Query 014255
Match_columns 428
No_of_seqs 225 out of 1101
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:17:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 100.0 1.1E-63 3.7E-68 494.3 34.7 363 51-425 16-390 (394)
2 4b4t_P 26S proteasome regulato 100.0 5.5E-54 1.9E-58 436.3 27.6 391 17-424 17-425 (445)
3 4b4t_Q 26S proteasome regulato 100.0 6.3E-44 2.1E-48 358.5 39.3 394 20-421 7-422 (434)
4 4b4t_R RPN7, 26S proteasome re 100.0 1.8E-43 6.2E-48 357.9 17.9 394 14-423 6-419 (429)
5 4b4t_O 26S proteasome regulato 100.0 1.1E-27 3.8E-32 239.0 23.5 279 143-425 83-384 (393)
6 4b4t_S RPN3, 26S proteasome re 99.9 5.2E-22 1.8E-26 200.0 17.0 232 183-419 232-466 (523)
7 3t5x_A PCI domain-containing p 99.8 2.1E-20 7.1E-25 169.1 13.3 171 220-402 12-194 (203)
8 3t5v_B Nuclear mRNA export pro 99.8 1.3E-17 4.3E-22 167.6 28.6 246 151-401 141-429 (455)
9 1ufm_A COP9 complex subunit 4; 99.7 9.7E-18 3.3E-22 128.7 4.6 73 332-404 7-79 (84)
10 3chm_A COP9 signalosome comple 99.3 4.7E-12 1.6E-16 110.1 10.9 131 263-404 25-160 (169)
11 3sf4_A G-protein-signaling mod 99.3 2.5E-09 8.6E-14 104.4 28.2 238 12-257 4-262 (406)
12 3ro2_A PINS homolog, G-protein 99.3 3.4E-09 1.2E-13 100.0 27.9 222 28-257 17-258 (338)
13 4a1s_A PINS, partner of inscut 99.2 5.2E-09 1.8E-13 102.9 27.8 222 28-257 60-298 (411)
14 3ulq_A Response regulator aspa 99.2 1E-08 3.4E-13 100.7 25.7 211 28-248 115-332 (383)
15 3sf4_A G-protein-signaling mod 99.2 1.2E-08 4.1E-13 99.5 26.0 222 29-258 100-343 (406)
16 3ro2_A PINS homolog, G-protein 99.2 4.9E-09 1.7E-13 98.8 22.4 110 137-252 224-333 (338)
17 3q15_A PSP28, response regulat 99.1 3.1E-08 1.1E-12 97.1 26.2 185 28-222 113-301 (378)
18 4a1s_A PINS, partner of inscut 99.1 1.2E-08 4.2E-13 100.3 23.3 221 30-258 140-379 (411)
19 3edt_B KLC 2, kinesin light ch 99.1 2.8E-08 9.7E-13 91.4 21.9 218 28-251 13-281 (283)
20 2ifu_A Gamma-SNAP; membrane fu 99.0 7.6E-08 2.6E-12 91.9 23.8 211 30-249 5-222 (307)
21 3nf1_A KLC 1, kinesin light ch 99.0 8.5E-08 2.9E-12 89.8 23.7 217 29-251 40-307 (311)
22 1qqe_A Vesicular transport pro 99.0 2.6E-07 8.9E-12 87.4 26.5 236 54-331 37-274 (292)
23 1qqe_A Vesicular transport pro 98.9 1.9E-07 6.7E-12 88.3 23.1 193 15-214 34-231 (292)
24 3q15_A PSP28, response regulat 98.9 5.1E-07 1.7E-11 88.4 23.7 207 56-273 103-310 (378)
25 3uq3_A Heat shock protein STI1 98.8 2.5E-06 8.5E-11 77.3 26.2 199 29-253 18-238 (258)
26 3ulq_A Response regulator aspa 98.8 1.4E-06 4.7E-11 85.2 25.7 203 60-273 109-313 (383)
27 3nf1_A KLC 1, kinesin light ch 98.8 3.2E-06 1.1E-10 78.9 25.9 197 51-253 24-226 (311)
28 3u3w_A Transcriptional activat 98.8 8.9E-07 3E-11 83.5 21.8 198 53-258 74-273 (293)
29 3u3w_A Transcriptional activat 98.8 4.7E-07 1.6E-11 85.4 19.0 188 27-222 86-277 (293)
30 2qfc_A PLCR protein; TPR, HTH, 98.7 1.7E-06 5.7E-11 81.7 21.2 198 54-259 75-274 (293)
31 2ifu_A Gamma-SNAP; membrane fu 98.7 2.3E-06 8E-11 81.4 22.1 175 29-213 49-225 (307)
32 3gw4_A Uncharacterized protein 98.7 5.1E-06 1.7E-10 72.7 22.3 187 27-225 3-190 (203)
33 2pl2_A Hypothetical conserved 98.7 4E-06 1.4E-10 75.5 21.8 192 29-248 18-211 (217)
34 2qfc_A PLCR protein; TPR, HTH, 98.6 1.5E-06 5.3E-11 81.9 18.8 185 28-220 87-275 (293)
35 4eqf_A PEX5-related protein; a 98.6 1.5E-06 5.1E-11 84.0 18.9 197 29-252 78-311 (365)
36 3vtx_A MAMA; tetratricopeptide 98.6 3E-06 1E-10 73.4 18.3 152 29-210 18-169 (184)
37 3qky_A Outer membrane assembly 98.6 1E-05 3.5E-10 74.5 22.8 186 19-253 17-226 (261)
38 3hym_B Cell division cycle pro 98.6 5.1E-06 1.7E-10 78.2 20.9 194 31-251 106-299 (330)
39 1fch_A Peroxisomal targeting s 98.6 1.4E-05 4.7E-10 76.8 24.0 52 29-84 77-128 (368)
40 2ho1_A Type 4 fimbrial biogene 98.6 6.5E-06 2.2E-10 74.8 20.5 190 29-252 50-239 (252)
41 1hz4_A MALT regulatory protein 98.6 4E-05 1.4E-09 74.2 27.2 213 28-250 26-243 (373)
42 3ro3_A PINS homolog, G-protein 98.6 1.1E-05 3.8E-10 67.0 20.2 156 51-254 6-161 (164)
43 2vq2_A PILW, putative fimbrial 98.6 3E-05 1E-09 68.4 23.8 190 29-250 21-210 (225)
44 2q7f_A YRRB protein; TPR, prot 98.5 3.6E-06 1.2E-10 75.7 17.7 198 18-251 24-222 (243)
45 3ieg_A DNAJ homolog subfamily 98.5 9.7E-06 3.3E-10 77.0 21.5 196 29-252 133-336 (359)
46 3gw4_A Uncharacterized protein 98.5 2.3E-05 7.8E-10 68.4 22.2 182 65-259 3-184 (203)
47 1fch_A Peroxisomal targeting s 98.5 5.4E-06 1.9E-10 79.6 19.7 194 29-255 111-318 (368)
48 4eqf_A PEX5-related protein; a 98.5 1.2E-05 4.2E-10 77.4 21.9 197 33-251 44-276 (365)
49 3u4t_A TPR repeat-containing p 98.5 6E-06 2.1E-10 75.8 18.4 122 29-165 16-137 (272)
50 3ieg_A DNAJ homolog subfamily 98.5 1.5E-05 5.1E-10 75.7 20.5 194 29-252 16-218 (359)
51 3hym_B Cell division cycle pro 98.5 1.7E-05 5.8E-10 74.5 20.5 189 30-253 36-224 (330)
52 4b0z_A RPN12, 26S proteasome r 98.5 4E-06 1.4E-10 76.7 15.3 182 192-378 17-214 (229)
53 3u4t_A TPR repeat-containing p 98.4 1.1E-05 3.7E-10 74.0 18.3 171 55-254 4-174 (272)
54 2yhc_A BAMD, UPF0169 lipoprote 98.4 2.3E-05 7.8E-10 70.8 20.1 171 20-210 7-212 (225)
55 3cv0_A Peroxisome targeting si 98.4 6.4E-05 2.2E-09 70.4 24.0 60 21-84 25-85 (327)
56 2y4t_A DNAJ homolog subfamily 98.4 8.9E-05 3E-09 73.2 25.6 204 29-251 107-324 (450)
57 3cv0_A Peroxisome targeting si 98.4 3.8E-05 1.3E-09 72.0 21.8 194 29-254 68-272 (327)
58 2y4t_A DNAJ homolog subfamily 98.4 3.7E-05 1.3E-09 76.0 22.6 194 29-251 156-358 (450)
59 3vtx_A MAMA; tetratricopeptide 98.4 3.2E-05 1.1E-09 66.8 19.5 167 53-251 4-170 (184)
60 3ro3_A PINS homolog, G-protein 98.4 3.2E-05 1.1E-09 64.0 18.8 132 133-270 6-138 (164)
61 3edt_B KLC 2, kinesin light ch 98.3 2.4E-05 8.1E-10 71.5 17.9 183 65-253 12-200 (283)
62 1hz4_A MALT regulatory protein 98.3 0.0002 6.7E-09 69.2 24.9 197 50-254 10-206 (373)
63 4b4t_Q 26S proteasome regulato 98.3 4.4E-05 1.5E-09 75.2 20.6 191 61-260 11-213 (434)
64 4i17_A Hypothetical protein; T 98.3 0.0001 3.4E-09 66.1 21.2 126 29-211 20-146 (228)
65 3fp2_A TPR repeat-containing p 98.3 5.2E-05 1.8E-09 76.7 21.4 193 30-252 290-492 (537)
66 1w3b_A UDP-N-acetylglucosamine 98.3 6.3E-05 2.1E-09 73.1 21.2 187 29-251 114-300 (388)
67 2xpi_A Anaphase-promoting comp 98.3 3.6E-05 1.2E-09 79.1 20.4 103 138-251 477-579 (597)
68 3as5_A MAMA; tetratricopeptide 98.3 6.4E-05 2.2E-09 63.9 18.8 154 29-252 21-174 (186)
69 2xpi_A Anaphase-promoting comp 98.3 5.1E-05 1.8E-09 78.0 21.1 189 29-253 318-506 (597)
70 1xnf_A Lipoprotein NLPI; TPR, 98.3 0.00013 4.6E-09 66.5 21.8 188 29-250 18-205 (275)
71 1w3b_A UDP-N-acetylglucosamine 98.3 5.3E-05 1.8E-09 73.7 20.1 52 29-84 46-97 (388)
72 4abn_A Tetratricopeptide repea 98.3 5.3E-05 1.8E-09 76.8 20.7 190 29-244 115-314 (474)
73 3fp2_A TPR repeat-containing p 98.3 4.4E-05 1.5E-09 77.2 19.2 192 29-251 256-457 (537)
74 4gyw_A UDP-N-acetylglucosamine 98.3 1.9E-05 6.4E-10 84.5 16.9 152 29-250 22-173 (723)
75 2gw1_A Mitochondrial precursor 98.2 5.7E-05 2E-09 75.7 19.4 207 31-269 285-494 (514)
76 3uq3_A Heat shock protein STI1 98.2 0.00055 1.9E-08 61.5 23.4 183 53-250 4-201 (258)
77 2gw1_A Mitochondrial precursor 98.1 4.3E-05 1.5E-09 76.6 15.9 192 29-251 250-444 (514)
78 3urz_A Uncharacterized protein 98.1 0.00012 4.1E-09 65.1 16.3 159 28-253 16-188 (208)
79 2q7f_A YRRB protein; TPR, prot 98.0 0.00019 6.4E-09 64.2 16.9 153 29-211 70-222 (243)
80 2vq2_A PILW, putative fimbrial 98.0 0.0017 6E-08 56.7 22.5 169 53-251 7-176 (225)
81 3qky_A Outer membrane assembly 98.0 0.00039 1.3E-08 63.7 18.5 142 29-211 65-224 (261)
82 3mkr_A Coatomer subunit epsilo 98.0 0.00095 3.3E-08 62.8 20.6 194 21-254 38-232 (291)
83 4abn_A Tetratricopeptide repea 97.9 0.00032 1.1E-08 70.9 18.1 186 32-251 84-287 (474)
84 1ouv_A Conserved hypothetical 97.9 0.002 6.9E-08 59.1 22.2 178 30-251 20-215 (273)
85 2yhc_A BAMD, UPF0169 lipoprote 97.9 0.0019 6.5E-08 57.8 21.3 188 52-250 2-212 (225)
86 2ho1_A Type 4 fimbrial biogene 97.9 0.00086 3E-08 60.4 19.1 168 53-250 36-203 (252)
87 3n71_A Histone lysine methyltr 97.9 0.00013 4.4E-09 74.3 14.8 139 28-210 321-463 (490)
88 2pl2_A Hypothetical conserved 97.9 0.0014 4.8E-08 58.5 20.0 165 54-251 5-180 (217)
89 1ouv_A Conserved hypothetical 97.9 0.0013 4.3E-08 60.5 20.2 178 29-250 55-250 (273)
90 4g1t_A Interferon-induced prot 97.9 0.00019 6.6E-09 71.4 15.5 206 30-250 227-458 (472)
91 4gcn_A Protein STI-1; structur 97.9 0.00025 8.6E-09 57.9 13.2 101 139-251 11-112 (127)
92 4i17_A Hypothetical protein; T 97.8 0.0016 5.5E-08 58.0 18.8 136 55-251 8-146 (228)
93 1xnf_A Lipoprotein NLPI; TPR, 97.8 0.00079 2.7E-08 61.3 16.7 191 29-253 56-246 (275)
94 4ga2_A E3 SUMO-protein ligase 97.8 0.00012 4.2E-09 61.6 9.8 120 29-212 10-130 (150)
95 2vsy_A XCC0866; transferase, g 97.7 0.0006 2E-08 70.3 16.4 156 29-214 2-160 (568)
96 1p5q_A FKBP52, FK506-binding p 97.7 0.00025 8.5E-09 68.3 12.7 149 53-252 146-295 (336)
97 3mkr_A Coatomer subunit epsilo 97.7 0.014 4.8E-07 54.6 24.6 184 27-252 10-196 (291)
98 4g1t_A Interferon-induced prot 97.7 0.00092 3.1E-08 66.4 16.8 203 29-252 64-277 (472)
99 4gcn_A Protein STI-1; structur 97.7 0.0019 6.4E-08 52.6 15.6 116 53-224 7-122 (127)
100 4gyw_A UDP-N-acetylglucosamine 97.7 0.00092 3.1E-08 71.3 16.6 132 53-250 8-139 (723)
101 2pzi_A Probable serine/threoni 97.7 0.0014 4.8E-08 69.4 18.0 154 27-211 402-563 (681)
102 2fo7_A Synthetic consensus TPR 97.6 0.0025 8.7E-08 50.3 15.3 58 141-210 74-131 (136)
103 1a17_A Serine/threonine protei 97.6 0.0021 7.3E-08 53.5 15.1 30 54-83 13-42 (166)
104 2r5s_A Uncharacterized protein 97.6 0.00072 2.5E-08 58.1 12.2 154 28-209 18-171 (176)
105 3as5_A MAMA; tetratricopeptide 97.6 0.0027 9.2E-08 53.4 15.6 121 29-213 55-175 (186)
106 2e2e_A Formate-dependent nitri 97.5 0.0022 7.4E-08 54.7 14.4 121 28-212 22-145 (177)
107 2fo7_A Synthetic consensus TPR 97.5 0.0098 3.3E-07 46.8 17.3 130 55-250 2-131 (136)
108 4gco_A Protein STI-1; structur 97.5 0.0014 4.6E-08 53.4 12.1 95 139-251 16-110 (126)
109 1a17_A Serine/threonine protei 97.5 0.011 3.7E-07 49.0 18.2 94 139-248 50-143 (166)
110 2h6f_A Protein farnesyltransfe 97.5 0.0064 2.2E-07 59.7 19.1 153 29-211 110-269 (382)
111 3n71_A Histone lysine methyltr 97.5 0.0032 1.1E-07 64.0 16.9 109 137-250 352-463 (490)
112 2ond_A Cleavage stimulation fa 97.4 0.012 4.1E-07 55.2 19.6 191 32-253 80-272 (308)
113 1hh8_A P67PHOX, NCF-2, neutrop 97.4 0.0054 1.8E-07 53.6 16.0 128 29-211 19-150 (213)
114 1elr_A TPR2A-domain of HOP; HO 97.4 0.0051 1.7E-07 48.5 14.2 102 139-252 7-109 (131)
115 3qou_A Protein YBBN; thioredox 97.4 0.0032 1.1E-07 58.8 14.9 154 28-209 129-282 (287)
116 2xev_A YBGF; tetratricopeptide 97.4 0.0073 2.5E-07 48.0 15.2 102 139-252 5-106 (129)
117 4gco_A Protein STI-1; structur 97.4 0.0035 1.2E-07 50.9 13.1 100 53-212 12-111 (126)
118 4ga2_A E3 SUMO-protein ligase 97.4 0.0017 5.7E-08 54.5 11.2 94 139-250 34-128 (150)
119 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0011 3.9E-08 66.6 11.7 145 53-248 267-411 (457)
120 3upv_A Heat shock protein STI1 97.3 0.0093 3.2E-07 47.5 14.6 96 139-252 7-102 (126)
121 1hh8_A P67PHOX, NCF-2, neutrop 97.2 0.0073 2.5E-07 52.7 14.7 104 138-253 39-152 (213)
122 3rkv_A Putative peptidylprolyl 97.2 0.021 7E-07 47.8 16.9 118 53-212 10-127 (162)
123 3rjv_A Putative SEL1 repeat pr 97.2 0.065 2.2E-06 47.3 20.8 178 33-250 3-196 (212)
124 3sz7_A HSC70 cochaperone (SGT) 97.2 0.0069 2.4E-07 51.0 13.5 97 138-252 13-109 (164)
125 3gyz_A Chaperone protein IPGC; 97.2 0.012 4E-07 49.6 14.5 100 53-212 35-134 (151)
126 3q49_B STIP1 homology and U bo 97.2 0.0096 3.3E-07 47.9 13.5 97 139-253 12-108 (137)
127 3qwp_A SET and MYND domain-con 97.1 0.0063 2.2E-07 60.7 14.5 104 29-172 300-407 (429)
128 2xcb_A PCRH, regulatory protei 97.1 0.016 5.4E-07 47.6 14.7 96 139-252 21-116 (142)
129 3gyz_A Chaperone protein IPGC; 97.1 0.0079 2.7E-07 50.7 12.8 98 137-252 37-134 (151)
130 2vgx_A Chaperone SYCD; alterna 97.1 0.012 3.9E-07 49.2 13.5 112 38-213 9-120 (148)
131 2xcb_A PCRH, regulatory protei 97.1 0.013 4.4E-07 48.1 13.7 113 37-213 5-117 (142)
132 2vgx_A Chaperone SYCD; alterna 97.1 0.014 4.7E-07 48.6 14.0 97 138-252 23-119 (148)
133 3qww_A SET and MYND domain-con 97.0 0.0044 1.5E-07 61.9 12.3 104 29-172 311-418 (433)
134 2xev_A YBGF; tetratricopeptide 97.0 0.0087 3E-07 47.6 11.9 93 29-167 15-107 (129)
135 2xm6_A Protein corresponding t 97.0 0.11 3.8E-06 51.9 22.6 179 28-250 55-251 (490)
136 2fbn_A 70 kDa peptidylprolyl i 97.0 0.019 6.5E-07 49.8 14.8 116 53-212 37-152 (198)
137 2ooe_A Cleavage stimulation fa 97.0 0.042 1.4E-06 55.7 19.3 189 34-253 304-494 (530)
138 2h6f_A Protein farnesyltransfe 97.0 0.079 2.7E-06 51.8 20.6 253 53-343 96-365 (382)
139 3sz7_A HSC70 cochaperone (SGT) 96.9 0.037 1.3E-06 46.3 15.8 102 53-214 10-111 (164)
140 2lni_A Stress-induced-phosphop 96.9 0.017 5.9E-07 45.6 12.8 96 138-251 18-113 (133)
141 2vyi_A SGTA protein; chaperone 96.9 0.035 1.2E-06 43.3 14.5 97 137-251 13-109 (131)
142 2ond_A Cleavage stimulation fa 96.9 0.066 2.3E-06 50.0 18.7 161 29-213 112-272 (308)
143 2xm6_A Protein corresponding t 96.9 0.17 5.9E-06 50.5 22.8 89 140-250 332-431 (490)
144 2dba_A Smooth muscle cell asso 96.9 0.017 5.8E-07 46.7 12.6 99 138-251 30-128 (148)
145 1ihg_A Cyclophilin 40; ppiase 96.9 0.022 7.6E-07 55.4 15.4 142 53-244 222-363 (370)
146 2vyi_A SGTA protein; chaperone 96.8 0.018 6E-07 45.2 12.1 28 139-166 83-110 (131)
147 1elw_A TPR1-domain of HOP; HOP 96.8 0.017 6E-07 44.3 11.9 95 139-251 7-101 (118)
148 2kck_A TPR repeat; tetratricop 96.8 0.0067 2.3E-07 46.4 9.2 98 139-252 9-107 (112)
149 3rkv_A Putative peptidylprolyl 96.8 0.017 5.9E-07 48.3 12.5 108 138-251 13-126 (162)
150 1hxi_A PEX5, peroxisome target 96.8 0.013 4.6E-07 46.9 11.2 93 140-250 21-113 (121)
151 1p5q_A FKBP52, FK506-binding p 96.8 0.016 5.6E-07 55.4 13.7 120 28-207 159-290 (336)
152 3upv_A Heat shock protein STI1 96.8 0.039 1.3E-06 43.7 13.9 99 54-212 4-102 (126)
153 1xi4_A Clathrin heavy chain; a 96.8 0.13 4.5E-06 58.0 21.9 182 23-248 991-1221(1630)
154 1wi9_A Protein C20ORF116 homol 96.7 0.0042 1.4E-07 44.8 6.5 57 345-401 11-67 (72)
155 1elr_A TPR2A-domain of HOP; HO 96.7 0.046 1.6E-06 42.7 13.5 106 53-211 3-108 (131)
