+|+|+.++ +.+|..+|.+.+.+
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~------v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES------VQSAKRLLDQIVEK 84 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHH------HHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHH------HHHHHHHHHHHHHh
Confidence 4588999999999999999999999999999999999998766788999999998653 66666666655443
No 35
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=1.7e-13 Score=122.56 Aligned_cols=138 Identities=17% Similarity=0.285 Sum_probs=97.8
Q ss_pred chhhhhcCccccccccccCCCCCcccCCCCCceecccCCCcccccccccCCccccccc--cchh--hhccCCceEEEEEe
Q 014254 117 ALSIETQHRLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRV--ATLD--ARTQQQEVSFRILC 192 (428)
Q Consensus 117 ~~~~~~~~~~~~~v~~~~~~~~~~d~~Pgt~~rv~ti~Gs~~~~~~a~~~~~~e~~~~--~~~~--~~~~~~evt~rIlV 192 (428)
++-|+.||..+..++.++......+- ++..+|+++|.|...++..+...+.....+. .+.. .......++++|+|
T Consensus 17 g~iIGkgG~~Ik~i~~~tg~~I~i~~-~~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~v 95 (160)
T 2jzx_A 17 GSIIGKKGESVKKMREESGARINISE-GNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVV 95 (160)
T ss_dssp HHHHCGGGHHHHHHHHHHCSEEEEEC-CTTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEE
T ss_pred eeeECCCcHHHHHHHHHHCCEEEEcC-CCCCceEEEEEeCHHHHHHHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEE
Confidence 44689999999999999854222211 2466899999998766655544332211110 0000 01123358999999
Q ss_pred ccccccceeccCchHHHHHHHHhCCcEEEccC-CCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhh
Q 014254 193 SNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (428)
Q Consensus 193 P~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~-~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e 261 (428)
|.+.+|.||||+|++||+|+++|||+|+|.+. .++++++.|+|+|+.++ +.+|..++.+.+.|
T Consensus 96 p~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~------v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 96 PASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQS------IIECVKQICVVMLE 159 (160)
T ss_dssp EHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHH------HHHHHHHHHHHHHH
T ss_pred ChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHhc
Confidence 99999999999999999999999999999863 57788999999997654 66677666665543
No 36
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.27 E-value=6.6e-12 Score=103.93 Aligned_cols=73 Identities=26% Similarity=0.369 Sum_probs=61.4
Q ss_pred CCceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCC--CCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhh
Q 014254 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP--ECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260 (428)
Q Consensus 183 ~~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p--~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~ 260 (428)
...++++|+||.+++|.||||+|++||+|+++|||+|+|.+... ..++|+|+|+|+.+. +.+|..+|...+.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~------v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYK------VQQAKEMVLELIR 85 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTT------HHHHHHHHHHHHC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHH------HHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999987532 457999999998775 6777777776654
Q ss_pred h
Q 014254 261 E 261 (428)
Q Consensus 261 e 261 (428)
+
T Consensus 86 ~ 86 (94)
T 1x4m_A 86 D 86 (94)
T ss_dssp C
T ss_pred c
Confidence 4
No 37
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=7e-12 Score=104.27 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 274 ~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
....++..+.||.+++|.|||+||++|++|+++|||+|+|+.+. ..+++.|+|+|++++|++|+.+|..++.+..
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-----~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-----APDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-----CSCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-----CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999998431 1357899999999999999999999998766
Q ss_pred C
Q 014254 354 F 354 (428)
Q Consensus 354 ~ 354 (428)
.
T Consensus 88 ~ 88 (95)
T 2ctm_A 88 A 88 (95)
T ss_dssp T
T ss_pred H
Confidence 4
No 38
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=3e-12 Score=104.32 Aligned_cols=70 Identities=30% Similarity=0.444 Sum_probs=59.2
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccC---CCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhh
Q 014254 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (428)
Q Consensus 186 vt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~---~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e 261 (428)
.+++|+||.+.+|.||||||++||+|+++|||+|+|.+. .+++.+|.|+|+|+.++ +.+|..+|...+.+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~------v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAA------TQAAQYLISQRVTY 75 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHH------HHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999864 46788999999998653 66666666665543
No 39
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.26 E-value=7.2e-12 Score=112.33 Aligned_cols=73 Identities=22% Similarity=0.390 Sum_probs=66.6
Q ss_pred eEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 278 vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
.+++|+||.+.+|.||||+|++|++|++.|||+|+|..+..|+ +.+|.|+|+|+++++.+|+.+|.+++.+..
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~---~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPD---SKVRMVIITGPPEAQFKAQGRIYGKLKEEN 75 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTT---CSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCC---CCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999999999999998554444 789999999999999999999999998774
No 40
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.26 E-value=5.4e-13 Score=121.19 Aligned_cols=135 Identities=14% Similarity=0.185 Sum_probs=93.1
Q ss_pred chhhhhcCccccccccccCCCCCcc-cCCCCCceecccCCCcccccccccCCccccccccc--h----------------
Q 014254 117 ALSIETQHRLFGAVSQEILPDLHVD-ILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVAT--L---------------- 177 (428)
Q Consensus 117 ~~~~~~~~~~~~~v~~~~~~~~~~d-~~Pgt~~rv~ti~Gs~~~~~~a~~~~~~e~~~~~~--~---------------- 177 (428)
++-|+.||..|..++.++......+ ..++..+|+++|.|...++..|...+......... .
T Consensus 15 g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 94 (174)
T 1j4w_A 15 GIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGN 94 (174)
T ss_dssp HHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred eeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCc
Confidence 3468999999999999986433222 24678889999999976666554333211100000 0
Q ss_pred -hhhccCCceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCC---CCCCceEEEeeCCCCCCcCccHHHHHHH
Q 014254 178 -DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEGPESRYSPAQKAVV 253 (428)
Q Consensus 178 -~~~~~~~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~---p~s~ERvVtItGs~e~~~~~s~a~~Ai~ 253 (428)
........++++|+||.+.+|.||||+|++||+|+++|||+|+|.+.. .+..+|+|+|+|+.++ +.+|..
