Query 014255
Match_columns 428
No_of_seqs 225 out of 1101
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:21:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1464 COP9 signalosome, subu 100.0 4.6E-78 1E-82 543.7 35.4 410 13-424 24-434 (440)
2 KOG1463 26S proteasome regulat 100.0 5.1E-63 1.1E-67 457.4 31.5 388 21-420 8-410 (411)
3 COG5159 RPN6 26S proteasome re 100.0 6.4E-54 1.4E-58 389.0 30.6 388 22-421 8-409 (421)
4 KOG1498 26S proteasome regulat 100.0 3E-42 6.5E-47 325.2 27.5 384 19-424 15-419 (439)
5 COG5071 RPN5 26S proteasome re 100.0 8E-35 1.7E-39 265.9 26.5 383 20-424 16-419 (439)
6 KOG0687 26S proteasome regulat 100.0 6.6E-29 1.4E-33 229.7 27.7 276 137-423 105-389 (393)
7 KOG2908 26S proteasome regulat 100.0 5.5E-26 1.2E-30 211.7 31.8 304 68-423 52-369 (380)
8 KOG0686 COP9 signalosome, subu 100.0 1.5E-26 3.2E-31 220.0 25.6 266 137-415 151-425 (466)
9 COG5187 RPN7 26S proteasome re 99.9 1.3E-24 2.9E-29 198.4 30.2 348 54-420 42-400 (412)
10 KOG1497 COP9 signalosome, subu 99.9 7.9E-24 1.7E-28 195.4 28.2 335 72-423 39-385 (399)
11 PF01399 PCI: PCI domain; Int 99.8 8.7E-19 1.9E-23 142.8 12.4 105 296-400 1-105 (105)
12 KOG2581 26S proteasome regulat 99.8 4E-17 8.7E-22 155.7 24.6 247 137-400 170-423 (493)
13 KOG2758 Translation initiation 99.8 1.1E-16 2.4E-21 148.4 24.1 260 137-412 130-404 (432)
14 smart00088 PINT motif in prote 99.6 1.4E-14 2.9E-19 114.3 9.2 86 332-419 1-86 (88)
15 smart00753 PAM PCI/PINT associ 99.6 1.4E-14 2.9E-19 114.3 9.2 86 332-419 1-86 (88)
16 KOG2582 COP9 signalosome, subu 99.5 3.4E-11 7.3E-16 114.2 27.0 272 117-401 77-361 (422)
17 PF10602 RPN7: 26S proteasome 99.3 7.4E-11 1.6E-15 105.2 16.5 129 137-274 37-168 (177)
18 KOG2753 Uncharacterized conser 99.1 3E-08 6.5E-13 93.2 23.4 183 240-426 183-373 (378)
19 COG5600 Transcription-associat 99.0 1.6E-07 3.4E-12 90.0 23.7 249 149-403 143-406 (413)
20 KOG1076 Translation initiation 98.9 1.8E-06 3.9E-11 88.4 29.6 232 194-427 498-789 (843)
21 PF14938 SNAP: Soluble NSF att 98.9 9.8E-07 2.1E-11 84.9 23.7 238 51-331 32-271 (282)
22 KOG2688 Transcription-associat 98.7 1E-06 2.2E-11 86.3 17.9 243 152-403 132-387 (394)
23 PF14938 SNAP: Soluble NSF att 98.6 1.8E-05 3.8E-10 76.2 21.8 176 30-213 49-227 (282)
24 PRK11788 tetratricopeptide rep 98.5 0.00023 5E-09 71.2 28.8 196 28-250 47-242 (389)
25 KOG1840 Kinesin light chain [C 98.5 1.5E-05 3.1E-10 81.9 20.1 213 29-249 254-477 (508)
26 PRK11788 tetratricopeptide rep 98.4 7.7E-05 1.7E-09 74.7 22.8 196 29-250 82-277 (389)
27 COG2956 Predicted N-acetylgluc 98.2 0.00057 1.2E-08 65.0 21.3 194 28-249 47-241 (389)
28 TIGR02521 type_IV_pilW type IV 98.2 0.00044 9.5E-09 62.7 20.5 155 29-211 44-198 (234)
29 KOG1840 Kinesin light chain [C 98.1 0.0013 2.7E-08 67.8 24.8 217 29-252 212-439 (508)
30 TIGR00990 3a0801s09 mitochondr 98.1 0.00031 6.7E-09 75.2 20.8 189 30-251 308-496 (615)
31 TIGR00990 3a0801s09 mitochondr 98.1 0.00053 1.1E-08 73.4 21.9 191 29-250 344-536 (615)
32 PRK10866 outer membrane biogen 98.1 0.00048 1.1E-08 64.7 19.0 179 16-205 31-235 (243)
33 TIGR03302 OM_YfiO outer membra 98.0 0.001 2.2E-08 61.8 19.5 173 20-208 36-229 (235)
34 KOG2072 Translation initiation 98.0 0.037 8.1E-07 58.6 33.0 220 180-399 230-492 (988)
35 KOG2003 TPR repeat-containing 97.9 0.0012 2.6E-08 65.3 19.2 201 27-268 501-701 (840)
36 TIGR02917 PEP_TPR_lipo putativ 97.9 0.0012 2.5E-08 72.6 21.7 165 20-211 25-222 (899)
37 PF13525 YfiO: Outer membrane 97.9 0.0017 3.8E-08 59.2 19.3 174 17-202 5-198 (203)
38 COG2956 Predicted N-acetylgluc 97.9 0.00078 1.7E-08 64.1 16.9 168 21-212 111-279 (389)
39 PF12569 NARP1: NMDA receptor- 97.9 0.012 2.6E-07 61.2 27.3 216 20-248 7-254 (517)
40 TIGR02917 PEP_TPR_lipo putativ 97.8 0.0057 1.2E-07 67.2 25.0 52 29-84 478-529 (899)
41 PF09976 TPR_21: Tetratricopep 97.8 0.00095 2.1E-08 57.4 14.5 122 28-208 23-144 (145)
42 PRK10747 putative protoheme IX 97.8 0.0047 1E-07 62.4 21.2 188 29-251 166-357 (398)
43 KOG2003 TPR repeat-containing 97.8 0.0046 1E-07 61.2 19.9 258 27-327 430-693 (840)
44 PF09976 TPR_21: Tetratricopep 97.7 0.002 4.4E-08 55.3 15.8 94 139-248 51-144 (145)
45 KOG4626 O-linked N-acetylgluco 97.7 0.0051 1.1E-07 63.3 20.2 186 29-250 299-484 (966)
46 PRK11447 cellulose synthase su 97.7 0.004 8.6E-08 71.6 21.4 198 29-252 474-701 (1157)
47 PF12569 NARP1: NMDA receptor- 97.6 0.014 3.1E-07 60.7 22.7 213 29-255 51-338 (517)
48 TIGR02521 type_IV_pilW type IV 97.6 0.012 2.5E-07 53.3 19.3 172 50-251 27-198 (234)
49 TIGR00540 hemY_coli hemY prote 97.6 0.0078 1.7E-07 61.1 19.8 194 29-250 166-365 (409)
50 PRK10049 pgaA outer membrane p 97.6 0.0088 1.9E-07 65.7 21.0 199 28-254 249-459 (765)
51 PRK11447 cellulose synthase su 97.5 0.0063 1.4E-07 70.0 20.7 189 28-247 363-554 (1157)
52 PF10075 PCI_Csn8: COP9 signal 97.5 0.00021 4.5E-09 61.5 6.4 84 292-379 38-121 (143)
53 KOG2002 TPR-containing nuclear 97.5 0.014 3.1E-07 62.8 20.5 198 32-253 146-373 (1018)
54 PF10255 Paf67: RNA polymerase 97.5 0.0028 6E-08 63.3 14.0 180 188-377 128-343 (404)
55 KOG4626 O-linked N-acetylgluco 97.4 0.0039 8.5E-08 64.1 14.5 186 29-250 231-416 (966)
56 PLN03081 pentatricopeptide (PP 97.2 0.14 3.1E-06 55.6 25.6 181 30-250 273-454 (697)
57 TIGR03302 OM_YfiO outer membra 97.2 0.081 1.8E-06 48.9 20.7 190 51-251 30-232 (235)
58 PRK15174 Vi polysaccharide exp 97.2 0.057 1.2E-06 58.3 22.1 91 140-248 250-344 (656)
59 KOG1173 Anaphase-promoting com 97.2 0.026 5.5E-07 57.7 17.7 175 17-212 317-519 (611)
60 PRK15174 Vi polysaccharide exp 97.2 0.067 1.5E-06 57.7 22.5 98 137-252 285-382 (656)
61 PLN03218 maturation of RBCL 1; 97.2 0.18 4E-06 57.1 25.9 51 29-82 485-535 (1060)
62 COG4105 ComL DNA uptake lipopr 97.1 0.094 2E-06 48.9 19.4 179 14-204 31-226 (254)
63 PF13525 YfiO: Outer membrane 97.1 0.12 2.7E-06 46.9 19.7 168 51-272 2-189 (203)
64 PRK09782 bacteriophage N4 rece 97.1 0.073 1.6E-06 59.8 21.4 96 138-251 611-706 (987)
65 KOG1585 Protein required for f 97.0 0.098 2.1E-06 48.3 18.1 180 18-211 38-219 (308)
66 PRK12370 invasion protein regu 97.0 0.033 7.2E-07 58.9 17.1 151 29-248 317-467 (553)
67 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.022 4.8E-07 46.1 12.4 104 138-253 4-107 (119)
68 PF13429 TPR_15: Tetratricopep 96.9 0.02 4.3E-07 54.8 13.8 51 29-83 21-73 (280)
69 PRK11189 lipoprotein NlpI; Pro 96.9 0.35 7.6E-06 46.7 22.1 123 31-167 41-163 (296)
70 PF13429 TPR_15: Tetratricopep 96.8 0.027 5.9E-07 53.8 13.6 188 29-252 57-244 (280)
71 PLN03218 maturation of RBCL 1; 96.7 0.24 5.1E-06 56.2 21.7 96 139-250 687-782 (1060)
72 PRK02603 photosystem I assembl 96.7 0.066 1.4E-06 47.3 14.2 108 138-254 37-145 (172)
73 cd05804 StaR_like StaR_like; a 96.7 0.22 4.7E-06 49.0 19.4 194 30-249 20-213 (355)
74 PF13424 TPR_12: Tetratricopep 96.7 0.0085 1.8E-07 45.3 7.2 70 137-211 6-75 (78)
75 KOG1586 Protein required for f 96.7 0.52 1.1E-05 43.4 20.0 240 31-337 29-276 (288)
76 KOG1126 DNA-binding cell divis 96.7 0.36 7.7E-06 50.4 20.8 183 31-250 334-517 (638)
77 PRK04841 transcriptional regul 96.6 0.54 1.2E-05 52.6 24.3 215 29-251 422-641 (903)
78 PRK09782 bacteriophage N4 rece 96.6 0.21 4.5E-06 56.2 20.1 191 28-248 521-737 (987)
79 PRK10803 tol-pal system protei 96.6 0.027 5.8E-07 53.5 11.4 106 17-168 142-249 (263)
80 PRK10370 formate-dependent nit 96.6 0.073 1.6E-06 48.3 13.9 52 29-84 52-103 (198)
81 KOG1130 Predicted G-alpha GTPa 96.6 0.099 2.1E-06 51.7 15.2 215 28-250 29-303 (639)
82 PF12895 Apc3: Anaphase-promot 96.6 0.016 3.4E-07 44.6 8.1 82 29-161 2-83 (84)
83 PRK04841 transcriptional regul 96.5 0.63 1.4E-05 52.1 24.0 225 29-256 504-765 (903)
84 KOG1126 DNA-binding cell divis 96.5 0.038 8.2E-07 57.4 12.7 148 32-209 471-618 (638)
85 PRK10049 pgaA outer membrane p 96.5 0.7 1.5E-05 50.9 23.5 203 33-252 213-423 (765)
86 cd00189 TPR Tetratricopeptide 96.5 0.042 9E-07 41.1 10.2 94 139-250 3-96 (100)
87 CHL00033 ycf3 photosystem I as 96.4 0.07 1.5E-06 46.8 12.5 108 138-254 37-145 (168)
88 KOG3060 Uncharacterized conser 96.4 0.83 1.8E-05 42.6 21.5 195 25-251 21-220 (289)
89 PF03399 SAC3_GANP: SAC3/GANP/ 96.4 0.025 5.5E-07 51.4 9.7 105 257-367 95-204 (204)
90 PF13432 TPR_16: Tetratricopep 96.3 0.011 2.3E-07 43.0 5.6 52 29-84 10-61 (65)
91 KOG2002 TPR-containing nuclear 96.3 0.64 1.4E-05 50.7 20.7 210 14-249 378-591 (1018)
92 PRK10370 formate-dependent nit 96.3 0.43 9.3E-06 43.3 17.3 114 140-273 77-193 (198)
93 PF14559 TPR_19: Tetratricopep 96.3 0.0086 1.9E-07 43.8 5.1 53 28-84 3-55 (68)
94 PRK11189 lipoprotein NlpI; Pro 96.3 0.22 4.8E-06 48.1 16.4 188 29-252 77-266 (296)
95 COG3071 HemY Uncharacterized e 96.2 0.76 1.6E-05 45.3 19.1 186 29-249 166-355 (400)
96 KOG1155 Anaphase-promoting com 96.2 1.7 3.6E-05 44.0 22.1 200 29-251 275-536 (559)
97 PRK10866 outer membrane biogen 96.2 0.88 1.9E-05 42.7 19.2 167 52-272 30-223 (243)
98 cd05804 StaR_like StaR_like; a 96.2 1.5 3.2E-05 43.1 22.0 79 187-265 269-351 (355)
99 PLN03081 pentatricopeptide (PP 96.2 0.15 3.3E-06 55.4 15.9 87 141-247 467-553 (697)
100 PF13424 TPR_12: Tetratricopep 96.1 0.065 1.4E-06 40.3 9.3 72 181-252 4-76 (78)
101 PRK12370 invasion protein regu 96.1 0.37 8.1E-06 50.9 18.1 120 29-165 351-470 (553)
102 TIGR02552 LcrH_SycD type III s 96.0 0.25 5.4E-06 41.1 13.5 111 38-212 5-115 (135)
103 KOG2076 RNA polymerase III tra 96.0 0.59 1.3E-05 50.5 18.6 47 28-78 151-197 (895)
104 KOG1125 TPR repeat-containing 96.0 0.56 1.2E-05 48.3 17.7 95 137-250 431-526 (579)
105 PF13432 TPR_16: Tetratricopep 96.0 0.05 1.1E-06 39.4 7.8 60 140-211 1-60 (65)
106 TIGR02795 tol_pal_ybgF tol-pal 95.9 0.22 4.8E-06 40.0 12.4 103 55-211 3-105 (119)
107 KOG1861 Leucine permease trans 95.9 0.057 1.2E-06 54.0 9.9 141 222-369 348-492 (540)
108 KOG1155 Anaphase-promoting com 95.9 0.37 8E-06 48.5 15.4 156 31-209 379-534 (559)
109 KOG1129 TPR repeat-containing 95.9 0.21 4.6E-06 48.1 13.2 164 57-253 226-389 (478)
110 PLN03077 Protein ECB2; Provisi 95.9 4 8.7E-05 45.6 27.3 107 141-275 529-637 (857)
111 COG3063 PilF Tfp pilus assembl 95.9 0.13 2.9E-06 47.1 11.4 116 137-273 36-151 (250)
112 KOG2076 RNA polymerase III tra 95.9 1.2 2.7E-05 48.1 20.2 202 28-251 219-478 (895)
113 KOG1156 N-terminal acetyltrans 95.9 1.9 4.2E-05 45.2 20.9 124 137-272 372-535 (700)
114 TIGR02552 LcrH_SycD type III s 95.8 0.14 3E-06 42.8 10.9 96 139-252 20-115 (135)
115 PRK14574 hmsH outer membrane p 95.8 1.5 3.2E-05 48.6 21.3 164 56-252 36-199 (822)
116 KOG1941 Acetylcholine receptor 95.8 1.1 2.5E-05 43.8 17.7 225 30-257 20-281 (518)
117 KOG2300 Uncharacterized conser 95.7 1.3 2.8E-05 44.9 18.5 178 56-243 325-506 (629)
118 TIGR00540 hemY_coli hemY prote 95.7 0.42 9E-06 48.5 15.9 65 140-215 339-403 (409)
119 KOG2908 26S proteasome regulat 95.7 0.66 1.4E-05 44.9 15.8 90 145-240 84-175 (380)
120 PRK15363 pathogenicity island 95.7 0.45 9.7E-06 41.3 13.4 96 139-252 38-133 (157)
121 PF09756 DDRGK: DDRGK domain; 95.5 0.025 5.5E-07 50.5 5.5 58 344-401 102-159 (188)
122 PF12895 Apc3: Anaphase-promot 95.5 0.16 3.6E-06 38.8 9.5 84 148-248 1-84 (84)
123 PF13414 TPR_11: TPR repeat; P 95.5 0.029 6.4E-07 41.1 5.0 51 29-83 16-67 (69)
124 PF13414 TPR_11: TPR repeat; P 95.4 0.12 2.7E-06 37.6 8.2 61 139-211 6-67 (69)
125 PF09012 FeoC: FeoC like trans 95.3 0.034 7.3E-07 41.3 4.7 49 345-393 4-52 (69)
126 PRK15359 type III secretion sy 95.3 0.47 1E-05 40.6 12.6 92 141-250 29-120 (144)
127 KOG3250 COP9 signalosome, subu 95.2 0.052 1.1E-06 48.8 6.1 121 292-422 56-184 (258)
128 PLN03088 SGT1, suppressor of 95.2 0.2 4.3E-06 49.9 11.1 90 26-167 12-101 (356)
129 COG3063 PilF Tfp pilus assembl 95.2 2.1 4.7E-05 39.4 16.5 168 54-251 35-202 (250)
130 KOG1586 Protein required for f 95.1 2.7 5.9E-05 38.9 20.6 202 6-218 23-231 (288)
131 PRK10747 putative protoheme IX 95.1 2.7 5.8E-05 42.4 19.4 161 27-210 129-291 (398)
132 CHL00033 ycf3 photosystem I as 95.0 0.74 1.6E-05 40.2 13.1 130 29-210 12-141 (168)
133 KOG3060 Uncharacterized conser 95.0 2.1 4.6E-05 40.0 16.1 153 32-213 68-222 (289)
134 PRK14574 hmsH outer membrane p 94.9 5.1 0.00011 44.4 21.9 201 32-248 267-476 (822)
135 KOG0547 Translocase of outer m 94.9 2.4 5.3E-05 43.1 17.3 101 137-250 463-565 (606)
136 cd00189 TPR Tetratricopeptide 94.8 0.29 6.2E-06 36.3 9.0 85 29-165 13-97 (100)
137 PF13512 TPR_18: Tetratricopep 94.8 0.14 3.1E-06 43.5 7.5 71 15-87 8-79 (142)
138 PRK15359 type III secretion sy 94.7 0.46 1E-05 40.6 10.8 110 37-167 14-123 (144)
139 KOG0495 HAT repeat protein [RN 94.7 4 8.7E-05 43.1 18.9 189 29-254 597-785 (913)
140 KOG1156 N-terminal acetyltrans 94.7 6.8 0.00015 41.3 23.9 98 141-250 148-247 (700)
141 PF10345 Cohesin_load: Cohesin 94.7 1.5 3.3E-05 46.9 17.0 138 115-259 33-176 (608)
142 PLN03088 SGT1, suppressor of 94.6 0.37 8E-06 48.0 11.3 93 141-251 7-99 (356)
143 PLN03077 Protein ECB2; Provisi 94.6 1.8 4E-05 48.3 18.0 114 30-162 538-651 (857)
144 PF13371 TPR_9: Tetratricopept 94.5 0.16 3.4E-06 37.5 6.5 53 28-84 7-59 (73)
145 COG4783 Putative Zn-dependent 94.5 1.5 3.2E-05 44.5 15.0 53 141-205 379-431 (484)
146 PF04190 DUF410: Protein of un 94.4 4.6 0.0001 38.2 21.0 46 292-337 189-234 (260)
147 PF10602 RPN7: 26S proteasome 94.4 1.2 2.5E-05 39.7 13.0 111 51-166 33-143 (177)
148 KOG2376 Signal recognition par 94.4 7.5 0.00016 40.5 20.5 152 30-209 93-251 (652)
149 PF13176 TPR_7: Tetratricopept 94.2 0.13 2.8E-06 32.7 4.7 29 56-84 1-29 (36)
150 PRK15179 Vi polysaccharide bio 94.1 2.7 5.9E-05 45.6 17.4 151 32-212 68-218 (694)
151 PRK14720 transcript cleavage f 93.9 3.2 6.9E-05 46.0 17.4 125 30-167 130-254 (906)
152 KOG0495 HAT repeat protein [RN 93.8 3.6 7.8E-05 43.4 16.4 192 29-256 631-851 (913)
153 KOG0548 Molecular co-chaperone 93.8 5 0.00011 41.3 17.1 90 143-250 365-454 (539)
154 KOG2300 Uncharacterized conser 93.7 6.2 0.00013 40.3 17.4 152 92-257 5-162 (629)
155 KOG1585 Protein required for f 93.5 6.5 0.00014 36.7 20.0 26 294-319 227-252 (308)
156 KOG2376 Signal recognition par 93.5 6 0.00013 41.2 17.3 131 32-167 357-489 (652)
157 KOG0624 dsRNA-activated protei 93.4 3 6.6E-05 40.7 14.1 173 18-212 39-253 (504)
158 KOG1130 Predicted G-alpha GTPa 93.2 0.9 1.9E-05 45.2 10.6 178 32-217 171-350 (639)
159 KOG3081 Vesicle coat complex C 93.1 2.4 5.2E-05 39.9 12.7 43 230-277 215-257 (299)
160 COG5010 TadD Flp pilus assembl 93.0 2.2 4.7E-05 39.9 12.3 111 142-275 106-216 (257)
161 PF03704 BTAD: Bacterial trans 92.8 5.4 0.00012 33.7 14.2 122 53-212 5-126 (146)
162 PRK10803 tol-pal system protei 92.7 2.6 5.7E-05 40.0 13.0 97 145-254 152-249 (263)
163 COG1729 Uncharacterized protei 92.7 0.7 1.5E-05 43.5 8.8 104 20-169 144-248 (262)
164 PF04733 Coatomer_E: Coatomer 92.6 5.6 0.00012 38.4 15.3 43 28-74 13-55 (290)
165 KOG1129 TPR repeat-containing 92.6 3.6 7.9E-05 39.9 13.4 160 59-248 295-455 (478)
166 PF14559 TPR_19: Tetratricopep 92.5 0.4 8.8E-06 34.7 5.8 53 146-210 1-53 (68)
167 PRK15179 Vi polysaccharide bio 92.3 3.2 7E-05 45.0 14.4 120 29-166 99-218 (694)
168 KOG0547 Translocase of outer m 92.2 15 0.00033 37.6 21.2 214 33-273 303-547 (606)
169 PF13371 TPR_9: Tetratricopept 92.2 0.63 1.4E-05 34.2 6.6 59 142-212 1-59 (73)
170 COG3355 Predicted transcriptio 92.2 1.6 3.5E-05 36.3 9.3 76 349-424 36-117 (126)
171 KOG0550 Molecular chaperone (D 92.1 6.1 0.00013 39.5 14.6 197 33-252 149-351 (486)
172 KOG0543 FKBP-type peptidyl-pro 91.8 1.8 4E-05 42.9 10.8 105 141-251 213-320 (397)
173 COG2976 Uncharacterized protei 91.8 5.9 0.00013 35.6 12.9 62 137-211 127-188 (207)
174 PRK02603 photosystem I assembl 91.7 6.6 0.00014 34.3 13.6 69 53-166 34-102 (172)
175 COG4105 ComL DNA uptake lipopr 91.6 12 0.00026 35.1 16.3 151 54-256 34-201 (254)
176 PF12688 TPR_5: Tetratrico pep 91.6 5.3 0.00011 33.1 11.9 101 138-250 3-103 (120)
177 PRK15431 ferrous iron transpor 91.6 0.42 9.2E-06 36.0 4.8 52 345-396 6-57 (78)
178 COG2976 Uncharacterized protei 91.6 6.2 0.00013 35.5 12.8 98 139-252 92-189 (207)
179 PF09295 ChAPs: ChAPs (Chs5p-A 91.5 4.7 0.0001 40.6 13.8 85 140-242 204-288 (395)
180 KOG1941 Acetylcholine receptor 91.4 16 0.00034 36.2 18.1 113 137-256 84-196 (518)
181 KOG4340 Uncharacterized conser 91.4 6.8 0.00015 37.6 13.6 183 28-250 22-206 (459)
182 KOG1070 rRNA processing protei 91.2 17 0.00037 41.9 18.4 163 62-252 1466-1630(1710)
183 PF08784 RPA_C: Replication pr 91.2 0.2 4.3E-06 40.2 3.0 38 354-391 64-101 (102)
184 PF13512 TPR_18: Tetratricopep 91.1 5.3 0.00011 34.1 11.6 85 141-237 15-99 (142)
185 PF03704 BTAD: Bacterial trans 91.0 1.7 3.7E-05 36.9 8.9 54 28-85 74-127 (146)
186 KOG0543 FKBP-type peptidyl-pro 90.8 5.8 0.00013 39.5 13.2 103 56-166 210-321 (397)
187 PF13431 TPR_17: Tetratricopep 90.5 0.33 7.1E-06 30.4 2.9 32 39-74 2-33 (34)
188 PRK15331 chaperone protein Sic 90.5 11 0.00025 32.9 13.4 94 140-251 41-134 (165)
189 KOG1174 Anaphase-promoting com 90.4 9.4 0.0002 38.3 14.1 151 32-211 350-500 (564)
190 KOG3054 Uncharacterized conser 90.4 0.47 1E-05 43.4 4.9 55 347-401 206-260 (299)
191 PF09295 ChAPs: ChAPs (Chs5p-A 89.7 5.2 0.00011 40.3 12.1 115 30-166 183-298 (395)
192 PF10579 Rapsyn_N: Rapsyn N-te 89.6 1.3 2.7E-05 33.7 5.8 59 15-79 10-68 (80)
193 PF13174 TPR_6: Tetratricopept 89.3 0.68 1.5E-05 28.0 3.7 29 56-84 2-30 (33)
194 PRK15363 pathogenicity island 88.9 6.3 0.00014 34.2 10.5 52 29-84 48-99 (157)
195 PF13412 HTH_24: Winged helix- 88.7 1.2 2.7E-05 30.0 4.9 42 345-386 7-48 (48)
196 PRK14720 transcript cleavage f 88.7 45 0.00099 37.3 21.9 136 51-209 28-176 (906)
197 KOG1070 rRNA processing protei 88.6 54 0.0012 38.1 20.2 164 20-208 1462-1626(1710)
198 PF08220 HTH_DeoR: DeoR-like h 88.4 0.91 2E-05 32.2 4.2 43 343-385 2-44 (57)
199 PF07719 TPR_2: Tetratricopept 88.3 1.3 2.9E-05 26.9 4.6 30 55-84 2-31 (34)
200 KOG0550 Molecular chaperone (D 87.7 21 0.00047 35.8 14.4 167 29-214 182-353 (486)
201 KOG0624 dsRNA-activated protei 87.7 30 0.00065 34.0 15.7 192 29-250 168-369 (504)
202 PF13374 TPR_10: Tetratricopep 86.8 1.9 4.1E-05 27.5 4.8 31 54-84 2-32 (42)
203 PF13176 TPR_7: Tetratricopept 86.7 1 2.2E-05 28.4 3.3 28 140-167 3-30 (36)
204 KOG0553 TPR repeat-containing 86.6 6.5 0.00014 37.6 9.9 98 53-165 80-178 (304)
205 PF00515 TPR_1: Tetratricopept 86.6 2.1 4.6E-05 26.1 4.8 30 55-84 2-31 (34)
206 PF13181 TPR_8: Tetratricopept 86.2 2.3 4.9E-05 25.9 4.7 30 55-84 2-31 (34)
207 PF12688 TPR_5: Tetratrico pep 85.9 3.4 7.4E-05 34.2 7.0 54 30-84 15-68 (120)
208 smart00550 Zalpha Z-DNA-bindin 85.7 1.9 4.2E-05 31.7 4.9 43 345-387 10-54 (68)
209 PF13174 TPR_6: Tetratricopept 85.2 2.1 4.6E-05 25.7 4.2 29 139-167 3-31 (33)
210 PF12802 MarR_2: MarR family; 85.0 3.2 7E-05 29.4 5.7 40 355-394 21-60 (62)
211 KOG3616 Selective LIM binding 84.6 33 0.00072 37.0 14.6 101 60-163 712-818 (1636)
212 PF02082 Rrf2: Transcriptional 84.3 7.3 0.00016 29.7 7.8 54 355-409 25-78 (83)
213 TIGR03504 FimV_Cterm FimV C-te 84.2 1.2 2.7E-05 29.7 2.9 27 139-165 2-28 (44)
214 PF13374 TPR_10: Tetratricopep 83.8 2.3 4.9E-05 27.1 4.1 33 137-169 3-35 (42)
215 KOG0553 TPR repeat-containing 83.5 19 0.00041 34.6 11.5 91 143-251 88-178 (304)
216 KOG3617 WD40 and TPR repeat-co 83.0 80 0.0017 34.8 18.1 163 54-248 967-1171(1416)
217 PF11817 Foie-gras_1: Foie gra 82.9 14 0.00031 34.6 10.7 81 114-200 156-236 (247)
218 smart00345 HTH_GNTR helix_turn 82.7 3.2 6.9E-05 28.9 4.9 37 350-386 14-51 (60)
219 PF07719 TPR_2: Tetratricopept 82.4 3.6 7.7E-05 24.9 4.4 29 138-166 3-31 (34)
220 COG5010 TadD Flp pilus assembl 82.1 22 0.00047 33.4 11.1 116 28-161 112-227 (257)
221 PHA02943 hypothetical protein; 82.1 17 0.00038 31.1 9.5 78 345-427 15-92 (165)
222 KOG2796 Uncharacterized conser 81.9 48 0.001 31.5 13.5 104 137-251 178-281 (366)
223 PF13181 TPR_8: Tetratricopept 81.0 4.7 0.0001 24.4 4.6 30 183-212 2-31 (34)
224 PF01047 MarR: MarR family; I 80.9 4.7 0.0001 28.2 5.2 49 346-394 8-56 (59)
225 PF09986 DUF2225: Uncharacteri 80.4 47 0.001 30.4 15.6 94 111-210 92-193 (214)
226 PLN03098 LPA1 LOW PSII ACCUMUL 80.3 4.9 0.00011 40.8 6.8 54 29-83 88-141 (453)
227 KOG3616 Selective LIM binding 79.7 23 0.0005 38.1 11.5 62 137-211 733-794 (1636)
228 TIGR00373 conserved hypothetic 79.6 27 0.00058 30.4 10.4 71 353-423 26-102 (158)
229 COG4700 Uncharacterized protei 79.3 48 0.001 29.9 12.2 96 139-251 127-222 (251)
230 cd00090 HTH_ARSR Arsenical Res 78.4 13 0.00028 26.8 7.1 45 356-400 21-65 (78)
231 COG1497 Predicted transcriptio 78.3 15 0.00032 34.1 8.5 69 347-423 17-85 (260)
232 smart00344 HTH_ASNC helix_turn 78.0 5.5 0.00012 31.9 5.3 47 345-391 7-56 (108)
233 PF12862 Apc5: Anaphase-promot 77.9 18 0.00039 28.2 8.1 60 25-84 7-71 (94)
234 cd07377 WHTH_GntR Winged helix 77.9 7.6 0.00016 27.5 5.6 36 351-386 20-56 (66)
235 PF00325 Crp: Bacterial regula 77.8 4.1 8.9E-05 25.2 3.4 30 356-385 3-32 (32)
236 smart00420 HTH_DEOR helix_turn 77.7 7.5 0.00016 26.1 5.3 34 354-387 13-46 (53)
237 KOG4414 COP9 signalosome, subu 77.5 7.2 0.00016 33.1 5.8 82 293-378 74-155 (197)
238 TIGR02010 IscR iron-sulfur clu 77.4 9.2 0.0002 32.2 6.7 49 354-402 24-72 (135)
239 COG4235 Cytochrome c biogenesi 77.1 71 0.0015 30.7 16.0 126 27-168 133-259 (287)
240 KOG1125 TPR repeat-containing 77.0 85 0.0018 32.9 14.4 160 32-212 335-528 (579)
241 KOG3785 Uncharacterized conser 76.3 76 0.0016 31.5 13.1 122 29-165 35-180 (557)
242 PRK10153 DNA-binding transcrip 76.2 72 0.0016 33.5 14.3 59 141-212 425-483 (517)
243 PRK11014 transcriptional repre 76.1 11 0.00023 32.0 6.8 54 350-403 20-73 (141)
244 PRK06266 transcription initiat 75.9 36 0.00078 30.3 10.3 86 325-411 5-94 (178)
245 PF10345 Cohesin_load: Cohesin 75.9 1.2E+02 0.0026 32.6 25.8 218 30-253 74-332 (608)
246 PF13428 TPR_14: Tetratricopep 75.6 6.4 0.00014 25.8 4.2 29 139-167 4-32 (44)
247 PRK11920 rirA iron-responsive 75.6 10 0.00022 32.8 6.6 58 345-402 13-71 (153)
248 COG3118 Thioredoxin domain-con 75.6 78 0.0017 30.5 12.8 132 16-167 133-267 (304)
249 PF01022 HTH_5: Bacterial regu 75.4 9.7 0.00021 25.5 5.1 33 354-386 14-46 (47)
250 PRK11169 leucine-responsive tr 75.1 6.8 0.00015 34.2 5.5 49 343-391 16-67 (164)
251 PF13404 HTH_AsnC-type: AsnC-t 74.8 5.6 0.00012 26.2 3.7 34 346-379 8-41 (42)
252 PRK11179 DNA-binding transcrip 74.7 6.4 0.00014 33.9 5.2 46 346-391 14-62 (153)
253 PF00515 TPR_1: Tetratricopept 74.6 8.6 0.00019 23.3 4.4 28 138-165 3-30 (34)
254 PF00392 GntR: Bacterial regul 74.6 9.1 0.0002 27.5 5.2 50 337-386 5-55 (64)
255 smart00418 HTH_ARSR helix_turn 74.6 10 0.00022 26.4 5.5 46 353-398 8-53 (66)
256 smart00419 HTH_CRP helix_turn_ 74.5 5.4 0.00012 26.4 3.7 32 355-386 8-39 (48)
257 PF04703 FaeA: FaeA-like prote 74.2 5.4 0.00012 28.8 3.8 34 353-386 13-46 (62)
258 PF10300 DUF3808: Protein of u 74.1 37 0.00081 35.1 11.5 86 150-250 247-333 (468)
259 PF08279 HTH_11: HTH domain; 74.1 11 0.00023 26.0 5.3 40 344-383 3-43 (55)
260 KOG0548 Molecular co-chaperone 73.6 27 0.00059 36.1 9.9 64 27-95 369-432 (539)
261 PRK10857 DNA-binding transcrip 73.1 11 0.00024 33.0 6.3 49 354-402 24-72 (164)
262 PRK09954 putative kinase; Prov 72.5 8.9 0.00019 38.0 6.3 54 346-399 8-64 (362)
263 PF13545 HTH_Crp_2: Crp-like h 72.3 6 0.00013 29.3 3.9 44 355-402 28-71 (76)
264 PF09986 DUF2225: Uncharacteri 72.2 18 0.00039 33.2 7.7 52 32-83 141-194 (214)
265 COG1959 Predicted transcriptio 71.9 8.3 0.00018 33.3 5.1 58 343-400 11-70 (150)
266 PF12862 Apc5: Anaphase-promot 71.0 47 0.001 25.8 9.0 69 147-218 9-77 (94)
267 PF13601 HTH_34: Winged helix 70.9 32 0.0007 26.1 7.6 49 346-394 5-53 (80)
268 TIGR03879 near_KaiC_dom probab 70.8 5.6 0.00012 29.8 3.3 35 351-385 28-62 (73)
269 PF04733 Coatomer_E: Coatomer 70.7 10 0.00022 36.5 6.0 52 141-209 107-158 (290)
270 COG1522 Lrp Transcriptional re 70.4 8.9 0.00019 32.7 5.1 45 347-391 14-61 (154)
271 PF13428 TPR_14: Tetratricopep 70.4 10 0.00023 24.8 4.3 31 56-87 3-33 (44)
272 COG4700 Uncharacterized protei 70.3 83 0.0018 28.4 12.2 99 139-252 92-190 (251)
273 TIGR02787 codY_Gpos GTP-sensin 70.2 18 0.00038 33.7 7.0 36 354-389 197-232 (251)
274 cd00092 HTH_CRP helix_turn_hel 70.2 7.3 0.00016 27.9 3.8 34 354-387 24-57 (67)
275 COG4235 Cytochrome c biogenesi 70.0 17 0.00037 34.8 7.1 61 17-84 197-257 (287)
276 PF07721 TPR_4: Tetratricopept 68.9 7 0.00015 22.5 2.8 22 139-160 4-25 (26)
277 PF01325 Fe_dep_repress: Iron 68.8 15 0.00033 26.2 5.1 40 347-386 14-53 (60)
278 PRK10870 transcriptional repre 68.4 59 0.0013 28.7 10.0 43 354-396 70-112 (176)
279 PF09339 HTH_IclR: IclR helix- 68.4 13 0.00029 25.4 4.7 41 346-386 8-49 (52)
280 PF12840 HTH_20: Helix-turn-he 68.3 15 0.00032 26.1 5.1 41 347-387 16-56 (61)
281 TIGR00738 rrf2_super rrf2 fami 67.7 21 0.00045 29.6 6.7 44 354-397 24-67 (132)
282 PF13463 HTH_27: Winged helix 67.7 26 0.00057 25.0 6.4 44 351-394 14-57 (68)
283 TIGR02337 HpaR homoprotocatech 67.6 40 0.00086 27.3 8.2 50 352-401 39-91 (118)
284 PF01535 PPR: PPR repeat; Int 67.3 8.7 0.00019 22.4 3.2 26 57-82 3-28 (31)
285 PRK14165 winged helix-turn-hel 66.9 34 0.00075 31.4 8.3 56 347-402 13-68 (217)
286 KOG3151 26S proteasome regulat 66.5 1.1E+02 0.0023 28.5 11.1 74 293-371 135-208 (260)
287 TIGR03504 FimV_Cterm FimV C-te 66.5 14 0.00031 24.6 4.2 25 59-83 4-28 (44)
288 KOG2471 TPR repeat-containing 65.4 89 0.0019 32.3 11.3 183 56-253 102-314 (696)
289 COG3071 HemY Uncharacterized e 64.8 1.6E+02 0.0034 29.6 14.8 57 140-209 332-388 (400)
290 PF06552 TOM20_plant: Plant sp 64.7 27 0.00058 31.1 6.8 51 32-86 51-105 (186)
291 KOG4162 Predicted calmodulin-b 64.6 2.2E+02 0.0048 31.1 22.0 59 141-211 655-713 (799)
292 KOG1915 Cell cycle control pro 64.6 1.8E+02 0.0039 30.1 17.7 166 61-248 329-497 (677)
293 PF08221 HTH_9: RNA polymerase 64.5 28 0.00061 25.0 5.9 51 331-386 8-58 (62)
294 PF09743 DUF2042: Uncharacteri 64.5 28 0.0006 33.3 7.4 41 352-392 127-167 (272)
295 PF14853 Fis1_TPR_C: Fis1 C-te 64.4 35 0.00076 23.7 6.1 29 56-84 3-31 (53)
296 KOG0687 26S proteasome regulat 64.4 1.5E+02 0.0032 29.1 12.3 127 33-167 81-212 (393)
297 COG1729 Uncharacterized protei 64.3 22 0.00049 33.6 6.6 65 28-94 190-254 (262)
298 PRK10434 srlR DNA-bindng trans 63.9 12 0.00025 35.4 4.8 44 342-385 6-49 (256)
299 PF13812 PPR_3: Pentatricopept 63.9 18 0.0004 21.5 4.3 27 56-82 3-29 (34)
300 TIGR02944 suf_reg_Xantho FeS a 63.5 9.5 0.00021 31.8 3.7 44 354-397 24-67 (130)
301 KOG1127 TPR repeat-containing 63.4 2.7E+02 0.0058 31.7 18.5 196 17-250 459-658 (1238)
302 PF12739 TRAPPC-Trs85: ER-Golg 63.1 1.8E+02 0.0038 29.5 17.9 182 53-254 207-402 (414)
303 KOG3785 Uncharacterized conser 62.5 1.7E+02 0.0037 29.1 17.2 23 394-416 529-551 (557)
304 KOG1127 TPR repeat-containing 62.3 2.8E+02 0.006 31.5 15.9 64 141-209 635-698 (1238)
305 COG5187 RPN7 26S proteasome re 62.1 1.6E+02 0.0034 28.5 13.6 128 33-168 92-224 (412)
306 PRK10411 DNA-binding transcrip 61.8 14 0.00031 34.4 5.0 45 342-386 5-49 (240)
307 TIGR00756 PPR pentatricopeptid 61.6 17 0.00037 21.5 3.9 27 56-82 2-28 (35)
308 TIGR01764 excise DNA binding d 61.3 19 0.0004 23.7 4.3 37 356-398 2-38 (49)
309 smart00347 HTH_MARR helix_turn 61.1 71 0.0015 24.4 8.3 40 354-393 23-62 (101)
310 PLN03098 LPA1 LOW PSII ACCUMUL 60.7 34 0.00074 34.9 7.6 65 138-211 77-141 (453)
311 KOG2114 Vacuolar assembly/sort 60.4 88 0.0019 34.4 10.8 52 32-87 350-401 (933)
312 KOG1128 Uncharacterized conser 60.1 1.9E+02 0.0041 31.4 13.1 158 59-249 416-580 (777)
313 KOG4162 Predicted calmodulin-b 60.1 2.6E+02 0.0057 30.5 18.7 63 182-250 650-712 (799)
314 smart00346 HTH_ICLR helix_turn 59.5 23 0.0005 27.0 5.1 52 345-398 9-61 (91)
315 PF05331 DUF742: Protein of un 59.5 20 0.00043 29.4 4.7 43 345-389 47-89 (114)
316 PF01726 LexA_DNA_bind: LexA D 59.2 23 0.00051 25.7 4.7 32 355-386 25-57 (65)
317 TIGR02702 SufR_cyano iron-sulf 59.2 49 0.0011 29.9 7.9 44 345-388 5-48 (203)
318 PF04184 ST7: ST7 protein; In 59.1 2.3E+02 0.005 29.5 13.9 156 10-207 165-320 (539)
319 PF01978 TrmB: Sugar-specific 58.7 20 0.00044 26.0 4.3 38 352-389 19-56 (68)
320 PF14947 HTH_45: Winged helix- 58.5 53 0.0011 24.6 6.7 45 353-401 17-61 (77)
321 KOG1173 Anaphase-promoting com 58.5 2.5E+02 0.0053 29.7 16.9 166 54-252 244-410 (611)
322 TIGR01610 phage_O_Nterm phage 58.5 37 0.0008 26.6 6.1 47 352-400 44-90 (95)
323 KOG0985 Vesicle coat protein c 58.4 3E+02 0.0065 31.5 14.4 27 21-47 988-1015(1666)
324 PF04097 Nic96: Nup93/Nic96; 58.0 96 0.0021 33.4 11.0 126 32-165 393-534 (613)
325 PF08311 Mad3_BUB1_I: Mad3/BUB 57.9 1.1E+02 0.0024 25.4 9.3 81 112-208 42-125 (126)
326 COG4783 Putative Zn-dependent 57.5 1.3E+02 0.0028 31.0 11.0 91 141-249 311-401 (484)
327 PRK13509 transcriptional repre 57.3 19 0.00042 33.8 5.0 45 342-386 6-50 (251)
328 PRK10906 DNA-binding transcrip 57.3 18 0.00039 34.1 4.8 46 341-386 5-50 (252)
329 PRK04424 fatty acid biosynthes 57.1 12 0.00026 33.4 3.5 44 342-385 8-51 (185)
330 smart00028 TPR Tetratricopepti 57.0 22 0.00048 19.6 3.7 29 55-83 2-30 (34)
331 PF04545 Sigma70_r4: Sigma-70, 56.9 30 0.00064 23.3 4.7 29 353-381 18-46 (50)
332 PF12728 HTH_17: Helix-turn-he 55.8 27 0.0006 23.5 4.4 38 356-399 2-39 (51)
333 PF12854 PPR_1: PPR repeat 55.6 20 0.00044 22.1 3.4 27 54-80 7-33 (34)
334 PF13041 PPR_2: PPR repeat fam 55.4 25 0.00054 23.5 4.1 29 55-83 4-32 (50)
335 PF06163 DUF977: Bacterial pro 54.9 35 0.00075 28.4 5.4 64 346-421 17-81 (127)
336 PF04967 HTH_10: HTH DNA bindi 54.4 20 0.00043 25.0 3.4 27 354-380 22-48 (53)
337 KOG4555 TPR repeat-containing 54.1 72 0.0016 27.0 7.2 51 30-84 57-107 (175)
338 KOG4555 TPR repeat-containing 53.5 1.4E+02 0.0031 25.4 12.3 113 143-273 50-166 (175)
339 COG1747 Uncharacterized N-term 52.8 3E+02 0.0064 28.9 16.1 98 58-165 136-234 (711)
340 KOG3252 Uncharacterized conser 52.0 56 0.0012 29.1 6.5 93 293-399 96-189 (217)
341 PF14561 TPR_20: Tetratricopep 51.5 60 0.0013 25.2 6.2 67 35-106 7-73 (90)
342 PF13730 HTH_36: Helix-turn-he 51.3 22 0.00047 24.4 3.4 30 356-385 26-55 (55)
343 PF02002 TFIIE_alpha: TFIIE al 50.9 20 0.00044 28.6 3.5 48 353-400 25-74 (105)
344 PF08631 SPO22: Meiosis protei 50.9 2.2E+02 0.0049 26.9 20.4 174 27-251 4-186 (278)
345 COG1349 GlpR Transcriptional r 50.7 25 0.00054 33.1 4.6 45 342-386 6-50 (253)
346 PF04910 Tcf25: Transcriptiona 50.7 2.1E+02 0.0046 28.4 11.5 134 32-189 10-152 (360)
347 KOG2041 WD40 repeat protein [G 49.9 3.2E+02 0.0068 29.8 12.5 55 190-248 768-822 (1189)
348 TIGR02844 spore_III_D sporulat 49.6 26 0.00056 26.7 3.7 34 342-376 7-40 (80)
349 PF11207 DUF2989: Protein of u 49.5 20 0.00043 32.5 3.5 45 29-73 153-197 (203)
350 PRK03902 manganese transport t 48.8 1.5E+02 0.0032 24.9 8.8 52 347-401 14-65 (142)
351 PRK09802 DNA-binding transcrip 48.7 29 0.00064 33.0 4.8 46 341-386 17-62 (269)
352 PF10668 Phage_terminase: Phag 48.5 31 0.00068 24.7 3.7 35 344-378 11-45 (60)
353 cd00280 TRFH Telomeric Repeat 47.7 71 0.0015 28.6 6.5 52 32-83 85-140 (200)
354 TIGR01884 cas_HTH CRISPR locus 47.6 64 0.0014 29.1 6.7 50 349-399 151-200 (203)
355 KOG4234 TPR repeat-containing 47.4 2.3E+02 0.0049 26.0 12.4 100 53-165 94-197 (271)
356 KOG2047 mRNA splicing factor [ 47.3 4E+02 0.0087 28.8 18.1 122 32-165 154-277 (835)
357 PF10516 SHNi-TPR: SHNi-TPR; 47.2 29 0.00062 22.4 3.1 27 225-251 4-30 (38)
358 COG3947 Response regulator con 47.2 85 0.0018 30.3 7.4 68 128-207 266-338 (361)
359 KOG0551 Hsp90 co-chaperone CNS 46.8 1.2E+02 0.0025 29.9 8.3 91 149-248 55-145 (390)
360 KOG2168 Cullins [Cell cycle co 46.7 1.9E+02 0.004 32.0 10.7 30 137-166 706-737 (835)
361 KOG4340 Uncharacterized conser 46.0 1.5E+02 0.0033 28.7 8.9 181 18-206 51-265 (459)
362 KOG3364 Membrane protein invol 45.4 75 0.0016 27.0 6.0 52 30-83 49-100 (149)
363 PRK10681 DNA-binding transcrip 45.3 29 0.00062 32.7 4.1 40 341-380 7-46 (252)
364 PF07106 TBPIP: Tat binding pr 45.1 1.6E+02 0.0035 25.6 8.7 73 347-423 11-93 (169)
365 PF10771 DUF2582: Protein of u 45.0 74 0.0016 23.2 5.3 50 347-398 14-63 (65)
366 PF10516 SHNi-TPR: SHNi-TPR; 44.5 53 0.0012 21.1 4.0 35 183-217 2-36 (38)
367 KOG2235 Uncharacterized conser 44.3 95 0.0021 32.9 7.8 62 331-399 114-175 (776)
368 KOG3677 RNA polymerase I-assoc 43.8 3.7E+02 0.008 27.4 17.4 180 188-381 241-454 (525)
369 PRK09334 30S ribosomal protein 43.4 74 0.0016 24.6 5.3 39 351-389 37-75 (86)
370 COG3629 DnrI DNA-binding trans 42.6 3.1E+02 0.0068 26.3 12.7 66 134-211 151-216 (280)
371 PF05584 Sulfolobus_pRN: Sulfo 42.1 86 0.0019 23.4 5.3 32 355-386 18-49 (72)
372 PF14669 Asp_Glu_race_2: Putat 41.5 2.7E+02 0.0059 25.2 11.5 151 60-215 57-214 (233)
373 cd06171 Sigma70_r4 Sigma70, re 41.0 73 0.0016 20.7 4.7 27 354-380 25-51 (55)
374 KOG4648 Uncharacterized conser 40.8 2E+02 0.0044 28.5 9.0 94 57-165 100-194 (536)
375 COG5071 RPN5 26S proteasome re 40.5 3.6E+02 0.0077 26.3 13.8 174 27-208 43-238 (439)
376 PRK15331 chaperone protein Sic 39.8 69 0.0015 28.1 5.3 51 29-83 50-100 (165)
377 PF08281 Sigma70_r4_2: Sigma-7 39.4 39 0.00085 23.0 3.1 29 352-380 23-51 (54)
378 PRK11512 DNA-binding transcrip 38.9 81 0.0018 26.5 5.7 45 354-398 53-97 (144)
379 PRK11534 DNA-binding transcrip 38.9 67 0.0014 29.3 5.5 63 334-398 9-71 (224)
380 PF08280 HTH_Mga: M protein tr 38.9 72 0.0016 22.4 4.5 39 342-380 6-44 (59)
381 PF03297 Ribosomal_S25: S25 ri 38.8 1.4E+02 0.003 24.1 6.4 49 350-398 54-102 (105)
382 PF00244 14-3-3: 14-3-3 protei 38.8 3.2E+02 0.007 25.3 15.8 44 18-61 2-50 (236)
383 COG3629 DnrI DNA-binding trans 38.7 1.7E+02 0.0036 28.1 8.1 52 29-84 166-217 (280)
384 KOG3617 WD40 and TPR repeat-co 38.5 6.1E+02 0.013 28.4 17.3 122 58-208 761-884 (1416)
385 PRK10153 DNA-binding transcrip 38.5 86 0.0019 32.9 6.8 52 28-84 432-483 (517)
386 PF14689 SPOB_a: Sensor_kinase 38.4 1.5E+02 0.0032 21.2 6.5 29 138-166 25-53 (62)
387 PF10007 DUF2250: Uncharacteri 38.3 72 0.0016 25.0 4.7 40 347-386 13-52 (92)
388 PF08424 NRDE-2: NRDE-2, neces 38.2 3.9E+02 0.0084 26.0 15.8 126 33-167 48-185 (321)
389 PF14493 HTH_40: Helix-turn-he 37.9 40 0.00087 26.1 3.3 33 354-386 12-45 (91)
390 COG2345 Predicted transcriptio 37.8 84 0.0018 28.9 5.7 43 346-388 16-58 (218)
391 PF12968 DUF3856: Domain of Un 37.7 2.4E+02 0.0053 23.5 10.1 104 25-165 18-129 (144)
392 PF04492 Phage_rep_O: Bacterio 37.7 47 0.001 26.5 3.6 35 351-385 50-84 (100)
393 PRK10141 DNA-binding transcrip 37.5 2.3E+02 0.0049 23.3 7.8 44 355-398 30-73 (117)
394 PF10300 DUF3808: Protein of u 37.1 4.9E+02 0.011 26.9 15.0 103 130-248 264-373 (468)
395 KOG3431 Apoptosis-related prot 36.7 30 0.00065 28.4 2.3 53 339-391 39-91 (129)
396 KOG1128 Uncharacterized conser 36.5 3.9E+02 0.0085 29.1 11.0 60 141-212 558-617 (777)
397 KOG1174 Anaphase-promoting com 36.3 4.9E+02 0.011 26.6 21.2 165 54-252 232-398 (564)
398 PF04760 IF2_N: Translation in 36.1 36 0.00079 23.4 2.5 24 355-378 3-26 (54)
399 PF13542 HTH_Tnp_ISL3: Helix-t 35.9 1E+02 0.0023 20.6 4.8 23 356-378 28-50 (52)
400 KOG2066 Vacuolar assembly/sort 35.8 4.1E+02 0.0089 29.2 11.1 127 29-165 369-534 (846)
401 PF08631 SPO22: Meiosis protei 35.7 3.9E+02 0.0084 25.3 16.5 106 137-252 36-151 (278)
402 TIGR01889 Staph_reg_Sar staphy 35.6 2.3E+02 0.0049 22.6 8.0 42 354-395 42-83 (109)
403 KOG1538 Uncharacterized conser 35.5 6.1E+02 0.013 27.5 13.6 32 217-248 799-830 (1081)
404 PF12324 HTH_15: Helix-turn-he 35.4 67 0.0015 24.3 3.9 35 346-380 29-63 (77)
405 PRK04214 rbn ribonuclease BN/u 35.4 1.2E+02 0.0026 30.8 7.1 71 354-426 309-390 (412)
406 TIGR03338 phnR_burk phosphonat 35.3 1.3E+02 0.0027 27.1 6.7 63 335-399 14-76 (212)
407 PF14853 Fis1_TPR_C: Fis1 C-te 34.3 49 0.0011 23.0 2.9 41 20-62 4-45 (53)
408 PF00440 TetR_N: Bacterial reg 34.3 61 0.0013 21.4 3.3 22 351-372 12-33 (47)
409 PF10078 DUF2316: Uncharacteri 34.1 40 0.00087 26.3 2.6 23 354-376 22-44 (89)
410 PRK03837 transcriptional regul 33.9 1.5E+02 0.0033 27.1 7.1 63 335-399 16-79 (241)
411 PRK03573 transcriptional regul 33.0 2.9E+02 0.0062 23.0 8.6 42 355-396 46-87 (144)
412 PLN03083 E3 UFM1-protein ligas 32.9 1.4E+02 0.0031 32.9 7.4 48 348-398 127-174 (803)
413 PRK10225 DNA-binding transcrip 32.7 1.6E+02 0.0035 27.4 7.1 64 334-399 11-75 (257)
414 PRK04239 hypothetical protein; 32.5 33 0.00072 27.8 2.0 51 340-391 37-88 (110)
415 PLN02789 farnesyltranstransfer 32.4 4.8E+02 0.01 25.4 14.1 119 29-165 50-171 (320)
416 PRK13777 transcriptional regul 32.0 2.7E+02 0.0058 24.9 8.0 48 349-396 53-100 (185)
417 PF05843 Suf: Suppressor of fo 31.9 4.5E+02 0.0098 24.9 12.1 121 32-168 17-139 (280)
418 TIGR02812 fadR_gamma fatty aci 31.7 1.4E+02 0.0031 27.3 6.5 63 335-399 9-72 (235)
419 PF13518 HTH_28: Helix-turn-he 31.6 1E+02 0.0022 20.4 4.2 35 355-390 12-46 (52)
420 PF04124 Dor1: Dor1-like famil 31.6 2.3E+02 0.0051 27.8 8.3 26 59-84 111-136 (338)
421 COG4367 Uncharacterized protei 31.6 48 0.001 25.6 2.6 23 354-376 22-44 (97)
422 PF04190 DUF410: Protein of un 31.6 3.2E+02 0.0068 25.8 8.9 44 201-248 69-116 (260)
423 PRK13918 CRP/FNR family transc 31.4 69 0.0015 28.4 4.2 44 355-402 149-192 (202)
424 PF04053 Coatomer_WDAD: Coatom 31.3 2.3E+02 0.0051 29.1 8.4 25 141-165 352-376 (443)
425 COG3413 Predicted DNA binding 31.0 52 0.0011 30.0 3.4 27 354-380 177-203 (215)
426 TIGR03826 YvyF flagellar opero 30.9 66 0.0014 27.3 3.6 40 347-390 36-77 (137)
427 PF04348 LppC: LppC putative l 30.2 17 0.00037 38.3 0.0 98 139-248 27-124 (536)
428 smart00421 HTH_LUXR helix_turn 30.1 1.2E+02 0.0027 20.0 4.5 28 354-381 17-44 (58)
429 PHA00738 putative HTH transcri 30.0 3E+02 0.0065 22.3 8.1 66 355-423 26-91 (108)
430 KOG3151 26S proteasome regulat 29.9 4.7E+02 0.01 24.5 10.0 82 300-382 106-188 (260)
431 COG1802 GntR Transcriptional r 29.8 90 0.002 28.6 4.8 63 334-398 18-80 (230)
432 PRK11414 colanic acid/biofilm 29.7 1.1E+02 0.0024 27.8 5.3 54 335-388 14-67 (221)
433 PF05843 Suf: Suppressor of fo 29.5 4.9E+02 0.011 24.6 10.8 58 141-210 6-64 (280)
434 PRK11753 DNA-binding transcrip 28.8 1.2E+02 0.0025 27.1 5.3 43 355-401 168-210 (211)
435 PF04539 Sigma70_r3: Sigma-70 28.8 91 0.002 23.0 3.8 25 354-378 19-43 (78)
436 PF00244 14-3-3: 14-3-3 protei 28.6 4.8E+02 0.01 24.2 19.6 54 199-252 143-199 (236)
437 TIGR00498 lexA SOS regulatory 28.5 83 0.0018 28.1 4.2 37 356-392 26-63 (199)
438 PF06969 HemN_C: HemN C-termin 28.4 1.4E+02 0.0031 21.1 4.7 44 353-400 18-62 (66)
439 PRK11050 manganese transport r 28.4 3.8E+02 0.0081 22.9 10.4 45 354-401 50-94 (152)
440 KOG4234 TPR repeat-containing 28.3 3.2E+02 0.0069 25.1 7.6 61 26-87 105-166 (271)
441 PF09613 HrpB1_HrpK: Bacterial 28.3 2.7E+02 0.0058 24.3 7.0 57 141-209 15-71 (160)
442 PF10366 Vps39_1: Vacuolar sor 27.6 82 0.0018 25.4 3.6 27 56-82 41-67 (108)
443 PF12793 SgrR_N: Sugar transpo 27.3 84 0.0018 25.7 3.6 47 354-400 18-67 (115)
444 cd04761 HTH_MerR-SF Helix-Turn 27.3 1E+02 0.0022 20.2 3.5 28 357-388 2-29 (49)
445 PRK10046 dpiA two-component re 27.1 1.5E+02 0.0032 26.9 5.7 43 350-392 172-214 (225)
446 PRK11906 transcriptional regul 26.4 4.1E+02 0.009 27.3 9.0 69 32-108 354-422 (458)
447 PF01638 HxlR: HxlR-like helix 26.4 2.8E+02 0.0061 21.2 6.4 65 354-418 17-86 (90)
448 PF03081 Exo70: Exo70 exocyst 26.2 1.2E+02 0.0026 30.1 5.2 80 295-379 292-371 (371)
449 PF15015 NYD-SP12_N: Spermatog 26.2 7.3E+02 0.016 25.5 12.9 130 135-274 175-315 (569)
450 PF01984 dsDNA_bind: Double-st 26.1 48 0.001 26.8 1.9 22 370-391 62-83 (107)
451 cd06170 LuxR_C_like C-terminal 25.9 94 0.002 20.7 3.3 28 354-381 14-41 (57)
452 PF14689 SPOB_a: Sensor_kinase 25.8 1.6E+02 0.0035 21.0 4.5 27 58-84 27-53 (62)
453 PRK04984 fatty acid metabolism 25.8 2.1E+02 0.0046 26.2 6.6 61 336-398 11-72 (239)
454 PF14561 TPR_20: Tetratricopep 25.7 2E+02 0.0042 22.3 5.3 47 29-77 35-81 (90)
455 KOG2034 Vacuolar sorting prote 25.4 1E+02 0.0023 34.0 4.8 56 190-254 366-421 (911)
456 PF09743 DUF2042: Uncharacteri 25.4 1.7E+02 0.0038 27.9 5.9 44 345-391 185-228 (272)
457 COG1321 TroR Mn-dependent tran 24.6 1.5E+02 0.0033 25.6 4.9 50 349-401 18-67 (154)
458 PF10938 YfdX: YfdX protein; 24.2 4.4E+02 0.0096 22.7 7.7 111 140-251 6-146 (155)
459 PF01476 LysM: LysM domain; I 24.0 68 0.0015 20.5 2.1 19 357-375 8-26 (44)
460 PF11817 Foie-gras_1: Foie gra 23.9 5.8E+02 0.012 23.7 9.1 76 200-275 156-232 (247)
461 PF13384 HTH_23: Homeodomain-l 23.8 88 0.0019 20.7 2.7 29 355-383 17-45 (50)
462 PRK15090 DNA-binding transcrip 23.7 1.6E+02 0.0034 27.6 5.3 42 346-387 19-60 (257)
463 KOG1498 26S proteasome regulat 23.7 7.8E+02 0.017 24.9 15.6 165 31-208 47-238 (439)
464 PF08679 DsrD: Dissimilatory s 23.6 1.2E+02 0.0026 22.2 3.3 34 353-386 17-51 (67)
465 COG3107 LppC Putative lipoprot 23.6 5.7E+02 0.012 27.0 9.3 95 141-248 68-162 (604)
466 PRK04217 hypothetical protein; 23.2 1.5E+02 0.0033 24.0 4.3 42 353-394 56-104 (110)
467 KOG3951 Uncharacterized conser 23.1 6.3E+02 0.014 23.8 8.7 27 2-28 15-42 (321)
468 KOG2047 mRNA splicing factor [ 22.9 1E+03 0.022 26.0 18.1 64 184-249 389-452 (835)
469 PLN02789 farnesyltranstransfer 22.7 7.2E+02 0.016 24.2 12.6 24 61-84 149-172 (320)
470 PF03745 DUF309: Domain of unk 22.7 2.6E+02 0.0057 20.0 5.0 54 191-245 8-62 (62)
471 PF04297 UPF0122: Putative hel 22.6 86 0.0019 25.1 2.7 43 338-380 14-58 (101)
472 PF06971 Put_DNA-bind_N: Putat 22.5 1.3E+02 0.0029 20.6 3.3 25 353-377 26-50 (50)
473 KOG3081 Vesicle coat complex C 22.4 7E+02 0.015 23.9 16.4 147 31-210 70-235 (299)
474 PF02042 RWP-RK: RWP-RK domain 22.3 95 0.0021 21.6 2.5 19 355-373 4-22 (52)
475 smart00531 TFIIE Transcription 22.3 3.9E+02 0.0084 22.7 7.0 49 352-400 12-65 (147)
476 PRK14511 maltooligosyl trehalo 22.2 73 0.0016 35.6 3.0 36 360-395 263-305 (879)
477 PRK10421 DNA-binding transcrip 22.2 2.7E+02 0.0059 25.8 6.6 63 335-399 5-68 (253)
478 PRK00215 LexA repressor; Valid 22.1 1.4E+02 0.003 26.8 4.5 43 355-398 23-66 (205)
479 PRK09464 pdhR transcriptional 22.0 2E+02 0.0044 26.6 5.7 63 335-399 13-76 (254)
480 PF09202 Rio2_N: Rio2, N-termi 21.8 2.5E+02 0.0053 21.5 5.0 47 349-395 18-64 (82)
481 PRK12514 RNA polymerase sigma 21.8 1.9E+02 0.0042 25.0 5.2 28 353-380 143-170 (179)
482 TIGR02394 rpoS_proteo RNA poly 21.7 1.7E+02 0.0036 28.0 5.1 32 350-381 237-268 (285)
483 KOG2316 Predicted ATPase (PP-l 21.7 66 0.0014 29.6 2.1 64 350-414 117-188 (277)
484 KOG4648 Uncharacterized conser 21.7 1.8E+02 0.0038 28.9 5.0 57 141-209 102-158 (536)
485 PF09613 HrpB1_HrpK: Bacterial 21.6 5.5E+02 0.012 22.4 8.7 62 181-248 9-70 (160)
486 TIGR02561 HrpB1_HrpK type III 21.5 3.9E+02 0.0085 23.1 6.6 63 182-250 10-72 (153)
487 TIGR02366 DHAK_reg probable di 21.4 1E+02 0.0022 26.6 3.3 29 341-369 7-37 (176)
488 PRK15418 transcriptional regul 21.2 1.7E+02 0.0036 28.6 5.0 40 354-393 28-67 (318)
489 PF13613 HTH_Tnp_4: Helix-turn 21.1 1.6E+02 0.0036 20.0 3.6 28 353-380 17-44 (53)
490 PF14394 DUF4423: Domain of un 21.1 5.7E+02 0.012 22.4 9.5 43 357-399 41-89 (171)
491 COG1846 MarR Transcriptional r 21.1 2.9E+02 0.0062 21.6 5.8 36 359-394 40-75 (126)
492 TIGR01716 RGG_Cterm transcript 21.0 6E+02 0.013 22.7 11.8 122 96-225 90-211 (220)
493 KOG2581 26S proteasome regulat 21.0 9E+02 0.019 24.7 16.2 132 53-200 168-305 (493)
494 PRK06771 hypothetical protein; 21.0 67 0.0014 25.2 1.7 29 356-384 37-67 (93)
495 PF05470 eIF-3c_N: Eukaryotic 20.7 1.1E+03 0.023 25.4 20.4 66 18-84 221-296 (595)
496 PF07061 Swi5: Swi5; InterPro 20.7 4E+02 0.0086 20.4 7.4 61 310-370 16-82 (83)
497 PHA02591 hypothetical protein; 20.5 1E+02 0.0022 23.4 2.5 22 356-377 60-81 (83)
498 cd04762 HTH_MerR-trunc Helix-T 20.5 1E+02 0.0022 19.7 2.5 37 357-398 2-38 (49)
499 PF05920 Homeobox_KN: Homeobox 20.2 1.1E+02 0.0023 19.9 2.3 29 351-379 8-37 (40)
500 COG3280 TreY Maltooligosyl tre 20.2 73 0.0016 34.7 2.3 38 358-395 264-308 (889)
No 1
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-78 Score=543.75 Aligned_cols=410 Identities=69% Similarity=1.083 Sum_probs=395.2
Q ss_pred chhhHHHHHHhhcccCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhH
Q 014255 13 FTVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY 92 (428)
Q Consensus 13 ~~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~ 92 (428)
-.|.-.+-||++|+++.++|++|+..|+++++.++++++|+||+++|++++++..|+++++++.|+++++++++.+++++
T Consensus 24 pdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy 103 (440)
T KOG1464|consen 24 PDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY 103 (440)
T ss_pred CCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCC
Q 014255 93 SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (428)
Q Consensus 93 ~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~ 172 (428)
.+|+|+.|+|+++.+. +...+++||+++++.++.+.|+|+||+++.+|+++|++.|+|.+..+++.++++.|++.+|.