156 3k9i_A BH0479 protein; putativ 96.7 0.0095 3.3E-07 47.1 9.3 90 29-167 3-92 (117)
157 2fbn_A 70 kDa peptidylprolyl i 96.7 0.029 1E-06 48.6 13.2 109 137-251 39-151 (198)
158 1wao_1 Serine/threonine protei 96.6 0.0041 1.4E-07 62.9 8.5 118 28-207 18-135 (477)
159 1na0_A Designed protein CTPR3; 96.6 0.033 1.1E-06 43.1 12.1 96 138-251 11-106 (125)
160 1hxi_A PEX5, peroxisome target 96.5 0.017 5.7E-07 46.3 9.8 86 28-165 29-114 (121)
161 2kck_A TPR repeat; tetratricop 96.5 0.018 6.2E-07 43.8 9.7 89 28-167 18-108 (112)
162 3q49_B STIP1 homology and U bo 96.5 0.14 4.8E-06 40.7 15.5 102 53-214 8-109 (137)
163 3ma5_A Tetratricopeptide repea 96.5 0.015 5E-07 44.8 9.0 71 29-104 20-90 (100)
164 2l6j_A TPR repeat-containing p 96.5 0.0047 1.6E-07 47.6 6.1 86 139-236 7-92 (111)
165 3mv2_B Coatomer subunit epsilo 96.4 0.26 8.9E-06 46.6 19.0 127 137-276 137-270 (310)
166 1elw_A TPR1-domain of HOP; HOP 96.4 0.081 2.8E-06 40.3 13.2 98 54-211 4-101 (118)
167 2pzi_A Probable serine/threoni 96.3 0.022 7.5E-07 60.2 12.2 118 29-165 446-563 (681)
168 2vsy_A XCC0866; transferase, g 96.3 0.039 1.3E-06 56.6 13.7 154 67-252 2-158 (568)
169 3urz_A Uncharacterized protein 96.3 0.065 2.2E-06 47.0 13.5 94 140-251 8-117 (208)
170 2lni_A Stress-induced-phosphop 96.3 0.092 3.1E-06 41.2 13.3 100 53-166 15-114 (133)
171 3qww_A SET and MYND domain-con 96.3 0.042 1.4E-06 54.8 13.4 102 148-254 310-414 (433)
172 2dba_A Smooth muscle cell asso 96.2 0.065 2.2E-06 43.1 12.1 103 53-212 27-129 (148)
173 3mv2_B Coatomer subunit epsilo 96.1 0.89 3.1E-05 42.9 20.9 166 29-212 113-283 (310)
174 1na0_A Designed protein CTPR3; 96.1 0.14 4.8E-06 39.3 13.0 99 53-211 8-106 (125)
175 3qwp_A SET and MYND domain-con 96.1 0.15 5.3E-06 50.6 16.1 106 144-254 295-403 (429)
176 2e2e_A Formate-dependent nitri 96.1 0.058 2E-06 45.5 11.4 97 138-252 46-145 (177)
177 2kc7_A BFR218_protein; tetratr 96.1 0.038 1.3E-06 41.7 9.2 73 29-106 13-86 (99)
178 1ihg_A Cyclophilin 40; ppiase 96.0 0.058 2E-06 52.4 12.6 108 138-251 225-336 (370)
179 2if4_A ATFKBP42; FKBP-like, al 96.0 0.021 7E-07 54.8 9.1 150 53-251 178-328 (338)
180 2hr2_A Hypothetical protein; a 96.0 0.16 5.4E-06 43.1 13.5 112 140-252 15-132 (159)
181 4f3v_A ESX-1 secretion system 96.0 0.031 1E-06 52.3 9.7 97 137-250 103-199 (282)
182 2c2l_A CHIP, carboxy terminus 95.9 0.051 1.7E-06 50.4 11.1 97 139-253 7-103 (281)
183 3rjv_A Putative SEL1 repeat pr 95.8 0.47 1.6E-05 41.6 16.3 151 29-211 31-197 (212)
184 2kat_A Uncharacterized protein 95.7 0.069 2.4E-06 41.6 9.4 54 29-87 32-85 (115)
185 4b4t_T 26S proteasome regulato 95.7 0.17 5.8E-06 47.0 13.3 151 224-378 61-223 (274)
186 2ooe_A Cleavage stimulation fa 95.6 0.38 1.3E-05 48.5 17.2 25 141-165 361-385 (530)
187 3ma5_A Tetratricopeptide repea 95.5 0.082 2.8E-06 40.4 9.1 64 139-214 10-73 (100)
188 2hr2_A Hypothetical protein; a 95.5 0.54 1.8E-05 39.8 14.8 112 54-168 11-134 (159)
189 1kt0_A FKBP51, 51 kDa FK506-bi 95.4 0.1 3.5E-06 52.1 12.0 109 137-251 269-380 (457)
190 2c2l_A CHIP, carboxy terminus 95.2 0.25 8.6E-06 45.6 13.1 100 54-213 4-103 (281)
191 3k9i_A BH0479 protein; putativ 95.1 0.099 3.4E-06 41.0 8.6 90 148-252 2-91 (117)
192 1xi4_A Clathrin heavy chain; a 95.0 1.3 4.4E-05 50.2 19.6 168 23-210 1111-1308(1630)
193 2r5s_A Uncharacterized protein 94.8 0.71 2.4E-05 38.8 13.8 164 56-250 8-172 (176)
194 3qou_A Protein YBBN; thioredox 94.6 1.4 4.7E-05 40.5 16.4 31 54-84 117-147 (287)
195 2l6j_A TPR repeat-containing p 94.6 0.08 2.7E-06 40.4 6.6 53 28-84 16-68 (111)
196 2v5f_A Prolyl 4-hydroxylase su 94.4 0.21 7.2E-06 38.6 8.8 68 139-211 8-75 (104)
197 2kat_A Uncharacterized protein 94.4 0.31 1E-05 37.7 9.8 63 138-212 21-83 (115)
198 2kc7_A BFR218_protein; tetratr 94.4 0.3 1E-05 36.4 9.5 61 140-212 4-65 (99)
199 4g26_A Pentatricopeptide repea 94.4 1 3.4E-05 45.6 15.9 172 55-248 27-201 (501)
200 1na3_A Designed protein CTPR2; 94.1 0.17 5.8E-06 36.9 7.3 52 29-84 22-73 (91)
201 4b4t_O 26S proteasome regulato 93.9 0.23 7.8E-06 48.7 9.8 135 60-203 45-190 (393)
202 3bee_A Putative YFRE protein; 93.9 0.18 6.1E-06 38.5 7.1 49 32-84 25-73 (93)
203 3e4b_A ALGK; tetratricopeptide 93.8 4.3 0.00015 40.0 19.2 174 31-250 160-350 (452)
204 2if4_A ATFKBP42; FKBP-like, al 93.8 0.18 6.3E-06 48.0 8.6 107 138-250 181-292 (338)
205 1wao_1 Serine/threonine protei 93.8 0.11 3.9E-06 52.1 7.5 94 140-251 10-103 (477)
206 1rz4_A Eukaryotic translation 93.7 0.17 5.8E-06 45.6 7.7 94 291-398 95-189 (226)
207 2v5f_A Prolyl 4-hydroxylase su 93.5 0.091 3.1E-06 40.8 4.9 72 13-84 1-76 (104)
208 3e4b_A ALGK; tetratricopeptide 93.3 3 0.0001 41.1 17.0 92 138-250 178-279 (452)
209 1na3_A Designed protein CTPR2; 93.3 0.47 1.6E-05 34.3 8.5 62 138-211 11-72 (91)
210 3txn_A 26S proteasome regulato 93.1 6.8 0.00023 38.1 21.0 131 31-164 74-209 (394)
211 4g26_A Pentatricopeptide repea 91.8 3.9 0.00013 41.1 15.7 157 28-210 38-203 (501)
212 1xn7_A Hypothetical protein YH 91.3 0.29 9.8E-06 36.2 4.9 43 344-386 5-47 (78)
213 4b4t_R RPN7, 26S proteasome re 91.1 5.4 0.00018 39.2 15.5 108 54-166 131-238 (429)
214 1qgp_A Protein (double strande 91.1 0.61 2.1E-05 34.2 6.5 47 345-391 18-67 (77)
215 1pc2_A Mitochondria fission pr 90.3 0.47 1.6E-05 39.8 5.9 51 31-84 50-101 (152)
216 2k02_A Ferrous iron transport 90.2 0.47 1.6E-05 35.8 5.2 44 345-388 6-49 (87)
217 4e6h_A MRNA 3'-END-processing 89.6 22 0.00075 37.2 20.1 196 31-252 358-571 (679)
218 1qbj_A Protein (double-strande 89.5 0.54 1.8E-05 34.9 5.0 56 345-401 14-72 (81)
219 4f3v_A ESX-1 secretion system 89.4 5.7 0.00019 36.8 13.2 209 19-251 9-237 (282)
220 1zu2_A Mitochondrial import re 89.4 0.48 1.6E-05 40.1 5.3 49 32-84 62-121 (158)
221 2jt1_A PEFI protein; solution 88.7 0.61 2.1E-05 34.3 4.8 43 344-386 7-55 (77)
222 3ffl_A Anaphase-promoting comp 88.2 6.6 0.00022 33.3 11.4 71 141-214 25-95 (167)
223 4b4t_P 26S proteasome regulato 87.9 6.6 0.00023 38.8 13.4 111 53-165 136-247 (445)
224 2heo_A Z-DNA binding protein 1 87.4 0.94 3.2E-05 32.1 5.0 34 354-387 24-57 (67)
225 1ub9_A Hypothetical protein PH 87.3 2 6.9E-05 32.3 7.4 65 354-423 29-96 (100)
226 1klx_A Cysteine rich protein B 86.5 5.1 0.00017 32.2 9.8 112 30-165 9-126 (138)
227 2v79_A DNA replication protein 86.5 1.6 5.6E-05 35.7 6.6 61 353-416 49-111 (135)
228 1b89_A Protein (clathrin heavy 85.9 0.24 8.4E-06 49.2 1.6 40 31-79 18-57 (449)
229 3f6o_A Probable transcriptiona 85.9 3.3 0.00011 32.6 8.2 66 354-424 30-95 (118)
230 3r0a_A Putative transcriptiona 85.7 3.9 0.00013 32.6 8.5 69 356-424 43-117 (123)
231 1b89_A Protein (clathrin heavy 85.4 2.1 7.3E-05 42.4 8.1 174 56-248 124-308 (449)
232 2d1h_A ST1889, 109AA long hypo 85.1 4.8 0.00017 30.5 8.7 47 347-393 28-74 (109)
233 3lpz_A GET4 (YOR164C homolog); 84.9 27 0.00091 33.1 23.8 43 292-334 242-285 (336)
234 1sfx_A Conserved hypothetical 84.4 7.1 0.00024 29.4 9.3 39 353-391 32-70 (109)
235 3t5v_A Nuclear mRNA export pro 84.2 2.9 9.9E-05 39.5 8.1 82 291-377 145-247 (316)
236 1nzn_A CGI-135 protein, fissio 83.6 2.7 9.2E-05 33.9 6.5 66 17-84 35-104 (126)
237 3cuo_A Uncharacterized HTH-typ 83.2 5.8 0.0002 29.6 8.2 51 348-398 31-81 (99)
238 1klx_A Cysteine rich protein B 82.0 18 0.0006 28.8 12.3 87 142-250 31-125 (138)
239 2htj_A P fimbrial regulatory p 81.9 3.2 0.00011 30.3 6.0 34 354-387 13-46 (81)
240 2kko_A Possible transcriptiona 81.4 4.9 0.00017 31.1 7.3 38 354-391 37-74 (108)
241 3jth_A Transcription activator 81.4 8.6 0.00029 28.8 8.5 39 354-392 35-73 (98)
242 3o48_A Mitochondria fission 1 81.1 2.9 9.8E-05 34.1 5.8 51 31-84 58-108 (134)
243 2hzt_A Putative HTH-type trans 81.1 9.2 0.00031 29.4 8.8 66 353-418 25-95 (107)
244 1y8m_A FIS1; mitochondria, unk 80.1 3.1 0.0001 34.4 5.7 67 15-84 37-107 (144)
245 1q1h_A TFE, transcription fact 80.1 1 3.6E-05 35.0 2.9 44 345-388 23-66 (110)
246 2wpv_A GET4, UPF0363 protein Y 79.6 40 0.0014 31.5 20.8 34 292-325 242-275 (312)
247 2oqg_A Possible transcriptiona 78.5 11 0.00039 28.9 8.6 37 354-390 33-69 (114)
248 1zu2_A Mitochondrial import re 78.3 9.6 0.00033 32.0 8.4 84 149-250 15-119 (158)
249 1xd7_A YWNA; structural genomi 78.0 5.3 0.00018 32.8 6.8 59 344-404 13-71 (145)
250 1yyv_A Putative transcriptiona 77.9 23 0.0008 28.3 10.6 70 353-422 46-120 (131)
251 2cg4_A Regulatory protein ASNC 76.7 4.4 0.00015 33.4 5.9 47 346-392 13-62 (152)
252 2cfx_A HTH-type transcriptiona 76.6 4.7 0.00016 33.0 6.0 48 345-392 9-59 (144)
253 3lwf_A LIN1550 protein, putati 75.5 12 0.0004 31.4 8.2 51 354-404 43-93 (159)
254 2p5v_A Transcriptional regulat 75.3 4.9 0.00017 33.5 5.9 47 346-392 15-64 (162)
255 1pc2_A Mitochondria fission pr 75.2 16 0.00053 30.4 8.8 65 137-211 33-100 (152)
256 2y75_A HTH-type transcriptiona 74.4 6.2 0.00021 31.5 6.1 49 354-402 25-73 (129)
257 1oyi_A Double-stranded RNA-bin 74.3 4.2 0.00014 30.1 4.5 39 348-387 24-62 (82)
258 2dbb_A Putative HTH-type trans 73.9 5.3 0.00018 32.8 5.7 47 346-392 14-63 (151)
259 1ylf_A RRF2 family protein; st 73.8 8 0.00027 31.8 6.8 50 354-404 29-78 (149)
260 4fhn_B Nucleoporin NUP120; pro 73.7 1.2E+02 0.0039 33.7 20.3 204 58-274 846-1077(1139)
261 4ham_A LMO2241 protein; struct 73.5 23 0.00078 28.4 9.4 64 335-400 17-81 (134)
262 3ffl_A Anaphase-promoting comp 73.5 17 0.00058 30.7 8.7 67 185-251 23-92 (167)
263 3df8_A Possible HXLR family tr 73.5 12 0.00041 29.0 7.4 77 342-419 29-107 (111)
264 1tbx_A ORF F-93, hypothetical 73.1 17 0.00059 27.1 8.1 49 353-401 20-72 (99)
265 3t8r_A Staphylococcus aureus C 72.9 12 0.00041 30.6 7.6 50 354-403 27-76 (143)
266 3i4p_A Transcriptional regulat 72.6 4.8 0.00016 33.7 5.2 49 345-393 7-58 (162)
267 2w25_A Probable transcriptiona 72.4 6.9 0.00023 32.1 6.1 46 347-392 13-61 (150)
268 2nnn_A Probable transcriptiona 72.0 21 0.00071 28.1 8.9 42 354-395 51-92 (140)
269 1jgs_A Multiple antibiotic res 71.7 19 0.00066 28.3 8.6 43 353-395 46-88 (138)
270 2gxg_A 146AA long hypothetical 71.4 23 0.00077 28.2 9.0 47 353-399 48-97 (146)
271 3g3z_A NMB1585, transcriptiona 71.2 13 0.00044 29.8 7.4 47 354-400 44-93 (145)
272 3pqk_A Biofilm growth-associat 70.9 30 0.001 25.9 10.2 47 354-400 35-81 (102)
273 2fbi_A Probable transcriptiona 70.7 22 0.00076 28.0 8.8 43 353-395 48-90 (142)
274 2fsw_A PG_0823 protein; alpha- 70.7 17 0.00059 27.7 7.7 64 353-416 36-104 (107)
275 3bpv_A Transcriptional regulat 70.6 21 0.00072 28.1 8.6 44 353-396 41-84 (138)
276 2ia0_A Putative HTH-type trans 70.4 7.8 0.00027 32.8 6.1 47 346-392 22-71 (171)
277 4h7y_A Dual specificity protei 70.1 47 0.0016 27.7 10.4 51 112-168 76-126 (161)
278 3tgn_A ADC operon repressor AD 70.1 14 0.00047 29.6 7.4 48 347-395 44-91 (146)
279 3tqn_A Transcriptional regulat 70.0 10 0.00036 29.5 6.3 63 335-399 12-75 (113)
280 2e1c_A Putative HTH-type trans 69.9 5 0.00017 34.0 4.7 47 346-392 32-81 (171)
281 2a61_A Transcriptional regulat 69.8 24 0.00082 28.0 8.8 43 353-395 45-87 (145)
282 2qvo_A Uncharacterized protein 69.3 11 0.00037 28.2 6.1 47 355-401 30-76 (95)
283 4h7y_A Dual specificity protei 69.2 27 0.00093 29.1 8.7 65 133-210 58-122 (161)
284 2fbh_A Transcriptional regulat 69.1 21 0.0007 28.4 8.3 51 351-401 48-101 (146)
285 3k0l_A Repressor protein; heli 68.8 23 0.00079 29.0 8.7 47 353-399 58-107 (162)
286 2cyy_A Putative HTH-type trans 68.4 5.4 0.00018 32.8 4.5 47 346-392 12-61 (151)
287 1lj9_A Transcriptional regulat 68.2 23 0.0008 28.0 8.4 47 353-399 41-90 (144)
288 2rdp_A Putative transcriptiona 68.0 25 0.00087 28.1 8.7 43 353-395 54-96 (150)
289 3bee_A Putative YFRE protein; 68.0 19 0.00066 26.7 7.3 63 183-251 7-72 (93)
290 3eco_A MEPR; mutlidrug efflux 66.8 26 0.00091 27.5 8.4 41 354-394 46-86 (139)
291 2qlz_A Transcription factor PF 66.6 28 0.00096 31.0 9.2 45 353-400 176-220 (232)
292 2hr3_A Probable transcriptiona 66.4 27 0.00091 27.8 8.4 48 353-400 48-98 (147)
293 1i1g_A Transcriptional regulat 66.3 6.4 0.00022 31.8 4.5 41 347-387 10-50 (141)
294 3ech_A MEXR, multidrug resista 66.2 14 0.00047 29.5 6.6 43 353-395 49-91 (142)
295 3bja_A Transcriptional regulat 66.1 20 0.00068 28.2 7.5 42 353-394 45-86 (139)
296 1s3j_A YUSO protein; structura 66.1 24 0.00082 28.4 8.2 48 352-399 48-98 (155)
297 3bdd_A Regulatory protein MARR 65.9 11 0.00039 29.8 6.0 42 353-394 43-84 (142)
298 1z7u_A Hypothetical protein EF 65.4 22 0.00077 27.4 7.4 43 354-396 34-77 (112)
299 2pn6_A ST1022, 150AA long hypo 65.4 8.4 0.00029 31.5 5.1 47 346-392 8-57 (150)
300 3neu_A LIN1836 protein; struct 64.9 14 0.00046 29.5 6.1 63 335-399 16-79 (125)
301 3by6_A Predicted transcription 64.7 12 0.00041 29.8 5.8 63 335-399 14-77 (126)
302 3oop_A LIN2960 protein; protei 64.6 20 0.00067 28.6 7.2 49 353-401 49-100 (143)
303 2pg4_A Uncharacterized protein 64.3 18 0.00062 26.8 6.5 46 355-400 30-77 (95)
304 2frh_A SARA, staphylococcal ac 63.5 17 0.00058 28.6 6.5 47 354-400 52-101 (127)
305 3s2w_A Transcriptional regulat 63.3 25 0.00086 28.6 7.8 48 353-400 62-112 (159)
306 2eth_A Transcriptional regulat 62.8 36 0.0012 27.4 8.7 41 354-394 57-97 (154)
307 3nqo_A MARR-family transcripti 62.7 34 0.0012 29.0 8.8 44 352-395 54-97 (189)
308 3k69_A Putative transcription 62.6 21 0.00073 29.8 7.2 51 353-403 26-76 (162)
309 3bj6_A Transcriptional regulat 62.3 24 0.00082 28.3 7.4 52 349-400 48-102 (152)
310 2nyx_A Probable transcriptiona 62.1 32 0.0011 28.3 8.3 42 353-394 57-98 (168)
311 2b0l_A GTP-sensing transcripti 61.7 11 0.00038 28.9 4.8 51 348-398 35-86 (102)
312 1ku9_A Hypothetical protein MJ 61.6 36 0.0012 26.9 8.4 41 354-394 40-80 (152)
313 1u2w_A CADC repressor, cadmium 61.5 45 0.0015 26.0 8.7 36 354-389 55-90 (122)
314 1r1u_A CZRA, repressor protein 61.2 48 0.0016 25.0 8.6 37 354-390 38-74 (106)
315 1y0u_A Arsenical resistance op 60.8 21 0.00073 26.5 6.3 44 354-401 42-85 (96)
316 1on2_A Transcriptional regulat 60.3 37 0.0013 27.0 8.2 47 352-401 19-65 (142)
317 3cjn_A Transcriptional regulat 59.9 36 0.0012 27.6 8.2 48 353-400 64-114 (162)
318 1zbp_A Hypothetical protein VP 59.9 54 0.0018 30.0 9.7 54 27-84 8-61 (273)
319 2fa5_A Transcriptional regulat 59.5 25 0.00086 28.5 7.1 47 353-399 61-110 (162)