T Consensus 95 ~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~------v~~A~~ 168 (174)
T 1j4w_A 95 WNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQ------IDYARQ 168 (174)
T ss_dssp ---------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHH------HHHHHH
T ss_pred cccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHH------HHHHHH
Confidence 000112346889999999999999999999999999999999998642 2467899999997653 556665
Q ss_pred HHHH
Q 014254 254 LVFS 257 (428)
Q Consensus 254 ~I~~ 257 (428)
+|.+
T Consensus 169 ~I~~ 172 (174)
T 1j4w_A 169 LIEE 172 (174)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 41
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=7.3e-12 Score=106.22 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=58.4
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhh
Q 014254 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (428)
Q Consensus 186 vt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e 261 (428)
.+++|+||.+++|.||||+|++||+|+++|||+|+|.+..++..+|+|+|+|+.++ +.+|..+|.+.+.+
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~------v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDR------CEHAARIINDLLQS 80 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHH------HHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHH------HHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999987666778999999998653 55666666555443
No 42
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=8.9e-12 Score=101.29 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=58.0
Q ss_pred CCceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHh
Q 014254 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRL 259 (428)
Q Consensus 183 ~~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i 259 (428)
...++++|.||.+.+|+||||+|++||+|+++|||+|+|++. .++++|+|+|+.+. +.+|..+|...+
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~---~~~~~v~ItG~~e~------v~~A~~~I~~~i 74 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR---DKEPVFAVTGMPEN------VDRAREEIEAHI 74 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS---SSCCEEEEEECTTT------HHHHHHHHHHHH
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC---CCCCeEEEEcCHHH------HHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999742 34799999999876 667777776643
No 43
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=100.21 Aligned_cols=68 Identities=25% Similarity=0.327 Sum_probs=56.2
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCC--CCCCceEEEeeCCCCCCcCccHHHHHHHHHHH
Q 014254 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM--PECDERLITVTASEGPESRYSPAQKAVVLVFS 257 (428)
Q Consensus 184 ~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~--p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~ 257 (428)
...+.+|.||.+++|.||||+|++||+|+++|||+|+|.+.. +...+|.|+|+|+++. +.+|..+|..
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~------v~~A~~~I~~ 81 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK------VQQACEMVMD 81 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHH------HHHHHHHHHH
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHH------HHHHHHHHHH
Confidence 457889999999999999999999999999999999998752 3678999999996543 5555555544
No 44
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.21 E-value=2.4e-11 Score=108.61 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=65.2
Q ss_pred eEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 278 vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
++.+|+||.+++|+||||+|++|++|++.|||+|++..+. + +.+..+|.|+|+|++++|.+|+.+|.+++.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~-~-~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-S-QNTNVDKPLRIIGDPYKVQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCT-T-SSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCC-C-CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Confidence 4679999999999999999999999999999999998432 1 123678999999999999999999999998765
No 45
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=105.14 Aligned_cols=69 Identities=22% Similarity=0.427 Sum_probs=58.0
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCC---CCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhh
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~---p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e 261 (428)
+++|+||.+++|.||||+|++||+|+++|||+|+|.+.. .+..+|+|+|+|+.++ +.+|..+|.+.+.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~------v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQ------IDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHH------HHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHH------HHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999998752 3457899999997664 66777777766544
No 46
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=2e-11 Score=103.07 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=62.7
Q ss_pred ceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhc
Q 014254 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (428)
Q Consensus 276 ~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~ 352 (428)
...+..|.||.+++|.|||+||++|++|+++|||+|+|+.+. ...+.|+|+|+.+++++|+.+|..++.+.
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 357889999999999999999999999999999999998431 23468999999999999999999988754
No 47
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.17 E-value=2.1e-11 Score=102.68 Aligned_cols=71 Identities=24% Similarity=0.384 Sum_probs=57.9
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCC--CCceEEEeeCCCCCCcCccHHHHHHHHHHHHhh
Q 014254 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE--CDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260 (428)
Q Consensus 184 ~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~--s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~ 260 (428)
..++++|+||.+.+|.||||||++||+|+++|||+|+|.+...+ .++|.|+|+|+.+. +.+|..+|...+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~------v~~A~~~I~~~i~ 85 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE------VAAAKHLILEKVS 85 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHH------HHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHH------HHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999875333 36899999998663 5566666655443
No 48
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.11 E-value=7.3e-11 Score=92.81 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=53.1
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHH
Q 014254 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256 (428)
Q Consensus 185 evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~ 256 (428)
..+..|.||.+.+|.||||||++|++|+++|||+|+|++ .+..+|.|+|+|..+. +.+|..++.
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~--~g~~~~~V~I~G~~~~------v~~A~~~I~ 67 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP--DSEKSNLIRIEGDPQG------VQQAKRELL 67 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCC--CCSSSEEEEEEESSHH------HHHHHHHHH
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECC--CCCcccEEEEEcCHHH------HHHHHHHHH
Confidence 467889999999999999999999999999999999986 3447799999998542 455554443
No 49
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=1.1e-10 Score=97.29 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=50.1
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCC-CCCCceEEEeeCCCC
Q 014254 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM-PECDERLITVTASEG 240 (428)
Q Consensus 184 ~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~-p~s~ERvVtItGs~e 240 (428)
..+++.|.||.+.+|.||||||++|++|+++|||+|+|++.. ++..+|.|+|+|..+
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e 72 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEK 72 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHH
Confidence 357899999999999999999999999999999999998742 344789999999854
No 50
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.05 E-value=1e-10 Score=96.82 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=55.8
Q ss_pred CCceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHh
Q 014254 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRL 259 (428)
Q Consensus 183 ~~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i 259 (428)
+..++.+|.||.+.+|.||||||++||+|+++|||+|+|++. +..++.|+|+|+.+. +.+|..+|...+
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~--~~~~~~V~I~G~~e~------v~~A~~~I~~i~ 82 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP--DDPSNQIKITGTKEG------IEKARHEVLLIS 82 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT--TSSCCEEEEEECHHH------HHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC--CCCCCeEEEEECHHH------HHHHHHHHHHHh
Confidence 446899999999999999999999999999999999999752 334689999998543 555665555443
No 51
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=2.1e-10 Score=95.42 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=64.6
Q ss_pred CCceeEEEEEeccccccceeCCCCchHHHHHHHh-CCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhc
Q 014254 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT-GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (428)
Q Consensus 274 ~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~T-GA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~ 352 (428)
..+.++..|.||.++++.|||+||++|++|+++| ||+|.|+.+. +..+.|+|.|+..+|++|+.+|.+++.+.