T Consensus 104 SEKsIN~IlDyiStS~--~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 104 SEKSINSILDYISTSK--NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 9999999999999754 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 173 DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 173 ~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
+|.+++..++|+|+.++++|...+|..+.+.+|.+|.-+.++++||.++|.|++|+|.+|+.+|.|.+|...|++||.+|
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHH
Q 014255 253 DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRN 332 (428)
Q Consensus 253 ~~~~~~~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~ 332 (428)
++.|+|++..||+|++|+.+|..+++|||++++++||.++|++-+|..|+.||.+.|+.+|+.++..++..++.|||+.+
T Consensus 262 DEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIRe 341 (440)
T KOG1464|consen 262 DESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKSNRSNIMDDPFIRE 341 (440)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhhccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCc-cchHHHHH
Q 014255 333 YIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK-GMKKYTAI 411 (428)
Q Consensus 333 ~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~-~~~~~~~l 411 (428)
|+.+|.++||.+.|+++++||++|.+++|++.+++|+.+||.+|+.+|.|..|+|+||++++.+...+... ....|..+
T Consensus 342 h~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~~~s~~k~~~al 421 (440)
T KOG1464|consen 342 HIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELNVPEADVESLLVSCILDDTIDGRIDEVNQYLELDKSKNSGSKLYKAL 421 (440)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCchhhHhhcCCCHHHHHHHHHHHHhccccccchHHhhhHhccCccCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987544 33569999
Q ss_pred HHHHHHHHHHHHh
Q 014255 412 DKWNSQLRKKRRD 424 (428)
Q Consensus 412 ~~w~~~v~~l~~~ 424 (428)
..|.+++++|...
T Consensus 422 ~kW~~ql~Sl~~~ 434 (440)
T KOG1464|consen 422 DKWNNQLKSLQSN 434 (440)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998654
No 2
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-63 Score=457.41 Aligned_cols=388 Identities=22% Similarity=0.363 Sum_probs=348.5
Q ss_pred HHhhcccCCCC-HHHHHHHHHHhhcCC--Cc----cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHH
Q 014255 21 SILEKGLVETD-PEGALAGFAEVVAME--PE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (428)
Q Consensus 21 ~~~ak~~~~~~-~~~Ai~~~~~ii~~~--~~----~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~ 93 (428)
..+|......+ .++++..|+.+++.. ++ ..+....++-+++++|.+.|+.+++.++++++++++ ..++|+++
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~-~~v~Kaka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFL-SSVSKAKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHhhhHHH
Confidence 77788887777 699999999999852 22 233456677778999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh-hhhhHHHHH--hHHHHHHHHhhccHHHHHHHHHHHHhhccCCC
Q 014255 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA-KNERLWFKT--NLKLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (428)
Q Consensus 94 ~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~-~~~kl~lr~--~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~ 170 (428)
+|+|+.+++.+..+|+. ....+++|.+|++|+ .++|.|+|. .-+|+.+|++.++|.+|+.++..+..++.+.
T Consensus 87 aKlvR~Lvd~~~~~~~~----~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl- 161 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDG----TGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL- 161 (411)
T ss_pred HHHHHHHHHHHccCCCC----cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999987762 347899999999998 466677755 4599999999999999998888877777765
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHH
Q 014255 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (428)
Q Consensus 171 ~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~-~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (428)
|| +..++++++.|++.|+.++|.+||++.++.|++.+|+++ +|.+||.+++++|++|+.++||++|++||||||
T Consensus 162 --DD---K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAf 236 (411)
T KOG1463|consen 162 --DD---KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAF 236 (411)
T ss_pred --cc---ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHH
Confidence 46 478999999999999999999999999999999999988 589999999999999999999999999999999
Q ss_pred Hhhhhhcc-hhHHHHHHHHHHHHHhhCCC--CC-CCCcccccccCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhc
Q 014255 250 KNYDEAGN-QRRIQCLKYLVLANMLMESE--VN-PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIM 325 (428)
Q Consensus 250 ~~~~~~~~-~~~~~~l~y~~L~~lL~~~~--~~-~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~ 325 (428)
++|+..++ .++...|+||+||+||.+.. ++ .+.++.+..|. +|.+++|+.+.+||.++++..|+.+|.+|+.++.
T Consensus 237 Egf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~-g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 237 EGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYA-GRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhcc-CcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 99999887 48999999999999987643 32 46677777776 6999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccc
Q 014255 326 DDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGM 405 (428)
Q Consensus 326 ~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~ 405 (428)
.||+++.|...|++++.++||+++++|||+|.+++||+.+|+|.+.||+.|++||.|+++.|.+||++||+++++.++.+
T Consensus 316 ~D~ivr~Hl~~Lyd~lLEknl~riIEPyS~Vei~hIA~~IGl~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~e~~~d 395 (411)
T KOG1463|consen 316 EDPIVRSHLQSLYDNLLEKNLCRIIEPYSRVEISHIAEVIGLDVPQVEKKLSQMILDKKFYGTLDQGEGCLIVFEEPPAD 395 (411)
T ss_pred cChHHHHHHHHHHHHHHHHhHHHHcCchhhhhHHHHHHHHCCCcHHHHHHHHHHHHHHHhhcccccCCCeEEEeCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 014255 406 KKYTAIDKWNSQLRK 420 (428)
Q Consensus 406 ~~~~~l~~w~~~v~~ 420 (428)
+.|++..+...++.+
T Consensus 396 ~~y~~aLetI~~m~k 410 (411)
T KOG1463|consen 396 NTYDAALETIQNMGK 410 (411)
T ss_pred hHHHHHHHHHHhccC
Confidence 999998887776643
No 3
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-54 Score=389.04 Aligned_cols=388 Identities=20% Similarity=0.311 Sum_probs=338.9
Q ss_pred Hhhccc-CCCCHHHHHHHHHHhhcCCCc----cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 014255 22 ILEKGL-VETDPEGALAGFAEVVAMEPE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (428)
Q Consensus 22 ~~ak~~-~~~~~~~Ai~~~~~ii~~~~~----~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (428)
..|... +..++++||..|++++.+..+ -.+....++-.+.++|...|++..+.++++++++.+ ..++|++++|+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m-~~ftk~k~~Ki 86 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM-EDFTKPKITKI 86 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH-HHhcchhHHHH
Confidence 334443 445699999999999998532 134467788899999999999999999999999999 88899999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh-hhhhHHHHH--hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCc
Q 014255 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEA-KNERLWFKT--NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD 173 (428)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~-~~~kl~lr~--~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~ 173 (428)
++.+++.++..|+ -...+++++-.+++|+ .++|.|+|. ..+++.++++.|+|.+|+.++..+..++.+. |
T Consensus 87 irtLiekf~~~~d----sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~---D 159 (421)
T COG5159 87 IRTLIEKFPYSSD----SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY---D 159 (421)
T ss_pred HHHHHHhcCCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh---c
Confidence 9999999987665 2567788888889998 466677755 4599999999999999997777776666554 4
Q ss_pred chhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 174 DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 174 d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~-p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
| +..++++|+.++++|++.+|.+++++.++.|++.++++++ |.++|.+++++|++|+.++||++|++||+|+|++|
T Consensus 160 D---K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 160 D---KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred C---ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 5 3678999999999999999999999999999999999875 78999999999999999999999999999999999
Q ss_pred hhhc-chhHHHHHHHHHHHHHhhCC--CCC-CCCcccccc-cCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCC
Q 014255 253 DEAG-NQRRIQCLKYLVLANMLMES--EVN-PFDGQEAKP-YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDD 327 (428)
Q Consensus 253 ~~~~-~~~~~~~l~y~~L~~lL~~~--~~~-~~~~~~~~~-~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D 327 (428)
+... +.++...|+||+|+.||.+. ++. .+.++.+.+ |. ++.+++|+.+.+||.++++..|..+|++|.+++..|
T Consensus 237 t~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~-~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D 315 (421)
T COG5159 237 TLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYD-DRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQD 315 (421)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhh-hhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccC
Confidence 8654 45788899999999998754 232 466666666 54 688999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchH
Q 014255 328 PFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKK 407 (428)
Q Consensus 328 ~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~ 407 (428)
|++..|++.|++.+.++||+++++||++|.+++||+.+|++...||..+++||.|+-+.|.+||++||+++.++++.+.+
T Consensus 316 ~~iRsHl~~LYD~LLe~Nl~kiiEPfs~VeishIa~viGldt~qvEgKLsqMILDKifyG~LDqg~gcLivy~ep~qd~t 395 (421)
T COG5159 316 SFIRSHLQYLYDVLLEKNLVKIIEPFSVVEISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYGEPAQDNT 395 (421)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcCcceeeehhHHHHHhcccHHHHHHHHHHHHHHHHHHhhhccCCceEEEeCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred HHHHHHHHHHHHHH
Q 014255 408 YTAIDKWNSQLRKK 421 (428)
Q Consensus 408 ~~~l~~w~~~v~~l 421 (428)
|+...+...+++..
T Consensus 396 yd~ale~v~~l~~v 409 (421)
T COG5159 396 YDEALEQVEALDCV 409 (421)
T ss_pred HHHHHHHHHHhhhH
Confidence 98877666665543
No 4
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-42 Score=325.20 Aligned_cols=384 Identities=14% Similarity=0.208 Sum_probs=327.0
Q ss_pred HHHHhhcccCCCCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 014255 19 LCSILEKGLVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (428)
Q Consensus 19 ~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (428)
...+.++++.+.+.++|++.+...-++.. ++.....|++..++++|+..++|+.+.+++..|.+. +.+.|++++++
T Consensus 15 e~~~~~~~la~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskk--rgqlk~ai~~M 92 (439)
T KOG1498|consen 15 ELLPKANNLAQIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKK--RGQLKQAIQSM 92 (439)
T ss_pred HhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--hhHHHHHHHHH
Confidence 34677888998899999999998855443 567778999999999999999999999999999987 56799999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHH-----HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCC
Q 014255 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (428)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~l-----r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~ 171 (428)
|++++.++...|+ .++...++++.+. ++++|+|+ |++..|++++++.|+..+|+++++++++++++
T Consensus 93 vq~~~~y~~~~~d--~~~k~~li~tLr~----VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETyg--- 163 (439)
T KOG1498|consen 93 VQQAMTYIDGTPD--LETKIKLIETLRT----VTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYG--- 163 (439)
T ss_pred HHHHHHhccCCCC--chhHHHHHHHHHH----hhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhh---
Confidence 9999999999887 6678887777655 68889988 88889999999999999999999999999984
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hh---hHHHHHHhhhHhHHhhhcHHHHHHHHHH
Q 014255 172 TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR---IMGIIRECGGKMHMAERQWADAATDFFE 247 (428)
Q Consensus 172 ~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~-p~---~~~~i~~~~g~~~~~~~~y~~A~~~f~e 247 (428)
+++ .+.++++++.++|+|+..+||.+|..+. ++++...++ |. +.-.++.....++.+++.|.+++++|..
T Consensus 164 sm~---~~ekV~fiLEQmrKOG~~~D~vra~i~s---kKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yra 237 (439)
T KOG1498|consen 164 SME---KSEKVAFILEQMRLCLLRLDYVRAQIIS---KKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRA 237 (439)
T ss_pred hhH---HHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 467 4889999999999999999999998774 555555543 43 3346667777888999999999999999
Q ss_pred HHHhhhhhcch-hHHHHHHHHHHHHHhhCCCCCCCCcccccccC---CCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHh
Q 014255 248 AFKNYDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQEAKPYK---NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKT 323 (428)
Q Consensus 248 a~~~~~~~~~~-~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~ 323 (428)
++.+.....+| .+..++.-.+...+|+ +.++.++...+... +..++|....+++.|.++.+..|...-+.+++.
T Consensus 238 iy~t~~vk~d~~kw~~vL~~iv~f~~LA--p~dneQsdll~~is~dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg~~ 315 (439)
T KOG1498|consen 238 IYDTGNVKEDPEKWIEVLRSIVSFCVLA--PHDNEQSDLLARISNDKKLSELPDYKELLKLFVTMELIRWVSLVESYGDE 315 (439)
T ss_pred HhcccccccChhhhhhhhhhheeEEeec--CCCcHHHHHHHHHhcccccccCccHHHHHHHHHhcceeeehhHhhhhHHH
Confidence 99988766655 6777887777767776 33344444444322 234678899999999999999999888888888
Q ss_pred hcCChhH------HHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEE
Q 014255 324 IMDDPFI------RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (428)
Q Consensus 324 l~~D~~l------~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (428)
+..+.++ ..||++|..+|.+||++.+.++||||++.++|+.+++|+++.|..|+.|+..|.+.||||+++|+|.
T Consensus 316 l~~~~~~~~~~~gek~~~dL~~RIiEHNiRiiA~yYSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKidrpsgII~ 395 (439)
T KOG1498|consen 316 LRTNDFFDGGEEGEKRWSDLKLRIIEHNIRIIAKYYSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKIDRPSGIIN 395 (439)
T ss_pred HhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEecCCCceEE
Confidence 8766443 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccchHHHHHHHHHHHHHHHHHh
Q 014255 398 RGDRSKGMKKYTAIDKWNSQLRKKRRD 424 (428)
Q Consensus 398 ~~~~~~~~~~~~~l~~w~~~v~~l~~~ 424 (428)
|..+. .+.+.|++|..++++|+.-
T Consensus 396 F~k~K---~~~~~LneW~~nve~L~~l 419 (439)
T KOG1498|consen 396 FQKVK---DSNEILNEWASNVEKLLGL 419 (439)
T ss_pred EEecc---cHHHHHHHHHhhHHHHHHH
Confidence 99876 6789999999999999763
No 5
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-35 Score=265.95 Aligned_cols=383 Identities=12% Similarity=0.166 Sum_probs=310.6
Q ss_pred HHHhhcccCCCCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 014255 20 CSILEKGLVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (428)
Q Consensus 20 ~~~~ak~~~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (428)
.+..-.++.+.|.+.|++.+...-.+.. ++.....+.+..++.+|+..|+|+.+.++...+.+. +.++|+.+.-||
T Consensus 16 ~~~~~~~l~~~d~~~~le~LL~~EkK~RqasD~~~~~kvl~~i~dLl~S~~~~~~Lneql~~L~kK--hGQlk~sI~~MI 93 (439)
T COG5071 16 LQKSLNNLNTIDIDANLEKLLIFEKKVRQASDTSTNTKVLIYIADLLFSAGDFQGLNEQLVSLFKK--HGQLKQSITSMI 93 (439)
T ss_pred HhhhhcchhhcchhhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHH--cchHHHHHHHHH
Confidence 3444567778888889888877655432 456667899999999999999999999999999887 457999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHH-----HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCC
Q 014255 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (428)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~l-----r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~ 172 (428)
.+++++...+.+ ..+...++++.+. ++++|+|+ |++-.|.+++.++|+..+|+++++++.++++++
T Consensus 94 q~vmEylKg~~d--l~t~i~~ietlr~----VtEgkIFvEvERariT~~L~~ikee~Gdi~sA~Dilcn~pVETygs--- 164 (439)
T COG5071 94 QHVMEYLKGIDD--LKTKINLIETLRT----VTEGKIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETYGS--- 164 (439)
T ss_pred HHHHHhccCccc--ccchHhHHHHHHH----HhcCceEEehhHHHHHHHHHHHHHHhcchhHHHHHHhcCchhhccc---
Confidence 999999987554 5567777776655 57788887 777799999999999999999999999999854
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-Chh---hHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 173 DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HPR---IMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 173 ~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~-~p~---~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
.+ -+.++.+++.+++++...+||.+|..+..+.++ ..+ .|. ..-.++..--.++++++.|.+|++|+.+.
T Consensus 165 ~~---~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~K---K~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~v 238 (439)
T COG5071 165 FD---LSEKVAFILEQVRLFLLRSDYYMASTYTKKINK---KFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAV 238 (439)
T ss_pred hh---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH---HHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHH
Confidence 45 378899999999999999999999888666543 322 233 33456666677899999999999999999
Q ss_pred HHhhhhhcch-hHHHHHHHHHHHHHhhCCCCCCCCcccccccCCC---cchHHHHHHHHHHhhCCHHHHHHHHHHhHHhh
Q 014255 249 FKNYDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQEAKPYKND---PEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324 (428)
Q Consensus 249 ~~~~~~~~~~-~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l 324 (428)
|.+....+++ .+..+|...+..++|+ +.++..+...++..++ ...+....++.+|....+..|...-..+++.+
T Consensus 239 Y~t~~~~~d~Akwk~VLS~~v~F~iLt--py~neq~dlvhKi~~d~kl~sl~~~~~lVk~f~vNelmrwp~V~~~y~~~l 316 (439)
T COG5071 239 YDTAVVQEDPAKWKEVLSNVVCFALLT--PYDNEQADLLHKINADHKLNSLPLLQQLVKCFIVNELMRWPKVAEIYGSAL 316 (439)
T ss_pred HHHHHhccCcccccchhhcceeeEEec--ccccHHHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHhhhHHHHHhHHHH
Confidence 9988777765 6767776665556665 2323333333332211 23455678899999999999998888888887
Q ss_pred cCChh-H-----HHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 325 MDDPF-I-----RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 325 ~~D~~-l-----~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
..|.+ | ..||++|..++.+||++.+.+.||||+..+|...+++|+++.|..++.|+..|-+.|+|+|+.|+|.|
T Consensus 317 ~~~~faF~~e~~~~~w~DL~krviEHN~RvI~~yYSrI~~~rl~~lld~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~F 396 (439)
T COG5071 317 RSNVFAFNDEKGEKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLDMSPSETEQFISDLVNKGHFYAKINRPAQIISF 396 (439)
T ss_pred HhhhhhhccchhhhhHHHHHHHHHHhhHhHHHHHhhhhhHHHHHHHHcCCHHHHHHHHHHHHhcCcEEEEecCccceEEe
Confidence 76633 2 47999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHh
Q 014255 399 GDRSKGMKKYTAIDKWNSQLRKKRRD 424 (428)
Q Consensus 399 ~~~~~~~~~~~~l~~w~~~v~~l~~~ 424 (428)
..+. ...+.|++|.++|..|++.
T Consensus 397 EK~~---n~~~~lneW~~NV~ellgk 419 (439)
T COG5071 397 EKSQ---NVQEQLNEWGSNVTELLGK 419 (439)
T ss_pred eccc---cHHHHHHHhcccHHHHHHH
Confidence 8876 5678999999999998864
No 6
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-29 Score=229.69 Aligned_cols=276 Identities=15% Similarity=0.227 Sum_probs=244.3
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
...++.|..|.+.||-+.|.+.+.+.-..+.. -..++++.+..+|+-+.-+|..-....+++|+.+...-.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs---------~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVS---------LGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh---------cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 44668999999999999999999998887643 257899999999998888888888888888888877777
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCC----CCCcccccccCCC
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVN----PFDGQEAKPYKND 292 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~----~~~~~~~~~~~~~ 292 (428)
|+.-..+++.+.|++.+..+||++|+..|.++..+|.+.+......+..|+++|++++-++.+ ..++++.....
T Consensus 176 DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~~~Evl~vl-- 253 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKVIKCPEVLEVL-- 253 (393)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhhcCcHHHHHHh--
Confidence 888889999999999999999999999999999999888877888899999999998755433 45666555433
Q ss_pred cchHHHHHHHHHHhhCCHHHHHHHHHH-hHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHH
Q 014255 293 PEILAMTNLIAAYQRNEIIEFEKILKS-NRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKD 371 (428)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~-~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~ 371 (428)
+.++.+..++.++..+++..|...|.. ....+..|-++.+|.+.+.+.+|.++..|+++||++++++.||+.||++++.
T Consensus 254 ~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLESYrsl~l~~MA~aFgVSVef 333 (393)
T KOG0687|consen 254 HKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLESYRSLTLESMAKAFGVSVEF 333 (393)
T ss_pred hcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 447788899999999999999988855 4788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHH----HHHHHHHHHHH
Q 014255 372 VEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAID----KWNSQLRKKRR 423 (428)
Q Consensus 372 vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~----~w~~~v~~l~~ 423 (428)
++..|+++|.+|+++|+||+++|+|+.++|+..+..|+... ...++|+++.+
T Consensus 334 iDreL~rFI~~grL~ckIDrVnGVVEtNrpD~KN~qyq~vikqGd~LLnriQK~~r 389 (393)
T KOG0687|consen 334 IDRELGRFIAAGRLHCKIDRVNGVVETNRPDEKNAQYQAVIKQGDLLLNRIQKLSR 389 (393)
T ss_pred HHhHHHHhhccCceeeeeecccceeecCCccccchHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888776 48899999876
No 7
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.5e-26 Score=211.68 Aligned_cols=304 Identities=17% Similarity=0.270 Sum_probs=243.7
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHH
Q 014255 68 GKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF 147 (428)
Q Consensus 68 ~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~ 147 (428)
...+.++++|..+...+++++++-.+.++.-.+.+.+++ .....++.+.+.+.++...+.--..++....|.+++
T Consensus 52 ~~~~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~D-----~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L 126 (380)
T KOG2908|consen 52 QAGDLLLQLYLNFVSEFETKINPLSLVEILLVVSEQISD-----KDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKL 126 (380)
T ss_pred ccchHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999874 234566777777766654332234455558889999
Q ss_pred hhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHh
Q 014255 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (428)
Q Consensus 148 ~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~ 227 (428)
..||.+++.+.|.+.++.+...++++ .....-+|..-+++|-..||++. +|+.|....+-
T Consensus 127 ~i~DLk~~kk~ldd~~~~ld~~~~v~----~~Vh~~fY~lssqYyk~~~d~a~---yYr~~L~YL~~------------- 186 (380)
T KOG2908|consen 127 EINDLKEIKKLLDDLKSMLDSLDGVT----SNVHSSFYSLSSQYYKKIGDFAS---YYRHALLYLGC------------- 186 (380)
T ss_pred hcccHHHHHHHHHHHHHHHhcccCCC----hhhhhhHHHHHHHHHHHHHhHHH---HHHHHHHHhcc-------------
Confidence 99999999999999999888776653 25667788888888888887765 55544321110
Q ss_pred hhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccC---CCcchHHHHHHHHH
Q 014255 228 GGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYK---NDPEILAMTNLIAA 304 (428)
Q Consensus 228 ~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~a 304 (428)
..-+.....++.+.+..++++++| ++.+.+|+...+||.. .++..+|+.+++.|
T Consensus 187 ----------------------~d~~~l~~se~~~lA~~L~~aALL-Ge~iyNfGELL~HPilesL~gT~~eWL~dll~A 243 (380)
T KOG2908|consen 187 ----------------------SDIDDLSESEKQDLAFDLSLAALL-GENIYNFGELLAHPILESLKGTNREWLKDLLIA 243 (380)
T ss_pred ----------------------ccccccCHHHHHHHHHHHHHHHHh-ccccccHHHHHhhHHHHHhcCCcHHHHHHHHHH
Confidence 001112224566667789999998 5567789988888843 25788999999999
Q ss_pred HhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhh--cc--ccccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 305 YQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLI--KP--YTRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 305 f~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~--~p--Ys~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
|+.||+..|++.... +..-|.|++|...|.++++..+|+.++ +| -++|||+.||+.+.+|.++||.+||+++
T Consensus 244 fn~Gdl~~f~~l~~~----~~~~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE~LVMKAl 319 (380)
T KOG2908|consen 244 FNSGDLKRFESLKGV----WGKQPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEVELLVMKAL 319 (380)
T ss_pred hccCCHHHHHHHHHH----hccCchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999987665 456899999999999999999999885 66 5899999999999999999999999999
Q ss_pred HcCceeEEEecCCCEEEEccCC-------ccchHHHHHHHHHHHHHHHHH
Q 014255 381 LDNRIDGHIDQVNRLLERGDRS-------KGMKKYTAIDKWNSQLRKKRR 423 (428)
Q Consensus 381 ~~g~i~g~IDq~~g~v~~~~~~-------~~~~~~~~l~~w~~~v~~l~~ 423 (428)
+.|.|+|.||+++|+|++.|.. |+..|.+++..|.++|+++..
T Consensus 320 slgLikG~Idqv~~~v~~swvqPRvl~~~qI~~Mk~rl~~W~~~v~~me~ 369 (380)
T KOG2908|consen 320 SLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIVKMKDRLDEWNKDVKSMEG 369 (380)
T ss_pred hccceeeeecccccEEEEecccccccCHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999754 455789999999999998753
No 8
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.5e-26 Score=220.02 Aligned_cols=266 Identities=16% Similarity=0.243 Sum_probs=223.4
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI- 215 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i- 215 (428)
+....|+.+|.+.|+++.|.+.+...+..|+.. .+.+.+++.-+++...+|||.+.-.+..+|.....+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 445589999999999999999999999999852 5789999999999999999999998888887553221
Q ss_pred -CChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH-HHhhh--hhcchhHHHHHHHHHHHHHhhCCC----CCCCCccccc
Q 014255 216 -PHPRIMGIIRECGGKMHMAERQWADAATDFFEA-FKNYD--EAGNQRRIQCLKYLVLANMLMESE----VNPFDGQEAK 287 (428)
Q Consensus 216 -~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea-~~~~~--~~~~~~~~~~l~y~~L~~lL~~~~----~~~~~~~~~~ 287 (428)
..+.+.+.++...|..++..++|+.|+++|..+ +..++ ... ...++..|.+||+|-+-+. .+..++..+.
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~iv--tpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk 299 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIV--TPSDVAIYGGLCALATFDRQDLKLNVIKNESFK 299 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccee--cchhhHHHHhhHhhccCCHHHHHHHHHcchhhh
Confidence 113445678999999999999999999999998 33333 222 2346677999999965332 1234455566
Q ss_pred ccCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCC
Q 014255 288 PYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV 367 (428)
Q Consensus 288 ~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l 367 (428)
.+. .-.|.+++++..|.++.+..|.++|.+.++.+..|+++++|++.|+..||.++++++..||+++.++.||..|+.
T Consensus 300 ~fl--el~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~~ 377 (466)
T KOG0686|consen 300 LFL--ELEPQLREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFNT 377 (466)
T ss_pred hHH--hcChHHHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhcc
Confidence 665 234668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHHHHH
Q 014255 368 PEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWN 415 (428)
Q Consensus 368 ~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~ 415 (428)
++...|..|.++|.+|+|.|+||+.+++|.+.+.+++++.+++....+
T Consensus 378 sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~~~~~~en~~fe~~~~~~ 425 (466)
T KOG0686|consen 378 SVAILESELLELILEGKISGRIDSHNKILYARDADSENATFERVLPMG 425 (466)
T ss_pred cHHHHHHHHHHHHHccchheeeccccceeeecccccccchhhhcchhh
Confidence 999999999999999999999999999999999988888877765433
No 9
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-24 Score=198.36 Aligned_cols=348 Identities=15% Similarity=0.199 Sum_probs=263.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
.|+++.+-.+..+ ..+.-+|+-+.+.-.+. +.+.+-|.=+..++.+-+ .+.+...++-+.+.+.-+. |+.
T Consensus 42 ~ka~e~l~~~i~d----~~maplYkyL~E~~n~k-t~a~~ikfD~~~~n~l~k---kneeki~Elde~i~~~eed--ngE 111 (412)
T COG5187 42 SKALEHLERLIID----KCMAPLYKYLAEKGNPK-TSASVIKFDRGRMNTLLK---KNEEKIEELDERIREKEED--NGE 111 (412)
T ss_pred hHHHHHHHHHHHH----hhhhHHHHHHHhccCCc-ccchheehhhHHHHHHHH---hhHHHHHHHHHHHHHHhhc--ccc
Confidence 4566665544444 23344555554432121 222223333444444333 1233444444444332211 223
Q ss_pred HH-HHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 134 LW-FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 134 l~-lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.. .....++|.+|.+.+|.+.+.+.+.++-..-.. ...++++.+..+++-+.-||..-..+.++.+..+.
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s---------tg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~i 182 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS---------TGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDII 182 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---------cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 32 255679999999999999999999888765321 25789999999999999999888888888887777
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCC----CCCcccccc
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVN----PFDGQEAKP 288 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~----~~~~~~~~~ 288 (428)
..-.++.-..+++.+.|++.+..++|++|+..|.++..+|...+......+.+|+++|.+++-+..+ .+++++...
T Consensus 183 EkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~ 262 (412)
T COG5187 183 EKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLD 262 (412)
T ss_pred HhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHH
Confidence 7777888889999999999999999999999999999999888877888899999999998755432 477776554
Q ss_pred cCC-CcchHHHHHHHHHHhhCCHH-HHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhC
Q 014255 289 YKN-DPEILAMTNLIAAYQRNEII-EFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN 366 (428)
Q Consensus 289 ~~~-~~~~~~l~~L~~af~~~dl~-~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~ 366 (428)
... ...+..+..++.+...+|+. -|...+.-+.+.+..|.|+..|++.+.+.+|.++..|++++|+.++++.||+.||
T Consensus 263 vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvREMRrrvYaQlLESYr~lsl~sMA~tFg 342 (412)
T COG5187 263 VIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVREMRRRVYAQLLESYRLLSLESMAQTFG 342 (412)
T ss_pred hccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 331 22345566788888999999 5677788888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHH----HHHHHHHH
Q 014255 367 VPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAID----KWNSQLRK 420 (428)
Q Consensus 367 l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~----~w~~~v~~ 420 (428)
++++-++.-|.+.|-+|++++.||+++|+|..++|+..+..|..+. ...+++++
T Consensus 343 VSV~yvdrDLg~FIp~~~LncvIDRvnGvVetnrpdekn~qy~~vVkqGd~ll~klqK 400 (412)
T COG5187 343 VSVEYVDRDLGEFIPEGRLNCVIDRVNGVVETNRPDEKNQQYSSVVKQGDDLLRKLQK 400 (412)
T ss_pred ccHHHHhhhHHhhCCCCceeeeeecccceEeccCcchhhhhHHHHHhcchHHHHHHHH
Confidence 9999999999999999999999999999999999988777776655 34444444
No 10
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=7.9e-24 Score=195.41 Aligned_cols=335 Identities=19% Similarity=0.249 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHHHHHHh--hhhhHHHHHhHHHHHHHHh
Q 014255 72 EMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG-SASQNFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFD 148 (428)
Q Consensus 72 ~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~-~~~~~~~~~~~~~~~~le~l~~~--~~~kl~lr~~~~La~l~~~ 148 (428)
+++|..+.++... ++.+-..+.-++++..+.. .+..+.+..++.++-+++.++.. ..+--.+.+..+||.+|+.
T Consensus 39 el~e~~k~~id~~---~~~~vslvvsrqllsl~~~~l~~l~~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~ 115 (399)
T KOG1497|consen 39 ELLEALKRFIDAI---VNENVSLVVSRQLLSLFDVELSILEDELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEK 115 (399)
T ss_pred HHHHHHHHHHHHH---HcCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 4555555454433 3333344444455544432 12234678899999999988863 2222334566799999999
Q ss_pred hccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhh
Q 014255 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 228 (428)
Q Consensus 149 ~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~ 228 (428)
.++|..|...|..+...+-.- ..+ -..++..++.++++|+..+|...|..+.+++.-......+|.++-.++.|.
T Consensus 116 Eq~~~~aaq~L~~I~~~tg~~-~~d----~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ 190 (399)
T KOG1497|consen 116 EQNWRDAAQVLVGIPLDTGQK-AYD----VEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCY 190 (399)
T ss_pred hhhHHHHHHHHhccCcccchh-hhh----hHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH
Confidence 999999999999888775110 112 257888999999999999999999999998865555556788999999999
Q ss_pred hHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccc-cccCCCc---chHHHHHHHHH
Q 014255 229 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEA-KPYKNDP---EILAMTNLIAA 304 (428)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~~~~~~~~-~~~~~~~---~~~~l~~L~~a 304 (428)
+++....|+|.+|+..||+... +.......+..+|+..+.|.+|.... |-.++.. ..|+ +| .++.+--+.+.
T Consensus 191 ARvlD~krkFlEAAqrYyels~-~ki~~e~~~~~aL~~a~~CtlLA~~g--pqrsr~Latlfk-der~~~l~~y~ileKm 266 (399)
T KOG1497|consen 191 ARVLDYKRKFLEAAQRYYELSQ-RKIVDESERLEALKKALQCTLLASAG--PQRSRMLATLFK-DERCQKLPAYGILEKM 266 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHhHhheeecCCC--hHHHHHHHHHhc-CcccccccchHHHHHH
Confidence 9999999999999999998733 22334457888999999999987432 3223211 1232 22 33444333333
Q ss_pred -----HhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHH
Q 014255 305 -----YQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSL 379 (428)
Q Consensus 305 -----f~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~l 379 (428)
....++..|...|..|+..-..|. ...+-+.+.+|||+..++-|..|+|+.++..|++|++.+|+..++|
T Consensus 267 yl~riI~k~el~ef~~~L~pHQka~~~dg-----ssil~ra~~EhNlls~Skly~nisf~~Lg~ll~i~~ekaekiaa~M 341 (399)
T KOG1497|consen 267 YLERIIRKEELQEFEAFLQPHQKAHTMDG-----SSILDRAVIEHNLLSASKLYNNISFEELGALLKIDAEKAEKIAAQM 341 (399)
T ss_pred HHHHHhcchhHHHHHHHhcchhhhcccCc-----chhhhhHHHHHhHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHH
Confidence 356678899998888876543443 2456788899999999999999999999999999999999999999
Q ss_pred HHcCceeEEEecCCCEEEEccCCccchHHHHHHHHHHHHHHHHH
Q 014255 380 ILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRKKRR 423 (428)
Q Consensus 380 I~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~ 423 (428)
|..|+++|.|||.+|+|+|.+......--.++...++.|+++++
T Consensus 342 I~qeRmng~IDQ~egiihFe~~e~l~~wdkqi~sl~~qvNki~~ 385 (399)
T KOG1497|consen 342 ITQERMNGSIDQIEGIIHFEDREELPQWDKQIQSLCNQVNKILD 385 (399)
T ss_pred HhHHHhccchHhhcceEeecchhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999998743221113444455555555554
No 11
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.79 E-value=8.7e-19 Score=142.80 Aligned_cols=105 Identities=33% Similarity=0.626 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHH
Q 014255 296 LAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQL 375 (428)
Q Consensus 296 ~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~ 375 (428)
||+.+|+++|.++++..|.+.++.+...+..|+++..|++.+.+.++.+++.+++++|++|++++||+.++++.++||.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~~~~vE~~ 80 (105)
T PF01399_consen 1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLSEEEVESI 80 (105)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccchHHHHHH
Confidence 57899999999999999999999997778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCceeEEEecCCCEEEEcc
Q 014255 376 LVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 376 l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
|++||.+|.|+|+|||++|+|+|.+
T Consensus 81 l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 81 LIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp HHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred HHHHHHCCCEEEEEECCCCEEEecC
Confidence 9999999999999999999999974
No 12
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4e-17 Score=155.72 Aligned_cols=247 Identities=19% Similarity=0.262 Sum_probs=177.0
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
++..-+...|+..|+...-..++.....--+- +-++.. ...++.. .-+.|+.-+-|.+|..+..++ ..+
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL--rhd~e~-qavLiN~---LLr~yL~n~lydqa~~lvsK~-----~~p 238 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATL--RHDEEG-QAVLINL---LLRNYLHNKLYDQADKLVSKS-----VYP 238 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh--cCcchh-HHHHHHH---HHHHHhhhHHHHHHHHHhhcc-----cCc
Confidence 44444555666667665555444443332111 101110 1122222 224566655555554443221 112
Q ss_pred C---hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHHHhhCCCCC--CCCcccccccC
Q 014255 217 H---PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD-EAGNQRRIQCLKYLVLANMLMESEVN--PFDGQEAKPYK 290 (428)
Q Consensus 217 ~---p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~-~~~~~~~~~~l~y~~L~~lL~~~~~~--~~~~~~~~~~~ 290 (428)
+ ....+++..+.|++.+.+.+|.+|.++|..|...-+ +...+..+++-+.+++..+|.++..+ .|..+..+
T Consensus 239 e~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~--- 315 (493)
T KOG2581|consen 239 EAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR--- 315 (493)
T ss_pred cccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH---
Confidence 2 346789999999999999999999999999987554 44445778888999999999876432 34333222
Q ss_pred CCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCC-h
Q 014255 291 NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVP-E 369 (428)
Q Consensus 291 ~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~-~ 369 (428)
..+.++..|.+|...+|+..|++.++++++.|..|..+. -+-.|+.+++.-+++.|.-.||||++.+||+.|+++ +
T Consensus 316 --ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~-LivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Se 392 (493)
T KOG2581|consen 316 --KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT-LIVRLRHNVIKTGIRKISLSYSRISLQDIAKKLGLNSE 392 (493)
T ss_pred --HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHhhhheeeeeeeccHHHHHHHhcCCCc
Confidence 246678899999999999999999999999999998653 345788899999999999999999999999999996 5
Q ss_pred HHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 370 KDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 370 ~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
+++|.+|+++|+||.|+|+||+.+|++...+
T Consensus 393 ed~EyiVakAIRDGvIea~Id~~~g~m~skE 423 (493)
T KOG2581|consen 393 EDAEYIVAKAIRDGVIEAKIDHEDGFMQSKE 423 (493)
T ss_pred hhHHHHHHHHHHhccceeeeccccCceehhh
Confidence 5699999999999999999999999887763
No 13
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.1e-16 Score=148.41 Aligned_cols=260 Identities=19% Similarity=0.223 Sum_probs=191.7
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHH---HHHhhcCHHHHHHHHHHHHhhhc
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ---MYTETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~---l~~~~~d~~ka~~~l~~a~~~~~ 213 (428)
.+.+++|++.+++|+|..|..+|.-.+..+..+ |+...+.++.-++.++- +-.++.|..+.+++++..
T Consensus 130 ~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~----d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~----- 200 (432)
T KOG2758|consen 130 ETLYKYAKFQYECGNYSGASDYLYFYRALVSDP----DRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSK----- 200 (432)
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHhcCCc----chhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccc-----
Confidence 556799999999999999999999999999875 32113445555555543 344555666666665432
Q ss_pred cCCC--hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH---hhhhhcchhHHHHHHHHHHHHHhhCCCC-CC------C
Q 014255 214 AIPH--PRIMGIIRECGGKMHMAERQWADAATDFFEAFK---NYDEAGNQRRIQCLKYLVLANMLMESEV-NP------F 281 (428)
Q Consensus 214 ~i~~--p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~---~~~~~~~~~~~~~l~y~~L~~lL~~~~~-~~------~ 281 (428)
.... ..++.+-|+..+.++. -=++..++....+.|- .|-++....+...++|+..+.+...+.. +. .
T Consensus 201 ~f~~~~~~l~qRtWLiHWslfv-~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkV 279 (432)
T KOG2758|consen 201 SFSTSAQQLQQRTWLIHWSLFV-FFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKV 279 (432)
T ss_pred ccccHHHHHHHHHHHHHHHHHh-hccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHH
Confidence 1112 2345566665554332 1245556666677664 2445566677889999999888652221 11 2
Q ss_pred CcccccccCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhH
Q 014255 282 DGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFI 361 (428)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~i 361 (428)
-+++...|+ ||-.+.+.. .|.+.|+....+.|.+++..+.+|+|+....+++.+..|....--+.+-.++|+++-+
T Consensus 280 IqqE~ysYk-DPiteFl~c---lyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ARl~ifEtfCRIHqcIti~mL 355 (432)
T KOG2758|consen 280 IQQESYSYK-DPITEFLEC---LYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLENARLLIFETFCRIHQCITIDML 355 (432)
T ss_pred HHHhccccC-CcHHHHHHH---HhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHheeHHHH
Confidence 245666676 677665544 4889999999999999999999999999999999999987777777777899999999
Q ss_pred HhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHH
Q 014255 362 SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAID 412 (428)
Q Consensus 362 A~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~ 412 (428)
|..++++.+++|.+++++|++.+|+|+||...|.|++..++. ..++++.
T Consensus 356 A~kLnm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~--s~~qQ~i 404 (432)
T KOG2758|consen 356 ADKLNMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTV--SPHQQLI 404 (432)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCC--CHHHHHH
Confidence 999999999999999999999999999999999999987653 4455554
No 14
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=99.57 E-value=1.4e-14 Score=114.30 Aligned_cols=86 Identities=28% Similarity=0.458 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHH
Q 014255 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAI 411 (428)
Q Consensus 332 ~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l 411 (428)
+|++.+.++++.+++.++++||++|++++||+.+++|.+++|.+|++||.+|.|+|+|||.+|+|.+.+.+++. .+.+
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~--~~~~ 78 (88)
T smart00088 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR--SEPL 78 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh--hhHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999887653 3445
Q ss_pred HHHHHHHH
Q 014255 412 DKWNSQLR 419 (428)
Q Consensus 412 ~~w~~~v~ 419 (428)
..|.+.+.
T Consensus 79 ~~~~~~l~ 86 (88)
T smart00088 79 AQFAETLK 86 (88)
T ss_pred HHHHHHhh
Confidence 55555543
No 15
>smart00753 PAM PCI/PINT associated module.
Probab=99.57 E-value=1.4e-14 Score=114.30 Aligned_cols=86 Identities=28% Similarity=0.458 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHH
Q 014255 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAI 411 (428)
Q Consensus 332 ~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l 411 (428)
+|++.+.++++.+++.++++||++|++++||+.+++|.+++|.+|++||.+|.|+|+|||.+|+|.+.+.+++. .+.+
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~--~~~~ 78 (88)
T smart00753 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR--SEPL 78 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh--hhHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999887653 3445
Q ss_pred HHHHHHHH
Q 014255 412 DKWNSQLR 419 (428)
Q Consensus 412 ~~w~~~v~ 419 (428)
..|.+.+.
T Consensus 79 ~~~~~~l~ 86 (88)
T smart00753 79 AQFAETLK 86 (88)
T ss_pred HHHHHHhh
Confidence 55555543
No 16
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.49 E-value=3.4e-11 Score=114.19 Aligned_cols=272 Identities=15% Similarity=0.203 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHhhhhhHH------HHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHH
Q 014255 117 EFYQTTLKALEEAKNERLW------FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (428)
Q Consensus 117 ~~~~~~le~l~~~~~~kl~------lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~ 190 (428)
..++....-++.++.+-+. +.+...++....+.++..--..++.......+... ..+..++.....
T Consensus 77 ~li~~~~~FV~~~n~eqlr~as~~f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~--------~qlT~~H~~l~~ 148 (422)
T KOG2582|consen 77 TLIELLNDFVDENNGEQLRLASEIFFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSN--------GQLTSIHADLLQ 148 (422)
T ss_pred HHHHHHHHHHHhcChHHHhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCc--------cchhhhHHHHHH
Confidence 3444444555555444432 24444566665555443333344444333333211 245566666667
Q ss_pred HHHhhcCHHHHHHHHHHHH---hhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHH-HH
Q 014255 191 MYTETKNNKKLKQLYQKAL---AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL-KY 266 (428)
Q Consensus 191 l~~~~~d~~ka~~~l~~a~---~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l-~y 266 (428)
.++..+++.-+-.+++.-. .-.++-.+|++.-.+..++|.++...+||..|.-.|+.+..++...-+....++. +|
T Consensus 149 ~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkky 228 (422)
T KOG2582|consen 149 LCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKY 228 (422)
T ss_pred HHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 7888888765544433211 1113334677777788899999999999999998887777666544444444554 46
Q ss_pred HHHHHHhhCCCC--CCCCcccccccCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHH
Q 014255 267 LVLANMLMESEV--NPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQ 344 (428)
Q Consensus 267 ~~L~~lL~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~ 344 (428)
++++-|+.|.-. +.-.++.+.++.+ |-.+++.+++++|.++.-.+...++.++...|..|.... .+......+-.+
T Consensus 229 lLvsLI~~GK~~ql~k~ts~~~~r~~K-~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~-l~k~av~sl~k~ 306 (422)
T KOG2582|consen 229 LLVSLILTGKVFQLPKNTSQNAGRFFK-PMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTG-LAKQAVSSLYKK 306 (422)
T ss_pred HHHHhhhcCceeeccccchhhhHHhcc-cCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHH
Confidence 666666666532 2233455555543 556688999999999999999999999999999997643 245566777788
Q ss_pred HHHHhhccccccchhhHHhHhCC-ChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 345 VLLKLIKPYTRIRIPFISKELNV-PEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l-~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
+|.++.+.|+++++++||++..+ +.++||+.|.+||.+|.|.+.|| |.|.|.+.
T Consensus 307 nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN---G~v~f~~n 361 (422)
T KOG2582|consen 307 NIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASIN---GMVFFTDN 361 (422)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEec---ceEEEecC
Confidence 99999999999999999998888 57899999999999999999999 99999864
No 17
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=99.32 E-value=7.4e-11 Score=105.19 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=114.8
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
+....+|.+|.+.||+++|.+.+.+.+..|..+ ..++++++..+++.+..+|+..+..++.++........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~---------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSP---------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 345699999999999999999999999998742 67899999999999999999999999999998887766
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh---hcchhHHHHHHHHHHHHHhh
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE---AGNQRRIQCLKYLVLANMLM 274 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~---~~~~~~~~~l~y~~L~~lL~ 274 (428)
++...++++.+.|+.++..|+|+.|++.|.++..+|.. .+.....++..|.+||++++
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat 168 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALAT 168 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999999887754 44446668899999999986
No 18
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=99.12 E-value=3e-08 Score=93.22 Aligned_cols=183 Identities=17% Similarity=0.261 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcchHHHHHHHHHHhhCCHHHHHHHHHH
Q 014255 240 DAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKS 319 (428)
Q Consensus 240 ~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~ 319 (428)
.+.+-|.+-..+|.+..-..+..-+.-.+.-++-++ .+-.|+..+..|-...-+-..+..|+..|.++.+..+.+..+.
T Consensus 183 ~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP-~~F~fD~Ll~L~pV~qLE~d~i~qLL~IF~s~~L~aYveF~~~ 261 (378)
T KOG2753|consen 183 ESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKDP-KIFLFDHLLTLPPVKQLEGDLIHQLLKIFVSGKLDAYVEFVAA 261 (378)
T ss_pred hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCC-ceeccchhccCchHHHhccchHHHHHHHHHhcchHHHHHHHHh
Confidence 334444444455654432333333334444444322 2223444444331100122237889999999999999888887
Q ss_pred hHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 320 NRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 320 ~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+...+....... +....++|..-++.+.++-..|++..|++.+++.++|||-+|.+.|..|.+.|+|||.++.|+++
T Consensus 262 N~~Fvqs~gl~~---E~~~~KMRLLTlm~LA~es~eisy~~l~k~LqI~edeVE~fVIdaI~aklV~~kidq~~~~viVs 338 (378)
T KOG2753|consen 262 NSGFVQSQGLVH---EQNMAKMRLLTLMSLAEESNEISYDTLAKELQINEDEVELFVIDAIRAKLVEGKIDQMNRTVIVS 338 (378)
T ss_pred ChHHHHHhcccH---HHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhHHhhcceEEee
Confidence 766555444433 36789999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC-------ccchHHHHHHHHH-HHHHHHHHhhh
Q 014255 400 DRS-------KGMKKYTAIDKWN-SQLRKKRRDNQ 426 (428)
Q Consensus 400 ~~~-------~~~~~~~~l~~w~-~~v~~l~~~~~ 426 (428)
... |-..++++|..|. .+++.+-..+|
T Consensus 339 ~~~hR~FG~~qW~~L~~kL~aw~k~~~stv~~~l~ 373 (378)
T KOG2753|consen 339 SSTHRTFGKQQWQQLRDKLAAWGKQNLSTVRENLQ 373 (378)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHhhhhHHHHHHhh
Confidence 643 3336788899995 44444444333
No 19
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=99.02 E-value=1.6e-07 Score=90.04 Aligned_cols=249 Identities=16% Similarity=0.203 Sum_probs=158.9
Q ss_pred hccHHHHHHHHHHHHhhccCCCCC-cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh-ccCCC-hh-hHHHH
Q 014255 149 MGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK-SAIPH-PR-IMGII 224 (428)
Q Consensus 149 ~g~~~~A~~~l~el~~~~~~~~~~-~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~-~~i~~-p~-~~~~i 224 (428)
.....++.+++...-..|-..-+- -.+.++....-+--....+|+++++..-++..++..+... .++.. +. -+-.+
T Consensus 143 ~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f 222 (413)
T COG5600 143 QDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVF 222 (413)
T ss_pred HhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeeh
Confidence 345677788888888777543221 1111111111122234578999999998887776543211 11111 11 12356
Q ss_pred HHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcchHHHHHHHHH
Q 014255 225 RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAA 304 (428)
Q Consensus 225 ~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~a 304 (428)
..+-|++|+...++.+|+-+|-+||.............++-|++..++|.+.-. |... ...++ +....+.-|+++
T Consensus 223 ~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~~-Ptk~-~L~r~---~~~s~~~~Lvka 297 (413)
T COG5600 223 HYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFP-PTKD-LLERF---KRCSVYSPLVKA 297 (413)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCCC-CchH-HHHhc---cccchhHHHHHH
Confidence 688899999999999999999999987655444455567788888888765432 2111 11122 224566778999
Q ss_pred HhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHh-h---ccccc--cchhhHHhHhCC-----ChHHHH
Q 014255 305 YQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKL-I---KPYTR--IRIPFISKELNV-----PEKDVE 373 (428)
Q Consensus 305 f~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~-~---~pYs~--I~l~~iA~~l~l-----~~~~vE 373 (428)
...|++..|...+++++..|.+-... --+...++-+.-+|+.+= . .--++ +++-.++..+.. +.++||
T Consensus 298 vrsGni~~~~~~l~~ner~~~~~~l~-ltl~~~~~~V~~RNL~rk~w~~~~~qsrlp~sil~~~~qls~~dn~~~~~~VE 376 (413)
T COG5600 298 VRSGNIEDFDLALSRNERKFAKRGLY-LTLLAHYPLVCFRNLFRKIWRLHGKQSRLPLSILLIVLQLSAIDNFHSFKEVE 376 (413)
T ss_pred HHcCCHHHHHHHHHHhHHHHHHcchH-HHHHhhccHHHHHHHHHHHHhhccccccCcHHHHHHHHHccCCCcccChHHHH
Confidence 99999999999999988655443321 112222344444555441 1 11134 455556666554 268999
Q ss_pred HHHHHHHHcCceeEEEecCCCEEEEccCCc
Q 014255 374 QLLVSLILDNRIDGHIDQVNRLLERGDRSK 403 (428)
Q Consensus 374 ~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~ 403 (428)
..++.||..|.++|-|-+...+|++...++
T Consensus 377 ciL~tlI~~G~lrgYis~s~~~vV~sk~~p 406 (413)
T COG5600 377 CILVTLIGLGLLRGYISHSRRTVVFSKKDP 406 (413)
T ss_pred HHHHHHHhhhhhhheecccceEEEEecCCC
Confidence 999999999999999999999999987654
No 20
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.8e-06 Score=88.44 Aligned_cols=232 Identities=14% Similarity=0.165 Sum_probs=149.4
Q ss_pred hhcCHHHHHHHHHHHHhhhccCC--ChhhH---HHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh---------------
Q 014255 194 ETKNNKKLKQLYQKALAIKSAIP--HPRIM---GIIRECGGKMHMAERQWADAATDFFEAFKNYD--------------- 253 (428)
Q Consensus 194 ~~~d~~ka~~~l~~a~~~~~~i~--~p~~~---~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~--------------- 253 (428)
-.++|.+|+.++-.+- +...|. +|..| .+....-|+..+..|-.++|..++.+...+=.
T Consensus 498 L~d~f~~ARDlLLMSH-lQdnI~h~D~stQIL~NRtmvQLGLCAFR~Gmi~EaH~~L~dl~st~r~kELLgQgv~~~~~h 576 (843)
T KOG1076|consen 498 LHDNFYTARDLLLMSH-LQDNIQHADISTQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQH 576 (843)
T ss_pred HHHhHHHHHHHHHHHH-HHHHhhccChhHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcchHHHHHhhhhhhhhhh
Confidence 3467888888876662 111222 33333 23335567777788889999998888753311
Q ss_pred h----hcc-hhHH----------HHH-HHHHHHHHhhCCC----------C----CCCCcc----cccccCCCcc-hH-H
Q 014255 254 E----AGN-QRRI----------QCL-KYLVLANMLMESE----------V----NPFDGQ----EAKPYKNDPE-IL-A 297 (428)
Q Consensus 254 ~----~~~-~~~~----------~~l-~y~~L~~lL~~~~----------~----~~~~~~----~~~~~~~~~~-~~-~ 297 (428)
+ .+- ..+. ..+ ...+.|++|..=+ . .+|..+ +-+.+.+-|+ +. -
T Consensus 577 e~t~eQe~~eR~rQlPyHmHINLELlEcVyLtcaMLlEIP~MAA~~~d~Rrr~iSk~frr~Le~serqsf~gPPEn~Reh 656 (843)
T KOG1076|consen 577 EKTAEQEKIERRRQLPYHMHINLELLECVYLTCAMLLEIPYMAAHESDARRRMISKSFRRQLEHSERQSFTGPPENTREH 656 (843)
T ss_pred ccChhhHHHHHhhcCchhhhccHHHHHHHHHHHHHHHhhhHHhhhhhhhhcccccHHHHHHHHHHhhccccCCchhHHHH
Confidence 0 000 0011 111 1334567654210 0 122211 2223443233 11 2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhc----cccccchhhHHhHhCCChHHHH
Q 014255 298 MTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIK----PYTRIRIPFISKELNVPEKDVE 373 (428)
Q Consensus 298 l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~----pYs~I~l~~iA~~l~l~~~~vE 373 (428)
+..-.+|...|+...+.+.+.+..+.|..=|.--.=.+-|.++|.+-.|+-|+- .|.+||++.+|.+|.||+..|-
T Consensus 657 VvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~rIqEEsLRTYLftYss~Y~SvSl~~LA~mFdLp~~~Vh 736 (843)
T KOG1076|consen 657 VVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTERIQEESLRTYLFTYSSVYDSVSLAKLADMFDLPEPKVH 736 (843)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHhCCCchhHH
Confidence 334577889999999999555544444433332233456788888888888864 4789999999999999999999
Q ss_pred HHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHHHHHHHHHHHHHhhhc
Q 014255 374 QLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRKKRRDNQR 427 (428)
Q Consensus 374 ~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~~~~ 427 (428)
..|++||.+.-|.|+.||+.+||+|.+ .+++.+.......+.++..|.+.|.+
T Consensus 737 sIiSkmiineEl~AslDqpt~~iv~hr-vE~srlq~La~qL~eKl~~L~E~NE~ 789 (843)
T KOG1076|consen 737 SIISKMIINEELHASLDQPTQCIVMHR-VEPSRLQSLAVQLSEKLAILAENNEK 789 (843)
T ss_pred HHHHHHHHHHHhhhccCCCcceEEEee-ccchHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999998 45556666777888888888877643
No 21
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.87 E-value=9.8e-07 Score=84.93 Aligned_cols=238 Identities=11% Similarity=0.123 Sum_probs=151.4
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh
Q 014255 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (428)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~ 130 (428)
+.....+.+.+..|...|+|+++.+.|.+.........++...++........+... +.+...+.++.+.+.....+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHhcC
Confidence 335677888888999999999999999988887755556677777777777777653 35566777777777666555
Q ss_pred hhhHHHHHhHHHHHHHHhh-ccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 131 NERLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 131 ~~kl~lr~~~~La~l~~~~-g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
.-....++..++|.+|.+. |++++|.+.+++........+ . .....+++...+.++...|+|.+|...|.+..
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---S---PHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---C---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555668888999999999 999999999999888765431 1 24556777778888889999999988887664
Q ss_pred hhhccCCChhhHH-HHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccc
Q 014255 210 AIKSAIPHPRIMG-IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKP 288 (428)
Q Consensus 210 ~~~~~i~~p~~~~-~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~ 288 (428)
+......-.+... .+....+++++..+|+..|...|-.. .. .+| .
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~------------------------~~---~~~-------~ 228 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY------------------------CS---QDP-------S 228 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH------------------------GT---TST-------T
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------Hh---hCC-------C
Confidence 3210000011111 22233344444444433332221110 00 111 1
Q ss_pred cCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHH
Q 014255 289 YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIR 331 (428)
Q Consensus 289 ~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~ 331 (428)
|...++...+..|++||.++|...|...+..|...-..|++..
T Consensus 229 F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 229 FASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp STTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHH
Confidence 2234567788899999999999999999999988777888743
No 22
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1e-06 Score=86.27 Aligned_cols=243 Identities=18% Similarity=0.212 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHhhccCCCCC-cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhh-HHHHHHhh
Q 014255 152 YGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRI-MGIIRECG 228 (428)
Q Consensus 152 ~~~A~~~l~el~~~~~~~~~~-~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~-p~~-~~~i~~~~ 228 (428)
.+.|.+.+...-..|-..... ...+++-....+--..-++|++++...-++...+......+.+.+ +.- +-.+..+-
T Consensus 132 le~~s~~i~~~f~~cl~d~~~~~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~Yyl 211 (394)
T KOG2688|consen 132 LEAASRTISRLFSSCLSDRRADLEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYL 211 (394)
T ss_pred HHHHHHHHHHHHHHHhCccccccccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeee
Confidence 344555555555554332111 111122333344444557899999888888776655433221211 111 12344566
Q ss_pred hHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCC-CCCCCCcccccccCCCcchHHHHHHHHHHhh
Q 014255 229 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES-EVNPFDGQEAKPYKNDPEILAMTNLIAAYQR 307 (428)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~af~~ 307 (428)
|++++.+.||.+|..++-++|......-..+...++.|++-+.++.+. +..++ ...| ....+..|+++...
T Consensus 212 Gr~a~~~~d~~~A~~~L~~af~~cp~~~~~n~~~iliylip~~~llg~~Pt~~l----L~~~----~~~~~~~lv~aVr~ 283 (394)
T KOG2688|consen 212 GRYAMFESDFLNAFLQLNEAFRLCPDLLLKNKRLILIYLIPTGLLLGRIPTKEL----LDFY----TLDKYSPLVQAVRS 283 (394)
T ss_pred eeehhhhhhHHHHHHHHHHHHHhCcHHHHhhhhhHHHHHhHHHHHhccCcchhh----HhHh----hHHhHHHHHHHHHh
Confidence 899999999999999999999876433333445678999999987654 11111 1112 14567789999999
Q ss_pred CCHHHHHHHHHHhHHhhcCChhHH---HHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCC------ChHHHHHHHHH
Q 014255 308 NEIIEFEKILKSNRKTIMDDPFIR---NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV------PEKDVEQLLVS 378 (428)
Q Consensus 308 ~dl~~f~~~l~~~~~~l~~D~~l~---~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l------~~~~vE~~l~~ 378 (428)
|++..|...++.++..|..-..+- ..--..++++..+.+. +.---++++++.+-..+.. +.+++|-.++.
T Consensus 284 Gnl~~f~~al~~~E~~f~~~gi~l~l~~l~lv~yrnL~kkv~~-~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~ 362 (394)
T KOG2688|consen 284 GNLRLFDLALADNERFFIRSGIYLTLEKLPLVVYRNLFKKVIQ-LWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILAN 362 (394)
T ss_pred ccHHHHHHHHhhhHHHHHHhccHHHhhhhhHHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHh
Confidence 999999999999886554433321 1001112222222211 1112267888888777654 36899999999
Q ss_pred HHHcCceeEEEecCCCEEEEccCCc
Q 014255 379 LILDNRIDGHIDQVNRLLERGDRSK 403 (428)
Q Consensus 379 lI~~g~i~g~IDq~~g~v~~~~~~~ 403 (428)
+|..|+|+|-|++....+++.+.++
T Consensus 363 lI~~G~ikgYish~~~~~V~sK~~p 387 (394)
T KOG2688|consen 363 LIDLGRIKGYISHQLQTLVFSKKDP 387 (394)
T ss_pred hhhhccccchhchhhheEEEecCCC
Confidence 9999999999999999999987653
No 23
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.55 E-value=1.8e-05 Score=76.23 Aligned_cols=176 Identities=14% Similarity=0.200 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 30 TDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
.++++|.+.|.+..+... .+.....+++.+.+.+|.+. ++++++++|++.+..+.........++....+.+.+...
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 357888998888866432 23344688899999998777 999999999999998855556788899999999999874
Q ss_pred -CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHH
Q 014255 108 -ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (428)
Q Consensus 108 -~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (428)
++ .+...+.|+.+.+..+.......-..+..++|.++...|+|++|.++++++-..+...+.. +...-+.++
T Consensus 128 ~~d--~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-----~~~~~~~~l 200 (282)
T PF14938_consen 128 LGD--YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-----KYSAKEYFL 200 (282)
T ss_dssp T----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-----GHHHHHHHH
T ss_pred cCC--HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-----chhHHHHHH
Confidence 34 7889999999999887744334444788899999999999999999999998876432111 112235666
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014255 187 IEIQMYTETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 187 ~e~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (428)
..+-+++..||...|+..++......+
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667788999999999999887754433
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.48 E-value=0.00023 Score=71.24 Aligned_cols=196 Identities=14% Similarity=0.160 Sum_probs=133.2
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|++.|++.++.++++ ..+...++.++...|+++++++.+..++.. +.............+...+...
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred hcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHC
Confidence 4467999999999999987653 467788999999999999999999988764 3222222223444444444432
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (428)
. +.+.....++..++. ..........++.++...|++++|.+.+..+....... . ......++..
T Consensus 121 g--~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~---~~~~~~~~~~ 185 (389)
T PRK11788 121 G--LLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS----L---RVEIAHFYCE 185 (389)
T ss_pred C--CHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc----c---hHHHHHHHHH
Confidence 2 244444444444331 11122345588999999999999999999887653221 1 1223445566
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 188 e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
.+.++...|++.+|..+++++....... ......-|.++...+++.+|...|-++..
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6778889999999999999986542211 12234457888889999999999998864
No 25
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.48 E-value=1.5e-05 Score=81.88 Aligned_cols=213 Identities=16% Similarity=0.206 Sum_probs=149.8
Q ss_pred CCCHHHHHHHHHHhhcCCC----ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMD 102 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~~k~~~~k~v~~il~ 102 (428)
.+++.+|+..|++.+.... .+.+...-.+.+|+.+|.++|+++++.++++.-+.+.+.. .+...++..+..+..