320 3hsr_A HTH-type transcriptiona 59.4 29 0.001 27.5 7.4 54 347-400 42-98 (140)
321 3cdh_A Transcriptional regulat 59.3 33 0.0011 27.6 7.8 54 347-400 49-105 (155)
322 2ek5_A Predicted transcription 59.2 18 0.00062 28.9 5.9 63 335-399 7-70 (129)
323 3bro_A Transcriptional regulat 58.7 20 0.0007 28.3 6.3 46 355-400 50-98 (141)
324 1v4r_A Transcriptional repress 58.5 5 0.00017 30.6 2.3 63 335-399 14-77 (102)
325 2f2e_A PA1607; transcription f 58.4 32 0.0011 28.0 7.4 65 353-417 35-102 (146)
326 2qww_A Transcriptional regulat 58.3 14 0.00048 29.9 5.3 48 353-400 53-105 (154)
327 2xvc_A ESCRT-III, SSO0910; cel 58.3 12 0.00041 25.4 3.7 33 354-386 24-56 (59)
328 3f3x_A Transcriptional regulat 58.2 51 0.0017 26.0 8.7 40 357-396 52-91 (144)
329 3nrv_A Putative transcriptiona 58.0 25 0.00085 28.1 6.7 49 352-400 51-102 (148)
330 4a5n_A Uncharacterized HTH-typ 57.5 72 0.0025 25.5 9.9 69 353-421 37-110 (131)
331 2vxz_A Pyrsv_GP04; viral prote 57.2 47 0.0016 27.4 7.8 71 343-425 13-83 (165)
332 3kp7_A Transcriptional regulat 57.0 27 0.00091 28.1 6.8 53 347-400 44-101 (151)
333 1r7j_A Conserved hypothetical 56.9 59 0.002 24.3 9.0 42 356-401 21-62 (95)
334 3b73_A PHIH1 repressor-like pr 56.2 15 0.00052 28.7 4.8 52 346-400 18-71 (111)
335 1r1t_A Transcriptional repress 56.0 66 0.0023 25.1 8.7 37 354-390 58-94 (122)
336 3dss_A Geranylgeranyl transfer 55.9 1.3E+02 0.0045 28.1 13.5 124 32-165 161-304 (331)
337 1sfu_A 34L protein; protein/Z- 55.5 29 0.00099 25.1 5.7 40 349-388 23-62 (75)
338 1xmk_A Double-stranded RNA-spe 55.5 16 0.00053 26.8 4.4 40 347-386 17-57 (79)
339 3e6m_A MARR family transcripti 54.9 32 0.0011 28.1 7.0 48 354-401 66-116 (161)
340 2bv6_A MGRA, HTH-type transcri 54.9 18 0.00063 28.7 5.4 48 353-400 49-99 (142)
341 4hbl_A Transcriptional regulat 54.2 14 0.00046 29.9 4.5 48 353-400 53-103 (149)
342 3e6c_C CPRK, cyclic nucleotide 53.8 7.6 0.00026 34.5 3.0 65 354-422 176-244 (250)
343 1uly_A Hypothetical protein PH 53.5 23 0.00078 30.5 6.0 35 354-388 32-66 (192)
344 2pex_A Transcriptional regulat 52.9 19 0.00065 29.1 5.2 48 353-400 59-109 (153)
345 3deu_A Transcriptional regulat 52.7 54 0.0019 26.9 8.2 48 354-401 67-117 (166)
346 2hoe_A N-acetylglucosamine kin 52.1 9.4 0.00032 36.7 3.6 55 331-386 7-64 (380)
347 4aik_A Transcriptional regulat 51.7 93 0.0032 25.1 9.4 47 355-401 46-95 (151)
348 3dra_A Protein farnesyltransfe 51.2 1.5E+02 0.0051 27.3 14.4 158 30-209 124-285 (306)
349 2x4h_A Hypothetical protein SS 51.0 26 0.00088 27.8 5.6 52 346-401 22-73 (139)
350 3mkq_A Coatomer beta'-subunit; 51.0 1.2E+02 0.0041 31.3 12.4 26 140-165 685-710 (814)
351 2k9l_A RNA polymerase sigma fa 50.6 13 0.00044 26.9 3.3 26 353-378 46-71 (76)
352 3fm5_A Transcriptional regulat 50.1 48 0.0017 26.4 7.3 42 354-395 53-94 (150)
353 2ff4_A Probable regulatory pro 49.8 63 0.0022 30.9 9.2 67 134-212 169-235 (388)
354 2ff4_A Probable regulatory pro 49.6 41 0.0014 32.3 7.8 53 28-84 183-235 (388)
355 3boq_A Transcriptional regulat 49.2 34 0.0012 27.6 6.3 49 352-400 59-110 (160)
356 3f6v_A Possible transcriptiona 49.2 35 0.0012 28.0 6.2 52 340-393 58-109 (151)
357 2lkp_A Transcriptional regulat 49.0 87 0.003 23.9 9.1 45 354-400 44-88 (119)
358 3u2r_A Regulatory protein MARR 48.6 57 0.0019 26.6 7.6 42 354-395 61-102 (168)
359 1z91_A Organic hydroperoxide r 48.3 16 0.00055 29.2 4.0 47 354-400 53-102 (147)
360 2jsc_A Transcriptional regulat 46.3 52 0.0018 25.5 6.6 36 355-390 34-69 (118)
361 2vn2_A DNAD, chromosome replic 45.1 29 0.001 27.5 5.0 58 356-416 52-111 (128)
362 3c7j_A Transcriptional regulat 45.1 35 0.0012 30.2 6.1 64 332-397 26-89 (237)
363 2p5k_A Arginine repressor; DNA 45.1 66 0.0022 21.4 6.3 51 342-397 6-61 (64)
364 3jw4_A Transcriptional regulat 44.3 34 0.0011 27.3 5.4 43 354-396 56-98 (148)
365 1ucr_A Protein DSVD; dissimila 43.6 24 0.00083 25.5 3.6 35 352-386 18-53 (78)
366 3ic7_A Putative transcriptiona 43.3 15 0.00052 29.2 3.0 62 336-399 15-77 (126)
367 3la7_A Global nitrogen regulat 43.2 36 0.0012 29.8 5.8 46 354-403 192-237 (243)
368 2zkz_A Transcriptional repress 42.7 46 0.0016 24.8 5.6 36 354-390 40-75 (99)
369 1j5y_A Transcriptional regulat 42.4 46 0.0016 28.2 6.2 48 340-387 20-69 (187)
370 1z6r_A MLC protein; transcript 41.9 35 0.0012 32.8 5.9 41 346-386 21-61 (406)
371 2wte_A CSA3; antiviral protein 41.8 57 0.0019 29.2 6.9 65 354-420 165-230 (244)
372 2jpc_A SSRB; DNA binding prote 41.3 39 0.0013 22.3 4.5 29 353-381 11-39 (61)
373 2pi2_A Replication protein A 3 40.9 5.7 0.0002 36.5 0.0 38 354-391 223-261 (270)
374 4b8x_A SCO5413, possible MARR- 40.7 54 0.0018 26.3 6.1 50 351-400 47-99 (147)
375 3iuo_A ATP-dependent DNA helic 40.7 24 0.00083 27.9 3.7 33 354-386 31-64 (122)
376 3f8m_A GNTR-family protein tra 40.7 74 0.0025 28.3 7.5 61 335-400 17-78 (248)
377 2vkj_A TM1634; membrane protei 40.6 68 0.0023 23.9 5.7 47 137-190 54-100 (106)
378 3c57_A Two component transcrip 40.5 38 0.0013 25.2 4.7 30 353-382 40-69 (95)
379 2fxa_A Protease production reg 40.4 31 0.001 29.9 4.8 47 354-400 61-110 (207)
380 1nzn_A CGI-135 protein, fissio 40.4 1.3E+02 0.0044 23.9 8.0 65 137-211 36-103 (126)
381 3i71_A Ethanolamine utilizatio 40.3 69 0.0024 21.7 5.2 42 346-387 8-50 (68)
382 4e6h_A MRNA 3'-END-processing 39.8 3.4E+02 0.012 28.1 20.5 166 61-251 350-533 (679)
383 2p7v_B Sigma-70, RNA polymeras 39.7 29 0.00098 23.9 3.6 29 353-381 23-51 (68)
384 1z05_A Transcriptional regulat 39.2 40 0.0014 32.8 5.9 41 346-386 44-84 (429)
385 2lnb_A Z-DNA-binding protein 1 39.2 66 0.0023 23.3 5.3 33 353-385 32-64 (80)
386 4ady_A RPN2, 26S proteasome re 39.0 4.1E+02 0.014 28.8 14.3 97 61-165 77-174 (963)
387 3kp1_E D-ornithine aminomutase 38.9 66 0.0022 25.4 5.7 60 325-385 17-77 (121)
388 1je8_A Nitrate/nitrite respons 38.2 49 0.0017 23.8 4.9 30 353-382 34-63 (82)
389 2oz6_A Virulence factor regula 38.1 48 0.0016 27.8 5.6 43 355-401 164-206 (207)
390 2qx5_A Nucleoporin NIC96; mRNA 38.0 1.1E+02 0.0038 31.7 9.1 30 134-163 534-565 (661)
391 2rnj_A Response regulator prot 37.7 46 0.0016 24.4 4.7 30 353-382 42-71 (91)
392 3sxy_A Transcriptional regulat 37.6 57 0.0019 28.2 6.1 63 335-399 15-77 (218)
393 2wpv_A GET4, UPF0363 protein Y 37.6 2.5E+02 0.0086 26.0 13.7 74 31-106 12-85 (312)
394 2gau_A Transcriptional regulat 37.5 72 0.0025 27.3 6.8 45 354-402 179-223 (232)
395 2h09_A Transcriptional regulat 37.4 1E+02 0.0034 24.8 7.3 45 354-401 53-97 (155)
396 3ryp_A Catabolite gene activat 37.3 39 0.0013 28.5 4.9 42 355-400 167-208 (210)
397 1fse_A GERE; helix-turn-helix 37.3 54 0.0018 22.5 4.9 29 353-381 24-52 (74)
398 3dkw_A DNR protein; CRP-FNR, H 37.2 39 0.0013 28.9 5.0 45 354-402 177-221 (227)
399 3dv8_A Transcriptional regulat 37.0 33 0.0011 29.2 4.4 44 355-402 169-212 (220)
400 3ly7_A Transcriptional activat 36.2 2.9E+02 0.0099 26.3 18.7 58 141-211 282-339 (372)
401 3hrs_A Metalloregulator SCAR; 36.1 1.2E+02 0.0041 26.2 8.0 53 346-401 11-63 (214)
402 4a0z_A Transcription factor FA 36.0 48 0.0016 28.4 5.2 46 338-383 9-54 (190)
403 2zcw_A TTHA1359, transcription 35.8 36 0.0012 28.7 4.5 44 355-402 146-189 (202)
404 1x3u_A Transcriptional regulat 35.7 58 0.002 22.7 4.9 30 353-382 29-58 (79)
405 3u64_A Protein TP_0956; tetrat 35.7 2.1E+02 0.0074 26.3 9.8 88 152-254 179-272 (301)
406 4ev0_A Transcription regulator 34.9 32 0.0011 29.2 4.0 45 354-402 162-206 (216)
407 2pft_A Exocytosis protein; hel 34.6 87 0.003 31.8 7.7 81 296-380 486-567 (571)
408 1zyb_A Transcription regulator 34.6 51 0.0017 28.5 5.3 45 354-402 185-229 (232)
409 3edp_A LIN2111 protein; APC883 34.6 63 0.0022 28.6 6.0 64 335-400 12-76 (236)
410 1okr_A MECI, methicillin resis 34.5 1.4E+02 0.0049 22.6 7.6 38 353-390 22-63 (123)
411 3t72_q RNA polymerase sigma fa 34.4 57 0.0019 24.7 4.8 28 354-381 38-65 (99)
412 3hug_A RNA polymerase sigma fa 34.0 59 0.002 23.7 4.9 29 353-381 51-79 (92)
413 3ly7_A Transcriptional activat 34.0 72 0.0025 30.6 6.5 52 28-84 289-340 (372)
414 3lpz_A GET4 (YOR164C homolog); 33.3 3.1E+02 0.011 25.7 12.1 26 217-246 135-160 (336)
415 3pvv_A Chromosomal replication 33.1 97 0.0033 23.5 5.9 45 299-344 54-98 (101)
416 3d0s_A Transcriptional regulat 32.8 42 0.0014 28.8 4.4 44 355-402 177-220 (227)
417 3b02_A Transcriptional regulat 32.6 39 0.0013 28.3 4.1 44 355-402 139-182 (195)
418 3ihu_A Transcriptional regulat 32.5 70 0.0024 27.7 5.8 64 334-399 18-81 (222)
419 3kae_A CDC27, possible protein 31.9 1.5E+02 0.0052 25.2 7.3 55 29-83 75-143 (242)
420 2wv0_A YVOA, HTH-type transcri 31.7 81 0.0028 27.9 6.2 63 335-399 13-76 (243)
421 2l0k_A Stage III sporulation p 31.4 42 0.0015 25.2 3.5 34 343-377 9-42 (93)
422 2gqq_A Leucine-responsive regu 31.3 18 0.00063 30.0 1.7 39 349-387 21-59 (163)
423 3eet_A Putative GNTR-family tr 31.3 80 0.0028 28.6 6.2 63 335-399 32-95 (272)
424 2cru_A Programmed cell death p 31.2 18 0.00063 28.6 1.5 50 341-391 38-88 (118)
425 2hs5_A Putative transcriptiona 31.1 87 0.003 27.6 6.3 62 335-398 31-92 (239)
426 3iwz_A CAP-like, catabolite ac 30.9 70 0.0024 27.3 5.6 43 355-401 187-229 (230)
427 1bja_A Transcription regulator 30.9 86 0.0029 23.6 5.2 65 345-414 20-85 (95)
428 2k9m_A RNA polymerase sigma fa 30.8 38 0.0013 27.2 3.4 26 353-378 37-62 (130)
429 3l7w_A Putative uncharacterize 30.5 1.1E+02 0.0038 23.1 6.1 66 360-425 31-102 (108)
430 1ku3_A Sigma factor SIGA; heli 30.2 49 0.0017 23.0 3.6 28 354-381 29-56 (73)
431 1hw1_A FADR, fatty acid metabo 30.1 87 0.003 27.3 6.1 62 335-398 10-72 (239)
432 3esl_A Checkpoint serine/threo 30.0 2.7E+02 0.0092 24.0 12.1 83 117-210 58-143 (202)
433 3ulq_B Transcriptional regulat 28.9 79 0.0027 23.2 4.7 28 354-381 43-70 (90)
434 3u5c_Z RP45, S31, YS23, 40S ri 28.6 97 0.0033 24.0 5.1 50 350-399 54-103 (108)
435 2o8x_A Probable RNA polymerase 28.0 56 0.0019 22.1 3.6 29 353-381 29-57 (70)
436 2p4w_A Transcriptional regulat 28.0 2.2E+02 0.0074 24.4 8.2 38 354-391 27-64 (202)
437 2bgc_A PRFA; bacterial infecti 27.7 72 0.0025 27.6 5.1 44 355-402 169-213 (238)
438 2xzm_8 RPS25E,; ribosome, tran 27.6 98 0.0034 25.1 5.2 50 350-399 57-107 (143)
439 3bwg_A Uncharacterized HTH-typ 27.4 1.2E+02 0.0039 26.8 6.4 62 336-399 9-71 (239)
440 2pjp_A Selenocysteine-specific 27.2 66 0.0023 25.1 4.3 33 355-387 20-52 (121)
441 3kcc_A Catabolite gene activat 27.2 73 0.0025 28.1 5.1 42 355-400 217-258 (260)
442 2wvi_A Mitotic checkpoint seri 27.0 2.7E+02 0.0093 23.1 8.6 80 115-210 42-124 (164)
443 4b4t_S RPN3, 26S proteasome re 26.9 1.3E+02 0.0046 30.1 7.3 66 137-209 232-297 (523)
444 3e97_A Transcriptional regulat 26.7 54 0.0018 28.2 4.0 45 354-402 174-218 (231)
445 1tc3_C Protein (TC3 transposas 26.6 33 0.0011 21.1 2.0 26 354-379 20-45 (51)
446 3mkq_A Coatomer beta'-subunit; 26.4 1.7E+02 0.0057 30.2 8.5 83 144-247 660-748 (814)
447 1tty_A Sigma-A, RNA polymerase 26.3 54 0.0019 23.8 3.4 28 354-381 37-64 (87)
448 2fu4_A Ferric uptake regulatio 26.0 1.7E+02 0.0059 20.5 6.9 43 345-387 21-70 (83)
449 1ft9_A Carbon monoxide oxidati 25.8 54 0.0019 28.0 3.9 44 355-401 163-206 (222)
450 3dra_A Protein farnesyltransfe 25.8 3.8E+02 0.013 24.4 19.5 135 17-165 34-175 (306)
451 1eij_A Hypothetical protein MT 25.7 32 0.0011 25.2 1.8 22 370-391 37-58 (80)
452 2fmy_A COOA, carbon monoxide o 25.6 57 0.002 27.8 4.0 44 354-401 166-210 (220)
453 2b1e_A Exocyst complex compone 25.5 1.8E+02 0.0061 29.4 8.2 68 312-380 496-563 (564)
454 3ri2_A Transcriptional regulat 25.4 2.4E+02 0.0082 22.0 10.6 61 329-391 9-74 (123)
455 2w48_A Sorbitol operon regulat 24.7 1.3E+02 0.0044 27.7 6.5 40 353-392 19-58 (315)
456 3ez9_A Para; DNA binding, wing 24.2 89 0.0031 29.8 5.4 60 331-390 14-78 (403)
457 3q7a_A Farnesyltransferase alp 24.2 4.4E+02 0.015 24.6 13.7 28 178-208 301-328 (349)
458 3mkq_B Coatomer subunit alpha; 24.1 3.2E+02 0.011 23.0 9.8 25 141-165 39-63 (177)
459 3k2z_A LEXA repressor; winged 24.1 1.2E+02 0.004 25.8 5.6 33 355-387 24-56 (196)
460 1bia_A BIRA bifunctional prote 24.1 94 0.0032 28.9 5.4 44 343-386 7-50 (321)
461 2di3_A Bacterial regulatory pr 23.9 1.5E+02 0.005 25.9 6.4 65 335-399 7-74 (239)
462 1y8m_A FIS1; mitochondria, unk 23.8 2.9E+02 0.01 22.4 8.5 64 137-211 40-106 (144)
463 2fh0_A Hypothetical 16.0 kDa p 23.6 34 0.0012 25.1 1.7 22 370-391 35-56 (81)
464 3u64_A Protein TP_0956; tetrat 23.5 2.6E+02 0.0088 25.8 8.0 66 138-214 201-272 (301)
465 4gns_B Protein CSD3, chitin bi 23.4 1E+02 0.0034 32.6 5.8 48 29-80 350-397 (754)
466 1j1v_A Chromosomal replication 23.2 1.4E+02 0.0049 22.2 5.2 43 299-341 50-92 (94)
467 2fbk_A Transcriptional regulat 23.0 76 0.0026 26.3 4.1 46 355-400 86-134 (181)
468 1k8b_A EIF-2-beta, probable tr 22.9 1.4E+02 0.0049 19.7 4.5 38 357-399 13-50 (52)
469 3o48_A Mitochondria fission 1 22.7 3E+02 0.01 22.1 10.7 66 135-211 39-107 (134)
470 1ldd_A APC2WHB, anaphase promo 22.5 1.6E+02 0.0054 21.1 5.0 36 351-386 18-64 (74)
471 4fhn_B Nucleoporin NUP120; pro 22.2 3.2E+02 0.011 30.1 10.1 123 139-268 845-978 (1139)
472 3t5v_B Nuclear mRNA export pro 22.0 2.2E+02 0.0074 28.0 7.7 74 136-211 176-249 (455)
473 3mzy_A RNA polymerase sigma-H 22.0 97 0.0033 24.6 4.5 29 352-380 121-149 (164)
474 1p4w_A RCSB; solution structur 21.9 1.1E+02 0.0037 23.0 4.4 28 354-381 48-75 (99)
475 3mkq_B Coatomer subunit alpha; 21.9 3.6E+02 0.012 22.7 9.3 18 145-162 14-31 (177)
476 3fx3_A Cyclic nucleotide-bindi 21.6 1.2E+02 0.004 26.0 5.3 43 355-402 178-220 (237)
477 1dce_A Protein (RAB geranylger 20.6 6.4E+02 0.022 25.1 15.9 117 31-165 44-173 (567)
478 2l01_A Uncharacterized protein 20.6 2.4E+02 0.0084 20.3 6.0 51 348-400 17-68 (77)
479 2dk5_A DNA-directed RNA polyme 20.1 2.7E+02 0.0091 20.5 6.9 38 354-391 35-72 (91)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=1.1e-63 Score=494.34 Aligned_cols=363 Identities=23% Similarity=0.392 Sum_probs=315.1
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh
Q 014255 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (428)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~ 130 (428)
.....++.+++++|.++|+++++.++++.+++++ +.++|++++|+|+++++.++.+|+ . ...++++|+++++|+.