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g------~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG------SGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT------TTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC------CCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 3566788999999999999999999999999999 9999998431 45678999999999999999999998764
No 52
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=1.1e-09 Score=92.21 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=60.9
Q ss_pred eeEEEEEeccccccceeCCCCchHHHHHHH-hCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhhcC
Q 014254 277 LVNARLVVASNQVGCLLGKGGTIISEMRKV-TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 277 ~vt~~L~VP~s~VG~IIGKgG~~IkeIre~-TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e~~ 353 (428)
.++..|.||..+++.|||++|++|++|+++ ++++|.|++ .++.|+|+|++++|.+|..+|..++++..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~---------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE---------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS---------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC---------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 599999973 35689999999999999999999987643
No 53
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.92 E-value=7.9e-10 Score=91.83 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=54.5
Q ss_pred CCceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHH
Q 014254 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257 (428)
Q Consensus 183 ~~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~ 257 (428)
...++..|.||.+.+|.|||+||++||+|+++|||+|+|++. ....+|.|+|+|..++ +.+|..++..
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~-g~~~~~~V~I~G~~e~------v~~A~~~I~~ 81 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQS-GAPDPNCVTVTGLPEN------VEEAIDHILN 81 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCT-TCSCTTEEEEESCHHH------HHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCC-CCCCCcEEEEEcCHHH------HHHHHHHHHH
Confidence 446889999999999999999999999999999999999763 1235789999998543 4455544444
No 54
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.90 E-value=7.5e-10 Score=93.41 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=52.9
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHH
Q 014254 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257 (428)
Q Consensus 185 evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~ 257 (428)
.++..|.||.+.+|.|||+||++||+|+++|||+|+|++. +...+.|+|+|..+. +.+|..+|..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~--g~~~~~V~I~G~~e~------v~~A~~~I~~ 80 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP--ELQSDIIAITGLAAN------LDRAKAGLLE 80 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT--TTTCCEEEEEECHHH------HHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC--CCCcceEEEEcCHHH------HHHHHHHHHH
Confidence 3788899999999999999999999999999999999863 335579999998543 4555554444
No 55
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.85 E-value=2.2e-09 Score=88.73 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=60.2
Q ss_pred CceeEEEEEeccccccceeCCCCchHHHHHHHhCCe-EEEccCCccccCCCCCcEEEEEe-CHHHHHHHHHHHHHHhhhc
Q 014254 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTS-IRIISDQLLKCISENDRVVQISG-EFSKVKDAVYNVTGRLRDN 352 (428)
Q Consensus 275 ~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~-IqI~~d~~P~~~~s~eRvVtItG-t~~aV~~A~~lI~~~L~e~ 352 (428)
...+...+.||.+.+|.+||+||++|++|++.|||+ |.|.. .+..|+|.| +.+++++|+.+|...-...
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e---------ddG~V~I~g~~~ea~~~A~~~I~~ie~~~ 82 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE---------DTGTFRIYGESADAVKKARGFLEFVEDFI 82 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHSCCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc---------CCCEEEEEECCHHHHHHHHHHHHhhheEE
Confidence 456788999999999999999999999999999998 99952 357899999 7999999999987755443
Q ss_pred C
Q 014254 353 H 353 (428)
Q Consensus 353 ~ 353 (428)
.
T Consensus 83 ~ 83 (91)
T 2cpq_A 83 Q 83 (91)
T ss_dssp C
T ss_pred e
Confidence 3
No 56
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.72 E-value=1.7e-08 Score=84.95 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=58.3
Q ss_pred ccCCCcccccccccCCccccccccchhhhccCCceEEEEEeccccccceeccCchHHHHHHHH-hCCcEEEccCCCCCCc
Q 014254 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSE-AGAFISVGATMPECDE 230 (428)
Q Consensus 152 ti~Gs~~~~~~a~~~~~~e~~~~~~~~~~~~~~evt~rIlVP~~~vG~IIGKgG~tIK~Iqee-TGA~I~Is~~~p~s~E 230 (428)
.+.|..+++..+...+..... ..++.+|.||...++.||||+|++||+|+++ +++.|+|++ .+
T Consensus 4 ~i~G~~~~V~~A~~~i~~~~~-----------~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~ 67 (102)
T 2ctf_A 4 GSSGEPEKLGQALTEVYAKAN-----------SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GE 67 (102)
T ss_dssp CCCCCCCCCCCSCCCCCCCCC-----------CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SS
T ss_pred ccCcCHHHHHHHHHHHHHHhc-----------CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CC
Confidence 456776666666655543221 2378999999999999999999999999998 599999975 56
Q ss_pred eEEEeeCCCCC
Q 014254 231 RLITVTASEGP 241 (428)
Q Consensus 231 RvVtItGs~e~ 241 (428)
+.|+|.|+++.
T Consensus 68 ~~ItI~G~~~~ 78 (102)
T 2ctf_A 68 DKITLEGPTED 78 (102)
T ss_dssp CEEEEEECHHH
T ss_pred CEEEEECCHHH
Confidence 89999998664
No 57
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.69 E-value=1e-08 Score=85.27 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=54.9
Q ss_pred cCCceEEEEEeccccccceeccCchHHHHHHHHh-CCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHH
Q 014254 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEA-GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257 (428)
Q Consensus 182 ~~~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeT-GA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~ 257 (428)
....++..|.||.++++.|||+||++||+|+++| ||+|.|++ .+...+.|+|+|+... +.+|..++..
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~--~g~~~~~V~I~G~~~~------v~~A~~~I~~ 81 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV--EGSGSDTVVIRGPSSD------VEKAKKQLLH 81 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC--TTTTCCEEEEESCHHH------HHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC--CCCCcceEEEEcCHHH------HHHHHHHHHH
Confidence 3456788899999999999999999999999999 99999986 4456778999997542 4445444444
No 58
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.68 E-value=2.3e-08 Score=101.63 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=63.2
Q ss_pred CCceeEEEEEeccccccceeCCCC--chHHHHHHHhCCeEEEccCCcc-ccCCCCCcEEEEEeCHHHHHHHHHHHHHH
Q 014254 274 KGLLVNARLVVASNQVGCLLGKGG--TIISEMRKVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGR 348 (428)
Q Consensus 274 ~~~~vt~~L~VP~s~VG~IIGKgG--~~IkeIre~TGA~IqI~~d~~P-~~~~s~eRvVtItGt~~aV~~A~~lI~~~ 348 (428)
..+.+|.++.||..+++.|||||| ++|++|+++|||+|+|+....+ .........|+|+|.+++|++|..+|.+.