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 4568999999999987543 3445578899999999999999999999999999988431 356667777777766
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHhhhhh--HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhh
Q 014255 103 FVSGSASQNFSLLREFYQTTLKALEEAKNER--LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (428)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k--l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~ 180 (428)
.+.... ..+....++..+++.+..+..+. ...++..+||.+|+..|+|++|.+++.+.........|..+ .
T Consensus 334 ~~~~~~--~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~-----~ 406 (508)
T KOG1840|consen 334 ILQSMN--EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD-----Y 406 (508)
T ss_pred HHHHhc--chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC-----h
Confidence 665422 36678888888888777553222 44478889999999999999999888888776544332111 1
Q ss_pred HHHHHH-HHHHHHHhhcCHHHHHHHHHHHHhhhccC--CChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHH
Q 014255 181 LLEVYA-IEIQMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (428)
Q Consensus 181 ~~e~~l-~e~~l~~~~~d~~ka~~~l~~a~~~~~~i--~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (428)
-+...+ ..+..|...+++..|-..+..+..+.... .+|.+...+.-. |..|-..|+|..|..+--.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL-~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL-AALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH-HHHHHHcccHHHHHHHHHHHH
Confidence 112222 22345688899999999999998887322 235555544433 234557888888876655543
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.40 E-value=7.7e-05 Score=74.71 Aligned_cols=196 Identities=8% Similarity=0.025 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.+..+++............+..++.+|...|+++++.+.+...+... +.. ......+...+....
T Consensus 82 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~-----~~~~~~la~~~~~~g 155 (389)
T PRK11788 82 RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFA-----EGALQQLLEIYQQEK 155 (389)
T ss_pred cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cch-----HHHHHHHHHHHHHhc
Confidence 45677888888777765432223334567777788888888888887777776532 210 111222222222211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+ .+...+.++...+. ...............+|..+...|++++|.+.+.+......+ ..+.+...
T Consensus 156 ~--~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l 220 (389)
T PRK11788 156 D--WQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ------------CVRASILL 220 (389)
T ss_pred h--HHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC------------CHHHHHHH
Confidence 1 22333444443331 100000001112235566666666666666666665544211 12233344
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+.++...|++.+|...+.++... +|..........+.++...+++.+|...|-.+..
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666655432 1111111112223445555666666666555544
No 27
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=0.00057 Score=64.97 Aligned_cols=194 Identities=14% Similarity=0.200 Sum_probs=133.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
-...+++|++.|..++..+++ ++.+=-.++.++.+.|..|.++..=+.+..- |..+-..-.-.+.++...+...
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~----t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE----TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch----hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHh
Confidence 345689999999999887653 4777778999999999999999988888764 4444444444455555444321
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHH-HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~l-r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (428)
+ +++.+-+.+..-.++--+. .-...|..||-...+|.+|.+.-.++.+..... .+-.+..+|.
T Consensus 121 -G--------l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-------~~~eIAqfyC 184 (389)
T COG2956 121 -G--------LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-------YRVEIAQFYC 184 (389)
T ss_pred -h--------hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-------chhHHHHHHH
Confidence 1 2222222111111212222 223478999999999999999999998885432 1356778888
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHH
Q 014255 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (428)
Q Consensus 187 ~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (428)
+.+.-+...+|..+|+..+.+|...... .+.+.| ..|.+++..|+|..|.+.+-.+.
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~----cvRAsi--~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKK----CVRASI--ILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCcc----ceehhh--hhhHHHHhccchHHHHHHHHHHH
Confidence 8888888899999999999998754322 233333 34899999999999988776664
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.17 E-value=0.00044 Score=62.75 Aligned_cols=155 Identities=14% Similarity=0.172 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|++.++.+++. ..+...++.+|...|+++++.+++.+.+... +... .....+...+....
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~~~~~~~~~~~g 113 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDD----YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNG-----DVLNNYGTFLCQQG 113 (234)
T ss_pred CCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH-----HHHHHHHHHHHHcc
Confidence 446777777777776665432 3455667777777777777777777776653 3211 11111122111111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+.....++.+++. ............+|.++...|++++|.+.+.+....... + .+.+...
T Consensus 114 --~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l 175 (234)
T TIGR02521 114 --KYEQAMQQFEQAIED----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-----R-------PESLLEL 175 (234)
T ss_pred --cHHHHHHHHHHHHhc----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----C-------hHHHHHH
Confidence 122333333333221 000111123345666666777777777666666554221 1 1233344
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
+.++...|++.+|..++.++...
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666667777776666666543
No 29
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.14 E-value=0.0013 Score=67.83 Aligned_cols=217 Identities=20% Similarity=0.225 Sum_probs=148.8
Q ss_pred CCCHHHHHHHHHHhhcCCC----ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMD 102 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~--~k~~~~k~v~~il~ 102 (428)
+.+++.|+..++..+..-. -+..-....++.++.+|...++++++..+|+..++..+... .-..++-...++-.
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4578999999998877511 12233456677799999999999999999999999975432 23344445555554
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHh--hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhh
Q 014255 103 FVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (428)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~le~l~~~--~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~ 180 (428)
.+-... ..+.....++.+++..+.. ....-.-.....++.++...+++++|..+++...+...+.+|.++ ..
T Consensus 292 ly~~~G--Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~----~~ 365 (508)
T KOG1840|consen 292 LYYKQG--KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN----VN 365 (508)
T ss_pred HHhccC--ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc----hH
Confidence 444322 2555667777777765541 111122244557888899999999999999988887666555543 35
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 181 ~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~---~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
+..++...+.+|+..|.+.+|..++.+|.+...... ++.+.-.++.. |..+...++|..|...|-++..-.
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l-a~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL-AEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH-HHHHHHhcccchHHHHHHHHHHHH
Confidence 677888889999999999999999999977665432 23333334433 444466778888888888875543
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.11 E-value=0.00031 Score=75.19 Aligned_cols=189 Identities=12% Similarity=0.067 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (428)
+++++|++.|.+.++...... ....++..++.++...|+++++++.|.+.+... +....... .+...+....
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~-~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~-----~la~~~~~~g- 379 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGE-KEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI-----KRASMNLELG- 379 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH-----HHHHHHHHCC-
Confidence 468999999999998653222 235678889999999999999999999998875 54332221 1222222111
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHH
Q 014255 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~ 189 (428)
+.+.....++.+++. ..+. ..+...+|.++...|++++|...+++....-++ ....+...+
T Consensus 380 -~~~eA~~~~~~al~~---~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------------~~~~~~~la 440 (615)
T TIGR00990 380 -DPDKAEEDFDKALKL---NSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------------FIFSHIQLG 440 (615)
T ss_pred -CHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------------CHHHHHHHH
Confidence 244455555555442 1111 234568899999999999999999999877321 134556667
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
.++...|++.+|...++++...... +| ..+..-|.++...|+|.+|...|-.+...
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPE--AP----DVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 8899999999999999998754211 12 23344588888999999999999998764
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.08 E-value=0.00053 Score=73.38 Aligned_cols=191 Identities=10% Similarity=0.144 Sum_probs=128.4
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|+..|+++++.+|.. ..++..++.++...|+++++.+.+...+... +.... +...+...+....
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~-----~~~~lg~~~~~~g 413 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRV----TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPD-----IYYHRAQLHFIKG 413 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHcC
Confidence 568999999999999987753 4567888999999999999999999998864 43221 2222333222212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+.....++.+++. ..+.. .....+|.++...|++++|...+.+.....+. + .+++...
T Consensus 414 --~~~~A~~~~~kal~l----~P~~~--~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-----~-------~~~~~~l 473 (615)
T TIGR00990 414 --EFAQAGKDYQKSIDL----DPDFI--FSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-----A-------PDVYNYY 473 (615)
T ss_pred --CHHHHHHHHHHHHHc----CccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------hHHHHHH
Confidence 254556666665542 11112 23458999999999999999999998876432 1 2345556
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCh--hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHP--RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p--~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+.++...|++.+|...++++..+....... .... +....+.++...++|.+|...|-++..
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 778899999999999999998764432111 1111 111122333346899999988888765
No 32
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.07 E-value=0.00048 Score=64.70 Aligned_cols=179 Identities=9% Similarity=0.101 Sum_probs=115.8
Q ss_pred hHHHHHHhhcccCC-CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHH
Q 014255 16 SRVLCSILEKGLVE-TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (428)
Q Consensus 16 ~~~~~~~~ak~~~~-~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (428)
+....|..|....+ +++++|++.|++++...|. +.+..++.-.++..|++.|++++++..++++++.. |.-++..-+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHH
Confidence 44556777776655 6899999999999998774 36778888999999999999999999999999987 754333322
Q ss_pred HHHHHHH---------HHhcCCC--CCChhHHHHHHHHHHHHHHHh--------hhhhHHH------HHhHHHHHHHHhh
Q 014255 95 KCINNIM---------DFVSGSA--SQNFSLLREFYQTTLKALEEA--------KNERLWF------KTNLKLCKIWFDM 149 (428)
Q Consensus 95 k~v~~il---------~~~~~~~--~~~~~~~~~~~~~~le~l~~~--------~~~kl~l------r~~~~La~l~~~~ 149 (428)
--...+. ..+...+ +.+......-++...+.++.- ...++.. +-.+..|++|+..
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222211 1111111 111111222222222222210 0112111 3456889999999
Q ss_pred ccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHH
Q 014255 150 GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 205 (428)
Q Consensus 150 g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l 205 (428)
|.|..|..-.+.+...-++++ ..-|.+...++.|..+|....|+...
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~---------~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQ---------ATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCc---------hHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 999999988888888766432 23455666678899999999887664
No 33
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.99 E-value=0.001 Score=61.84 Aligned_cols=173 Identities=12% Similarity=0.045 Sum_probs=107.3
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 014255 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (428)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (428)
.|..|... ..+++++|+..|+++++..|++ .|...+...++.++...|+++++++.|..+++.. |.-.... ...-
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~--~a~~ 111 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFS-PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD--YAYY 111 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH--HHHH
Confidence 34444443 3467999999999999887643 4556788999999999999999999999999876 5322110 0000
Q ss_pred HHHHHhcC-CCC-----CChhHHHHHHHHHHHHHHHhhhh----hH----------HHHHhHHHHHHHHhhccHHHHHHH
Q 014255 99 NIMDFVSG-SAS-----QNFSLLREFYQTTLKALEEAKNE----RL----------WFKTNLKLCKIWFDMGEYGRMSKI 158 (428)
Q Consensus 99 ~il~~~~~-~~~-----~~~~~~~~~~~~~le~l~~~~~~----kl----------~lr~~~~La~l~~~~g~~~~A~~~ 158 (428)
.+...+.. ... ...+...+.++.+++ ...+. +. .......+|.+|+..|++.+|...
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 00000000 000 001111122221111 00000 00 002234788999999999999999
Q ss_pred HHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014255 159 LKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (428)
Q Consensus 159 l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a 208 (428)
+.++....++. ....+.+...+..+..+|++.+|..+++..
T Consensus 189 ~~~al~~~p~~---------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 189 FETVVENYPDT---------PATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHCCCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998886532 234567777788999999999999877654
No 34
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.037 Score=58.57 Aligned_cols=220 Identities=15% Similarity=0.157 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHH---HhhhccCCChhhHHHHHHhhhHhHHhhhcHHH---HHHHHHHHHHhhh
Q 014255 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKA---LAIKSAIPHPRIMGIIRECGGKMHMAERQWAD---AATDFFEAFKNYD 253 (428)
Q Consensus 180 ~~~e~~l~e~~l~~~~~d~~ka~~~l~~a---~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~---A~~~f~ea~~~~~ 253 (428)
..++.-+.+..+...++=|.+|-.++... .++....+-|..++.++.--..+++..||+.= |-..||..+.++.
T Consensus 230 l~LDtRf~QLdvAi~lELWQEAyrSiEDIhgLm~lSKrtPkp~~laNYY~KL~~VF~~sgn~LfHAaAw~k~f~l~k~~~ 309 (988)
T KOG2072|consen 230 LYLDTRFQQLDVAIELELWQEAYRSIEDIHGLMKLSKRTPKPSTLANYYEKLAKVFWKSGNPLFHAAAWLKLFKLYKNMN 309 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhc
Confidence 34555566666777777777765555543 34445556688888888777778887777643 3333444333322
Q ss_pred -hhcchhHHHHHHHHHHHHHhhCC-----CCCCCCccccc---------ccCCCcchH----HHHHHHH----HHhhCCH
Q 014255 254 -EAGNQRRIQCLKYLVLANMLMES-----EVNPFDGQEAK---------PYKNDPEIL----AMTNLIA----AYQRNEI 310 (428)
Q Consensus 254 -~~~~~~~~~~l~y~~L~~lL~~~-----~~~~~~~~~~~---------~~~~~~~~~----~l~~L~~----af~~~dl 310 (428)
.....+.......++|++|-..- +..++...+-. ...+.|..| .+++++. .+...++
T Consensus 310 K~~Tqde~q~~as~VlLaaLSIP~~~~~~~~~r~~e~e~~~~ek~~rla~LL~L~~~PTR~~ll~e~v~~gV~~~v~qe~ 389 (988)
T KOG2072|consen 310 KNLTQDELQRMASRVLLAALSIPIPDARSDSARLIEIEDIGKEKNLRLANLLGLPAPPTRKGLLKEAVREGVLSKVDQEV 389 (988)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCCCcccccccccccccchhhHHHHHHHHhCCCCCccHHHHHHHHHHhccHhhhhHHH
Confidence 12223444455567777752210 00111000000 011111111 1222221 1112222
Q ss_pred HHHHHHH-------------HHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhC-CChHHHHHHH
Q 014255 311 IEFEKIL-------------KSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPEKDVEQLL 376 (428)
Q Consensus 311 ~~f~~~l-------------~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~-l~~~~vE~~l 376 (428)
...-++| +..-+.+...|...+++..|.+.+..+.+.+++.-|.+|++++|.+..- ++.-++|+.+
T Consensus 390 kdLY~iLEveF~PL~l~k~lq~ll~~ls~~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~~~~~lEk~~ 469 (988)
T KOG2072|consen 390 KDLYNILEVEFHPLKLCKKLQPLLDKLSESPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFFSAFELEKLL 469 (988)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHH
Confidence 2222222 2222234566777889999999999999999999999999999998866 4888999999
Q ss_pred HHHHHcCceeEEEecCCCEEEEc
Q 014255 377 VSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 377 ~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+++...+-+..+||+..++|.|.
T Consensus 470 v~a~k~~~v~iriDH~~~~v~Fg 492 (988)
T KOG2072|consen 470 VEAAKHNDVSIRIDHESNSVSFG 492 (988)
T ss_pred HHHHhccceeEEeccccceeeec
Confidence 99999999999999999999998
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0012 Score=65.29 Aligned_cols=201 Identities=15% Similarity=0.159 Sum_probs=132.0
Q ss_pred cCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC
Q 014255 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (428)
++.+|+++|.+.|++.++.+ .....++-+++--+-.+|+.+++++++-++-..+ .+.+.+---+.+|.+.+.+
T Consensus 501 f~ngd~dka~~~ykeal~nd----asc~ealfniglt~e~~~~ldeald~f~klh~il---~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNND----ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL---LNNAEVLVQIANIYELLED 573 (840)
T ss_pred eecCcHHHHHHHHHHHHcCc----hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhhC
Confidence 45778999999999998664 3367899999999999999999999987775544 2333333334445555543
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHH
Q 014255 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (428)
Q Consensus 107 ~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (428)
..+.++++-.+-.. ..++- .+..+||.+|-..||-..|..+..+....++- -+|.+-
T Consensus 574 -----~aqaie~~~q~~sl---ip~dp---~ilskl~dlydqegdksqafq~~ydsyryfp~------------nie~ie 630 (840)
T KOG2003|consen 574 -----PAQAIELLMQANSL---IPNDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYFPC------------NIETIE 630 (840)
T ss_pred -----HHHHHHHHHHhccc---CCCCH---HHHHHHHHHhhcccchhhhhhhhhhcccccCc------------chHHHH
Confidence 23444444333221 12222 34569999999999999999988888777642 123332
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 014255 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (428)
Q Consensus 187 ~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y 266 (428)
-..-+|+...-++++..++++|.-+..... .-.++-+..+-..|+|..|+..|.+.-+.| |+-.+||++
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~------kwqlmiasc~rrsgnyqka~d~yk~~hrkf-----pedldclkf 699 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQS------KWQLMIASCFRRSGNYQKAFDLYKDIHRKF-----PEDLDCLKF 699 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHH------HHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----ccchHHHHH
Confidence 334577777778999999998854322111 111122223335789999999988887777 556677877
Q ss_pred HH
Q 014255 267 LV 268 (428)
Q Consensus 267 ~~ 268 (428)
++
T Consensus 700 lv 701 (840)
T KOG2003|consen 700 LV 701 (840)
T ss_pred HH
Confidence 65
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.92 E-value=0.0012 Score=72.63 Aligned_cols=165 Identities=15% Similarity=0.204 Sum_probs=97.9
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh---------
Q 014255 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--------- 89 (428)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--------- 89 (428)
.+..|+.. .++++++|+..|.+.+...|++ ..+...++.+|...|+++++.+.+.+.+..- +.-.
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 99 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPND----AEARFLLGKIYLALGDYAAAEKELRKALSLG-YPKNQVLPLLARA 99 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CChhhhHHHHHHH
Confidence 45555554 4557999999999999887764 4567789999999999999999999987653 2110
Q ss_pred ---hhHHHHHHHHHHHHhcCCC--C------------------CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHH
Q 014255 90 ---RNYSEKCINNIMDFVSGSA--S------------------QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIW 146 (428)
Q Consensus 90 ---k~~~~k~v~~il~~~~~~~--~------------------~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~ 146 (428)
.....+. ++.+...+ + .+.+.....++.+++. .. -.......+|.++
T Consensus 100 ~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~---~~~~~~~~la~~~ 169 (899)
T TIGR02917 100 YLLQGKFQQV----LDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI---DP---RSLYAKLGLAQLA 169 (899)
T ss_pred HHHCCCHHHH----HHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC---CChhhHHHHHHHH
Confidence 0011111 11111111 0 0111122222222110 00 0113345778888
Q ss_pred HhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 147 ~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
...|++++|.+++.++...... ..+.+...+.++...|++.+|...+.++...
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 170 LAENRFDEARALIDEVLTADPG------------NVDALLLKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8888888888888887665321 1234444566777778888887777776543
No 37
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.92 E-value=0.0017 Score=59.18 Aligned_cols=174 Identities=13% Similarity=0.173 Sum_probs=101.9
Q ss_pred HHHHHHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 014255 17 RVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (428)
Q Consensus 17 ~~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k 95 (428)
.-..|..|... .++++++|++.|++++...|. +.+...+.-.++..+++.|+++++...++.++..+ |.-+...-+-
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHH
Confidence 34556666654 455799999999999887764 45678899999999999999999999999999987 7533221111
Q ss_pred HHHHHHHHhcCCC-----CCChhHHHHHHHHHHHHHHHhh--------hhhH------HHHHhHHHHHHHHhhccHHHHH
Q 014255 96 CINNIMDFVSGSA-----SQNFSLLREFYQTTLKALEEAK--------NERL------WFKTNLKLCKIWFDMGEYGRMS 156 (428)
Q Consensus 96 ~v~~il~~~~~~~-----~~~~~~~~~~~~~~le~l~~~~--------~~kl------~lr~~~~La~l~~~~g~~~~A~ 156 (428)
-+..+ ..+...+ +.+.....+-+....+.++.-+ ..++ ..+-.+.+|++|+..|.|..|.
T Consensus 83 Y~~g~-~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 83 YMLGL-SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHH-HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHH-HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 11111 1000000 1011112222222222222100 1111 1134568899999999999999
Q ss_pred HHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHH
Q 014255 157 KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 202 (428)
Q Consensus 157 ~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~ 202 (428)
.-.+.+.+.-+++ ...-+.....++.|.++|....++
T Consensus 162 ~r~~~v~~~yp~t---------~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENYPDT---------PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHSTTS---------HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHCCCC---------chHHHHHHHHHHHHHHhCChHHHH
Confidence 9999998887543 223345555667888888877443
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.00078 Score=64.10 Aligned_cols=168 Identities=14% Similarity=0.238 Sum_probs=98.9
Q ss_pred HHhhcccCCCC-HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 014255 21 SILEKGLVETD-PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (428)
Q Consensus 21 ~~~ak~~~~~~-~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (428)
+.-|++++..+ ++-|.+.|..+++. ++-...++.++..+|-..++|+++++.-..+.+.- +.-.+-.++-....
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de----~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~eIAqfyCE 185 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDE----GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcc----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhHHHHHHHH
Confidence 33444444444 45666666665433 22234566666666666666666666666665543 22222223333333
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhh
Q 014255 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (428)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~ 179 (428)
+-..... +.+.+...+.++.++ ..++.-+|.++.+|+++...|+|+.|.+.++.+... ++ .
T Consensus 186 LAq~~~~--~~~~d~A~~~l~kAl------qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--------n~---~ 246 (389)
T COG2956 186 LAQQALA--SSDVDRARELLKKAL------QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--------NP---E 246 (389)
T ss_pred HHHHHhh--hhhHHHHHHHHHHHH------hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--------Ch---H
Confidence 3322221 111222222222222 233445588899999999999999999999998876 32 4
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 180 ~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
++-++.-.....|..+|+.......++.+....
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 566666666678999999999999988875443
No 39
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.91 E-value=0.012 Score=61.23 Aligned_cols=216 Identities=18% Similarity=0.186 Sum_probs=121.2
Q ss_pred HHHhhcccCC-CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 014255 20 CSILEKGLVE-TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (428)
Q Consensus 20 ~~~~ak~~~~-~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (428)
.+|.+.-+.+ +++++|++.+++..+.-.| ....++.-+.++.+.|+++++...|..|+... |. +..+......
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~D----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pd-n~~Yy~~L~~ 80 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILD----KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PD-NYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-cHHHHHHHHH
Confidence 3444444443 4799999999886443334 36678889999999999999999999999976 53 3333333332
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHh-hhhhH----------------HH---------HHhHHHHHHHHhhccH
Q 014255 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEA-KNERL----------------WF---------KTNLKLCKIWFDMGEY 152 (428)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~le~l~~~-~~~kl----------------~l---------r~~~~La~l~~~~g~~ 152 (428)
.+.-... .++.+.+....+|+...+..-.+ .-.|+ |+ .+-..|-.+|-+..+.
T Consensus 81 ~~g~~~~-~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 81 ALGLQLQ-LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred HHhhhcc-cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHH
Confidence 2211111 01111222333333222211000 00000 00 1112333445544444
Q ss_pred HHHHHHHHHHHhhccCC---CCCc--chhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHh
Q 014255 153 GRMSKILKELHKSCQRE---DGTD--DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (428)
Q Consensus 153 ~~A~~~l~el~~~~~~~---~~~~--d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~ 227 (428)
.-..+++.++....... ++.+ .....+.++=++...++.|...|++.+|-.++++|.... |. ...++..
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-----Pt-~~ely~~ 233 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-----PT-LVELYMT 233 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CC-cHHHHHH
Confidence 44445555554433221 0000 000023334455666789999999999999999886432 22 2346777
Q ss_pred hhHhHHhhhcHHHHHHHHHHH
Q 014255 228 GGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 228 ~g~~~~~~~~y~~A~~~f~ea 248 (428)
-|+++-+.|++.+|+..+-++
T Consensus 234 KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999999887776
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.83 E-value=0.0057 Score=67.19 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.+++++|++.|.+.++.+++. ..++..++.++...|+++++.+.|+.++...
T Consensus 478 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEPDF----FPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456888888888887766543 3456677788888888888888887776643
No 41
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.79 E-value=0.00095 Score=57.37 Aligned_cols=122 Identities=21% Similarity=0.264 Sum_probs=87.9
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++..+.+.+..+++..++ ......+.-.++++++..|+++++.+.|+.++...
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----------------------- 78 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----------------------- 78 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----------------------
Confidence 356778888888888877654 33446666778899999999999998887776532
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (428)
|+.. +.--..++||.+++..|+|++|+..|..+... ...-.+...
T Consensus 79 ~d~~----------------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~-------------~~~~~~~~~ 123 (145)
T PF09976_consen 79 PDPE----------------------LKPLARLRLARILLQQGQYDEALATLQQIPDE-------------AFKALAAEL 123 (145)
T ss_pred CCHH----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc-------------chHHHHHHH
Confidence 2200 00012458999999999999999999663221 223345566
Q ss_pred HHHHHHhhcCHHHHHHHHHHH
Q 014255 188 EIQMYTETKNNKKLKQLYQKA 208 (428)
Q Consensus 188 e~~l~~~~~d~~ka~~~l~~a 208 (428)
...++...|++++|+..|++|
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHh
Confidence 788999999999999999876
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.76 E-value=0.0047 Score=62.43 Aligned_cols=188 Identities=14% Similarity=0.236 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHH----HHHHHHh
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI----NNIMDFV 104 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v----~~il~~~ 104 (428)
.+++++|++.+++..+..|++ ..++..++.+|.+.|+|+++.+++..+.+.. . .++......- ..++...
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~----~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~-~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRH----PEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-V-GDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777666554 3566667777788888888887777777653 2 2333222111 1112222
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHH
Q 014255 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (428)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (428)
...++ .+......+..... .+-.......+|..+...|+.++|.+.+.+..+.-. + ..++.+
T Consensus 240 ~~~~~--~~~l~~~w~~lp~~------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~------~----~~l~~l 301 (398)
T PRK10747 240 MADQG--SEGLKRWWKNQSRK------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY------D----ERLVLL 301 (398)
T ss_pred HHhcC--HHHHHHHHHhCCHH------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------C----HHHHHH
Confidence 11111 11122211111110 011113445788889999999999999988877321 1 111111
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+ .....++..++...+++-.+. -++ ...+..+-|.+++..++|.+|.++|-.+...
T Consensus 302 ~-----~~l~~~~~~~al~~~e~~lk~---~P~---~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 302 I-----PRLKTNNPEQLEKVLRQQIKQ---HGD---TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred H-----hhccCCChHHHHHHHHHHHhh---CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1 122336666665555444322 121 1224455677778888888888888777544
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.0046 Score=61.22 Aligned_cols=258 Identities=14% Similarity=0.172 Sum_probs=150.9
Q ss_pred cCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 014255 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG--KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~--~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (428)
++++|++.|++.++-.-+++. +. ..-+-.+++-+++-+| ++..+.++-..-+..- + -+.++ .+++-=-.+
T Consensus 430 lk~~d~~~aieilkv~~~kdn-k~--~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-r-yn~~a---~~nkgn~~f 501 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDN-KT--ASAAANNLCALRFLQGGKDFADAQQYADIALNID-R-YNAAA---LTNKGNIAF 501 (840)
T ss_pred HhccCHHHHHHHHHHHHhccc-hh--hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-c-cCHHH---hhcCCceee
Confidence 467788899888776643332 11 2445567777777755 5666665555444431 1 11111 000000001
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHH
Q 014255 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (428)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (428)
. +.+.+...++|..++. ++.-......+++-.+...|++++|+++.-+++..+-+ .+++
T Consensus 502 ~---ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n------------n~ev 560 (840)
T KOG2003|consen 502 A---NGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------------NAEV 560 (840)
T ss_pred e---cCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------------hHHH
Confidence 1 1235666677766654 22222233457788899999999999999999988642 3677
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh-hcchhHHH
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE-AGNQRRIQ 262 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~-~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~-~~~~~~~~ 262 (428)
+...+.+|-.+.|..+|.++|-.+..+ ++ +|.+...+ |.+|..+||-..|++++|++|+-|.. .+..+|+.
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl---ip~dp~ilskl----~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL---IPNDPAILSKL----ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc---CCCCHHHHHHH----HHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 778889999999999999998877533 44 57776554 67888899999999999999987742 23234322
Q ss_pred HHHHHHHHHHhhCCCCCCCCcc-cccccCCCcchHHHHHHHHHHh-hCCHHHHHHHHHHhHHhhcCC
Q 014255 263 CLKYLVLANMLMESEVNPFDGQ-EAKPYKNDPEILAMTNLIAAYQ-RNEIIEFEKILKSNRKTIMDD 327 (428)
Q Consensus 263 ~l~y~~L~~lL~~~~~~~~~~~-~~~~~~~~~~~~~l~~L~~af~-~~dl~~f~~~l~~~~~~l~~D 327 (428)
.|.+=... +...++-|... +.+| ....|-.-+..||. ++++.+....-......|..|
T Consensus 634 --ayyidtqf-~ekai~y~ekaaliqp----~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 634 --AYYIDTQF-SEKAINYFEKAALIQP----NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred --HHHHhhHH-HHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 23332221 11112212111 1111 23457666777884 567765544443333334433
No 44
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.002 Score=55.29 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=73.7
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
.+.+|..+.+.|++++|...|+.+.....+ + ...-...+..++++...|++.+|...+.. +.++
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-----~----~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~ 114 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPD-----P----ELKPLARLRLARILLQQGQYDEALATLQQ-------IPDE 114 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----H----HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCc
Confidence 458999999999999999999999887521 1 23333455667899999999999888744 2334
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
...+......|.++...|++.+|...|..+
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 456667788999999999999999998765
No 45
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.72 E-value=0.0051 Score=63.25 Aligned_cols=186 Identities=15% Similarity=0.198 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
++..+-||+.|++.++.+|.- ..++.+++..+.+.|+-+++..+|.+.+.+- +. -+.+++++...+.+ .
T Consensus 299 qG~ldlAI~~Ykral~~~P~F----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~-----hadam~NLgni~~E-~ 367 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPNF----PDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN-----HADAMNNLGNIYRE-Q 367 (966)
T ss_pred cccHHHHHHHHHHHHhcCCCc----hHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc-----cHHHHHHHHHHHHH-h
Confidence 445667777777777666532 3456666666677777777777777766653 32 23344555544443 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+ ..+....+|..+++..-. +..-..+||.+|-++|++++|...+++....-+ .-.+-+...
T Consensus 368 ~-~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P------------~fAda~~Nm 428 (966)
T KOG4626|consen 368 G-KIEEATRLYLKALEVFPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP------------TFADALSNM 428 (966)
T ss_pred c-cchHHHHHHHHHHhhChh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc------------hHHHHHHhc
Confidence 1 133455666666663211 112344788888888888888888888776621 234555666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
...|..+|+.+.|.+-|++|..++.+..+. ..--|.+|-..|+...|...|.++++
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeA------hsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEA------HSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHH------HhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 677778888888888888776554332211 11114455556666666666666643
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.68 E-value=0.004 Score=71.58 Aligned_cols=198 Identities=10% Similarity=-0.003 Sum_probs=125.4
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHH--------HHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI--------NNI 100 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v--------~~i 100 (428)
.+++++|++.|++.++.+|++ ..+...++.+|.+.|+++++...+++++... +.-+.......+ ...
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHH
Confidence 568999999999999998864 3356789999999999999999999998764 432221111100 011
Q ss_pred HHHhcCCCCC----ChhHH------HHH------------HHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHH
Q 014255 101 MDFVSGSASQ----NFSLL------REF------------YQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKI 158 (428)
Q Consensus 101 l~~~~~~~~~----~~~~~------~~~------------~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~ 158 (428)
+..+...|.. +.... ..+ ++.+.+.++...+. ......||.++.+.|++++|.+.
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~---~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS---TRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC---chHHHHHHHHHHHcCCHHHHHHH
Confidence 1111111100 00000 000 11122222211111 13446899999999999999999
Q ss_pred HHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcH
Q 014255 159 LKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQW 238 (428)
Q Consensus 159 l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y 238 (428)
++++...-+. ..+.++..++++...|++.+|...++.+...... ++.. ....|.++...|++
T Consensus 626 y~~al~~~P~------------~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~--~~~~----~~~la~~~~~~g~~ 687 (1157)
T PRK11447 626 YQRVLTREPG------------NADARLGLIEVDIAQGDLAAARAQLAKLPATAND--SLNT----QRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--ChHH----HHHHHHHHHhCCCH
Confidence 9999887321 1355667778899999999999999877543211 2222 22236777789999
Q ss_pred HHHHHHHHHHHHhh
Q 014255 239 ADAATDFFEAFKNY 252 (428)
Q Consensus 239 ~~A~~~f~ea~~~~ 252 (428)
.+|...|-.+....
T Consensus 688 ~eA~~~~~~al~~~ 701 (1157)
T PRK11447 688 AAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHhhhC
Confidence 99999999987643
No 47
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.64 E-value=0.014 Score=60.67 Aligned_cols=213 Identities=13% Similarity=0.207 Sum_probs=127.9
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHhhhh------h-hhHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYY--RLGKYKEMMDAYREMLTYIKSAV------T-RNYSEKCINN 99 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~--~~~~~~~l~e~~~~l~~~~~~~~------~-k~~~~k~v~~ 99 (428)
-++.++|...|..+|+.+|++... .+.+....-+-. ...+.+.+.++|..+...+ |.- + .-......+.
T Consensus 51 Lg~~~eA~~~y~~Li~rNPdn~~Y-y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~ 128 (517)
T PF12569_consen 51 LGRKEEAEKIYRELIDRNPDNYDY-YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKE 128 (517)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHH
Confidence 467899999999999999977543 444444332221 2235678888888887665 420 0 0000111222
Q ss_pred HHHHh-----cC-CCC---------CCh---hHHHHHHHHHHHHHHHhh-----------hhhHHHHHhHHHHHHHHhhc
Q 014255 100 IMDFV-----SG-SAS---------QNF---SLLREFYQTTLKALEEAK-----------NERLWFKTNLKLCKIWFDMG 150 (428)
Q Consensus 100 il~~~-----~~-~~~---------~~~---~~~~~~~~~~le~l~~~~-----------~~kl~lr~~~~La~l~~~~g 150 (428)
.++.+ .+ +|. .+. .......+.....++..+ .....+-+.+-||++|-..|
T Consensus 129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 22211 11 232 011 112222222222221110 01122235568999999999
Q ss_pred cHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc----------------
Q 014255 151 EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA---------------- 214 (428)
Q Consensus 151 ~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~---------------- 214 (428)
++++|++++.+.-..+++ .+|+|...++++-+.||+.+|-..++.|+.....
T Consensus 209 ~~~~Al~~Id~aI~htPt------------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPT------------LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred CHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 999999999998888532 5799999999999999999999999988643100
Q ss_pred -----------C--------CChhhHHHHH--HhhhHhHHhhhcHHHHHHHHHHHHHhhhhh
Q 014255 215 -----------I--------PHPRIMGIIR--ECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (428)
Q Consensus 215 -----------i--------~~p~~~~~i~--~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~ 255 (428)
. .+..-+.++| .-.|..|...|+|-.|.+.|..+...|.+.
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 0 0112233444 346788888999999999999887766543
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.58 E-value=0.012 Score=53.25 Aligned_cols=172 Identities=10% Similarity=0.013 Sum_probs=114.0
Q ss_pred chhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh
Q 014255 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (428)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~ 129 (428)
......++.+++..|...|+++++.+.+.+.+... +... .....+...+.... +.+...+.++.+++.-.
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~-----~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~-- 96 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDY-----LAYLALALYYQQLG--ELEKAEDSFRRALTLNP-- 96 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH-----HHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCC--
Confidence 34467889999999999999999999999988764 3321 12122222222211 24445566666554211
Q ss_pred hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 130 ~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
.+. .....++.++...|++++|.+.+.+....... ......+...+.++...|++.+|...+.++.
T Consensus 97 ~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 97 NNG----DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY----------PQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred CCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhcccc----------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 23457899999999999999999988764211 1112344445678899999999999999887
Q ss_pred hhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 210 ~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
...+. ++ ......|.++...++|.+|...|-++...
T Consensus 163 ~~~~~--~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 163 QIDPQ--RP----ESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HhCcC--Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54321 11 23334578888899999999988887654
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.58 E-value=0.0078 Score=61.07 Aligned_cols=194 Identities=17% Similarity=0.205 Sum_probs=115.1
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHH----HHHHHHh
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI----NNIMDFV 104 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v----~~il~~~ 104 (428)
.+++++|++.++..++..|++ ..++..++.+|.+.|+|+++.+.+..+.+.- ..+........ ...++.-
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~----~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRH----KEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 467888999999988887755 3567888899999999999999988888752 12222221111 1112111
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHH
Q 014255 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (428)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (428)
...++ .+.+....+... ...+--.++...+|..+...|++++|.+.+.+..+...+. . .....
T Consensus 240 ~~~~~--~~~L~~~~~~~p------~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~----~----~~~~~- 302 (409)
T TIGR00540 240 MADEG--IDGLLNWWKNQP------RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD----R----AISLP- 302 (409)
T ss_pred HHhcC--HHHHHHHHHHCC------HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc----c----cchhH-
Confidence 11011 111111111110 0111112345578999999999999999999999986531 1 11111
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHH--HHHH
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFF--EAFK 250 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~--ea~~ 250 (428)
+...-..+..+|..++...++++.+..+. +|. +.+....|.++...++|.+|.++|- .++.
T Consensus 303 -~l~~~~~l~~~~~~~~~~~~e~~lk~~p~--~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 303 -LCLPIPRLKPEDNEKLEKLIEKQAKNVDD--KPK--CCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred -HHHHhhhcCCCChHHHHHHHHHHHHhCCC--Chh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 11112233457777877777776543211 232 3455566888999999999999888 3544
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.55 E-value=0.0088 Score=65.73 Aligned_cols=199 Identities=9% Similarity=0.093 Sum_probs=128.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|++.|+++++..+..... +...++.+|...|+++++.++|..++..- +....... .....+.-.+.+
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~---a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~-~~~~~L~~a~~~- 322 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW---AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSD-EELADLFYSLLE- 322 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCCh-HHHHHHHHHHHh-
Confidence 3456899999999998765322222 22335889999999999999999987642 22100001 111121111111
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhh------------hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcch
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKN------------ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~------------~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~ 175 (428)
. ...+.....++.+.+. .+. +--+......+|.++...|++++|.+.++++....+. +
T Consensus 323 ~-g~~~eA~~~l~~~~~~---~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n- 392 (765)
T PRK10049 323 S-ENYPGALTVTAHTINN---SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----N- 392 (765)
T ss_pred c-ccHHHHHHHHHHHhhc---CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-
Confidence 1 1233334444433321 110 1123445568999999999999999999999877431 1
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 176 ~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
.+++...+.++...|++.+|...++++.... |.-. .+....|..++..++|.+|...+-+....+++
T Consensus 393 ------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-----Pd~~-~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 393 ------QGLRIDYASVLQARGWPRAAENELKKAEVLE-----PRNI-NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 3577778889999999999999999987653 2211 14455577888899999999999988775543
No 51
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.55 E-value=0.0063 Score=69.95 Aligned_cols=189 Identities=8% Similarity=0.011 Sum_probs=123.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|++.|+++++.++++ ..++..++.++...|+++++.+.|++.+... +.... ....+...+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~-----a~~~L~~l~~~- 431 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTD----SYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN-----AVRGLANLYRQ- 431 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHh-
Confidence 5678999999999999988754 4577889999999999999999999999875 54221 22233333321
Q ss_pred CCCChhHHHHHHHHHHHHHHHh---hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEA---KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~---~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (428)
.+ .+....+++.....-... ....+.......+|..+...|++++|.+.+++....-++ + ..+
T Consensus 432 ~~--~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-----~-------~~~ 497 (1157)
T PRK11447 432 QS--PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-----S-------VWL 497 (1157)
T ss_pred cC--HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------HHH
Confidence 11 222333333221110000 011122234457899999999999999999999887431 2 235
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHH
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~e 247 (428)
+...+.+|...|++.+|...++++...... +|. .....|.++...+++.+|...+-.
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~P~--~~~----~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQKPN--DPE----QVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHH----HHHHHHHHHHhCCCHHHHHHHHHh
Confidence 566778999999999999999988653221 222 122335666677888888776644
No 52
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=97.53 E-value=0.00021 Score=61.45 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=66.1
Q ss_pred CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHH
Q 014255 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKD 371 (428)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~ 371 (428)
+|++..+..|.+++.++++.+|-..++.+. -.+.+...+..|.+.+|...+.-+...|++|+++.+|+.+|++.++
T Consensus 38 ~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~~~e 113 (143)
T PF10075_consen 38 DPEIKAIWSLGQALWEGDYSKFWQALRSNP----WSPDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLSEEE 113 (143)
T ss_dssp -TTHHHHHHHHHHHHTT-HHHHHHHS-TT--------HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS-HHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCCHHH
Confidence 588999999999999999999988665531 1245677788899999999999999999999999999999999888
Q ss_pred HHHHHHHH
Q 014255 372 VEQLLVSL 379 (428)
Q Consensus 372 vE~~l~~l 379 (428)
++..+.+-
T Consensus 114 l~~~~~~~ 121 (143)
T PF10075_consen 114 LEKFIKSR 121 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88888774
No 53
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.014 Score=62.80 Aligned_cols=198 Identities=14% Similarity=0.150 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-----------
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI----------- 100 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i----------- 100 (428)
.+.|.+.|..+++..|++ .=++--=+.+.+..|+|-.++.+|+.++... |. .++-.--.+-.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~N----il~LlGkA~i~ynkkdY~~al~yyk~al~in-p~-~~aD~rIgig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDN----ILALLGKARIAYNKKDYRGALKYYKKALRIN-PA-CKADVRIGIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhCCcc----hHHHHHHHHHHhccccHHHHHHHHHHHHhcC-cc-cCCCccchhhhHHHhccchhhHH
Confidence 678999999998887754 2233333456778889999999999877654 32 111110000001
Q ss_pred --HHH-hcCCCCCChhHHHHHHHHHHHHHHH--h-hhhhHH--H-----------HHhHHHHHHHHhhccHHHHHHHHHH
Q 014255 101 --MDF-VSGSASQNFSLLREFYQTTLKALEE--A-KNERLW--F-----------KTNLKLCKIWFDMGEYGRMSKILKE 161 (428)
Q Consensus 101 --l~~-~~~~~~~~~~~~~~~~~~~le~l~~--~-~~~kl~--l-----------r~~~~La~l~~~~g~~~~A~~~l~e 161 (428)
... +.-.|. .+...+.+..-.+.. + +.++.. + -+...||..++..|+|..+..+...
T Consensus 220 ~a~~ralqLdp~----~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 220 LAFERALQLDPT----CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHhcChh----hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 000 100111 111111111111110 0 011100 0 2345899999999999999999888
Q ss_pred HHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHH
Q 014255 162 LHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADA 241 (428)
Q Consensus 162 l~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A 241 (428)
.-..+.. +..+.+-+...++.|+++||+.+|..+|-.|.+..+.-+- .+.+. -|-++++++++..|
T Consensus 296 ai~~t~~---------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~---l~~~G--lgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 296 AIKNTEN---------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV---LPLVG--LGQMYIKRGDLEES 361 (1018)
T ss_pred HHHhhhh---------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc---ccccc--hhHHHHHhchHHHH
Confidence 8777532 2566788888899999999999999999999877655321 11111 26788899999999
Q ss_pred HHHHHHHHHhhh
Q 014255 242 ATDFFEAFKNYD 253 (428)
Q Consensus 242 ~~~f~ea~~~~~ 253 (428)
..+|...++.+.
T Consensus 362 ~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 362 KFCFEKVLKQLP 373 (1018)
T ss_pred HHHHHHHHHhCc
Confidence 999998876653
No 54
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=97.45 E-value=0.0028 Score=63.30 Aligned_cols=180 Identities=17% Similarity=0.216 Sum_probs=105.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCC--hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh------hcchh
Q 014255 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPH--PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE------AGNQR 259 (428)
Q Consensus 188 e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~--p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~------~~~~~ 259 (428)
..|++.-+|||..|-..++...-...+++. |--+-.+..+-|-.|+.-|+|.+|.+.|-.+...... ..++.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q 207 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQ 207 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch
Confidence 358899999999887666543111111221 2222234567799999999999999999998532211 11111
Q ss_pred -------HHHHHHHHHHHHHhhCCCCC-CCCcccccccCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcC-----
Q 014255 260 -------RIQCLKYLVLANMLMESEVN-PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMD----- 326 (428)
Q Consensus 260 -------~~~~l~y~~L~~lL~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~----- 326 (428)
.-++...+++|..|++..++ +..+..--+| .+=......||+..|.+.....++.|..
T Consensus 208 ~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky---------~ek~~kmq~gd~~~f~elF~~acPKFIsp~~pp 278 (404)
T PF10255_consen 208 YDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKY---------GEKMEKMQRGDEEAFEELFSFACPKFISPVSPP 278 (404)
T ss_pred hhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---------HHHHHHHHccCHHHHHHHHHhhCCCccCCCCCC
Confidence 12333344555555543322 1111100011 1222234567999999888776553321
Q ss_pred -----------ChhHHHHHHHHHHHHHH----HHHHHhhccccccchhhHHhHhCCChHHHHHHHH
Q 014255 327 -----------DPFIRNYIEDLLKNVRT----QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLV 377 (428)
Q Consensus 327 -----------D~~l~~~~~~l~~~i~~----~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~ 377 (428)
||. ..+++.+.+.|.. ..|+.+++-|++|+++.+|..++++++++...|+
T Consensus 279 ~~~~~~~~~~~e~~-~~Ql~~Fl~eV~~q~~l~~lRSyLKLYtti~l~KLA~fl~vd~~~lr~~Ll 343 (404)
T PF10255_consen 279 DYDGPSQNKNKEPY-RRQLKLFLDEVKQQQKLPTLRSYLKLYTTIPLEKLASFLDVDEEELRSQLL 343 (404)
T ss_pred CcccccchhhhhHH-HHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCHHHHHHHcCCCHHHHHHHHH
Confidence 333 3345555555544 4788888999999999999999999987655544
No 55
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.41 E-value=0.0039 Score=64.07 Aligned_cols=186 Identities=15% Similarity=0.171 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
+++...||..|++.++.+|.- ..++.+++.+|...+.+|.++..|.+-+... +.- +..--++.-.+-+ .
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f----~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~-----A~a~gNla~iYye-q 299 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNF----LDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH-----AVAHGNLACIYYE-Q 299 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcc----hHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc-----hhhccceEEEEec-c
Confidence 567889999999999998753 5688999999999999999999998877654 321 1111111111111 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+ ..+..+.-|+.+++. + -.|.....+||.-+-+.|+..+|...+......|.+- .+..-..
T Consensus 300 G-~ldlAI~~Ykral~~-~-----P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------------adam~NL 360 (966)
T KOG4626|consen 300 G-LLDLAIDTYKRALEL-Q-----PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH------------ADAMNNL 360 (966)
T ss_pred c-cHHHHHHHHHHHHhc-C-----CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------------HHHHHHH
Confidence 1 255566666666652 1 1233445588888888899999999888888887642 2223344
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
..+|.+.|.+..|..+|.+|..+......+. . --|.++-.+|++.+|..+|-++.+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~-----n-NLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAAAH-----N-NLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhhhh-----h-hHHHHHHhcccHHHHHHHHHHHHh
Confidence 5678888888888888888876543322111 0 114566677788888888888853
No 56
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.23 E-value=0.14 Score=55.62 Aligned_cols=181 Identities=14% Similarity=0.129 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (428)
+++++|.+.|.+.... ...++..++..|.+.|++++++++|..+... + +.... .....++..+.....
T Consensus 273 g~~~~A~~vf~~m~~~-------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g-~~pd~--~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 273 GDIEDARCVFDGMPEK-------TTVAWNSMLAGYALHGYSEEALCLYYEMRDS--G-VSIDQ--FTFSIMIRIFSRLAL 340 (697)
T ss_pred CCHHHHHHHHHhCCCC-------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--C-CCCCH--HHHHHHHHHHHhccc
Confidence 4567777777765322 1345566777777778888777777776542 1 22211 245555665554222
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHH
Q 014255 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~ 189 (428)
.+...+.++...+. + -..-..+..-|...|...|++++|.+++.++... | +..+-..+
T Consensus 341 --~~~a~~i~~~m~~~----g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d-------~~t~n~lI 398 (697)
T PLN03081 341 --LEHAKQAHAGLIRT----G-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--------N-------LISWNALI 398 (697)
T ss_pred --hHHHHHHHHHHHHh----C-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--------C-------eeeHHHHH
Confidence 33333333332221 0 0011123346777777788888887777765421 1 11233344
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChh-hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPR-IMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~-~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
..|...|+..+|..++++.... .-.++.. ..+.+ ..+.+.|++.+|.+.|.+.-+
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll-----~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVL-----SACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHH
Confidence 5677777778777777765421 1111211 11111 123456777777777666544
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.23 E-value=0.081 Score=48.92 Aligned_cols=190 Identities=11% Similarity=0.013 Sum_probs=112.3
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh
Q 014255 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (428)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~ 130 (428)
++....+.+.+..+...|+++++.+.+..+++.. +. +. ......-.+...+.... +.+.....++..++. .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~-~~-~~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~---~p 101 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PF-SP-YAEQAQLDLAYAYYKSG--DYAEAIAAADRFIRL---HP 101 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-ch-hHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH---Cc
Confidence 4567888999999999999999999999998876 42 11 11222222233332212 254555666655442 22
Q ss_pred hhhHHHHHhHHHHHHHHhh--------ccHHHHHHHHHHHHhhccCCCCCcchhh-----hhhHHHHHHHHHHHHHhhcC
Q 014255 131 NERLWFKTNLKLCKIWFDM--------GEYGRMSKILKELHKSCQREDGTDDQKK-----GSQLLEVYAIEIQMYTETKN 197 (428)
Q Consensus 131 ~~kl~lr~~~~La~l~~~~--------g~~~~A~~~l~el~~~~~~~~~~~d~~~-----~~~~~e~~l~e~~l~~~~~d 197 (428)
+....-.....+|..+... |++++|.+.++++...-++......... ...........+.+|...|+
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~ 181 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA 181 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2222112334566666654 8999999999999877543211100000 00000112345677889999
Q ss_pred HHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 198 NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 198 ~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+.+|...+..+....+. +|. ....+...|.++...|+|.+|..+|-..-..
T Consensus 182 ~~~A~~~~~~al~~~p~--~~~-~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 182 YVAAINRFETVVENYPD--TPA-TEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred hHHHHHHHHHHHHHCCC--Ccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998887643221 121 1233445588888999999999876554333
No 58
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.23 E-value=0.057 Score=58.31 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=44.9
Q ss_pred HHHHHHHHhhccHHH----HHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 014255 140 LKLCKIWFDMGEYGR----MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (428)
Q Consensus 140 ~~La~l~~~~g~~~~----A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i 215 (428)
..||..+...|++++ |...+++.....++ ....+...+.++...|++.+|...++++......
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~- 316 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD- 316 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 345666666666654 45555555544211 1234444455666666777766666666543211
Q ss_pred CChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 216 ~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
++. .....|.++...|+|.+|...|..+
T Consensus 317 -~~~----a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 317 -LPY----VRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred -CHH----HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111 1122244444555555555555444
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.026 Score=57.66 Aligned_cols=175 Identities=17% Similarity=0.239 Sum_probs=127.2
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhhcCCCc-cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh-h------
Q 014255 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-V------ 88 (428)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-~------ 88 (428)
+|-|||-.= +++++|-+.|.+....++. ...| -..|..+.-.|.-|+++..|..-.+++.+. .
T Consensus 317 aVg~YYl~i----~k~seARry~SKat~lD~~fgpaW-----l~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 317 AVGCYYLMI----GKYSEARRYFSKATTLDPTFGPAW-----LAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred hHHHHHHHh----cCcHHHHHHHHHHhhcCccccHHH-----HHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 577888763 6789999999999888764 3456 456677777888888888887777665221 1
Q ss_pred -------hhhHHHHHHHHHHHHhcCCCC------------CChhHHHHHHHHHHHHHHHhhhhhH-HHHHhHHHHHHHHh
Q 014255 89 -------TRNYSEKCINNIMDFVSGSAS------------QNFSLLREFYQTTLKALEEAKNERL-WFKTNLKLCKIWFD 148 (428)
Q Consensus 89 -------~k~~~~k~v~~il~~~~~~~~------------~~~~~~~~~~~~~le~l~~~~~~kl-~lr~~~~La~l~~~ 148 (428)
+-.-+.+-..+.+.....-|- ........++..+++.++.+.+++. |-.+..+||+++..
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 222333444444443322110 1234466777788877777767775 88999999999999
Q ss_pred hccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 149 ~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.+.|.+|...++.....+++ -+++|...+-+|..+||+.+|...+.+|..+.
T Consensus 468 l~~~~eAI~~~q~aL~l~~k------------~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK------------DASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC------------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999999999999888653 25788888899999999999999999997553
No 60
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.21 E-value=0.067 Score=57.74 Aligned_cols=98 Identities=7% Similarity=-0.012 Sum_probs=71.8
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
.....+|.++...|++++|...+++....-.. + ...+...+.++...|++.+|...+.++....
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-----~-------~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---- 348 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPD-----L-------PYVRAMYARALRQVGQYTAASDEFVQLAREK---- 348 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 45668999999999999999999998876321 1 2334445678889999999999998775432
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
|... ......|..+...|++.+|...|-.+....
T Consensus 349 -P~~~-~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 -GVTS-KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred -ccch-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2211 122333667788999999999999987654
No 61
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.17 E-value=0.18 Score=57.05 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT 82 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (428)
.++.++|.+.|.+..+..... ....+..++..|++.|+++++.++|..+..
T Consensus 485 ~G~vd~A~~vf~eM~~~Gv~P---dvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 485 SGKVDAMFEVFHEMVNAGVEA---NVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456788888888776543211 134556677777778888887777777654
No 62
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.15 E-value=0.094 Score=48.88 Aligned_cols=179 Identities=11% Similarity=0.098 Sum_probs=119.6
Q ss_pred hhhHHHHHHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhH
Q 014255 14 TVSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY 92 (428)
Q Consensus 14 ~~~~~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~ 92 (428)
..+....|-++... ..+|+++|++.|+.+....| .++|..+++-.++..+++.+++++++-.+..++..+ |.-+...
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~d 108 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNAD 108 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChh
Confidence 44677788887654 55689999999999975554 467889999999999999999999999999999998 7543333
Q ss_pred HHHHHHHHHHHhcCCCC--CChhHHHHHHHHHHHHHHHhh--------hhhHHH------HHhHHHHHHHHhhccHHHHH
Q 014255 93 SEKCINNIMDFVSGSAS--QNFSLLREFYQTTLKALEEAK--------NERLWF------KTNLKLCKIWFDMGEYGRMS 156 (428)
Q Consensus 93 ~~k~v~~il~~~~~~~~--~~~~~~~~~~~~~le~l~~~~--------~~kl~l------r~~~~La~l~~~~g~~~~A~ 156 (428)
-+-=++.+.. +..+++ .+.....+-+....+.|+.-+ ..++.. .-++..|++|++.|.|-.|.
T Consensus 109 Y~~YlkgLs~-~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 109 YAYYLKGLSY-FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred HHHHHHHHHH-hccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 3333333332 222222 223333444444444444311 122211 44668999999999999999
Q ss_pred HHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHH
Q 014255 157 KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204 (428)
Q Consensus 157 ~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~ 204 (428)
.-.+++...-+++ ...-+-+......|..+|-...|+..
T Consensus 188 nR~~~v~e~y~~t---------~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 188 NRFEEVLENYPDT---------SAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHhccccc---------cchHHHHHHHHHHHHHhCChHHHHHH
Confidence 8888888775433 23345555556778888887776644
No 63
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.08 E-value=0.12 Score=46.95 Aligned_cols=168 Identities=13% Similarity=0.138 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh
Q 014255 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (428)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~ 130 (428)
+|..+.+-+.+.-+.+.|+|+++++.++.+...+ | +... ..
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P----------------------~s~~--a~-------------- 42 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-P----------------------NSPY--AP-------------- 42 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--T----------------------TSTT--HH--------------
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C----------------------CChH--HH--------------
Confidence 4567888999999999999999999999998876 3 2111 00
Q ss_pred hhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHH---h---hcCHHHHHHH
Q 014255 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT---E---TKNNKKLKQL 204 (428)
Q Consensus 131 ~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~---~---~~d~~ka~~~ 204 (428)
...+.+|..++..|+|.+|...++++...-++.+..++ +.+....+.+.. . ..|...++.+
T Consensus 43 ------~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~-------A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 43 ------QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY-------ALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp ------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH-------HHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh-------HHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 12358889999999999999999999888765432211 122222221111 1 3445555555
Q ss_pred HHHHHhhhccCCC----hhh----------HHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 014255 205 YQKALAIKSAIPH----PRI----------MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLA 270 (428)
Q Consensus 205 l~~a~~~~~~i~~----p~~----------~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~ 270 (428)
+..-..+....|+ +.. .+.--..-|..+...+.|..|...|-.+.+.|.... ....++.+++-+
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~--~~~~al~~l~~~ 187 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP--AAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc--hHHHHHHHHHHH
Confidence 5555555555443 111 112224568899999999999999999999885443 333455555554
Q ss_pred HH
Q 014255 271 NM 272 (428)
Q Consensus 271 ~l 272 (428)
-.
T Consensus 188 y~ 189 (203)
T PF13525_consen 188 YY 189 (203)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.07 E-value=0.073 Score=59.81 Aligned_cols=96 Identities=6% Similarity=-0.068 Sum_probs=71.7
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
....+|.++...|++++|...+.+.....++ + .+.+...+.++...|++.+|...+.++....+. +
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-----~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~--~ 676 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPN-----N-------SNYQAALGYALWDSGDIAQSREMLERAHKGLPD--D 676 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C
Confidence 4468889999999999999999998887431 1 245556666778889999999999988765321 1
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
| .+....|.++...|++.+|..+|-.++..
T Consensus 677 ~----~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 677 P----ALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred H----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2 23444578888899999999999998754
No 65
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.098 Score=48.32 Aligned_cols=180 Identities=14% Similarity=0.163 Sum_probs=116.8
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHHhhcCCCcc-chh-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 014255 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPEK-AEW-GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (428)
Q Consensus 18 ~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~-~~~-~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k 95 (428)
.++|=+|| +|++|-..+.+.++-.+.+ .-| ..|++++++-+..+...|.++.++|++-+...-..-+....+-
T Consensus 38 AvafRnAk-----~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 38 AVAFRNAK-----KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHhhc-----cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 34454444 3566666666665433222 222 5899999999999999999999999988876533334555555
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcch
Q 014255 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (428)
Q Consensus 96 ~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~ 175 (428)
.+....+.+.+ .+.+....+|..+++.++.....+.-+...-+.++++.....|.+|...+.+...........
T Consensus 113 aleKAak~len---v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y--- 186 (308)
T KOG1585|consen 113 ALEKAAKALEN---VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY--- 186 (308)
T ss_pred HHHHHHHHhhc---CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc---
Confidence 56666666654 235578899999999888643333444555688888888899998876665544432111000
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 176 ~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
..-...++..+-+|+...||..|+..++.+-.+
T Consensus 187 ---~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 187 ---NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred ---ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 112334555667788888999988887766443
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=96.98 E-value=0.033 Score=58.86 Aligned_cols=151 Identities=8% Similarity=-0.092 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.+++.++.+|++ ..++..++.++...|+++++.+.|++.+... |
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----------------------P 369 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNN----PQALGLLGLINTIHSEYIVGSLLFKQANLLS-----------------------P 369 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------C
Confidence 345789999999999998865 4566778899999999999999998887764 3
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+. . .....+|.++...|++++|...+.+....-+. +. ..+...
T Consensus 370 ~~-~------------------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-----~~-------~~~~~~ 412 (553)
T PRK12370 370 IS-A------------------------DIKYYYGWNLFMAGQLEEALQTINECLKLDPT-----RA-------AAGITK 412 (553)
T ss_pred CC-H------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----Ch-------hhHHHH
Confidence 20 0 01235677777778888888777777666332 10 011111
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
..+++..|++.+|...+.++...... .+|. .....|.++...|++.+|...|...
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p-~~~~----~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQ-DNPI----LLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccc-cCHH----HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 22344567777777776665432110 0121 2233456666777888877776554
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.95 E-value=0.022 Score=46.13 Aligned_cols=104 Identities=8% Similarity=0.008 Sum_probs=77.3
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
+.+.+|..+...|++++|.+.+..+.....+ + ....+.+...+.++...|++..|...+..+....+ +
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~ 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK-----S----TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---K 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----c----cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---C
Confidence 3568899999999999999999999876432 1 22345566678899999999999999998865422 1
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
...........|.++...+++..|...|-++...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 111223345557778889999999999999987763
No 68
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.94 E-value=0.02 Score=54.77 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhcCC--CccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAME--PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~--~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
.+++++|++.+.+.+... +++ ......++.++...|+++.+.+.|.+++..
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~----~~~~~~~a~La~~~~~~~~A~~ay~~l~~~ 73 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDD----PEYWRLLADLAWSLGDYDEAIEAYEKLLAS 73 (280)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccccccccccccccccccccc----cccccccccccccccccccccccccccccc
Confidence 457889999886655543 222 234456788888888888888888888765
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.89 E-value=0.35 Score=46.75 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014255 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (428)
..+.+|..+.+++...+-+.+.....+.+.+.+|...|+++++...|++.+... +.... ....+...+....
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~-----a~~~lg~~~~~~g-- 112 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMAD-----AYNYLGIYLTQAG-- 112 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHH-----HHHHHHHHHHHCC--
Confidence 368899999999976543333356788899999999999999999999998875 54332 2233333333212
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
+.+.....++.+++. .. .+ ......+|.++...|++++|.+.+.......+
T Consensus 113 ~~~~A~~~~~~Al~l-~P-~~----~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 113 NFDAAYEAFDSVLEL-DP-TY----NYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred CHHHHHHHHHHHHHh-CC-CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 244555556665542 11 11 12345788999999999999999988887643
No 70
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.80 E-value=0.027 Score=53.79 Aligned_cols=188 Identities=10% Similarity=0.129 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
..++++|++.|.+++..++. ....+..++.+ ...++++++.++........ + .. ..+...+..+....
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~----~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-~--~~----~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA----NPQDYERLIQL-LQDGDPEEALKLAEKAYERD-G--DP----RYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccc----ccccccccccc-cccccccccccccccccccc-c--cc----chhhHHHHHHHHHh
Confidence 45789999999999877543 24456777777 68899999998887665433 2 11 22233333333222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+ .+.....++...+.. ..... ......+|.++...|++++|.+.+++..+.-++ + .++....
T Consensus 125 ~--~~~~~~~l~~~~~~~-~~~~~---~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-----~-------~~~~~~l 186 (280)
T PF13429_consen 125 D--YDEAEELLEKLEELP-AAPDS---ARFWLALAEIYEQLGDPDKALRDYRKALELDPD-----D-------PDARNAL 186 (280)
T ss_dssp ---HHHHHHHHHHHHH-T----T----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------------HHHHHHH
T ss_pred H--HHHHHHHHHHHHhcc-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C-------HHHHHHH
Confidence 2 444555555543211 11111 123457889999999999999999999888542 2 1233334
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
+.++...|+..+++.++....+... .+|.+. ..-|..+...|++.+|...|-++....
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~--~~~~~~----~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAP--DDPDLW----DALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-H--TSCCHC----HHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCc--CHHHHH----HHHHHHhcccccccccccccccccccc
Confidence 4567788999998888887755431 133332 333777778889999999999997743
No 71
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.70 E-value=0.24 Score=56.22 Aligned_cols=96 Identities=8% Similarity=0.023 Sum_probs=49.1
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
..-|...|...|++++|.+++.++...-..+ + +..+-..+..|.+.|++.+|..+++..... .-.++.
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P----d-------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~ 754 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRP----T-------VSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNT 754 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----C-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCH
Confidence 3456666667777777777776665431111 1 123444455666777777777776654321 111121
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
.....+ ...+...+++..|...|-+..+
T Consensus 755 ~Ty~sL----L~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 755 ITYSIL----LVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHH----HHHHHHCCCHHHHHHHHHHHHH
Confidence 111111 1234456677777777766643
No 72
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.69 E-value=0.066 Score=47.25 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=74.6
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
....+|..+...|++++|...+++......++ ......+...+.++...|++.+|..++.++.........
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDP---------NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 34689999999999999999999988764321 112456677788999999999999999998765332211
Q ss_pred h-hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 218 P-RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 218 p-~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
+ ...+.+....|......+++..|...|.++...+..
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence 1 122344444455555567777777777777665544
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.69 E-value=0.22 Score=49.03 Aligned_cols=194 Identities=10% Similarity=-0.038 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (428)
++++.|.+.+..+....+.+... .......+.++...|+++++.+.+.+.+... |.-. ..-.+ ...-.......