T Consensus 16 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kak~~k~v~~l~~~~~~~~~--~--~~~~~~~~~~~~~~a~ 90 (394)
T 3txn_A 16 RIKEQGILQQGELYKQEGKAKELADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDA--G--TGIEVQLCKDCIEWAK 90 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGG-GGSCHHHHHHHHHHHHHHHTTSCC--C--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhcCCC--c--HHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999999999 999999999999999999999886 2 4788999999999997
Q ss_pred hh-hHHHHH--hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 014255 131 NE-RLWFKT--NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (428)
Q Consensus 131 ~~-kl~lr~--~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~ 207 (428)
++ |.|+|. +.+||.+|++.|+|.+|++++.+++.+|.+. || +.+++|+++.++++|+.++|+++++++|++
T Consensus 91 ~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd---~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 91 QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DD---KNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SC---THHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---cc---chhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 66 577774 5599999999999999999999999999876 34 489999999999999999999999999999
Q ss_pred HHhhhccC-CChhhHHHHHHhhhHhHH-hhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCC--CCCCC-
Q 014255 208 ALAIKSAI-PHPRIMGIIRECGGKMHM-AERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE--VNPFD- 282 (428)
Q Consensus 208 a~~~~~~i-~~p~~~~~i~~~~g~~~~-~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~--~~~~~- 282 (428)
|+++.+++ +||+++|.+++|+|++|+ .+|||++|+++|+++|++|++.+++.+.++++|++||+|++++. ++++.
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~ 244 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVS 244 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhc
Confidence 99999998 689999999999999999 99999999999999999999999999999999999999998763 33333
Q ss_pred cccccccCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHH
Q 014255 283 GQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFIS 362 (428)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA 362 (428)
++...+| .+|+++||..|+.+|+++|+..|+.++..+++.+..||++++|+..|+++|+++||+++++||++|+|++||
T Consensus 245 ~~~~~~~-~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA 323 (394)
T 3txn_A 245 GKLAITY-SGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVA 323 (394)
T ss_dssp SHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHH
T ss_pred ccccccc-CCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHH
Confidence 3334556 579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHH----HHHHHHHHHHHHHhh
Q 014255 363 KELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA----IDKWNSQLRKKRRDN 425 (428)
Q Consensus 363 ~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~----l~~w~~~v~~l~~~~ 425 (428)
+.||+|++++|++|++||.+|+|+|+|||++|+|++.++++++.+|++ +.+|+..|++|++--
T Consensus 324 ~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~ 390 (394)
T 3txn_A 324 ESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKA 390 (394)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC----------------------------
T ss_pred HHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888876654 558999999998643
No 2
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-54 Score=436.28 Aligned_cols=391 Identities=13% Similarity=0.170 Sum_probs=311.4
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhhcCC--CccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHH
Q 014255 17 RVLCSILEKGLVETDPEGALAGFAEVVAME--PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (428)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~--~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (428)
--..++.|+++.++|+++|++.+..+.+.. .++..|+++++.+++++|++.|+|+.+.+++..+.+. +.+.|++++
T Consensus 17 ~~~~~~~~~~l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk--r~qlk~ai~ 94 (445)
T 4b4t_P 17 LKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK--HGQLKLSIQ 94 (445)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT--TTTSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--hhhhHHHHH
Confidence 346789999999999999999998886643 3678999999999999999999999999999887775 567999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHH-----HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCC
Q 014255 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (428)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~l-----r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~ 169 (428)
++|+.+++++...|+.+. +....+.+.+.+++++|+|+ |++.+||++|++.|+|.+|+++|++++++|...
T Consensus 95 ~~V~~~~~~l~~~~~~d~----~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~ 170 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDL----NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS 170 (445)
T ss_dssp HHHHHHHHHHHHHCTTHH----HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhcCCchhH----HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 999999999987665322 23334445566678888876 788899999999999999999999999999864
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh-hhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 170 DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA-IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 170 ~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~-~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
++ +..++++++.++++|+..+|+.+|+.+++++.. ..+...+|.+++.++.|+|++++++++|.+|+++|+++
T Consensus 171 ---~~---~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 171 ---ME---MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp ---SC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ---cc---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55 478999999999999999999999999999865 43445578999999999999999999999999999999
Q ss_pred HHhhhhhcch-hHHHHHHHHHHHHHhhCCCCCCCCcccccc-cC--CCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhh
Q 014255 249 FKNYDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQEAKP-YK--NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324 (428)
Q Consensus 249 ~~~~~~~~~~-~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~-~~--~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l 324 (428)
|.+|+..+++ .+..+++++++|.+|++. +|..+...+. +. ..++++++..|+++|.++++..|+..+..++..+
T Consensus 245 ~~~~~~~~d~~~~~~~L~~~v~~~iLa~~--~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 245 YQTDAIKSDEAKWKPVLSHIVYFLVLSPY--GNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSSC--SSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 9999988887 466788999999998743 2333332222 22 2468899999999999999999999999999999
Q ss_pred cCChhH------HHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 325 MDDPFI------RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 325 ~~D~~l------~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
..|+++ ..|+..|++++++||++++++||++|+|++||+.+|+|++++|.+|++||.+|+|+|+|||++|+|+|
T Consensus 323 ~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F 402 (445)
T 4b4t_P 323 NEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNF 402 (445)
T ss_dssp TTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC
T ss_pred cccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEE
Confidence 888876 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHh
Q 014255 399 GDRSKGMKKYTAIDKWNSQLRKKRRD 424 (428)
Q Consensus 399 ~~~~~~~~~~~~l~~w~~~v~~l~~~ 424 (428)
.++.. ..+.++.|+++|++|+.-
T Consensus 403 ~~~~~---~~~~l~~W~~~i~~l~~~ 425 (445)
T 4b4t_P 403 EKPKN---SSQLLNEWSHNVDELLEH 425 (445)
T ss_dssp --------------------------
T ss_pred CCCCC---hHHHHHHHHHHHHHHHHH
Confidence 87753 467899999999999753
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-44 Score=358.52 Aligned_cols=394 Identities=19% Similarity=0.290 Sum_probs=327.6
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCCcc-------------chhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 014255 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEK-------------AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIK 85 (428)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~-------------~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~ 85 (428)
.+.+|+.+ .++++++|++.|.++++..+.. ..+..+++.+++.+|.+.|+|++++++|+++++++
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~- 85 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM- 85 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-
Confidence 44556654 4568999999999999876521 24667899999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 86 SAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 86 ~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
+.+++++.+++++.+++.+...++ +.+...+++..+++......+..++.++..+||.+|.+.|+|.+|.++++++...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 888999999999999999987665 4566777777777665555566678899999999999999999999999999999
Q ss_pred ccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhhHHHHHHhhhHhHHhhhcHHHHHHH
Q 014255 166 CQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATD 244 (428)
Q Consensus 166 ~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~-p~~~~~i~~~~g~~~~~~~~y~~A~~~ 244 (428)
+... ++ ....+++++.++++|...||+.+|+.+++++.++.+.+++ |..++.++.++|.++.++++|.+|+++
T Consensus 165 ~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 165 FKKL---DD---KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HTTS---SC---STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHhc---cc---chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8865 34 3678999999999999999999999999999999888886 578899999999999999999999999
Q ss_pred HHHHHHhhhhhcc----hhHHHHHHHHHHHHHhhCCC---CCCCCcccccccCCCcchHHHHHHHHHHhhCCHHHHHHHH
Q 014255 245 FFEAFKNYDEAGN----QRRIQCLKYLVLANMLMESE---VNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKIL 317 (428)
Q Consensus 245 f~ea~~~~~~~~~----~~~~~~l~y~~L~~lL~~~~---~~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l 317 (428)
|.++|++++..+. +.+..+++|+++|.++.+.. .+++.++...++..+|+++++..+..+|.++++..|+..+
T Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 318 (434)
T 4b4t_Q 239 FFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTAL 318 (434)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999987654 35677888999999876532 1245566666666678899999999999999999999999
Q ss_pred HHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEE
Q 014255 318 KSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (428)
Q Consensus 318 ~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (428)
..+...+..|+++..|+..+.+.++++++.++++||++|++++||+.|+++++++|.+|++||.+|.|.|+|||++|+|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~ 398 (434)
T 4b4t_Q 319 KQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLY 398 (434)
T ss_dssp HHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEE
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccchHHHHHHHHHHHHHHH
Q 014255 398 RGDRSKGMKKYTAIDKWNSQLRKK 421 (428)
Q Consensus 398 ~~~~~~~~~~~~~l~~w~~~v~~l 421 (428)
+.+++++++.|+...+..+++.++
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~l~~~ 422 (434)
T 4b4t_Q 399 VYETPNQDATYDSALELVGQLNKV 422 (434)
T ss_dssp CC----------------------
T ss_pred eCCCcchhHHHHHHHHHHHHHHHH
Confidence 999887777776655555554443
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-43 Score=357.85 Aligned_cols=394 Identities=11% Similarity=0.113 Sum_probs=265.8
Q ss_pred hhhHHHHHHhhcccCCCCHHHHHHHHHHhhcC-CCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh-----h
Q 014255 14 TVSRVLCSILEKGLVETDPEGALAGFAEVVAM-EPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS-----A 87 (428)
Q Consensus 14 ~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~-~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~-----~ 87 (428)
+-+..+.|+.+...+-.|++-|...|.-.... .+++.+|.++.+. .+....++.+ +|..+...+.. .
T Consensus 6 e~~~e~~y~d~~~~k~P~~~la~~~f~l~~~~~~~~~~~~~~~~l~---~~ik~~~ma~----~y~~l~~~l~~~~~~~~ 78 (429)
T 4b4t_R 6 EKSQEVEYVDPTVNRVPNYEVSEKAFLLTQSKVSIEQRKEAAEFVL---AKIKEEEMAP----YYKYLCEEYLVNNGQSD 78 (429)
T ss_dssp ------------------------------------CHHHHHHHHH---HHHHHTCCHH----HHHHHHHHSCCCCSCCS
T ss_pred hhhhhccccCcccccCCChHHHHHHHHhcCCCCChhhHHHHHHHHH---HHHHHhCCHH----HHHHHHHHHhhcccchh
Confidence 34556788888878888888888877543222 1234455555444 4444555544 34444433201 1
Q ss_pred hhhhHHHHHHHHHHHHhc----CCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHH
Q 014255 88 VTRNYSEKCINNIMDFVS----GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELH 163 (428)
Q Consensus 88 ~~k~~~~k~v~~il~~~~----~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~ 163 (428)
..+......++....... ..+..+.....++.+.+.+..+....+..|.+...+||++|++.||+++|.+.+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~ 158 (429)
T 4b4t_R 79 LEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSL 158 (429)
T ss_dssp SCSHHHHHHHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233333444433322211 1112223334444443333222223344577888999999999999999999999999
Q ss_pred hhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHH
Q 014255 164 KSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAAT 243 (428)
Q Consensus 164 ~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~ 243 (428)
+.|+.+ ..++++++.++++++..+|+..++.++.++........+|..++.++.|+|+++++.++|.+|++
T Consensus 159 ~~~~~~---------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~ 229 (429)
T 4b4t_R 159 SKAIST---------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAK 229 (429)
T ss_dssp HHHTCC---------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHH
T ss_pred HhcCCh---------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 999753 46799999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCC----CCCCcccccccC-CCcchHHHHHHHHHHhhCCHHHHHH-HH
Q 014255 244 DFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEV----NPFDGQEAKPYK-NDPEILAMTNLIAAYQRNEIIEFEK-IL 317 (428)
Q Consensus 244 ~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~----~~~~~~~~~~~~-~~~~~~~l~~L~~af~~~dl~~f~~-~l 317 (428)
+|+++|.+|+..+...+.+++.|++||++++.+.. ++++++++..+. .+|.++++..++.+|..+++..|.+ .+
T Consensus 230 ~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l 309 (429)
T 4b4t_R 230 LLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLL 309 (429)
T ss_dssp HHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999998888888999999999999876533 367777776654 3578889999999999999999865 45
Q ss_pred HHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEE
Q 014255 318 KSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (428)
Q Consensus 318 ~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (428)
..+...+..|+++++|++.|+++||++|+.++++||++|+|++||+.||+|++++|.+|++||.+|+|+|+||+++|+|+
T Consensus 310 ~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~ 389 (429)
T 4b4t_R 310 ETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVE 389 (429)
T ss_dssp HHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEE
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEE
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccchHHHHHH----HHHHHHHHHHH
Q 014255 398 RGDRSKGMKKYTAID----KWNSQLRKKRR 423 (428)
Q Consensus 398 ~~~~~~~~~~~~~l~----~w~~~v~~l~~ 423 (428)
+.++++++.+|+.+. .+.+++++|.+
T Consensus 390 ~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~ 419 (429)
T 4b4t_R 390 TNRPDNKNAQYHLLVKQGDGLLTKLQKYGA 419 (429)
T ss_dssp ECC---------------------------
T ss_pred ECCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998875 45677777754
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=238.99 Aligned_cols=279 Identities=18% Similarity=0.209 Sum_probs=204.2
Q ss_pred HHHHHhhccHHHHHHHHHHHHhhccCCCCCcc-----hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-
Q 014255 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDD-----QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP- 216 (428)
Q Consensus 143 a~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d-----~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~- 216 (428)
.....+..+.++|.++|.++...+...++... +......+.+.+.++++|+..||...|+.+++++++..+...
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 34455678899999999998776532111000 000123456667788999999999999999999987776654
Q ss_pred -ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhh--cchhHHHHHHH-HHHHHHhhCCCCCCCCccccccc---
Q 014255 217 -HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GNQRRIQCLKY-LVLANMLMESEVNPFDGQEAKPY--- 289 (428)
Q Consensus 217 -~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~--~~~~~~~~l~y-~~L~~lL~~~~~~~~~~~~~~~~--- 289 (428)
+|.+++.++.+.|.++...++|..++.+++..+.+++.. .++.....+.| +++|+++ ++.+++|+....+|+
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all-~~~i~~f~eLL~~p~i~~ 241 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALL-GDKIYNFGELLHHPIMET 241 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHH-CCSSCSTHHHHHSCCTTS
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHc-CCCCCChHHHhCChHHHH
Confidence 578999999999999999999999999999999888743 33444445555 5556655 566788887666664
Q ss_pred -CCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhh--ccccccchhhHHhHhC
Q 014255 290 -KNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLI--KPYTRIRIPFISKELN 366 (428)
Q Consensus 290 -~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~--~pYs~I~l~~iA~~l~ 366 (428)
.++|+..|+..|+++|..|++.+|+..+..+. ...|.+..|...+.+++|..++..++ +||++|+++.||+.++
T Consensus 242 L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~---~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~ 318 (393)
T 4b4t_O 242 IVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQI---SKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATH 318 (393)
T ss_dssp SCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHH---HHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHT
T ss_pred hhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhh---hhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhC
Confidence 45788999999999999999999998876654 34589999999999999999999886 6789999999999999
Q ss_pred CChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc-------CCccchHHHHHHHHHHHHHHHHHhh
Q 014255 367 VPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD-------RSKGMKKYTAIDKWNSQLRKKRRDN 425 (428)
Q Consensus 367 l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~-------~~~~~~~~~~l~~w~~~v~~l~~~~ 425 (428)
+|+++||.+|++||.+|+|.|+|||++|+|++++ +++...+.++|..|+++|+++++.-
T Consensus 319 i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~v 384 (393)
T 4b4t_O 319 LPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKM 384 (393)
T ss_dssp CCHHHHHHHHHHHHHHSCSSSCEETTTTEECC----------------------------------
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986 3455678899999999999997653
No 6
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.2e-22 Score=199.98 Aligned_cols=232 Identities=13% Similarity=0.116 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhh--cchhH
Q 014255 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GNQRR 260 (428)
Q Consensus 183 e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~--~~~~~ 260 (428)
-++-+..|.|+..+.+..|..+..++.-..+ -.....++.+..|.|++++.+++|.+|..+|..||...+.. .....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 3555667899999999999988877631101 01233457889999999999999999999999999865432 33467
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCcccccccCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHH
Q 014255 261 IQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKN 340 (428)
Q Consensus 261 ~~~l~y~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~ 340 (428)
..+++|+++|.||.|.-.. ...+..+.-...+.++..|++||..||+..|...++.|+..|..|... ..+..+...
T Consensus 311 ~~a~K~lI~V~LLlG~iP~---r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty-~LI~rLr~~ 386 (523)
T 4b4t_S 311 QQSNKLHCCIQLLMGDIPE---LSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-QLCVRLRSN 386 (523)
T ss_dssp HHHHHHHHHHHHHHTCCCC---HHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT-HHHHHHHHH
T ss_pred HHHHHHHHhHHhhcCCCCC---hHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh-HHHHHHHHH
Confidence 8899999999999876321 111121211134667889999999999999999999999999999875 467888999
Q ss_pred HHHHHHHHhhccccccchhhHHhHhCCC-hHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHHHHHHHHH
Q 014255 341 VRTQVLLKLIKPYTRIRIPFISKELNVP-EKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLR 419 (428)
Q Consensus 341 i~~~~l~~~~~pYs~I~l~~iA~~l~l~-~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~ 419 (428)
++.++++++..+|++|++++||..++++ ++++|..|++||.+|.|+|.|||.+|+|.+.+..+.-...+....+..+|+
T Consensus 387 vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI~ 466 (523)
T 4b4t_S 387 VIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIK 466 (523)
T ss_dssp HHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC---------------
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccccccccHHHHHHHHHHHH
Confidence 9999999999999999999999999995 788999999999999999999999999999876554344444444444443
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=169.10 Aligned_cols=171 Identities=15% Similarity=0.227 Sum_probs=141.7
Q ss_pred hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcchHHHH
Q 014255 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMT 299 (428)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~ 299 (428)
-+..+..+.|++++.+++|.+|..+|.+||..++..+...+..+++|++++.||.|+ +.++.. ..+|. ...+.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~-iP~~~l--l~~~~----~~~y~ 84 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGH-MPTVEL--LKKYH----LMQFA 84 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTC-EECHHH--HHHTT----CGGGH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCC-CCCHHH--hhhCc----hhHHH
Confidence 345788999999999999999999999999998887777889999999999999875 433222 12332 12477
Q ss_pred HHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhc------cccccchhhHHhHhC------C
Q 014255 300 NLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIK------PYTRIRIPFISKELN------V 367 (428)
Q Consensus 300 ~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~------pYs~I~l~~iA~~l~------l 367 (428)
.|++|+..||+..|.++++++++.|..|.. -.+.++++..+++.+++ +|++|+++.|+..++ +
T Consensus 85 ~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~-----~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~ 159 (203)
T 3t5x_A 85 EVTRAVSEGNLLLLHEALAKHEAFFIRCGI-----FLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDV 159 (203)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHHHTC-----HHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHhHHHHHHCCh-----HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCC
Confidence 999999999999999999998875555543 44567777777777665 899999999999995 4
Q ss_pred ChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 368 PEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 368 ~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
+.+|||.+|++||.+|.|+|.||+.+|++++.+.+
T Consensus 160 ~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 160 DIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp CHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSC
T ss_pred CHHHHHHHHHHHHHcCceEEEEcccccEEEECCCC
Confidence 88999999999999999999999999999988654
No 8
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.3e-17 Score=167.57 Aligned_cols=246 Identities=17% Similarity=0.185 Sum_probs=179.8
Q ss_pred cHHHHHHHHHHHHhhccCCCCCc--c--hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC----hh-hH
Q 014255 151 EYGRMSKILKELHKSCQREDGTD--D--QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH----PR-IM 221 (428)
Q Consensus 151 ~~~~A~~~l~el~~~~~~~~~~~--d--~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~----p~-~~ 221 (428)
..++|..++.+.=..|-+.-+.+ + +.++...+-+.....++|+++++..-|+..++..... +.+++ |. -+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccce
Confidence 45678888888888875421110 1 1123344444455569999999999999888755432 22222 33 45
Q ss_pred HHHHHhhhHhHHhhhcHHHHHHHHHHHHHh-hhhh-----cchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcch
Q 014255 222 GIIRECGGKMHMAERQWADAATDFFEAFKN-YDEA-----GNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEI 295 (428)
Q Consensus 222 ~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~-~~~~-----~~~~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~~~~~~~~ 295 (428)
..+..|.|++++.+++|.+|..+|.+||.. ++.. ....+..+++|++.+.||.|.- |-.+...+++ .|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~--P~~~ll~k~~--~~~L 295 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM--VKWGPLRPFL--SQET 295 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC--BCHHHHGGGS--CHHH
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC--CCHHHHcccc--hHHH
Confidence 678899999999999999999999999998 6533 2356778999999999998753 2112222333 2667
Q ss_pred HH-HHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHH----HHHHHHHHHHhhccc--cccchhhHHhHhC--
Q 014255 296 LA-MTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLL----KNVRTQVLLKLIKPY--TRIRIPFISKELN-- 366 (428)
Q Consensus 296 ~~-l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~----~~i~~~~l~~~~~pY--s~I~l~~iA~~l~-- 366 (428)
.. +..|++|+..||+..|.++++.++..|..+..+-.-+..+. +++..+.+..++.+| ++|+++.++..++
T Consensus 296 ~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~ 375 (455)
T 3t5v_B 296 IDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLS 375 (455)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhc
Confidence 66 88999999999999999999999988887766322233332 333333333346778 8999999999987
Q ss_pred -------------------CChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 367 -------------------VPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 367 -------------------l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
++.++||.+|++||.+|.|+|.||+..|+|++.+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 376 IGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred cCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 57899999999999999999999999999999876
No 9
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.69 E-value=9.7e-18 Score=128.66 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCcc
Q 014255 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG 404 (428)
Q Consensus 332 ~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~ 404 (428)
.|+..|.+++.++||+.+++||++|++++||+.|++|++++|.+|++||.+|+|.|+|||++|+|+|.++++.