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 467899999999999999999999 9999999999999999833210 11124567899999999999999999884
No 59
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.52 E-value=2.3e-07 Score=81.40 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=61.5
Q ss_pred ceeEEEEEeccc------cccceeCCCCchHHHHHHHhCCeEEEccCC-cc-----------ccCCCCCcEEEEEeC-HH
Q 014254 276 LLVNARLVVASN------QVGCLLGKGGTIISEMRKVTGTSIRIISDQ-LL-----------KCISENDRVVQISGE-FS 336 (428)
Q Consensus 276 ~~vt~~L~VP~s------~VG~IIGKgG~~IkeIre~TGA~IqI~~d~-~P-----------~~~~s~eRvVtItGt-~~ 336 (428)
..++.+|.||.+ ++|.|||++|++||+|+++|||+|.|.+.. .. ......+-.|.|+++ .+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 467889999988 899999999999999999999999997311 00 001123557999995 88
Q ss_pred HHHHHHHHHHHHhhhc
Q 014254 337 KVKDAVYNVTGRLRDN 352 (428)
Q Consensus 337 aV~~A~~lI~~~L~e~ 352 (428)
++++|+.+|..+|.+.
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999763
No 60
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.50 E-value=6.5e-08 Score=85.86 Aligned_cols=66 Identities=24% Similarity=0.329 Sum_probs=52.1
Q ss_pred EEEEeccccccceeccCchHHHHHHHHhCC-cEEEccCCC---CCCc--eEEEeeCCCCCCcCccHHHHHHHHHHHHh
Q 014254 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGA-FISVGATMP---ECDE--RLITVTASEGPESRYSPAQKAVVLVFSRL 259 (428)
Q Consensus 188 ~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA-~I~Is~~~p---~s~E--RvVtItGs~e~~~~~s~a~~Ai~~I~~~i 259 (428)
.++.||.+.+|++|||+|++||.|++.||| +|+|..... ..++ +.|+|+|+.++ +++|..++...+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~------v~~Ak~li~~~l 140 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDS------IANATVLLDYHL 140 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHH------HHHHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHH------HHHHHHHHHHHH
Confidence 789999999999999999999999999997 899975321 1223 35899998775 666766665554
No 61
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=6.4e-07 Score=77.40 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=58.3
Q ss_pred ceeEEEEEeccc-------cccceeCCCCchHHHHHHHhCCeEEEccCCc------cccCCCCCcEEEEEeC-HHHHHHH
Q 014254 276 LLVNARLVVASN-------QVGCLLGKGGTIISEMRKVTGTSIRIISDQL------LKCISENDRVVQISGE-FSKVKDA 341 (428)
Q Consensus 276 ~~vt~~L~VP~s-------~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~------P~~~~s~eRvVtItGt-~~aV~~A 341 (428)
..++.+|.||-+ ++|.|||++|++||+|+++|||+|.|.+... .......+-.|.|++. .+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 457778888865 7899999999999999999999999972210 0000113346888875 9999999
Q ss_pred HHHHHHHhhh
Q 014254 342 VYNVTGRLRD 351 (428)
Q Consensus 342 ~~lI~~~L~e 351 (428)
+.+|.++|.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999874
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.44 E-value=3.7e-08 Score=81.34 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=46.1
Q ss_pred cCCceEEEEEeccccccceeccCchHHHHHHHHhCCc-EEEccCCCCCCceEEEeeCC
Q 014254 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAF-ISVGATMPECDERLITVTAS 238 (428)
Q Consensus 182 ~~~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~-I~Is~~~p~s~ERvVtItGs 238 (428)
....+...|.||.+++|.|||+||++||+|+++||++ |.|.+ ++..|+|.|.
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~ 63 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGE 63 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEES
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEEC
Confidence 3445888899999999999999999999999999998 99973 4588999995
No 63
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.18 E-value=1.1e-06 Score=77.82 Aligned_cols=74 Identities=27% Similarity=0.277 Sum_probs=55.5
Q ss_pred eEEEEEecccc------ccceeCCCCchHHHHHHHhCCeEEEccCCc-------------cccCCC-CCcEEEEEeC-HH
Q 014254 278 VNARLVVASNQ------VGCLLGKGGTIISEMRKVTGTSIRIISDQL-------------LKCISE-NDRVVQISGE-FS 336 (428)
Q Consensus 278 vt~~L~VP~s~------VG~IIGKgG~~IkeIre~TGA~IqI~~d~~-------------P~~~~s-~eRvVtItGt-~~ 336 (428)
++.+|.||-+. +|.|||++|.++|+|+++|||+|.|-+... |+.... .+--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 46788888655 899999999999999999999999984321 110011 2236889995 43
Q ss_pred -----HHHHHHHHHHHHhhh
Q 014254 337 -----KVKDAVYNVTGRLRD 351 (428)
Q Consensus 337 -----aV~~A~~lI~~~L~e 351 (428)
.+++|+.+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 789999999998863
No 64
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.15 E-value=1.7e-06 Score=82.08 Aligned_cols=65 Identities=26% Similarity=0.195 Sum_probs=57.6
Q ss_pred eeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeC-----HHHHHHHHHHHHHHhh
Q 014254 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-----FSKVKDAVYNVTGRLR 350 (428)
Q Consensus 277 ~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt-----~~aV~~A~~lI~~~L~ 350 (428)
.....+.||.+.+|.|||+||++|+.|++.|||+|+|.. .+..|+|.|+ ++++++|..+|..+++
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~---------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS---------ETGEVWITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT---------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc---------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 346689999999999999999999999999999999962 3567899886 6999999999999885
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.06 E-value=4.7e-06 Score=73.03 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=36.7
Q ss_pred CceEEEEEeccc------cccceeccCchHHHHHHHHhCCcEEEcc
Q 014254 184 QEVSFRILCSND------KVGAVIGKGGTIIRALQSEAGAFISVGA 223 (428)
Q Consensus 184 ~evt~rIlVP~~------~vG~IIGKgG~tIK~IqeeTGA~I~Is~ 223 (428)
..++.+|.||.+ .+|.|||++|.+||+|+++|||+|.|..
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~Irg 50 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRG 50 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEE
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecC
Confidence 357889999987 8999999999999999999999999975
No 66
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.01 E-value=6.9e-06 Score=76.35 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=58.8
Q ss_pred EEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEE-----eCHHHHHHHHHHHHHHhhhcC
Q 014254 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQIS-----GEFSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 280 ~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtIt-----Gt~~aV~~A~~lI~~~L~e~~ 353 (428)
.++.||.+.+|.|||++|++++.|++.+|++|++. ..++.|+|. |++.++.+|..+|....+...