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~---~a~~~-~~~~~~~~~~~ 93 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATE-RERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDL---LALKL-HLGAFGLGDFS 93 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcH---HHHHH-hHHHHHhcccc
Confidence 35677788888877665533221 1222334678899999999999999998876 5322 11110 00111110011
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHH
Q 014255 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~ 189 (428)
.......+ +++. .........-....+|.++...|++++|.+.+++....-++ + ...+...+
T Consensus 94 ~~~~~~~~----~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-----~-------~~~~~~la 155 (355)
T cd05804 94 GMRDHVAR----VLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-----D-------AWAVHAVA 155 (355)
T ss_pred cCchhHHH----HHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-------cHHHHHHH
Confidence 01111111 1111 11111112223347888999999999999999999887431 1 23445557
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHH
Q 014255 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (428)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (428)
.++...|++.+|..++.++...... +|......+...|.++...|++.+|...|-++.
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 8889999999999999888654322 233333445566888999999999999988874
No 74
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.67 E-value=0.0085 Score=45.26 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=55.7
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
.+...+|.+|...|+|++|.+.+++........ |. + ....+..+...+.++...|++.+|..++.+|.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~-~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQL-GD-D---HPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-TT-H---HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-CC-C---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456789999999999999999999998874322 22 2 2456788888899999999999999999998765
No 75
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.52 Score=43.40 Aligned_cols=240 Identities=15% Similarity=0.226 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHhhcCCCccchh--hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 31 DPEGALAGFAEVVAMEPEKAEW--GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~--~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++|.++|.+.-+.-.=.-.| .-.+.-++++++.+.|.-.++-..|..-.+-+ ..+.+.....++...++.+.. .
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~-~ 106 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTD-M 106 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHh-h
Confidence 3566666666553322100122 23456666777777777666666666666655 444555555555555555543 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhh-ccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~-g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (428)
+ .=++-.+-...+|.+|+.. .+++.|...++..-........+ +.--..++-
T Consensus 107 G---------------------rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~------ssANKC~lK 159 (288)
T KOG1586|consen 107 G---------------------RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV------SSANKCLLK 159 (288)
T ss_pred h---------------------HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh------hhHHHHHHH
Confidence 1 0001112244678888854 77888887777777665432111 111123333
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 014255 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYL 267 (428)
Q Consensus 188 e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~ 267 (428)
-+.+...+++|++|-..|.+.-.. +..+|.++ ++ |-.||+.+
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~--s~~n~LLK-----ys------------~KdyflkA------------------- 201 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARS--SLDNNLLK-----YS------------AKDYFLKA------------------- 201 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHH-----hH------------HHHHHHHH-------------------
Confidence 344555667777777766654211 11122111 00 11123332
Q ss_pred HHHHHhhCCCCCC---CC-cccccc-cCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHH
Q 014255 268 VLANMLMESEVNP---FD-GQEAKP-YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDL 337 (428)
Q Consensus 268 ~L~~lL~~~~~~~---~~-~~~~~~-~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l 337 (428)
.||-+-..+.++. +. -++.-| |...++...++.|+.+....|...|.+....+...-..|.+.-.++-.+
T Consensus 202 gLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlki 276 (288)
T KOG1586|consen 202 GLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKI 276 (288)
T ss_pred HHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 2232211111110 00 001111 3445678899999999999999999999988876555665544444333
No 76
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.36 Score=50.42 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014255 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (428)
+-.+|+..|.++-.... ++.| ++-|+|+.|+..++|+++..+++.+...- +- +-..-++...++=.+.+ +.
T Consensus 334 ~~~~A~~~~~klp~h~~-nt~w---vl~q~GrayFEl~~Y~~a~~~F~~~r~~~-p~--rv~~meiyST~LWHLq~--~v 404 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHY-NTGW---VLSQLGRAYFELIEYDQAERIFSLVRRIE-PY--RVKGMEIYSTTLWHLQD--EV 404 (638)
T ss_pred HHHHHHHHHHhhHHhcC-CchH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc--cccchhHHHHHHHHHHh--hH
Confidence 45799999999644433 3446 67899999999999999999998887753 31 22223333333333322 10
Q ss_pred ChhHHHHHHHHHHHHHHHhhhh-hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHH
Q 014255 111 NFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~~~-kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~ 189 (428)
..+ -++.+.+....+. --| .-+|+.|--++|++.|.+..+..-..-. .+- --|-+..
T Consensus 405 ~Ls------~Laq~Li~~~~~sPesW----ca~GNcfSLQkdh~~Aik~f~RAiQldp-----------~fa-YayTLlG 462 (638)
T KOG1126|consen 405 ALS------YLAQDLIDTDPNSPESW----CALGNCFSLQKDHDTAIKCFKRAIQLDP-----------RFA-YAYTLLG 462 (638)
T ss_pred HHH------HHHHHHHhhCCCCcHHH----HHhcchhhhhhHHHHHHHHHHHhhccCC-----------ccc-hhhhhcC
Confidence 111 1111222211111 123 2578888889999999998887766521 111 1122222
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
.=+.....+++|..++++|..+ +|+.-.. |.-.|.+|+.+++|..|.-+|..|++
T Consensus 463 hE~~~~ee~d~a~~~fr~Al~~-----~~rhYnA-wYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 463 HESIATEEFDKAMKSFRKALGV-----DPRHYNA-WYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred ChhhhhHHHHhHHHHHHhhhcC-----CchhhHH-HHhhhhheeccchhhHHHHHHHhhhc
Confidence 2345667899999999998754 3443222 23348899999999999999999976
No 77
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.63 E-value=0.54 Score=52.64 Aligned_cols=215 Identities=10% Similarity=-0.050 Sum_probs=130.0
Q ss_pred CCCHHHHHHHHHHhhcCCCc-----cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPE-----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~-----~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (428)
.+++++|...+......-.. .......+...++.++...|+++++..++...+... +........-....+...
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEV 500 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHH
Confidence 45678888888776542111 122223344456788899999999999999887754 321111011111222111
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHH
Q 014255 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (428)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (428)
... .+ +.+.....++.+++..+..+...........+|.++...|++++|...+.+....+....+. + ......
T Consensus 501 ~~~-~G-~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~---~~~~~~ 574 (903)
T PRK04841 501 HHC-KG-ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-Q---LPMHEF 574 (903)
T ss_pred HHH-cC-CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-c---ccHHHH
Confidence 111 11 24455666666666544332222223455689999999999999999998888776442111 1 011122
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 184 ~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
.+...+.++...|++..|...+..+........ +..........|.++...|++..|...+-++...
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 234456778888999999999998866544333 2222333345678888999999999988777543
No 78
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.58 E-value=0.21 Score=56.24 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=106.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh------------hHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR------------NYSEK 95 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k------------~~~~k 95 (428)
..+++++|++.|++++...+... ....++.++.+.|+++++.+++.+.+..- +.... ...++
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~-----a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNE-----DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 35668888888887765543321 23455667777777777777776666542 21110 11111
Q ss_pred HHHHHHHHhcCCCC--------------CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHH
Q 014255 96 CINNIMDFVSGSAS--------------QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKE 161 (428)
Q Consensus 96 ~v~~il~~~~~~~~--------------~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~e 161 (428)
.+..+-..+...|+ ...+.....++.+++. ..+.. .....+|.++.+.|++++|.+.+.+
T Consensus 595 Al~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 595 ALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNS---NYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11111111111122 0111222222222221 11111 3456899999999999999999999
Q ss_pred HHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHH
Q 014255 162 LHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADA 241 (428)
Q Consensus 162 l~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A 241 (428)
....-++ + .+++...+.++...|++..|...++++...... .+.+....|.+...+.++..|
T Consensus 669 AL~l~P~-----~-------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~------~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 669 AHKGLPD-----D-------PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN------QALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred HHHhCCC-----C-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CchhhhhhhHHHHHHHHHHHH
Confidence 8887431 1 356666778899999999999999998755322 223333445555555555555
Q ss_pred HHHHHHH
Q 014255 242 ATDFFEA 248 (428)
Q Consensus 242 ~~~f~ea 248 (428)
.+.+.-.
T Consensus 731 ~~~~~r~ 737 (987)
T PRK09782 731 HEEVGRR 737 (987)
T ss_pred HHHHHHH
Confidence 5554444
No 79
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.58 E-value=0.027 Score=53.54 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=81.4
Q ss_pred HHHHHHhhccc--CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHH
Q 014255 17 RVLCSILEKGL--VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (428)
Q Consensus 17 ~~~~~~~ak~~--~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (428)
+...|..|-++ +++++++|+..|+.+++..|+. .....+...++.+|+..|+++++++.|..+++.+ +.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~------- 212 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PK------- 212 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-------
Confidence 35566677765 4578999999999999988754 2245788999999999999999999998888776 32
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccC
Q 014255 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (428)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~ 168 (428)
+|. . . ...+++|.++.+.|++++|.+.++++.+..++
T Consensus 213 ------------s~~-----~---------------~-----dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 213 ------------SPK-----A---------------A-----DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred ------------Ccc-----h---------------h-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 111 0 0 01346788899999999999999999888654
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.57 E-value=0.073 Score=48.33 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
..+.++++..++..+..+|++ ..+...++.+|...|+++++.+.|.+.+...
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~ 103 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN----SEQWALLGEYYLWRNDYDNALLAYRQALQLR 103 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456799999999999998865 4466889999999999999999999888875
No 81
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.57 E-value=0.099 Score=51.66 Aligned_cols=215 Identities=12% Similarity=0.036 Sum_probs=123.8
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
+.+|...-++.|+..+....++...-.-++.|++..|+-.++|++++++-+.=+..-+....+..-+|+.-++.+.+.-.
T Consensus 29 k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 45678999999999998776665545667889999999999999999987765555423233444444444443332210
Q ss_pred C--CCChhHHHHHHHHHHHHHHHhhhhhH-HHHHhHHHHHHHHhhcc--------------------HHHHHHHHHHHHh
Q 014255 108 A--SQNFSLLREFYQTTLKALEEAKNERL-WFKTNLKLCKIWFDMGE--------------------YGRMSKILKELHK 164 (428)
Q Consensus 108 ~--~~~~~~~~~~~~~~le~l~~~~~~kl-~lr~~~~La~l~~~~g~--------------------~~~A~~~l~el~~ 164 (428)
. +...-++...++.+++. .+|+ --|..++||.+|...|+ ++.|.+++.+=.+
T Consensus 109 G~fdeA~~cc~rhLd~areL-----gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFAREL-----GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred cccchHHHHHHHHhHHHHHH-----hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 0 11122334444444442 2232 22667899999988875 2335556555444
Q ss_pred hccCCC------------CC-----cchhhhhhHHHHHH--------------------HHHHHHHhhcCHHHHHHHHHH
Q 014255 165 SCQRED------------GT-----DDQKKGSQLLEVYA--------------------IEIQMYTETKNNKKLKQLYQK 207 (428)
Q Consensus 165 ~~~~~~------------~~-----~d~~~~~~~~e~~l--------------------~e~~l~~~~~d~~ka~~~l~~ 207 (428)
...+.. |- .| -...+..+- .....|..+|+++-|.+.|..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGd---f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGD---FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeecc---HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 433220 00 00 011112211 122235566778888888888
Q ss_pred HHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 208 a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+..+.-.+.+..+-+.--..-|-.+-..++|.+|..||..-+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA 303 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7666555555444443333445556667788888888876543
No 82
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.55 E-value=0.016 Score=44.62 Aligned_cols=82 Identities=20% Similarity=0.381 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
+++++.|+..|+++++.++.+. ....+-.++.+|++.|+++++++++++ .+.- +
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~---------------------- 55 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-P---------------------- 55 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-H----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-C----------------------
Confidence 4679999999999999876422 245667799999999999999998887 3321 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKE 161 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~e 161 (428)
. . ..+...+|..+++.|+|++|.+.|.+
T Consensus 56 ~--~-----------------------~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 56 S--N-----------------------PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp C--H-----------------------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred C--C-----------------------HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 1 0 01123568889999999999998875
No 83
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.53 E-value=0.63 Score=52.09 Aligned_cols=225 Identities=11% Similarity=0.067 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHHhhcCCCc--cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHH-HHh
Q 014255 29 ETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN-YSEKCINNIM-DFV 104 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~--~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~-~~~k~v~~il-~~~ 104 (428)
.+++++|...+.+.+....+ ...+...++..++.++...|+++++.+++...+...+..-... .....+...+ ...
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 55677777777777654321 2223345667778888888888888888888777652211000 0011111111 111
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcch---------
Q 014255 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ--------- 175 (428)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~--------- 175 (428)
.. .+ +.+.....+..+++..+... ..........++.++...|++++|...+.+..............
T Consensus 584 ~~-~G-~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 584 WE-WA-RLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HH-hc-CHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 11 11 23344445555544333211 11223344568888999999999888777765432211000000
Q ss_pred ------------------------hhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHh
Q 014255 176 ------------------------KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM 231 (428)
Q Consensus 176 ------------------------~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~ 231 (428)
.............++++...|++.+|...+.++.........+...+......|..
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 00000111234456677788888888888888866544444444455556667888
Q ss_pred HHhhhcHHHHHHHHHHHHHhhhhhc
Q 014255 232 HMAERQWADAATDFFEAFKNYDEAG 256 (428)
Q Consensus 232 ~~~~~~y~~A~~~f~ea~~~~~~~~ 256 (428)
+...|++.+|...|.++...+...+
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCccc
Confidence 8888888888888888877654443
No 84
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=0.038 Score=57.40 Aligned_cols=148 Identities=15% Similarity=0.214 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~ 111 (428)
++.|.+.|.+.+..++.+ .+|..-+|.+|.++++++.+.-++++-+... |. +.+ ++..+...+.....
T Consensus 471 ~d~a~~~fr~Al~~~~rh----YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~---nsv--i~~~~g~~~~~~k~-- 538 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRH----YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PS---NSV--ILCHIGRIQHQLKR-- 538 (638)
T ss_pred HHhHHHHHHhhhcCCchh----hHHHHhhhhheeccchhhHHHHHHHhhhcCC-cc---chh--HHhhhhHHHHHhhh--
Confidence 445555555554444332 5667778999999999999999998887764 43 111 22222222221111
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHH
Q 014255 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (428)
Q Consensus 112 ~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l 191 (428)
.+....+++.+.. -+.+--+ +..+-|.+++..|+|++|+..|++++....+ + .-++.+..++
T Consensus 539 ~d~AL~~~~~A~~-----ld~kn~l-~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-----e-------s~v~~llgki 600 (638)
T KOG1126|consen 539 KDKALQLYEKAIH-----LDPKNPL-CKYHRASILFSLGRYVEALQELEELKELVPQ-----E-------SSVFALLGKI 600 (638)
T ss_pred hhHHHHHHHHHHh-----cCCCCch-hHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-----h-------HHHHHHHHHH
Confidence 2233444444322 1333222 1237789999999999999999999999752 3 2467777899
Q ss_pred HHhhcCHHHHHHHHHHHH
Q 014255 192 YTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 192 ~~~~~d~~ka~~~l~~a~ 209 (428)
|..+|+...|.--+.-|.
T Consensus 601 ~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 601 YKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHccchHHHHhhHHHh
Confidence 999999888766555443
No 85
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.50 E-value=0.7 Score=50.95 Aligned_cols=203 Identities=9% Similarity=-0.015 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhcCCC---ccchhhHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 33 EGALAGFAEVVAMEP---EKAEWGFKALKQ-TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 33 ~~Ai~~~~~ii~~~~---~~~~~~~k~l~~-l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
++|++.|+..++..+ +......++... ++.+ ...|+++++++.|+.++..- +.. +......+ .+.+....
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~~-~~~-P~~a~~~l---a~~yl~~g 286 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISEYQRLKAEG-QII-PPWAQRWV---ASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhccC-CCC-CHHHHHHH---HHHHHhcC
Confidence 789999999886532 221112233222 4444 57799999999999987752 211 22222112 12222111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhh-hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCC---CCcchhhhhhHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRED---GTDDQKKGSQLLEV 184 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~-kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~---~~~d~~~~~~~~e~ 184 (428)
+.+.....++.+++ ..... .........|+..+.+.|++++|...+.++....+... +...........+.
T Consensus 287 --~~e~A~~~l~~~l~---~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 287 --QPEKAQSILTELFY---HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred --CcHHHHHHHHHHhh---cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 23345555555433 11111 01122334677788999999999999999887642100 00000001234567
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
+...+.++...|++++|...++++..... .- ..+....|.++...+++..|...+-.+....
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P-----~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAP-----GN-QGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 77888899999999999999998865422 11 2344555778888999999999999886643
No 86
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.48 E-value=0.042 Score=41.11 Aligned_cols=94 Identities=14% Similarity=0.206 Sum_probs=70.3
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..+...|++++|.+.+.+....... + ...+...+.++...+++.+|...+..+...... ++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~ 68 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-----N-------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NA 68 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-----c-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--ch
Confidence 457899999999999999999998777431 1 145666778888899999999999887654322 11
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
......|.++...+++..|...|..+..
T Consensus 69 ----~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 69 ----KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred ----hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 2344457778888999999988887754
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.42 E-value=0.07 Score=46.83 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=80.7
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
....+|..+...|++++|...+.+......++ ......+...+.++...|++.+|..++.++..+......
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 34588999999999999999999988774321 122346677788999999999999999999866433222
Q ss_pred -hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 218 -PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 218 -p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
....+.+....|..+...|+|..|..+|-+++..|..
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 2234566666677777899999999999888776654
No 88
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.83 Score=42.62 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=129.3
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCc--cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 014255 25 KGLVETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (428)
Q Consensus 25 k~~~~~~~~~Ai~~~~~ii~~~~~--~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~ 102 (428)
+.....++++-++.+.++++..+. -++..+-.++|+.-.....|+.+.+..+++.|...| | +..++.++---.++
T Consensus 21 r~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p--~S~RV~~lkam~lE 97 (289)
T KOG3060|consen 21 REETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-P--GSKRVGKLKAMLLE 97 (289)
T ss_pred HhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-C--CChhHHHHHHHHHH
Confidence 455667899999999999876542 234456889999999999999999999999999988 5 23344444444444
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHH
Q 014255 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (428)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~ 182 (428)
.... .+-..+.|+-.++- + -.-.-+..|...+...+|+-.+|.+-+.+..+.+.. | -
T Consensus 98 a~~~-----~~~A~e~y~~lL~d-----d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-----D-------~ 154 (289)
T KOG3060|consen 98 ATGN-----YKEAIEYYESLLED-----D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-----D-------Q 154 (289)
T ss_pred Hhhc-----hhhHHHHHHHHhcc-----C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-----c-------H
Confidence 3322 33466777776551 1 111111224445666788888888888888877753 3 3
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhH---HHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM---GIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 183 e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~---~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
|.....+.+|+..|++.+|---|+...-+.+ ..|... +.++...|- ..|+..|.++|-.+.+.
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P--~n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLLIQP--FNPLYFQRLAEVLYTQGG----AENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHh
Confidence 5666778899999999999888877643321 134443 333333332 44788888888888663
No 89
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=96.38 E-value=0.025 Score=51.39 Aligned_cols=105 Identities=18% Similarity=0.357 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCCCCcc-cccc--cCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHH
Q 014255 257 NQRRIQCLKYLVLANMLMESEVNPFDGQ-EAKP--YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNY 333 (428)
Q Consensus 257 ~~~~~~~l~y~~L~~lL~~~~~~~~~~~-~~~~--~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~ 333 (428)
.+....+..|.+|..+..+. ...|... ...+ ...+|.+.....+..++.+|++..|.+..++ ...|.+..+
T Consensus 95 ~~~~~ef~~y~lL~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~~al~l~~a~~~gny~~ff~l~~~-----~~~~~l~~~ 168 (204)
T PF03399_consen 95 SPNEAEFIAYYLLYLLCQNN-IPDFHMELELLPSEILSSPYIQFALELCRALMEGNYVRFFRLYRS-----KSAPYLFAC 168 (204)
T ss_dssp -TTHHHHHHHHHHHTT-T----THHHHHHTTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHT------TTS-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHccc-chHHHHHHHHCchhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-----cCCChHHHH
Confidence 34566777788887664331 1112111 0111 2345777777789999999999999987722 244555555
Q ss_pred HH-HHHHHHHHHHHHHhhccccc-cchhhHHhHhCC
Q 014255 334 IE-DLLKNVRTQVLLKLIKPYTR-IRIPFISKELNV 367 (428)
Q Consensus 334 ~~-~l~~~i~~~~l~~~~~pYs~-I~l~~iA~~l~l 367 (428)
+- .+...+|.+++..+.+.|.+ |+++.+++.|+.
T Consensus 169 l~~~~~~~iR~~al~~i~~ay~~~i~l~~l~~~L~F 204 (204)
T PF03399_consen 169 LMERFFNRIRLRALQSISKAYRSSIPLSFLAELLGF 204 (204)
T ss_dssp HHGGGHHHHHHHHHHHHHHHS-T-EEHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCC
Confidence 44 48899999999999999998 999999998874
No 90
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.33 E-value=0.011 Score=43.00 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.+++++|++.|+.+++..|++ ..+...++.++..+|+++++.++|+..+...
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDN----PEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTH----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457999999999999988753 6788999999999999999999999998764
No 91
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.64 Score=50.69 Aligned_cols=210 Identities=19% Similarity=0.269 Sum_probs=118.6
Q ss_pred hhhHHHHHHhhcccCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHH
Q 014255 14 TVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (428)
Q Consensus 14 ~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~ 93 (428)
+|.-.-|+|...+-.+...+.|.....++++..+.+ ..+.-.+++++-...-|-. +..|..-+..+... .+.--
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d----~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~-~~~ip 451 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD----SEAWLELAQLLEQTDPWAS-LDAYGNALDILESK-GKQIP 451 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc----HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHc-CCCCC
Confidence 445555666655533344566666666666555433 3445556666666555555 66666666554222 22222
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh--hhh--hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCC
Q 014255 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA--KNE--RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (428)
Q Consensus 94 ~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~--~~~--kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~ 169 (428)
-++.+++.-.--... +.+.....+..++..+... .++ .+-+.+.++||.+++..+++..|.+.+.++.++.+.
T Consensus 452 ~E~LNNvaslhf~~g--~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~- 528 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLG--NIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG- 528 (1018)
T ss_pred HHHHHhHHHHHHHhc--ChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-
Confidence 333444332211000 1222233333333332211 122 144567789999999999999999999999998641
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHH
Q 014255 170 DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (428)
Q Consensus 170 ~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (428)
.++-++....+....++...|...+..+..+.+..++ .+..-|-.|+...+|..|-..|--.+
T Consensus 529 -----------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~------arsl~G~~~l~k~~~~~a~k~f~~i~ 591 (1018)
T KOG2002|consen 529 -----------YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN------ARSLLGNLHLKKSEWKPAKKKFETIL 591 (1018)
T ss_pred -----------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH------HHHHHHHHHHhhhhhcccccHHHHHH
Confidence 3455555444444567888998888888776554332 23344667777777777777665554
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.31 E-value=0.43 Score=43.27 Aligned_cols=114 Identities=14% Similarity=0.166 Sum_probs=78.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHH-HHhhcC--HHHHHHHHHHHHhhhccCC
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKN--NKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l-~~~~~d--~~ka~~~l~~a~~~~~~i~ 216 (428)
..||.+|...|++++|...+......-.+ + .+++...+.+ +...|+ ..+|...++++.+....
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-----~-------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-- 142 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLRGE-----N-------AELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-- 142 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--
Confidence 47899999999999999999999888431 1 3455555664 466676 59999999998765322
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHh
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 273 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL 273 (428)
++ ......|..++..|+|.+|..+|-.+.+.-.. ++ ++..++.-+--+.+|
T Consensus 143 ~~----~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~-~~-~r~~~i~~i~~a~~~ 193 (198)
T PRK10370 143 EV----TALMLLASDAFMQADYAQAIELWQKVLDLNSP-RV-NRTQLVESINMAKLL 193 (198)
T ss_pred Ch----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Cc-cHHHHHHHHHHHHHH
Confidence 12 23344588889999999999999998764322 22 333333444444444
No 93
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.31 E-value=0.0086 Score=43.79 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
..+++++|++.|++++..+|++ ..+...++.+|.+.|+++++.+.+.+++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN----PEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578999999999999998865 4566689999999999999999999988865
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.30 E-value=0.22 Score=48.11 Aligned_cols=188 Identities=11% Similarity=0.002 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|+..|.+.++.+|++ ..++..++.++...|+++++.+.|.+.+... |....+ ..++...+....
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a-----~~~lg~~l~~~g 146 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYA-----YLNRGIALYYGG 146 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH-----HHHHHHHHHHCC
Confidence 467899999999999998765 5678899999999999999999999999875 543222 122222221111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+...+.++.+++. ..+... +. -...+....+++++|...+.+....... + ... ...
T Consensus 147 --~~~eA~~~~~~al~~---~P~~~~--~~--~~~~l~~~~~~~~~A~~~l~~~~~~~~~-----~----~~~----~~~ 204 (296)
T PRK11189 147 --RYELAQDDLLAFYQD---DPNDPY--RA--LWLYLAESKLDPKQAKENLKQRYEKLDK-----E----QWG----WNI 204 (296)
T ss_pred --CHHHHHHHHHHHHHh---CCCCHH--HH--HHHHHHHccCCHHHHHHHHHHHHhhCCc-----c----ccH----HHH
Confidence 244555656555442 222211 10 1112344568899999888665433211 1 001 111
Q ss_pred HHHHHhhcCH--HHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 189 IQMYTETKNN--KKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 189 ~~l~~~~~d~--~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
.++.+|++ ..+-..+..+......+ .|+ ....+.+-|.++...|++.+|..+|-.+....
T Consensus 205 --~~~~lg~~~~~~~~~~~~~~~~~~~~l-~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 205 --VEFYLGKISEETLMERLKAGATDNTEL-AER-LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred --HHHHccCCCHHHHHHHHHhcCCCcHHH-HHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12223332 22222222221111111 222 23356667999999999999999999997754
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.23 E-value=0.76 Score=45.34 Aligned_cols=186 Identities=12% Similarity=0.224 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHH----HHHHHHHh
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC----INNIMDFV 104 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~----v~~il~~~ 104 (428)
+.|+..|.....+..+..+-. .+++.-..++|.+.|+|..+..+...+.+- +..+....+.. .+.+++..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~----~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka--~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRH----PEVLRLALRAYIRLGAWQALLAILPKLRKA--GLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHc--cCCChHHHHHHHHHHHHHHHHHH
Confidence 345666666666666555433 456666678888888888888888888775 33444333333 23333333
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHH
Q 014255 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (428)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (428)
.+..+ .+-+..+-+..-. ..|.-..+..-++.-+.+.|++++|.+++.+..+...+ + . +...
T Consensus 240 ~~~~~--~~gL~~~W~~~pr------~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-----~----~-L~~~ 301 (400)
T COG3071 240 RDDNG--SEGLKTWWKNQPR------KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-----P----R-LCRL 301 (400)
T ss_pred hcccc--chHHHHHHHhccH------HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----h----h-HHHH
Confidence 32111 1111111111111 11111244557788889999999999999999888542 2 2 1111
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHH
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (428)
-=+...+|..+.....++..+-.. .+| .+...-|.+++.++.|.+|..+|-.|.
T Consensus 302 -----~~~l~~~d~~~l~k~~e~~l~~h~--~~p----~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 302 -----IPRLRPGDPEPLIKAAEKWLKQHP--EDP----LLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred -----HhhcCCCCchHHHHHHHHHHHhCC--CCh----hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 113456777776666666543211 124 456667888888999999988888774
No 96
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=1.7 Score=43.98 Aligned_cols=200 Identities=14% Similarity=0.159 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHhhcCCC---ccchhhHH---------HHHHH------------------HHHHHHhCCHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEP---EKAEWGFK---------ALKQT------------------VKLYYRLGKYKEMMDAYR 78 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~---~~~~~~~k---------~l~~l------------------~~l~~~~~~~~~l~e~~~ 78 (428)
+-|+++|+..|++|.+.+| ++.+--.. .+..| +.-|.-.++.++++.+++
T Consensus 275 ~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFk 354 (559)
T KOG1155|consen 275 QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFK 354 (559)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHH
Confidence 4578999999999999887 33221111 11222 345567778899999999
Q ss_pred HHHHHHhhhh---------------hhhHHHHHHHHHHHHhcCCCC--------C------ChhHHHHHHHHHHHHHHHh
Q 014255 79 EMLTYIKSAV---------------TRNYSEKCINNIMDFVSGSAS--------Q------NFSLLREFYQTTLKALEEA 129 (428)
Q Consensus 79 ~l~~~~~~~~---------------~k~~~~k~v~~il~~~~~~~~--------~------~~~~~~~~~~~~le~l~~~ 129 (428)
.-+++. +.- +..++-.+.|..++.... | . ......-++..+.++ + .
T Consensus 355 RALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~--DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-k-P 429 (559)
T KOG1155|consen 355 RALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR--DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-K-P 429 (559)
T ss_pred HHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch--hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-C-C
Confidence 988875 321 344555556666654321 1 0 011122233333221 1 1
Q ss_pred hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 130 ~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
++.|+| .-||+.|...++.++|.+.+...-...+. + -..+...+++|-.+++..+|..+|.+..
T Consensus 430 nDsRlw----~aLG~CY~kl~~~~eAiKCykrai~~~dt-----e-------~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 430 NDSRLW----VALGECYEKLNRLEEAIKCYKRAILLGDT-----E-------GSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred CchHHH----HHHHHHHHHhccHHHHHHHHHHHHhcccc-----c-------hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555 46899999999999999999988777431 1 1244556789999999999999999886
Q ss_pred hhhc--cCCCh-hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 210 AIKS--AIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 210 ~~~~--~i~~p-~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
.... +.-+| .+.+.+.+ +..+...+||+.|..|-..+...
T Consensus 494 ~~~~~eg~~~~~t~ka~~fL--A~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 494 EVSELEGEIDDETIKARLFL--AEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHhhcccchHHHHHHHHH--HHHHHhhcchHHHHHHHHHHhcC
Confidence 5432 22234 45566554 67777888999998877776543
No 97
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.18 E-value=0.88 Score=42.70 Aligned_cols=167 Identities=7% Similarity=0.070 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh
Q 014255 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (428)
Q Consensus 52 ~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~ 131 (428)
|....+-..+.-+...|+|+++.+.|+.+++.. |+... . .
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----------------------P~s~~--a-----------~---- 69 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----------------------PFGPY--S-----------Q---- 69 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------CCChH--H-----------H----
Confidence 345666677888889999999999999887765 33110 0 0
Q ss_pred hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHH-------------hhcCH
Q 014255 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT-------------ETKNN 198 (428)
Q Consensus 132 ~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~-------------~~~d~ 198 (428)
...+.+|..|+..|+|++|...++++.+.-++.+..+. +.+....+.... ..+|.
T Consensus 70 -----~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~-------a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~ 137 (243)
T PRK10866 70 -----QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY-------VLYMRGLTNMALDDSALQGFFGVDRSDRDP 137 (243)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH-------HHHHHHHhhhhcchhhhhhccCCCccccCH
Confidence 12458999999999999999999999988765433321 111111111111 22355
Q ss_pred HHHHHHHHHHHhhhccCCC----hhhH----------HHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 014255 199 KKLKQLYQKALAIKSAIPH----PRIM----------GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264 (428)
Q Consensus 199 ~ka~~~l~~a~~~~~~i~~----p~~~----------~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l 264 (428)
..++.++..-..+....|+ |... +.--..-|.+|...++|..|..-|-...+.|+... ...++|
T Consensus 138 ~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~--~~~eal 215 (243)
T PRK10866 138 QHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ--ATRDAL 215 (243)
T ss_pred HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc--hHHHHH
Confidence 6677666666666555553 2111 22224567888889999999999999988885433 344556
Q ss_pred HHHHHHHH
Q 014255 265 KYLVLANM 272 (428)
Q Consensus 265 ~y~~L~~l 272 (428)
.+++-+-.
T Consensus 216 ~~l~~ay~ 223 (243)
T PRK10866 216 PLMENAYR 223 (243)
T ss_pred HHHHHHHH
Confidence 66655543
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.17 E-value=1.5 Score=43.10 Aligned_cols=79 Identities=11% Similarity=0.036 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhcc---CCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcch-hHHH
Q 014255 187 IEIQMYTETKNNKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RRIQ 262 (428)
Q Consensus 187 ~e~~l~~~~~d~~ka~~~l~~a~~~~~~---i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~-~~~~ 262 (428)
..++.+...|+...|...+......... .........+..+.+..+...|||.+|...+.++.......|-. ...+
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~~ 348 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQRD 348 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4567788889999999999887665544 11122334566788999999999999999999998876665543 4445
Q ss_pred HHH
Q 014255 263 CLK 265 (428)
Q Consensus 263 ~l~ 265 (428)
++.
T Consensus 349 ~~~ 351 (355)
T cd05804 349 VFE 351 (355)
T ss_pred HHH
Confidence 443
No 99
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.15 E-value=0.15 Score=55.44 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=40.2
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~ 220 (428)
-++..|...|++++|.+++++.... + + ..++-..+..|...|++..|+.+.++.... +|.-
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~~~~---p----~-------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~-----~p~~ 527 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRAPFK---P----T-------VNMWAALLTACRIHKNLELGRLAAEKLYGM-----GPEK 527 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHCCCC---C----C-------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-----CCCC
Confidence 4556666666666666665543110 0 1 112333334555666666666655444322 1110
Q ss_pred HHHHHHhhhHhHHhhhcHHHHHHHHHH
Q 014255 221 MGIIRECGGKMHMAERQWADAATDFFE 247 (428)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~e 247 (428)
.+ .+...+.+|...|+|.+|.+.|-+
T Consensus 528 ~~-~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 528 LN-NYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred Cc-chHHHHHHHHhCCCHHHHHHHHHH
Confidence 00 111223345555666666555544
No 100
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.12 E-value=0.065 Score=40.28 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh-hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR-IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 181 ~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~-~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
...++...+.+|...|++.+|..++.+|..+.....+.. ..+......|.++...|+|.+|..+|-++++-+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456777788999999999999999999988855555432 346666677899999999999999999997644
No 101
>PRK12370 invasion protein regulator; Provisional
Probab=96.10 E-value=0.37 Score=50.93 Aligned_cols=120 Identities=9% Similarity=-0.071 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|++.++.+|++ ..++..++.++...|+++++++.+.+.+... |.-....... ..-.+..
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~----~~~~~~~-- 419 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPIS----ADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITK----LWITYYH-- 419 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHH----HHHHHhc--
Confidence 567899999999999998765 4567888999999999999999999998875 5422111111 1112211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
+ ..+.....++.+++. ...+- ......+|.++...|++++|...+.++...
T Consensus 420 g-~~eeA~~~~~~~l~~---~~p~~--~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 420 T-GIDDAIRLGDELRSQ---HLQDN--PILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred c-CHHHHHHHHHHHHHh---ccccC--HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 1 122233333333221 10001 112346788888888888888888776554
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.04 E-value=0.25 Score=41.14 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=74.7
Q ss_pred HHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHH
Q 014255 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (428)
Q Consensus 38 ~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~ 117 (428)
.|+.++..+|++ ..++..++..+...|+++++.+.++.+++.. |+ +.
T Consensus 5 ~~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------p~-~~----- 51 (135)
T TIGR02552 5 TLKDLLGLDSEQ----LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-----------------------PY-NS----- 51 (135)
T ss_pred hHHHHHcCChhh----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----------------------CC-cH-----
Confidence 466666666543 3456778888888899988888887766543 22 00
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcC
Q 014255 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (428)
Q Consensus 118 ~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d 197 (428)
.....+|.++...|++++|.+.+........+ ..+.+...+.++...|+
T Consensus 52 -------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 52 -------------------RYWLGLAACCQMLKEYEEAIDAYALAAALDPD------------DPRPYFHAAECLLALGE 100 (135)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------ChHHHHHHHHHHHHcCC
Confidence 01236778888888888888888877666321 13445556677788888
Q ss_pred HHHHHHHHHHHHhhh
Q 014255 198 NKKLKQLYQKALAIK 212 (428)
Q Consensus 198 ~~ka~~~l~~a~~~~ 212 (428)
+.+|...++.+....
T Consensus 101 ~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 101 PESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888776543
No 103
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.02 E-value=0.59 Score=50.48 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYR 78 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~ 78 (428)
..+|+++|++.+.+||.++|.. ..++.+|+.+|-++|+.++++..-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~----~~ay~tL~~IyEqrGd~eK~l~~~l 197 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRN----PIAYYTLGEIYEQRGDIEKALNFWL 197 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccc----hhhHHHHHHHHHHcccHHHHHHHHH
Confidence 5678999999999999998754 6788999999999998888775543
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.01 E-value=0.56 Score=48.32 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=67.1
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhhhccC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIKSAI 215 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~-d~~ka~~~l~~a~~~~~~i 215 (428)
.+..-||-+|.-.|+|+.|.+.++.....-+. | ..++.-+-. -++-| ...+|..+|++|..+....
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-----d----~~lWNRLGA----tLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-----D----YLLWNRLGA----TLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-----h----HHHHHHhhH----HhcCCcccHHHHHHHHHHHhcCCCe
Confidence 55668999999999999999999887766321 2 223332211 22333 4688999999998765432
Q ss_pred CChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 216 ~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+.+++ =.|+.++..|.|++|.++|++++.
T Consensus 498 ----VR~Ry--NlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 498 ----VRVRY--NLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred ----eeeeh--hhhhhhhhhhhHHHHHHHHHHHHH
Confidence 23333 348999999999999999999974
No 105
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.99 E-value=0.05 Score=39.35 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=49.4
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
+.+|..++..|+|++|.+.++++....+ .-.+.+...+.++...|++.+|..+++++...
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP------------DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3688999999999999999999988842 13567778888999999999999999988654
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.92 E-value=0.22 Score=40.05 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhH
Q 014255 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (428)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl 134 (428)
+.+..++..+...|+++++.+.+..++... |+.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~~~----------------------~ 37 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----------------------PKST----------------------Y 37 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------------CCcc----------------------c
Confidence 566788899999999999999988887653 2200 0
Q ss_pred HHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 135 ~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
.....+.+|.++...|++++|.+.+.++....++. ....+.+...+.++...|++..|...++.+...
T Consensus 38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 38 APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 00123478999999999999999999998875321 122345666677888999999999999887544
No 107
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=95.90 E-value=0.057 Score=53.95 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=100.4
Q ss_pred HHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCC--CcccccccCCCcchHHHH
Q 014255 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPF--DGQEAKPYKNDPEILAMT 299 (428)
Q Consensus 222 ~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~~~--~~~~~~~~~~~~~~~~l~ 299 (428)
..+++..+++.++.||..+=-++-...+.-|.+.+......+..|-+|.-|++.+..+.. -.......+.++.+.--.
T Consensus 348 veVYEtHARIALEkGD~~EfNQCQtQLk~LY~egipg~~~EF~AYriLY~i~tkN~~di~sll~~lt~E~ked~~V~hAL 427 (540)
T KOG1861|consen 348 VEVYETHARIALEKGDLEEFNQCQTQLKALYSEGIPGAYLEFTAYRILYYIFTKNYPDILSLLRDLTEEDKEDEAVAHAL 427 (540)
T ss_pred eeeehhhhHHHHhcCCHHHHHHHHHHHHHHHccCCCCchhhHHHHHHHHHHHhcCchHHHHHHHhccHhhccCHHHHHHH
Confidence 445677888888888888777777666666755554467788889999999876543311 111111223345555556
Q ss_pred HHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHH-HHHHHHHHHHHHHHHhhcccc-ccchhhHHhHhCCCh
Q 014255 300 NLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNY-IEDLLKNVRTQVLLKLIKPYT-RIRIPFISKELNVPE 369 (428)
Q Consensus 300 ~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~-~~~l~~~i~~~~l~~~~~pYs-~I~l~~iA~~l~l~~ 369 (428)
++-.|...|+|..|.+.-. .-|.+..| ++.+.++-|..+|..+++.|+ +|+++.|++.|.+++
T Consensus 428 ~vR~A~~~GNY~kFFrLY~-------~AP~M~~yLmdlF~erER~~Al~ii~KsyrP~i~~~fi~~~laf~~ 492 (540)
T KOG1861|consen 428 EVRSAVTLGNYHKFFRLYL-------TAPNMSGYLMDLFLERERKKALTIICKSYRPTITVDFIASELAFDS 492 (540)
T ss_pred HHHHHHHhccHHHHHHHHh-------hcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHhhhhhhch
Confidence 7888999999999997532 23444444 356788999999999999999 999999999888753
No 108
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.37 Score=48.47 Aligned_cols=156 Identities=8% Similarity=0.146 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014255 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (428)
|..+||+.|...|+.+|.| +|+-..||+.|.-.+...-++-+|++-.... |.-+ .+...+.+-+++...
T Consensus 379 Nt~AAi~sYRrAvdi~p~D----yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDs-----Rlw~aLG~CY~kl~~- 447 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPRD----YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDS-----RLWVALGECYEKLNR- 447 (559)
T ss_pred ccHHHHHHHHHHHhcCchh----HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCch-----HHHHHHHHHHHHhcc-
Confidence 4466777777777666533 5555777888888888888888887777664 5322 234444444443211
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHH
Q 014255 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~ 190 (428)
.+-.+.=|..+...=+ +++ ....+||++|.+.+++++|...+.+..+... ..|.-+ ...++..+-.++
T Consensus 448 -~~eAiKCykrai~~~d--te~----~~l~~LakLye~l~d~~eAa~~yek~v~~~~-~eg~~~----~~t~ka~~fLA~ 515 (559)
T KOG1155|consen 448 -LEEAIKCYKRAILLGD--TEG----SALVRLAKLYEELKDLNEAAQYYEKYVEVSE-LEGEID----DETIKARLFLAE 515 (559)
T ss_pred -HHHHHHHHHHHHhccc--cch----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hhcccc----hHHHHHHHHHHH
Confidence 2222332222222100 111 2345899999999999999988877665331 112212 234555556678
Q ss_pred HHHhhcCHHHHHHHHHHHH
Q 014255 191 MYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 191 l~~~~~d~~ka~~~l~~a~ 209 (428)
.+.+.+|+.+|..+.+.+.
T Consensus 516 ~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 516 YFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHhhcchHHHHHHHHHHh
Confidence 8999999999987765543
No 109
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.89 E-value=0.21 Score=48.06 Aligned_cols=164 Identities=16% Similarity=0.117 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHH
Q 014255 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (428)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~l 136 (428)
..|++++|...|.+.++-..+++.++-+ +.+. +=-.+.++...++. | ......|...++.. .. .+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~-~~~d---TfllLskvY~ridQ-P----~~AL~~~~~gld~f---P~-~V-- 290 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPD---TFLLLSKVYQRIDQ-P----ERALLVIGEGLDSF---PF-DV-- 290 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC-Cchh---HHHHHHHHHHHhcc-H----HHHHHHHhhhhhcC---Cc-hh--
Confidence 4689999999999999999999988876 4321 11122333333332 2 22334444433321 11 11
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
....-.|+++.+.|++++|.++++.+.+.- ...+|-+.+++--|+--++.+-|-.+|++.... ++.
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm--G~~ 356 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLH------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQM--GAQ 356 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcC------------CccceeeeeeeeccccCCChHHHHHHHHHHHHh--cCC
Confidence 122367899999999999999999998872 234677777777788888889999999887543 344
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
.|.+-..| |.-++..+.|.-+...|.-+..+..
T Consensus 357 speLf~Ni----gLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 357 SPELFCNI----GLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred ChHHHhhH----HHHHHhhcchhhhHHHHHHHHhhcc
Confidence 55544333 5556667778888888888766543
No 110
>PLN03077 Protein ECB2; Provisional
Probab=95.87 E-value=4 Score=45.60 Aligned_cols=107 Identities=10% Similarity=0.208 Sum_probs=62.7
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-CCh-
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PHP- 218 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i-~~p- 218 (428)
-|...|...|++++|.+++.+. .+ | +..+-..+..|...|+..+|..++++-... ++ ++.
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-----~~----d-------~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~ 590 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-----EK----D-------VVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEV 590 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-----CC----C-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcc
Confidence 5677888889998888877765 11 2 123334456778888888888888765431 22 221
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhC
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~ 275 (428)
...+.+. .+.+.|++.+|.+.|-+.-+.+... |+ ...|.++..++.+
T Consensus 591 T~~~ll~-----a~~~~g~v~ea~~~f~~M~~~~gi~--P~---~~~y~~lv~~l~r 637 (857)
T PLN03077 591 TFISLLC-----ACSRSGMVTQGLEYFHSMEEKYSIT--PN---LKHYACVVDLLGR 637 (857)
T ss_pred cHHHHHH-----HHhhcChHHHHHHHHHHHHHHhCCC--Cc---hHHHHHHHHHHHh
Confidence 1122221 2445678888888887765444222 22 2346666666654
No 111
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.87 E-value=0.13 Score=47.05 Aligned_cols=116 Identities=19% Similarity=0.262 Sum_probs=84.8
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
+..+.||-=|++.||+..|.+-|++.... |+ .....++..+.+|-.+|+.+.|...|++|.++.+.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--------DP----s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-- 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH--------DP----SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-- 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc----ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--
Confidence 34558899999999999999999999887 22 13467778888999999999999999999876432
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHh
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 273 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL 273 (428)
--..+.-++ -..+.+|.|.+|...|..+...+.= +..-..+-.+++|++=
T Consensus 102 ---~GdVLNNYG-~FLC~qg~~~eA~q~F~~Al~~P~Y---~~~s~t~eN~G~Cal~ 151 (250)
T COG3063 102 ---NGDVLNNYG-AFLCAQGRPEEAMQQFERALADPAY---GEPSDTLENLGLCALK 151 (250)
T ss_pred ---ccchhhhhh-HHHHhCCChHHHHHHHHHHHhCCCC---CCcchhhhhhHHHHhh
Confidence 111233444 4455788999999999999764321 1222346678899983
No 112
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.86 E-value=1.2 Score=48.10 Aligned_cols=202 Identities=12% Similarity=0.185 Sum_probs=120.9
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHH--------------
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS-------------- 93 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~-------------- 93 (428)
..+++..|+=.|.++|..+|++ | +.+..=+.+|-+.|+...+++.+.+++.+. |.+.-...
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n--~--~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSN--W--ELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcc--h--HHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999888754 3 555666789999999999999999999887 63322222
Q ss_pred ---HHHHHHHHHHhcCCCC----CChhH------HHHHHHHHHHHHHHhhh------hhHH-------------------
Q 014255 94 ---EKCINNIMDFVSGSAS----QNFSL------LREFYQTTLKALEEAKN------ERLW------------------- 135 (428)
Q Consensus 94 ---~k~v~~il~~~~~~~~----~~~~~------~~~~~~~~le~l~~~~~------~kl~------------------- 135 (428)
+.+++.+-+.++...+ ..... +...++..+.++...++ ..=|
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 3333333333332111 00111 11122222222221111 0001
Q ss_pred ----HHH-hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 136 ----FKT-NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 136 ----lr~-~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
+++ .++++-+.++.++..+++......+... ....+++++..++.+...|.+..|-.++....+
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~-----------~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW-----------VSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC-----------hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 144 4455555555555555443222222211 133578888888888888999888888876542
Q ss_pred hhccCCChhhH-HHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 211 IKSAIPHPRIM-GIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 211 ~~~~i~~p~~~-~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
.|..+ +.++.-.|..++..+.|..|...|..+...
T Consensus 443 ------~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 443 ------REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred ------CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 22222 567777899999999999999999988653
No 113
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.85 E-value=1.9 Score=45.17 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=85.6
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc--
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-- 214 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~-- 214 (428)
-+..-|++.|-..|+++.|..+|...-..|+ -.+|.++..+|++...|+++.|-..++.|..+.++
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdHTP------------TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDHTP------------TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCc------------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 3455788888899999999999988877764 26899999999999999999999888887543211
Q ss_pred -CC--------------------------------ChhhHHHHH--HhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcch-
Q 014255 215 -IP--------------------------------HPRIMGIIR--ECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ- 258 (428)
Q Consensus 215 -i~--------------------------------~p~~~~~i~--~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~- 258 (428)
+. +-.-+.+.| .-.|..+...++|-.|.+.|.+++..|..-.+.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dq 519 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQ 519 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Confidence 00 001122233 346788888899999999999987777543321
Q ss_pred --hHHHHHHHHHHHHH
Q 014255 259 --RRIQCLKYLVLANM 272 (428)
Q Consensus 259 --~~~~~l~y~~L~~l 272 (428)
.-..|++-+.+++-
T Consensus 520 fDfhtyc~rk~tlrsY 535 (700)
T KOG1156|consen 520 FDFHTYCMRKGTLRSY 535 (700)
T ss_pred hhHHHHHHhcCcHHHH
Confidence 22344444555443
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.82 E-value=0.14 Score=42.79 Aligned_cols=96 Identities=13% Similarity=-0.007 Sum_probs=72.4
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..++..|++++|...++.+....+. + .+.+...+..+...|++.+|...++.+......
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---- 83 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-----N-------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD---- 83 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-----c-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----
Confidence 458889999999999999999988776321 1 345556678888999999999999988654321
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
....+...|.++...|++..|...|-.+.+..
T Consensus 84 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 84 --DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 12233445788889999999999998887643
No 115
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.77 E-value=1.5 Score=48.55 Aligned_cols=164 Identities=8% Similarity=0.013 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~ 135 (428)
.-..-+.+.+++|+++.+++.+.+.++.. +. +...+. .++..+.... +.+.....++.+. . ..-.+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~-~~~av~----dll~l~~~~G--~~~~A~~~~eka~---~---p~n~~ 101 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG-PL-QSGQVD----DWLQIAGWAG--RDQEVIDVYERYQ---S---SMNIS 101 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-cc-chhhHH----HHHHHHHHcC--CcHHHHHHHHHhc---c---CCCCC
Confidence 33444667788899999999888888765 43 211222 2222221111 1223334333332 1 11233
Q ss_pred HHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 014255 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (428)
Q Consensus 136 lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i 215 (428)
.....-+|.++...|+|++|.++++++...-++ + .+++...+.++...++..+|...+.++.+..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-----n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--- 166 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT-----N-------PDLISGMIMTQADAGRGGVVLKQATELAERD--- 166 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---
Confidence 344446688999999999999999999888432 1 1233344778888899999988887765432
Q ss_pred CChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 216 ~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
|.... ....+-++...+++.+|...|-+.++..
T Consensus 167 --p~~~~--~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 167 --PTVQN--YMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred --cchHH--HHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 22111 1111222223456656888888877643
No 116
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.76 E-value=1.1 Score=43.76 Aligned_cols=225 Identities=13% Similarity=0.122 Sum_probs=143.1
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh-------hhhhHHHHHHHHHHH
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-------VTRNYSEKCINNIMD 102 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-------~~k~~~~k~v~~il~ 102 (428)
.+++.||....+++++-.+ ....|+.+..+++...+.|.|++++.+--.-+..+... ..+-.+++.-+.+-+
T Consensus 20 ~~~~~al~~w~~~L~~l~~-~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSD-LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999876533 33468999999999999999998886543333322111 122233333333322
Q ss_pred H---------hcCCCCC--------------ChhHHHHHHHHHHHHHHHh------hhhh-HHHHHhHHHHHHHHhhccH
Q 014255 103 F---------VSGSASQ--------------NFSLLREFYQTTLKALEEA------KNER-LWFKTNLKLCKIWFDMGEY 152 (428)
Q Consensus 103 ~---------~~~~~~~--------------~~~~~~~~~~~~le~l~~~------~~~k-l~lr~~~~La~l~~~~g~~ 152 (428)
+ ....|+. +...-.-.++.+++.++.+ +.++ +=+++..-|+.++-...||
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 2 1113331 1122234667777777753 2333 4448888999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhH
Q 014255 153 GRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMH 232 (428)
Q Consensus 153 ~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~ 232 (428)
++|+-+..+....+... +.+|-. ..+..-.....+-.+..+|....|+++-+.|.++.-...+.-+++.--.+.|.+|
T Consensus 179 ~Kal~f~~kA~~lv~s~-~l~d~~-~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSY-GLKDWS-LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hHHhhhhHhHHHHHHhc-CcCchh-HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99998887777665432 222310 1222222233334455668888888899999887655555556776667889999
Q ss_pred HhhhcHHHHHHHHHHHHHhhhhhcc
Q 014255 233 MAERQWADAATDFFEAFKNYDEAGN 257 (428)
Q Consensus 233 ~~~~~y~~A~~~f~ea~~~~~~~~~ 257 (428)
-..+|-+.|+..|-+++.+-...++
T Consensus 257 R~~gd~e~af~rYe~Am~~m~~~gd 281 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMGTMASLGD 281 (518)
T ss_pred HhcccHhHHHHHHHHHHHHHhhhhh
Confidence 9999999999888888776655554
No 117
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=1.3 Score=44.94 Aligned_cols=178 Identities=12% Similarity=0.100 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh----hHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR----NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k----~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~ 131 (428)
-+++++-+-.-.|++.++++-+..+.... ..-+. .+.+-.+.-++..++.+-+. .+..... +.++++....
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~-~r~p~~~Llr~~~~~ih~LlGlys~sv~~-~enAe~h---f~~a~k~t~~ 399 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWC-TRFPTPLLLRAHEAQIHMLLGLYSHSVNC-YENAEFH---FIEATKLTES 399 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCchHHHHHhHHHHHHHHhhHhhhcch-HHHHHHH---HHHHHHhhhH
Confidence 45666777778899999999888887765 32222 34555666667766642221 1122222 2223333334
Q ss_pred hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 132 ~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
..++.-++.+||-.|+..|+-+.--+++..+-..-+.+. .. -.+...++....-..+..+++.+||..+++..+.
T Consensus 400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~--ss---q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 400 IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSL--SS---QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcc--hH---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 457888888999999999876665555555544322111 11 1344566667777788999999999999999888
Q ss_pred hccCCChhhHHHHHHhhhHhHHhhhcHHHHHH
Q 014255 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAAT 243 (428)
Q Consensus 212 ~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~ 243 (428)
+|+..-.++.+..-..-|.+....||-.++..
T Consensus 475 anaed~~rL~a~~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 475 ANAEDLNRLTACSLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 87655566677665556666666666555443
No 118
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.71 E-value=0.42 Score=48.49 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=35.1
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i 215 (428)
.-+|.+++..|+|++|.+.++........+ + . +.+..-+.++...|+..+|..+++++.....++
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p----~----~---~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQL----D----A---NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCC----C----H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 356666666777777776666433322211 1 0 122233556666677777766666665544443
No 119
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.66 Score=44.89 Aligned_cols=90 Identities=7% Similarity=0.117 Sum_probs=68.6
Q ss_pred HHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC--ChhhHH
Q 014255 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--HPRIMG 222 (428)
Q Consensus 145 l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~--~p~~~~ 222 (428)
+..+.+|.++|.++++++...+... ++ +...+-+...++++++..||...++..++..++..+... +|.+.+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~---~e---~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY---KE---PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh---cc---chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 3445578899999999999887643 12 134567777888999999999999999999988777655 466888
Q ss_pred HHHHhhhHhHHhhhcHHH
Q 014255 223 IIRECGGKMHMAERQWAD 240 (428)
Q Consensus 223 ~i~~~~g~~~~~~~~y~~ 240 (428)
.++..+..+|-..+||..
T Consensus 158 ~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hHHHHHHHHHHHHHhHHH
Confidence 888887777765555544
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.67 E-value=0.45 Score=41.27 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=74.8
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..+.+.|++++|.++.+-+-.. | ..-.+.+..-.-++-.+|++.+|-..|..|..+.. .+|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--------D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp 103 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY--------D----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAP 103 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------C----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCc
Confidence 357888999999999999988888777 2 22356666777788899999999999999876653 234
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
+- ....|..++.-|+...|.+.|..+....
T Consensus 104 ~~----~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 QA----PWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred hH----HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 32 2345788888999999999999997755
No 121
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=95.55 E-value=0.025 Score=50.45 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=42.2
Q ss_pred HHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 344 ~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
..+..+++.-..|.+.+||..||++.+++-.-|-.|..+|.|.|.||-....|+++..
T Consensus 102 ~~Fi~yIK~~Kvv~ledla~~f~l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~e 159 (188)
T PF09756_consen 102 QEFINYIKEHKVVNLEDLAAEFGLRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEE 159 (188)
T ss_dssp HHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE----
T ss_pred HHHHHHHHHcceeeHHHHHHHcCCCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHH
Confidence 3456777888999999999999999999999999999999999999999999999864
No 122
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.52 E-value=0.16 Score=38.80 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=58.7
Q ss_pred hhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHh
Q 014255 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (428)
Q Consensus 148 ~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~ 227 (428)
+.|+|++|..++.++....+. + . .-.++...+..++..|++.+|-.++++ .+.. |.. ......
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~----~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~-~~~~~l 63 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----N----P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSN-PDIHYL 63 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----T----H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCH-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----C----h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCC-HHHHHH
Confidence 468999999999999988542 1 1 234555678899999999999988876 3222 111 222234
Q ss_pred hhHhHHhhhcHHHHHHHHHHH
Q 014255 228 GGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 228 ~g~~~~~~~~y~~A~~~f~ea 248 (428)
-|..+...++|.+|...|-++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 489999999999999988653
No 123
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.51 E-value=0.029 Score=41.06 Aligned_cols=51 Identities=24% Similarity=0.476 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTY 83 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~-~~~~l~e~~~~l~~~ 83 (428)
.+++++|+..|.+.++.++++ ..++..++.+|...| +++++++.+++.++.
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~----~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNN----AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTH----HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 457999999999999998754 568999999999999 799999999998875
No 124
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.44 E-value=0.12 Score=37.64 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=48.8
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAI 211 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~-d~~ka~~~l~~a~~~ 211 (428)
...+|..+...|+|++|...+.+.....+ ....++...+.++..+| ++.+|...++++.++
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDP------------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHST------------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45788899999999999999998888732 13567778888888988 689999888888654
No 125
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.33 E-value=0.034 Score=41.27 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=38.5
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~ 393 (428)
.|+.+++--.++++..||..|++|++.||.+|..++..|+|.-.-+...
T Consensus 4 ~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 4 EIRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred HHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 4567777788999999999999999999999999999999985544443
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.32 E-value=0.47 Score=40.55 Aligned_cols=92 Identities=15% Similarity=0.020 Sum_probs=72.3
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~ 220 (428)
.+|..+...|++++|...+..+...-. ...+.+...+.++...|++.+|...|.++......- +
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P------------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~--~-- 92 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP------------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH--P-- 92 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC------------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--c--
Confidence 578899999999999999998876632 135677778889999999999999999997654321 2
Q ss_pred HHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 221 MGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
......|..+...|++.+|...|..+..
T Consensus 93 --~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 93 --EPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233347788889999999999999865
No 127
>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.19 E-value=0.052 Score=48.76 Aligned_cols=121 Identities=12% Similarity=0.161 Sum_probs=80.1
Q ss_pred CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCC-ChH
Q 014255 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEK 370 (428)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l-~~~ 370 (428)
.|...++..++..|..|++..+..--... +.|..+.. .+++...+..+...-+.+...-+-..+.+ ++-
T Consensus 56 e~~dsa~lrlL~lFa~Gt~~Dy~aea~rl-p~Ls~~q~---------~kLk~ltV~slas~~k~lpy~~Ll~~l~~~nvr 125 (258)
T KOG3250|consen 56 EPIDSAYLRLLELFAYGTYRDYSAEALRL-PKLSLAQL---------NKLKHLTVVSLASFEKCLPYLVLLRLLPSRNVR 125 (258)
T ss_pred ccccHHHHHHHHHHhcCchhhhhhhhhcC-CCCCHHHH---------HhhhcceehhhhhhchhhhHHHHHhhccCCchh
Confidence 35556777888999999988765321111 11211111 11222222222233345555556666666 578
Q ss_pred HHHHHHHHHHHcCceeEEEecCCCEEEEcc-------CCccchHHHHHHHHHHHHHHHH
Q 014255 371 DVEQLLVSLILDNRIDGHIDQVNRLLERGD-------RSKGMKKYTAIDKWNSQLRKKR 422 (428)
Q Consensus 371 ~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~-------~~~~~~~~~~l~~w~~~v~~l~ 422 (428)
++|.+|++++-.+-+.|+|||.++++++.+ +.+.++|.--|.+|++.-..++
T Consensus 126 elEd~iieamya~IlrGkldqr~q~leV~faigRdlr~k~i~nm~~TL~~w~~~cenvL 184 (258)
T KOG3250|consen 126 ELEDLIIEAMYADILRGKLDQRNQTLEVDFAIGRDLRSKDIDNMKYTLDEWCEGCENVL 184 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHhhcceEeechhhcccccHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999984 5567788888999998776554
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.15 E-value=0.2 Score=49.91 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=71.7
Q ss_pred ccCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Q 014255 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (428)
Q Consensus 26 ~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (428)
.+.++++++|++.|.+.+..++++ ..++..++.+|...|++++++..+...+..-
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------------------- 66 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELD--------------------- 66 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence 345678999999999999988754 5677889999999999999999988877653
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 106 ~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
|+ .. ...+++|.+++..|+|++|...+++....-.
T Consensus 67 --P~-~~------------------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 67 --PS-LA------------------------KAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred --cC-CH------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 22 00 1134788899999999999999999988743
No 129
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.15 E-value=2.1 Score=39.38 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
.++..+++-=|.++|++..+..-+++-+..- ++.+.+-.++..+=.-. . ..+...+.|..++.. .. +++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~D----Ps~~~a~~~~A~~Yq~~--G--e~~~A~e~YrkAlsl-~p-~~G- 103 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHD----PSYYLAHLVRAHYYQKL--G--ENDLADESYRKALSL-AP-NNG- 103 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHc--C--ChhhHHHHHHHHHhc-CC-Ccc-
Confidence 4555566666666666666666666655543 22223323222221111 1 133455556655442 11 122
Q ss_pred HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014255 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 134 l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (428)
.|..+.|.+++..|.|++|...+..-.....= +. .-..+....-..++.|+...|+.++.++.....
T Consensus 104 ---dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y--~~--------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 104 ---DVLNNYGAFLCAQGRPEEAMQQFERALADPAY--GE--------PSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred ---chhhhhhHHHHhCCChHHHHHHHHHHHhCCCC--CC--------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 23557788888888888887666555443211 10 111222223344567888888888888765543
Q ss_pred cCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 214 ~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
..+.+. ......+...|+|-.|..+|-.--.+
T Consensus 171 ~~~~~~------l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 171 QFPPAL------LELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred CCChHH------HHHHHHHHhcccchHHHHHHHHHHhc
Confidence 332221 11245566777777777777655433
No 130
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=2.7 Score=38.85 Aligned_cols=202 Identities=12% Similarity=0.127 Sum_probs=103.7
Q ss_pred eeeecccchhhHHHHHHhhcccCC-CCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014255 6 FFLFSDEFTVSRVLCSILEKGLVE-TDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT 82 (428)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ak~~~~-~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (428)
.|-+|++.+-+...+.-.|...+- .+.+.|-..|.+.-+..- .+.......+....+.|.+ ++.+++.+.++.-+.
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIE 101 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHH
Confidence 344556555443333222222222 234556666655543211 1111123344444444333 366666655555555
Q ss_pred HHhhhhhh-hHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHH--HHhHHHHHHHHhhccHHHHHHHH
Q 014255 83 YIKSAVTR-NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF--KTNLKLCKIWFDMGEYGRMSKIL 159 (428)
Q Consensus 83 ~~~~~~~k-~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~l--r~~~~La~l~~~~g~~~~A~~~l 159 (428)
++ ..+++ ...++--..|.+.++.-+ .+.+.....|+.+-+..+. ++..-. ++.++.|.+--..|+|.+|.+++
T Consensus 102 Iy-t~~Grf~~aAk~~~~iaEiyEsdl-~d~ekaI~~YE~Aae~yk~--ees~ssANKC~lKvA~yaa~leqY~~Ai~iy 177 (288)
T KOG1586|consen 102 IY-TDMGRFTMAAKHHIEIAEIYESDL-QDFEKAIAHYEQAAEYYKG--EESVSSANKCLLKVAQYAAQLEQYSKAIDIY 177 (288)
T ss_pred HH-HhhhHHHHHHhhhhhHHHHHhhhH-HHHHHHHHHHHHHHHHHcc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 22211 112222223444444311 1256667777777666543 222222 77889999999999999999999
Q ss_pred HHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhhhccCCCh
Q 014255 160 KELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 160 ~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~-~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
+++-...- +..-...-+.=|+..+-+|+-. .|..-++..+.+-....++..+.
T Consensus 178 eqva~~s~------~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 178 EQVARSSL------DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhc------cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 99987643 2110122244556666666544 77777777777665554444443
No 131
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.12 E-value=2.7 Score=42.45 Aligned_cols=161 Identities=9% Similarity=0.050 Sum_probs=82.2
Q ss_pred cCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC
Q 014255 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (428)
...++++.|.+.|.+..+.+++.. + ...+ ..+.++...|+++++.+.++.+.+.. |..+ ...+-+...+..