T Consensus 7 ~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 7 GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 3667889999999999999999999999999999999999999999999999999999999999999877654
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=99.34 E-value=4.7e-12 Score=110.12 Aligned_cols=131 Identities=15% Similarity=0.238 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCcccccc---cCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHH
Q 014255 263 CLKYLVLANMLMESEVNPFDGQEAKP---YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLK 339 (428)
Q Consensus 263 ~l~y~~L~~lL~~~~~~~~~~~~~~~---~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~ 339 (428)
.+.-+++.++.+ +.+..|+....+| ...+++..|+..|+++|..|++..|...-.. + |.+. ..+.+
T Consensus 25 ~a~~li~~Al~~-p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~----~---p~L~---~~~~~ 93 (169)
T 3chm_A 25 ALGPLIIEATSH-PSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATR----L---PHLS---PDQIL 93 (169)
T ss_dssp GHHHHHHHHHHC-TTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGG----S---CCCC---HHHHH
T ss_pred HHHHHHHHHhcC-CCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHh----C---cchH---HHHHH
Confidence 455677777764 4455676554444 1224557899999999999999999874221 1 3333 67889
Q ss_pred HHHHHHHHHhhccccccchhhHHhHhCCC-hHHHHHHHH-HHHHcCceeEEEecCCCEEEEccCCcc
Q 014255 340 NVRTQVLLKLIKPYTRIRIPFISKELNVP-EKDVEQLLV-SLILDNRIDGHIDQVNRLLERGDRSKG 404 (428)
Q Consensus 340 ~i~~~~l~~~~~pYs~I~l~~iA~~l~l~-~~~vE~~l~-~lI~~g~i~g~IDq~~g~v~~~~~~~~ 404 (428)
++|...++.+..--+.|+++.|++.++++ +++||.+|+ ++|..|.|.|+|||++++|++++..+|
T Consensus 94 KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R 160 (169)
T 3chm_A 94 KLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGR 160 (169)
T ss_dssp HHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCT
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCC
Confidence 99999999998778999999999999999 999999999 999999999999999999999986554
No 11
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.28 E-value=2.5e-09 Score=104.38 Aligned_cols=238 Identities=12% Similarity=0.029 Sum_probs=179.5
Q ss_pred cchhhHHHHHHhhcccC-CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 014255 12 EFTVSRVLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90 (428)
Q Consensus 12 ~~~~~~~~~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k 90 (428)
.+..+....+-.|.... .+++++|++.|++.++..+++......++..++.+|...|+++++.+++.+.+...+.....
T Consensus 4 ~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 33444444455554443 45799999999999998776666567899999999999999999999999998886333334
Q ss_pred hHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhcc-------------------
Q 014255 91 NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE------------------- 151 (428)
Q Consensus 91 ~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~------------------- 151 (428)
.....+...+...+.... +.+.....++.+++......+......+...+|.+|...|+
T Consensus 84 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLG--NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 444555555555554322 36667778888777665544444555778899999999999
Q ss_pred -HHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhH
Q 014255 152 -YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGK 230 (428)
Q Consensus 152 -~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~ 230 (428)
+++|.+.+.+......... + .......+...+.++...|++.+|..++.++..+.....++...+......|.
T Consensus 162 ~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 235 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALG---D---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc---C---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999988877655431 2 14456778888899999999999999999998887776666666667777899
Q ss_pred hHHhhhcHHHHHHHHHHHHHhhhhhcc
Q 014255 231 MHMAERQWADAATDFFEAFKNYDEAGN 257 (428)
Q Consensus 231 ~~~~~~~y~~A~~~f~ea~~~~~~~~~ 257 (428)
++...|+|.+|..+|-++...+...++
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999876655444
No 12
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=3.4e-09 Score=99.96 Aligned_cols=222 Identities=12% Similarity=0.025 Sum_probs=170.8
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|++.|++.++..+++......++..++.+|...|+++++.+++.+.+...+..........+...+...+...
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 34679999999999999887666666789999999999999999999999999888633333444455555555555442
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhcc--------------------HHHHHHHHHHHHhhcc
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE--------------------YGRMSKILKELHKSCQ 167 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~--------------------~~~A~~~l~el~~~~~ 167 (428)
. +.+.....++.+++......+......+...+|.++...|+ +++|.+.+.+......
T Consensus 97 g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 97 G--NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 36667778888777666544444555777899999999999 9999999988776654
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHH
Q 014255 168 REDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (428)
Q Consensus 168 ~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~e 247 (428)
... + .......+...+.++...|++.+|..++.++........++...+......|.++...++|.+|..+|-+
T Consensus 175 ~~~---~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 175 ALG---D---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHT---C---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcC---C---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 321 1 1345667778889999999999999999999877666556666666777778999999999999999999
Q ss_pred HHHhhhhhcc
Q 014255 248 AFKNYDEAGN 257 (428)
Q Consensus 248 a~~~~~~~~~ 257 (428)
+.......++
T Consensus 249 al~~~~~~~~ 258 (338)
T 3ro2_A 249 TLLLARQLKD 258 (338)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhhcc
Confidence 9876655544
No 13
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=5.2e-09 Score=102.95 Aligned_cols=222 Identities=17% Similarity=0.089 Sum_probs=171.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|++.|++.++..+++......++..++.+|...|+++++.+++.+.+...+..........+...+...+...
T Consensus 60 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 34679999999999999887766666789999999999999999999999999988633333444555555565555442
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhcc-----------------HHHHHHHHHHHHhhccCCC
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE-----------------YGRMSKILKELHKSCQRED 170 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~-----------------~~~A~~~l~el~~~~~~~~ 170 (428)
. +.+.....++.+++......+......+...+|.+|...|+ +++|.+.+.+.........
T Consensus 140 g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 140 G--RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp T--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C--CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 2 36667778888877666544445556778899999999999 9999999988777653321
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 171 ~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+ .......+...+.++...|++.+|..++.++..+.....++...+......|.++...++|.+|..+|-++..
T Consensus 218 ---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 218 ---D---RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp ---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ---C---HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 1345667778889999999999999999999877666555555666777778999999999999999999987
Q ss_pred hhhhhcc
Q 014255 251 NYDEAGN 257 (428)
Q Consensus 251 ~~~~~~~ 257 (428)
.....++
T Consensus 292 ~~~~~~~ 298 (411)
T 4a1s_A 292 LAVELGE 298 (411)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 7655543
No 14
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.17 E-value=1e-08 Score=100.67 Aligned_cols=211 Identities=10% Similarity=-0.013 Sum_probs=159.2
Q ss_pred CCCCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDF 103 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~ 103 (428)
..+++++|++.|++.++.-. .+......++..++.+|...|+++++++++.+.+... +..+ ......+...+...
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY-KEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCSTTHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHH
Confidence 35789999999999988633 2334467899999999999999999999999999998 4332 45556666666666
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHH
Q 014255 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (428)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (428)
+.... +.+...+.++.+++.....++......+...+|.+|...|++++|.+.+++......... + ......
T Consensus 194 ~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~ 265 (383)
T 3ulq_A 194 FLDLK--QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN---I---LPSLPQ 265 (383)
T ss_dssp HHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---GGGHHH
T ss_pred HHHhc--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc---c---chhHHH
Confidence 65433 367788888888887666555556667888999999999999999999999988654321 1 123467
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhc---HHHHHHHHHHH
Q 014255 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQ---WADAATDFFEA 248 (428)
Q Consensus 184 ~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~---y~~A~~~f~ea 248 (428)
.+...+.++...|++.+|..++.++..+.....+|.....+.. .|.++...++ +.+|...|-+.
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF-LKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHHHC
Confidence 7888889999999999999999999888776667666555333 5666777777 55555555443
No 15
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.16 E-value=1.2e-08 Score=99.51 Aligned_cols=222 Identities=16% Similarity=0.066 Sum_probs=153.7
Q ss_pred CCCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHHhh
Q 014255 29 ETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGK--------------------YKEMMDAYREMLTYIKS 86 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~--------------------~~~l~e~~~~l~~~~~~ 86 (428)
.+++++|++.|.+.++..+ .+......++..++.+|...|+ ++++.+++.+.+...+.
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777777766543 1223345667777777777777 77777777777666522
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 87 AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 87 ~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
.............+...+.... +.+.....++.+++......+......+...+|.+|...|++++|...+.+.....
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT--BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 2223333444444444433212 25556667777766555443334444677799999999999999999999988776
Q ss_pred cCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHH
Q 014255 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFF 246 (428)
Q Consensus 167 ~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ 246 (428)
.... + .......+...+.++...|++.+|..++.++..+.....++...+......|.++...|+|.+|..+|-
T Consensus 258 ~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 258 RQLK---D---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhCc---C---chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4321 2 234567777888999999999999999999988877766666666667777899999999999999999
Q ss_pred HHHHhhhhhcch
Q 014255 247 EAFKNYDEAGNQ 258 (428)
Q Consensus 247 ea~~~~~~~~~~ 258 (428)
++.......+++
T Consensus 332 ~al~~~~~~~~~ 343 (406)
T 3sf4_A 332 KHLEISREVGDK 343 (406)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhcCC
Confidence 998877666543
No 16
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=4.9e-09 Score=98.82 Aligned_cols=110 Identities=15% Similarity=0.021 Sum_probs=55.6
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
.+...+|.++...|++++|.+.+++......... + .......+...+.++...|++.+|..++.++........
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---D---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc---c---hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 3444556666666666666655555554433210 1 122344444555555566666666666655554444333
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
++..........|.++...|++.+|..+|-++...+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 333334444444555555666666666655554433
No 17
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=3.1e-08 Score=97.14 Aligned_cols=185 Identities=11% Similarity=0.037 Sum_probs=143.3
Q ss_pred CCCCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDF 103 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~ 103 (428)
..+++++|++.|++.++.-+ .+......++..++.+|...|+++++++++.+.+..+ +..+ ......+...+...
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY-QNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HhCCCchhhHHHHHHHHHHH
Confidence 46789999999999987643 2334568899999999999999999999999999988 4322 34566666677666
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHH
Q 014255 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (428)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (428)
+.... +.+...+.++.+++..+..++......+...||.+|...|++++|.+.+.+........ .+ .....
T Consensus 192 y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~----~~~~~ 262 (378)
T 3q15_A 192 YDDFK--HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VP----DLLPK 262 (378)
T ss_dssp HHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CG----GGHHH
T ss_pred HHHhC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CC----hhHHH
Confidence 65433 36778888888888776655555666788899999999999999999999988865421 12 22367
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHH
Q 014255 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (428)
Q Consensus 184 ~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~ 222 (428)
.+...+.++...|++.+|..+++++..+.....+|....
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 788888999999999999999999988776655554443
No 18
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.11 E-value=1.2e-08 Score=100.27 Aligned_cols=221 Identities=13% Similarity=0.024 Sum_probs=140.1
Q ss_pred CCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHHHhhhhhh
Q 014255 30 TDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGK-----------------YKEMMDAYREMLTYIKSAVTR 90 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~-----------------~~~l~e~~~~l~~~~~~~~~k 90 (428)
+++++|++.|++.++..+ .+......++..++.+|...|+ ++++++++.+.+...+.....
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 455666666666555422 1122345566666666666666 666666666665554222122
Q ss_pred hHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCC
Q 014255 91 NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (428)
Q Consensus 91 ~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~ 170 (428)
.........+...+.... +.+.....++.+++......+......+...+|.+|...|++++|.+.+.+.........
T Consensus 220 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLG--DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 223333333333333212 255566666666665444333333345667899999999999999998888877754321
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 171 ~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+ .......+...+.++...|++.+|..++.++..+.....++...+......|.++...|+|.+|..+|-++..
T Consensus 298 ---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 298 ---E---REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp ---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---C---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 1344677777888899999999999999988777665555555555666678888899999999999999988
Q ss_pred hhhhhcch
Q 014255 251 NYDEAGNQ 258 (428)
Q Consensus 251 ~~~~~~~~ 258 (428)
.+...+++
T Consensus 372 ~~~~~~~~ 379 (411)
T 4a1s_A 372 LAXXXXXX 379 (411)
T ss_dssp HCCHHHHH
T ss_pred HHhhcccc
Confidence 77666554
No 19
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=2.8e-08 Score=91.45 Aligned_cols=218 Identities=13% Similarity=0.054 Sum_probs=152.9
Q ss_pred CCCCHHHHHHHHHHhhcCCC----ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIM 101 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~~k~~~~k~v~~il 101 (428)
..+++++|++.|++.++.-. .+......++..++.+|...|+++++.+++.+.+...+.. ........+...+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34567778887777776321 1223468899999999999999999999999999886222 12344556666666
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHHh--hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhh
Q 014255 102 DFVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (428)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~le~l~~~--~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~ 179 (428)
..+.... +.+.....++.+++..+.. .+..........+|.++...|++++|.+.+.+....+....+.++ .
T Consensus 93 ~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~ 166 (283)
T 3edt_B 93 VLYGKRG--KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD----P 166 (283)
T ss_dssp HHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC----H
T ss_pred HHHHHhc--cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC----H
Confidence 6665433 3666777888877765543 122344567779999999999999999999998887533222222 3
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-------------------------------------------C
Q 014255 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-------------------------------------------P 216 (428)
Q Consensus 180 ~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i-------------------------------------------~ 216 (428)
.....+...+.++...|++.+|..++.++....... .
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 456777888899999999999999999987652210 0
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
++..........|.++...|+|.+|...|-++.+.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11122334455688888899999999988887653
No 20
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=7.6e-08 Score=91.87 Aligned_cols=211 Identities=7% Similarity=-0.020 Sum_probs=150.5
Q ss_pred CCHHHHHHHHHHhhcCCC-------ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 014255 30 TDPEGALAGFAEVVAMEP-------EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~-------~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~ 102 (428)
+++++|.+++++..+..+ .+.+.....+.+++.+|...|+|+++++.|.+.+......-..........++..
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777776654211 1223346677888999999999999999999999987333344556677777777
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHH
Q 014255 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (428)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~ 182 (428)
.+....+ .+.....++.+++.....++.........++|.+|.. |++++|.+.+++........ .+ .....
T Consensus 85 ~~~~~g~--~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~---~~---~~~~~ 155 (307)
T 2ifu_A 85 MLKDLQR--MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE---ER---LRQAA 155 (307)
T ss_dssp HHHHTTC--GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---TC---HHHHH
T ss_pred HHHhCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---CC---hhHHH
Confidence 6654322 5566778888877654433333444677799999998 99999999999888775432 11 13446
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHH
Q 014255 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (428)
Q Consensus 183 e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (428)
..+...+.++..+|++.+|..+++++..+......+...+......|.++...++|..|..+|-++.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777888999999999999999999987765544433344455666788888899999888877764
No 21
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.01 E-value=8.5e-08 Score=89.77 Aligned_cols=217 Identities=14% Similarity=0.104 Sum_probs=153.9
Q ss_pred CCCHHHHHHHHHHhhcCCC----ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMD 102 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~~k~~~~k~v~~il~ 102 (428)
.+++++|++.|++.++... .+......++..++.+|...|+++++.+++.+.+...+.. ............+..
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4679999999999987421 1234457889999999999999999999999999886222 122344555556666
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHh--hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhh
Q 014255 103 FVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (428)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~le~l~~~--~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~ 180 (428)
.+.... +.+.....++.+++..+.. .+......+...+|.++...|++++|.+++++.........+.++ ..
T Consensus 120 ~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----~~ 193 (311)
T 3nf1_A 120 LYGKRG--KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD----PN 193 (311)
T ss_dssp HHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC----HH
T ss_pred HHHHcC--cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC----HH
Confidence 555422 3666777777777654432 222344566779999999999999999999999887544322222 34
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-------------------------------------------CC
Q 014255 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-------------------------------------------PH 217 (428)
Q Consensus 181 ~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i-------------------------------------------~~ 217 (428)
....+...+.++...|++.+|..++.++....... ..
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 56777788899999999999999999987542210 01
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
....+......|.++...|+|.+|..+|-+++..
T Consensus 274 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 274 SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1123344556688888999999999999888653
No 22
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=2.6e-07 Score=87.44 Aligned_cols=236 Identities=10% Similarity=0.024 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
...+.+.+.+|...|+|+++++.|.+.+............+....++...+....+ .+.....++.+++.....++..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--SVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHcCCHH
Confidence 44555567777888888888888888877762222334445666666666554222 5556666666666443322222
Q ss_pred HHHHHhHHHHHHHHhh-ccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 134 LWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 134 l~lr~~~~La~l~~~~-g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
....+..++|.+|... |++++|.+.+++........ .+ .....+++...+.++..+|++.+|...++++..+.
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QS---VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2335667999999996 99999999999988875432 11 12335677778899999999999999999998765
Q ss_pred ccCCChh-hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCC
Q 014255 213 SAIPHPR-IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKN 291 (428)
Q Consensus 213 ~~i~~p~-~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~~~~~~~~~~~~~ 291 (428)
....... .........|.++...|+|..|..+|-++....+....
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---------------------------------- 234 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---------------------------------- 234 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------------------------------------
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC----------------------------------
Confidence 4433222 22334555688888999999998887776431111000
Q ss_pred CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHH
Q 014255 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIR 331 (428)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~ 331 (428)
..+...+..+..++..++...|...+..+...+..||...
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 0112234455556666666667777777766666777643
No 23
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=1.9e-07 Score=88.31 Aligned_cols=193 Identities=9% Similarity=0.033 Sum_probs=136.2
Q ss_pred hhHHHHHHhhccc--CCCCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 014255 15 VSRVLCSILEKGL--VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90 (428)
Q Consensus 15 ~~~~~~~~~ak~~--~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k 90 (428)
-.++.+|..|-.+ ..+++++|++.|.+.++..+ .+......++.+++.+|...|++++++++|++.+.........
T Consensus 34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 113 (292)
T 1qqe_A 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3344445444322 25679999999999988643 2233357899999999999999999999999999987222234
Q ss_pred hHHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCC
Q 014255 91 NYSEKCINNIMDFVSGS-ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (428)
Q Consensus 91 ~~~~k~v~~il~~~~~~-~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~ 169 (428)
...+....++...+... . +.+.....|+.+++......+......+..++|.++...|+|++|.+.+++........
T Consensus 114 ~~~a~~~~~lg~~~~~~lg--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLH--DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 44566677777776642 3 36678888888887654422222334667799999999999999999999998876532
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014255 170 DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 170 ~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (428)
+ .. .....+.+...+.++...|++.+|..+++++..+.+.
T Consensus 192 ~---~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 192 R---LS--QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp T---TT--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred C---cc--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1 10 0123446667778899999999999999988765443
No 24
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.86 E-value=5.1e-07 Score=88.37 Aligned_cols=207 Identities=9% Similarity=-0.010 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh-hhH
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ERL 134 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~-~kl 134 (428)
.+-..|..+...|+++++++++.+.+...+........+.+...+...+.... +.+.....++.+++......+ ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhCCCchhh
Confidence 44556889999999999999999999887332334556666667766655433 366778888888887665433 334
Q ss_pred HHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014255 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 135 ~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (428)
...+...+|.+|...|+|++|.+.+.+........+ + ......++...+.+|...|++.+|..++.+|..+...
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ---N---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---C---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 457778999999999999999999999888765431 2 1355677788889999999999999999999876655
Q ss_pred CCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHh
Q 014255 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 273 (428)
Q Consensus 215 i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL 273 (428)
..+|.. +......|.++...|+|.+|..+|-++.......+++..... +..+..+.
T Consensus 255 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~ly 310 (378)
T 3q15_A 255 KVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL--FLFLQAVY 310 (378)
T ss_dssp HCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH--HHHHHHHH
T ss_pred hCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Confidence 555655 555666789999999999999999999887766666654332 34444443
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.5e-06 Score=77.28 Aligned_cols=199 Identities=13% Similarity=0.101 Sum_probs=137.1
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHhcC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDFVSG 106 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~~~~ 106 (428)
.+++++|++.|.+.++.+ ++ ..++..++.+|...|+++++++++.+.+... +... ..........+...+..
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 91 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKSFARIGNAYHK 91 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHHHHHHHHHHHH
Confidence 467999999999999876 32 5788999999999999999999999999876 4431 11113344444444333
Q ss_pred CCCCChhHHHHHHHHHHH-------------------HHHHh-hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 107 SASQNFSLLREFYQTTLK-------------------ALEEA-KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 107 ~~~~~~~~~~~~~~~~le-------------------~l~~~-~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
..+ .+.....++.+++ .++.+ ........+...+|.++...|++++|.+.+++.....
T Consensus 92 ~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 92 LGD--LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp TTC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccc--HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 222 3344444444443 11111 0111122456689999999999999999999988874
Q ss_pred cCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHH
Q 014255 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFF 246 (428)
Q Consensus 167 ~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ 246 (428)
+. + ...+...+.++...|++.+|...+.++....+. + ...+...|.++...|++.+|..+|-
T Consensus 170 ~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 170 PE-----D-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--F----VRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cc-----c-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--H----HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 31 1 356667778899999999999999988765321 1 2334455888889999999999999
Q ss_pred HHHHhhh
Q 014255 247 EAFKNYD 253 (428)
Q Consensus 247 ea~~~~~ 253 (428)
.+.....
T Consensus 232 ~a~~~~~ 238 (258)
T 3uq3_A 232 AARTKDA 238 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHhCh
Confidence 9877554
No 26
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.83 E-value=1.4e-06 Score=85.23 Aligned_cols=203 Identities=7% Similarity=0.026 Sum_probs=152.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh-hhHHHHH
Q 014255 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ERLWFKT 138 (428)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~-~kl~lr~ 138 (428)
.|.++...|+++++++++.+.+...+..-.....+.+...+...+.... +.+.....++.+++......+ ......+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--QTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 6788999999999999999999986332234445666666666655433 366778888888887665433 3444577
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH- 217 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~- 217 (428)
...+|.+|...|+|++|.+.+.+........+ + .......+...+.+|...|++.+|..++.+|..+.....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---Q---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---C---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 88999999999999999999999888765431 2 2455677788889999999999999999999887666666
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 273 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL 273 (428)
|.. +......|.++...|+|.+|..+|-++.......+++..... +..++.+.