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id---------~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~ 75 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD---------TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFP 75 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE---------TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE---------cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999995 346788999 999999999999988777544
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.95 E-value=6e-06 Score=73.18 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=34.4
Q ss_pred eEEEEEecccc------ccceeccCchHHHHHHHHhCCcEEEcc
Q 014254 186 VSFRILCSNDK------VGAVIGKGGTIIRALQSEAGAFISVGA 223 (428)
Q Consensus 186 vt~rIlVP~~~------vG~IIGKgG~tIK~IqeeTGA~I~Is~ 223 (428)
++-||.||.+. +|.|||++|.++|+|+++|||+|.|..
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrG 45 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRG 45 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEES
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEec
Confidence 56788999765 999999999999999999999999975
No 68
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=1.2e-05 Score=69.35 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=34.6
Q ss_pred ceEEEEEeccc-------cccceeccCchHHHHHHHHhCCcEEEcc
Q 014254 185 EVSFRILCSND-------KVGAVIGKGGTIIRALQSEAGAFISVGA 223 (428)
Q Consensus 185 evt~rIlVP~~-------~vG~IIGKgG~tIK~IqeeTGA~I~Is~ 223 (428)
.++-||.||.+ .+|.|||++|.+||+|+++|||+|.|..
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G 56 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRG 56 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEES
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEec
Confidence 46778888864 7999999999999999999999999963
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.93 E-value=1.1e-05 Score=87.17 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=54.6
Q ss_pred ceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeC-HHHHHHHHHHHHHHh
Q 014254 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-FSKVKDAVYNVTGRL 349 (428)
Q Consensus 276 ~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt-~~aV~~A~~lI~~~L 349 (428)
......+.||.+.+|.|||+||++|++|+++|||+|.|. ++-.|.|.|+ .+++++|+.+|..++
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 455778999999999999999999999999999999995 2467999997 678899999887654
No 70
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.75 E-value=1.8e-05 Score=70.38 Aligned_cols=104 Identities=22% Similarity=0.315 Sum_probs=73.0
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhcccc
Q 014254 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSE 265 (428)
Q Consensus 186 vt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~~~ 265 (428)
-.+.|+|+...+|..||++|++|+.|+++.|-+|.|-. =+.++ ...+.+.+......
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~-------------~s~d~----------~~fI~naLsPA~V~ 92 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE-------------YSSDL----------ERIVKNLFPGVKIE 92 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE-------------CCSSH----------HHHHHHHSTTSCEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE-------------cCCCH----------HHHHHHhcCCceEE
Confidence 46778999999999999999999999999999998843 12221 11111111110000
Q ss_pred cccCCCCCCCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEc
Q 014254 266 KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (428)
Q Consensus 266 ~g~~~~~~~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~ 314 (428)
...... .+......+.||.++.+..|||+|.+++-..+.||.+|.|.
T Consensus 93 -~V~i~~-~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 93 -SINVRE-RNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp -EEEEEE-ETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred -EEEEee-cCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 000000 02345778999999999999999999999999999988874
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.52 E-value=0.00019 Score=63.14 Aligned_cols=67 Identities=21% Similarity=0.152 Sum_probs=57.7
Q ss_pred EEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHHHhhh
Q 014254 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (428)
Q Consensus 280 ~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~~L~e 351 (428)
.-+.|.+..++.|+|++|+.|++|+..|+|.|++..- . .++.--|+|.|++..-+.|..+|.....-
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~-~----s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW-G----PERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC-C----TTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc-C----CCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999722 1 13566799999999999999999887653
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.27 E-value=0.00012 Score=80.19 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=12.2
Q ss_pred eeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeC-HHHHHHHHHHHHHHhhhcCCC
Q 014254 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-FSKVKDAVYNVTGRLRDNHFS 355 (428)
Q Consensus 277 ~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt-~~aV~~A~~lI~~~L~e~~~~ 355 (428)
.....+.||.+.+|.|||+||++|++|+++||++|.|. .+-.|.|.+. .+++++|+.+|..++.+....
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG 638 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN----------DDGVVKVSASDGAKIKAAIDWIKSITDEAEVG 638 (726)
T ss_dssp CC-----------------------------------------------------CCSCHHHHHHHHHC-----------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE----------CCceEEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 44567899999999999999999999999999999995 2455788886 788899999999988765544
Q ss_pred Ccc
Q 014254 356 GTL 358 (428)
Q Consensus 356 ~~~ 358 (428)
..|
T Consensus 639 ~v~ 641 (726)
T 4aid_A 639 KIY 641 (726)
T ss_dssp ---
T ss_pred cEE
Confidence 444
No 73
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.09 E-value=0.00021 Score=77.20 Aligned_cols=49 Identities=29% Similarity=0.328 Sum_probs=43.4
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCC
Q 014254 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239 (428)
Q Consensus 185 evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~ 239 (428)
.....|.||.+++|.|||+||++||.|+++|||+|.|.+ +-.|.|.|..
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~ 614 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPT 614 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESS
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCC
Confidence 456779999999999999999999999999999999963 4679999853
No 74
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.98 E-value=0.00099 Score=58.56 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=45.4
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCCC
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~e 240 (428)
.+.|.+.+..++.|||++|+.|+.|+..|++.|+|..-.+ +.+--|+|.|+..
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~ 109 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPP 109 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHH
Confidence 3446899999999999999999999999999999986544 3567799999865
No 75
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.23 E-value=0.005 Score=62.32 Aligned_cols=94 Identities=27% Similarity=0.303 Sum_probs=64.8
Q ss_pred ccccceeccCchHHHHHHHHh-CCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhcccccccCCCCC
Q 014254 195 DKVGAVIGKGGTIIRALQSEA-GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273 (428)
Q Consensus 195 ~~vG~IIGKgG~tIK~IqeeT-GA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~~~~g~~~~~~ 273 (428)
+-+|..||++|++|+.|.++. |-+|.|-. =+.++ ...+.+.+....... ... .
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~-------------~s~dp----------~~fi~nalsPA~V~~-V~~-~- 302 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIID-------------YDDDP----------ARFVANALSPAKVVS-VSV-I- 302 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEE-------------CCSSH----------HHHHHHHTTTSCCSE-EEE-E-
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEE-------------cCCCH----------HHHHHHhcCCcceeE-EEE-E-
Confidence 569999999999999999998 77777642 22222 111222221111000 000 0
Q ss_pred CCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEc
Q 014254 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (428)
Q Consensus 274 ~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~ 314 (428)
......+.+.||.++.+..|||+|.+++-..+.||.+|.|.