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~-~-~~~l-~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~-----~al~ll~~~~~~ 199 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQ-L-PVEI-TRVRIQLARNENHAARHGVDKLLEVA-PRHP-----EVLRLAEQAYIR 199 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcch-H-HHHH-HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH-----HHHHHHHHHHHH
Confidence 556778888888888876655431 1 1111 23788888888888888888887765 4322 112222222221
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhh--hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHH
Q 014255 107 SASQNFSLLREFYQTTLKALEEAKNE--RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (428)
Q Consensus 107 ~~~~~~~~~~~~~~~~le~l~~~~~~--kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (428)
..+ .+...+.++...+...-...+ ++.......+........+-+...++++.+.+... ...++
T Consensus 200 ~gd--w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~------------~~~~~ 265 (398)
T PRK10747 200 TGA--WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR------------HQVAL 265 (398)
T ss_pred HHh--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh------------CCHHH
Confidence 111 333333333332211000010 01111111222222222233334444444433321 12456
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
+..-++.+...|+..+|...+.++.+
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67777899999999999999988865
No 132
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.97 E-value=0.74 Score=40.24 Aligned_cols=130 Identities=8% Similarity=-0.030 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
+.++..+-+.+..+++..+.+ -...++..++.++...|+++++...+...+... +. +
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~--------------------~ 68 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGE--KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-ID--------------------P 68 (168)
T ss_pred ccccccchhhhhHhccCCchh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cc--------------------c
Confidence 445677778887776654322 247788899999999999999999988877653 10 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
. .. ..+...+|.++...|++++|...+......-+.. .+. -..+..++...
T Consensus 69 ~-~~-----------------------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~--~~~la~i~~~~ 119 (168)
T CHL00033 69 Y-DR-----------------------SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL---PQA--LNNMAVICHYR 119 (168)
T ss_pred h-hh-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHH--HHHHHHHHHHh
Confidence 0 00 0123478999999999999999998888663221 110 12233444445
Q ss_pred HHHHHhhcCHHHHHHHHHHHHh
Q 014255 189 IQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
.+.+...|++..|...+.++..
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred hHHHHHcccHHHHHHHHHHHHH
Confidence 5555688888877777766643
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=2.1 Score=39.98 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~ 111 (428)
.+-|-..+..+-..-|. ..|..+--+.++-..|+|+++.++|.+++..- |.-.-.+. +.+.-.-. .+.+
T Consensus 68 ~~lAq~C~~~L~~~fp~----S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K----RKlAilka--~GK~ 136 (289)
T KOG3060|consen 68 DDLAQKCINQLRDRFPG----SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK----RKLAILKA--QGKN 136 (289)
T ss_pred hHHHHHHHHHHHHhCCC----ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHH----HHHHHHHH--cCCc
Confidence 55666666665433332 24555556778888999999999999999875 43222222 22222211 2333
Q ss_pred hhHHHHHHHHHHHHHHH-hhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHH
Q 014255 112 FSLLREFYQTTLKALEE-AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (428)
Q Consensus 112 ~~~~~~~~~~~le~l~~-~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~ 190 (428)
.+...++.+- ++. .++--.| ..|+.+|+..|+|.+|.=.++++.-..+. ....---+.+..
T Consensus 137 l~aIk~ln~Y----L~~F~~D~EAW----~eLaeiY~~~~~f~kA~fClEE~ll~~P~----------n~l~f~rlae~~ 198 (289)
T KOG3060|consen 137 LEAIKELNEY----LDKFMNDQEAW----HELAEIYLSEGDFEKAAFCLEELLLIQPF----------NPLYFQRLAEVL 198 (289)
T ss_pred HHHHHHHHHH----HHHhcCcHHHH----HHHHHHHHhHhHHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHH
Confidence 3222222222 221 1222233 37899999999999999999998765332 122222223333
Q ss_pred HHH-hhcCHHHHHHHHHHHHhhhc
Q 014255 191 MYT-ETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 191 l~~-~~~d~~ka~~~l~~a~~~~~ 213 (428)
++. ...|+.-++.+|.+|.++..
T Consensus 199 Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 199 YTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCh
Confidence 332 23478889999999987643
No 134
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.90 E-value=5.1 Score=44.39 Aligned_cols=201 Identities=9% Similarity=0.032 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhhc---CCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 32 PEGALAGFAEVVA---MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 32 ~~~Ai~~~~~ii~---~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+.|+..+..++. ..|+......++...-+-.+...|++.++++.|+.+...- .-.+.++...+-...-... .|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~--~~~P~y~~~a~adayl~~~-~P 343 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG--YKMPDYARRWAASAYIDRR-LP 343 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC--CCCCHHHHHHHHHHHHhcC-Cc
Confidence 3678888888887 3343323335566666778888999999999999997642 2235665555533332222 23
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhh-hH--HHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccC-C--CCCcchhhhhhHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNE-RL--WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR-E--DGTDDQKKGSQLL 182 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~-kl--~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~-~--~~~~d~~~~~~~~ 182 (428)
. ....+|..+.. ...+. .. -+-....|.--|++.|+|++|..++.++....+- . -|...+.....-.
T Consensus 344 ~----kA~~l~~~~~~---~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 344 E----KAAPILSSLYY---SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred H----HHHHHHHHHhh---ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 3 34455554422 11100 01 1111246777788999999999999999984331 0 0100111123456
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 183 e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
+.....+.++...||+++|.+.+++......+ ++ .+....+.++...+.+.+|...+-.+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~--n~----~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA--NQ----NLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888889999999999999999887554322 23 23445577888899999999988554
No 135
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=2.4 Score=43.11 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=65.2
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCC-cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~-~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i 215 (428)
.+..-.|.++.+++++++|.+.+.....+-....+. .. ..-++.--+...+ -.+|+..|..++++|..+
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~---~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~---- 532 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN---AAPLVHKALLVLQ---WKEDINQAENLLRKAIEL---- 532 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc---chhhhhhhHhhhc---hhhhHHHHHHHHHHHHcc----
Confidence 455578999999999999999888777664432110 01 1112222222222 348999999999998754
Q ss_pred CChh-hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 216 PHPR-IMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 216 ~~p~-~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
||+ -++ +...|.+.+.+++-.+|...|-++..
T Consensus 533 -Dpkce~A--~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 533 -DPKCEQA--YETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -CchHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443 233 23346777788899999999988843
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.84 E-value=0.29 Score=36.31 Aligned_cols=85 Identities=21% Similarity=0.417 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|+.+++..+.. ..+...++.++...|+++++.+++...+... |
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----------------------~ 65 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKALELD-----------------------P 65 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------------C
Confidence 356788888888887776543 2566777888888888888887776665532 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
. .. .....+|.++...|++++|.+.+..+...
T Consensus 66 ~--~~-----------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 D--NA-----------------------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred c--ch-----------------------hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 1 00 12346778888888999888888777654
No 137
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.78 E-value=0.14 Score=43.54 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=59.4
Q ss_pred hhHHHHHHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 014255 15 VSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (428)
Q Consensus 15 ~~~~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~ 87 (428)
.+....|-.|+.. .++++++|++.|+.+...-| -+++..++--.|+..|++.|++++++..++.|+++. |.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~ 79 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PT 79 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 4566777777754 55679999999999977665 356778899999999999999999999999999987 65
No 138
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.70 E-value=0.46 Score=40.61 Aligned_cols=110 Identities=12% Similarity=0.094 Sum_probs=57.7
Q ss_pred HHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHH
Q 014255 37 AGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLR 116 (428)
Q Consensus 37 ~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~ 116 (428)
..|...++.+|+. ....+..+.+.|+++++.++|...+..- +...... ..+...+.... +.+...
T Consensus 14 ~~~~~al~~~p~~-------~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~-----~~lg~~~~~~g--~~~~A~ 78 (144)
T PRK15359 14 DILKQLLSVDPET-------VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAH-----IALAGTWMMLK--EYTTAI 78 (144)
T ss_pred HHHHHHHHcCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH-----HHHHHHHHHHh--hHHHHH
Confidence 3455555555431 2235666666677777776666666543 3221111 11111111000 122333
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 117 EFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 117 ~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
..|+.+++. .. .+ ......+|..+...|++++|.+.+.......+
T Consensus 79 ~~y~~Al~l-~p-~~----~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 79 NFYGHALML-DA-SH----PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHhc-CC-CC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444444331 11 01 12345889999999999999999999988765
No 139
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.70 E-value=4 Score=43.09 Aligned_cols=189 Identities=13% Similarity=0.107 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+|..+|...+..+++..+.. ...--..+++.+....++.+..++.+-+..- + +.--.-|.+ .++.+.+
T Consensus 597 agdv~~ar~il~~af~~~pns----eeiwlaavKle~en~e~eraR~llakar~~s-g--TeRv~mKs~--~~er~ld-- 665 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNS----EEIWLAAVKLEFENDELERARDLLAKARSIS-G--TERVWMKSA--NLERYLD-- 665 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCc----HHHHHHHHHHhhccccHHHHHHHHHHHhccC-C--cchhhHHHh--HHHHHhh--
Confidence 356778888888887776532 1222345678888888888887776665531 1 111111111 2233321
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+....+++.|++.. -.|.++.+.+|+++.+.++.+.|.+.+..-.+.|+.. +-+.+..
T Consensus 666 --~~eeA~rllEe~lk~f------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~------------ipLWllL 725 (913)
T KOG0495|consen 666 --NVEEALRLLEEALKSF------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS------------IPLWLLL 725 (913)
T ss_pred --hHHHHHHHHHHHHHhC------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC------------chHHHHH
Confidence 1333444444444321 2455778899999999999999998888877887642 2345566
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
+++--+.|+..+|+..+++++.-+ |. .+.++.-+..+....|+-..|....-.++..+..
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-----Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-----PK-NALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-----CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 788888889999999999986322 21 1234444455555667777777777777665533
No 140
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.69 E-value=6.8 Score=41.27 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=66.5
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~ 220 (428)
.+|.-+...|+|..|.+++++..+.+..++...+ ....+..+.+.++..+.|-..+|.+-+..-. |.+
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~----~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e--------~~i 215 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED----YEHSELLLYQNQILIEAGSLQKALEHLLDNE--------KQI 215 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH----HHHHHHHHHHHHHHHHcccHHHHHHHHHhhh--------hHH
Confidence 4555667789999999999999998853322222 4457788888888888888777665554321 122
Q ss_pred HH--HHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 221 MG--IIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 221 ~~--~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
.. .+.+..|.+.+..+++++|...+.--..
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 21 2345567788888899999877766543
No 141
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.67 E-value=1.5 Score=46.91 Aligned_cols=138 Identities=13% Similarity=0.155 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhh-hhh----HHHHHhHHHHHHHH-hhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 115 LREFYQTTLKALEEAK-NER----LWFKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 115 ~~~~~~~~le~l~~~~-~~k----l~lr~~~~La~l~~-~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
--+++.+++.|++.+. +.+ .=+++.++||.+++ ++.+++.|...|++-...+.. ++-. .++.......
T Consensus 33 Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~-----d~k~~~~~ll 106 (608)
T PF10345_consen 33 YYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLT-----DLKFRCQFLL 106 (608)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchH-----HHHHHHHHHH
Confidence 3445555555555432 222 23378889999988 779999999999999888876 2222 3455666666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 259 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~ 259 (428)
++++...+... |...++++........+....-.++.....+++..+|+..|.+.+-.........+++.
T Consensus 107 ~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 107 ARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 89998888777 88888887555444333222223334434444444899999999988876555556553
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.58 E-value=0.37 Score=47.96 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=72.5
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~ 220 (428)
..|.-.+..|+|.+|.+.+.+....... ....+...+.++..+|++..|...++++..+...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------ 68 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN------------NAELYADRAQANIKLGNFTEAVADANKAIELDPS------ 68 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------
Confidence 5577888899999999999999887331 1356677788899999999999999998765321
Q ss_pred HHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 221 MGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
.+..+...|.++...|+|..|...|..+...
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 1223444588899999999999999998753
No 143
>PLN03077 Protein ECB2; Provisional
Probab=94.55 E-value=1.8 Score=48.26 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (428)
++.++|.+.|.+. .++ ..++..++..|.+.|+.++++++++++... + +.+.. .....++..+.....
T Consensus 538 G~~~~A~~~f~~~---~~d-----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g-~~Pd~--~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 538 GRMNYAWNQFNSH---EKD-----VVSWNILLTGYVAHGKGSMAVELFNRMVES--G-VNPDE--VTFISLLCACSRSGM 604 (857)
T ss_pred CCHHHHHHHHHhc---CCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--C-CCCCc--ccHHHHHHHHhhcCh
Confidence 4456666666554 111 234455666677777777777777666542 1 22221 123344554443111
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHH
Q 014255 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKEL 162 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el 162 (428)
.+...++++...+.-.- .--..+..-++..+...|++++|.++++++
T Consensus 605 --v~ea~~~f~~M~~~~gi----~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 605 --VTQGLEYFHSMEEKYSI----TPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred --HHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 22222222222110000 001123345666777777777777777665
No 144
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.48 E-value=0.16 Score=37.52 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
..+++++|++.++.++..+|++ .......+.++++.|+++++.+.+...++.-
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4578999999999999998864 5666788999999999999999999998865
No 145
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.46 E-value=1.5 Score=44.46 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=38.0
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHH
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 205 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l 205 (428)
.+|..|+..|++++|..+|......-++ | . ..+-..++.|-.+||..++...+
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~-----d----p---~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPE-----D----P---NGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCC-----C----c---hHHHHHHHHHHHhCchHHHHHHH
Confidence 8899999999999999888888776432 2 1 23333456788888887776554
No 146
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.42 E-value=4.6 Score=38.24 Aligned_cols=46 Identities=17% Similarity=0.435 Sum_probs=33.7
Q ss_pred CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHH
Q 014255 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDL 337 (428)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l 337 (428)
.|.+..+.-|+.+...++...|....+.|++.+..||.+...++.+
T Consensus 189 ~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~I 234 (260)
T PF04190_consen 189 YPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKI 234 (260)
T ss_dssp -HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 4666777888899999999999999999999999998876655444
No 147
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.41 E-value=1.2 Score=39.68 Aligned_cols=111 Identities=11% Similarity=0.124 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh
Q 014255 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (428)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~ 130 (428)
+....++..++..|.+.|+.+.+++.|...+.+- .+....-.+.-.++...-...+ ...+...++.+...++...
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d--~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGD--WSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhccc
Confidence 4567899999999999999999999999988874 3444455555555554222223 6677888888877766533
Q ss_pred hhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 131 ~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
+-...-|+..--|-.++..|+|.+|.+.+-+.....
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 222222333344555667899999998877775444
No 148
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=7.5 Score=40.54 Aligned_cols=152 Identities=14% Similarity=0.258 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (428)
+.+++|++.+... +.. + -+.+.-=++++++.|+|++++..|+.+.+-. .+-.-+...-+++......+.
T Consensus 93 nk~Dealk~~~~~-~~~--~----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~----~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 93 NKLDEALKTLKGL-DRL--D----DKLLELRAQVLYRLERYDEALDIYQHLAKNN----SDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred ccHHHHHHHHhcc-ccc--c----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHhhhH
Confidence 4467777776622 221 1 2344445789999999999999999997642 233333333344433322111
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCC----CCCcchhhhhhHHHHH
Q 014255 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE----DGTDDQKKGSQLLEVY 185 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~----~~~~d~~~~~~~~e~~ 185 (428)
. +. +.+..+.+ --....++.|-++...|+|.+|.++|......|... +..+| ....|+-
T Consensus 162 ------~-~~----q~v~~v~e--~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eE----eie~el~ 224 (652)
T KOG2376|consen 162 ------Q-LL----QSVPEVPE--DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEE----EIEEELN 224 (652)
T ss_pred ------H-HH----HhccCCCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchh----hHHHHHH
Confidence 0 01 11000110 011234578889999999999999999995544332 11111 1122222
Q ss_pred ---HHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 186 ---AIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 186 ---l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
+..+-++...|+..+|...|....
T Consensus 225 ~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 225 PIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 222234567799999999887654
No 149
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.23 E-value=0.13 Score=32.67 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
++.+|+.+|.+.|+|++++++|++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999987654
No 150
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.15 E-value=2.7 Score=45.59 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~ 111 (428)
+.+++..++..+...+.+ ..++..|+.+..+.|+++++.+++..++.+. |....+...-. .++.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~----~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a--~~L~~~~~----- 135 (694)
T PRK15179 68 PAAALPELLDYVRRYPHT----ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILML--RGVKRQQG----- 135 (694)
T ss_pred hHhhHHHHHHHHHhcccc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHH--HHHHHhcc-----
Confidence 455555555554444332 6788899999999999999999999999987 65332222111 11111111
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHH
Q 014255 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (428)
Q Consensus 112 ~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l 191 (428)
.+-....++.. ++...+.. .....+|..+.+.|+|++|..+++++... .+ ++ -+.++.-+..
T Consensus 136 ~eeA~~~~~~~---l~~~p~~~---~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p---~~-------~~~~~~~a~~ 197 (694)
T PRK15179 136 IEAGRAEIELY---FSGGSSSA---REILLEAKSWDEIGQSEQADACFERLSRQ--HP---EF-------ENGYVGWAQS 197 (694)
T ss_pred HHHHHHHHHHH---hhcCCCCH---HHHHHHHHHHHHhcchHHHHHHHHHHHhc--CC---Cc-------HHHHHHHHHH
Confidence 11112222221 21111211 23457888899999999999999998873 21 22 2445555677
Q ss_pred HHhhcCHHHHHHHHHHHHhhh
Q 014255 192 YTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 192 ~~~~~d~~ka~~~l~~a~~~~ 212 (428)
+...|+...|...|++|....
T Consensus 198 l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 198 LTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHcCCHHHHHHHHHHHHHhh
Confidence 778899999999998886543
No 151
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.89 E-value=3.2 Score=46.04 Aligned_cols=125 Identities=8% Similarity=0.089 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (428)
++.++|++.++++++.++++ .-++++++-.|... +.+++.+++.+.+..+ +.+....++...--..+...|+
T Consensus 130 g~~~ka~~~yer~L~~D~~n----~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDN----PEIVKKLATSYEEE-DKEKAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred CChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcc
Confidence 45778888888888877654 56788888888888 8888888887776654 3222333333222233332232
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
+.+ .++.. ++.+..........-+...|-.-|.+.++|+++.++|+.+...-+
T Consensus 202 -d~d---~f~~i-~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 202 -DFD---FFLRI-ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred -cch---HHHHH-HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 222 22222 222222211112223344566777888999999999999998843
No 152
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=93.79 E-value=3.6 Score=43.41 Aligned_cols=192 Identities=20% Similarity=0.233 Sum_probs=118.1
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+.++.|-++|.+.-...+ +.+..-.-+.+..-+++.++++.++...++.+ +...|-... .-+|.+.+
T Consensus 631 n~e~eraR~llakar~~sg-----TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lm--lGQi~e~~---- 698 (913)
T KOG0495|consen 631 NDELERARDLLAKARSISG-----TERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLM--LGQIEEQM---- 698 (913)
T ss_pred cccHHHHHHHHHHHhccCC-----cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHH--HhHHHHHH----
Confidence 3458888888888754432 24666667778888888899988888888887 665554332 11222222
Q ss_pred CCChhHHHHHHHHHHHHH----HHhhhhh-HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHH
Q 014255 109 SQNFSLLREFYQTTLKAL----EEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l----~~~~~~k-l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (428)
+.++.+++.- +.+.+.- +| +-|+++-+..|+...|..+|..-+..-++ -..
T Consensus 699 --------~~ie~aR~aY~~G~k~cP~~ipLW----llLakleEk~~~~~rAR~ildrarlkNPk------------~~~ 754 (913)
T KOG0495|consen 699 --------ENIEMAREAYLQGTKKCPNSIPLW----LLLAKLEEKDGQLVRARSILDRARLKNPK------------NAL 754 (913)
T ss_pred --------HHHHHHHHHHHhccccCCCCchHH----HHHHHHHHHhcchhhHHHHHHHHHhcCCC------------cch
Confidence 2233333321 1122211 33 35677888888888888888887766221 135
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh-hhcc-C---------CChh----hHHHHH---------HhhhHhHHhhhcHH
Q 014255 184 VYAIEIQMYTETKNNKKLKQLYQKALA-IKSA-I---------PHPR----IMGIIR---------ECGGKMHMAERQWA 239 (428)
Q Consensus 184 ~~l~e~~l~~~~~d~~ka~~~l~~a~~-~~~~-i---------~~p~----~~~~i~---------~~~g~~~~~~~~y~ 239 (428)
+++..+++-++.|+...|+..+.+|.. ..++ + ++|. .+..++ ..-|.++..+++|.
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 677778888888999888888877742 1111 1 0111 111222 22367788899999
Q ss_pred HHHHHHHHHHHhhhhhc
Q 014255 240 DAATDFFEAFKNYDEAG 256 (428)
Q Consensus 240 ~A~~~f~ea~~~~~~~~ 256 (428)
+|.+-|.-+...-...|
T Consensus 835 kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 835 KAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHHHHHHccCCccc
Confidence 99999998876443334
No 153
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=5 Score=41.25 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=66.6
Q ss_pred HHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHH
Q 014255 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (428)
Q Consensus 143 a~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~ 222 (428)
|.-++..|||.+|.+.|.+.-+.-+ +| ...|..-+-.|.++++++.|-.-..++... .++.+.+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P-----~D-------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL----~p~~~kg 428 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDP-----ED-------ARLYSNRAACYLKLGEYPEALKDAKKCIEL----DPNFIKA 428 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCC-----ch-------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CchHHHH
Confidence 7788899999999999999666532 23 245666667788999999876655544432 2344566
Q ss_pred HHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 223 IIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 223 ~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
.++. |.++...++|..|...|.++.+
T Consensus 429 y~RK--g~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 429 YLRK--GAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 6665 8888889999999999999865
No 154
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=6.2 Score=40.27 Aligned_cols=152 Identities=10% Similarity=0.059 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh----hhhhHHHHHhHHHHHHHH-hhccHHHHHHHHHHHHhhc
Q 014255 92 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA----KNERLWFKTNLKLCKIWF-DMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 92 ~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~----~~~kl~lr~~~~La~l~~-~~g~~~~A~~~l~el~~~~ 166 (428)
++++.+-.+.+.+.+..- --+.+|..|++.. ...++=.|+.++||.+++ -..+.+-|...|+..-...
T Consensus 5 Ava~aLlGlAe~~rt~~P-------PkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~ 77 (629)
T KOG2300|consen 5 AVAEALLGLAEHFRTSGP-------PKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLIS 77 (629)
T ss_pred HHHHHHHHHHHHHhhcCC-------hhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 444555555555554211 1244555555542 123344488899999876 4578888999888888776
Q ss_pred cCCCCCcchhhhhhHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHH
Q 014255 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDF 245 (428)
Q Consensus 167 ~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~-d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f 245 (428)
...|..- ..+.+-+...+.+|.... +++.+|+.+++|..+.... |-....+...-+.++..++||..|++.+
T Consensus 78 ~~ip~fy-----dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~--p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 78 KSIPSFY-----DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV--PYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred cccccHH-----hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 6554321 356777777888888777 8999999999998776554 4555666666778889999999999885
Q ss_pred HHHHHhhhhhcc
Q 014255 246 FEAFKNYDEAGN 257 (428)
Q Consensus 246 ~ea~~~~~~~~~ 257 (428)
--.++..++.+.
T Consensus 151 avga~sAd~~~~ 162 (629)
T KOG2300|consen 151 AVGAESADHICF 162 (629)
T ss_pred hccccccchhhh
Confidence 544555444443
No 155
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=6.5 Score=36.71 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHHH
Q 014255 294 EILAMTNLIAAYQRNEIIEFEKILKS 319 (428)
Q Consensus 294 ~~~~l~~L~~af~~~dl~~f~~~l~~ 319 (428)
+...+..|+.+|..+|...+.+.+..
T Consensus 227 d~r~lenLL~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 227 DSRSLENLLTAYDEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHcC
Confidence 45567788888888888888876543
No 156
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=6 Score=41.23 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHhcCCCCC
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSASQ 110 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~-k~~~~k~v~~il~~~~~~~~~ 110 (428)
+.+|++.+...-+..+++ .+-++--.+++.+.+|+|..|++.+..++..+.+.+. -...-.+|..++..+..+.+
T Consensus 357 ~~ka~e~L~~~~~~~p~~---s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~- 432 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEK---SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKD- 432 (652)
T ss_pred HhhhHHHHHHHhccCCch---hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccC-
Confidence 456777777665554443 2456666789999999999999999977755434332 23344566666666655444
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHhH-HHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 111 NFSLLREFYQTTLKALEEAKNERLWFKTNL-KLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~~~kl~lr~~~-~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
......++..+..+.+....++.-+++.+ .+|.|.+..|+-++|..+|+++.+...
T Consensus 433 -~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 433 -NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred -CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 33456666666555554433444444444 788999999999999999999999754
No 157
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.36 E-value=3 Score=40.66 Aligned_cols=173 Identities=13% Similarity=0.057 Sum_probs=102.9
Q ss_pred HHHHHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHH-HHHH-----------------------------HHHHHHH
Q 014255 18 VLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFK-ALKQ-----------------------------TVKLYYR 66 (428)
Q Consensus 18 ~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k-~l~~-----------------------------l~~l~~~ 66 (428)
..-+.-++.+ ....+..|+..|+..|+.+|++-...|| +... =+.++.+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 3344445544 3445889999999999888754222222 1111 1456678
Q ss_pred hCCHHHHHHHHHHHHHHHhhhh-------hhhHHH----HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 014255 67 LGKYKEMMDAYREMLTYIKSAV-------TRNYSE----KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (428)
Q Consensus 67 ~~~~~~l~e~~~~l~~~~~~~~-------~k~~~~----k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~ 135 (428)
+|.++.+..-+..++.-- +.. ++.... ..+.++...+.. .| -..+++++..++|..-|..
T Consensus 119 ~Gele~A~~DF~~vl~~~-~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~-GD--~~~ai~~i~~llEi~~Wda----- 189 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHE-PSNGLVLEAQSKLALIQEHWVLVQQLKSASGS-GD--CQNAIEMITHLLEIQPWDA----- 189 (504)
T ss_pred cccHHHHHHHHHHHHhcC-CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC-Cc--hhhHHHHHHHHHhcCcchh-----
Confidence 888888887777777653 321 111111 122233333322 22 3446666666666544421
Q ss_pred HHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 136 lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.+...-|+-|...|+...|..=+..+.+..++ ..|.+...+++++..||...+-..++.+.++.
T Consensus 190 -~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D------------nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 190 -SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD------------NTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred -HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc------------chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 22235567788888888888777777777542 24566677888888888888777778887664
No 158
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.22 E-value=0.9 Score=45.17 Aligned_cols=178 Identities=15% Similarity=0.088 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014255 32 PEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (428)
.+.|.+.|+.-++... .+....-+++.+++.-|+-.|+++.++..-+.-+.+-+..-.+++--..-.++.+...=.
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl-- 248 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL-- 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh--
Confidence 3567777777666433 233446789999999999999999999887766665423334444444444444322111
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHH
Q 014255 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~ 189 (428)
.+.+...+.|..++.......+...-....+-||+.|.-..++++|.++-+.=...-... .|. .--...+-...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL---~Dr---iGe~RacwSLg 322 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL---EDR---IGELRACWSLG 322 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHh---hhhHHHHHHHH
Confidence 236678888988887654444444445667789999999999999986655444332211 121 11122333344
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 190 QMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
..+..+|+..+|--+....+.++..+.+
T Consensus 323 na~~alg~h~kAl~fae~hl~~s~ev~D 350 (639)
T KOG1130|consen 323 NAFNALGEHRKALYFAELHLRSSLEVND 350 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 5677778888877666666554444443
No 159
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=2.4 Score=39.93 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=33.4
Q ss_pred HhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCC
Q 014255 230 KMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE 277 (428)
Q Consensus 230 ~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~ 277 (428)
..|+..++|.+|-..+.++.... +.....|..+++|+.+.|.+
T Consensus 215 v~~l~~~~~eeAe~lL~eaL~kd-----~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 215 VCHLQLGRYEEAESLLEEALDKD-----AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHhcCHHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHhCCC
Confidence 57788999999999999998754 23345688888998877654
No 160
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=93.00 E-value=2.2 Score=39.91 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=80.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhH
Q 014255 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (428)
Q Consensus 142 La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~ 221 (428)
+++..+..|+|.+|...+++....-++ | ++.+....-.|...|++..|+..|.++.++.. .+|.+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~-----d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--~~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPT-----D-------WEAWNLLGAALDQLGRFDEARRAYRQALELAP--NEPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCC-----C-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--CCchhh
Confidence 788889999999999999988777432 2 56666777788999999999999999987642 245544
Q ss_pred HHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhC
Q 014255 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (428)
Q Consensus 222 ~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~ 275 (428)
+-+ |..++..||+.+|..++..++... +.-..+..-+.++..+.+
T Consensus 172 nNl----gms~~L~gd~~~A~~lll~a~l~~-----~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 172 NNL----GMSLLLRGDLEDAETLLLPAYLSP-----AADSRVRQNLALVVGLQG 216 (257)
T ss_pred hhH----HHHHHHcCCHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHhhcC
Confidence 432 667778999999999999987643 112233445555554443
No 161
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.78 E-value=5.4 Score=33.72 Aligned_cols=122 Identities=14% Similarity=0.228 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
.|..+...+......|+.+...+.+...+...++.. +...++ ..+....++. -.
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~---------------l~~~~~------~~W~~~~r~~-----l~ 58 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDF---------------LPDLDD------EEWVEPERER-----LR 58 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SST---------------TGGGTT------STTHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCC---------------CCCCCc------cHHHHHHHHH-----HH
Confidence 455555556666666677777776666666552221 111111 0122222221 22
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
..++.+..+++..+...|++++|..++..+...-+ .-=+.+...++.+...|+...|...|...+...
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDP------------YDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 35667778999999999999999999999988832 123566777899999999999999999885543
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.74 E-value=2.6 Score=40.02 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=69.2
Q ss_pred HHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhhHHH
Q 014255 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGI 223 (428)
Q Consensus 145 l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~-p~~~~~ 223 (428)
+.+..|+|++|...++.+...-++. .+.-..+...+.+|+..|++..|...+....+. .++ |. ...
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~s---------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~---yP~s~~-~~d 218 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPDS---------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN---YPKSPK-AAD 218 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCcc-hhH
Confidence 3456799999999999998876532 233455566778999999999999998776432 222 22 222
Q ss_pred HHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 224 IRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 224 i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
.....|.++...+++..|...|-...+.|..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 2333477777899999999999999887743
No 163
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.71 E-value=0.7 Score=43.49 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=81.1
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 014255 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (428)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (428)
.|-.|-++ +.+|+.+|.+.|.+-|+..|.. ...-.+..=|++.++.+|+++.+.+.|-...+.+ +.-+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~K-------- 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSPK-------- 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCCC--------
Confidence 45566555 4557999999999999988743 3357888999999999999999999998887765 43111
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCC
Q 014255 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (428)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~ 169 (428)
.|+ ..++||....+.|+-++|...|+++-+.-++.
T Consensus 214 --------Apd----------------------------allKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 214 --------APD----------------------------ALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred --------ChH----------------------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 122 14589999999999999999999999987643
No 164
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=92.58 E-value=5.6 Score=38.36 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMM 74 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~ 74 (428)
-.++|..+|.... +-..++ +-......-+.+.+..+|+++..+
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~---~~~~e~~~~~~Rs~iAlg~~~~vl 55 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSP---ENKLERDFYQYRSYIALGQYDSVL 55 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTC---HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HhhhHHHHHHHhh-ccCCCc---hhHHHHHHHHHHHHHHcCChhHHH
Confidence 4567888887766 322222 213455556677778888877554
No 165
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.58 E-value=3.6 Score=39.87 Aligned_cols=160 Identities=10% Similarity=0.112 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-hcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHH
Q 014255 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF-VSGSASQNFSLLREFYQTTLKALEEAKNERLWFK 137 (428)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~-~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr 137 (428)
.++.++-..+++++++++|+..++.. +. +-.++ -.....+ +++ +.+....+|..++.. .+.+..+|..
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~-~~-nvEai---Acia~~yfY~~----~PE~AlryYRRiLqm--G~~speLf~N 363 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLH-PI-NVEAI---ACIAVGYFYDN----NPEMALRYYRRILQM--GAQSPELFCN 363 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcC-Cc-cceee---eeeeeccccCC----ChHHHHHHHHHHHHh--cCCChHHHhh
Confidence 34567777777888888887777764 32 21111 1111111 222 345666777776553 1234445543
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
+ -|+=+| .++|+-++..++......+.+ ....+++-....+....||+.-|+..++-|.+..+
T Consensus 364 i--gLCC~y--aqQ~D~~L~sf~RAlstat~~---------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~---- 426 (478)
T KOG1129|consen 364 I--GLCCLY--AQQIDLVLPSFQRALSTATQP---------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA---- 426 (478)
T ss_pred H--HHHHHh--hcchhhhHHHHHHHHhhccCc---------chhhhhhhccceeEEeccchHHHHHHHHHHhccCc----
Confidence 3 444444 366666666666666554432 23456666666777777888888777777654221
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
..-..+ .--|.+.+..|+...|.+++-.+
T Consensus 427 -~h~eal-nNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 427 -QHGEAL-NNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred -chHHHH-HhHHHHHhhcCchHHHHHHHHHh
Confidence 111111 11144555566666777776665
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.52 E-value=0.4 Score=34.66 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=41.4
Q ss_pred HHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 146 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 146 ~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
+++.|+|++|.++++++....++ -.++.+..+++|...|++.+|+..+.+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD------------NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ChhccCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35789999999999999888432 245666778899999999999999876643
No 167
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.26 E-value=3.2 Score=45.01 Aligned_cols=120 Identities=9% Similarity=-0.011 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+.+++|+..+..+++..|+. ..+....+.++.+.++++++++.+.+.+..- +.- +..--..-.++..+..
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~----~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~--~~~~~~~a~~l~~~g~-- 169 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDS----SEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSS--AREILLEAKSWDEIGQ-- 169 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCC--HHHHHHHHHHHHHhcc--
Confidence 456899999999999998875 5677889999999999999999999998864 421 1111122223333322
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
.+...+.|+.++. +...+.. ....+|..+...|+.++|...++..-...
T Consensus 170 ---~~~A~~~y~~~~~--~~p~~~~----~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 170 ---SEQADACFERLSR--QHPEFEN----GYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred ---hHHHHHHHHHHHh--cCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5566777777765 1111222 34588999999999999999999988775
No 168
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=15 Score=37.61 Aligned_cols=214 Identities=15% Similarity=0.189 Sum_probs=117.9
Q ss_pred HHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHH------------HHHHH
Q 014255 33 EGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS------------EKCIN 98 (428)
Q Consensus 33 ~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~------------~k~v~ 98 (428)
.++...+......+. +..+....++..-+..++-.|++-.+.+.+...++.. +..++.++ +++.+
T Consensus 303 te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~ 381 (606)
T KOG0547|consen 303 TEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWK 381 (606)
T ss_pred HHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHH
Confidence 444444444444443 2344455666666666666666666666666666655 43333211 11111
Q ss_pred HHHHHhc---CCCC-----CChhHHHHHHHHHHHHHHHh---hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 99 NIMDFVS---GSAS-----QNFSLLREFYQTTLKALEEA---KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 99 ~il~~~~---~~~~-----~~~~~~~~~~~~~le~l~~~---~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
-.-+..+ +.|+ ....++...|+.+..-.+.+ ..+-++- ...|+-..+..+.++++....++..+.++
T Consensus 382 ~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~--~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP 459 (606)
T KOG0547|consen 382 DFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA--YIQLCCALYRQHKIAESMKTFEEAKKKFP 459 (606)
T ss_pred HHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1111111 1122 12344555555555544443 1222222 33677778888899999999999999886
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC---C---ChhhHHHHHHhhhHhHHhhhcHHHH
Q 014255 168 REDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI---P---HPRIMGIIRECGGKMHMAERQWADA 241 (428)
Q Consensus 168 ~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i---~---~p~~~~~i~~~~g~~~~~~~~y~~A 241 (428)
+. .|++..-+++...++++.+|...|+.|..+-+.. . .|.+...+-... ..+|+..|
T Consensus 460 ~~------------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-----wk~d~~~a 522 (606)
T KOG0547|consen 460 NC------------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-----WKEDINQA 522 (606)
T ss_pred CC------------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-----hhhhHHHH
Confidence 42 4667777778889999999999999997554431 1 133332221211 23666777
Q ss_pred HHHHHHHHHhhhhhcchhHHHHHHHHHHHHHh
Q 014255 242 ATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 273 (428)
Q Consensus 242 ~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL 273 (428)
......+.+ .+|+.-. -|..|+.+.
T Consensus 523 ~~Ll~KA~e-----~Dpkce~--A~~tlaq~~ 547 (606)
T KOG0547|consen 523 ENLLRKAIE-----LDPKCEQ--AYETLAQFE 547 (606)
T ss_pred HHHHHHHHc-----cCchHHH--HHHHHHHHH
Confidence 766666643 2344333 366676663
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.20 E-value=0.63 Score=34.15 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 142 La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
|..+|...++|++|.+.++.+...-+. -...+...+.++...|++.+|...+..+.+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD------------DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc------------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467889999999999999999888432 23556667788999999999999998886543
No 170
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=92.19 E-value=1.6 Score=36.27 Aligned_cols=76 Identities=11% Similarity=0.186 Sum_probs=59.5
Q ss_pred hhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee-EEEe-cCCCEEEEccCCccchH----HHHHHHHHHHHHHHH
Q 014255 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID-GHID-QVNRLLERGDRSKGMKK----YTAIDKWNSQLRKKR 422 (428)
Q Consensus 349 ~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~-g~ID-q~~g~v~~~~~~~~~~~----~~~l~~w~~~v~~l~ 422 (428)
++++-.-.+..+||+.++.+..-|.+-|-+++.-|.+. -+.. ...|..+++.+-+.+.+ ...+++|+.++.++.
T Consensus 36 LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~~~~~Ggy~yiY~~i~~ee~k~~i~~~l~~w~~~~~~~i 115 (126)
T COG3355 36 LLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKVNLKGGGYYYLYKPIDPEEIKKKILKDLDEWYDKMKQLI 115 (126)
T ss_pred HHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeeeccCCCceeEEEecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567899999999999999999999999999984 3444 66678888866555443 466789999999987
Q ss_pred Hh
Q 014255 423 RD 424 (428)
Q Consensus 423 ~~ 424 (428)
+.
T Consensus 116 ~~ 117 (126)
T COG3355 116 EE 117 (126)
T ss_pred HH
Confidence 64
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=6.1 Score=39.51 Aligned_cols=197 Identities=15% Similarity=0.161 Sum_probs=125.0
Q ss_pred HHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCCh
Q 014255 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (428)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~ 112 (428)
..|+..+..++....+ ....+++.-.=++++.-.|+++++...-...++. ...+.-+-.||...-++.. +.
T Consensus 149 anal~~~~~~~~s~s~-~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----d~~n~~al~vrg~~~yy~~----~~ 219 (486)
T KOG0550|consen 149 ANALPTLEKLAPSHSR-EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL----DATNAEALYVRGLCLYYND----NA 219 (486)
T ss_pred hhhhhhhhcccccccC-CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc----ccchhHHHHhccccccccc----ch
Confidence 3445555555443322 2335666666689999999999999776666554 3555566666666665543 23
Q ss_pred hHHHHHHHHHHHHHHHhhhh-hHHH-----HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHH
Q 014255 113 SLLREFYQTTLKALEEAKNE-RLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (428)
Q Consensus 113 ~~~~~~~~~~le~l~~~~~~-kl~l-----r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (428)
+.....++..+..=.....- ..+. .....-|+-.+..|.|.+|.+.+.+-....+. ...-...+|.
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------n~~~naklY~ 291 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------NKKTNAKLYG 291 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--------ccchhHHHHH
Confidence 34444555444321111111 1221 22335677788899999999999998887432 1234567788
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 187 ~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
..+.+..++|....|..--+.|.++.+. -+.+- ...|..|+..++|..|.++|-.+..+-
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~s----yikal--l~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSS----YIKAL--LRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888899999988887777766655322 22332 334778888999999999999997654
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=1.8 Score=42.93 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=74.3
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcc---hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d---~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
.-|+.|+..|+|..|..-+......+....+.++ +.....++-.++..+-.|++++.+..|...-+++.... +
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~----~ 288 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD----P 288 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC----C
Confidence 4567777788888887777776655443222211 11234567788888888999999998887776665432 3
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+...|-++. |..++..++|..|...|..+..-
T Consensus 289 ~N~KALyRr--G~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 289 NNVKALYRR--GQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred CchhHHHHH--HHHHHhhccHHHHHHHHHHHHHh
Confidence 456676666 88999999999999999999653
No 173
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.78 E-value=5.9 Score=35.64 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=42.2
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
-+.+|||++.++.|++++|++.|..+..... ... +.-....++...||-..|+..|.+|...
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----------~~~---~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESW----------AAI---VAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccH----------HHH---HHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 4455888888888888888888877655421 111 1223445777888888888888888654
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=91.69 E-value=6.6 Score=34.31 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++..++..+...|+++++++++.+.++.. + +...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~----------------------~~~~-------------------- 70 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE-E----------------------DPND-------------------- 70 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-h----------------------ccch--------------------
Confidence 36678889999999999999999998876642 1 1000
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
. ......+|.++...|++++|...+.+.....
T Consensus 71 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 71 R--SYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred H--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0 0123488999999999999999998887763
No 175
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.61 E-value=12 Score=35.12 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
..-+.+=+.-..+.|+|+++.+.|..+.+.+ |..+. . +
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----------------------p~s~~--~-----------~------ 71 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----------------------PFSPY--S-----------E------ 71 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------------CCCcc--c-----------H------
Confidence 4445555556667899999998888877654 32111 0 0
Q ss_pred HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHH---HHhhcCHHHHHHHHHHHHh
Q 014255 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM---YTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 134 l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l---~~~~~d~~ka~~~l~~a~~ 210 (428)
++.+.++-.++..|+|++|...+.+....-++.+..+ -+-++...+.+ -...+|...+++++..-.+
T Consensus 72 ---qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-------Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~ 141 (254)
T COG4105 72 ---QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-------YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE 141 (254)
T ss_pred ---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-------HHHHHHHHHHhccCCccccCHHHHHHHHHHHHH
Confidence 1345888889999999999999999999877654331 22222222222 1233577788888888777
Q ss_pred hhccCCC----hhhH----------HHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhc
Q 014255 211 IKSAIPH----PRIM----------GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (428)
Q Consensus 211 ~~~~i~~----p~~~----------~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~ 256 (428)
+....|+ |..+ +...+.-|.+|+..|.|..|...|-+..++|....
T Consensus 142 ~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 142 LVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred HHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 7666654 2222 23335668899999999999999999999886543
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.59 E-value=5.3 Score=33.06 Aligned_cols=101 Identities=10% Similarity=0.017 Sum_probs=74.1
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
+.+.+|..+-..|+.++|..++++....- . ++ ....+.++.-+..+..+|++.+|...++.+.. ..++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L---~~----~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG--L---SG----ADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---Cc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCC
Confidence 34577888888999999999999997752 1 12 23445666677888999999999999987753 2343
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+.....++...+......|++++|.+.+..++-
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445555556777788999999999988753
No 177
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=91.58 E-value=0.42 Score=36.05 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=42.9
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEE
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v 396 (428)
.++.++.-+.+++...||..|+.|++-||.+|.+++.-|++.-.-....|+.
T Consensus 6 qlRd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~~~~~gC~ 57 (78)
T PRK15431 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCL 57 (78)
T ss_pred HHHHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccCCCCCC
Confidence 4566777889999999999999999999999999999999864443444554
No 178
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.56 E-value=6.2 Score=35.50 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=74.1
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
.+.+|+-+.+.|++++|..-|+.....+. |+ .++.-.-+..+++.+.+|.+..|-..+ +++-++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De----~lk~l~~lRLArvq~q~~k~D~AL~~L-------~t~~~~ 155 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTK-----DE----NLKALAALRLARVQLQQKKADAALKTL-------DTIKEE 155 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccch-----hH----HHHHHHHHHHHHHHHHhhhHHHHHHHH-------hccccc
Confidence 56899999999999999999988877754 22 344334455667888888777755444 445555
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
...+.+-...|.+++..||=..|...|-.+....
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 6666677788999999999999999999997765
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=91.54 E-value=4.7 Score=40.62 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=54.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~ 219 (428)
..+|+++...++-.+|.+++.+.....+. + .+++..+++++...+++..|.....+|......-
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-----d-------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---- 267 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALKENPQ-----D-------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE---- 267 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh----
Confidence 35777777777777787777777755321 1 4566677778888888877777766665432211
Q ss_pred hHHHHHHhhhHhHHhhhcHHHHH
Q 014255 220 IMGIIRECGGKMHMAERQWADAA 242 (428)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~y~~A~ 242 (428)
-.-|..-+.+|...++|+.|.
T Consensus 268 --f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 268 --FETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred --HHHHHHHHHHHHhcCCHHHHH
Confidence 123344466777777777776
No 180
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.43 E-value=16 Score=36.15 Aligned_cols=113 Identities=15% Similarity=0.052 Sum_probs=78.8
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
...++|++-++...++.++..+- +.+-..+|+.. ...=...++..++.++.++-+.++-+++++|.++.+.+.
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~----k~~l~lpgt~~---~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~ 156 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYC----KTCLGLPGTRA---GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND 156 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHH----HHHhcCCCCCc---ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 34457777777666666665432 23333334321 112235556677888999999999999999999999998
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhc
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~ 256 (428)
||.+--.+...-|.++..-+||.+|.-+-.++++--...+
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 8877666777778888899999999988888766444433
No 181
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=6.8 Score=37.58 Aligned_cols=183 Identities=15% Similarity=0.132 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHhc
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDFVS 105 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~~~ 105 (428)
++..+..||+.+..-.+..+. ..-.+.-++-+|+...++..+.++|.++...+ |... +-+-+.++=+..-
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~qYrlY~AQSLY~A~i--- 93 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELEQYRLYQAQSLYKACI--- 93 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHhcc---
Confidence 344588999998887665542 25678889999999999999999999998887 6532 2233322211110
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHH
Q 014255 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (428)
Q Consensus 106 ~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~ 185 (428)
+- -...+..+..+ ++.+.-++..--+.|.+..||+..+..++.++..+- + .+.+
T Consensus 94 --~A----DALrV~~~~~D------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-------~-------Ad~~ 147 (459)
T KOG4340|consen 94 --YA----DALRVAFLLLD------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-------E-------ADGQ 147 (459)
T ss_pred --cH----HHHHHHHHhcC------CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-------c-------cchh
Confidence 10 00111111100 122322343345678888899988888877765431 1 1223
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 186 l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
....-+.++.|+++.|.+-+..|..+.. +.|.+- .--+..|...|+|..|.++-.|..+
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqvsG--yqpllA----YniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQVSG--YQPLLA----YNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhhcC--CCchhH----HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344456678888888777777765431 233221 1124567788999999999888864
No 182
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.24 E-value=17 Score=41.86 Aligned_cols=163 Identities=12% Similarity=0.162 Sum_probs=99.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc--CCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 014255 62 KLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS--GSASQNFSLLREFYQTTLKALEEAKNERLWFKTN 139 (428)
Q Consensus 62 ~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~--~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~ 139 (428)
....+.++.+++.+..+..++-+ +--.-++-++.-+.++. ..-+ ..+.+.+.++.+...... .++.
T Consensus 1466 af~LelsEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG-~eesl~kVFeRAcqycd~-------~~V~ 1533 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYG-TEESLKKVFERACQYCDA-------YTVH 1533 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhC-cHHHHHHHHHHHHHhcch-------HHHH
Confidence 34456788888888888887765 32333333433333321 1001 144566666665554322 2567
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~ 219 (428)
.+|+.||...+++++|.++|+.+.+.+.. ...++..-+...+..++-..|+..+.+|.+....-.|-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q------------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQ------------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcc------------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 79999999999999999999999998742 234444445566677777889999999987654321211
Q ss_pred hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
+-...+.+.+..||-..+...|-.-..+|
T Consensus 1602 ----~IskfAqLEFk~GDaeRGRtlfEgll~ay 1630 (1710)
T KOG1070|consen 1602 ----FISKFAQLEFKYGDAERGRTLFEGLLSAY 1630 (1710)
T ss_pred ----HHHHHHHHHhhcCCchhhHHHHHHHHhhC
Confidence 11222444455566666666665554444
No 183
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=91.24 E-value=0.2 Score=40.19 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=35.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEec
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
.=|++..|++.|+++.++|+..|-.|+.+|.|+-.||.
T Consensus 64 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 101 (102)
T PF08784_consen 64 EGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTIDD 101 (102)
T ss_dssp TTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESSST
T ss_pred CcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecccCC
Confidence 46999999999999999999999999999999999985
No 184
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.11 E-value=5.3 Score=34.08 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=56.6
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~ 220 (428)
.-|.-.++.|+|.+|.+.++.|....+.. ...-...+..+..|+..++++.|.+.+++=.++... ||.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~--hp~v 83 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFG---------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT--HPNV 83 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CCCc
Confidence 45566678899999999999999886542 122345566678899999999999998876655322 3332
Q ss_pred HHHHHHhhhHhHHhhhc
Q 014255 221 MGIIRECGGKMHMAERQ 237 (428)
Q Consensus 221 ~~~i~~~~g~~~~~~~~ 237 (428)
-- .....|+.++.+..
T Consensus 84 dY-a~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 84 DY-AYYMRGLSYYEQDE 99 (142)
T ss_pred cH-HHHHHHHHHHHHhh
Confidence 21 22334555554443
No 185
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.00 E-value=1.7 Score=36.87 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIK 85 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~ 85 (428)
..+++++|++.....+..+|-+ ..+...++.+|...|+..++++.|..+...+.
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~----E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYD----EEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3568999999999999988743 57889999999999999999999999988873
No 186
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=5.8 Score=39.47 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh--h--hhhHHHHHHHHHH-HHh----cCCCCCChhHHHHHHHHHHHHH
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--V--TRNYSEKCINNIM-DFV----SGSASQNFSLLREFYQTTLKAL 126 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~--~k~~~~k~v~~il-~~~----~~~~~~~~~~~~~~~~~~le~l 126 (428)
..+.-+..|++.|+|..|...|...+.+++.. . ...+....++... -++ .+... .....+..+..|++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~--~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE--YKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh--HHHHHHHHHHHHhc-
Confidence 33445789999999999999999988887321 1 1111111111111 111 11111 11122222222221
Q ss_pred HHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 127 EEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 127 ~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
+. +|. +-.+|-|+.++..|+|+.|...++.+.+.-
T Consensus 287 ~~-~N~----KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 DP-NNV----KALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred CC-Cch----hHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 11 222 234477899999999999999999998883
No 187
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.50 E-value=0.33 Score=30.43 Aligned_cols=32 Identities=22% Similarity=0.589 Sum_probs=27.6
Q ss_pred HHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHH
Q 014255 39 FAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMM 74 (428)
Q Consensus 39 ~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~ 74 (428)
|++.|+.+|++ ..++.+++.+|...|+++++.
T Consensus 2 y~kAie~~P~n----~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNN----AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCC----HHHHHHHHHHHHHCcCHHhhc
Confidence 67778888765 788999999999999999886
No 188
>PRK15331 chaperone protein SicA; Provisional
Probab=90.45 E-value=11 Score=32.87 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=69.4
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~ 219 (428)
...|-=++..|+|++|..+.+=+-.. |. .-.++.+-.+-++..+|++.+|...|..|-.+...-|.|.
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~----~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIY--------DF----YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 46777788999999999887777654 11 1134556666778899999999999988865543323342
Q ss_pred hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
..+|.-++..|+-..|..+|..+...
T Consensus 109 ------f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 109 ------FFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ------chHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 34578888899999999999998774
No 189
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=9.4 Score=38.27 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~ 111 (428)
+++|+=.|.......| ...+++.-++..|-..|+..+++-.-....+.+ + ..+++-+.+-.. .+...|. .
T Consensus 350 ~~~A~IaFR~Aq~Lap----~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~--~sA~~LtL~g~~--V~~~dp~-~ 419 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAP----YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-Q--NSARSLTLFGTL--VLFPDPR-M 419 (564)
T ss_pred hHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-h--cchhhhhhhcce--eeccCch-h
Confidence 3444444444443332 235666777777777777777776666665555 3 223333332111 1111122 3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHH
Q 014255 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (428)
Q Consensus 112 ~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l 191 (428)
.+..++|++..+. -+-.|+.-...+|.+..-.|.+.++..+|+.-..... |+ . ++-....+
T Consensus 420 rEKAKkf~ek~L~------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-----D~----~----LH~~Lgd~ 480 (564)
T KOG1174|consen 420 REKAKKFAEKSLK------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-----DV----N----LHNHLGDI 480 (564)
T ss_pred HHHHHHHHHhhhc------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-----cc----H----HHHHHHHH
Confidence 4566777777655 2335666777999999999999999999998887753 22 1 22223356
Q ss_pred HHhhcCHHHHHHHHHHHHhh
Q 014255 192 YTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 192 ~~~~~d~~ka~~~l~~a~~~ 211 (428)
..+.+.+.+|-..|..|..+
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhc
Confidence 66777777777777777644
No 190
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.41 E-value=0.47 Score=43.41 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=50.1
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
..|++.-..|.|.++|..|||-.+++-.-+-.++.+|.|.|.||--.+.|+++..
T Consensus 206 v~YIk~nKvV~ledLas~f~Lrtqd~inriq~~l~eg~ltGVmDDRGKfIYIS~e 260 (299)
T KOG3054|consen 206 VEYIKKNKVVPLEDLASEFGLRTQDSINRIQELLAEGLLTGVMDDRGKFIYISME 260 (299)
T ss_pred HHHHHhcCeeeHHHHHHHhCccHHHHHHHHHHHHHhhhheeeecCCCceEEecHH
Confidence 4566777899999999999999999999999999999999999999999999864
No 191
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=89.66 E-value=5.2 Score=40.34 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (428)
..++.|++.|+++.+.+++ +..-+++++...++-.++++++.+.++.. +. . ..++..-.+.+-.
T Consensus 183 ~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~-d----~~LL~~Qa~fLl~--- 246 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE-------VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQ-D----SELLNLQAEFLLS--- 246 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CC-C----HHHHHHHHHHHHh---
Confidence 3578999999998777643 22347888888888889998888888654 32 1 3333333333322
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhh-HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 110 QNFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~k-l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
...++.+++..+.+.+-. --++.-..||+.|...|+|++|+-.|....-..
T Consensus 247 ------k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 ------KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred ------cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 112344555444431111 223444578999999999999998887766553
No 192
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.60 E-value=1.3 Score=33.66 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=47.0
Q ss_pred hhHHHHHHhhcccCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 014255 15 VSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYRE 79 (428)
Q Consensus 15 ~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~ 79 (428)
|..++..|+. .+.++|+....+++++.++..+ .|+++..+++.|.+-|++.+++++-..
T Consensus 10 ie~GlkLY~~-----~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 10 IEKGLKLYHQ-----NETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHhcc-----chHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666644 3578999999999998765433 799999999999999999999876543
No 193
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.28 E-value=0.68 Score=27.99 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
++-+++.++.+.|+++++.+.++.++..+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999999876
No 194
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=88.88 E-value=6.3 Score=34.23 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.+++++|.+.|+-+...++. .+.-.-.++-++-..|+|+++++.|......-
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAW----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45799999999999888653 47777999999999999999999999887763
No 195
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=88.70 E-value=1.2 Score=30.01 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=33.1
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
.++.++.--..++..+||+.+|++..-|-..+-+|...|.|.
T Consensus 7 ~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 7 KILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 344455445569999999999999999999999999999874
No 196
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=88.69 E-value=45 Score=37.30 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHH-------------HHHHHHhcCCCCCChhHHHH
Q 014255 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI-------------NNIMDFVSGSASQNFSLLRE 117 (428)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v-------------~~il~~~~~~~~~~~~~~~~ 117 (428)
...+.+..+|+..|...|+++++.+.+...+... |.-...+.-..+ -.+++.+...+ +......
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~--~~~~ve~ 104 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNL--KWAIVEH 104 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhhhhhhhccccc--chhHHHH
Confidence 4569999999999999999999999999888876 543222222222 02222222211 1222333
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcC
Q 014255 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (428)
Q Consensus 118 ~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d 197 (428)
++...++ ..+.+. ....||..|-..|++++|...++++.+.-++ + ...+.-++ -.|... |
T Consensus 105 ~~~~i~~----~~~~k~---Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-----n----~~aLNn~A---Y~~ae~-d 164 (906)
T PRK14720 105 ICDKILL----YGENKL---ALRTLAEAYAKLNENKKLKGVWERLVKADRD-----N----PEIVKKLA---TSYEEE-D 164 (906)
T ss_pred HHHHHHh----hhhhhH---HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-----c----HHHHHHHH---HHHHHh-h
Confidence 3333222 122221 3457899999999999999999999998532 2 22222222 234444 9
Q ss_pred HHHHHHHHHHHH
Q 014255 198 NKKLKQLYQKAL 209 (428)
Q Consensus 198 ~~ka~~~l~~a~ 209 (428)
.++|..++.+|.
T Consensus 165 L~KA~~m~~KAV 176 (906)
T PRK14720 165 KEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHH
Confidence 999999988874
No 197
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=88.59 E-value=54 Score=38.06 Aligned_cols=164 Identities=12% Similarity=0.104 Sum_probs=103.7
Q ss_pred HHHhhcccCCCCHHHHHHHHHHhhcCC-CccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 014255 20 CSILEKGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (428)
Q Consensus 20 ~~~~ak~~~~~~~~~Ai~~~~~ii~~~-~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (428)
+-|.|=-+.-++.++|-+.+++.+..- .-..+...+....+..+...-|.-+.+.+.+++...+..+ -.+=.-+.
T Consensus 1462 I~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~----~~V~~~L~ 1537 (1710)
T KOG1070|consen 1462 IRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA----YTVHLKLL 1537 (1710)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch----HHHHHHHH
Confidence 445555555666777777777766532 1112223445555566666667777777777777776522 12222233
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhh
Q 014255 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (428)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (428)
.+++...+ .....++++..++.+. +..++| .+++.+++...+-++|.++|.+..+-++ +
T Consensus 1538 ~iy~k~ek-----~~~A~ell~~m~KKF~--q~~~vW----~~y~~fLl~~ne~~aa~~lL~rAL~~lP----------k 1596 (1710)
T KOG1070|consen 1538 GIYEKSEK-----NDEADELLRLMLKKFG--QTRKVW----IMYADFLLRQNEAEAARELLKRALKSLP----------K 1596 (1710)
T ss_pred HHHHHhhc-----chhHHHHHHHHHHHhc--chhhHH----HHHHHHHhcccHHHHHHHHHHHHHhhcc----------h
Confidence 33333332 2335566666655544 123355 4778899988888889999998888764 2
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014255 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (428)
Q Consensus 179 ~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a 208 (428)
..+++++.--+++-++.||-+++|.++..-
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 567899988889999999999999887654
No 198
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=88.35 E-value=0.91 Score=32.16 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=37.8
Q ss_pred HHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCce
Q 014255 343 TQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (428)
Q Consensus 343 ~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i 385 (428)
...|+.+++.-..++++++|+.||+|..-+.+-+..|-..|.+
T Consensus 2 ~~~Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~i 44 (57)
T PF08220_consen 2 QQQILELLKEKGKVSVKELAEEFGVSEMTIRRDLNKLEKQGLI 44 (57)
T ss_pred HHHHHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3456777777889999999999999999999999999998874
No 199
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.34 E-value=1.3 Score=26.88 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
+++..++.++...|+++++++.+++.+...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999998864
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.69 E-value=21 Score=35.80 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.=..|++.++.+ ..++.-=+.+++-.++.+.++.++++-+..- |.-.+++.+-+.-..++.-....
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n----~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-pdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATN----AEALYVRGLCLYYNDNADKAINHFQQALRLD-PDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred cccchhHHHHHHHHHhcccch----hHHHHhcccccccccchHHHHHHHhhhhccC-hhhhhHHhHhhhHHHHHHHHhhh
Confidence 346778888877887776533 3344444678888899999999999888875 54455555554444444333211
Q ss_pred C-----CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHH
Q 014255 109 S-----QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (428)
Q Consensus 109 ~-----~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (428)
+ .+....-+.|.-++. +.. .+.+.-.++..+.|......|...+|+.--.+..+. | ...+.
T Consensus 257 N~~fk~G~y~~A~E~Yteal~-idP-~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D----~syik 322 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALN-IDP-SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------D----SSYIK 322 (486)
T ss_pred hhHhhccchhHHHHHHHHhhc-CCc-cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------C----HHHHH
Confidence 1 123333333333322 111 344555677778888888888888888777666666 3 34678
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014255 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 184 ~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (428)
-++..++.++.+++|..|.+.+++|.+...+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8889999999999999999999999766544
No 201
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=87.66 E-value=30 Score=34.03 Aligned_cols=192 Identities=14% Similarity=0.178 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+|...||+....+++.. .|-......=+++|...|...+++.-++...++. .. + ++..-.+-..+-...
T Consensus 168 ~GD~~~ai~~i~~llEi~----~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~D-n----Te~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQ----PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QD-N----TEGHYKISQLLYTVG 237 (504)
T ss_pred CCchhhHHHHHHHHHhcC----cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-cc-c----hHHHHHHHHHHHhhh
Confidence 456788888888887764 3544455555788888888888887777666653 11 1 112222222211111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHH---HHhHHHHH------HHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhh
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWF---KTNLKLCK------IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~l---r~~~~La~------l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~ 179 (428)
+ ...-+..++||++-.++-|..+ +-..++.+ -..+.++|.++++-.+.+.+.-+.. ..
T Consensus 238 d-----~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~--------~~ 304 (504)
T KOG0624|consen 238 D-----AENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE--------TM 304 (504)
T ss_pred h-----HHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc--------cc
Confidence 1 2344555666666555555544 11122222 2345577888887777776653321 12
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh-hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR-IMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 180 ~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~-~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
..+..+-...+.+..-+++.+|.+-...+..+ +|. ++.- .--+..|+.+..|..|...|-.+.+
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-----d~~dv~~l--~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-----DPDDVQVL--CDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhc-----CchHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 23334334445667778888876554444322 232 2322 2235677788899999999888854
No 202
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.76 E-value=1.9 Score=27.47 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
..++.+++.+|...|+++++.+++.+.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 5688999999999999999999999998876
No 203
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.74 E-value=1 Score=28.44 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=23.3
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
..||.+|...|+|++|.+++++......
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999775543
No 204
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.62 E-value=6.5 Score=37.64 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHH-hhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE-AKN 131 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~-~~~ 131 (428)
....|+.=+.=..+.++|.++++.|+.-+.+. +... +==+-| .- .+.. ...|+-+.+-++. ..-
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nA---VyycNR-AA-Ay~~---------Lg~~~~AVkDce~Al~i 144 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-PTNA---VYYCNR-AA-AYSK---------LGEYEDAVKDCESALSI 144 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcc---hHHHHH-HH-HHHH---------hcchHHHHHHHHHHHhc
Confidence 46677777888888899999999999888875 4321 100000 00 0000 0111111111111 123
Q ss_pred hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 132 ~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
+--+.|...+||..|+..|+|.+|.+.+++....
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 3356677889999999999999999998887776
No 205
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.59 E-value=2.1 Score=26.12 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
+++..+|.+|...|+++++++.|++.++.-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 577899999999999999999999998864
No 206
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.16 E-value=2.3 Score=25.94 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
+++..++.+|.+.|+++++.++|++.++.-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567889999999999999999999998864
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=85.94 E-value=3.4 Score=34.20 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
+++++|+..|++.++...+ +.-..+++-+++..+...|+++++...++..+..+
T Consensus 15 G~~~~Ai~~Y~~Al~~gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 15 GREEEAIPLYRRALAAGLS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred CCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4699999999999886543 23357899999999999999999999998887655
No 208
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=85.69 E-value=1.9 Score=31.69 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=35.3
Q ss_pred HHHHhhccccc--cchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 345 VLLKLIKPYTR--IRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 345 ~l~~~~~pYs~--I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
.++.++..-.. ++..+||+.+|++...|.+.|.+|...|.+.-
T Consensus 10 ~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~ 54 (68)
T smart00550 10 KILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCK 54 (68)
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44555544434 99999999999999999999999999999854
No 209
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.16 E-value=2.1 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.482 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
.+++|.++...|++++|.+.++++....+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45899999999999999999999988754
No 210
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=85.01 E-value=3.2 Score=29.38 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=34.7
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
.++..+||+.++++..-+-..|.+|+..|.|.-.-|..++
T Consensus 21 ~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 21 ELTQSELAERLGISKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp GEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 4999999999999999999999999999999877776654
No 211
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.60 E-value=33 Score=37.03 Aligned_cols=101 Identities=12% Similarity=0.157 Sum_probs=49.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHH----hhhhhHH
Q 014255 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE----AKNERLW 135 (428)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~----~~~~kl~ 135 (428)
-+..+.+.|++|.++.+|..-.-.. ..+.-+-.++--...+..+.++++ ..+...+|..+-+.-.. -..+++|
T Consensus 712 wg~hl~~~~q~daainhfiea~~~~-kaieaai~akew~kai~ildniqd--qk~~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANCLI-KAIEAAIGAKEWKKAISILDNIQD--QKTASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhhHH-HHHHHHhhhhhhhhhHhHHHHhhh--hccccccchHHHHHhccchhHHHHHHHH
Confidence 3667788888998888776544333 222222222222222222222222 22333444444332111 1234455
Q ss_pred H--HHhHHHHHHHHhhccHHHHHHHHHHHH
Q 014255 136 F--KTNLKLCKIWFDMGEYGRMSKILKELH 163 (428)
Q Consensus 136 l--r~~~~La~l~~~~g~~~~A~~~l~el~ 163 (428)
. .....-...|-..|+|..|.++-.+.+
T Consensus 789 ~e~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 789 TEADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HhcchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 5 223345566778888888877665554
No 212
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=84.30 E-value=7.3 Score=29.69 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=38.5
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHH
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYT 409 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~ 409 (428)
.++.++||+.+++|+..+++.+.++...|.|...=-. +|-....+++..-+..+
T Consensus 25 ~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~-~GGy~L~~~~~~Itl~d 78 (83)
T PF02082_consen 25 PVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGR-GGGYRLARPPEEITLLD 78 (83)
T ss_dssp -BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETST-TSEEEESS-CCGSBHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCC-CCceeecCCHHHCCHHH
Confidence 3999999999999999999999999999998665433 44555544433224443
No 213
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.22 E-value=1.2 Score=29.74 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=24.4
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
.+.||..|.+.||++.|.++|+++...