T Consensus 261 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~~~ 313 (383)
T 3ulq_A 261 PSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE--FEFLKSLY 313 (383)
T ss_dssp GGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHH
T ss_pred hhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Confidence 543 555566788999999999999999999887766666544333 44455554
No 27
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.79 E-value=3.2e-06 Score=78.88 Aligned_cols=197 Identities=13% Similarity=0.139 Sum_probs=142.5
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHH
Q 014255 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (428)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~--~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~ 128 (428)
.....++..++.++...|+++++.+++.+.+...+... .......+...+...+.... +.+.....++.+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKDAANLLNDALAIREK 101 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999863322 23444555555555554322 356677777777775544
Q ss_pred h--hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 014255 129 A--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (428)
Q Consensus 129 ~--~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~ 206 (428)
. .+......+...+|.++...|++++|.+.+.+.........|.+. ......+...+.++...|++.+|..++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH----PDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 233444567779999999999999999999998877532111111 3456777788899999999999999999
Q ss_pred HHHhhhccCC--ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 207 KALAIKSAIP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 207 ~a~~~~~~i~--~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
++........ ++..........|.++...|+|.+|...|-++.....
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9977654432 2223344556668899999999999999999987543
No 28
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=8.9e-07 Score=83.54 Aligned_cols=198 Identities=11% Similarity=0.042 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY-SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~-~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~ 131 (428)
....+.+.+..+...|+++++.+++.+.+... +..+... .......+...+.... +.+.....++.+++......+
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHTCCCCSC
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHhccccc
Confidence 35566677888999999999999999988754 3222211 1223333444443312 355667777776663222122
Q ss_pred hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 132 ~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
......+...+|.+|...|+|++|.+++++........++ + ......++...+.+|..+|++.+|..++.+|..+
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~---~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--N---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--c---hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2233466779999999999999999999998876544322 2 2456778888999999999999999999999887
Q ss_pred hccCCChhhHHHHHHhhhHhHHhhh-cHHHHHHHHHHHHHhhhhhcch
Q 014255 212 KSAIPHPRIMGIIRECGGKMHMAER-QWADAATDFFEAFKNYDEAGNQ 258 (428)
Q Consensus 212 ~~~i~~p~~~~~i~~~~g~~~~~~~-~y~~A~~~f~ea~~~~~~~~~~ 258 (428)
.....+....+..+...|.++...| +|.+|..+|.+|..-+...++.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 7665555556777777899999888 5799999999998877665554
No 29
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=4.7e-07 Score=85.45 Aligned_cols=188 Identities=11% Similarity=0.059 Sum_probs=139.9
Q ss_pred cCCCCHHHHHHHHHHhhcCCCccchh--hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 014255 27 LVETDPEGALAGFAEVVAMEPEKAEW--GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~--~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (428)
+..+++++|++.++++++..+...+. ....+..++.++...|+++++++++.+.+..............+...+...+
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 44678999999999998866533221 1345556899999999999999999999986412222333445566666666
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHh-hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHH
Q 014255 105 SGSASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (428)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~le~l~~~-~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (428)
.... +.+.....++.+++..+.. .+......+...+|.+|...|+|++|.+++.+......... + ......
T Consensus 166 ~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~---~---~~~~~~ 237 (293)
T 3u3w_A 166 AENG--YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---S---MALIGQ 237 (293)
T ss_dssp HHTT--CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---B---CTTHHH
T ss_pred HHcC--CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC---c---HHHHHH
Confidence 5433 3778888999998877665 34456668888999999999999999999999888765431 2 245578
Q ss_pred HHHHHHHHHHhhc-CHHHHHHHHHHHHhhhccCCChhhHH
Q 014255 184 VYAIEIQMYTETK-NNKKLKQLYQKALAIKSAIPHPRIMG 222 (428)
Q Consensus 184 ~~l~e~~l~~~~~-d~~ka~~~l~~a~~~~~~i~~p~~~~ 222 (428)
++...+.+|..+| ++.+|..++.+|..+.....++....
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~~~ 277 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKE 277 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGGGG
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 8888899999999 57999999999988776665555443
No 30
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=1.7e-06 Score=81.66 Aligned_cols=198 Identities=11% Similarity=0.036 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k-~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...+...+..+...|+++++.+++...++.. +..+. .........+...+.... +.+...+.++.+++......+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCch
Confidence 4455667888999999999999999888764 22111 111122222333333212 2555566666655432221222
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+...+|.+|...|+|++|.+++++........++ + ....+.++...+.+|...|++.+|..++.+|..+.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~---~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--N---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--c---ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 233467779999999999999999999998865433221 1 12334678888899999999999999999998776
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHH-HHHHHHHHHhhhhhcchh
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADA-ATDFFEAFKNYDEAGNQR 259 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A-~~~f~ea~~~~~~~~~~~ 259 (428)
....++...+..+...|.++...|+|.+| ..+|-++..-+...+++.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~ 274 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHh
Confidence 55444555677777789999999999999 777888877666655544
No 31
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.70 E-value=2.3e-06 Score=81.40 Aligned_cols=175 Identities=9% Similarity=0.057 Sum_probs=132.7
Q ss_pred CCCHHHHHHHHHHhhcCCC--ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC
Q 014255 29 ETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (428)
.+++++|++.|.+.++..+ .+......++.+++.+|...|++++++++|++.+.................++...+..
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 4678999999999887654 22334578999999999999999999999999999873333344566777778777765
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHH
Q 014255 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (428)
Q Consensus 107 ~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (428)
. +.+...+.|+.+++......+......+..++|.+|...|+|++|.+.+++......... + .......++
T Consensus 129 -g--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~ 199 (307)
T 2ifu_A 129 -L--DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME---N---YPTCYKKCI 199 (307)
T ss_dssp -T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHH
T ss_pred -C--CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---C---hhHHHHHHH
Confidence 3 477788889888886554333334447778999999999999999999999988754321 1 123345677
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014255 187 IEIQMYTETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 187 ~e~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (428)
..+.++...|++.+|..+++++. ...
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 77788899999999999999987 543
No 32
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.69 E-value=5.1e-06 Score=72.69 Aligned_cols=187 Identities=10% Similarity=0.089 Sum_probs=132.2
Q ss_pred cCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC
Q 014255 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (428)
+..+++++|++.++.+.. ++ .....++..++.++...|+++++.+++.+.+...+..........+...+...+..
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP---ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-Ch---HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 346789999995555532 22 22478999999999999999999999999999874433444455555555555544
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhh-HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHH
Q 014255 107 SASQNFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (428)
Q Consensus 107 ~~~~~~~~~~~~~~~~le~l~~~~~~k-l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~ 185 (428)
.. +.+.....++.+++..+..++.. ....+...+|.++...|++++|...+.+......... + .......+
T Consensus 79 ~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~ 150 (203)
T 3gw4_A 79 AG--NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD---D---QVAIACAF 150 (203)
T ss_dssp TT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc---c---hHHHHHHH
Confidence 22 36667788888887766544233 4456777999999999999999999998887654321 2 13445666
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHH
Q 014255 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIR 225 (428)
Q Consensus 186 l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~ 225 (428)
...+.++...|++.+|..++.++..+.....++...+...
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 190 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELM 190 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7778899999999999999999988777766665554443
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.68 E-value=4e-06 Score=75.50 Aligned_cols=192 Identities=14% Similarity=0.101 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh-cCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV-SGS 107 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~-~~~ 107 (428)
.+++++|+..|++.++.+|++ ..++..++.++...|+++++++.+++.+... |........-.. +.... ...
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~--~~~~~~~~~ 90 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE--AYVALYRQA 90 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH--HHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH--HHHHhhhhh
Confidence 467999999999999998865 5678899999999999999999999999876 543222111111 11110 000
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhh-hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~-~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (428)
+. .......++.+++.++.+.. ..-.......+|.++...|++++|.+.+++..... . + .+.+.
T Consensus 91 ~~--~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-----~-------~~~~~ 155 (217)
T 2pl2_A 91 ED--RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D-----T-------PEIRS 155 (217)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-----C-------HHHHH
T ss_pred hh--hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-----c-------hHHHH
Confidence 00 11111223333333332200 00112344588999999999999999999988773 1 1 24556
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 187 ~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
..+.++...|++.+|...++++....+. ++ .....-|.++...|++.+|...|-.+
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~--~~----~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK--DL----DLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT--CH----HHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6678889999999999999988765321 12 22334477788889999998887765
No 34
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=1.5e-06 Score=81.88 Aligned_cols=185 Identities=9% Similarity=0.025 Sum_probs=135.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCcc--chhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Q 014255 28 VETDPEGALAGFAEVVAMEPEK--AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~--~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (428)
..+++++|++.+.+.++..+.. ..........++.++...|+++++++++.+.+..............+...+...+.
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 4668999999999998876532 12234455668899999999999999999998765222223334556666666665
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhhhh-HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHH
Q 014255 106 GSASQNFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (428)
Q Consensus 106 ~~~~~~~~~~~~~~~~~le~l~~~~~~k-l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (428)
... +.+.....++.+++..+...+.. ....+...+|.+|...|+|++|.+++++........ .+ .......
T Consensus 167 ~~~--~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~---~~---~~~~~~~ 238 (293)
T 2qfc_A 167 ENG--YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI---NS---MALIGQL 238 (293)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TB---CSSHHHH
T ss_pred HcC--CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc---Cc---HHHHHHH
Confidence 433 37778888888887666543332 334678899999999999999999999988775432 12 2445778
Q ss_pred HHHHHHHHHhhcCHHHH-HHHHHHHHhhhccCCChhh
Q 014255 185 YAIEIQMYTETKNNKKL-KQLYQKALAIKSAIPHPRI 220 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka-~~~l~~a~~~~~~i~~p~~ 220 (428)
+...+.+|..+|++.+| ..++.+|..+.....++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 88889999999999999 8889999877766655544
No 35
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.64 E-value=1.5e-06 Score=83.96 Aligned_cols=197 Identities=12% Similarity=0.077 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh---------------hhHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---------------RNYS 93 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~---------------k~~~ 93 (428)
.+++++|++.|++.++.+|++ ..++..++.+|...|+++++++.+.+.+... +... -...
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHH
Confidence 346778888888877766543 4566777777777777777777777776653 3211 1111
Q ss_pred HHHHHHHHHHhcCCCC----------------------CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhcc
Q 014255 94 EKCINNIMDFVSGSAS----------------------QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE 151 (428)
Q Consensus 94 ~k~v~~il~~~~~~~~----------------------~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~ 151 (428)
.+..+.++......+. .+.+.....++.+++. ..+ .....+...+|.++...|+
T Consensus 153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGD-MIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH---SCS-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcC-ccCHHHHHHHHHHHHHCCC
Confidence 1222222221110000 0111222222222221 111 0012334577888888888
Q ss_pred HHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHh
Q 014255 152 YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM 231 (428)
Q Consensus 152 ~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~ 231 (428)
+++|.+.+++.....+. + ...+...+.++...|++.+|...+.++..... .. ...+...|.+
T Consensus 229 ~~~A~~~~~~al~~~p~-----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~-~~~~~~l~~~ 290 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPE-----D-------YSLWNRLGATLANGDRSEEAVEAYTRALEIQP-----GF-IRSRYNLGIS 290 (365)
T ss_dssp HHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----Cc-hHHHHHHHHH
Confidence 88888888877776321 1 23555566777788888888888887765421 11 2233444677
Q ss_pred HHhhhcHHHHHHHHHHHHHhh
Q 014255 232 HMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 232 ~~~~~~y~~A~~~f~ea~~~~ 252 (428)
+...|+|.+|..+|-.+....
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC
Confidence 777788888888888776544
No 36
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.61 E-value=3e-06 Score=73.44 Aligned_cols=152 Identities=13% Similarity=0.176 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|+++++.+|++ ..++..++.+|.+.|+++++++.+....... +.... ....+........
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAE-----AYYILGSANFMID 87 (184)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH-----HHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHH-----HHHHHHHHHHHcC
Confidence 467899999999999888765 5678888999999999999998888877654 32111 1111111111101
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+...+.+..+.+. .++ .......+|.+|...|++++|.+.+++.....+. ..+.+...
T Consensus 88 --~~~~a~~~~~~a~~~---~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~l 147 (184)
T 3vtx_A 88 --EKQAAIDALQRAIAL---NTV---YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------------FIRAYQSI 147 (184)
T ss_dssp --CHHHHHHHHHHHHHH---CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred --CHHHHHHHHHHHHHh---Ccc---chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------------hhhHHHHH
Confidence 122222322222221 000 1122335566666666666666666655554210 12344444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHh
Q 014255 189 IQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
+.+|...|++.+|...+++|..
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 5556666666666666665543
No 37
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.60 E-value=1e-05 Score=74.45 Aligned_cols=186 Identities=10% Similarity=0.112 Sum_probs=125.2
Q ss_pred HHHHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 014255 19 LCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (428)
Q Consensus 19 ~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (428)
..|..|... ..+++++|++.|+++++..|++ .+...++..++.+|...|+++++++.|+.++... |.
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~---------- 84 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QI---------- 84 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CC----------
Confidence 344455544 3457999999999999987753 3457899999999999999999999999998875 32
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHh--------hccHHHHHHHHHHHHhhccCC
Q 014255 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD--------MGEYGRMSKILKELHKSCQRE 169 (428)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~--------~g~~~~A~~~l~el~~~~~~~ 169 (428)
.|. . . .....+|..+.. .|++++|.+.++++....++.
T Consensus 85 ---------~~~--~--~---------------------~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 85 ---------DPR--V--P---------------------QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp ---------CTT--H--H---------------------HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred ---------Cch--h--H---------------------HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 011 0 0 113467777777 999999999999998876532
Q ss_pred CCCcchh-----hhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhh---------
Q 014255 170 DGTDDQK-----KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE--------- 235 (428)
Q Consensus 170 ~~~~d~~-----~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~--------- 235 (428)
+...+.. ......+.+...+.+|...|++.+|...++++....... + .........|.++...
T Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~-~~~~a~~~l~~~~~~~g~~~~~~~~ 207 (261)
T 3qky_A 131 ELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT--P-WADDALVGAMRAYIAYAEQSVRARQ 207 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS--T-THHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC--c-hHHHHHHHHHHHHHHhcccchhhcc
Confidence 1110000 000011112566788999999999999999886543221 1 1222233335555533
Q ss_pred -hcHHHHHHHHHHHHHhhh
Q 014255 236 -RQWADAATDFFEAFKNYD 253 (428)
Q Consensus 236 -~~y~~A~~~f~ea~~~~~ 253 (428)
++|.+|...|-.+...++
T Consensus 208 ~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 208 PERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHHCC
Confidence 999999999999987664
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.59 E-value=5.1e-06 Score=78.20 Aligned_cols=194 Identities=13% Similarity=0.032 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014255 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (428)
++++|++.|.+.++.+++. ..++..++.++...|+++++++.+.+.+... +...... ..+...+....
T Consensus 106 ~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~-----~~l~~~~~~~~-- 173 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKTY----GPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPM-----LYIGLEYGLTN-- 173 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTC----THHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHH-----HHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHH-----HHHHHHHHHHh--
Confidence 5677777777777665543 2445667777777777777777777777665 3322111 11222222111
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHH
Q 014255 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~ 190 (428)
+.+.....++.+++. ..+ ...+...+|.++...|++++|.+.+++.........+... .......+...+.
T Consensus 174 ~~~~A~~~~~~al~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~la~ 244 (330)
T 3hym_B 174 NSKLAERFFSQALSI---APE---DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT---VDKWEPLLNNLGH 244 (330)
T ss_dssp CHHHHHHHHHHHHTT---CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT---TTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh---CCC---ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc---ccHHHHHHHHHHH
Confidence 233344444444331 111 1234558999999999999999999999887644322111 1222456777788
Q ss_pred HHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 191 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 191 l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
++...|++.+|...++++...... + ...+...|.++...|+|.+|..+|-++...
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQ--N----ASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--C----SHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcc--c----hHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999765322 1 223444588888999999999999988653
No 39
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.59 E-value=1.4e-05 Score=76.78 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.+++++|++.|.++++.+|++ ..++..++.+|...|+++++++++.+.+...
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 128 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELK 128 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 457899999999999887654 5677889999999999999999999998875
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.58 E-value=6.5e-06 Score=74.76 Aligned_cols=190 Identities=11% Similarity=0.033 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|++.++..++. ..++..++.+|...|+++++.+++.+.+... +.. ......+...+....
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~-----~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEMEPKLADEEYRKALASD-SRN-----ARVLNNYGGFLYEQK 119 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCc-----HHHHHHHHHHHHHHh
Confidence 457899999999998876643 5678889999999999999999999998875 432 122233333332212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+...+.++.+++ .............+|.++...|++++|.+.+.+....... ....+...
T Consensus 120 --~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l 181 (252)
T 2ho1_A 120 --RYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------------QPSVALEM 181 (252)
T ss_dssp --CHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------CHHHHHHH
T ss_pred --HHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------------cHHHHHHH
Confidence 24344444444433 0011223345568899999999999999999998877421 13455667
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
+.++...|++.+|...+.++...... ++ ......+.++...+++.+|...|-.+...+
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQ--NA----RSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC--cH----HHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 78899999999999999888653221 12 223345677778899999999988886644
No 41
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.58 E-value=4e-05 Score=74.15 Aligned_cols=213 Identities=8% Similarity=-0.041 Sum_probs=146.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCcc-chhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHhc
Q 014255 28 VETDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVS 105 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~-~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~-k~~~~k~v~~il~~~~ 105 (428)
..+++++|++.+.+.+...+.. ......++..++.++...|+++++.+++.+.+... +..+ ......+...+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-RQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHH
Confidence 3578999999999998876533 23356788899999999999999999999999886 4322 2222222333333332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhhh--hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHH
Q 014255 106 GSASQNFSLLREFYQTTLKALEEAKNE--RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (428)
Q Consensus 106 ~~~~~~~~~~~~~~~~~le~l~~~~~~--kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (428)
... +.+.....++.+++........ .........+|.++...|++++|...+.+......... + .....
T Consensus 105 ~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~----~~~~~ 175 (373)
T 1hz4_A 105 AQG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---P----QQQLQ 175 (373)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---G----GGGHH
T ss_pred HCC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---c----HHHHH
Confidence 212 3556677777777654432221 22334556899999999999999999999988865431 2 12346
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh-hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 184 ~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p-~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
.+...+.++...|++.+|..+++++..+......+ ..........+.++...|++..|...+-++..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 67777899999999999999999997765443332 22222222344557789999999998887754
No 42
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.57 E-value=1.1e-05 Score=66.95 Aligned_cols=156 Identities=15% Similarity=0.014 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh
Q 014255 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (428)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~ 130 (428)
.....++..++.++...|+++++.+++.+.+... +.. ++ .
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~-------------------~~--~------------------ 45 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEF-------------------GD--K------------------ 45 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHH-------------------TC--H------------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHh-------------------CC--c------------------
Confidence 4457788899999999999999999999888876 321 11 0
Q ss_pred hhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 131 ~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
.....+...+|.++...|++++|.+.+.+........+. . ......+...+.++...|++.+|..++.++..
T Consensus 46 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 46 --AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--R----AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--c----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 000112345666677777777777666666655444321 1 23445555666677777777777777777766
Q ss_pred hhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 211 ~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
......++...+......|.++...+++.+|..+|.++...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 118 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 65555555555555555666777777777777777776655443
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.56 E-value=3e-05 Score=68.39 Aligned_cols=190 Identities=13% Similarity=0.057 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|+++++..++. ..++..++.+|...|+++++.+++.+.+... +... .....+...+...+
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-----~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSA-----EINNNYGWFLCGRL 90 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCh-----HHHHHHHHHHHHhc
Confidence 467999999999999887654 4577889999999999999999999998865 4321 22333344443320
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+ +.+.....++.+++ .............+|.++...|++++|.+.+.+....... ....+...
T Consensus 91 ~-~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l 153 (225)
T 2vq2_A 91 N-RPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------------FPPAFKEL 153 (225)
T ss_dssp C-CHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHH
T ss_pred C-cHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CchHHHHH
Confidence 1 24445555555443 1111112234557888899999999999888888776321 13455566
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+.++...|++.+|...++++...... .++. .....+.++...+++..|..++-....
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEV-LQAD----DLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCS-CCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CCHH----HHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77888899999999998888665420 1111 223445666677788777666655543
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.55 E-value=3.6e-06 Score=75.69 Aligned_cols=198 Identities=10% Similarity=-0.005 Sum_probs=129.4
Q ss_pred HHHHHhhcccC-CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 014255 18 VLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (428)
Q Consensus 18 ~~~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (428)
...+..|.... .+++++|++.|.++++..+++ ..++..++.++...|+++++++++.+.+... +.. ...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~ 93 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKALELD-SSA-----ATA 93 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccc-----hHH
Confidence 33344444443 457999999999999877654 5678889999999999999999999998875 432 122
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchh
Q 014255 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK 176 (428)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~ 176 (428)
...+...+.... +.+.....++.+++. ..+. ..+...+|.++...|++++|.+.+.+....... +
T Consensus 94 ~~~la~~~~~~~--~~~~A~~~~~~~~~~---~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-- 158 (243)
T 2q7f_A 94 YYGAGNVYVVKE--MYKEAKDMFEKALRA---GMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-----D-- 158 (243)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHH---TCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-----C--
T ss_pred HHHHHHHHHHhc--cHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-----c--
Confidence 233333333212 244555666555442 1111 134557899999999999999999998877431 1
Q ss_pred hhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 177 KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 177 ~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
...+...+.++...|++.+|...+.++...... + ...+...|.++...|++.+|...|-++...
T Consensus 159 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 159 -----TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--H----ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp -----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--c----HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 345666778899999999999999988655321 1 224455678888999999999999998764
No 45
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.54 E-value=9.7e-06 Score=76.96 Aligned_cols=196 Identities=9% Similarity=0.087 Sum_probs=137.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|.++++..+++ ..++..++.++...|+++++.+.+...+... +... .....+...+....