T Consensus 303 ~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~ 343 (366)
T 1k0r_A 303 DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIR 343 (366)
T ss_dssp ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEE
T ss_pred cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeee
Confidence 01234688999999999999999999999999999999997
No 76
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.23 E-value=0.0049 Score=59.37 Aligned_cols=94 Identities=24% Similarity=0.259 Sum_probs=62.9
Q ss_pred ccccceeccCchHHHHH-HHHhCCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhcccccccCCCCC
Q 014254 195 DKVGAVIGKGGTIIRAL-QSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273 (428)
Q Consensus 195 ~~vG~IIGKgG~tIK~I-qeeTGA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~~~~g~~~~~~ 273 (428)
+-+|..||++|++|+.| ++-.|-+|.|-. =+.++ ...+...+.......-. . .
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~-------------~s~dp----------~~fi~nalsPA~V~~V~-i-~- 179 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIID-------------YDDDP----------ARFVANALSPAKVVSVS-V-I- 179 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEE-------------CCSSH----------HHHHHHHTTTSCCSEEE-E-E-
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEE-------------ecCCH----------HHHHHhccCCcceEEEE-E-E-
Confidence 46999999999999999 565777777643 22222 11122222111100000 0 0
Q ss_pred CCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEc
Q 014254 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (428)
Q Consensus 274 ~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~ 314 (428)
......+.+.||.++.+.-|||+|.+++--.+.||.+|.|.
T Consensus 180 ~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~ 220 (251)
T 2asb_A 180 DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIR 220 (251)
T ss_dssp ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred cCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecce
Confidence 01124688999999999999999999999999999999997
No 77
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=95.82 E-value=0.0015 Score=71.62 Aligned_cols=49 Identities=31% Similarity=0.519 Sum_probs=3.4
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCC
Q 014254 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239 (428)
Q Consensus 185 evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~ 239 (428)
.....|.||.+++|.|||+||.+||.|+++||++|.|.+ +-.|.|.+..
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d------dG~v~I~~~~ 617 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASD 617 (726)
T ss_dssp CC-------------------------------------------------CCSC
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC------CceEEEEeCC
Confidence 345678999999999999999999999999999999963 4567888853
No 78
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.03 E-value=0.0068 Score=66.44 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=0.0
Q ss_pred eeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeC-HHHHHHHHHHHHHHhhhcC
Q 014254 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-FSKVKDAVYNVTGRLRDNH 353 (428)
Q Consensus 277 ~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt-~~aV~~A~~lI~~~L~e~~ 353 (428)
.....+.||.+.+|.+||+||++|+.|.+.||+.|.|. .+..|.|.+. ...+++|..+|...+.+..
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~----------~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~ 626 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE----------DDGTVKIAATDGEKAKHAIRRIEEITAEIE 626 (723)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEec----------CCccEEEecCCHHHHHHHHHHHHHHhhhhh
Confidence 44567889999999999999999999999999999884 2455777775 5677888888777665443
No 79
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.65 E-value=0.046 Score=54.88 Aligned_cols=94 Identities=32% Similarity=0.382 Sum_probs=63.3
Q ss_pred ccccceeccCchHHHHHHHHh-CCcEEEccCCCCCCceEEEeeCCCCCCcCccHHHHHHHHHHHHhhhcccccccCCCCC
Q 014254 195 DKVGAVIGKGGTIIRALQSEA-GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273 (428)
Q Consensus 195 ~~vG~IIGKgG~tIK~IqeeT-GA~I~Is~~~p~s~ERvVtItGs~e~~~~~s~a~~Ai~~I~~~i~e~~~~~g~~~~~~ 273 (428)
+-+|+.||.+|.+|+.+.++. |-+|.|- .=+.++ ...+...+.......- . ..
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii-------------~~s~d~----------~~fi~nal~Pa~v~~v-~--~~ 298 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVL-------------KWSDDP----------KQLIANALAPATVIEV-E--IL 298 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEE-------------ECCSSH----------HHHHHHHTCSSCCSEE-E--EE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEE-------------ecCCCH----------HHHHHHhcCccEEEEE-E--EE
Confidence 469999999999999999997 5555553 223332 1112222211100000 0 00
Q ss_pred CCceeEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEc
Q 014254 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (428)
Q Consensus 274 ~~~~vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~ 314 (428)
......+.+.||.++.+.-|||+|.+++--.+.||.+|.|.
T Consensus 299 d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 299 DKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp ETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred cCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 01234688999999999999999999999999999999996
No 80
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.17 E-value=0.0043 Score=68.32 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=21.1
Q ss_pred eEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeC-HHHHHHHHHHHHHHh
Q 014254 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-FSKVKDAVYNVTGRL 349 (428)
Q Consensus 278 vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt-~~aV~~A~~lI~~~L 349 (428)
....+.||.+.+|.+||+||++|++|++.||+.|.|. .+..|.|++. ..+.++|...|..+.
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~----------~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE----------DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC------------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEec----------CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 3446789999999999999999999999999999984 2456777776 566667776776654
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=90.07 E-value=0.056 Score=59.22 Aligned_cols=48 Identities=35% Similarity=0.597 Sum_probs=0.0
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCCC
Q 014254 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239 (428)
Q Consensus 186 vt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs~ 239 (428)
....+.||.++++.|||+||.+|+.|.++||+.|.|.+ +..|.|.+..
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~ 607 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATD 607 (723)
T ss_dssp ------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCC
Confidence 45667899999999999999999999999999998863 4567787753
No 82
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=89.26 E-value=0.22 Score=44.07 Aligned_cols=37 Identities=24% Similarity=0.571 Sum_probs=34.7
Q ss_pred eEEEEEeccccccceeCCCCchHHHHHHHhCCeEEEc
Q 014254 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (428)
Q Consensus 278 vt~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~ 314 (428)
-.+.++|+...+|+.||++|++|+.|+++.|-+|.|.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 3678999999999999999999999999999999998
No 83
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=84.87 E-value=0.068 Score=58.85 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=16.6
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHhCCcEEEccCCCCCCceEEEeeCC
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~~~p~s~ERvVtItGs 238 (428)
...|.||.+++|.+||++|.+||.|+++||+.|.|.+ +..|.|++.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~ 644 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAA 644 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC--------------CCCBS
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecC
Confidence 3457899999999999999999999999999999863 456778775
No 84
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=81.23 E-value=0.92 Score=43.56 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=35.2
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCcEEEcc
Q 014254 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA 223 (428)
Q Consensus 186 vt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~ 223 (428)
....+.||.+..++.|||+|.+|+.-.+-||.+|.|..