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 358999999999999999999999854
No 214
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.77 E-value=2.3 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~ 169 (428)
.+...||..|...|++++|.+++++........
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 345689999999999999999999998876544
No 215
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.53 E-value=19 Score=34.59 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=67.5
Q ss_pred HHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHH
Q 014255 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (428)
Q Consensus 143 a~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~ 222 (428)
|.=..+.++|++|...+.+.-.++++ ++ =+|...+..|.++|.+..|-.-..+|..+ +|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-----nA-------VyycNRAAAy~~Lg~~~~AVkDce~Al~i-----Dp~ys- 149 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-----NA-------VYYCNRAAAYSKLGEYEDAVKDCESALSI-----DPHYS- 149 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-----cc-------hHHHHHHHHHHHhcchHHHHHHHHHHHhc-----ChHHH-
Confidence 44456678999999999999888643 21 25566778899999999987776666543 44432
Q ss_pred HHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 223 IIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 223 ~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+-+.-.|+.+...++|..|...|..+.+-
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 23344589999999999999999988763
No 216
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=82.98 E-value=80 Score=34.81 Aligned_cols=163 Identities=12% Similarity=0.171 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
.-++..|+..|-..|+..++..+|++-..+. +.+ ..+.+ .+ +..++..+++-. .+.+.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs-nAI-------------RlcKE-nd----~~d~L~nlal~s---~~~d~ 1024 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQAFS-NAI-------------RLCKE-ND----MKDRLANLALMS---GGSDL 1024 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHH-------------HHHHh-cC----HHHHHHHHHhhc---CchhH
Confidence 4578899999999999999999998877764 332 22221 11 222322222210 01111
Q ss_pred HHH-------HHh-HHHHHHHHhhccHHHHHHHHH---------HHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 014255 134 LWF-------KTN-LKLCKIWFDMGEYGRMSKILK---------ELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK 196 (428)
Q Consensus 134 l~l-------r~~-~~La~l~~~~g~~~~A~~~l~---------el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~ 196 (428)
+.. -.+ .+-..+|-..|-+.+|+++-- =+-+.+. +|+ |+ +++-..+.++....
T Consensus 1025 v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd--~~s-Dp-------~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1025 VSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD--AGS-DP-------KLLRRCADFFENNQ 1094 (1416)
T ss_pred HHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC--CCC-CH-------HHHHHHHHHHHhHH
Confidence 111 001 133455666677777664432 2222221 133 42 23334455666666
Q ss_pred CHHHHHHHHHHHHhhhccC-----------------------CChhhH--HHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 197 NNKKLKQLYQKALAIKSAI-----------------------PHPRIM--GIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 197 d~~ka~~~l~~a~~~~~~i-----------------------~~p~~~--~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
+|.||..++-.++....++ .+|..+ -.+-+.-|..++.+|+|..|.+.|.++
T Consensus 1095 qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 7778777776665433211 012222 234456677888899999999888776
No 217
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.90 E-value=14 Score=34.57 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHH
Q 014255 114 LLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 193 (428)
Q Consensus 114 ~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~ 193 (428)
...+.++.+.+.....+..|+...+...+|..|+..|+|++|.++++.+.....+ + .+.....++.....+.+.
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~-e-----gW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR-E-----GWWSLLTEVLWRLLECAK 229 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-C-----CcHHHHHHHHHHHHHHHH
Confidence 3456666666666665667777788889999999999999999999999544321 1 123444455555555666
Q ss_pred hhcCHHH
Q 014255 194 ETKNNKK 200 (428)
Q Consensus 194 ~~~d~~k 200 (428)
..||...
T Consensus 230 ~~~~~~~ 236 (247)
T PF11817_consen 230 RLGDVED 236 (247)
T ss_pred HhCCHHH
Confidence 7777665
No 218
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=82.71 E-value=3.2 Score=28.89 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=32.3
Q ss_pred hcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 350 IKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 350 ~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
+.|=..+ +..+||+.+|++...|.+.+.+|..+|.|.
T Consensus 14 ~~~~~~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~ 51 (60)
T smart00345 14 LRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQ 51 (60)
T ss_pred CCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3444567 899999999999999999999999999875
No 219
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.44 E-value=3.6 Score=24.88 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=24.4
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
....+|.++...|+|++|.+.+++.....
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34689999999999999999999988774
No 220
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=82.13 E-value=22 Score=33.41 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=71.2
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+|+.+|+..|++.....|.+ | +...-++-+|-+.|+.+++..-|.+.++++ +.-++ +++++.-.+.-.
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d--~--~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~-----~~nNlgms~~L~ 181 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTD--W--EAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPS-----IANNLGMSLLLR 181 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCC--h--hhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCch-----hhhhHHHHHHHc
Confidence 4567889999999988777643 3 566778888999999999999999998887 54332 444443332211
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKE 161 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~e 161 (428)
.+ .+.....+.-. .+....+. ++..+|+-..-..|++.+|.++...
T Consensus 182 gd--~~~A~~lll~a--~l~~~ad~----~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 182 GD--LEDAETLLLPA--YLSPAADS----RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred CC--HHHHHHHHHHH--HhCCCCch----HHHHHHHHHHhhcCChHHHHhhccc
Confidence 12 22222222211 11111111 3455777777788888888766543
No 221
>PHA02943 hypothetical protein; Provisional
Probab=82.07 E-value=17 Score=31.14 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=56.2
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHHHHHHHHHHHHHh
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRKKRRD 424 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~ 424 (428)
-++.++ ..-.-+.++||+.+|+|..+|+..|.-+=.+|.+.- +-++...+..-++++ -.+.+.+.-..+..+++.
T Consensus 15 eILE~L-k~G~~TtseIAkaLGlS~~qa~~~LyvLErEG~Vkr-V~~G~~tyw~l~~da---y~~~v~~~~Relwrlv~s 89 (165)
T PHA02943 15 KTLRLL-ADGCKTTSRIANKLGVSHSMARNALYQLAKEGMVLK-VEIGRAAIWCLDEDA---YTNLVFEIKRELWRLVCN 89 (165)
T ss_pred HHHHHH-hcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEE-EeecceEEEEEChHH---HHHHHHHHHHHHHHHHHh
Confidence 445555 556778999999999999999999999999999864 556666666666642 223355666666666666
Q ss_pred hhc
Q 014255 425 NQR 427 (428)
Q Consensus 425 ~~~ 427 (428)
+.+
T Consensus 90 ~~~ 92 (165)
T PHA02943 90 SRL 92 (165)
T ss_pred ccc
Confidence 543
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.85 E-value=48 Score=31.48 Aligned_cols=104 Identities=11% Similarity=0.124 Sum_probs=73.1
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
++..-++.+++..|+|.-..+.+.++.+.-.. .+ -.+....+++....||..-|+.+.+...+.++.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e----~~-------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~ 246 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE----QE-------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD 246 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc----cc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 56667888899999999999999999885221 12 22334456788889999999999997766655443
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
.-.-..-+-.-++.+|...+||..|...|-++...
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhcccc
Confidence 21111112234567888999999999998887653
No 223
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.01 E-value=4.7 Score=24.43 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 183 e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
+++...+.+|..+|++.+|..++.++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456677788888888888888888886654
No 224
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=80.91 E-value=4.7 Score=28.25 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=41.0
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
++.++..+-.++..+||+.++++..-+=..+-+|...|.|.-..|..|+
T Consensus 8 iL~~l~~~~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~~~~D~ 56 (59)
T PF01047_consen 8 ILRILYENGGITQSELAEKLGISRSTVTRIIKRLEKKGLIERERDPDDR 56 (59)
T ss_dssp HHHHHHHHSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTET
T ss_pred HHHHHHHcCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 3444555667999999999999999999999999999999988887765
No 225
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.41 E-value=47 Score=30.43 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhh-HHHHHhHHHHHHHHhhccHHH-------HHHHHHHHHhhccCCCCCcchhhhhhHH
Q 014255 111 NFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGR-------MSKILKELHKSCQREDGTDDQKKGSQLL 182 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~~~k-l~lr~~~~La~l~~~~g~~~~-------A~~~l~el~~~~~~~~~~~d~~~~~~~~ 182 (428)
+.+...+.|.+++-+.+....+. ....+.+++|=+|.+.|+-+. |++.+.+....-..+...++ -.
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~------~~ 165 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD------EA 165 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch------HH
Confidence 46677888888888766533222 344788899999999998543 55555555444333221222 23
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 183 EVYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 183 e~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
.+....+.++.+.|++.+|...+.+...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3555667899999999999999877643
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=80.31 E-value=4.9 Score=40.81 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
.+++++|+..|++.++.+|++.+ .--++.+++-+|..+|+.+++++.+...+..
T Consensus 88 lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 88 KGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46799999999999999886533 1246799999999999999999999999885
No 227
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.74 E-value=23 Score=38.12 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=46.3
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
++..+-..--....+|.+|..++..++..-+ ...+|-..+.-|...|++..|..++.++-..
T Consensus 733 ~~~~kaieaai~akew~kai~ildniqdqk~-------------~s~yy~~iadhyan~~dfe~ae~lf~e~~~~ 794 (1636)
T KOG3616|consen 733 NCLIKAIEAAIGAKEWKKAISILDNIQDQKT-------------ASGYYGEIADHYANKGDFEIAEELFTEADLF 794 (1636)
T ss_pred hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-------------ccccchHHHHHhccchhHHHHHHHHHhcchh
Confidence 5555666666667789999999988876522 2346677788899999999999999887433
No 228
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=79.60 E-value=27 Score=30.38 Aligned_cols=71 Identities=21% Similarity=0.101 Sum_probs=48.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE-E-EecCCCEEEEccCCccchHHHHHH----HHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG-H-IDQVNRLLERGDRSKGMKKYTAID----KWNSQLRKKRR 423 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g-~-IDq~~g~v~~~~~~~~~~~~~~l~----~w~~~v~~l~~ 423 (428)
-+-++-++||+.+|++..+|-+.|-+|-.+|.+.- + =|..+|.....|.-......+.+. ...+.+.+.++
T Consensus 26 ~~~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik~~~~~~~~~lk~~l~ 102 (158)
T TIGR00373 26 KGEFTDEEISLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLKRKLEETAKKLREKLE 102 (158)
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999943 2 245557766665333334444333 34444444443
No 229
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=79.29 E-value=48 Score=29.88 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=56.2
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
.+-+|+-.+..++...|...|+++-..-+. +-+ -+-.+.-.+.+...|.+..|+..++-+.... |
T Consensus 127 lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa--~r~--------pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----p 191 (251)
T COG4700 127 LLGLAQAQFAIQEFAAAQQTLEDLMEYNPA--FRS--------PDGHLLFARTLAAQGKYADAESAFEVAISYY-----P 191 (251)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhcCCc--cCC--------CCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----C
Confidence 346677777888888888888777655321 110 1223455678888888888887777665321 2
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
--+++++. |.....+|+-.+|...+.+.+++
T Consensus 192 g~~ar~~Y--~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 192 GPQARIYY--AEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred CHHHHHHH--HHHHHHhcchhHHHHHHHHHHHH
Confidence 22444333 44445555555665555555543
No 230
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=78.36 E-value=13 Score=26.76 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=38.0
Q ss_pred cchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 356 I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
++.++||+.++++...+-..+..|...|.|...-+...+...+++
T Consensus 21 ~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 21 LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 899999999999999999999999999999887666445555443
No 231
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=78.28 E-value=15 Score=34.08 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=49.0
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHHHHHHHHHHHHH
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRKKRR 423 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~ 423 (428)
..+...--++.-++||..+|++++.|-..+-+|+.+|.++- +.-|.-+++++- .+.+.+|.++++.-.+
T Consensus 17 ~ei~~~qp~v~q~eIA~~lgiT~QaVsehiK~Lv~eG~i~~---~gR~~Y~iTkkG-----~e~l~~~~~dlr~f~~ 85 (260)
T COG1497 17 SEIAVRQPRVKQKEIAKKLGITLQAVSEHIKELVKEGLIEK---EGRGEYEITKKG-----AEWLLEQLSDLRRFSE 85 (260)
T ss_pred HHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHHHhccceee---cCCeeEEEehhH-----HHHHHHHHHHHHHHHH
Confidence 33333335788999999999999999999999999998754 333455555443 5666666666665544
No 232
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=77.97 E-value=5.5 Score=31.87 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=38.5
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEec
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQ 391 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq 391 (428)
.++..+....+++++.||+.+|+++..+-+.+.+|...|.|. +.+|+
T Consensus 7 ~il~~L~~~~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~~~~~~~~ 56 (108)
T smart00344 7 KILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYTAVINP 56 (108)
T ss_pred HHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeceEEEeCH
Confidence 344455445789999999999999999999999999999886 45564
No 233
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.93 E-value=18 Score=28.22 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=46.4
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCccc--h---hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 25 KGLVETDPEGALAGFAEVVAMEPEKA--E---WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 25 k~~~~~~~~~Ai~~~~~ii~~~~~~~--~---~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.++..+|+.+|++.+....+...... . -..-++-.++.++...|+++++++.++..+...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45677899999999999987543111 1 123466778899999999999999999998876
No 234
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=77.87 E-value=7.6 Score=27.51 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=30.6
Q ss_pred ccccccc-hhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 351 KPYTRIR-IPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 351 ~pYs~I~-l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
.+-..+. ..+||+.++++...|.+.+.+|...|-|.
T Consensus 20 ~~~~~~~~~~~la~~~~is~~~v~~~l~~L~~~G~i~ 56 (66)
T cd07377 20 KPGDRLPSERELAEELGVSRTTVREALRELEAEGLVE 56 (66)
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3444444 99999999999999999999999999875
No 235
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=77.80 E-value=4.1 Score=25.22 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=25.1
Q ss_pred cchhhHHhHhCCChHHHHHHHHHHHHcCce
Q 014255 356 IRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (428)
Q Consensus 356 I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i 385 (428)
++=.+||..+|++.+-|-+.+.++-.+|.|
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 466899999999999999999999999875
No 236
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=77.69 E-value=7.5 Score=26.11 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=30.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
..++..+||+.++++...+...+..|...|.|.-
T Consensus 13 ~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 13 GKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999999999999999988753
No 237
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.52 E-value=7.2 Score=33.07 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHH
Q 014255 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 372 (428)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~v 372 (428)
|++...-.+.+-.-..|+...-+.++.|.-.=. .+.-+.-+.+.-|.+...-++..|++|...++|..+|+|++++
T Consensus 74 ~El~aaWgiGQkiWq~Df~GiYeaI~~~dWSee----ak~imaAf~D~~~kR~FaLl~qAYssI~~~D~A~FlGl~~ddA 149 (197)
T KOG4414|consen 74 PELGAAWGIGQKIWQHDFAGIYEAINAHDWSEE----AKDIMAAFRDATRKRAFALLLQAYSSIIADDFAAFLGLPEDDA 149 (197)
T ss_pred chhhhhhhhhHHHHhcccchHHHHHhhhcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 444444444455555666665555555431111 1122344555666677777788999999999999999999988
Q ss_pred HHHHHH
Q 014255 373 EQLLVS 378 (428)
Q Consensus 373 E~~l~~ 378 (428)
-+-+.+
T Consensus 150 tk~ilE 155 (197)
T KOG4414|consen 150 TKGILE 155 (197)
T ss_pred HHHHHH
Confidence 766543
No 238
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=77.41 E-value=9.2 Score=32.19 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=39.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
..++.++||+.+++|...+++.+.+|...|.+...=....|..-..+++
T Consensus 24 ~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~~ 72 (135)
T TIGR02010 24 GPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPAE 72 (135)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCHH
Confidence 3699999999999999999999999999999976545555655444443
No 239
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=77.12 E-value=71 Score=30.66 Aligned_cols=126 Identities=16% Similarity=0.236 Sum_probs=82.0
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcc-chhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Q 014255 27 LVETDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~-~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (428)
..+.+++.-+..++.-+..+|++ .+| -.|+.+|..+|+++.+..-|.+-..+. +. +..... ..-.++-+-.
T Consensus 133 ~~~~~~~~l~a~Le~~L~~nP~d~egW-----~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~-n~~~~~-g~aeaL~~~a 204 (287)
T COG4235 133 PAEQEMEALIARLETHLQQNPGDAEGW-----DLLGRAYMALGRASDALLAYRNALRLA-GD-NPEILL-GLAEALYYQA 204 (287)
T ss_pred CCcccHHHHHHHHHHHHHhCCCCchhH-----HHHHHHHHHhcchhHHHHHHHHHHHhC-CC-CHHHHH-HHHHHHHHhc
Confidence 33445788888899988888854 566 679999999999999999999998876 53 222111 1222222222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccC
Q 014255 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (428)
Q Consensus 106 ~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~ 168 (428)
. +.. .......+..++. . +.-=.|...-||.-+++.|+|.+|....+.+.+....
T Consensus 205 ~-~~~-ta~a~~ll~~al~---~---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 205 G-QQM-TAKARALLRQALA---L---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred C-Ccc-cHHHHHHHHHHHh---c---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 1 221 2223333333322 1 1111244568999999999999999999999988754
No 240
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.98 E-value=85 Score=32.90 Aligned_cols=160 Identities=10% Similarity=0.103 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh-------------------hhhhH
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-------------------VTRNY 92 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-------------------~~k~~ 92 (428)
-..||..+++.++.+|.+ ..++..|+--|+.+|.-..++.++..=+... +. ..+..
T Consensus 335 E~~ai~AL~rcl~LdP~N----leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~~s~~~~~~ 409 (579)
T KOG1125|consen 335 EQNAISALRRCLELDPTN----LEALMALAVSYTNEGLQNQALKMLDKWIRNK-PKYVHLVSAGENEDFENTKSFLDSSH 409 (579)
T ss_pred hHHHHHHHHHHHhcCCcc----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-ccchhccccCccccccCCcCCCCHHH
Confidence 357888899998888765 6789999999999998888888877765432 11 12334
Q ss_pred HHHHHHHHHHHhcCCC---CCChhH-------HHHHHHHHHHHHHHh-----hhhhHHHHHhHHHHHHHHhhccHHHHHH
Q 014255 93 SEKCINNIMDFVSGSA---SQNFSL-------LREFYQTTLKALEEA-----KNERLWFKTNLKLCKIWFDMGEYGRMSK 157 (428)
Q Consensus 93 ~~k~v~~il~~~~~~~---~~~~~~-------~~~~~~~~le~l~~~-----~~~kl~lr~~~~La~l~~~~g~~~~A~~ 157 (428)
.+++-...++.....| +.+... +..-|+.+.+|++.+ ++..+| .|||..+-......+|..
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lW----NRLGAtLAN~~~s~EAIs 485 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLW----NRLGATLANGNRSEEAIS 485 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHH----HHhhHHhcCCcccHHHHH
Confidence 4444444455433323 211111 233456667777653 466676 577888888888999999
Q ss_pred HHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 158 ILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 158 ~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.+++....-+. -+.+-....--|..+|.|.+|..++-.|..+.
T Consensus 486 AY~rALqLqP~------------yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 486 AYNRALQLQPG------------YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcCCC------------eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99998887321 11222222335778899999988887776543
No 241
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.33 E-value=76 Score=31.46 Aligned_cols=122 Identities=16% Similarity=0.295 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHH------H-----
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQ-TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK------C----- 96 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~-l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k------~----- 96 (428)
..|++.|+.+++=-.+.+.+. ...+.. |+-+++..|+|+++++.|+-+... .. ..+.+.- .
T Consensus 35 ~rDytGAislLefk~~~~~EE----E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~-~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREE----EDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DD-APAELGVNLACCKFYLGQY 107 (557)
T ss_pred cccchhHHHHHHHhhccchhh----hHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CC-CCcccchhHHHHHHHHHHH
Confidence 558999999887665443211 123333 788999999999999999887653 11 1111110 0
Q ss_pred --HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHH----------HHhHHHHHHHHhhccHHHHHHHHHHHHh
Q 014255 97 --INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF----------KTNLKLCKIWFDMGEYGRMSKILKELHK 164 (428)
Q Consensus 97 --v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~l----------r~~~~La~l~~~~g~~~~A~~~l~el~~ 164 (428)
-+.+... .|..+. ...-+..++.. -++++.|+ .-.+-||.+++..-.|++|.+++..+..
T Consensus 108 ~eA~~~~~k---a~k~pL-~~RLlfhlahk----lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEK---APKTPL-CIRLLFHLAHK----LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhh---CCCChH-HHHHHHHHHHH----hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0111222 222111 11223333322 24555444 1233688888888899999999988876
Q ss_pred h
Q 014255 165 S 165 (428)
Q Consensus 165 ~ 165 (428)
.
T Consensus 180 d 180 (557)
T KOG3785|consen 180 D 180 (557)
T ss_pred c
Confidence 4
No 242
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=76.25 E-value=72 Score=33.49 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=42.9
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
-+|-.+...|++++|...+++....- + + +..|...++++...|+..+|.+.|.+|..+.
T Consensus 425 ala~~~~~~g~~~~A~~~l~rAl~L~--------p---s--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 425 ILAVQALVKGKTDEAYQAINKAIDLE--------M---S--WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--------C---C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34555556788888888888877661 1 1 4577777888888888888888888886554
No 243
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=76.10 E-value=11 Score=32.04 Aligned_cols=54 Identities=7% Similarity=0.021 Sum_probs=44.2
Q ss_pred hccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCc
Q 014255 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK 403 (428)
Q Consensus 350 ~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~ 403 (428)
..|=..++...||+.+|+|...+++.+.++-..|.|..+=-...|+....++++
T Consensus 20 ~~~g~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~~~ 73 (141)
T PRK11014 20 LPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPAST 73 (141)
T ss_pred CCCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecCCHHH
Confidence 344457899999999999999999999999999999887777777666554443
No 244
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=75.92 E-value=36 Score=30.26 Aligned_cols=86 Identities=13% Similarity=0.125 Sum_probs=55.2
Q ss_pred cCChhHHHHHHHHH--HHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEE--ecCCCEEEEcc
Q 014255 325 MDDPFIRNYIEDLL--KNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI--DQVNRLLERGD 400 (428)
Q Consensus 325 ~~D~~l~~~~~~l~--~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~I--Dq~~g~v~~~~ 400 (428)
..||.+...+..+. ..-.. -++..+..-..+|-++||+.+|++..+|-+.|.+|-.+|.+..+- |...|.....|
T Consensus 5 ~~~~~v~~~l~~~~~~~~~~~-~Vl~~L~~~g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r~r~~~~Gr~~y~w 83 (178)
T PRK06266 5 LNNPLVQKVLFEIMEGDEEGF-EVLKALIKKGEVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKREKDEETNWYTYTW 83 (178)
T ss_pred hcCHHHHHHHHHHhcCCccHh-HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEeeeeccCCCcEEEEE
Confidence 46677665444444 11111 223333445679999999999999999999999999999997433 22456666665
Q ss_pred CCccchHHHHH
Q 014255 401 RSKGMKKYTAI 411 (428)
Q Consensus 401 ~~~~~~~~~~l 411 (428)
.-......+.+
T Consensus 84 ~l~~~~i~d~i 94 (178)
T PRK06266 84 KPELEKLPEII 94 (178)
T ss_pred EeCHHHHHHHH
Confidence 43333344433
No 245
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.88 E-value=1.2e+02 Score=32.57 Aligned_cols=218 Identities=8% Similarity=0.088 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHhcC
Q 014255 30 TDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-MDFVSG 106 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i-l~~~~~ 106 (428)
.|++.|...+.+.+..-. +-.+..+.+---+++++.+.+... ++..+.+.+...+. ..-....-.++=+ +.....
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHh
Confidence 468888888888766543 234456777777788888888777 88888887777633 2333333333333 222211
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCC--CCCcchhhhhhHHHH
Q 014255 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE--DGTDDQKKGSQLLEV 184 (428)
Q Consensus 107 ~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~--~~~~d~~~~~~~~e~ 184 (428)
..+ ...+.+.++...+.-...++..+++-..+--+.+++..+...++.+.+++........ ++... ...+.+=.
T Consensus 152 ~~d--~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~--~~qL~~~~ 227 (608)
T PF10345_consen 152 HKD--YNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH--IPQLKALF 227 (608)
T ss_pred ccc--HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC--cHHHHHHH
Confidence 122 3344555555544333234444555555555666777787777777777774433321 11111 11233333
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-------Hhhh---c---c--C--------------C---C----hhhHHHHHHhh
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKA-------LAIK---S---A--I--------------P---H----PRIMGIIRECG 228 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a-------~~~~---~---~--i--------------~---~----p~~~~~i~~~~ 228 (428)
.+..+-.++..|++..++..++.- .+.. + . + + + ..+.+-++..+
T Consensus 228 lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS 307 (608)
T PF10345_consen 228 LLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLS 307 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHH
Confidence 334444556777866665555443 2211 0 0 0 0 0 12345567889
Q ss_pred hHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 229 GKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
|+..++.+....|.++|-++...-+
T Consensus 308 ~l~~~~~~~~~ks~k~~~k~l~~i~ 332 (608)
T PF10345_consen 308 GLHNLYKGSMDKSEKFLEKALKQIE 332 (608)
T ss_pred HHHHhhccCchHHHHHHHHHHHHHH
Confidence 9999999988899999999976543
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=75.62 E-value=6.4 Score=25.83 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=26.3
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
...+|..|...|++++|.+.++++.....
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45899999999999999999999999865
No 247
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=75.61 E-value=10 Score=32.79 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=43.3
Q ss_pred HHHHhhc-cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 345 VLLKLIK-PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 345 ~l~~~~~-pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
+++.+.. +=..++.++||+..++|...+++.+..|...|.|...=-...|..-..++.
T Consensus 13 ~L~~LA~~~~~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~La~~p~ 71 (153)
T PRK11920 13 MLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVRLGRPAA 71 (153)
T ss_pred HHHHHHhCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeeecCCHH
Confidence 3344432 334689999999999999999999999999999987665555555444443
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.56 E-value=78 Score=30.50 Aligned_cols=132 Identities=12% Similarity=0.088 Sum_probs=83.9
Q ss_pred hHHHHHHhhcccCCC-CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHH
Q 014255 16 SRVLCSILEKGLVET-DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (428)
Q Consensus 16 ~~~~~~~~ak~~~~~-~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (428)
+....+++++...+. +..+|...|.......+++ ..+.-.++.+|...|+.+.+...+..+-... ..+.+..
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~ 205 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHG 205 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHH
Confidence 445567777777655 6899999999998877654 4566788999999999999998887764322 1233333
Q ss_pred HHHH--HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 95 KCIN--NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 95 k~v~--~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
... .++......|+ ...+.. . +.... +-. ..-+.||..+...|++++|++.|-.+.+...
T Consensus 206 -l~a~i~ll~qaa~~~~--~~~l~~---~----~aadP-dd~--~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 206 -LQAQIELLEQAAATPE--IQDLQR---R----LAADP-DDV--EAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred -HHHHHHHHHHHhcCCC--HHHHHH---H----HHhCC-CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 111 23444444454 211111 1 11111 111 2234899999999999999988877776643
No 249
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=75.37 E-value=9.7 Score=25.52 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=29.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
...++.+||+.+|++...|-+.+..|...|.+.
T Consensus 14 ~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 14 GPLTVSELAEELGLSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCchhhHHHhccccchHHHHHHHHHHHCcCee
Confidence 668899999999999999999999999999874
No 250
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=75.10 E-value=6.8 Score=34.25 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=42.1
Q ss_pred HHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEec
Q 014255 343 TQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQ 391 (428)
Q Consensus 343 ~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq 391 (428)
.+.|+..++.-.++++++||+.+|+|...|-.-+-+|..+|.|. +.+|.
T Consensus 16 D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~~~~v~p 67 (164)
T PRK11169 16 DRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNP 67 (164)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 34456677778899999999999999999999999999999985 46664
No 251
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=74.84 E-value=5.6 Score=26.21 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=24.3
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHH
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSL 379 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~l 379 (428)
|+..+..-.+.++..||+.+|+++..|-.-+.+|
T Consensus 8 Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 8 ILRLLQEDGRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 3444444589999999999999999988776654
No 252
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=74.72 E-value=6.4 Score=33.95 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=38.6
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEec
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQ 391 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq 391 (428)
|+..++-=.++++++||+.+|+|+..|-.-+-+|..+|.|. +.+|.
T Consensus 14 Il~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~~~~~~v~~ 62 (153)
T PRK11179 14 ILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTRVDVNP 62 (153)
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeEEEEECH
Confidence 34444444899999999999999999999999999999996 46675
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.63 E-value=8.6 Score=23.29 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=24.0
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
+..++|..|...|++++|.+.+++....
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4568999999999999999999988776
No 254
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=74.60 E-value=9.1 Score=27.49 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 337 LLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 337 l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
+++.|+..-...-..|=+.+ +...||+.+|++..-|..-+..|..+|.|.
T Consensus 5 i~~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~ 55 (64)
T PF00392_consen 5 IYDQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIE 55 (64)
T ss_dssp HHHHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEE
Confidence 44444444334445566899 999999999999999999999999999875
No 255
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=74.57 E-value=10 Score=26.37 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=36.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
-..+++.+|++.+|++...+-..|.+|...|.+.-.-+...+...+
T Consensus 8 ~~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~ 53 (66)
T smart00418 8 EGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYSL 53 (66)
T ss_pred cCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEEE
Confidence 3568999999999999999999999999999997554444344433
No 256
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=74.47 E-value=5.4 Score=26.38 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=29.7
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
.++..+||+.+|++...+-+.+.+|...|.+.
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999885
No 257
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=74.21 E-value=5.4 Score=28.82 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=29.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
..-++-.+||+.+|++.-.+..+|..|-.+|+|.
T Consensus 13 ~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~ 46 (62)
T PF04703_consen 13 NGPLKTREIADALGLSIYQARYYLEKLEKEGKVE 46 (62)
T ss_dssp TS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 5668889999999999999999999999999985
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=74.11 E-value=37 Score=35.12 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHH-HHHHhh
Q 014255 150 GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG-IIRECG 228 (428)
Q Consensus 150 g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~-~i~~~~ 228 (428)
++.+.|.++|...+...++ +.+ +.+.++|++...||.++|...++.|....+. -|.+.. .+++ .
T Consensus 247 ~~~~~a~~lL~~~~~~yP~----------s~l--fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~E-l 311 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPN----------SAL--FLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFE-L 311 (468)
T ss_pred CCHHHHHHHHHHHHHhCCC----------cHH--HHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHH-H
Confidence 4567788899988887653 222 4567889999999999999999987532221 133433 3344 3
Q ss_pred hHhHHhhhcHHHHHHHHHHHHH
Q 014255 229 GKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
|..++...||.+|..+|....+
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHh
Confidence 5668889999999999988744
No 259
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=74.10 E-value=11 Score=26.01 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=30.6
Q ss_pred HHHHHhh-ccccccchhhHHhHhCCChHHHHHHHHHHHHcC
Q 014255 344 QVLLKLI-KPYTRIRIPFISKELNVPEKDVEQLLVSLILDN 383 (428)
Q Consensus 344 ~~l~~~~-~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g 383 (428)
..++.++ +.=..|+.++||+.|++|..-|...+..+-..|
T Consensus 3 ~~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 3 KQILKLLLESKEPITAKELAEELGVSRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 3444454 332339999999999999999999999998888
No 260
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.58 E-value=27 Score=36.06 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=40.1
Q ss_pred cCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 014255 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k 95 (428)
++.+||.+|++.|-+.|+.+|++ .+.+-+-+-+|.+.|.+..++.-.+..+++- +...|+++-|
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~D----a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RK 432 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPED----ARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRK 432 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHH
Confidence 34556777777777777666554 5666666667777777777766666666654 4444544444
No 261
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=73.12 E-value=11 Score=32.96 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=40.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
..++.++||+.+++|...+++.+.+|-..|.+...=....|..-..+++
T Consensus 24 ~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p~ 72 (164)
T PRK10857 24 GPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDAS 72 (164)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCHH
Confidence 5799999999999999999999999999999987555666655544443
No 262
>PRK09954 putative kinase; Provisional
Probab=72.53 E-value=8.9 Score=38.03 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEecCCCEEEEc
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQVNRLLERG 399 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq~~g~v~~~ 399 (428)
++++++--.+++.++||+.++++...|...|.+|..+|.|. ..+|+..+++.+.
T Consensus 8 il~~l~~~~~~s~~~la~~l~~s~~~v~~~i~~L~~~g~i~~~~~~l~~~~~v~viG 64 (362)
T PRK09954 8 ILAILRRNPLIQQNEIADILQISRSRVAAHIMDLMRKGRIKGKGYILTEQEYCVVVG 64 (362)
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCcEEEEcCCccEEEEE
Confidence 45555555689999999999999999999999999999985 4778888776654
No 263
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=72.30 E-value=6 Score=29.29 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=38.1
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
.++-++||..+|++...|-+.+.+|..+|.|. ...|.+.+.+++
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~----~~~~~i~I~d~~ 71 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRILKRLKDEGIIE----VKRGKIIILDPE 71 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESSHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE----EcCCEEEECCHH
Confidence 57899999999999999999999999999776 566788887664
No 264
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.24 E-value=18 Score=33.18 Aligned_cols=52 Identities=21% Similarity=0.131 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhcCCCc--cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 32 PEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~--~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
...|++.|.+.++.+.. .+....+.+.-+|.|+++.|++++|..++..++..
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 36899999999887642 22234788888999999999999999999998875
No 265
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=71.94 E-value=8.3 Score=33.26 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=45.5
Q ss_pred HHHHHHhhc--cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 343 TQVLLKLIK--PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 343 ~~~l~~~~~--pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
.++|..+.. ...-++.+.||+..++|+..+++.+.+|-..|.+...=-...|..-..+
T Consensus 11 l~~L~~LA~~~~~~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar~ 70 (150)
T COG1959 11 LRALLYLALLPGGGPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYRLARP 70 (150)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCccCCCC
Confidence 345555543 3347899999999999999999999999999999877666666655544
No 266
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.97 E-value=47 Score=25.80 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=47.3
Q ss_pred HhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 147 ~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...|||.+|.+.|...-..+....+... ........+..+.++...|++++|...++.|..+.....|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~---~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSS---NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchh---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 4579999999999988887654321110 01222334556778889999999999999987776555443
No 267
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=70.85 E-value=32 Score=26.08 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=38.5
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
++.+...-..++|++|.+.+|++...+-..+..+...|-|..+-...++
T Consensus 5 Il~~L~~~~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~ 53 (80)
T PF13601_consen 5 ILALLYANEEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGR 53 (80)
T ss_dssp HHHHHHHHSEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS
T ss_pred HHHHHhhcCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCC
Confidence 3444444578999999999999999999999999999999877766655
No 268
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=70.84 E-value=5.6 Score=29.77 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=30.8
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHHHHcCce
Q 014255 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (428)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i 385 (428)
+.+.-.|..+||+.+|+|+.-|...+..+...|.+
T Consensus 28 R~~eGlS~kEIAe~LGIS~~TVk~~l~~~~~~~~~ 62 (73)
T TIGR03879 28 REEAGKTASEIAEELGRTEQTVRNHLKGETKAGGL 62 (73)
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHhcCcccchH
Confidence 55688899999999999999999999988877764
No 269
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=70.68 E-value=10 Score=36.55 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=27.9
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
-.|.++...|++++|++++.+. ..+|..+..+++++.++.+.-|+..+....
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~-----------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG-----------------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT-----------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc-----------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666554321 113555556666666666666665555443
No 270
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=70.39 E-value=8.9 Score=32.75 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=38.3
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEec
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQ 391 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq 391 (428)
+++++-=.++++..||+.+|+|+..+-.-+-+|..+|.|. +.+|.
T Consensus 14 L~~L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~~~~~v~~ 61 (154)
T COG1522 14 LRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEEGVIKGYTAVLDP 61 (154)
T ss_pred HHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCceeeEEEEECH
Confidence 4455555669999999999999999999999999999985 57776
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=70.39 E-value=10 Score=24.77 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~ 87 (428)
+...++..|...|+++++.+.|+..++.. |.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC
Confidence 45778999999999999999999999976 54
No 272
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=70.35 E-value=83 Score=28.40 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=71.6
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
.++||.-..+.|++.||...+++...-... +|+ .+.+-.++..+.+++...|...+++-.......-.|
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA----~d~-------a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFA----HDA-------AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccC----CCH-------HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 348999999999999999999988776553 242 345566778889999999999988765443332122
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
.-+ +.-|+.+...|.|.+|.+.|-.+...|
T Consensus 161 d~~----Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 161 DGH----LLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred Cch----HHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 211 223667777889999999998887766
No 273
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=70.21 E-value=18 Score=33.72 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=33.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~I 389 (428)
.+++-..||+.+|++...+-.-+.++-..|.|.++=
T Consensus 197 grlse~eLAerlGVSRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 197 GLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred ccccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 399999999999999999999999999999998764
No 274
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=70.17 E-value=7.3 Score=27.88 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=31.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
-.++..+||+.+|++...|.+.+.+|...|.|..
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3589999999999999999999999999998864
No 275
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=69.97 E-value=17 Score=34.80 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=51.8
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
+...||.|. ..+..++.+.|.+.+..++.+ .+++..++.-++.+|+|.++....+.++...
T Consensus 197 aeaL~~~a~---~~~ta~a~~ll~~al~~D~~~----iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 197 AEALYYQAG---QQMTAKARALLRQALALDPAN----IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHhcC---CcccHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 456677774 344588999999999998765 7899999999999999999999999999987
No 276
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.86 E-value=7 Score=22.55 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.3
Q ss_pred hHHHHHHHHhhccHHHHHHHHH
Q 014255 139 NLKLCKIWFDMGEYGRMSKILK 160 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~ 160 (428)
...||..+...|++++|...+.
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4589999999999999998775
No 277
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=68.76 E-value=15 Score=26.19 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=33.3
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
..+.+.=..|+..+||+.+|+++.-|-..+-+|-..|.+.
T Consensus 14 y~l~~~~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 14 YELSEEGGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp HHHHHCTSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 3334455789999999999999999999999999999875
No 278
>PRK10870 transcriptional repressor MprA; Provisional
Probab=68.42 E-value=59 Score=28.67 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=38.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v 396 (428)
..++..+||+.++++..-+-..|-+|...|.|.=.-|..++.+
T Consensus 70 ~~it~~eLa~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~ 112 (176)
T PRK10870 70 HSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRC 112 (176)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCe
Confidence 4688899999999999999999999999999998888887644
No 279
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=68.39 E-value=13 Score=25.38 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=32.2
Q ss_pred HHHhhcc-ccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 346 LLKLIKP-YTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 346 l~~~~~p-Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
++.++.. =..+++.+||+.+|+|..-+-+.+..|...|-+.
T Consensus 8 iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 8 ILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp HHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCee
Confidence 3444433 3458999999999999999999999999998763
No 280
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=68.33 E-value=15 Score=26.07 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=34.2
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
++.+..-...++..||+.+|++...+-..|..|...|.|..
T Consensus 16 l~~L~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~ 56 (61)
T PF12840_consen 16 LRLLASNGPMTVSELAEELGISQSTVSYHLKKLEEAGLIEV 56 (61)
T ss_dssp HHHHHHCSTBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEE
Confidence 33335567889999999999999999999999999999865
No 281
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=67.71 E-value=21 Score=29.63 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=36.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (428)
..++.++||+.+++|...+.+.+..|...|.|...-....|..-
T Consensus 24 ~~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy~l 67 (132)
T TIGR00738 24 GPVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGYRL 67 (132)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCccC
Confidence 37999999999999999999999999999998764334345443
No 282
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=67.68 E-value=26 Score=25.00 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=33.9
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
.....++..+||+.++++...+-..|-+|+..|.|.=.-|..++
T Consensus 14 ~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~ 57 (68)
T PF13463_consen 14 HSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDK 57 (68)
T ss_dssp --TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCT
T ss_pred ccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcC
Confidence 37789999999999999999999999999999999655555444
No 283
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=67.64 E-value=40 Score=27.35 Aligned_cols=50 Identities=6% Similarity=0.089 Sum_probs=41.7
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEccC
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~~ 401 (428)
....++.++||+.++++...+-..|-+|...|.|...-|..++ .|..++.
T Consensus 39 ~~~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~ 91 (118)
T TIGR02337 39 EQGSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPK 91 (118)
T ss_pred HcCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHh
Confidence 3457899999999999999999999999999999988877665 4555543
No 284
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=67.33 E-value=8.7 Score=22.41 Aligned_cols=26 Identities=19% Similarity=0.572 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014255 57 LKQTVKLYYRLGKYKEMMDAYREMLT 82 (428)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (428)
+..++..|.+.|+++++.+.+..+..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 56788999999999999999988765
No 285
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=66.95 E-value=34 Score=31.42 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=47.6
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
+....-...||.++||+.++++..-+-+.|.+|-..|.|.-..|.....|.+++..
T Consensus 13 lg~l~~~~~IS~~eLA~~L~iS~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG 68 (217)
T PRK14165 13 LGAVNNTVKISSSEFANHTGTSSKTAARILKQLEDEGYITRTIVPRGQLITITEKG 68 (217)
T ss_pred HhccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHH
Confidence 33444456899999999999999999999999999999999998877788887654
No 286
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=66.55 E-value=1.1e+02 Score=28.54 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHH
Q 014255 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKD 371 (428)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~ 371 (428)
|-+.+...|-+.+-.|.+.+...+.+. ..+|.+....+-|...||.-.=.-+=++|..|+++..++++.++.++
T Consensus 135 ~~I~~~v~LEq~~MEGaYnKv~~a~~s-----~p~~~y~~FmdIl~~tiRdEIA~c~EKsYd~l~~s~a~~~L~f~~~~ 208 (260)
T KOG3151|consen 135 PYISHPVSLEQSLMEGAYNKVLSAKQS-----IPSEEYTYFMDILLDTIRDEIAGCIEKSYDKLSASDATQMLLFNNDK 208 (260)
T ss_pred chhhhHHHHHHHHHhhHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcCChH
Confidence 566677788888888887776665554 23677777788888888866555556789999999999999997443
No 287
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.52 E-value=14 Score=24.64 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 59 QTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
.+++.|.+.|+.+.+.+.++.++.-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 5788999999999999999988854
No 288
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.44 E-value=89 Score=32.32 Aligned_cols=183 Identities=11% Similarity=0.092 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh-----
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK----- 130 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~----- 130 (428)
..++-+.+++....+..+++.-..+..+.++.-.+...........-.+.... .+....+....-+.+....
T Consensus 102 ~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q---~e~al~~l~vL~~~~~~~~~~~~g 178 (696)
T KOG2471|consen 102 MDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQ---CEEALDYLNVLAEIEAEKRMKLVG 178 (696)
T ss_pred HhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhccccc
Confidence 34445667788888888998888888887554444444444433333333211 1122223333222222100
Q ss_pred ----------------hhhHHH------HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 131 ----------------NERLWF------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 131 ----------------~~kl~l------r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
.++-++ .+..-.+.+|+...++..+. .+++......+++ -...++.
T Consensus 179 n~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~k---revK~vmn~a~~s---------~~~l~LK 246 (696)
T KOG2471|consen 179 NHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAK---REVKHVMNIAQDS---------SMALLLK 246 (696)
T ss_pred cccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHH---HhhhhhhhhcCCC---------cHHHHHH
Confidence 011111 11112233344444444333 3333333222211 2455677
Q ss_pred HHHHHhhcCHHHHHHHHHHHHh--hhccCCChhhH-HHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 189 IQMYTETKNNKKLKQLYQKALA--IKSAIPHPRIM-GIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~--~~~~i~~p~~~-~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
++.++..||+++|-..+..+.. -....-.|... +.++--.|.+|..-+.|.-+..+|..+..+++
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 8999999999998877765421 00111124433 34445668889999999999999999987554
No 289
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=64.85 E-value=1.6e+02 Score=29.55 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=30.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
+-||.+++..+.|.+|.+.++...+.-+ + .+-+..-+..+..+|+..+|.+..+.+.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~------s-------~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRP------S-------ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCC------C-------hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3566666666666666666664443311 0 1222333455566666666666665554
No 290
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=64.67 E-value=27 Score=31.13 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHhh
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG----KYKEMMDAYREMLTYIKS 86 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~----~~~~l~e~~~~l~~~~~~ 86 (428)
+++|+..|++.+..+|++ -.++-.++..|...+ +..++.++|.+-..+|+.
T Consensus 51 iedAisK~eeAL~I~P~~----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNK----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 588999999999998864 466777777666544 455666777777776633
No 291
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=64.64 E-value=2.2e+02 Score=31.12 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=32.9
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
-.|..+...+.-++|...|.|..+.+. +...++-.-.+.+...|+..+|++.|..|..+
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~------------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDP------------LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcch------------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 344455555555566666666655532 22333444445566667777777777766544
No 292
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.59 E-value=1.8e+02 Score=30.12 Aligned_cols=166 Identities=16% Similarity=0.238 Sum_probs=98.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH--hcCCCCCChhHHHHHHHHHHHHHHHhhhhh-HHHH
Q 014255 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF--VSGSASQNFSLLREFYQTTLKALEEAKNER-LWFK 137 (428)
Q Consensus 61 ~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~--~~~~~~~~~~~~~~~~~~~le~l~~~~~~k-l~lr 137 (428)
+.+--..|+.+...+.|..-+.-.-+...|.+...-|=-=+++ +.+.--.+.+...++|..|++.| +.++ .|.+
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI---PHkkFtFaK 405 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI---PHKKFTFAK 405 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc---CcccchHHH
Confidence 4556667888888888888776653334444444444333333 11111123555677888887743 3344 4558
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
+-+..|++...+.++..|.++|-..-..|++ ++ .. .-| +.+-+.++++.+++.+|.+=....
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-----~K---lF--k~Y---IelElqL~efDRcRkLYEkfle~~----- 467 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPK-----DK---LF--KGY---IELELQLREFDRCRKLYEKFLEFS----- 467 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCc-----hh---HH--HHH---HHHHHHHhhHHHHHHHHHHHHhcC-----
Confidence 8889999999999999999999999888874 32 12 222 234556788888888887654321
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
|.- ...+.--|.+-...||...|..-|--|
T Consensus 468 Pe~-c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 468 PEN-CYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred hHh-hHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 210 111111133333455666666555554
No 293
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=64.53 E-value=28 Score=24.98 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 331 RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 331 ~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
..|...+..++ ...+-.+-+.++..|.+..++|.+.|.+-++-||.-|.+.
T Consensus 8 ~~~fG~~~~~V-----~~~Ll~~G~ltl~~i~~~t~l~~~~Vk~~L~~LiQh~~v~ 58 (62)
T PF08221_consen 8 EEHFGEIVAKV-----GEVLLSRGRLTLREIVRRTGLSPKQVKKALVVLIQHNLVQ 58 (62)
T ss_dssp HHHHHHHHHHH-----HHHHHHC-SEEHHHHHHHHT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHcChHHHHH-----HHHHHHcCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCee
Confidence 34445544444 3344456789999999999999999999999999988764
No 294
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=64.46 E-value=28 Score=33.26 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=36.8
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecC
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~ 392 (428)
--..|+++++|+.+++|.+.+-..+......+.|+|++|..
T Consensus 127 e~G~vsi~eLa~~~~Lp~efl~~~li~~~lg~~I~g~~d~~ 167 (272)
T PF09743_consen 127 ESGQVSISELAKQYDLPSEFLKEELISKRLGKIIKGRLDGD 167 (272)
T ss_pred HcCeEeHHHHHHhcCCcHHHHHHHHhhhhcCcceeEEEeCC
Confidence 34789999999999999999997777778888999999988
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.42 E-value=35 Score=23.71 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
++..++--+++.|+|+++.++...++..-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 56778889999999999999999999864
No 296
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.38 E-value=1.5e+02 Score=29.10 Aligned_cols=127 Identities=13% Similarity=0.176 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhcCCCcc-ch-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHhcCCCC
Q 014255 33 EGALAGFAEVVAMEPEK-AE-WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-MDFVSGSAS 109 (428)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~-~~-~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i-l~~~~~~~~ 109 (428)
++-|+.+.+.+++.+++ ++ ....+....+..|++.||-+.+.+.+....... -. ...+.+-....+ +..+- .|
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~kt-vs-~g~kiDVvf~~iRlglfy--~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKT-VS-LGHKIDVVFYKIRLGLFY--LD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-hh-cccchhhHHHHHHHHHhh--cc
Confidence 34455666655554432 22 367788889999999999999999998887754 11 222222222211 11111 12
Q ss_pred CChhHHHHHHHHHHHHHHHhh--hhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 110 QNFSLLREFYQTTLKALEEAK--NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~--~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
.....+.++.+...++.-+ +-|..+|+ --|-......++.+|+.++-+...-++
T Consensus 157 --~~lV~~~iekak~liE~GgDWeRrNRlKv--Y~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 157 --HDLVTESIEKAKSLIEEGGDWERRNRLKV--YQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred --HHHHHHHHHHHHHHHHhCCChhhhhhHHH--HHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 5567777888777776321 33444454 334444567899999998888876654
No 297
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.26 E-value=22 Score=33.56 Aligned_cols=65 Identities=22% Similarity=0.133 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (428)
.++|++.|...|..+++..|+ ..|.-.++-.++.+....|+.+++..++.++.+.. |.-..+..+
T Consensus 190 ~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y-P~t~aA~~A 254 (262)
T COG1729 190 AQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY-PGTDAAKLA 254 (262)
T ss_pred hcccchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 467899999999999887664 34456889999999999999999999999999988 654444333
No 298
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=63.91 E-value=12 Score=35.43 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCce
Q 014255 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (428)
Q Consensus 342 ~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i 385 (428)
|...|+.+++...+|+++++|+.|++|+.-|.+-|..|-..|.|
T Consensus 6 R~~~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l 49 (256)
T PRK10434 6 RQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTV 49 (256)
T ss_pred HHHHHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 67788889999999999999999999999999999999999976
No 299
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=63.85 E-value=18 Score=21.53 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (428)
.+..++..|.+.|+++.+.+++..+..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467789999999999999999988875
No 300
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=63.53 E-value=9.5 Score=31.78 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=36.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (428)
..++..+||+.+++|...|.+.+..|...|.|.+.-....|...
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g~~ggy~l 67 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRGVEGGYTL 67 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCCCCCChhh
Confidence 57999999999999999999999999999999765433334333
No 301
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=63.41 E-value=2.7e+02 Score=31.65 Aligned_cols=196 Identities=11% Similarity=0.131 Sum_probs=119.4
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 014255 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (428)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (428)
+...++.|......+...|+..|-+.+..++. -..+.-.+|.+|++--+...+...|.+-..+- .. - +..
T Consensus 459 e~~~~w~a~~~~rK~~~~al~ali~alrld~~----~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-at--d---aea 528 (1238)
T KOG1127|consen 459 ENSEFWVALGCMRKNSALALHALIRALRLDVS----LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-AT--D---AEA 528 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ch--h---hhh
Confidence 44567888888888899999999999888754 25677889999988877777777777665543 21 1 112
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh---hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCc
Q 014255 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN---ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD 173 (428)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~---~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~ 173 (428)
-..+.+.+.+.|+ .+.... .++..-+.+.. +-.|.+ .|-.|++.|+...|..-.+.-...
T Consensus 529 aaa~adtyae~~~--we~a~~---I~l~~~qka~a~~~k~nW~~----rG~yyLea~n~h~aV~~fQsALR~-------- 591 (1238)
T KOG1127|consen 529 AAASADTYAEEST--WEEAFE---ICLRAAQKAPAFACKENWVQ----RGPYYLEAHNLHGAVCEFQSALRT-------- 591 (1238)
T ss_pred HHHHHHHhhcccc--HHHHHH---HHHHHhhhchHHHHHhhhhh----ccccccCccchhhHHHHHHHHhcC--------
Confidence 2223444544344 322222 23333222211 112333 677788888888776555544433
Q ss_pred chhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh-hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 174 DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 174 d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p-~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
|+ --++...-.+..|.+.|-+..|-...++|.-+ +| ..-++++. +.+....|+|+.|..-+-+...
T Consensus 592 dP----kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-----rP~s~y~~fk~--A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 592 DP----KDYNLWLGLGEAYPESGRYSHALKVFTKASLL-----RPLSKYGRFKE--AVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Cc----hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-----CcHhHHHHHHH--HHHHHHhhhHHHHHHHHHHHHH
Confidence 11 12456666778888999888887777776432 33 23444444 4556667788887777666543
No 302
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=63.14 E-value=1.8e+02 Score=29.55 Aligned_cols=182 Identities=11% Similarity=0.064 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHhcCCCCC---ChhHHHHHHHHHHHHH
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR---NYSEKCINNIMDFVSGSASQ---NFSLLREFYQTTLKAL 126 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k---~~~~k~v~~il~~~~~~~~~---~~~~~~~~~~~~le~l 126 (428)
..-.+..++++++-.|||+.+..+|..+.+.++....- +.+.+++-..+= +...+.. ..+.....++.+...-
T Consensus 207 ~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~-~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 207 PEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLL-MQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHH-hcCCCCccccccccHHHHHHHHHHHH
Confidence 44567779999999999999999999999998332222 222333321111 1111100 1122334444443332
Q ss_pred HHh-----hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHH--hhcCHH
Q 014255 127 EEA-----KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT--ETKNNK 199 (428)
Q Consensus 127 ~~~-----~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~--~~~d~~ 199 (428)
..+ +....-+|+.+-.+.++...|.|.+|...+-.....+-. .+- ..+-.-++++++-.++ ...+.+
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l--~~~~~alllE~~a~~~~~~~~~~~ 359 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDL--RPFGSALLLEQAAYCYASLRSNRP 359 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhh--hhHhhHHHHHHHHHhhcccccCCC
Confidence 221 111234488888999999999998887666555544210 010 0000233344333333 111000
Q ss_pred -HHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 200 -KLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 200 -ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
.. ...-+-.+-.....|.-+...+....|.++|..+...|..
T Consensus 360 ~~~-------------~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 360 SPG-------------LTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred Ccc-------------chhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 00 0001222333456777888888999999999999877753
No 303
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.47 E-value=1.7e+02 Score=29.11 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=10.6
Q ss_pred CEEEEccCCccchHHHHHHHHHH
Q 014255 394 RLLERGDRSKGMKKYTAIDKWNS 416 (428)
Q Consensus 394 g~v~~~~~~~~~~~~~~l~~w~~ 416 (428)
++|.+...+|...|-..+..|.+
T Consensus 529 hllr~~~nsq~E~mikvvrkwa~ 551 (557)
T KOG3785|consen 529 HLLRMKPNSQCEFMIKVVRKWAE 551 (557)
T ss_pred HHHHhCCCchHHHHHHHHHHHHH
Confidence 33444444444444455555543
No 304
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=62.34 E-value=2.8e+02 Score=31.51 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=46.0
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
+.|-+..+.|+|.+|...+..+-..... +..--.-+.|.++..+..+...|=..++..++.++.
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~-----e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSL-----ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 5566777889999999888777655332 111013468888888888888888888888888773
No 305
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.12 E-value=1.6e+02 Score=28.54 Aligned_cols=128 Identities=11% Similarity=0.159 Sum_probs=79.8
Q ss_pred HHHHHHH-HHhhcCCCccc-hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHhcCCCC
Q 014255 33 EGALAGF-AEVVAMEPEKA-EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-MDFVSGSAS 109 (428)
Q Consensus 33 ~~Ai~~~-~~ii~~~~~~~-~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i-l~~~~~~~~ 109 (428)
++-|+.| ++|-+.+++++ ..+..+-.+++..|++.++.+...++...+...- .....++.-++..+ +..+-. +
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a--~stg~KiDv~l~kiRlg~~y~--d 167 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDA--MSTGLKIDVFLCKIRLGLIYG--D 167 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhcccchhhHHHHHHHHHhhc--c
Confidence 3455556 34433444443 3478899999999999999999999998887763 23445555555444 222221 2
Q ss_pred CChhHHHHHHHHHHHHHHHhh--hhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccC
Q 014255 110 QNFSLLREFYQTTLKALEEAK--NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~--~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~ 168 (428)
...+.+.++.+-..++.-+ +.|...++ -.|-+.....++.+|..++.+...-+..
T Consensus 168 --~~vV~e~lE~~~~~iEkGgDWeRrNRyK~--Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 168 --RKVVEESLEVADDIIEKGGDWERRNRYKV--YKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred --HHHHHHHHHHHHHHHHhCCCHHhhhhHHH--HHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 4455566666555555311 22233333 3455666778999999999999877653
No 306
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=61.78 E-value=14 Score=34.43 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=40.2
Q ss_pred HHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 342 ~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
|...++.+++....++.++||+.|++++.-+.+.|..|-..|++.
T Consensus 5 R~~~Il~~l~~~~~~~~~eLa~~l~VS~~TiRRdL~~L~~~~~l~ 49 (240)
T PRK10411 5 RQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKIL 49 (240)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 566678888888999999999999999999999999999988874
No 307
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=61.65 E-value=17 Score=21.52 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (428)
++..++..|.+.|+++++.+++..+..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356788999999999999999988865
No 308
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=61.28 E-value=19 Score=23.66 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=27.1
Q ss_pred cchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 356 I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
++++++|+.+|++...+.. ++.+|.|.+... .+...+
T Consensus 2 lt~~e~a~~lgis~~ti~~----~~~~g~i~~~~~--g~~~~~ 38 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTVYR----LIHEGELPAYRV--GRHYRI 38 (49)
T ss_pred CCHHHHHHHHCCCHHHHHH----HHHcCCCCeEEe--CCeEEE
Confidence 5789999999999877665 457899987543 344444
No 309
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=61.08 E-value=71 Score=24.35 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=34.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~ 393 (428)
..++.++||+.++++...+-..|.+|...|.|.-.-|..+
T Consensus 23 ~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~ 62 (101)
T smart00347 23 GPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPED 62 (101)
T ss_pred CCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCC
Confidence 3689999999999999999999999999999976655443
No 310
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=60.67 E-value=34 Score=34.92 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=49.8
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
...++|..|...|+|++|...+++....-.+ + ...-..+...+..|..+|++++|.+.+++|...
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-----~----aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPN-----P----DEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----c----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3458999999999999999999998877432 1 000123456667889999999999999999765
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.41 E-value=88 Score=34.40 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~ 87 (428)
+.-|+..-++- ..+.+.......+-|..++..|++++|..+|.+.++..++.
T Consensus 350 y~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 350 YKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred HHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 45555543332 22344455667777999999999999999999998887553
No 312
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=60.06 E-value=1.9e+02 Score=31.39 Aligned_cols=158 Identities=8% Similarity=0.074 Sum_probs=87.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCC-------ChhHHHHHHHHHHHHHHHhhh
Q 014255 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ-------NFSLLREFYQTTLKALEEAKN 131 (428)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~-------~~~~~~~~~~~~le~l~~~~~ 131 (428)
.+..++-+.++|+..+.+|..+- ...+++.++++.++ .+ |+. +.-.-..+|+.+.|.-+.
T Consensus 416 sAl~I~Erlemw~~vi~CY~~lg-------~~~kaeei~~q~le--k~-~d~~lyc~LGDv~~d~s~yEkawElsn~--- 482 (777)
T KOG1128|consen 416 SALVIFERLEMWDPVILCYLLLG-------QHGKAEEINRQELE--KD-PDPRLYCLLGDVLHDPSLYEKAWELSNY--- 482 (777)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhc-------ccchHHHHHHHHhc--CC-CcchhHHHhhhhccChHHHHHHHHHhhh---
Confidence 34456666666666666665442 34556777777766 11 221 000012345555443222
Q ss_pred hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 132 ~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
+-.|-..-+|...+..++|.+|.+.++.-... . ....+.+..-.-.++..+++..|..++..+.+.
T Consensus 483 --~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------n----plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 483 --ISARAQRSLALLILSNKDFSEADKHLERSLEI--------N----PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred --hhHHHHHhhccccccchhHHHHHHHHHHHhhc--------C----ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 11133345666667789999998888776555 1 345667777667778888888888888877544
Q ss_pred hccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHH
Q 014255 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (428)
Q Consensus 212 ~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (428)
...-.. ..+. -...|+..++=++|+..+-|+.
T Consensus 549 ~Pd~~e-aWnN-----ls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 549 EPDNAE-AWNN-----LSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred CCCchh-hhhh-----hhHHHHHHhhhHHHHHHHHHHh
Confidence 221100 0000 0123444556667777777774
No 313
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=60.06 E-value=2.6e+02 Score=30.53 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 182 ~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
..+.+..+.++...++-..+...+.+|.++- ...+..+...|..+...|++.+|...|..+..
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 4556666777888888888887777776542 23455667789999999999999999999853
No 314
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=59.55 E-value=23 Score=27.04 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=39.0
Q ss_pred HHHHhhccc-cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 345 VLLKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 345 ~l~~~~~pY-s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
.++.++... ..+++.+||+.+|+|...|-+.+..|...|.|... ..+|...+
T Consensus 9 ~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~--~~~~~y~l 61 (91)
T smart00346 9 AVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQD--GQNGRYRL 61 (91)
T ss_pred HHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeec--CCCCceee
Confidence 344444333 47999999999999999999999999999998652 23454444
No 315
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=59.53 E-value=20 Score=29.39 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=36.2
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEE
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~I 389 (428)
.|+.++.. ..|..+||..+++|..-+.-+++.|+..|.+..+-
T Consensus 47 ~Il~lC~~--~~SVAEiAA~L~lPlgVvrVLvsDL~~~G~v~v~~ 89 (114)
T PF05331_consen 47 AILELCRR--PLSVAEIAARLGLPLGVVRVLVSDLADAGLVRVRA 89 (114)
T ss_pred HHHHHHCC--CccHHHHHHhhCCCchhhhhhHHHHHhCCCEEEeC
Confidence 34555555 78999999999999999999999999999986543
No 316
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=59.25 E-value=23 Score=25.72 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=26.9
Q ss_pred ccchhhHHhHhCCC-hHHHHHHHHHHHHcCcee
Q 014255 355 RIRIPFISKELNVP-EKDVEQLLVSLILDNRID 386 (428)
Q Consensus 355 ~I~l~~iA~~l~l~-~~~vE~~l~~lI~~g~i~ 386 (428)
.-|+.+||+.+|+. ..-|-..|..|...|.|.
T Consensus 25 ~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 25 PPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp ---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 35999999999996 999999999999998874
No 317
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=59.22 E-value=49 Score=29.89 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=36.8
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEE
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ 388 (428)
.++.++.....++..+||+.+|++..-|-..|.+|...|.|.-.
T Consensus 5 ~IL~~L~~~~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~ 48 (203)
T TIGR02702 5 DILSYLLKQGQATAAALAEALAISPQAVRRHLKDLETEGLIEYE 48 (203)
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEe
Confidence 34444444466999999999999999999999999999999755
No 318
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=59.14 E-value=2.3e+02 Score=29.51 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=84.3
Q ss_pred cccchhhHHHHHHhhcccCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 014255 10 SDEFTVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (428)
Q Consensus 10 ~~~~~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~ 89 (428)
.|....+...++ ++-.+.|++.-|+.=++.++.+++- ..++.-++.= ......++.++|++-++.-|....