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWD----AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNT-----EAFYKISTLYYQLG 202 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCH-----HHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHcC
Confidence 467999999999999887654 4678889999999999999999999998865 4322 22223333322211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHH--------HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhh
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWF--------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~l--------r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~ 180 (428)
+.+.....++.+++.-. .+...+. .....+|.++...|++++|.+.+++.....+. + ...
T Consensus 203 --~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~---~~~ 270 (359)
T 3ieg_A 203 --DHELSLSEVRECLKLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----V---AEY 270 (359)
T ss_dssp --CHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----S---HHH
T ss_pred --CHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----c---hHH
Confidence 24445555555544211 1111111 22446799999999999999999999887542 2 234
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 181 ~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
....+...+.++...|++.+|...+.++....+. ++ ..+...|.++...|+|.+|..+|-.+.+..
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD--NV----NALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5566777889999999999999999998765211 12 244556888899999999999999997643
No 46
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=2.3e-05 Score=68.42 Aligned_cols=182 Identities=9% Similarity=0.031 Sum_probs=129.2
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHH
Q 014255 65 YRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144 (428)
Q Consensus 65 ~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~ 144 (428)
+..|+++++.++++.+... + .....+...+...+.... +.+.....++.+++..+..++......+...+|.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH--P----ATASGARFMLGYVYAFMD--RFDEARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHHHTS--T----TTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC--h----HHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5678999998855544321 1 122333333433333222 3666777888887766654444455577789999
Q ss_pred HHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHH
Q 014255 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (428)
Q Consensus 145 l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i 224 (428)
++...|++++|.+.+.+........+ ++ .......+...+.++...|++.+|..++.++..+.....++...+..
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~--~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLP--ED---PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSC--CC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcC--cc---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999999999888765321 12 12456677788899999999999999999998777666677666766
Q ss_pred HHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchh
Q 014255 225 RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 259 (428)
Q Consensus 225 ~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~ 259 (428)
....|.++...|+|.+|..+|.++...+...+++.
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 77779999999999999999999998887777653
No 47
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.54 E-value=5.4e-06 Score=79.62 Aligned_cols=194 Identities=12% Similarity=0.151 Sum_probs=134.3
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHH-------------
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK------------- 95 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k------------- 95 (428)
.+++++|++.|.+.++..+++ ..++..++.+|...|+++++++.+.+.+... +.........
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDN----QTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------
T ss_pred CcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHH
Confidence 467999999999999887654 5678899999999999999999999999875 4322222100
Q ss_pred -HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcc
Q 014255 96 -CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD 174 (428)
Q Consensus 96 -~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d 174 (428)
.+..+. .. . +.+.....++.+++ ..++. ....+...+|.++...|++++|.+.+++.....+. +
T Consensus 186 ~~~~~~~-~~---~--~~~~A~~~~~~a~~---~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~ 250 (368)
T 1fch_A 186 RILGSLL-SD---S--LFLEVKELFLAAVR---LDPTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-----D 250 (368)
T ss_dssp CTTHHHH-HH---H--HHHHHHHHHHHHHH---HSTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C
T ss_pred HHHHHHh-hc---c--cHHHHHHHHHHHHH---hCcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----C
Confidence 011111 00 0 12223333333332 11110 02244568999999999999999999998877321 1
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 175 QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 175 ~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
...+...+.++...|++.+|...+.++...... + ...+...|.++...|+|.+|..+|-.+......
T Consensus 251 -------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 251 -------YLLWNKLGATLANGNQSEEAVAAYRRALELQPG--Y----IRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 346667778899999999999999999765321 1 223455588899999999999999999877665
Q ss_pred h
Q 014255 255 A 255 (428)
Q Consensus 255 ~ 255 (428)
.
T Consensus 318 ~ 318 (368)
T 1fch_A 318 S 318 (368)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.52 E-value=1.2e-05 Score=77.38 Aligned_cols=197 Identities=7% Similarity=-0.027 Sum_probs=109.9
Q ss_pred HHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh---------------hhHHHHHH
Q 014255 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---------------RNYSEKCI 97 (428)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~---------------k~~~~k~v 97 (428)
..++..+.+.....+++.......+..++..+.+.|+++++.++|++.+... +... -....+.+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 122 (365)
T 4eqf_A 44 QVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVAL 122 (365)
T ss_dssp ---------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455556666555544332234567888999999999999999999998865 4321 11122222
Q ss_pred HHHHHHhcCCCC---------------CChhHHHHHHHHHHHHHHHhhhhhHH------HHHhHHHHHHHHhhccHHHHH
Q 014255 98 NNIMDFVSGSAS---------------QNFSLLREFYQTTLKALEEAKNERLW------FKTNLKLCKIWFDMGEYGRMS 156 (428)
Q Consensus 98 ~~il~~~~~~~~---------------~~~~~~~~~~~~~le~l~~~~~~kl~------lr~~~~La~l~~~~g~~~~A~ 156 (428)
+.++.. .|+ .+.+.....++.+++.- . .+...+ ..+...++.++...|++++|.
T Consensus 123 ~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 123 QRCLEL---QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN-P-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-H-HHHCC-------------------CCHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-c-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHH
Confidence 222222 122 01111222222222110 0 000111 112235688999999999999
Q ss_pred HHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhh
Q 014255 157 KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAER 236 (428)
Q Consensus 157 ~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~ 236 (428)
+++++.....+.. .....+...+.++...|++.+|...+.++...... + ...+...|.++...|
T Consensus 198 ~~~~~al~~~p~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 198 ELYLEAAHQNGDM----------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE--D----YSLWNRLGATLANGD 261 (365)
T ss_dssp HHHHHHHHHSCSS----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcCc----------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcC
Confidence 9999998884321 12345666778999999999999999998765321 1 224455688888999
Q ss_pred cHHHHHHHHHHHHHh
Q 014255 237 QWADAATDFFEAFKN 251 (428)
Q Consensus 237 ~y~~A~~~f~ea~~~ 251 (428)
+|.+|...|-.+...
T Consensus 262 ~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 262 RSEEAVEAYTRALEI 276 (365)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998764
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.51 E-value=6e-06 Score=75.78 Aligned_cols=122 Identities=11% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|.++++.+|++ ..++..++.+|...|+++++++++.+.+. . +. ...........+...+....
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~-~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNS----PYIYNRRAVCYYELAKYDLAQKDIETYFS-K-VN-ATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCC----STTHHHHHHHHHHTTCHHHHHHHHHHHHT-T-SC-TTTCCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-c-cC-chhHHHHHHHHHHHHHHHcc
Confidence 456777777777777776543 23556677777777777777777777776 2 32 22222333333333333212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
+.+...+.++.+++. ..+. ..+...+|.+|...|++++|.+.+++....
T Consensus 89 --~~~~A~~~~~~a~~~---~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 89 --QDSLAIQQYQAAVDR---DTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp --CHHHHHHHHHHHHHH---STTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred --cHHHHHHHHHHHHhc---Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 244455555555442 1110 122345666666666666666666555444
No 50
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.47 E-value=1.5e-05 Score=75.67 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=133.5
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|.++++.+|++ ..++..++.++...|+++++.+.+.+.+... +... .....+...+....
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFT-----AARLQRGHLLLKQG 85 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcc-----hHHHHHHHHHHHcC
Confidence 468999999999999987754 4678899999999999999999999999875 4322 22222322222211
Q ss_pred CCChhHHHHHHHHHHHHHHHh-hhhhHHH--------HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhh
Q 014255 109 SQNFSLLREFYQTTLKALEEA-KNERLWF--------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~-~~~kl~l--------r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~ 179 (428)
+.+.....++.+++.-... .+...+. +....+|.++...|++++|.+.+.++....+.
T Consensus 86 --~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------- 152 (359)
T 3ieg_A 86 --KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW----------- 152 (359)
T ss_dssp --CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred --ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----------
Confidence 1333444444443310000 0111111 22346689999999999999999999887431
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 180 ~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
..+.+...+.++...|++.+|...+.++...... ++ ..+...|.++...++|..|...|-.+....
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 153 -DAELRELRAECFIKEGEPRKAISDLKAASKLKSD--NT----EAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1356677788999999999999999988754211 12 234455788889999999999999987654
No 51
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.46 E-value=1.7e-05 Score=74.52 Aligned_cols=189 Identities=12% Similarity=0.073 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (428)
+++++|++.|+++++.++.+ ..++..++.++...|+++++.+++.+.+... +.... ....+...+....
T Consensus 36 g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~l~~~~~~~~- 104 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDPFH----ASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPV-----SWFAVGCYYLMVG- 104 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTH-----HHHHHHHHHHHSC-
T ss_pred CCHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHH-----HHHHHHHHHHHhh-
Confidence 68999999999999887654 3455667788899999999999999998865 43222 2222222222212
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHH
Q 014255 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~ 189 (428)
...+.....++.+++. ..+ .......+|.++...|++++|.+.+.+.....+.. ...+...+
T Consensus 105 ~~~~~A~~~~~~a~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~l~ 166 (330)
T 3hym_B 105 HKNEHARRYLSKATTL---EKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC------------HLPMLYIG 166 (330)
T ss_dssp SCHHHHHHHHHHHHTT---CTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC------------SHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh---CCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc------------HHHHHHHH
Confidence 1244555666655442 111 11234477888888888888888888887764321 12233456
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
.++...|++.+|...+.++...... + .......|.++...++|.+|...|-++.....
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPE--D----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 7778888888888888877654221 1 22334457777788888888888888877654
No 52
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.45 E-value=4e-06 Score=76.74 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=121.2
Q ss_pred HHhhcCHHHHHHHHHHHHh---hhccCCC---h-h--hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh--hcchhH
Q 014255 192 YTETKNNKKLKQLYQKALA---IKSAIPH---P-R--IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE--AGNQRR 260 (428)
Q Consensus 192 ~~~~~d~~ka~~~l~~a~~---~~~~i~~---p-~--~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~--~~~~~~ 260 (428)
.+..+|+.+|...+.+.+. ..+..++ + . +--.+++.++++.+..+|..+=-+++..-..-|.. .+++..
T Consensus 17 ~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~~ 96 (229)
T 4b0z_A 17 LYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSRM 96 (229)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTTH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCccH
Confidence 4567899999999887642 1222211 1 1 12366778888877776655433333333333333 234566
Q ss_pred HHHHHHHHHHHHhhCCCCC--CCCcccccc--cCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHH
Q 014255 261 IQCLKYLVLANMLMESEVN--PFDGQEAKP--YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIED 336 (428)
Q Consensus 261 ~~~l~y~~L~~lL~~~~~~--~~~~~~~~~--~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~ 336 (428)
..+..|-+|..++.++..+ .+-...... ..++|.+.....|.+++..|++..|.+...+.. .|...-.++.
T Consensus 97 ~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p-----~~~~~~~~~~ 171 (229)
T 4b0z_A 97 GLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCN-----FPEFSYFMKI 171 (229)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----CGGGHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCc-----cchHHHHHHH
Confidence 7788888888776554211 111110000 123566777778999999999999998877632 2333445678
Q ss_pred HHHHHHHHHHHHhhccccccchhhHHhHhCC-ChHHHHHHHHH
Q 014255 337 LLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEKDVEQLLVS 378 (428)
Q Consensus 337 l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l-~~~~vE~~l~~ 378 (428)
+..++|..++..+.+.|++|+++++++.|++ ++++++..+.+
T Consensus 172 l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 172 VMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999 47889988887
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.44 E-value=1.1e-05 Score=74.03 Aligned_cols=171 Identities=10% Similarity=0.050 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhH
Q 014255 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (428)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl 134 (428)
..+...+.+++..|+++++++++++.+... +.... ....+...+.... +.+...+.++.+++ ...+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~-----~~~~l~~~~~~~~--~~~~A~~~~~~a~~---~~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPY-----IYNRRAVCYYELA--KYDLAQKDIETYFS---KVNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCST-----THHHHHHHHHHTT--CHHHHHHHHHHHHT---TSCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHH-----HHHHHHHHHHHHh--hHHHHHHHHHHHHh---ccCchhH
Confidence 356678999999999999999999999875 44222 1222222222212 25566677777655 1223334
Q ss_pred HHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014255 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 135 ~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (428)
.......+|.++...|++++|.+.+.+.....+. ..+.+...+.++...|++.+|...++++...
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--- 137 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--- 137 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence 3455679999999999999999999999887432 1246667788999999999999999888654
Q ss_pred CCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 215 i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
+|.. ...+...|......++|.+|...|-++.+..+.
T Consensus 138 --~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 138 --TTTD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp --SCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred --CCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2211 122333352233355999999999999876543
No 54
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.44 E-value=2.3e-05 Score=70.76 Aligned_cols=171 Identities=7% Similarity=0.074 Sum_probs=110.2
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh-------
Q 014255 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN------- 91 (428)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~------- 91 (428)
.|..|..+ ..+++++|++.|+++++..|+. .+...++..++.+|.+.|+++++++.|++++... |.-...
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHH
Confidence 33334333 3468999999999999887643 3346889999999999999999999999999876 542221
Q ss_pred --------------------------HHHHHHHHHHHHhcCCCCCCh-hHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHH
Q 014255 92 --------------------------YSEKCINNIMDFVSGSASQNF-SLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144 (428)
Q Consensus 92 --------------------------~~~k~v~~il~~~~~~~~~~~-~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~ 144 (428)
...+.+...-..+...|+... ......+..+.. ........+|.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~---------~~~~~~~~~a~ 155 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD---------RLAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 111111111112221222100 000000000000 00122357899
Q ss_pred HHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 145 l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
+|+..|+|.+|...++++....++. ...-+.+...+.++..+|++.+|...+..+..
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDT---------QATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTS---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCC---------CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 9999999999999999998886431 23346777788899999999999999887654
No 55
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.44 E-value=6.4e-05 Score=70.40 Aligned_cols=60 Identities=13% Similarity=-0.056 Sum_probs=47.4
Q ss_pred HHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 21 ~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
+..|... ..+++++|++.|+++++.++++ ..++..++.++...|+++++.+++.+.+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLD 85 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3344433 3457999999999999887653 4667788999999999999999999988875
No 56
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.42 E-value=8.9e-05 Score=73.20 Aligned_cols=204 Identities=10% Similarity=0.036 Sum_probs=134.6
Q ss_pred CCCHHHHHHHHHHhhcCCCccch--hhHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAE--WGFK---------ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~--~~~k---------~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (428)
.+++++|++.|+++++..+++.. .... ....++..+...|+++++++++...+... +... ...
T Consensus 107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~ 180 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA-----ELR 180 (450)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH-----HHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-----HHH
Confidence 45789999999999988775320 1111 23344778999999999999999998865 4321 223
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhh
Q 014255 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (428)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~ 177 (428)
..+...+....+ .+.....++.+++. ..+ .......+|.+|...|++++|.+.+++.....+.. .....
T Consensus 181 ~~l~~~~~~~g~--~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~ 249 (450)
T 2y4t_A 181 ELRAECFIKEGE--PRKAISDLKAASKL---KND---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFA 249 (450)
T ss_dssp HHHHHHHHHTTC--GGGGHHHHHHHHHH---HCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHH
Confidence 334443333222 44455666655442 111 12345588999999999999999999998764321 01000
Q ss_pred ---hhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 178 ---GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 178 ---~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
....++.....+..+...|++.+|...+.++...... +|......+.+.|.++...|+|.+|...|-++...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0001122244478899999999999999998765322 45555566777788999999999999999888653
No 57
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.42 E-value=3.8e-05 Score=71.96 Aligned_cols=194 Identities=10% Similarity=0.036 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH--------
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-------- 100 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i-------- 100 (428)
.+++++|++.|.++++..++. ..++..++.+|...|+++++.+.+.+.+... +......... ...+
T Consensus 68 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 141 (327)
T 3cv0_A 68 NEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVN-LQADVDIDDLNV 141 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC-----------------
T ss_pred cCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHH-hHHHHHHHHHHH
Confidence 467999999999999887654 5678889999999999999999999998865 4322111110 0000
Q ss_pred H-HH--hcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhh
Q 014255 101 M-DF--VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (428)
Q Consensus 101 l-~~--~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~ 177 (428)
+ .. +.. ..+.+.....++.+++ ...+ ...+...+|.++...|++++|.+.+.+.....+. +
T Consensus 142 ~~~~~~~~~--~~~~~~A~~~~~~~~~---~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~--- 205 (327)
T 3cv0_A 142 QSEDFFFAA--PNEYRECRTLLHAALE---MNPN---DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-----D--- 205 (327)
T ss_dssp ----CCTTS--HHHHHHHHHHHHHHHH---HSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C---
T ss_pred HHHhHHHHH--cccHHHHHHHHHHHHh---hCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----c---
Confidence 0 10 100 0011222223333222 1111 1234568899999999999999999998877431 1
Q ss_pred hhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 178 ~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
...+...+.++...|++.+|...+.++...... ++ ..+...|.++...|+|.+|...|-.+......
T Consensus 206 ----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 206 ----AQLWNKLGATLANGNRPQEALDAYNRALDINPG--YV----RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 345667778899999999999999998765321 12 23344588888999999999999999876665
No 58
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.41 E-value=3.7e-05 Score=75.98 Aligned_cols=194 Identities=9% Similarity=0.092 Sum_probs=137.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|.+.++..+.+ ..++..++.+|...|+++++++.+...+... +... .....+...+....
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVWD----AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNT-----EAFYKISTLYYQLG 225 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCH-----HHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHcC
Confidence 467999999999999877643 4678889999999999999999999998875 4321 23333344333322
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhh-HHH--------HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhh
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNER-LWF--------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~k-l~l--------r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~ 179 (428)
+.+.....++.+++. ..+.. .+. .....+|..+...|++++|.+.+.+.....+. + ..
T Consensus 226 --~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~---~~ 292 (450)
T 2y4t_A 226 --DHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----I---AE 292 (450)
T ss_dssp --CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-----S---HH
T ss_pred --CHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----c---hH
Confidence 244555666655432 11111 111 11245699999999999999999999886432 2 13
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 180 ~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
...+.+...+.++...|++.+|...+.++.... |. ....+...|.++...++|.+|...|-.+.+.
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-----PD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 446778888899999999999999999987652 11 1234445578888999999999999999764
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.41 E-value=3.2e-05 Score=66.82 Aligned_cols=167 Identities=12% Similarity=0.025 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
+..++.++|.+|...|+++++++.|++.++.. |.... ....+...+....+ .+.....+..+... ..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~-----~~~~la~~~~~~~~--~~~a~~~~~~~~~~---~~~- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVE-----TLLKLGKTYMDIGL--PNDAIESLKKFVVL---DTT- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHTTC--HHHHHHHHHHHHHH---CCC-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHCCC--HHHHHHHHHHHHhc---Cch-
Confidence 46678899999999999999999999999875 54322 23333333332122 33344444443321 111
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.......+|.++...++++.|.+.+.+.....+. ..+.+...+.++...|++.+|...++++..+.
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 72 --SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 1133457889999999999999999998877431 13456667789999999999999999987663
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+ . ....+...|.++...|+|.+|..+|-++.+.
T Consensus 138 p-----~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 P-----G-FIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp T-----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred c-----h-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 2 1 1234455688999999999999999999764
No 60
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.41 E-value=3.2e-05 Score=64.03 Aligned_cols=132 Identities=9% Similarity=-0.017 Sum_probs=104.1
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+...+|.++...|++++|.+.+.+.......... . ......+...+.++...|++.+|..++.++....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--K----AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--c----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344456779999999999999999999888876655422 2 3467788888999999999999999999999888
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcch-hHHHHHHHHHHH
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RRIQCLKYLVLA 270 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~-~~~~~l~y~~L~ 270 (428)
....++...+......|.++...++|.+|..+|.++.......+++ ....+...+..+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 80 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 8888888777777788999999999999999999998877655443 223333344443
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.34 E-value=2.4e-05 Score=71.52 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=127.4
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh--hhhhHHHHHhH
Q 014255 65 YRLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNL 140 (428)
Q Consensus 65 ~~~~~~~~l~e~~~~l~~~~~~~~--~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~--~~~kl~lr~~~ 140 (428)
...|+++++.++|++.+...+... .......+...+...+.... +.+.....++.+++..+.. .+......+..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 346788888888888888773322 22344555555655554422 3566777777777765443 23344557778
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC--Ch
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--HP 218 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~--~p 218 (428)
.+|.++...|++++|.+.+.+.........+.++ ......+...+.++...|++.+|..++.++..+..... ++
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH----PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999988877533211112 34567788888999999999999999999977643322 22
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
..........|.++...|+|.+|...|-++.....
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 23344555668899999999999999999987544
No 62
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.32 E-value=0.0002 Score=69.22 Aligned_cols=197 Identities=7% Similarity=-0.083 Sum_probs=133.8
Q ss_pred chhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh
Q 014255 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (428)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~ 129 (428)
..+...+....+.++...|+++++.+++...+... +.........+...+...+.... +.+.....++.+++.....
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~ 86 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQH 86 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhc
Confidence 44456677778899999999999999999988875 43222222223333333332212 2555667777776654443
Q ss_pred hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 130 ~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
++..........+|.++...|++++|...+.+.........+... ......+...+.++...|++.+|..++.++.
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL----PMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333233355678999999999999999999998887643322111 2234555667788999999999999999998
Q ss_pred hhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 210 ~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
.......++. ........|.++...|++.+|...|-++......