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 46789999999999999999999999999999999853
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=77.49 E-value=1.4 Score=44.15 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=35.5
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEc
Q 014254 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG 222 (428)
Q Consensus 184 ~evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is 222 (428)
......+.||.+..+..|||+|.+++.-..-||.+|.|.
T Consensus 301 ~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 301 ENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred CCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 345678999999999999999999999999999999885
No 86
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=76.97 E-value=1.5 Score=44.39 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=35.6
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCcEEEcc
Q 014254 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA 223 (428)
Q Consensus 185 evt~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~Is~ 223 (428)
...+.+.||.+..+..|||+|.+++-..+-||.+|.|..
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 446789999999999999999999999999999999953
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=75.66 E-value=1.4 Score=39.13 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=26.2
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHhCCc
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAF 218 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~ 218 (428)
++.|-+-.+..|.+|||.|.+++.||--+...
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~ 65 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNW 65 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHH
Confidence 45566667899999999999999999887443
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=68.68 E-value=2.1 Score=34.82 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=23.5
Q ss_pred EEEEEeccccccceeccCchHHHHHHHH
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSE 214 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~Iqee 214 (428)
.+++.|-...-|.||||+|..|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4567777788999999999999988775
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=53.71 E-value=5 Score=32.57 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=22.4
Q ss_pred EEEEEeccccccceeCCCCchHHHHHH
Q 014254 279 NARLVVASNQVGCLLGKGGTIISEMRK 305 (428)
Q Consensus 279 t~~L~VP~s~VG~IIGKgG~~IkeIre 305 (428)
.+++.|-...-|.|||++|..|.+|+.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 467777778889999999998988764
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=53.16 E-value=6 Score=35.05 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=24.3
Q ss_pred EEEEEeccccccceeCCCCchHHHHHHHh
Q 014254 279 NARLVVASNQVGCLLGKGGTIISEMRKVT 307 (428)
Q Consensus 279 t~~L~VP~s~VG~IIGKgG~~IkeIre~T 307 (428)
++.+.+-.+..|.+|||.|.+++.||-.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 45566778899999999999999998654
No 91
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=44.37 E-value=11 Score=36.18 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=28.6
Q ss_pred ceEEEEEecc-ccccceeccCchHHHHHHH--------HhCCcEEEc
Q 014254 185 EVSFRILCSN-DKVGAVIGKGGTIIRALQS--------EAGAFISVG 222 (428)
Q Consensus 185 evt~rIlVP~-~~vG~IIGKgG~tIK~Iqe--------eTGA~I~Is 222 (428)
.+.-.|+|.. ++-|.||||+|+.||+|.. -.|++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 3556677775 5789999999999997754 467777664
No 92
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=42.77 E-value=9.9 Score=36.44 Aligned_cols=39 Identities=21% Similarity=0.442 Sum_probs=30.1
Q ss_pred ceeEEEEEecc-ccccceeCCCCchHHHHH--------HHhCCeEEEc
Q 014254 276 LLVNARLVVAS-NQVGCLLGKGGTIISEMR--------KVTGTSIRII 314 (428)
Q Consensus 276 ~~vt~~L~VP~-s~VG~IIGKgG~~IkeIr--------e~TGA~IqI~ 314 (428)
..+...++|.. ++-|.||||+|+.||+|. +..|++|.+.
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 35667788885 477999999999999875 3567777764
No 93
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=42.47 E-value=8.2 Score=36.36 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=27.2
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHhCCcEE
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~IqeeTGA~I~ 220 (428)
.+.|-+.....|.+|||.|.+++.||.-+...++
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 3445566778999999999999999998875543
No 94
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.27 E-value=11 Score=35.11 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=22.3
Q ss_pred EEEEeccccccceeccCchHHHHHHHH
Q 014254 188 FRILCSNDKVGAVIGKGGTIIRALQSE 214 (428)
Q Consensus 188 ~rIlVP~~~vG~IIGKgG~tIK~Iqee 214 (428)
+++.|-...-|.|||++|+.|++|+..
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 456666778899999999999998765
No 95
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=38.01 E-value=11 Score=35.78 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=24.0
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHh
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~IqeeT 215 (428)
.+++.|-...-|.|||++|..|++|+...
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 35677777889999999999999887764
No 96
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=37.09 E-value=54 Score=30.46 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=43.3
Q ss_pred EEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeCHHHHHHHHHHHHH
Q 014254 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347 (428)
Q Consensus 281 ~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt~~aV~~A~~lI~~ 347 (428)
-+.++...+.+++|+++..++.|.+.+++.|-+= .+-.|=|.++......+...|..
T Consensus 139 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG----------~NG~IWi~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG----------QNGLIWVNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC----------TTSEEEEESCHHHHHHHHHHHHH
T ss_pred EEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE----------CCcEEEEeCCchhHHHHHHHHHH
Confidence 4578899999999999999999999999999882 34456688887654444444433
No 97
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=36.00 E-value=15 Score=34.94 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=24.4
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHh
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~IqeeT 215 (428)
.+++.|-...-|.||||+|..|++|+...
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 45677777889999999999999988763
No 98
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=34.44 E-value=12 Score=35.38 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=24.4
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHh
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~IqeeT 215 (428)
.+++.|-...-|.|||++|+.|++|+.+.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 46677888899999999999999987763
No 99
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=31.26 E-value=12 Score=34.82 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=21.5
Q ss_pred EEEEeccccccceeccCchHHHHHHHH
Q 014254 188 FRILCSNDKVGAVIGKGGTIIRALQSE 214 (428)
Q Consensus 188 ~rIlVP~~~vG~IIGKgG~tIK~Iqee 214 (428)
+++.|-...-|.|||++|+.|++|+.+
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 345566678899999999999988765
No 100
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.38 E-value=15 Score=35.08 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.6
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHh
Q 014254 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (428)
Q Consensus 187 t~rIlVP~~~vG~IIGKgG~tIK~IqeeT 215 (428)
.+++.|-...-|.|||++|+.|++|+...
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 45677777889999999999999988864
No 101
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=29.11 E-value=23 Score=33.64 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=22.6
Q ss_pred EEEEEeccccccceeCCCCchHHHHHH
Q 014254 279 NARLVVASNQVGCLLGKGGTIISEMRK 305 (428)
Q Consensus 279 t~~L~VP~s~VG~IIGKgG~~IkeIre 305 (428)
.+++.|-...-|.|||++|..|++|+.