T Consensus 165 ~D~~r~Aq~IMq---~AWRERnp~aRIkaA~eALei~pdC----AdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg 235 (539)
T PF04184_consen 165 TDALRPAQEIMQ---KAWRERNPQARIKAAKEALEINPDC----ADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG 235 (539)
T ss_pred CCccCHHHHHHH---HHHhcCCHHHHHHHHHHHHHhhhhh----hHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc
Confidence 444545555555 5566778888888888888876531 2222222210 122345666666665554322111
Q ss_pred hhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCC
Q 014255 90 RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (428)
Q Consensus 90 k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~ 169 (428)
+.... .+.+ .+.+.. .. .+-+.+..+..+||....+.|..+||.+.++++.++....
T Consensus 236 ~s~~~-----------~~~g-------~~~e~~----~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~ 292 (539)
T PF04184_consen 236 KSQFL-----------QHHG-------HFWEAW----HR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL 292 (539)
T ss_pred hhhhh-----------hccc-------chhhhh----hc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc
Confidence 10000 0011 111111 10 1223444555689999999999999999999999886421
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 014255 170 DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (428)
Q Consensus 170 ~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~ 207 (428)
| ...++-..+..++.++.+..++.++.+
T Consensus 293 ----~------~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 293 ----D------NLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred ----c------hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 223333334566677777777666544
No 319
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=58.71 E-value=20 Score=25.95 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=33.9
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEE
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~I 389 (428)
.....+..+||+.+|+|...|-..|.+|...|.+.-.-
T Consensus 19 ~~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 19 KNGPATAEEIAEELGISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 45678999999999999999999999999999986544
No 320
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=58.51 E-value=53 Score=24.60 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=34.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
....++.+|+...+++...+...|-.++..|.| ...++...+++.
T Consensus 17 ~~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI----~~~~~~Y~lTek 61 (77)
T PF14947_consen 17 KGGAKKTEIMYKANLNYSTLKKYLKELEEKGLI----KKKDGKYRLTEK 61 (77)
T ss_dssp TT-B-HHHHHTTST--HHHHHHHHHHHHHTTSE----EEETTEEEE-HH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCe----eCCCCEEEECcc
Confidence 577789999999999999999999999999999 336777777754
No 321
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=58.50 E-value=2.5e+02 Score=29.67 Aligned_cols=166 Identities=12% Similarity=0.118 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
...+-.-++.++..+++.+-.++...++... |--++-....+- -.+.. .+. .+++.+....++.-++.-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia----~l~el-~~~-----n~Lf~lsh~LV~~yP~~a 312 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIA----CLYEL-GKS-----NKLFLLSHKLVDLYPSKA 312 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHH----HHHHh-ccc-----chHHHHHHHHHHhCCCCC
Confidence 4555566788889999998888888888876 543333322222 11111 111 245555555555433333
Q ss_pred -HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 134 -LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 134 -l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
-|+ -+|-.|+-.|++.+|.+++.+.-.. |++ --.-.+.-...+...|...+|-+.|..|-++.
T Consensus 313 ~sW~----aVg~YYl~i~k~seARry~SKat~l--------D~~----fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 313 LSWF----AVGCYYLMIGKYSEARRYFSKATTL--------DPT----FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred cchh----hHHHHHHHhcCcHHHHHHHHHHhhc--------Ccc----ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 344 3466788889999998888776443 321 12333444556777788888888888876665
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
.+..-|. ++-|.-|+..++++-|-+.|.+|+.-+
T Consensus 377 ~G~hlP~------LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 377 PGCHLPS------LYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred cCCcchH------HHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 5544454 234666677789999999999986544
No 322
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=58.48 E-value=37 Score=26.63 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=39.2
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
.--.++-.+||+.+|++.+-|-+.|.+|...|.|. .+...|.+-+..
T Consensus 44 ~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~--r~~~~~~~~~n~ 90 (95)
T TIGR01610 44 KQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIF--RQGMMGIVGVNT 90 (95)
T ss_pred cCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCee--eecCCceeecCC
Confidence 34688899999999999999999999999999996 345567776653
No 323
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.43 E-value=3e+02 Score=31.46 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=21.4
Q ss_pred HHhhcccCCCC-HHHHHHHHHHhhcCCC
Q 014255 21 SILEKGLVETD-PEGALAGFAEVVAMEP 47 (428)
Q Consensus 21 ~~~ak~~~~~~-~~~Ai~~~~~ii~~~~ 47 (428)
..+.|+++..| |.+-|+++++|+-.++
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIvL~~S 1015 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIVLDNS 1015 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcCCc
Confidence 44567788887 8999999999987654
No 324
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=58.00 E-value=96 Score=33.36 Aligned_cols=126 Identities=15% Similarity=0.256 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCC-
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ- 110 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~- 110 (428)
....|+...+++....+. +...+++.+++.-+-..|++++++.+|...-.+ ..+-.+++..+...-..++.
T Consensus 393 ~~G~i~~~~~Li~~~~~~-~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~-------d~vl~lln~~Ls~~l~~~~~~ 464 (613)
T PF04097_consen 393 TPGLIERRLSLIKFDDDE-DFLREIIEQAAREAEERGRFEDAILLYHLAEEY-------DKVLSLLNRLLSQVLSQPSSS 464 (613)
T ss_dssp EE-HHHHTGGGGT-SSSS-HHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-H-------HHHHHHHHHHHHHHHHCSSTS
T ss_pred ccceeeccccccCCCCcH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHcCcccc
Confidence 345566655555544322 234778888899999999999999988755433 22334444444432221221
Q ss_pred --ChhHHHHHHHHHHHHHHHh-----------hhhhHHHHHhHHHHHH--HHhhccHHHHHHHHHHHHhh
Q 014255 111 --NFSLLREFYQTTLKALEEA-----------KNERLWFKTNLKLCKI--WFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 111 --~~~~~~~~~~~~le~l~~~-----------~~~kl~lr~~~~La~l--~~~~g~~~~A~~~l~el~~~ 165 (428)
........+..+.+..+.- ...+-.+.+.++++.+ ++..|+|+.|++.++++.-.
T Consensus 465 ~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~li 534 (613)
T PF04097_consen 465 SLSDSERERLIELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLI 534 (613)
T ss_dssp SSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S
T ss_pred ccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 1111222333332222211 1112334666677777 55789999999999998744
No 325
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.89 E-value=1.1e+02 Score=25.39 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHh---hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 112 FSLLREFYQTTLKALEEA---KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 112 ~~~~~~~~~~~le~l~~~---~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
.+.+..+++.|...+... .|+..++++-++.|.+.- ++.+++..+...-. +.....+|..=
T Consensus 42 ~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~I----------G~~~A~fY~~w 105 (126)
T PF08311_consen 42 QSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGI----------GTKLALFYEEW 105 (126)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTT----------STTBHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCc----------cHHHHHHHHHH
Confidence 334556666666665442 344556666555555322 77778887776522 23356778888
Q ss_pred HHHHHhhcCHHHHHHHHHHH
Q 014255 189 IQMYTETKNNKKLKQLYQKA 208 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a 208 (428)
+.++...|++.+|.+.|..+
T Consensus 106 A~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 106 AEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhh
Confidence 88999999999999998765
No 326
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=57.54 E-value=1.3e+02 Score=30.96 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=66.1
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~ 220 (428)
-.|.-++..|++++|.+.|.++.+..++ + .. +....+.++...|..++|.+.++++.... |.-
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~-----N----~~---~~~~~~~i~~~~nk~~~A~e~~~kal~l~-----P~~ 373 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPD-----N----PY---YLELAGDILLEANKAKEAIERLKKALALD-----PNS 373 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCC-----C----HH---HHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCc
Confidence 4555678889999999999999888652 2 22 23345578899999999999998886542 211
Q ss_pred HHHHHHhhhHhHHhhhcHHHHHHHHHHHH
Q 014255 221 MGIIRECGGKMHMAERQWADAATDFFEAF 249 (428)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (428)
..++..-|..++..|++.+|...+-...
T Consensus 374 -~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 374 -PLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred -cHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 2344555788888899998888877763
No 327
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=57.32 E-value=19 Score=33.82 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=40.3
Q ss_pred HHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 342 ~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
|...++.+++....++.++||+.||++..-+.+.|.+|-..|.|.
T Consensus 6 R~~~Il~~l~~~~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~ 50 (251)
T PRK13509 6 RHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLK 50 (251)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 555678888888999999999999999999999999998888874
No 328
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=57.29 E-value=18 Score=34.06 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=41.4
Q ss_pred HHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 341 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 341 i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
-|...|+.+++....++..+||+.|++|+.-+-+.|..|-..|.+.
T Consensus 5 ~R~~~Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~ 50 (252)
T PRK10906 5 QRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKIL 50 (252)
T ss_pred HHHHHHHHHHHHcCCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3666788888888999999999999999999999999999999873
No 329
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=57.11 E-value=12 Score=33.43 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=39.9
Q ss_pred HHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCce
Q 014255 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (428)
Q Consensus 342 ~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i 385 (428)
|...|+.++.-...+++.++|+.||+|..-+.+-|..|-.+|++
T Consensus 8 R~~~Il~~l~~~~~~~~~~La~~~~vS~~TiRRDl~~L~~~g~~ 51 (185)
T PRK04424 8 RQKALQELIEENPFITDEELAEKFGVSIQTIRLDRMELGIPELR 51 (185)
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHCcCHHHHHHHHHHHhcchHH
Confidence 66778888888999999999999999999999999999888876
No 330
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.00 E-value=22 Score=19.64 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 55 KALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
.++..++.++...|+++++...++..++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35677899999999999999999887764
No 331
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=56.92 E-value=30 Score=23.30 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=24.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
+...|+++||+.+|+|.+.|-....+++.
T Consensus 18 ~~~~t~~eIa~~lg~s~~~V~~~~~~al~ 46 (50)
T PF04545_consen 18 FEGLTLEEIAERLGISRSTVRRILKRALK 46 (50)
T ss_dssp TST-SHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 77889999999999999999988887764
No 332
>PF12728 HTH_17: Helix-turn-helix domain
Probab=55.78 E-value=27 Score=23.52 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=27.5
Q ss_pred cchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 356 I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
++.+++|+.+|++...+. +++..|.|.+. ...+...+.
T Consensus 2 lt~~e~a~~l~is~~tv~----~~~~~g~i~~~--~~g~~~~~~ 39 (51)
T PF12728_consen 2 LTVKEAAELLGISRSTVY----RWIRQGKIPPF--KIGRKWRIP 39 (51)
T ss_pred CCHHHHHHHHCcCHHHHH----HHHHcCCCCeE--EeCCEEEEe
Confidence 478899999999988765 55678998776 244444444
No 333
>PF12854 PPR_1: PPR repeat
Probab=55.63 E-value=20 Score=22.09 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREM 80 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l 80 (428)
.-.+..++.-|++.|+.++|.+++..+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 456788999999999999999988754
No 334
>PF13041 PPR_2: PPR repeat family
Probab=55.40 E-value=25 Score=23.51 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 55 KALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
-++.-++..|.+.|+++++.++++++.+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45677899999999999999999999864
No 335
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.88 E-value=35 Score=28.37 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=47.5
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC-CEEEEccCCccchHHHHHHHHHHHHHHH
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN-RLLERGDRSKGMKKYTAIDKWNSQLRKK 421 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~-g~v~~~~~~~~~~~~~~l~~w~~~v~~l 421 (428)
|+.+++.--++|+.+++..+|++-.-++..+.+|+..|.|.- ++. |+. . + .++-.+|.+.-.++
T Consensus 17 IvElVRe~GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~~---~G~~GvF--~--s-----eqA~~dw~~~~~~~ 81 (127)
T PF06163_consen 17 IVELVREHGRITIKQLVAKTGASRNTVKRYLRELVARGDLYR---HGRSGVF--P--S-----EQARKDWDKARKKL 81 (127)
T ss_pred HHHHHHHcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeEe---CCCcccc--c--c-----HHHHHHHHHhHHhh
Confidence 456667778999999999999999999999999999998742 222 332 1 1 24556777666655
No 336
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=54.42 E-value=20 Score=25.02 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
+.+++.+||+.+|++..-+...|.+..
T Consensus 22 R~~tl~elA~~lgis~st~~~~LRrae 48 (53)
T PF04967_consen 22 RRITLEELAEELGISKSTVSEHLRRAE 48 (53)
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 799999999999999988887777654
No 337
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=54.05 E-value=72 Score=27.05 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
++.++|++.|.+.+..-|+ ...++++=++.+.-+|+.+++++-+.+-+++-
T Consensus 57 g~Ld~AlE~F~qal~l~P~----raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPE----RASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred cchHHHHHHHHHHHHhccc----chHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3567888888887776543 25667777777888888888888777777765
No 338
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=53.47 E-value=1.4e+02 Score=25.36 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=76.2
Q ss_pred HHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHH
Q 014255 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (428)
Q Consensus 143 a~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~ 222 (428)
|-..-+.|++++|++...+....+++- ...|-..++.+.-.|+..+|-.-+++|..+.+.-. +.-.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~r------------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t--rtac 115 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPER------------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT--RTAC 115 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccc------------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc--hHHH
Confidence 334557899999999999888887542 12334455667778899999888888876654432 2222
Q ss_pred HHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHH----HHHHHHHHh
Q 014255 223 IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL----KYLVLANML 273 (428)
Q Consensus 223 ~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l----~y~~L~~lL 273 (428)
.-...-|.+|-..|+-..|...|-.+- ..|++.+..-| .|..+|.=|
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA----~LGS~FAr~QLV~lNPYAAlCN~M 166 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAA----QLGSKFAREQLVELNPYAALCNQM 166 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHH----HhCCHHHHHHHHhcChHHHHHHHH
Confidence 334566888888889999998887763 36666443322 377777543
No 339
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=52.82 E-value=3e+02 Score=28.90 Aligned_cols=98 Identities=10% Similarity=0.112 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHH
Q 014255 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFK 137 (428)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr 137 (428)
.+++..|-+ ++.+++.++|.+.+-.+-+.-.-+++.+.=.++...+.+ + ...++....+ ++. .++...+.
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~d--D-----~D~fl~l~~k-iqt-~lg~~~~~ 205 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGD--D-----KDFFLRLQKK-IQT-KLGEGRGS 205 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccc--c-----HHHHHHHHHH-HHH-hhccchHH
Confidence 344555544 777777777776665542221223333333333333332 2 2334444333 333 23333333
Q ss_pred HhH-HHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 138 TNL-KLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 138 ~~~-~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
+.+ .+-..|-+..+|++|.+++..+.+.
T Consensus 206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 206 VLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 333 3446677888999999999988887
No 340
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.97 E-value=56 Score=29.10 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=67.4
Q ss_pred cchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhC-CChHH
Q 014255 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPEKD 371 (428)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~-l~~~~ 371 (428)
..+..+..|..-..++++..|=.....+.+. -+++.-+-+.+|.-+-..+.-.|..|.=.-+|+++| ++..+
T Consensus 96 e~~r~ii~L~~~LEt~~Fq~FW~~~~~N~~m-------le~itGFedsvr~yachvv~iTyQkI~k~lLaellG~~sDs~ 168 (217)
T KOG3252|consen 96 EPFRSIIDLGDYLETCRFQQFWQEADENRDM-------LEGITGFEDSVRKYACHVVGITYQKIDKWLLAELLGGLSDSQ 168 (217)
T ss_pred cchhHHHhHHHHHhhchHHHHhhhhccchHH-------hcCCCcHHHHHHHHHHHheechHhhchHHHHHHhhCcccHHH
Confidence 3455667788888899999988666555433 344455556666555555557799999999999998 46679
Q ss_pred HHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 372 VEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 372 vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+|.++.+ .|=+.+.+|.+.+-
T Consensus 169 le~~~~~-------~GW~a~e~G~ifv~ 189 (217)
T KOG3252|consen 169 LEVWMTK-------YGWIADESGQIFVA 189 (217)
T ss_pred HHHHHHH-------ccceecCCceEEEe
Confidence 9998887 78888889966554
No 341
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=51.49 E-value=60 Score=25.21 Aligned_cols=67 Identities=16% Similarity=0.297 Sum_probs=45.2
Q ss_pred HHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC
Q 014255 35 ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (428)
Q Consensus 35 Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (428)
.++.++.-++.+|++ ..+..+++..+...|+++++++.+-.++..- +.-.....-+.+-.+++.+..
T Consensus 7 ~~~al~~~~a~~P~D----~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDD----LDARYALADALLAAGDYEEALDQLLELVRRD-RDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccccccHHHHHHHHHHHHcCC
Confidence 456667777777655 5778899999999999999999887777764 433445555666566666543
No 342
>PF13730 HTH_36: Helix-turn-helix domain
Probab=51.33 E-value=22 Score=24.42 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=27.3
Q ss_pred cchhhHHhHhCCChHHHHHHHHHHHHcCce
Q 014255 356 IRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (428)
Q Consensus 356 I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i 385 (428)
-|.+.||+.+|++..-|.+.+-.+...|.|
T Consensus 26 pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 389999999999999999999999988864
No 343
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=50.95 E-value=20 Score=28.59 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=29.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEE--EecCCCEEEEcc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH--IDQVNRLLERGD 400 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~--IDq~~g~v~~~~ 400 (428)
...++-++||+.+|++..++-+.+.+|-.+|.+..+ =|...|.-...|
T Consensus 25 ~~~l~de~la~~~~l~~~~vRkiL~~L~~~~lv~~~~~~d~~~~~~~~yw 74 (105)
T PF02002_consen 25 KGELTDEDLAKKLGLKPKEVRKILYKLYEDGLVSYRRRKDDERGWTRYYW 74 (105)
T ss_dssp H--B-HHHHHHTT-S-HHHHHHHHHHHHHHSS-EEEEE--------EEEE
T ss_pred cCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEEEcCCCcEEEEEE
Confidence 456889999999999999999999999999999654 333334444444
No 344
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=50.86 E-value=2.2e+02 Score=26.92 Aligned_cols=174 Identities=13% Similarity=0.116 Sum_probs=104.4
Q ss_pred cCCCCHHHHHHHHHHhhcCC----CccchhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 014255 27 LVETDPEGALAGFAEVVAME----PEKAEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM 101 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~----~~~~~~~~k~l~~l~~l~~~~~-~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il 101 (428)
.+++|.+.|.-+|.++-... |+..+.-.+.+.++|+-..+.+ +++.+..++++...++ +...+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l-~~~~~----------- 71 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL-EKPGK----------- 71 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-Hhhhh-----------
Confidence 46778888888888875432 2334556777778888888888 8888888888887776 22100
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHH---HHHHHHHHHHhhccCCCCCcchhhh
Q 014255 102 DFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYG---RMSKILKELHKSCQREDGTDDQKKG 178 (428)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~---~A~~~l~el~~~~~~~~~~~d~~~~ 178 (428)
.-..+|+ ...+.+++..-|+..|++.+.++ +|.+++..+..+..+
T Consensus 72 -~~~~~~~---------------------~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~---------- 119 (278)
T PF08631_consen 72 -MDKLSPD---------------------GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN---------- 119 (278)
T ss_pred -ccccCCc---------------------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC----------
Confidence 0001111 11245567778999999888765 566777777666432
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHh-HHhhhcHHHHHHHHHHHHHh
Q 014255 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM-HMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 179 ~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~-~~~~~~y~~A~~~f~ea~~~ 251 (428)
+.++++..+++..+.++...+...+.......+ .++.. +..+...+ .+.+.+...|+.+|...+.+
T Consensus 120 --~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~----~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 120 --KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESN----FDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred --CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccch----HHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 345666666777677777777766665532211 01111 22111112 23455667788888777543
No 345
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=50.72 E-value=25 Score=33.13 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=41.5
Q ss_pred HHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 342 ~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
|.+.|+++++.-..|+++++|+.|++|+.-+.+-|..|=..|.+.
T Consensus 6 R~~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~ 50 (253)
T COG1349 6 RHQKILELLKEKGKVSVEELAELFGVSEMTIRRDLNELEEQGLLL 50 (253)
T ss_pred HHHHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEE
Confidence 777889999999999999999999999999999999999988774
No 346
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.72 E-value=2.1e+02 Score=28.42 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhcCC-C-------ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 014255 32 PEGALAGFAEVVAME-P-------EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~-~-------~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (428)
|.++-..|..++..- + ....+-..+|-|++.++..+|+...+.+++++.+=.++..... ..+.+.+.
T Consensus 10 Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~-----~F~~~~~~ 84 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHP-----SFSPFRSN 84 (360)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-----Hhhhhhcc
Confidence 555555555555432 2 1235668899999999999999999999999998887433211 11111111
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHH-hhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHH
Q 014255 104 VSGSASQNFSLLREFYQTTLKALEE-AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (428)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~le~l~~-~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~ 182 (428)
... ... .+.. ..+.|-++....+........|-+..|+++-+=+...... .|+.-..+.+
T Consensus 85 ~~~-g~~--------------rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~----~DP~g~ll~I 145 (360)
T PF04910_consen 85 LTS-GNC--------------RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPD----EDPLGVLLFI 145 (360)
T ss_pred ccc-Ccc--------------ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CCcchhHHHH
Confidence 111 000 0111 1355777777789999999999999999988888877543 1432234556
Q ss_pred HHHHHHH
Q 014255 183 EVYAIEI 189 (428)
Q Consensus 183 e~~l~e~ 189 (428)
++++..+
T Consensus 146 D~~ALrs 152 (360)
T PF04910_consen 146 DYYALRS 152 (360)
T ss_pred HHHHHhc
Confidence 6655543
No 347
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=49.88 E-value=3.2e+02 Score=29.85 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=36.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
.++.++||+.+.-++++... +. .+...+..-..-.|..+.....|.+|.++|-.+
T Consensus 768 elr~klgDwfrV~qL~r~g~---~d-~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGG---SD-DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccC---CC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778899999888776431 11 122233333444578888889999999988765
No 348
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=49.57 E-value=26 Score=26.74 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHHHHhhccccccchhhHHhHhCCChHHHHHHH
Q 014255 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLL 376 (428)
Q Consensus 342 ~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l 376 (428)
|..-|+.++.- .++++.+||+.+|++..-|-..|
T Consensus 7 R~~~I~e~l~~-~~~ti~dvA~~~gvS~~TVsr~L 40 (80)
T TIGR02844 7 RVLEIGKYIVE-TKATVRETAKVFGVSKSTVHKDV 40 (80)
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHhCCCHHHHHHHh
Confidence 55667778777 99999999999999998887744
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.49 E-value=20 Score=32.48 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEM 73 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l 73 (428)
+.|+++|+..|..+++...++.+-....+..|+.+|.++|+++.+
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 457888888888888866533233356777888888888888765
No 350
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=48.78 E-value=1.5e+02 Score=24.93 Aligned_cols=52 Identities=21% Similarity=0.139 Sum_probs=39.8
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
..+...-..++++.||+.++++...|-..|.+|...|.|.-. ..+.|.+++.
T Consensus 14 ~~l~~~~~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~---~~~~i~LT~~ 65 (142)
T PRK03902 14 YLLIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTPK 65 (142)
T ss_pred HHHHhcCCCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEe---cCceEEECHH
Confidence 334444456688999999999999999999999999988632 2355777654
No 351
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=48.69 E-value=29 Score=32.96 Aligned_cols=46 Identities=11% Similarity=0.092 Sum_probs=40.7
Q ss_pred HHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 341 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 341 i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
-|...|+.+++...+++..+||+.|++|+.-+.+-|..|=..|.+.
T Consensus 17 eR~~~Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~ 62 (269)
T PRK09802 17 ERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAV 62 (269)
T ss_pred HHHHHHHHHHHHcCCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeE
Confidence 3666778888888889999999999999999999999998998875
No 352
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=48.46 E-value=31 Score=24.73 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=26.1
Q ss_pred HHHHHhhccccccchhhHHhHhCCChHHHHHHHHH
Q 014255 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVS 378 (428)
Q Consensus 344 ~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~ 378 (428)
++..-+.+.=-.|++.+||+.||++...|..+=++
T Consensus 11 kA~e~y~~~~g~i~lkdIA~~Lgvs~~tIr~WK~~ 45 (60)
T PF10668_consen 11 KAFEIYKESNGKIKLKDIAEKLGVSESTIRKWKSR 45 (60)
T ss_pred HHHHHHHHhCCCccHHHHHHHHCCCHHHHHHHhhh
Confidence 34444445556899999999999999888776543
No 353
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.65 E-value=71 Score=28.58 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhcCCCc--c-chhhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 32 PEGALAGFAEVVAMEPE--K-AEWGFK-ALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~--~-~~~~~k-~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
.+.|+..+..|-+..+- + -+..-+ ...+++-+|.+.|.++++.+.++.+.+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 37888888888443221 1 122222 3345678999999999999999988774
No 354
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=47.65 E-value=64 Score=29.10 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=38.3
Q ss_pred hhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 349 ~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
++.....++..+||+.++++..-+-+.|.+|...|.|.-.-+ ....+.++
T Consensus 151 ~l~~~g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~-r~~~~~lT 200 (203)
T TIGR01884 151 VLKAEGEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGR-KGKRYSLT 200 (203)
T ss_pred HHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC-CccEEEeC
Confidence 333335689999999999999999999999999999975433 34444444
No 355
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.38 E-value=2.3e+02 Score=26.00 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC---CChhHHHHHHHHHHHHHH-H
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS---QNFSLLREFYQTTLKALE-E 128 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~---~~~~~~~~~~~~~le~l~-~ 128 (428)
....++.=+.-++..|+|+++..-|+.-+..- +..+. -++.|+ +++ .. ........-++-|-..|+ |
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~-----e~rsIl--y~N-raaa~iKl~k~e~aI~dcsKaiel~ 164 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESC-PSTST-----EERSIL--YSN-RAAALIKLRKWESAIEDCSKAIELN 164 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC-ccccH-----HHHHHH--Hhh-hHHHHHHhhhHHHHHHHHHhhHhcC
Confidence 34566777888999999999999999888765 33221 112221 111 00 001111222222222222 1
Q ss_pred hhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 129 ~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
.++. |...|-|..|.....|++|++=|..+...
T Consensus 165 pty~----kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 165 PTYE----KALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred chhH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 2233 33447789999999999999888888776
No 356
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=47.35 E-value=4e+02 Score=28.81 Aligned_cols=122 Identities=10% Similarity=0.148 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHhcCCCC
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN--YSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~--~~~k~v~~il~~~~~~~~ 109 (428)
|+-|+..|..-++..|+. .+.-+..+...++++++.+.|...++.= ..+++. ..-..-..+-+.++.+|+
T Consensus 154 Pets~rvyrRYLk~~P~~-------~eeyie~L~~~d~~~eaa~~la~vln~d-~f~sk~gkSn~qlw~elcdlis~~p~ 225 (835)
T KOG2047|consen 154 PETSIRVYRRYLKVAPEA-------REEYIEYLAKSDRLDEAAQRLATVLNQD-EFVSKKGKSNHQLWLELCDLISQNPD 225 (835)
T ss_pred hHHHHHHHHHHHhcCHHH-------HHHHHHHHHhccchHHHHHHHHHhcCch-hhhhhcccchhhHHHHHHHHHHhCcc
Confidence 567777777777766532 3344566778899999999888887753 222211 122344455566666665
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
.- +-..+=..++.-+..-++.-. .+-.-||+.|...|.+++|.+++.+.-..
T Consensus 226 ~~--~slnvdaiiR~gi~rftDq~g--~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 226 KV--QSLNVDAIIRGGIRRFTDQLG--FLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred hh--cccCHHHHHHhhcccCcHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 21 001111111121211122222 23347899999999999998887765543
No 357
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=47.20 E-value=29 Score=22.36 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=21.8
Q ss_pred HHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 225 RECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 225 ~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
....|.+.+...+|.+|..+|..+..-
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344588888999999999999998653
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.18 E-value=85 Score=30.29 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=45.3
Q ss_pred HhhhhhHHH-----HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHH
Q 014255 128 EAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 202 (428)
Q Consensus 128 ~~~~~kl~l-----r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~ 202 (428)
|+.++|-++ ++.-+.++-|.+.|.+++|.++.+.+...-. +.-+.....++++..+||--.|.
T Consensus 266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldp------------L~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDP------------LSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCh------------hhhHHHHHHHHHHHHhccchhhh
Confidence 444555444 4444778889999999999999999887721 22234445567788888865555
Q ss_pred HHHHH
Q 014255 203 QLYQK 207 (428)
Q Consensus 203 ~~l~~ 207 (428)
.-|.+
T Consensus 334 khyer 338 (361)
T COG3947 334 KHYER 338 (361)
T ss_pred hHHHH
Confidence 55443
No 359
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.79 E-value=1.2e+02 Score=29.93 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=62.3
Q ss_pred hccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhh
Q 014255 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 228 (428)
Q Consensus 149 ~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~ 228 (428)
.|++..-..-|+.++-.-.. | ++ ....+-|-.+..-|++.+.|..|...|+++.+. ...+|.+.+.++.--
T Consensus 55 ~gd~~~~~~~LqslK~da~E--~--ep---~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NR 125 (390)
T KOG0551|consen 55 EGDPNPDNVCLQSLKADAEE--G--EP---HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNR 125 (390)
T ss_pred CCCCCccHHHHHHhhhcccc--C--Ch---HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhH
Confidence 36665544555555443221 1 21 346788888899999999999999999887653 345788888887655
Q ss_pred hHhHHhhhcHHHHHHHHHHH
Q 014255 229 GKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea 248 (428)
+-.+.+-|||..|.+.-..+
T Consensus 126 AAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 126 AAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666778888887776666
No 360
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=46.66 E-value=1.9e+02 Score=32.03 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=22.3
Q ss_pred HHhHHHHHHHH--hhccHHHHHHHHHHHHhhc
Q 014255 137 KTNLKLCKIWF--DMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 137 r~~~~La~l~~--~~g~~~~A~~~l~el~~~~ 166 (428)
.+.+++..++. ..|++++|+.+++.++-.=
T Consensus 706 ~lLl~~~~~f~~y~~~~~e~aL~~le~l~LiP 737 (835)
T KOG2168|consen 706 SLLLDLVSFFDLYHNGEWEEALSILEHLDLIP 737 (835)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhccC
Confidence 45556666644 5688999999999998763
No 361
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.99 E-value=1.5e+02 Score=28.72 Aligned_cols=181 Identities=12% Similarity=0.170 Sum_probs=88.3
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHHhhcCCCccch---hhHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 014255 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPEKAE---WGFKALKQT------VKLYYRLGKYKEMMDAYREMLTYIKSAV 88 (428)
Q Consensus 18 ~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~---~~~k~l~~l------~~l~~~~~~~~~l~e~~~~l~~~~~~~~ 88 (428)
+-|||.+. ++..|-+.|+++-..-|.-.+ ....++.+. ..+....++-+.+.+-.-++-.-++-+
T Consensus 51 gyCYY~~Q-----~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs- 124 (459)
T KOG4340|consen 51 GYCYYRLQ-----EFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS- 124 (459)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-
Confidence 45888886 567888899888554442211 122233332 234444455444444332222211000
Q ss_pred hhhHHHHHHHHHHHHhcCCCCC-------ChhHHHHHHHHHHHHHHHhhhhhHHH-HHhHHHHHHHHhhccHHHHHHHHH
Q 014255 89 TRNYSEKCINNIMDFVSGSASQ-------NFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKILK 160 (428)
Q Consensus 89 ~k~~~~k~v~~il~~~~~~~~~-------~~~~~~~~~~~~le~l~~~~~~kl~l-r~~~~La~l~~~~g~~~~A~~~l~ 160 (428)
..--.-.+.+++......+. =..+..-.|+.+...++.+..=.-|- -+-..+|--++..|+|..|++++.
T Consensus 125 --e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 --EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred --cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHH
Confidence 00000123344444320110 01122335666666555542111111 234577888899999999999999
Q ss_pred HHHhhccC--C--------CCCcchh-------hhhhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 014255 161 ELHKSCQR--E--------DGTDDQK-------KGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (428)
Q Consensus 161 el~~~~~~--~--------~~~~d~~-------~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~ 206 (428)
++-..--+ | +|.|-.+ -.+.+++-+-+..-+++..||+.-|+..+.
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 98753111 1 1111000 012234444444556788899988887765
No 362
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.39 E-value=75 Score=27.02 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
.|..+-|..|+++++.. ..+....++..|+--|++.|+|++.+.++..|+..
T Consensus 49 ~dv~~GI~iLe~l~~~~--~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSA--HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHhHHHHHHHhhhc--CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 35789999999998732 22224678888999999999999999999999875
No 363
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=45.32 E-value=29 Score=32.67 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=35.5
Q ss_pred HHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 341 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 341 i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
=|...|+.++....+|+.++||+.||+|++-+.+-|..+=
T Consensus 7 eR~~~I~~~l~~~~~v~v~eLa~~~~VS~~TIRRDL~~Le 46 (252)
T PRK10681 7 ERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHS 46 (252)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHhCCCHHHHHHHHHHhh
Confidence 3777889999999999999999999999999988888744
No 364
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.07 E-value=1.6e+02 Score=25.60 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=47.4
Q ss_pred HHhhccccccchhhHHhHh--CCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC--------ccchHHHHHHHHHH
Q 014255 347 LKLIKPYTRIRIPFISKEL--NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS--------KGMKKYTAIDKWNS 416 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l--~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~--------~~~~~~~~l~~w~~ 416 (428)
..--+||+... |..-| +++-..|.+.|-.+..+|+|.+| +.+...|++...+ ....+...+..+..
T Consensus 11 ~~qNRPys~~d---i~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K-~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~ 86 (169)
T PF07106_consen 11 KEQNRPYSAQD---IFDNLHNKVGKTAVQKALDSLVEEGKIVEK-EYGKQKIYFANQDELEVPSPEELAELDAEIKELRE 86 (169)
T ss_pred HHcCCCCcHHH---HHHHHHhhccHHHHHHHHHHHHhCCCeeee-eecceEEEeeCccccCCCCchhHHHHHHHHHHHHH
Confidence 33457886554 44444 58889999999999999999999 4666677765321 22233444555555
Q ss_pred HHHHHHH
Q 014255 417 QLRKKRR 423 (428)
Q Consensus 417 ~v~~l~~ 423 (428)
.+..|-.
T Consensus 87 el~~l~~ 93 (169)
T PF07106_consen 87 ELAELKK 93 (169)
T ss_pred HHHHHHH
Confidence 5555543
No 365
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=45.05 E-value=74 Score=23.22 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=39.7
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
-+++..-...|+++|++..+++.+++-.-|.=+..+++| .|++.+|.+.+
T Consensus 14 w~~L~~~~~~s~~el~k~~~l~~~~~~~AiGWLarE~KI--~~~~~~~~~~v 63 (65)
T PF10771_consen 14 WQLLNENGEWSVSELKKATGLSDKEVYLAIGWLARENKI--EFEEKNGELYV 63 (65)
T ss_dssp HHHHCCSSSEEHHHHHHHCT-SCHHHHHHHHHHHCTTSE--EEEEETTEEEE
T ss_pred HHHHhhCCCcCHHHHHHHhCcCHHHHHHHHHHHhccCce--eEEeeCCEEEE
Confidence 344455678999999999999999999999999999998 45577776665
No 366
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.54 E-value=53 Score=21.10 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 183 e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
++|.....+.+..++|+.|..=|.+|..+...+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 45666777888889999999999988877655443
No 367
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.28 E-value=95 Score=32.85 Aligned_cols=62 Identities=16% Similarity=0.452 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 331 RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 331 ~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
.++|+.+.+.|.++ +.--..|+++++|..+++|.+.+...|..-.....|+|++|- |++...
T Consensus 114 e~Y~d~iaeEinek-----LqE~gqvtiaeLakq~dl~sellqs~l~ek~lg~iikgr~dg--gviyT~ 175 (776)
T KOG2235|consen 114 EEYVDRIAEEINEK-----LQEQGQVTIAELAKQWDLPSELLQSLLIEKLLGSIIKGRVDG--GVIYTS 175 (776)
T ss_pred HHHHHHHHHHHHHH-----HHHhcchHHHHHHHhcCCcHHHHHHHHHHHhhccceeeeecC--CEEeeH
Confidence 34566666666543 223378999999999999999999999888777778999997 666543
No 368
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.76 E-value=3.7e+02 Score=27.39 Aligned_cols=180 Identities=17% Similarity=0.268 Sum_probs=93.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHH-HhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh------------hhh
Q 014255 188 EIQMYTETKNNKKLKQLYQKA-LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN------------YDE 254 (428)
Q Consensus 188 e~~l~~~~~d~~ka~~~l~~a-~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~------------~~~ 254 (428)
..|++.-+||+.-.-+.++-- +.+-+.+ |..+ +-.+-|-.|+.-|+|.+|.+-|..+... |.-
T Consensus 241 LlR~H~lLgDhQat~q~idi~pk~iy~t~--p~c~--VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~ 316 (525)
T KOG3677|consen 241 LLRMHILLGDHQATSQILDIMPKEIYGTE--PMCR--VTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQY 316 (525)
T ss_pred HHHHHHHhhhhHhhhhhhhcCchhhcCcc--ccee--EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhH
Confidence 457788889854322222211 1111111 2111 2245688999999999999999998532 110
Q ss_pred h-cchhHHHHHHHHHHHHHhhCCCCC-CCCcccccccCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHh---------
Q 014255 255 A-GNQRRIQCLKYLVLANMLMESEVN-PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKT--------- 323 (428)
Q Consensus 255 ~-~~~~~~~~l~y~~L~~lL~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~--------- 323 (428)
. .+..+-+....+.+|-.+....++ .+.++..-.|- ++ |.. -.+++...|.+...-.++.
T Consensus 317 d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~-d~----ml~----mqng~~q~~ks~f~y~cpkflsp~~~~~ 387 (525)
T KOG3677|consen 317 DMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYG-DK----MLP----MQNGDPQVFKSLFSYLCPKFLSPVVPNY 387 (525)
T ss_pred hhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhc-ch----hhh----hhcCChHHHHHHHHHcCccccCCCCccc
Confidence 0 111222222233334333322222 12222111111 11 100 1346666666554332222
Q ss_pred ------hcCChhHHHHHHHHHHHHHHH----HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 324 ------IMDDPFIRNYIEDLLKNVRTQ----VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 324 ------l~~D~~l~~~~~~l~~~i~~~----~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
...+|.+++ ...+.+.+... .++.+.+-|++.....+|..++++.++-.+.+.+++.
T Consensus 388 dgv~~~y~kePl~~q-lq~fld~v~qq~dl~~~rsylklyTt~P~kkla~F~D~~d~~~dk~li~Ll~ 454 (525)
T KOG3677|consen 388 DGVLPNYHKEPLLQQ-LQVFLDEVSQQADLPTIRSYLKLYTTLPVKKLASFLDLTDQERDKFLIQLLV 454 (525)
T ss_pred ccccccccccHHHHH-HHHHhHHHhhhccchHHHHHHHHHHhccHHHhhhccCCchhhhhhhHHHHHH
Confidence 235565544 33344444444 6677778899999999999999998886666666653
No 369
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=43.37 E-value=74 Score=24.62 Aligned_cols=39 Identities=8% Similarity=-0.076 Sum_probs=35.3
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEE
Q 014255 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (428)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~I 389 (428)
..|+-||..-+|+++++...-+...|..+-..|.|.--.
T Consensus 37 ~~~K~ITps~lserlkI~~SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 37 KKEKIVTPYTLASKYGIKISVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred ccCcEEcHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEe
Confidence 349999999999999999999999999999999997653
No 370
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=42.62 E-value=3.1e+02 Score=26.26 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=52.7
Q ss_pred HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 134 l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
.++.+..+++..+...|.++.+.+.++++-..-+ .-=..+...++.|...|+...|...|+...+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp------------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDP------------YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc------------cchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4557788999999999999999999988877622 12246667778999999999999999987654
No 371
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=42.06 E-value=86 Score=23.38 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=31.0
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
+++++++-+.+|++.+.+--.|++|-..|.|.
T Consensus 18 c~TLeeL~ekTgi~k~~LlV~LsrL~k~GiI~ 49 (72)
T PF05584_consen 18 CCTLEELEEKTGISKNTLLVYLSRLAKRGIIE 49 (72)
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 99999999999999999999999999999985
No 372
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.50 E-value=2.7e+02 Score=25.24 Aligned_cols=151 Identities=9% Similarity=0.104 Sum_probs=85.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh---hhhhHHH
Q 014255 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA---KNERLWF 136 (428)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~---~~~kl~l 136 (428)
-+.+|.+.|||.++-.+|-....-- -.-+...+....+-..+.+.+. ....--|.+.+....+.. .-+|.++
T Consensus 57 eie~Ckek~DW~klg~ly~nv~~gc---e~~~dlq~~~~~va~~Ltkd~K--dk~~vPFceFAetV~k~~q~~e~dK~~L 131 (233)
T PF14669_consen 57 EIEHCKEKGDWTKLGNLYINVKMGC---EKFADLQRFCACVAEALTKDSK--DKPGVPFCEFAETVCKDPQNDEVDKTLL 131 (233)
T ss_pred HHHHHhhhccHHHHhhHHhhHHhhc---CCHHHHHHHHHHHHHHHHhccc--ccCCCCHHHHHHHHhcCCccchhhhhhh
Confidence 3579999999999999998776532 2334444444444444332111 011122333343333332 2344555
Q ss_pred -HHhHHHHHHHHhhccHHHHHHHHHHHHh---hccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 137 -KTNLKLCKIWFDMGEYGRMSKILKELHK---SCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 137 -r~~~~La~l~~~~g~~~~A~~~l~el~~---~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
|+-+-+--.|....++.+..++|..++. ..+...|-.+.-+..-...+.-.-+.+++..|+.+.|-..++.+.=+.
T Consensus 132 GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLreseWii 211 (233)
T PF14669_consen 132 GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESEWII 211 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccceee
Confidence 7766666778888889887766655554 444333311111122233444444567889999999988888765444
Q ss_pred ccC
Q 014255 213 SAI 215 (428)
Q Consensus 213 ~~i 215 (428)
++.
T Consensus 212 ~t~ 214 (233)
T PF14669_consen 212 STP 214 (233)
T ss_pred cCC
Confidence 443
No 373
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=40.97 E-value=73 Score=20.73 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
...+...||+.+|++...+-..+.+..
T Consensus 25 ~~~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 25 EGLSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 778999999999999999988887754
No 374
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=40.80 E-value=2e+02 Score=28.49 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHH-HHHHhhhhhHH
Q 014255 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLK-ALEEAKNERLW 135 (428)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le-~l~~~~~~kl~ 135 (428)
++.-|.-|+++|.|++++++|...+..- +..+--. .+..+.++.- .-+..+-+ |-....=++.|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~----~NRA~AYlk~----------K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYH----INRALAYLKQ----------KSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC-CCCccch----hhHHHHHHHH----------HHHHHHHHhHHHHHHhhHHH
Confidence 4555788999999999999999877654 4222111 1122222211 11111111 11111334566
Q ss_pred HHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 136 lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
.+.+.+-+.-.++.|...+|.+-.+.+..+
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 666667777777777777777666555555
No 375
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.54 E-value=3.6e+02 Score=26.29 Aligned_cols=174 Identities=13% Similarity=0.184 Sum_probs=94.3
Q ss_pred cCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Q 014255 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMD-AYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e-~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (428)
=..+|++...+.|..+++.-.+.++| -..=.++.-+..+.|+...++. .+.++..+.++. .-..+...+...+..+.
T Consensus 43 RqasD~~~~~kvl~~i~dLl~S~~~~-~~Lneql~~L~kKhGQlk~sI~~MIq~vmEylKg~-~dl~t~i~~ietlr~Vt 120 (439)
T COG5071 43 RQASDTSTNTKVLIYIADLLFSAGDF-QGLNEQLVSLFKKHGQLKQSITSMIQHVMEYLKGI-DDLKTKINLIETLRTVT 120 (439)
T ss_pred hhhccHHHHHHHHHHHHHHHhhcCch-hhhhhHHHHHHHHcchHHHHHHHHHHHHHHhccCc-ccccchHhHHHHHHHHh
Confidence 34457888888888887754444444 1123456667778888887776 455666655332 11122222222222222
Q ss_pred CCC----CCC---hhHHHHHHHHHHHHHHHh------------hhhhHHHHHhHHH--HHHHHhhccHHHHHHHHHHHHh
Q 014255 106 GSA----SQN---FSLLREFYQTTLKALEEA------------KNERLWFKTNLKL--CKIWFDMGEYGRMSKILKELHK 164 (428)
Q Consensus 106 ~~~----~~~---~~~~~~~~~~~le~l~~~------------~~~kl~lr~~~~L--a~l~~~~g~~~~A~~~l~el~~ 164 (428)
+.. ... .+.+.+.++.+-+ ++.+ +.-++..++...| .++....|||-.|.-+..++++
T Consensus 121 EgkIFvEvERariT~~L~~ikee~Gd-i~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~K 199 (439)
T COG5071 121 EGKIFVEVERARLTQLLSQIKEEQGD-IKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINK 199 (439)
T ss_pred cCceEEehhHHHHHHHHHHHHHHhcc-hhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 210 000 0111222222111 1110 0011111333333 3345567999999999999999
Q ss_pred hccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014255 165 SCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (428)
Q Consensus 165 ~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a 208 (428)
.+.+.+.. .++++++|=+.+++.+..+.|-.+..+|+..
T Consensus 200 K~Fe~~d~-----~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~v 238 (439)
T COG5071 200 KFFEKEDV-----QSLKLKYYELKVRIGLHDRAYLDVCKYYRAV 238 (439)
T ss_pred HHhccccH-----HHHHHHHHHHhheeecccHHHHHHHHHHHHH
Confidence 88765322 4788999988888888887777776565543
No 376
>PRK15331 chaperone protein SicA; Provisional
Probab=39.84 E-value=69 Score=28.07 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
++++++|...|+-+.-.++- ..+-.-.|+-++-..|+|+++++.|......
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~----n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFY----NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45689999998888766542 2455677788888888888888888755443
No 377
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=39.45 E-value=39 Score=23.00 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=21.9
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
.+...+..+||+.+|+|+..|...+.+..
T Consensus 23 ~~~g~s~~eIa~~l~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 23 YFQGMSYAEIAEILGISESTVKRRLRRAR 51 (54)
T ss_dssp HTS---HHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45677999999999999999999988765
No 378
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=38.95 E-value=81 Score=26.54 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=39.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
..++.++||+.++++..-+=..|-+|...|.|.=..|..++....
T Consensus 53 ~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~ 97 (144)
T PRK11512 53 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVL 97 (144)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCCeeE
Confidence 469999999999999999999999999999999888877774443
No 379
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=38.95 E-value=67 Score=29.28 Aligned_cols=63 Identities=8% Similarity=0.152 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 334 IEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 334 ~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
.+.+++.|++.-+..-+.|=.+++-.+||+.||+|-.-|-.-|..+-.+|.|.- -+..|+.+.
T Consensus 9 ~~~vy~~i~~~I~~g~l~pG~~L~e~eLae~lgVSRtpVREAL~~L~~eGlv~~--~~~~G~~V~ 71 (224)
T PRK11534 9 ALDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTV--VNQKGYRVA 71 (224)
T ss_pred hHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEE--eCCCceEeC
Confidence 355777787777777778888999999999999999999999999999999864 344455443
No 380
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=38.94 E-value=72 Score=22.45 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=28.5
Q ss_pred HHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 342 ~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
|+..|+.++---..+++.++|+.+|++.-.+...+..+=
T Consensus 6 rq~~Ll~~L~~~~~~~~~ela~~l~~S~rti~~~i~~L~ 44 (59)
T PF08280_consen 6 RQLKLLELLLKNKWITLKELAKKLNISERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHHHTSBBHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555554336789999999999999988888877653
No 381
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=38.79 E-value=1.4e+02 Score=24.10 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=41.2
Q ss_pred hccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 350 ~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
+..|.-||...||+.+++...-+...|-.|...|.|.-..-+....|+.
T Consensus 54 V~~~K~ITp~~lserlkI~~SlAr~~Lr~L~~kG~Ik~V~k~~~~~IYt 102 (105)
T PF03297_consen 54 VPKMKLITPSVLSERLKINGSLARKALRELESKGLIKPVSKHHRQRIYT 102 (105)
T ss_dssp CTTSSCECHHHHHHHHCCSCHHHHHHHHHHHHCCSSEEEECCTTCEEEE
T ss_pred hccCcEeeHHHHHHhHhhHHHHHHHHHHHHHHCCCEEEEeccCCeEEEe
Confidence 3458999999999999999999999999999999998775555555554
No 382
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.79 E-value=3.2e+02 Score=25.30 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=28.9
Q ss_pred HHHHHhhcccCCCC-HHHHHHHHHHhhcCCCc----cchhhHHHHHHHH
Q 014255 18 VLCSILEKGLVETD-PEGALAGFAEVVAMEPE----KAEWGFKALKQTV 61 (428)
Q Consensus 18 ~~~~~~ak~~~~~~-~~~Ai~~~~~ii~~~~~----~~~~~~k~l~~l~ 61 (428)
..+.|.||-..+.+ ++++++..+++++.+++ ....-..++++++
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i 50 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVI 50 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcc
Confidence 45677777666654 89999999999988653 2233344555554
No 383
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=38.68 E-value=1.7e+02 Score=28.11 Aligned_cols=52 Identities=13% Similarity=0.301 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.++.+.++..++.+++.+|-+ .+.+.++...|.+.|+...++..|.++-+.+
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~----E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYD----EPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred cccHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 345788899999998887633 5777899999999999999999999887753
No 384
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=38.54 E-value=6.1e+02 Score=28.44 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHH
Q 014255 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFK 137 (428)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr 137 (428)
.++++.|.+.++.|-+.-.+- .+..++.+..++..... |+ +.+-.-..+.+-+-.++.+ +-+|-+
T Consensus 761 ~nmA~McVkT~RLDVAkVClG--------hm~~aRgaRAlR~a~q~----~~-e~eakvAvLAieLgMlEeA--~~lYr~ 825 (1416)
T KOG3617|consen 761 DNMASMCVKTRRLDVAKVCLG--------HMKNARGARALRRAQQN----GE-EDEAKVAVLAIELGMLEEA--LILYRQ 825 (1416)
T ss_pred HHHHHHhhhhccccHHHHhhh--------hhhhhhhHHHHHHHHhC----Cc-chhhHHHHHHHHHhhHHHH--HHHHHH
Confidence 567899999999988775543 33445556666655542 22 2222222333323333332 223333
Q ss_pred HhH--HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014255 138 TNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (428)
Q Consensus 138 ~~~--~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a 208 (428)
+.. -|-++|-..|.+++|.++-+.= |. -++-..|-.-++...+.+|.+.|.++|+++
T Consensus 826 ckR~DLlNKlyQs~g~w~eA~eiAE~~-----------DR---iHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 826 CKRYDLLNKLYQSQGMWSEAFEIAETK-----------DR---IHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhhc-----------cc---eehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 322 3556677778888887654321 21 233344555556666777888888888776
No 385
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=38.47 E-value=86 Score=32.91 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.++++++|...|++.++.+++ .-++..+++++...|+++++.+.|.+-...-
T Consensus 432 ~~g~~~~A~~~l~rAl~L~ps-----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLEMS-----WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcCCHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 367899999999999988752 3588889999999999999999998876654
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.44 E-value=1.5e+02 Score=21.21 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=22.9
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
-.+....-+++.|++++|.+++.++...+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34466777899999999999999998775
No 387
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=38.26 E-value=72 Score=25.03 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=30.5
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
++.+.-+-.=.-..||..+++|.++|+..+-++...|.|.
T Consensus 13 L~hl~~~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLle 52 (92)
T PF10007_consen 13 LQHLKKAGPDYAKSIARRLKIPLEEVREALEKLEEMGLLE 52 (92)
T ss_pred HHHHHHHCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 3333333333456789999999999999999999999873
No 388
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.19 E-value=3.9e+02 Score=26.00 Aligned_cols=126 Identities=15% Similarity=0.200 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCCh
Q 014255 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (428)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~ 112 (428)
+.-+..|++.++.+++. .+.+....+++.+..+.+++.+-.+.++... +. +..--.+-+.-....+.. -+.
T Consensus 48 E~klsilerAL~~np~~----~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~-~~~LW~~yL~~~q~~~~~---f~v 118 (321)
T PF08424_consen 48 ERKLSILERALKHNPDS----ERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PG-SPELWREYLDFRQSNFAS---FTV 118 (321)
T ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CC-ChHHHHHHHHHHHHHhcc---CcH
Confidence 55667777777776533 4556666777777778888888888888875 43 222233333333333322 236
Q ss_pred hHHHHHHHHHHHHHHHhhh------------hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 113 SLLREFYQTTLKALEEAKN------------ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 113 ~~~~~~~~~~le~l~~~~~------------~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
+.+...|..|+..+..... +...+.+-++++.+..+.|-.+.|..+++-+.....
T Consensus 119 ~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 119 SDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6678888888888776433 335568888999999999999999988888887654
No 389
>PF14493 HTH_40: Helix-turn-helix domain
Probab=37.95 E-value=40 Score=26.11 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=30.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCc-ee
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNR-ID 386 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~-i~ 386 (428)
.-.++++||+.-++++.-|+..|++++..|. ++
T Consensus 12 ~G~si~eIA~~R~L~~sTI~~HL~~~~~~g~~~~ 45 (91)
T PF14493_consen 12 KGLSIEEIAKIRGLKESTIYGHLAELIESGEPLD 45 (91)
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHhCCCCC
Confidence 4679999999999999999999999999998 44
No 390
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=37.77 E-value=84 Score=28.90 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEE
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ 388 (428)
|+.+++--..+|..+||+.||++...|-..+-.+..+|.+...
T Consensus 16 il~lL~~~g~~sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~ 58 (218)
T COG2345 16 ILELLKKSGPVSADELAEELGISPMAVRRHLDDLEAEGLVEVE 58 (218)
T ss_pred HHHHHhccCCccHHHHHHHhCCCHHHHHHHHHHHHhCcceeee
Confidence 4455555678999999999999999999999999999999877
No 391
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.68 E-value=2.4e+02 Score=23.52 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=71.0
Q ss_pred cccCCCCHHHHHHHHHHhhcCC---C--c-cchhhHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 014255 25 KGLVETDPEGALAGFAEVVAME---P--E-KAEWGFKALKQ--TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (428)
Q Consensus 25 k~~~~~~~~~Ai~~~~~ii~~~---~--~-~~~~~~k~l~~--l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (428)
+.+..+-+++|-..+.+.++.. | + -+..+|.++-+ |...+...|+|++.++--..-+.+|++.-
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG-------- 89 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG-------- 89 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc--------
Confidence 4555666888888888887632 1 1 23346776665 56789999999999999998888883320
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
+ ++ ..++|+|......-|.-+...|..++|++.++..-..
T Consensus 90 ------------E----------------L~-qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 90 ------------E----------------LH-QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -----------------------------TT-STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ------------c----------------cc-cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 1 01 1367899988888888899999999998776655443
No 392
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=37.66 E-value=47 Score=26.48 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=33.0
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHHHHcCce
Q 014255 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (428)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i 385 (428)
++..+|+.+.+|++.|++.+.|.+.+-.+|..|.|
T Consensus 50 Kk~d~Is~sq~~e~tg~~~~~V~~al~~Li~~~vI 84 (100)
T PF04492_consen 50 KKMDRISNSQIAEMTGLSRDHVSKALNELIRRGVI 84 (100)
T ss_pred CccceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 55679999999999999999999999999999998
No 393
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=37.52 E-value=2.3e+02 Score=23.26 Aligned_cols=44 Identities=7% Similarity=-0.036 Sum_probs=36.7
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
..+..+||+.++++..-|-+.|..|-..|.|..+-+-..-...+
T Consensus 30 ~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l 73 (117)
T PRK10141 30 ELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRL 73 (117)
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEE
Confidence 57888999999999999999999999999998877644433333
No 394
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=37.14 E-value=4.9e+02 Score=26.89 Aligned_cols=103 Identities=8% Similarity=-0.057 Sum_probs=63.3
Q ss_pred hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 130 ~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
+++.+|+ .--|+++...|+.++|.+.+++.-... .+ ++....-.+...+-.+..+.||.+|..++....
T Consensus 264 P~s~lfl---~~~gR~~~~~g~~~~Ai~~~~~a~~~q------~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 264 PNSALFL---FFEGRLERLKGNLEEAIESFERAIESQ------SE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred CCcHHHH---HHHHHHHHHhcCHHHHHHHHHHhccch------hh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 4555653 356788888999999999999654211 11 123333334445566788899999988877665
Q ss_pred hhhccCCChhhHHHHHHhhhHhHHhhhcH-------HHHHHHHHHH
Q 014255 210 AIKSAIPHPRIMGIIRECGGKMHMAERQW-------ADAATDFFEA 248 (428)
Q Consensus 210 ~~~~~i~~p~~~~~i~~~~g~~~~~~~~y-------~~A~~~f~ea 248 (428)
+.++ --.+.+....|..+...++- ++|...|.++
T Consensus 333 ~~s~-----WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 333 KESK-----WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hccc-----cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 4221 12444555555555555555 6666666665
No 395
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.66 E-value=30 Score=28.41 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEec
Q 014255 339 KNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 339 ~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
+..+...|.+++.+--+=.|++||-.=-=-..-||..|.+|+.-|.|.+||+.
T Consensus 39 ~e~r~~~lsQvLdqqAr~RLsrlAlvkpekAq~VE~~lirma~~gQvs~Kise 91 (129)
T KOG3431|consen 39 EEMRQSMLSQVLDQQARERLSRLALVKPEKAQAVENYLIRMAQTGQVSHKISE 91 (129)
T ss_pred HHHHHhHHHHHhhHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCCccccccH
Confidence 34444555666666555555555521111235799999999999999999874
No 396
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=36.52 E-value=3.9e+02 Score=29.15 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=43.0
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
+|+..|...|+-.+|...+++-.+-.++. +.+...-+-+....|+++.|..+|.+-....
T Consensus 558 Nls~ayi~~~~k~ra~~~l~EAlKcn~~~------------w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 558 NLSTAYIRLKKKKRAFRKLKEALKCNYQH------------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhHHHHHHhhhHHHHHHHHHHhhcCCCC------------CeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 67888888899899999998888875432 2333333446678899999888888764433
No 397
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.35 E-value=4.9e+02 Score=26.64 Aligned_cols=165 Identities=10% Similarity=0.150 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
.-.+..++++++..|+++++.-.+.+.+..- + +..+.+..-.-.+.... ..+....+..-.....+- +..
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-p-----y~i~~MD~Ya~LL~~eg--~~e~~~~L~~~Lf~~~~~-ta~- 301 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-P-----DNVEAMDLYAVLLGQEG--GCEQDSALMDYLFAKVKY-TAS- 301 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-h-----hhhhhHHHHHHHHHhcc--CHhhHHHHHHHHHhhhhc-chh-
Confidence 4556667777777777777776666654432 2 12222221111111101 122222222222221110 011
Q ss_pred HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014255 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 134 l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (428)
-|| =-+.+.++..+|..|+.+-.+.-.. + .-.++-++...++....|....|...++.|..+..
T Consensus 302 ~wf----V~~~~l~~~K~~~rAL~~~eK~I~~--------~----~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 302 HWF----VHAQLLYDEKKFERALNFVEKCIDS--------E----PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred hhh----hhhhhhhhhhhHHHHHHHHHHHhcc--------C----cccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 122 1124455667777777665554333 1 12345666667777777888888777777764321
Q ss_pred cCCChhhHHHHHHhhhHhHH--hhhcHHHHHHHHHHHHHhh
Q 014255 214 AIPHPRIMGIIRECGGKMHM--AERQWADAATDFFEAFKNY 252 (428)
Q Consensus 214 ~i~~p~~~~~i~~~~g~~~~--~~~~y~~A~~~f~ea~~~~ 252 (428)
..++.+.|.+|. ..+.+++|.-.=-+++.++
T Consensus 366 --------~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 366 --------YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred --------hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 235556666554 5777777766666665554
No 398
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=36.15 E-value=36 Score=23.44 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=19.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHH
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVS 378 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~ 378 (428)
.+++.++|+.+|++..++-..+.+
T Consensus 3 ~i~V~elAk~l~v~~~~ii~~l~~ 26 (54)
T PF04760_consen 3 KIRVSELAKELGVPSKEIIKKLFK 26 (54)
T ss_dssp EE-TTHHHHHHSSSHHHHHHHH-H
T ss_pred ceEHHHHHHHHCcCHHHHHHHHHH
Confidence 578999999999999998887744
No 399
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=35.92 E-value=1e+02 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.5
Q ss_pred cchhhHHhHhCCChHHHHHHHHH
Q 014255 356 IRIPFISKELNVPEKDVEQLLVS 378 (428)
Q Consensus 356 I~l~~iA~~l~l~~~~vE~~l~~ 378 (428)
.++.++|+.+|++.+.|...+-+
T Consensus 28 ~s~~~vA~~~~vs~~TV~ri~~~ 50 (52)
T PF13542_consen 28 RSFKDVARELGVSWSTVRRIFDR 50 (52)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHh
Confidence 69999999999999999887654
No 400
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.84 E-value=4.1e+02 Score=29.23 Aligned_cols=127 Identities=16% Similarity=0.119 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH--hcC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF--VSG 106 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~--~~~ 106 (428)
...|++|++.-+......+.. ...+.=+..+..+.-.|+|++|-.....+.. ..+...+..|....+. +..
T Consensus 369 ~k~yeeAl~~~k~~~~~~~~~--~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 369 KKKYEEALDAAKASIGNEERF--VIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred hhHHHHHHHHHHhccCCcccc--chHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhccccccch
Confidence 344688888877764443211 1233334455666778888888765554432 2444444444443221 111
Q ss_pred ----CCCCChhHHHHHHHHHHHH---------------------------------HHHhhhhhHHHHHhHHHHHHHHhh
Q 014255 107 ----SASQNFSLLREFYQTTLKA---------------------------------LEEAKNERLWFKTNLKLCKIWFDM 149 (428)
Q Consensus 107 ----~~~~~~~~~~~~~~~~le~---------------------------------l~~~~~~kl~lr~~~~La~l~~~~ 149 (428)
.|..+..+...+|++++-. ++.....+ ++.--||.+|+..
T Consensus 442 Ia~~lPt~~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~---~L~e~La~LYl~d 518 (846)
T KOG2066|consen 442 IAPYLPTGPPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSEST---ALLEVLAHLYLYD 518 (846)
T ss_pred hhccCCCCCcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccch---hHHHHHHHHHHHc
Confidence 1222222233344443321 11111111 2222399999999
Q ss_pred ccHHHHHHHHHHHHhh
Q 014255 150 GEYGRMSKILKELHKS 165 (428)
Q Consensus 150 g~~~~A~~~l~el~~~ 165 (428)
|+|.+|.+++-.++..
T Consensus 519 ~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 519 NKYEKALPIYLKLQDK 534 (846)
T ss_pred cChHHHHHHHHhccCh
Confidence 9999999998887754
No 401
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=35.67 E-value=3.9e+02 Score=25.28 Aligned_cols=106 Identities=10% Similarity=0.082 Sum_probs=64.1
Q ss_pred HHhHHHHHHHHhhc-cHHHHHHHHHHHHhhccCCCC----CcchhhhhhHHHHHHHHHHHHHhhcCHH---HHHHHHHHH
Q 014255 137 KTNLKLCKIWFDMG-EYGRMSKILKELHKSCQREDG----TDDQKKGSQLLEVYAIEIQMYTETKNNK---KLKQLYQKA 208 (428)
Q Consensus 137 r~~~~La~l~~~~g-~~~~A~~~l~el~~~~~~~~~----~~d~~~~~~~~e~~l~e~~l~~~~~d~~---ka~~~l~~a 208 (428)
++.+..|.-.+..+ ++++|..+|++....+..++. +.+. ......++...++.|+..++.. +|..+++.+
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~--~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l 113 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG--SELRLSILRLLANAYLEWDTYESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH--HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 77788888888899 999999999999988754211 1121 2456777777788888887754 444444333
Q ss_pred HhhhccCCC-hhhH-HHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 209 LAIKSAIPH-PRIM-GIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 209 ~~~~~~i~~-p~~~-~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
.+..++ |.+. -.++.+.+ ..++..+.+.+.....+.
T Consensus 114 ---~~e~~~~~~~~~L~l~il~~-----~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 114 ---ESEYGNKPEVFLLKLEILLK-----SFDEEEYEEILMRMIRSV 151 (278)
T ss_pred ---HHhCCCCcHHHHHHHHHHhc-----cCChhHHHHHHHHHHHhc
Confidence 344444 3332 23333333 445555555555554443
No 402
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=35.63 E-value=2.3e+02 Score=22.57 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=37.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
..++..+||..++++..-|-..|.+|...|.|.=.-|..|+.