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~ 71 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTL 71 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 467777788889999999999988764
No 102
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=28.29 E-value=14 Score=34.98 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=21.7
Q ss_pred EEEEeccccccceeccCchHHHHHHHH
Q 014254 188 FRILCSNDKVGAVIGKGGTIIRALQSE 214 (428)
Q Consensus 188 ~rIlVP~~~vG~IIGKgG~tIK~Iqee 214 (428)
++|.|-...-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 445666678899999999999988765
No 103
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=27.43 E-value=20 Score=33.96 Aligned_cols=26 Identities=42% Similarity=0.668 Sum_probs=21.1
Q ss_pred EEEeccccccceeccCchHHHHHHHH
Q 014254 189 RILCSNDKVGAVIGKGGTIIRALQSE 214 (428)
Q Consensus 189 rIlVP~~~vG~IIGKgG~tIK~Iqee 214 (428)
++.|-...-|.|||++|+.|++|+.+
T Consensus 65 ~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 65 AVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEeCCCcceecCCchHHHHHHHH
Confidence 34555677899999999999988876
No 104
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=26.45 E-value=15 Score=35.14 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=25.4
Q ss_pred EEEEec-cccccceeccCchHHHHHHH--------HhCCcEEEc
Q 014254 188 FRILCS-NDKVGAVIGKGGTIIRALQS--------EAGAFISVG 222 (428)
Q Consensus 188 ~rIlVP-~~~vG~IIGKgG~tIK~Iqe--------eTGA~I~Is 222 (428)
..|.|. .++.+.||||+|+.||+|.. -.|++|.+.
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 345565 46789999999999997654 466766663
No 105
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.28 E-value=23 Score=32.98 Aligned_cols=36 Identities=25% Similarity=0.564 Sum_probs=26.4
Q ss_pred EEEEEeccccccceeCCCCchHHHHH----HHhC---CeEEEc
Q 014254 279 NARLVVASNQVGCLLGKGGTIISEMR----KVTG---TSIRII 314 (428)
Q Consensus 279 t~~L~VP~s~VG~IIGKgG~~IkeIr----e~TG---A~IqI~ 314 (428)
.+++.|-...-|.|||++|+.|++|+ +.+| .+|.+.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 35667777788999999999998875 4566 345554
No 106
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=26.13 E-value=20 Score=33.66 Aligned_cols=31 Identities=16% Similarity=0.434 Sum_probs=25.0
Q ss_pred EEEEEeccccccceeCCCCchHHHHHHHhCC
Q 014254 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGT 309 (428)
Q Consensus 279 t~~L~VP~s~VG~IIGKgG~~IkeIre~TGA 309 (428)
.+.+.|..+..|.+|||.|.+++.||..+..
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~ 123 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSL 123 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHH
Confidence 3455566778999999999999999987653
No 107
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=25.71 E-value=29 Score=33.05 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=23.6
Q ss_pred eEEEEEeccccccceeCCCCchHHHHHH
Q 014254 278 VNARLVVASNQVGCLLGKGGTIISEMRK 305 (428)
Q Consensus 278 vt~~L~VP~s~VG~IIGKgG~~IkeIre 305 (428)
..+++.|-...-|.|||++|+.|++|+.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~ 74 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQ 74 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHH
Confidence 3567788888889999999999998875
No 108
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.17 E-value=17 Score=33.94 Aligned_cols=28 Identities=7% Similarity=0.052 Sum_probs=22.0
Q ss_pred EEEEeccccccceeccCchHHHHHHHHh
Q 014254 188 FRILCSNDKVGAVIGKGGTIIRALQSEA 215 (428)
Q Consensus 188 ~rIlVP~~~vG~IIGKgG~tIK~IqeeT 215 (428)
+++.|-...-|.||||+|+.|++|+++-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 3445566778999999999999988764
No 109
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.41 E-value=24 Score=33.21 Aligned_cols=28 Identities=18% Similarity=0.456 Sum_probs=23.5
Q ss_pred eEEEEEeccccccceeCCCCchHHHHHH
Q 014254 278 VNARLVVASNQVGCLLGKGGTIISEMRK 305 (428)
Q Consensus 278 vt~~L~VP~s~VG~IIGKgG~~IkeIre 305 (428)
..+++.|-...-|.|||++|+.|++|+.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~ 71 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTS 71 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 3567788888889999999999988764
No 110
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=24.28 E-value=1.4e+02 Score=27.51 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=43.8
Q ss_pred EEEEeccccccceeCCCCchHHHHHHHhCCeEEEccCCccccCCCCCcEEEEEeC-HHHHHHHHHHHHHH
Q 014254 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-FSKVKDAVYNVTGR 348 (428)
Q Consensus 280 ~~L~VP~s~VG~IIGKgG~~IkeIre~TGA~IqI~~d~~P~~~~s~eRvVtItGt-~~aV~~A~~lI~~~ 348 (428)
.-+.++...+.+++|++|..+..|.+.++++|-+= .+-.|-|.+. ...+..+...|...
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG----------~NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA----------RNGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE----------TTTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe----------CCCEEEEecCCHHHHHHHHHHHHHH
Confidence 34578899999999999999999998999999882 2456778864 54555444444443
No 111
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=23.19 E-value=15 Score=35.25 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=27.7
Q ss_pred eEEEEEec-cccccceeCCCCchHHHHH--------HHhCCeEEEc
Q 014254 278 VNARLVVA-SNQVGCLLGKGGTIISEMR--------KVTGTSIRII 314 (428)
Q Consensus 278 vt~~L~VP-~s~VG~IIGKgG~~IkeIr--------e~TGA~IqI~ 314 (428)
+...+.|. .++.+.||||+|+.||+|. +..|++|.+.
T Consensus 230 i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 230 IKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 44456665 5677999999999998875 4667777764
No 112
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=20.26 E-value=25 Score=32.63 Aligned_cols=35 Identities=23% Similarity=0.529 Sum_probs=26.7
Q ss_pred EEEEeccccccceeCCCCchHHHHH----HHhCCeEEEc
Q 014254 280 ARLVVASNQVGCLLGKGGTIISEMR----KVTGTSIRII 314 (428)
Q Consensus 280 ~~L~VP~s~VG~IIGKgG~~IkeIr----e~TGA~IqI~ 314 (428)
+++.|-...-|.|||++|+.|++|+ +.++.+++|.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I~ 101 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN 101 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCCB
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 4556666777999999999998876 4677776665
Done!