T Consensus 42 ~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~R 83 (109)
T TIGR01889 42 GKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDER 83 (109)
T ss_pred CcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccCC
Confidence 579999999999999999999999999999998767776653
No 403
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=35.50 E-value=6.1e+02 Score=27.53 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=21.2
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
+|.....+++-.|...++..+|.+|.+.|..+
T Consensus 799 hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 799 HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 45555555555566666777778887777666
No 404
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=35.40 E-value=67 Score=24.28 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=24.6
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
|++.+.-=.-|+...||..+|.+.++|...+..+=
T Consensus 29 LLr~LA~G~PVt~~~LA~a~g~~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKGQPVTVEQLAAALGWPVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTTTS-B-HHHHHHHHT--HHHHHHHHHH-T
T ss_pred HHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHhCC
Confidence 45555456789999999999999999999998873
No 405
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=35.39 E-value=1.2e+02 Score=30.82 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=49.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccc--hHHHHH---------HHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGM--KKYTAI---------DKWNSQLRKKR 422 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~--~~~~~l---------~~w~~~v~~l~ 422 (428)
..++.++|++.+++|.+.++..+.+|...|.|. + +...+.+-..++++.+ +.++.+ ..|..+++.++
T Consensus 309 ~~~t~~~La~~l~~~~~~v~~iL~~L~~agLI~-~-~~~g~~~l~rd~~~itL~dv~~~~~~~~~~~~~~~~~~~~~~~l 386 (412)
T PRK04214 309 KALDVDEIRRLEPMGYDELGELLCELARIGLLR-R-GERGQWVLARDLDSVPLAELYELFVLRPLPCRDDHVGQAADAAL 386 (412)
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCeE-e-cCCCceEecCCHHhCcHHHHHHhCCCCcCCCccchHHHHHHHHH
Confidence 477999999999999999999999999999996 3 2233465555554432 223321 15777777777
Q ss_pred Hhhh
Q 014255 423 RDNQ 426 (428)
Q Consensus 423 ~~~~ 426 (428)
++-+
T Consensus 387 ~~~~ 390 (412)
T PRK04214 387 TQLR 390 (412)
T ss_pred HHHH
Confidence 6643
No 406
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=35.27 E-value=1.3e+02 Score=27.07 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+.+++.|+..-+..-+.|=.+++-..||+.||+|..-|-.-|..|-.+|.+.- -+..|+++..
T Consensus 14 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVReAL~~L~~eGlv~~--~~~~G~~V~~ 76 (212)
T TIGR03338 14 TLVQDEIERAILSGELPPGAKLNESDIAARLGVSRGPVREAFRALEEAGLVRN--EKNRGVFVRE 76 (212)
T ss_pred HHHHHHHHHHHHcCCCCCCCEecHHHHHHHhCCChHHHHHHHHHHHHCCCEEE--ecCCCeEEec
Confidence 45677777766666778888999999999999999999999999999999864 4455666654
No 407
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=34.32 E-value=49 Score=22.99 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=28.2
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHH
Q 014255 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVK 62 (428)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~ 62 (428)
.||-|=+. +-+++++|.+....+++.+|++.+ .+.++.+++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q--a~~L~~~i~ 45 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ--AQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH--HHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH--HHHHHHHHH
Confidence 45555443 456899999999999999987655 566666553
No 408
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=34.30 E-value=61 Score=21.45 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.4
Q ss_pred ccccccchhhHHhHhCCChHHH
Q 014255 351 KPYTRIRIPFISKELNVPEKDV 372 (428)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~~v 372 (428)
+.|..+++..||+..|++...+
T Consensus 12 ~G~~~~s~~~Ia~~~gvs~~~~ 33 (47)
T PF00440_consen 12 KGYEAVSIRDIARRAGVSKGSF 33 (47)
T ss_dssp HHTTTSSHHHHHHHHTSCHHHH
T ss_pred hCHHhCCHHHHHHHHccchhhH
Confidence 5799999999999999997654
No 409
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=34.10 E-value=40 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.9
Q ss_pred cccchhhHHhHhCCChHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLL 376 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l 376 (428)
+.++.+.+|..||++++++|..+
T Consensus 22 ~~ls~~~ia~dL~~s~~~le~vL 44 (89)
T PF10078_consen 22 SGLSLEQIAADLGTSPEHLEQVL 44 (89)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 67899999999999999999765
No 410
>PRK03837 transcriptional regulator NanR; Provisional
Probab=33.91 E-value=1.5e+02 Score=27.14 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+.+++.|++..+..-+.|=.++ +-..||+.+|+|..-|-.-|..+-.+|.|.-+ +..|+.+..
T Consensus 16 ~~v~~~l~~~I~~g~l~pG~~Lp~E~~Lae~~gVSRt~VREAL~~L~~eGlv~~~--~~~G~~V~~ 79 (241)
T PRK03837 16 EEVEERLEQMIRSGEFGPGDQLPSERELMAFFGVGRPAVREALQALKRKGLVQIS--HGERARVSR 79 (241)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--cCCceeEec
Confidence 4567777777777777888899 89999999999999999999999999998653 555665543
No 411
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=33.04 E-value=2.9e+02 Score=23.01 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=37.1
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEE
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v 396 (428)
.++.++||+.++++..-+-..|-+|...|.|.-.-|..++..
T Consensus 46 ~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~ 87 (144)
T PRK03573 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRA 87 (144)
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcCe
Confidence 367899999999999999999999999999998888777643
No 412
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=32.93 E-value=1.4e+02 Score=32.85 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=38.1
Q ss_pred HhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 348 ~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
..++--..|++.++|+.+++|.+.+...|..- ..+.|+|++| .|.++.
T Consensus 127 e~LqE~G~isI~eLa~~~~Lpsefl~~~l~~r-lG~iI~g~~~--g~~lyT 174 (803)
T PLN03083 127 ERLQECSQIALAELARQLQVGSELVTSMLEPR-LGTIVKARLE--GGQLYT 174 (803)
T ss_pred HHHHHcCcChHHHHHHhcCChHHHHHHHHHHH-hccceEEEec--CCEEec
Confidence 33445678999999999999999999999887 4478899994 455544
No 413
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=32.68 E-value=1.6e+02 Score=27.43 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 334 IEDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 334 ~~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
.+.+++.|+..-+..-+.|=.++ +-..||+.||+|..-|-.-+..|-.+|.|.- .+..|+.+..
T Consensus 11 ~~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~--~~~~G~~V~~ 75 (257)
T PRK10225 11 YQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEV--RRGAGIYVLD 75 (257)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE--ecCCEEEEeC
Confidence 35677777777777777888899 6999999999999999999999999999873 3445665544
No 414
>PRK04239 hypothetical protein; Provisional
Probab=32.46 E-value=33 Score=27.84 Aligned_cols=51 Identities=29% Similarity=0.463 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccccccchhhHHhHhCCC-hHHHHHHHHHHHHcCceeEEEec
Q 014255 340 NVRTQVLLKLIKPYTRIRIPFISKELNVP-EKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 340 ~i~~~~l~~~~~pYs~I~l~~iA~~l~l~-~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
..+...|.+++.|--+=.++.|+- ..-+ ...||..|.+|...|.|.++||-
T Consensus 37 ~qk~~iL~qiLt~eAreRL~rI~l-vkPe~A~~VE~~liqlAq~G~i~~ki~e 88 (110)
T PRK04239 37 AQKQAILRQILTPEARERLNRIKL-VKPEFAEQVEQQLIQLAQSGRIQGPIDD 88 (110)
T ss_pred HHHHHHHHHHCCHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 345556788887755545555441 1111 35899999999999999999974
No 415
>PLN02789 farnesyltranstransferase
Probab=32.37 E-value=4.8e+02 Score=25.41 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHhhcCCCcc-chhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHhc
Q 014255 29 ETDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTYIKSAVTRNYSEKCINN-IMDFVS 105 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~-~~~~~k~l~~l~~l~~~~~-~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~-il~~~~ 105 (428)
....+.|++.+.++|..+|++ ..|..| +.++...| +++++++.+.+++... +|++.+=--+. ++..+.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R-----~~iL~~L~~~l~eeL~~~~~~i~~n----pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFR-----RLCLEALDADLEEELDFAEDVAEDN----PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHH-----HHHHHHcchhHHHHHHHHHHHHHHC----CcchHHhHHHHHHHHHcC
Confidence 345788999999988888754 455444 33444556 6789999999888764 34333322222 222222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 106 ~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
. +. .+....+++.+++. + ..+--.|. ..+-++...|+|++|++...++...
T Consensus 121 ~-~~--~~~el~~~~kal~~-d-pkNy~AW~----~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 121 P-DA--ANKELEFTRKILSL-D-AKNYHAWS----HRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred c-hh--hHHHHHHHHHHHHh-C-cccHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1 10 11223344333321 1 11222332 3334455568899999999888776
No 416
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=31.99 E-value=2.7e+02 Score=24.88 Aligned_cols=48 Identities=8% Similarity=-0.135 Sum_probs=39.3
Q ss_pred hhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEE
Q 014255 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (428)
Q Consensus 349 ~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v 396 (428)
++.....++.++||+.++++..-+=..|-+|-..|.|.=..|..++..
T Consensus 53 ~L~~~~~itq~eLa~~l~l~~sTvtr~l~rLE~kGlI~R~~~~~DrR~ 100 (185)
T PRK13777 53 IAYHLKGASISEIAKFGVMHVSTAFNFSKKLEERGYLTFSKKEDDKRN 100 (185)
T ss_pred HHHhCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCe
Confidence 333345789999999999999999999999999999987776666543
No 417
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=31.89 E-value=4.5e+02 Score=24.90 Aligned_cols=121 Identities=13% Similarity=0.204 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR-LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~-~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (428)
.++|-+.|.+..+.. .. +...+...+.+-+. .++.+.+...|+..++.+ +. . ...+..-++++....+
T Consensus 17 ~~~aR~vF~~a~~~~--~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~-~----~~~~~~Y~~~l~~~~d- 85 (280)
T PF05843_consen 17 IEAARKVFKRARKDK--RC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PS-D----PDFWLEYLDFLIKLND- 85 (280)
T ss_dssp HHHHHHHHHHHHCCC--CS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHcCC--CC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CC-C----HHHHHHHHHHHHHhCc-
Confidence 688888999986432 12 34677888999777 567777999999999988 54 2 2344455555544333
Q ss_pred ChhHHHHHHHHHHHHHHHhh-hhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccC
Q 014255 111 NFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~-~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~ 168 (428)
.+....+++.++..+-... -+.+| .+..++-...|+++.+.++.+.....+..
T Consensus 86 -~~~aR~lfer~i~~l~~~~~~~~iw----~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 86 -INNARALFERAISSLPKEKQSKKIW----KKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHHHCHHHH----HHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred -HHHHHHHHHHHHHhcCchhHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 4456666666654322211 12243 46677777889999999988888887653
No 418
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=31.67 E-value=1.4e+02 Score=27.30 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+..++.|+..-+..-+.|=.++ +-..||+.||+|-.-|-.-|..+-.+|.|. +-+..|+.+..
T Consensus 9 ~~v~~~l~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~Le~eGlV~--~~~~~G~~V~~ 72 (235)
T TIGR02812 9 GFAEEYIVESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLT--IQHGKPTKVNN 72 (235)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE--EeCCCccEecC
Confidence 3456666666666667888999 899999999999999999999999999987 34445665543
No 419
>PF13518 HTH_28: Helix-turn-helix domain
Probab=31.65 E-value=1e+02 Score=20.44 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=28.7
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEe
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ID 390 (428)
..+...+|..+|++...|..++.+.=..| +.|-.+
T Consensus 12 g~s~~~~a~~~gis~~tv~~w~~~y~~~G-~~~l~~ 46 (52)
T PF13518_consen 12 GESVREIAREFGISRSTVYRWIKRYREGG-IEGLKP 46 (52)
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHhcC-HHHhcc
Confidence 44999999999999999999999888777 455444
No 420
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=31.60 E-value=2.3e+02 Score=27.79 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 59 QTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
++.+.|.+.|.|++++++.....+..
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~ 136 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQ 136 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHH
Confidence 45788999999999999888777664
No 421
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.57 E-value=48 Score=25.62 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.3
Q ss_pred cccchhhHHhHhCCChHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLL 376 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l 376 (428)
+++|.+.||..|++++..+|+.+
T Consensus 22 ~~LS~~~iA~~Ln~t~~~lekil 44 (97)
T COG4367 22 CPLSDEEIATALNWTEVKLEKIL 44 (97)
T ss_pred ccccHHHHHHHhCCCHHHHHHHH
Confidence 78899999999999999999877
No 422
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.56 E-value=3.2e+02 Score=25.77 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhc----cCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 201 LKQLYQKALAIKS----AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 201 a~~~l~~a~~~~~----~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
.+.++++|.+-.. ...+|.++ ..-|.++..+++|..|..+|.-+
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH----~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELH----HLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHH----HHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHH----HHHHHHHHhhccHHHHHHHHHhc
Confidence 4456666654442 12345544 44488888999999999998765
No 423
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=31.45 E-value=69 Score=28.37 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=37.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
.++-.+||..+|++.+.|-+.+.+|-.+|.|. ...|.|.+.+.+
T Consensus 149 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~----~~~~~i~I~d~~ 192 (202)
T PRK13918 149 YATHDELAAAVGSVRETVTKVIGELSREGYIR----SGYGKIQLLDLK 192 (202)
T ss_pred cCCHHHHHHHhCccHHHHHHHHHHHHHCCCEE----cCCCEEEEECHH
Confidence 57889999999999999999999999988774 455778887664
No 424
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=31.25 E-value=2.3e+02 Score=29.07 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=16.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
+||...+..|+++-|.+.+++.+..
T Consensus 352 ~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 352 QLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 6677777777777777776666544
No 425
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=31.05 E-value=52 Score=30.02 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
+++++.+||+.||++..-+...|.++.
T Consensus 177 R~~~l~dLA~~lGISkst~~ehLRrAe 203 (215)
T COG3413 177 RRVSLKDLAKELGISKSTLSEHLRRAE 203 (215)
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 899999999999999887777776654
No 426
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=30.88 E-value=66 Score=27.26 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=29.1
Q ss_pred HHhhccc--cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEe
Q 014255 347 LKLIKPY--TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (428)
Q Consensus 347 ~~~~~pY--s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ID 390 (428)
..+++-+ ...++..|++.+|++++.| .++|.+|+|.-.-+
T Consensus 36 ~~yLr~~p~~~ati~eV~e~tgVs~~~I----~~~IreGRL~~~~~ 77 (137)
T TIGR03826 36 YKFLRKHENRQATVSEIVEETGVSEKLI----LKFIREGRLQLKHF 77 (137)
T ss_pred HHHHHHCCCCCCCHHHHHHHHCcCHHHH----HHHHHcCCeeccCC
Confidence 4455444 5589999999999997654 56788899865443
No 427
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=30.25 E-value=17 Score=38.31 Aligned_cols=98 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
.+.-++.+++.|++..|..++.++....-. + ....+..+..+++....|+...|...+.... ....++
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~-----~----~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~---~~~l~~ 94 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLS-----P----SQQARYQLLRARLALAQGDPEQALSLLNAQD---LWQLPP 94 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCC-----h----HHHHHHHHHHHHHHHhcCCHHHHHHHhccCC---cccCCH
Confidence 347788899999999999999999844211 1 3456788888999999999999988876421 111223
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
..+..+....+.++...+++..|.+.....
T Consensus 95 ~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 95 EQQARYHQLRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344556666777777888888888877665
No 428
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=30.13 E-value=1.2e+02 Score=20.00 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
.-.+..+||+.+|++...|...+.++..
T Consensus 17 ~g~s~~eia~~l~is~~tv~~~~~~~~~ 44 (58)
T smart00421 17 EGLTNKEIAERLGISEKTVKTHLSNIMR 44 (58)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5579999999999999999998887643
No 429
>PHA00738 putative HTH transcription regulator
Probab=30.01 E-value=3e+02 Score=22.29 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=48.6
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHHHHHHHHHHHHH
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRKKRR 423 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~ 423 (428)
..+..+|++.++++..-|-+.|.-|-..|.|..+-+-..-+..+.+.. ..++-++.=.....+|.+
T Consensus 26 ~~~V~eLae~l~lSQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~---~~~~l~~~~~~~~~~~~~ 91 (108)
T PHA00738 26 ILSASLISHTLLLSYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENS---KEIQILNSELEGFKKLSE 91 (108)
T ss_pred CccHHHHHHhhCCCHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCc---cHHHHHhhHHHHHHhhcc
Confidence 478889999999999999999999999999987765544444444443 456666665555555543
No 430
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=29.92 E-value=4.7e+02 Score=24.47 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=57.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHhHH-hhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHH
Q 014255 300 NLIAAYQRNEIIEFEKILKSNRK-TIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVS 378 (428)
Q Consensus 300 ~L~~af~~~dl~~f~~~l~~~~~-~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~ 378 (428)
.|+.......+.+|...|+.... .+..+|++ +|.-.|-+.++|-+.-+++..=+++..+.-.-..++=.+-|.+.|+.
T Consensus 106 nLL~LLsqNRiaeFHteLe~lp~~~l~~~~~I-~~~v~LEq~~MEGaYnKv~~a~~s~p~~~y~~FmdIl~~tiRdEIA~ 184 (260)
T KOG3151|consen 106 NLLYLLSQNRIAEFHTELELLPKKILQHNPYI-SHPVSLEQSLMEGAYNKVLSAKQSIPSEEYTYFMDILLDTIRDEIAG 184 (260)
T ss_pred HHHHHHHhccHHHHHHHHHhccHHHhhccchh-hhHHHHHHHHHhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888899888877543 45555665 56677889999999888877666777666666666666666666666
Q ss_pred HHHc
Q 014255 379 LILD 382 (428)
Q Consensus 379 lI~~ 382 (428)
+|..
T Consensus 185 c~EK 188 (260)
T KOG3151|consen 185 CIEK 188 (260)
T ss_pred HHHH
Confidence 6653
No 431
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=29.83 E-value=90 Score=28.59 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 334 IEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 334 ~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
.+.+++.|++.-+..-+.|=.+++-..||+.||+|.--|-.-|.++-.+|.|.-. ...|.++.
T Consensus 18 ~~~vy~~Lr~~Il~g~l~pG~~l~e~~La~~~gvSrtPVReAL~rL~~eGlv~~~--p~rG~~V~ 80 (230)
T COG1802 18 ADQVYEELREAILSGELAPGERLSEEELAEELGVSRTPVREALRRLEAEGLVEIE--PNRGAFVA 80 (230)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCccHHHHHHHhCCCCccHHHHHHHHHHCCCeEec--CCCCCeeC
Confidence 4556777777777777889999999999999999999999999999999998766 33444443
No 432
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=29.67 E-value=1.1e+02 Score=27.77 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEE
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ 388 (428)
+.+++.|++.-+..-+.|=.+++-..||+.||+|-.-|-.-|..+-.+|.+.-+
T Consensus 14 e~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGLV~~~ 67 (221)
T PRK11414 14 LQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITPVREALLRLVSVNALSVA 67 (221)
T ss_pred HHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCchhHHHHHHHHHHCCCEEec
Confidence 556777777777777788888889999999999999999999999999998743
No 433
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=29.49 E-value=4.9e+02 Score=24.62 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE-TKNNKKLKQLYQKALA 210 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~-~~d~~ka~~~l~~a~~ 210 (428)
.+.++....+..+.|.++..+.++. . ....++|..-+.+... .+|...|...++.+.+
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~--------~----~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk 64 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKD--------K----RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK 64 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC--------C----CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcC--------C----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3344444445556666666666522 0 1223455555555444 3445556666666644
No 434
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=28.84 E-value=1.2e+02 Score=27.06 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=34.8
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
+++-.+||+.+|++.+.+-+.+.+|-.+|.|. ...+.|.+.++
T Consensus 168 ~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~----~~~~~i~i~~~ 210 (211)
T PRK11753 168 KITRQEIGRIVGCSREMVGRVLKMLEDQGLIS----AHGKTIVVYGT 210 (211)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEecC
Confidence 67789999999999999999999999999774 22455666543
No 435
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=28.80 E-value=91 Score=22.98 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVS 378 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~ 378 (428)
+.-+...||+.+|+++++|...+..
T Consensus 19 r~Pt~eEiA~~lgis~~~v~~~l~~ 43 (78)
T PF04539_consen 19 REPTDEEIAEELGISVEEVRELLQA 43 (78)
T ss_dssp S--BHHHHHHHHTS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHcccHHHHHHHHHh
Confidence 5669999999999999999977764
No 436
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.63 E-value=4.8e+02 Score=24.17 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhcc-CC--ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 199 KKLKQLYQKALAIKSA-IP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 199 ~ka~~~l~~a~~~~~~-i~--~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
.+|..+|..|..++.. ++ +|...+..--++-.+|-..++...|+..--++|...
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 6789999999777665 43 576666554455555556778888887777776543
No 437
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=28.53 E-value=83 Score=28.14 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=32.0
Q ss_pred cchhhHHhHhCCC-hHHHHHHHHHHHHcCceeEEEecC
Q 014255 356 IRIPFISKELNVP-EKDVEQLLVSLILDNRIDGHIDQV 392 (428)
Q Consensus 356 I~l~~iA~~l~l~-~~~vE~~l~~lI~~g~i~g~IDq~ 392 (428)
.+..+||+.+|++ ..-|-..|.+|...|.|...-...
T Consensus 26 ~~~~ela~~~~~~s~~tv~~~l~~L~~~g~i~~~~~~~ 63 (199)
T TIGR00498 26 PSIREIARAVGLRSPSAAEEHLKALERKGYIERDPGKP 63 (199)
T ss_pred CcHHHHHHHhCCCChHHHHHHHHHHHHCCCEecCCCCC
Confidence 7899999999998 999999999999999987553333
No 438
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=28.45 E-value=1.4e+02 Score=21.12 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=30.9
Q ss_pred ccccchhhHHhHhCCChH-HHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 353 YTRIRIPFISKELNVPEK-DVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~-~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
-.-|+++.+.+.+|.+.. .....+.+++.+|.+ ...++.+.+++
T Consensus 18 ~~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll----~~~~~~l~lT~ 62 (66)
T PF06969_consen 18 NEGIDLSEFEQRFGIDFAEEFQKELEELQEDGLL----EIDGGRLRLTE 62 (66)
T ss_dssp HSEEEHHHHHHHTT--THHH-HHHHHHHHHTTSE----EE-SSEEEE-T
T ss_pred HCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCE----EEeCCEEEECc
Confidence 568899999999999854 448889999999876 34456666654
No 439
>PRK11050 manganese transport regulator MntR; Provisional
Probab=28.37 E-value=3.8e+02 Score=22.88 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=36.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
..++..+||+.++++...|-..+.+|...|.|.-+. .+.+.+++.
T Consensus 50 ~~~t~~eLA~~l~is~stVsr~l~~Le~~GlI~r~~---~~~v~LT~~ 94 (152)
T PRK11050 50 GEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMRP---YRGVFLTPE 94 (152)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec---CCceEECch
Confidence 568999999999999999999999999999876433 344566643
No 440
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.31 E-value=3.2e+02 Score=25.11 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=45.3
Q ss_pred ccCCCCHHHHHHHHHHhhcCCCc-cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 014255 26 GLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (428)
Q Consensus 26 ~~~~~~~~~Ai~~~~~ii~~~~~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~ 87 (428)
-++.++|++|...|...++.=|. ..+...-.+.+-+-...+.+.|+.+++-..+.+.+. +.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pt 166 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PT 166 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-ch
Confidence 46778899999999999987663 234344455556777888888998888888887765 54
No 441
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.28 E-value=2.7e+02 Score=24.31 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=45.1
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
.+...-...++..++..+|..++..-+ ...++.+....++...|++..|..+++...
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP------------~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRP------------EFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCC------------CchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 455555667799999999999999843 235677788899999999999999988753
No 442
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.58 E-value=82 Score=25.41 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (428)
-+..++.+|...|..++|+++..++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456688999999999999999998877
No 443
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=27.34 E-value=84 Score=25.70 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=37.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
..|++++||+.+..|.-.+-.+|-+|...|-|.=.--.+-| .+.+..
T Consensus 18 ~~vtl~elA~~l~cS~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~ 67 (115)
T PF12793_consen 18 VEVTLDELAELLFCSRRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLK 67 (115)
T ss_pred cceeHHHHHHHhCCCHHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEee
Confidence 58999999999999999999999999999999633333332 455543
No 444
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.34 E-value=1e+02 Score=20.18 Aligned_cols=28 Identities=11% Similarity=-0.045 Sum_probs=22.5
Q ss_pred chhhHHhHhCCChHHHHHHHHHHHHcCceeEE
Q 014255 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (428)
Q Consensus 357 ~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ 388 (428)
+++++|+.+|+++..+..+ +..|.+.+.
T Consensus 2 ~~~e~a~~~gv~~~tlr~~----~~~g~l~~~ 29 (49)
T cd04761 2 TIGELAKLTGVSPSTLRYY----ERIGLLSPA 29 (49)
T ss_pred cHHHHHHHHCcCHHHHHHH----HHCCCCCCC
Confidence 6789999999999988876 567777643
No 445
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=27.09 E-value=1.5e+02 Score=26.86 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=37.2
Q ss_pred hccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecC
Q 014255 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (428)
Q Consensus 350 ~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~ 392 (428)
.+.++-.+.++||+.+++++.-|+..+..+...|.+...++..
T Consensus 172 ~~g~~g~s~~eIa~~l~iS~~Tv~~~~~~~~~~~~~~~~~~~~ 214 (225)
T PRK10046 172 KEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHG 214 (225)
T ss_pred HcCCCCcCHHHHHHHhCccHHHHHHHHHHHHhCCeEEEEeecC
Confidence 3445557899999999999999999999999999998888763
No 446
>PRK11906 transcriptional regulator; Provisional
Probab=26.44 E-value=4.1e+02 Score=27.35 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
++.|+..|+..+..+|+. .-+....+-+++-.|+.+++.+.+.+.+..- +.-..+-+++-+++.|-.+|
T Consensus 354 ~~~a~~~f~rA~~L~Pn~----A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs----P~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDI----ASLYYYRALVHFHNEKIEEARICIDKSLQLE----PRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred hhhHHHHHHHHhhcCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----chhhHHHHHHHHHHHHcCCc
Confidence 567777777777776643 3445566777788888888888888876653 33344556666676665544
No 447
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=26.40 E-value=2.8e+02 Score=21.17 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=45.1
Q ss_pred cccchhhHHhHh-CCChHHHHHHHHHHHHcCceeEEEecCCC-EEEEccCC---ccchHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNR-LLERGDRS---KGMKKYTAIDKWNSQL 418 (428)
Q Consensus 354 s~I~l~~iA~~l-~l~~~~vE~~l~~lI~~g~i~g~IDq~~g-~v~~~~~~---~~~~~~~~l~~w~~~v 418 (428)
....|++|.+.+ +++...+-.-|..|...|.+.-.+..... .+...=.+ ........+.+|..+-
T Consensus 17 g~~rf~el~~~l~~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~~l~~l~~W~~~~ 86 (90)
T PF01638_consen 17 GPMRFSELQRRLPGISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLPVLEALEEWGEEH 86 (90)
T ss_dssp SSEEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHhcchhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHHHHHHHHHHHHHH
Confidence 678999999999 89999999999999999999877665443 23322111 1223455666777653
No 448
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=26.18 E-value=1.2e+02 Score=30.06 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHH
Q 014255 295 ILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQ 374 (428)
Q Consensus 295 ~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~ 374 (428)
-..+++..+.|+. .|+++...+..----||.+...+..=......-++.++.+-|..+.+ +..+-+..+++++|.
T Consensus 292 ~~~~ke~f~~Fn~----~fee~~~~q~~~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~~~-~~~Kyikyt~~~le~ 366 (371)
T PF03081_consen 292 RELLKEKFKKFNS----AFEEIYKAQKTWKVPDPELREELRREIKEKVVPAYRRFYERYRNSQF-NPEKYIKYTPEDLEN 366 (371)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHTT---S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCSS-SHCCC-SS-HHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHcCcceecCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCCCCccCHHHHHH
Confidence 3456666665553 46665555533333588887666555555556677777788888888 777778999999999
Q ss_pred HHHHH
Q 014255 375 LLVSL 379 (428)
Q Consensus 375 ~l~~l 379 (428)
.|.+|
T Consensus 367 ~l~~L 371 (371)
T PF03081_consen 367 MLNEL 371 (371)
T ss_dssp HHHTC
T ss_pred HHHcC
Confidence 88754
No 449
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=26.17 E-value=7.3e+02 Score=25.48 Aligned_cols=130 Identities=12% Similarity=0.147 Sum_probs=64.7
Q ss_pred HHHHhHHHHHHHHhhccHH-------HHHHHHHHHHhhccCC-CCCcchhhhhhHHHHHH--HHHHHHHhhcCHHHHHHH
Q 014255 135 WFKTNLKLCKIWFDMGEYG-------RMSKILKELHKSCQRE-DGTDDQKKGSQLLEVYA--IEIQMYTETKNNKKLKQL 204 (428)
Q Consensus 135 ~lr~~~~La~l~~~~g~~~-------~A~~~l~el~~~~~~~-~~~~d~~~~~~~~e~~l--~e~~l~~~~~d~~ka~~~ 204 (428)
|+++-++=|.-.+..|+|. .|+++..+.-...... +..+|. ..+.... -.+-.|+.+++..-|-.-
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di----~~vaSfIetklv~CYL~~rkpdlALnh 250 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDI----SSVASFIETKLVTCYLRMRKPDLALNH 250 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhH----HHHHHHHHHHHHHhhhhcCCCchHHHH
Confidence 5555555555555555555 4555555554443311 111221 1122211 123457788877665544
Q ss_pred HHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHHhh
Q 014255 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GNQRRIQCLKYLVLANMLM 274 (428)
Q Consensus 205 l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~-~~~~~~~~l~y~~L~~lL~ 274 (428)
..++...+.+.+.|. ++.+.++-...+|.+|++.+.-+---|.-. |+..+...+.-+..|+++.
T Consensus 251 ~hrsI~lnP~~frnH------LrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqamiE 315 (569)
T PF15015_consen 251 SHRSINLNPSYFRNH------LRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAMIE 315 (569)
T ss_pred HhhhhhcCcchhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHHHH
Confidence 444433322222222 222445555678999999888774445433 3445555555566676653
No 450
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=26.05 E-value=48 Score=26.80 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCceeEEEec
Q 014255 370 KDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 370 ~~vE~~l~~lI~~g~i~g~IDq 391 (428)
..||..|.+|...|.|.++||-
T Consensus 62 ~~VE~~Liqlaq~G~l~~kI~d 83 (107)
T PF01984_consen 62 RQVENQLIQLAQSGQLRGKIDD 83 (107)
T ss_dssp HHHHHHHHHHHHCTSSSS-B-H
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 5899999999999999999974
No 451
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=25.90 E-value=94 Score=20.75 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=23.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
.-.+..+||+.++++...|+..+.++..
T Consensus 14 ~~~s~~eia~~l~~s~~tv~~~~~~~~~ 41 (57)
T cd06170 14 EGKTNKEIADILGISEKTVKTHLRNIMR 41 (57)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5579999999999999999999877643
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.78 E-value=1.6e+02 Score=21.00 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 58 KQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
-|++.-|.+.|+++++.+++..+....
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 455677889999999999999998876
No 453
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=25.77 E-value=2.1e+02 Score=26.18 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 336 ~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
.+++.|+..-+..-..|=.++ +-..||+.||+|-.-|-.-|..|..+|.|.- -+..|+++.
T Consensus 11 ~~~~~l~~~I~~g~l~pG~~LPsE~eLae~~gVSRt~VReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T PRK04984 11 FAEEYIIESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_pred HHHHHHHHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCeeEeC
Confidence 345555555555556677889 7899999999999999999999999999974 445566664
No 454
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=25.65 E-value=2e+02 Score=22.28 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAY 77 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~ 77 (428)
.+++++|++.|..++..+++..+ -.+-+.++.++.-.|.-+-+..-|
T Consensus 35 ~g~~e~Al~~Ll~~v~~dr~~~~--~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 35 AGDYEEALDQLLELVRRDRDYED--DAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp TT-HHHHHHHHHHHHCC-TTCCC--CHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCccccc--cHHHHHHHHHHHHcCCCChHHHHH
Confidence 46799999999999998764322 345566777777777765544443
No 455
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.44 E-value=1e+02 Score=34.03 Aligned_cols=56 Identities=13% Similarity=0.266 Sum_probs=41.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
++|+..|+|.+|.+.- + ..|.....+....+..++.+++|..|++.+-+..+.|.+
T Consensus 366 k~yLd~g~y~kAL~~a---r------~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIA---R------TRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHhcchHHHHHHhc---c------CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 5688899999987652 2 125555556666788999999999999999888666654
No 456
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=25.43 E-value=1.7e+02 Score=27.86 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=37.7
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEec
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
.+..+.+| ++++.+.+.++++..-+-..+-++|..|.+.|+|--
T Consensus 185 ~l~a~T~P---t~l~~l~~~~~~~~~l~~~il~~Li~~~~l~G~i~G 228 (272)
T PF09743_consen 185 ALSAITRP---TPLSSLLKRYGFEEKLFQSILEELIKSGELPGSIVG 228 (272)
T ss_pred HHhcCccc---eEHHHHHHHhCCcHHHHHHHHHHHHhcCcceEEEEC
Confidence 34444555 789999999999999999999999999999999976
No 457
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=24.56 E-value=1.5e+02 Score=25.59 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=37.8
Q ss_pred hhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 349 ~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
+.+.--.+...+||+.+++++.-|-..+-+|-..|.+.=. +.|-+..++.
T Consensus 18 l~~~~~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~~~---~y~gi~LT~~ 67 (154)
T COG1321 18 LLEEKGFARTKDIAERLKVSPPSVTEMLKRLERLGLVEYE---PYGGVTLTEK 67 (154)
T ss_pred HHhccCcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeEEe---cCCCeEEChh
Confidence 3444467899999999999999999999999998875421 4455666643
No 458
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=24.19 E-value=4.4e+02 Score=22.68 Aligned_cols=111 Identities=9% Similarity=0.074 Sum_probs=63.6
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCC----------------------------CcchhhhhhHHHHHHHHHHH
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDG----------------------------TDDQKKGSQLLEVYAIEIQM 191 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~----------------------------~~d~~~~~~~~e~~l~e~~l 191 (428)
...|...+..|+.++|.+.|.+....+..... +++ .......+-....++-
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~-~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDD-YVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeec-cCChHHHHHHHHHHHH
Confidence 36788888999999999998888775442100 000 0012224445556667
Q ss_pred HHhhcCHHHHHHHHHHHHhhhcc-CC-ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 192 YTETKNNKKLKQLYQKALAIKSA-IP-HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 192 ~~~~~d~~ka~~~l~~a~~~~~~-i~-~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
.+..|+...|++.++.+..-..- .. -|.-+-.-....+.-.+.+|+|.+|..-+-.+.++
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 88889999999888765311110 00 13222112233356677889999999888887654
No 459
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=24.05 E-value=68 Score=20.54 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=14.5
Q ss_pred chhhHHhHhCCChHHHHHH
Q 014255 357 RIPFISKELNVPEKDVEQL 375 (428)
Q Consensus 357 ~l~~iA~~l~l~~~~vE~~ 375 (428)
++..||+.++++.+++..+
T Consensus 8 tl~~IA~~~~~~~~~l~~~ 26 (44)
T PF01476_consen 8 TLWSIAKRYGISVDELMEL 26 (44)
T ss_dssp -HHHHHHHTTS-HHHHHHH
T ss_pred cHHHHHhhhhhhHhHHHHh
Confidence 5788999999999888764
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.89 E-value=5.8e+02 Score=23.65 Aligned_cols=76 Identities=13% Similarity=0.023 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcch-hHHHHHHHHHHHHHhhC
Q 014255 200 KLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RRIQCLKYLVLANMLME 275 (428)
Q Consensus 200 ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~-~~~~~l~y~~L~~lL~~ 275 (428)
....++.+|...-.....+++...+....|.-|+..|+|.+|.+.|-.+...|-..+=. -...++..+.-|+...+
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 33445555543333333467777777777889999999999999999986666433321 22345566666666543
No 461
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=23.78 E-value=88 Score=20.75 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=18.9
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDN 383 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g 383 (428)
-.+...||+.+|+|..-|-.++.+.-..|
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYREEG 45 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHccccc
Confidence 67899999999999999999988776655
No 462
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=23.74 E-value=1.6e+02 Score=27.60 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=34.3
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
++.++.....+++++||+.+|+|..-+-++|..|...|-+.-
T Consensus 19 IL~~l~~~~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~ 60 (257)
T PRK15090 19 ILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQ 60 (257)
T ss_pred HHHHhhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 344443335689999999999999999999999999998743
No 463
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=7.8e+02 Score=24.93 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHH--------------------hhh--
Q 014255 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMD-AYREMLTYI--------------------KSA-- 87 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e-~~~~l~~~~--------------------~~~-- 87 (428)
|.....+.+..+++.=-+..+| --.-+++..+..+.|+...++. .+++..++. ++.
T Consensus 47 D~~s~~kv~~~i~~lc~~~~~w-~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIy 125 (439)
T KOG1498|consen 47 DMASNTKVLEEIMKLCFSAKDW-DLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIY 125 (439)
T ss_pred hHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceE
Confidence 4566666666666543344555 2222345556666666666554 334444443 121
Q ss_pred --hhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhH--HHHHHHHhhccHHHHHHHHHHHH
Q 014255 88 --VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNL--KLCKIWFDMGEYGRMSKILKELH 163 (428)
Q Consensus 88 --~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~--~La~l~~~~g~~~~A~~~l~el~ 163 (428)
+.++++++++..+-+.-.+..+ -..-+.+.--|+.-.. + ..-++.+ .-.++-+..+||-.|.-+-.++.
T Consensus 126 vEvERarlTk~L~~ike~~Gdi~~----Aa~il~el~VETygsm-~--~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~ 198 (439)
T KOG1498|consen 126 VEVERARLTKMLAKIKEEQGDIAE----AADILCELQVETYGSM-E--KSEKVAFILEQMRLCLLRLDYVRAQIISKKIN 198 (439)
T ss_pred EeehHHHHHHHHHHHHHHcCCHHH----HHHHHHhcchhhhhhh-H--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 2456666666655554332111 1111222221111110 1 1112322 23345567799999999999999
Q ss_pred hhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014255 164 KSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (428)
Q Consensus 164 ~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a 208 (428)
+.+.+.+.. ..+++.+|=..++++.+.+.|-.+-.+|+..
T Consensus 199 ~K~F~~~~~-----~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 199 KKFFEKPDV-----QELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHhcCCccH-----HHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 888765422 3688999999999999999887777777765
No 464
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=23.61 E-value=1.2e+02 Score=22.18 Aligned_cols=34 Identities=9% Similarity=0.237 Sum_probs=27.3
Q ss_pred ccccchhhHHh-HhCCChHHHHHHHHHHHHcCcee
Q 014255 353 YTRIRIPFISK-ELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 353 Ys~I~l~~iA~-~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
=+..-|.++++ ..+..+-+|.+.+..||.+|++.
T Consensus 17 KskfYfkD~~k~~pd~k~R~vKKi~~~LV~Eg~l~ 51 (67)
T PF08679_consen 17 KSKFYFKDFYKAFPDAKPREVKKIVNELVNEGKLE 51 (67)
T ss_dssp SS-EEHHHHHHH-TTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCceeHHHHHHHCCCcCHHHHHHHHHHHHhhCeEE
Confidence 47888999999 55778899999999999999973
No 465
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=23.60 E-value=5.7e+02 Score=26.97 Aligned_cols=95 Identities=16% Similarity=0.084 Sum_probs=65.5
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~ 220 (428)
.-++...+.|+...|..++.++-..++ | ....+.-++.+++....+++..|...+.+.. .....+.-
T Consensus 68 lAa~al~~e~k~~qA~~Ll~ql~~~Lt------d----~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~---~~~ls~~Q 134 (604)
T COG3107 68 LAARALVEEGKTAQAQALLNQLPQELT------D----AQRAEKSLLAAELALAQKQPAAALQQLAKLL---PADLSQNQ 134 (604)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccCC------H----HHHHHHHHHHHHHHHhccChHHHHHHHhhcc---hhhcCHHH
Confidence 456678899999999999999987543 2 4567888888999999999999998876542 11122333
Q ss_pred HHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 221 MGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
+.+++...+.+.-..++--+|.+.+...
T Consensus 135 q~Ry~q~~a~a~ea~~~~~~a~rari~~ 162 (604)
T COG3107 135 QARYYQARADALEARGDSIDAARARIAQ 162 (604)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 4555554444444555566666666554
No 466
>PRK04217 hypothetical protein; Provisional
Probab=23.16 E-value=1.5e+02 Score=24.04 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=30.4
Q ss_pred ccccchhhHHhHhCCChHHHH-------HHHHHHHHcCceeEEEecCCC
Q 014255 353 YTRIRIPFISKELNVPEKDVE-------QLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE-------~~l~~lI~~g~i~g~IDq~~g 394 (428)
+.-+++++||+.+|++..-|. ..|.+++..+...+.+.+.+.
T Consensus 56 ~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L~~~~~~~~~~~~~~ 104 (110)
T PRK04217 56 YEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLVEGRELIILPQGNE 104 (110)
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhccceeEecCCcc
Confidence 366799999999999986554 455666777766666665543
No 467
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.14 E-value=6.3e+02 Score=23.81 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=17.5
Q ss_pred eeEeeeeecccc-hhhHHHHHHhhcccC
Q 014255 2 WIYIFFLFSDEF-TVSRVLCSILEKGLV 28 (428)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~ak~~~ 28 (428)
|.|+||.|-+-- +-++-+.|+.+....
T Consensus 15 ~~~~f~dfenaqpt~eerei~n~~~evl 42 (321)
T KOG3951|consen 15 WVEIFVDFENAQPTDEEREIYNMAEEVL 42 (321)
T ss_pred CcceeeeccccCCChHHHHHHHHHHHHH
Confidence 899999987644 445555566665443
No 468
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=22.92 E-value=1e+03 Score=25.96 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHH
Q 014255 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (428)
Q Consensus 184 ~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (428)
+...-+++|-..|+...|+..+++|.++.-.. -.-.+.++.--|.+-+...+++.|.+....+.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~--v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKT--VEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc--hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 34455788999999999999999987653211 12346777767788888999999999888773
No 469
>PLN02789 farnesyltranstransferase
Probab=22.71 E-value=7.2e+02 Score=24.20 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=17.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 61 VKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 61 ~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
+-++...|+|+++++++.+++..-
T Consensus 149 ~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 149 QWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHC
Confidence 345566778888888888888764
No 470
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=22.70 E-value=2.6e+02 Score=19.99 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=37.2
Q ss_pred HHHhhcCHHHHHHHHHHH-HhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHH
Q 014255 191 MYTETKNNKKLKQLYQKA-LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDF 245 (428)
Q Consensus 191 l~~~~~d~~ka~~~l~~a-~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f 245 (428)
-.+..|+|-+|-+.++.. +...+. ....+++.|..+.|.++...|+...|.+.|
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 345678888888888776 211111 113578899999999999999999887654
No 471
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT). Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway [].; PDB: 1S7O_A 1XSV_B.
Probab=22.60 E-value=86 Score=25.07 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhccc--cccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 338 LKNVRTQVLLKLIKPY--TRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 338 ~~~i~~~~l~~~~~pY--s~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
+..+....-.++++.| .-.|+++||+.+|+|...|=+.+-++.
T Consensus 14 Yg~LLT~kQ~~~l~lyy~eDlSlsEIAe~~~iSRqaV~d~ikr~~ 58 (101)
T PF04297_consen 14 YGELLTEKQREILELYYEEDLSLSEIAEELGISRQAVYDSIKRAE 58 (101)
T ss_dssp HGGGS-HHHHHHHHHHCTS---HHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444445555443 789999999999999988877776643
No 472
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=22.54 E-value=1.3e+02 Score=20.59 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=19.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLV 377 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~ 377 (428)
...|+-..||+.+|+++..|.+-++
T Consensus 26 ~~~vSS~~La~~~gi~~~qVRKDlS 50 (50)
T PF06971_consen 26 VERVSSQELAEALGITPAQVRKDLS 50 (50)
T ss_dssp -SEE-HHHHHHHHTS-HHHHHHHHH
T ss_pred CeeECHHHHHHHHCCCHHHhcccCC
Confidence 5799999999999999999887654
No 473
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.43 E-value=7e+02 Score=23.93 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHhhcCCCcc-------chhhHH--------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 014255 31 DPEGALAGFAEVVAMEPEK-------AEWGFK--------ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~-------~~~~~k--------~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k 95 (428)
.+-.|+..+....+.+..+ .+|... ..--.+.+|...|++++++.....+...= .. +=
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE-~~------Al 142 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE-AA------AL 142 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH-HH------HH
Confidence 4667888888876654310 222221 12223578999999999998887743321 11 11
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHh----hccHHHHHHHHHHHHhhccCCCC
Q 014255 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDG 171 (428)
Q Consensus 96 ~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~----~g~~~~A~~~l~el~~~~~~~~~ 171 (428)
-|+..+.. .+.+..+..++..+.-.++-+ ...||.-+.. .+++++|.=+++++-..+..+
T Consensus 143 ~VqI~lk~----------~r~d~A~~~lk~mq~ided~t----LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T-- 206 (299)
T KOG3081|consen 143 NVQILLKM----------HRFDLAEKELKKMQQIDEDAT----LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT-- 206 (299)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHccchHHH----HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC--
Confidence 11111111 111222222222221122222 1245554443 357899999999998876432
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 172 TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 172 ~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
..+..-++.++..++++..|..++..|..
T Consensus 207 ----------~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 207 ----------PLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred ----------hHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 12333455678889999999999988863
No 474
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=22.31 E-value=95 Score=21.56 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=11.0
Q ss_pred ccchhhHHhHhCCChHHHH
Q 014255 355 RIRIPFISKELNVPEKDVE 373 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE 373 (428)
.|++++|+.-|++|.+++-
T Consensus 4 ~lt~~~L~~~fhlp~~eAA 22 (52)
T PF02042_consen 4 SLTLEDLSQYFHLPIKEAA 22 (52)
T ss_pred ccCHHHHHHHhCCCHHHHH
Confidence 4566666666666655543
No 475
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=22.31 E-value=3.9e+02 Score=22.69 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=38.6
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE----EEecCCC-EEEEcc
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG----HIDQVNR-LLERGD 400 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g----~IDq~~g-~v~~~~ 400 (428)
+...++=++||+.+|++..+|-+.|.+|-.+|.+.+ .-|..+| .....|
T Consensus 12 ~~~~~~dedLa~~l~i~~n~vRkiL~~L~ed~~~~~~~~~e~~~~~~~~~~~yw 65 (147)
T smart00531 12 RNGCVTEEDLAELLGIKQKQLRKILYLLYDEKLIKIDYKREKDPETKTWYRYYW 65 (147)
T ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHHHHHhhhcchhheeeeeCCCCceEEEEEE
Confidence 456789999999999999999999999999887632 2455566 555555
No 476
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=22.23 E-value=73 Score=35.59 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=27.9
Q ss_pred hHHhHhCCCh------HHHHHHHHHHHHcCceeE-EEecCCCE
Q 014255 360 FISKELNVPE------KDVEQLLVSLILDNRIDG-HIDQVNRL 395 (428)
Q Consensus 360 ~iA~~l~l~~------~~vE~~l~~lI~~g~i~g-~IDq~~g~ 395 (428)
+|..+.++-+ ++.=.+|.+++.+|.++| +||+++|.
T Consensus 263 dIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL 305 (879)
T PRK14511 263 DVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGL 305 (879)
T ss_pred cchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccc
Confidence 3455555543 456789999999999999 99999994
No 477
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=22.18 E-value=2.7e+02 Score=25.78 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+.+++.|+..-+..-+.|=.++ +-.+||+.||+|-.-|-.-|..|-..|.|.-+ +..|+.+..
T Consensus 5 ~~v~~~L~~~I~~g~l~pG~~LpsE~eLae~~gVSRtpVREAL~~Le~~GlV~~~--~~~G~~V~~ 68 (253)
T PRK10421 5 DEVADRVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSR--RGGGTFIRW 68 (253)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--CCCeEEEec
Confidence 3456666655555556787899 68999999999999999999999999998744 445665543
No 478
>PRK00215 LexA repressor; Validated
Probab=22.10 E-value=1.4e+02 Score=26.79 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=35.3
Q ss_pred ccchhhHHhHhCC-ChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 355 RIRIPFISKELNV-PEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 355 ~I~l~~iA~~l~l-~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
..++.+||+.+|+ +..-+-..|.+|...|.|....+. ...+.+
T Consensus 23 ~~s~~ela~~~~~~~~~tv~~~l~~L~~~g~i~~~~~~-~r~~~l 66 (205)
T PRK00215 23 PPSRREIADALGLRSPSAVHEHLKALERKGFIRRDPGR-SRAIEV 66 (205)
T ss_pred CCCHHHHHHHhCCCChHHHHHHHHHHHHCCCEEeCCCC-cceEEe
Confidence 4689999999999 999999999999999999654444 344555
No 479
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=22.05 E-value=2e+02 Score=26.63 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+.+++.|++.-+..-+.|=.++ +-..||+.||+|-.-|-.-|..|-..|.|.-+ +..|+.+..
T Consensus 13 ~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 76 (254)
T PRK09464 13 DVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRR--QGGGTFVQS 76 (254)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--cCceeEEec
Confidence 3456666655555556777888 89999999999999999999999999999754 345655543
No 480
>PF09202 Rio2_N: Rio2, N-terminal; InterPro: IPR015285 This N-terminal domain is found in RIO2 kinases, and is structurally homologous to the winged helix (wHTH) domain. It adopts a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A.
Probab=21.77 E-value=2.5e+02 Score=21.47 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=36.4
Q ss_pred hhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 349 ~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
-.+.|.=|.++.|++..+++..+++..|.+++..|.+.-+.-.-+|.
T Consensus 18 gmk~hE~VP~~~I~~~s~l~~~~~~~~L~~L~~~kLv~~~~~~Y~GY 64 (82)
T PF09202_consen 18 GMKNHEWVPLELIEKISGLSEGEVEKRLKRLVKLKLVSRRNKPYDGY 64 (82)
T ss_dssp TTTT-SSEEHHHHHHHHT--HHHHHHHHHHHHHTTSEEEE-SSS-EE
T ss_pred cccCCccCCHHHHHHHhCcCHHHHHHHHHHHHhcCCccccCCCcceE
Confidence 35779999999999999999999999999999999997755444554
No 481
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=21.76 E-value=1.9e+02 Score=24.96 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=24.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
+.-.++++||+.+|+|+.-|...+.++.
T Consensus 143 ~~g~s~~eIA~~lgis~~tV~~~l~Rar 170 (179)
T PRK12514 143 LEGLSYKELAERHDVPLNTMRTWLRRSL 170 (179)
T ss_pred HcCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 4567899999999999999998887764
No 482
>TIGR02394 rpoS_proteo RNA polymerase sigma factor RpoS. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoS (also called sigma-38, KatF, etc.), found only in Proteobacteria. This sigma factor is induced in stationary phase (in response to the stress of nutrient limitation) and becomes the second prinicipal sigma factor at that time. RpoS is a member of the larger Sigma-70 subfamily (TIGR02937) and most closely related to RpoD (TIGR02393).
Probab=21.73 E-value=1.7e+02 Score=27.95 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=27.0
Q ss_pred hccccccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 350 ~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
+..|.-.|+.+||+.+|+|+..|...+.+++.
T Consensus 237 L~~~e~~s~~EIA~~Lgis~~tVk~~l~rAlk 268 (285)
T TIGR02394 237 LLGYEPATLEEVAAEVGLTRERVRQIQVEALK 268 (285)
T ss_pred CCCCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34577889999999999999999988887653
No 483
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=21.73 E-value=66 Score=29.56 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=38.7
Q ss_pred hccccccchhhHHhHhCCCh------HHHHHHHHHHHHcCceeEEEecCCCEEEEcc--CCccchHHHHHHHH
Q 014255 350 IKPYTRIRIPFISKELNVPE------KDVEQLLVSLILDNRIDGHIDQVNRLLERGD--RSKGMKKYTAIDKW 414 (428)
Q Consensus 350 ~~pYs~I~l~~iA~~l~l~~------~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~--~~~~~~~~~~l~~w 414 (428)
+..|.++..+.+++++|+-. .+=|.++..||..| ++|+|=.++-+---.+ ......|+..|...
T Consensus 117 lS~YQr~RVEnVC~RL~L~~Ls~LW~rdQ~~LL~eMi~~g-~~AiiiKVAAigL~~khLgksL~em~p~L~~l 188 (277)
T KOG2316|consen 117 LSDYQRTRVENVCSRLGLVSLSYLWQRDQEELLQEMILSG-LDAIIIKVAAIGLGRKHLGKSLDEMQPYLLKL 188 (277)
T ss_pred HhHHHHHHHHHHHhhhCceeehHHHhccHHHHHHHHHHcC-CCeEEEEEeecccChhhhCcCHHHHHHHHHHh
Confidence 34566666667777777632 35577999999999 6888877665433221 12233555555443
No 484
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=21.67 E-value=1.8e+02 Score=28.89 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=35.6
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
.-|+-|+.+|+|++|.+++...-..... . --++...+-.|++++.+..|..-.+.|.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-----N-------pV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-----N-------PVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-----C-------ccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4678899999999999998876555321 0 1133444455666666665554444443
No 485
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=21.58 E-value=5.5e+02 Score=22.40 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 181 ~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
.+.-++....+-+..++...+..++..-+-. .|. ...++.+.|.+|+..|+|.+|.+.|.+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL-----RP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL-----RPE-FPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh-----CCC-chHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4445555556677788888888888765533 233 2357788899999999999999999997
No 486
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=21.47 E-value=3.9e+02 Score=23.09 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 182 ~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+.-++......+...+...+...+..-+-+ .|+ ...++.+-|.+|+..|+|.+|.+.|.+.-+
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvL-----rP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVL-----RPN-LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 344444445566678888888777765533 232 234677889999999999999999988743
No 487
>TIGR02366 DHAK_reg probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.
Probab=21.38 E-value=1e+02 Score=26.58 Aligned_cols=29 Identities=10% Similarity=0.273 Sum_probs=23.2
Q ss_pred HHHHHHHHhh--ccccccchhhHHhHhCCCh
Q 014255 341 VRTQVLLKLI--KPYTRIRIPFISKELNVPE 369 (428)
Q Consensus 341 i~~~~l~~~~--~pYs~I~l~~iA~~l~l~~ 369 (428)
.+..++.+++ +||..||+++||+..|++.
T Consensus 7 ~I~~a~~~Ll~~k~~~~ITV~~I~~~AgvsR 37 (176)
T TIGR02366 7 KIAKAFKDLMEVQAFSKISVSDIMSTAQIRR 37 (176)
T ss_pred HHHHHHHHHHHHCCCccCCHHHHHHHhCCCH
Confidence 3445556665 6899999999999999985
No 488
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=21.19 E-value=1.7e+02 Score=28.62 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=37.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~ 393 (428)
...+=++||+.+|+|-..|-++|.++...|-+.-+|+.+.
T Consensus 28 ~g~tQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~~~ 67 (318)
T PRK15418 28 DGLTQSEIGERLGLTRLKVSRLLEKGRQSGIIRVQINSRF 67 (318)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHcCcEEEEEeCCC
Confidence 6889999999999999999999999999999999998764
No 489
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=21.11 E-value=1.6e+02 Score=20.05 Aligned_cols=28 Identities=7% Similarity=0.209 Sum_probs=23.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
=...++..+|..||++..-|-+.+...+
T Consensus 17 R~~~~~~~La~~FgIs~stvsri~~~~~ 44 (53)
T PF13613_consen 17 RLNLTFQDLAYRFGISQSTVSRIFHEWI 44 (53)
T ss_pred HcCCcHhHHhhheeecHHHHHHHHHHHH
Confidence 3577899999999999988887776654
No 490
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=21.06 E-value=5.7e+02 Score=22.39 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=36.2
Q ss_pred chhhHHhHh--CCChHHHHHHHHHHHHcCcee----EEEecCCCEEEEc
Q 014255 357 RIPFISKEL--NVPEKDVEQLLVSLILDNRID----GHIDQVNRLLERG 399 (428)
Q Consensus 357 ~l~~iA~~l--~l~~~~vE~~l~~lI~~g~i~----g~IDq~~g~v~~~ 399 (428)
+...||+.+ ++|.++|+.-|--|..-|.|. |+--+.+..|...
T Consensus 41 d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~~g~y~~t~~~l~~~ 89 (171)
T PF14394_consen 41 DPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDGDGKYVQTDKSLTTS 89 (171)
T ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECCCCcEEEecceeeCC
Confidence 899999999 999999999999999999984 4555666666643
No 491
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=21.06 E-value=2.9e+02 Score=21.62 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=34.2
Q ss_pred hhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 359 PFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 359 ~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
..||+.++++..-+-..|-+|...|.|.=..|..++
T Consensus 40 ~~la~~l~i~~~~vt~~l~~Le~~glv~r~~~~~Dr 75 (126)
T COG1846 40 KELAERLGLDRSTVTRLLKRLEDKGLIERLRDPEDR 75 (126)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 999999999999999999999999999988888886
No 492
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=21.04 E-value=6e+02 Score=22.65 Aligned_cols=122 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcch
Q 014255 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (428)
Q Consensus 96 ~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~ 175 (428)
+..+++..++ ++.-.....+++......-.......+...+..+........++++.|..++..+....... .+
T Consensus 90 Lf~n~~~~l~--~~~~~~l~~~il~~~~~~~~~~~~~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~---~~- 163 (220)
T TIGR01716 90 LFGNTMSILN--SEDLEFLGKELLERLKRYRELNRYRRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPE---DD- 163 (220)
T ss_pred HHHhHHHHcC--HHHHHHHHHHHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchh---hh-
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHH
Q 014255 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIR 225 (428)
Q Consensus 176 ~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~ 225 (428)
.-..+-+...++-+....|+...+..-..++..+......+.+...+.
T Consensus 164 --~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~~~~~~~~~ 211 (220)
T TIGR01716 164 --LYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGYPTLAAYYQ 211 (220)
T ss_pred --HHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
No 493
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.04 E-value=9e+02 Score=24.69 Aligned_cols=132 Identities=11% Similarity=0.040 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh--
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV-TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA-- 129 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~-~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~-- 129 (428)
..|.+..+...|-..|+......++..+++-- ..- ..-..+-+++-++..+-. + ..|+.+-..+.++
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA-tLrhd~e~qavLiN~LLr~yL~--n-------~lydqa~~lvsK~~~ 237 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTA-TLRHDEEGQAVLINLLLRNYLH--N-------KLYDQADKLVSKSVY 237 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh-hhcCcchhHHHHHHHHHHHHhh--h-------HHHHHHHHHhhcccC
Confidence 45666666667777777777777766666543 211 223344455666666543 1 2334443333321
Q ss_pred ---hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHH
Q 014255 130 ---KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 200 (428)
Q Consensus 130 ---~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~k 200 (428)
.....|.|-.+-+|.|.--+++|.+|.+.+-......+. .++ -...-.+....+-+.+-+|++|.
T Consensus 238 pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~a-----lGf~q~v~k~~ivv~ll~geiPe 305 (493)
T KOG2581|consen 238 PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAA-----LGFRQQVNKLMIVVELLLGEIPE 305 (493)
T ss_pred ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhh-----hhHHHHHHHHHHHHHHHcCCCcc
Confidence 112278888889999999999999999876665555432 111 13344444455555566777764
No 494
>PRK06771 hypothetical protein; Provisional
Probab=20.95 E-value=67 Score=25.20 Aligned_cols=29 Identities=24% Similarity=0.467 Sum_probs=24.4
Q ss_pred cchhhHHhHhCCChH--HHHHHHHHHHHcCc
Q 014255 356 IRIPFISKELNVPEK--DVEQLLVSLILDNR 384 (428)
Q Consensus 356 I~l~~iA~~l~l~~~--~vE~~l~~lI~~g~ 384 (428)
..++.|++.+|++.. ++...+.+++.+|+
T Consensus 37 ~~L~~I~~~~Gi~~~~~~~~~e~~~Li~~Gk 67 (93)
T PRK06771 37 DRLQLITKEMGIVDREPPVNKELRQLMEEGQ 67 (93)
T ss_pred HHHHHHHHHcCCCCCcccccHHHHHHHHcCC
Confidence 367899999999866 67788999999986
No 495
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=20.70 E-value=1.1e+03 Score=25.42 Aligned_cols=66 Identities=11% Similarity=0.247 Sum_probs=44.8
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHH
Q 014255 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGK----------YKEMMDAYREMLTYI 84 (428)
Q Consensus 18 ~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~----------~~~l~e~~~~l~~~~ 84 (428)
...+..+++=+.+|..+-|+.++.+......... ..+++-.++...++.+. |....+.+..++..+
T Consensus 221 L~eIv~sRGKK~TDr~eqI~~L~~L~~ia~~~~~-~i~Il~~lIsa~FD~~~~~~~~M~~~~W~~~~~~i~~Ll~lL 296 (595)
T PF05470_consen 221 LKEIVESRGKKGTDRQEQIRQLEKLLEIAKTPYQ-KIEILLHLISARFDYNSSISDYMPIEQWKKCLNNINELLDLL 296 (595)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHcCccc-chhHHHhhhHHHHccCCccccCcCHHHHHHHHHHHHHHHHHH
Confidence 4456677777778888888888777765432222 57777777766665443 777777777777765
No 496
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=20.65 E-value=4e+02 Score=20.42 Aligned_cols=61 Identities=18% Similarity=0.333 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhHHhhcCCh--hHHHHHHHH--HHHHHHHH--HHHhhccccccchhhHHhHhCCChH
Q 014255 310 IIEFEKILKSNRKTIMDDP--FIRNYIEDL--LKNVRTQV--LLKLIKPYTRIRIPFISKELNVPEK 370 (428)
Q Consensus 310 l~~f~~~l~~~~~~l~~D~--~l~~~~~~l--~~~i~~~~--l~~~~~pYs~I~l~~iA~~l~l~~~ 370 (428)
...+...+......+..+| .+..|+..| |..++.-+ |+..+.--+.++..+|-+.+|++.+
T Consensus 16 ~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA~~rgvt~~~v~~e~gl~~~ 82 (83)
T PF07061_consen 16 IEQLEKEISELEAELIEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIADQRGVTVKDVYEEFGLDMN 82 (83)
T ss_pred HHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCCC
Confidence 3345555555555544555 467888777 55665544 3444566788899999999988764
No 497
>PHA02591 hypothetical protein; Provisional
Probab=20.54 E-value=1e+02 Score=23.36 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.0
Q ss_pred cchhhHHhHhCCChHHHHHHHH
Q 014255 356 IRIPFISKELNVPEKDVEQLLV 377 (428)
Q Consensus 356 I~l~~iA~~l~l~~~~vE~~l~ 377 (428)
.|.+.||+.||++.+.|-+.+.
T Consensus 60 lSqeqIA~~LGVsqetVrKYL~ 81 (83)
T PHA02591 60 FTVEKIASLLGVSVRKVRRYLE 81 (83)
T ss_pred CCHHHHHHHhCCCHHHHHHHHh
Confidence 3889999999999999887764
No 498
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=20.51 E-value=1e+02 Score=19.73 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=25.0
Q ss_pred chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 357 ~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
++.++|+.+|++...+-.++. .|.+.+.-. ..|...+
T Consensus 2 s~~e~a~~lgvs~~tl~~~~~----~g~~~~~~~-~~~~~~~ 38 (49)
T cd04762 2 TTKEAAELLGVSPSTLRRWVK----EGKLKAIRT-PGGHRRF 38 (49)
T ss_pred CHHHHHHHHCcCHHHHHHHHH----cCCCCceeC-CCCceec
Confidence 678999999999887776554 577765422 2344444
No 499
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=20.24 E-value=1.1e+02 Score=19.93 Aligned_cols=29 Identities=14% Similarity=0.395 Sum_probs=22.0
Q ss_pred ccc-cccchhhHHhHhCCChHHHHHHHHHH
Q 014255 351 KPY-TRIRIPFISKELNVPEKDVEQLLVSL 379 (428)
Q Consensus 351 ~pY-s~I~l~~iA~~l~l~~~~vE~~l~~l 379 (428)
-|| +.-....||+..|++..+|..+.+..
T Consensus 8 nPYPs~~ek~~L~~~tgls~~Qi~~WF~Na 37 (40)
T PF05920_consen 8 NPYPSKEEKEELAKQTGLSRKQISNWFINA 37 (40)
T ss_dssp SGS--HHHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 466 56677889999999999999888764
No 500
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=20.16 E-value=73 Score=34.66 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=29.9
Q ss_pred hhhHHhHhCCChH------HHHHHHHHHHHcCceeE-EEecCCCE
Q 014255 358 IPFISKELNVPEK------DVEQLLVSLILDNRIDG-HIDQVNRL 395 (428)
Q Consensus 358 l~~iA~~l~l~~~------~vE~~l~~lI~~g~i~g-~IDq~~g~ 395 (428)
|=+|..+.|+.++ +.-.+|.+++.+|.|+| +||+++|.
T Consensus 264 FF~Vn~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGL 308 (889)
T COG3280 264 FFDVNSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGL 308 (889)
T ss_pred eeeccchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccc
Confidence 3456667777653 45678999999999998 99999984
Done!