T Consensus 163 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 163 EVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 7765544443 3344556688999999999999999998765433
No 63
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=4.4e-05 Score=75.24 Aligned_cols=191 Identities=13% Similarity=0.010 Sum_probs=139.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhh------------hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHH
Q 014255 61 VKLYYRLGKYKEMMDAYREMLTYIKSAV------------TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (428)
Q Consensus 61 ~~l~~~~~~~~~l~e~~~~l~~~~~~~~------------~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~ 128 (428)
++-+.+.|+++++++.|..+++.. +.. .....++++.++...+....+ .+...+.+..+++....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--KDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHTHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH
Confidence 556788899999999999998865 321 233455677788887765333 66677778777776554
Q ss_pred hhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014255 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (428)
Q Consensus 129 ~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a 208 (428)
.++.+.-..+...++.++...|++++|.+++.+......... + ......++...+.+|...|++.+|...+..+
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK---R---VFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS---C---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC---c---cHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 333333324445678888889999999999988887765421 1 1344667777889999999999999999998
Q ss_pred HhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhH
Q 014255 209 LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 260 (428)
Q Consensus 209 ~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~ 260 (428)
........+......+....|.++...+||..|...+-.+.........+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 7766666555556677788899999999999999999998766555444433
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.32 E-value=0.0001 Score=66.05 Aligned_cols=126 Identities=15% Similarity=0.108 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHhhcCCC-ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 29 ETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~-~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
.+++++|++.|.++++.++ .+ ..++..++.++...|+++++++++.+.+...
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------- 72 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQD----SVTAYNCGVCADNIKKYKEAADYFDIAIKKN----------------------- 72 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------------
T ss_pred ccCHHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----------------------
Confidence 3567888888888777664 32 2455557778888888888877776665432
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (428)
|+ .......+|.+|...|++++|.+.+++.....++ +..-...+.+++..
T Consensus 73 p~-------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~ 122 (228)
T 4i17_A 73 YN-------------------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-----NATIEKLYAIYYLK 122 (228)
T ss_dssp CS-------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHH
T ss_pred cc-------------------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHH
Confidence 22 0122457899999999999999999999887542 11011334577888
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 188 EIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 188 e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
...++...|++.+|...+.++...
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HhHHHHHhccHHHHHHHHHHHHhc
Confidence 889999999999999999998654
No 65
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.32 E-value=5.2e-05 Score=76.67 Aligned_cols=193 Identities=10% Similarity=0.089 Sum_probs=116.9
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (428)
+++++|++.|.++++..++. ..++..++.++...|+++++.+.+.+.+... +.... ....+...+....
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~-----~~~~la~~~~~~g- 358 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEY----PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVY-----PYIQLACLLYKQG- 358 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSH-----HHHHHHHHHHHTT-
T ss_pred cCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHcC-
Confidence 34556666666665554432 3445566666677777777777766666654 32211 1222222222211
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHH
Q 014255 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (428)
Q Consensus 110 ~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~ 189 (428)
+.+.....++.+++. ..+. ..+...+|.++...|++++|.+.+.+........+. ....+..+...+
T Consensus 359 -~~~~A~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~a 425 (537)
T 3fp2_A 359 -KFTESEAFFNETKLK---FPTL---PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK------IHVGIGPLIGKA 425 (537)
T ss_dssp -CHHHHHHHHHHHHHH---CTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS------CSSTTHHHHHHH
T ss_pred -CHHHHHHHHHHHHHh---CCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh------hHHHHHHHHHHH
Confidence 233344444444332 1111 123457899999999999999999998877543211 122334445566
Q ss_pred HHHHhh----------cCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 190 QMYTET----------KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 190 ~l~~~~----------~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
.++... |++.+|...++++...... ++ ..+...|.++...|+|.+|...|-.+....
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR--SE----QAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 777777 9999999999998765321 12 344556888899999999999999997754
No 66
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=6.3e-05 Score=73.10 Aligned_cols=187 Identities=12% Similarity=0.140 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|.+.++.+|+. ..+...++.++...|+++++.+.|.+.+... +... .....+...+....
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~-----~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDL----YCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFA-----VAWSNLGCVFNAQG 183 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTC----THHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHcC
Confidence 456788888888888776643 3456677888888888888888888877754 3321 12222333333211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+.....++.+++. .. -.......+|.++...|++++|...+.+.....++ ....+...
T Consensus 184 --~~~~A~~~~~~al~~-~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l 243 (388)
T 1w3b_A 184 --EIWLAIHHFEKAVTL-DP-----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN------------HAVVHGNL 243 (388)
T ss_dssp --CHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred --CHHHHHHHHHHHHhc-CC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------------CHHHHHHH
Confidence 244455555555442 11 01123346666666777777776666666555211 12334444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+.++...|++.+|...++++...... +|. .+..-|.++...|++.+|...|-++...
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPH--FPD----AYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSS--CHH----HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56666667777776666666543211 111 2233355566666666666666666543
No 67
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.31 E-value=3.6e-05 Score=79.14 Aligned_cols=103 Identities=9% Similarity=0.050 Sum_probs=78.0
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
+...++.++...|++++|.+++++......+.+ .++ ......+...+.+|...|++.+|...++++...... +
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~p---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~ 549 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ--SNE---KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN--D 549 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCS---GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC--C
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc--cch---hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--C
Confidence 355889999999999999999999887643211 111 223577788889999999999999999998765311 1
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+ ..+...|.++...|+|.+|...|-++.+.
T Consensus 550 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 550 A----NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2 34455577888999999999999998764
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.31 E-value=6.4e-05 Score=63.86 Aligned_cols=154 Identities=11% Similarity=0.047 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|+++++..+++ ..++..++.++...|+++++.+++...+... |
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~ 73 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFD----VDVALHLGIAYVKTGAVDRGTELLERSLADA-----------------------P 73 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred hcCHHHHHHHHHHHHHhCccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------C
Confidence 457899999999988776543 4677888999999999999998887776642 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+ +. .+...+|.++...|++++|.+.+.+.....+. + ...+...
T Consensus 74 ~-~~------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~ 116 (186)
T 3as5_A 74 D-NV------------------------KVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-----N-------FNVRFRL 116 (186)
T ss_dssp T-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHH
T ss_pred C-CH------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-----h-------HHHHHHH
Confidence 2 00 11236788888899999999999888877421 1 2455666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
+.++...|++.+|...+.++...... + .......|.++...|+|.+|...|-.+....
T Consensus 117 a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFKIALGLRPN--E----GKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHhcCcc--c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 78888999999999999888654311 1 2234455777888899999999988886543
No 69
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.30 E-value=5.1e-05 Score=78.00 Aligned_cols=189 Identities=10% Similarity=0.050 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|+++++.++++ ..++..++.+|.+.|+++++.+++..++... +.. ......+...+....
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-----~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYN----LDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK-----AVTWLAVGIYYLCVN 387 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS-----HHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc-----HHHHHHHHHHHHHhc
Confidence 567999999999999877643 3456778888999999999999999887653 321 223333444444322
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+...+.++.+++. . .+ .......++..|...|++++|.+++++....... + ...+...
T Consensus 388 --~~~~A~~~~~~~~~~-~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l 447 (597)
T 2xpi_A 388 --KISEARRYFSKSSTM-D--PQ---FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----T-------HLPYLFL 447 (597)
T ss_dssp --CHHHHHHHHHHHHHH-C--TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----C-------SHHHHHH
T ss_pred --cHHHHHHHHHHHHHh-C--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----c-------hHHHHHH
Confidence 255566666665542 1 11 1123447788888899999999888888766321 1 2344455
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
+..|...|++.+|...++++...... ++ ..+...|.++...|++.+|...|-++.....
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQY--DP----LLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 67788888999998888888654221 22 2345557778888889999999988877654
No 70
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.29 E-value=0.00013 Score=66.53 Aligned_cols=188 Identities=11% Similarity=0.062 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
+.++++|++.|.++++..+.+......++..++.+|...|+++++++++.+.+... +... .....+...+....
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMP-----EVFNYLGIYLTQAG 91 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCH-----HHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcH-----HHHHHHHHHHHHcc
Confidence 35699999999999987543334457899999999999999999999999999875 4322 22333333333222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+.....++.+++. .++. ......+|.++...|++++|.+.+.+.....++ + . .... .
T Consensus 92 --~~~~A~~~~~~al~~---~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~----~-~~~~---~ 150 (275)
T 1xnf_A 92 --NFDAAYEAFDSVLEL---DPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-----D----P-FRSL---W 150 (275)
T ss_dssp --CHHHHHHHHHHHHHH---CTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C----H-HHHH---H
T ss_pred --CHHHHHHHHHHHHhc---Cccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----C----h-HHHH---H
Confidence 255556666665542 1111 234568999999999999999999999887432 1 1 1111 1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
..++...|++.+|...+.++....+.. +... ..+.++...+++.+|...|.+++.
T Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 151 LYLAEQKLDEKQAKEVLKQHFEKSDKE--QWGW-----NIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSCCC--STHH-----HHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcc--hHHH-----HHHHHHHHhcCHHHHHHHHHHHhc
Confidence 123466799999999998775543221 1111 123344556666777777766654
No 71
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=5.3e-05 Score=73.65 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.+++++|+..+...++.+|.. ..++..++.+|...|+++++++.|++.+...
T Consensus 46 ~~~~~~a~~~~~~a~~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 97 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 456888888888888776643 5677888888888888888888888887764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.29 E-value=5.3e-05 Score=76.79 Aligned_cols=190 Identities=12% Similarity=0.077 Sum_probs=125.5
Q ss_pred CCCH-HHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 29 ETDP-EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 29 ~~~~-~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
.+++ ++|++.|++.++.+++. ..++..++.+|...|+++++.++|.+.+... +. ......+...+...
T Consensus 115 ~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~------~~~~~~lg~~~~~~ 183 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KN------KVSLQNLSMVLRQL 183 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CC------HHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC------HHHHHHHHHHHHHh
Confidence 4578 99999999999988754 5678899999999999999999999998864 32 24455555555432
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh-hhhHHHHHhHHHHHHHHhh--------ccHHHHHHHHHHHHhhccCCCCCcchhhh
Q 014255 108 ASQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDM--------GEYGRMSKILKELHKSCQREDGTDDQKKG 178 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~-~~kl~lr~~~~La~l~~~~--------g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (428)
...........++.+.+.++.+- -..-.......+|.+|... |++++|.+.+++....... .
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~ 254 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK---------A 254 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---------G
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---------c
Confidence 11112122223333333333220 0001113445889999988 9999999999999887321 0
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHH
Q 014255 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (428)
Q Consensus 179 ~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~ 244 (428)
....+.+...+.+|...|++.+|...+.++....... + ..+...|.++...+++.+|...
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~----~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW--P----EPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1235677778889999999999999999997664221 1 1223335566666677766653
No 73
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.25 E-value=4.4e-05 Score=77.18 Aligned_cols=192 Identities=8% Similarity=0.033 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|.+.++.+++ ..++..++.++...|+++++++++...+... +... .....+...+....
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-----PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP-----PTYYHRGQMYFILQ 324 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH-----HHHHHHHHHHHhcC
Confidence 45688999999999887654 4677788999999999999999999988875 4322 22333333333212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+.....++.+++. .++. ......+|.++...|++++|.+.+.+.....+. + .+.+...
T Consensus 325 --~~~~A~~~~~~a~~~---~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l 384 (537)
T 3fp2_A 325 --DYKNAKEDFQKAQSL---NPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-----L-------PEVPTFF 384 (537)
T ss_dssp --CHHHHHHHHHHHHHH---CTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------THHHHHH
T ss_pred --CHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-------hHHHHHH
Confidence 244555555555442 1111 133457899999999999999999998877432 1 2344555
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhh----------hcHHHHHHHHHHHHHh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE----------RQWADAATDFFEAFKN 251 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~----------~~y~~A~~~f~ea~~~ 251 (428)
+.++...|++.+|...+.++....................|.++... ++|.+|...|-.+...
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 78888999999999999998766544332211111122235555556 9999999999888764
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.25 E-value=1.9e-05 Score=84.47 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|++.++.+++. ..++.+++.+|.+.|+++++++.|++.+... |
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----------------------P 74 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----------------------P 74 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 356788888888887777654 4567777888888888888887777766643 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+ . ......||.+|.+.|++++|.+.+++....-. ...+.+...
T Consensus 75 ~--~-----------------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P------------~~~~a~~~L 117 (723)
T 4gyw_A 75 T--F-----------------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP------------AFADAHSNL 117 (723)
T ss_dssp T--C-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHH
T ss_pred C--C-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHHHHHH
Confidence 2 0 01234677888888888888888887776622 124556666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+.++...|++.+|...|++|.++.... + ..+..-|.++...++|.+|...|..+..
T Consensus 118 g~~~~~~g~~~eAi~~~~~Al~l~P~~--~----~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 118 ASIHKDSGNIPEAIASYRTALKLKPDF--P----DAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCC--H----HHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--h----HHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 777888888888888888877653221 1 1222335666677777777777776644
No 75
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.23 E-value=5.7e-05 Score=75.72 Aligned_cols=207 Identities=10% Similarity=0.060 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014255 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (428)
++++|++.|.++++..++. ..++..++.+|...|+++++++++...+... +... .....+...+....
T Consensus 285 ~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~-- 352 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNN----SSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENI-----FPYIQLACLAYREN-- 352 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTC----THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCS-----HHHHHHHHHTTTTT--
T ss_pred CHHHHHHHHHHHhhcCcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhH-----HHHHHHHHHHHHcC--
Confidence 3444444444444443322 2244455555666666666666665555543 2211 12222222222211
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHH
Q 014255 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~ 190 (428)
+.+.....++.+++. ..+ .......+|.++...|++++|.+.+.+........+ + .......+...+.
T Consensus 353 ~~~~A~~~~~~~~~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~---~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 353 KFDDCETLFSEAKRK---FPE---APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD---G---IYVGIAPLVGKAT 420 (514)
T ss_dssp CHHHHHHHHHHHHHH---STT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS---S---CSSCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH---ccc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc---h---HHHHHHHHHHHHH
Confidence 233344444444331 111 113445789999999999999999999887754321 1 0112346667778
Q ss_pred HHHh---hcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 014255 191 MYTE---TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYL 267 (428)
Q Consensus 191 l~~~---~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~ 267 (428)
++.. .|++.+|...+.++...... ++ ..+...|.++...|+|.+|...|-++..... .++.....+.+.
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~ 492 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPR--SE----QAKIGLAQMKLQQEDIDEAITLFEESADLAR--TMEEKLQAITFA 492 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SHHHHHHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcc--cH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc--ccHHHHHHHHHH
Confidence 8999 99999999999998765321 11 2344557888899999999999999976432 233444444444
Q ss_pred HH
Q 014255 268 VL 269 (428)
Q Consensus 268 ~L 269 (428)
-.
T Consensus 493 ~~ 494 (514)
T 2gw1_A 493 EA 494 (514)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 76
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=0.00055 Score=61.47 Aligned_cols=183 Identities=9% Similarity=0.096 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh-h
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-N 131 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~-~ 131 (428)
...++..++..+...|+++++++++.+.+... .. ......+...+.... +.+.....++.+++.-.... +
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~------~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~ 74 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD------ITYLNNRAAAEYEKG--EYETAISTLNDAVEQGREMRAD 74 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC------THHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc------HHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCcccccc
Confidence 46788999999999999999999999998863 11 123333333333222 25556666666665432211 1
Q ss_pred hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCC------c------c--hhhhhhHHHHHHHHHHHHHhhcC
Q 014255 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT------D------D--QKKGSQLLEVYAIEIQMYTETKN 197 (428)
Q Consensus 132 ~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~------~------d--~~~~~~~~e~~l~e~~l~~~~~d 197 (428)
......+...+|.++...|++++|.+.+.+.........-- + + ..........+...+.++...|+
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 11224667799999999999999999999988863210000 0 0 00001223455555666666666
Q ss_pred HHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 198 NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 198 ~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+.+|...+.++...... + ...+...|.++...++|.+|...|-.+..
T Consensus 155 ~~~A~~~~~~a~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE--D----ARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc--c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77666666666543211 1 12333345566666666666666666654
No 77
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.13 E-value=4.3e-05 Score=76.62 Aligned_cols=192 Identities=10% Similarity=0.087 Sum_probs=126.3
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|.++++..++ ..++..++.+|...|+++++++++...+... +.... ....+...+....
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS-----VYYHRGQMNFILQ 318 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH-----HHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH-----HHHHHHHHHHHhC
Confidence 45788999999998877654 5677888899999999999999988887764 33221 2222333322212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+ .+.....++.+++. ..+ . ......+|.++...|++++|.+.+.+.....+. + .+.+...
T Consensus 319 ~--~~~A~~~~~~~~~~---~~~-~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l 378 (514)
T 2gw1_A 319 N--YDQAGKDFDKAKEL---DPE-N--IFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-----A-------PEVPNFF 378 (514)
T ss_dssp C--TTHHHHHHHHHHHT---CSS-C--SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-----C-------SHHHHHH
T ss_pred C--HHHHHHHHHHHHHh---Chh-h--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----C-------HHHHHHH
Confidence 2 33455555554432 111 1 123457888888999999999998888776431 1 2345566
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHh---hhcHHHHHHHHHHHHHh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA---ERQWADAATDFFEAFKN 251 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~---~~~y~~A~~~f~ea~~~ 251 (428)
+.++...|++.+|...+.++................+...|.++.. .|+|.+|...|-.+...
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 7788889999999999988876554433221112244455777777 88999999888888653
No 78
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.09 E-value=0.00012 Score=65.13 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCccch-hh-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAE-WG-----------FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~-~~-----------~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k 95 (428)
..+++++|++.|.+.++.+|++.+ |. .+...+++.+|...|+++++++.|++.+...
T Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 84 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA----------- 84 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------
Confidence 356899999999999998875422 11 1122238999999999999999998887753
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcch
Q 014255 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (428)
Q Consensus 96 ~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~ 175 (428)
|+ +. .....+|.++...|++++|.+.++++...-++ +
T Consensus 85 ------------p~-~~------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-----~- 121 (208)
T 3urz_A 85 ------------PN-NV------------------------DCLEACAEMQVCRGQEKDALRMYEKILQLEAD-----N- 121 (208)
T ss_dssp ------------TT-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-
T ss_pred ------------CC-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C-
Confidence 33 00 12347899999999999999999999887331 1
Q ss_pred hhhhhHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 176 KKGSQLLEVYAIEIQMYTETKN--NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 176 ~~~~~~~e~~l~e~~l~~~~~d--~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
.+.+...+.+|...++ ...+...+.++. .++|...+ ....|..+...++|.+|..+|-++...++
T Consensus 122 ------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a--~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 122 ------LAANIFLGNYYYLTAEQEKKKLETDYKKLS-----SPTKMQYA--RYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHH--HHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred ------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----CCCchhHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 2344444555555443 333333333321 12332222 23358888889999999999999987553
No 79
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.05 E-value=0.00019 Score=64.18 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|+++++..+.. ..++..++.+|...|+++++.+++.+.+... +.... ....+...+....
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSA----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGD-----LFYMLGTVLVKLE 139 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHH-----HHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHHcCCcc----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHhc
Confidence 567999999999999887643 5678889999999999999999999998875 43221 2223333332212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+.....++.+++. ..+ .......+|.++...|++++|.+.+.+....... + ...+...
T Consensus 140 --~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l 199 (243)
T 2q7f_A 140 --QPKLALPYLQRAVEL---NEN---DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG-----H-------ADAFYNA 199 (243)
T ss_dssp --CHHHHHHHHHHHHHH---CTT---CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT-----C-------HHHHHHH
T ss_pred --cHHHHHHHHHHHHHh---CCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----c-------HHHHHHH
Confidence 244555555555442 111 1134568999999999999999999998877431 1 3456677
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
+.++...|++.+|..++.++...
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHcc
Confidence 88999999999999999998765
No 80
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.02 E-value=0.0017 Score=56.74 Aligned_cols=169 Identities=9% Similarity=-0.070 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++..++.++...|+++++++++...+... +... .....+...+.... +.+...+.++.+++. ..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~---~~~~ 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNE-----LAWLVRAEIYQYLK--VNDKAQESFRQALSI---KPDS 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHTT--CHHHHHHHHHHHHHH---CTTC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccch-----HHHHHHHHHHHHcC--ChHHHHHHHHHHHHh---CCCC
Confidence 46788899999999999999999999998875 4321 22333333333212 244555666665442 1111
Q ss_pred hHHHHHhHHHHHHHHhh-ccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 133 RLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~-g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
..+...+|.++... |++++|.+.+.+... ... + ......+...+.++...|++.+|...+.++...
T Consensus 76 ---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~-----~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 76 ---AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPT-----Y----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp ---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STT-----C----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcC-----C----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12345889999999 999999999999887 211 1 123456677788999999999999999988765
Q ss_pred hccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 212 ~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
... + .......|.++...++|.+|...|-.+...
T Consensus 143 ~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 143 QPQ--F----PPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp STT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCC--C----chHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 321 1 223344577888899999999999888664
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.01 E-value=0.00039 Score=63.68 Aligned_cols=142 Identities=8% Similarity=0.106 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR--------LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI 100 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~--------~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i 100 (428)
.+++++|++.|+++++..|++.. ...++..++.++.. .|+++++++.|++++... |.-..
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~---------- 132 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQIDPR-VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHEL---------- 132 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTT----------
T ss_pred hCcHHHHHHHHHHHHHHCCCCch-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchh----------
Confidence 46799999999999998775433 46889999999999 999999999999998876 43111
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhh
Q 014255 101 MDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (428)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~ 180 (428)
.......+..+... +....+.+|.+|...|+|++|...++++....++. ..
T Consensus 133 -----------~~~a~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~ 183 (261)
T 3qky_A 133 -----------VDDATQKIRELRAK---------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT---------PW 183 (261)
T ss_dssp -----------HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---------TT
T ss_pred -----------HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC---------ch
Confidence 00001111111111 11224689999999999999999999998875431 22
Q ss_pred HHHHHHHHHHHHHhh----------cCHHHHHHHHHHHHhh
Q 014255 181 LLEVYAIEIQMYTET----------KNNKKLKQLYQKALAI 211 (428)
Q Consensus 181 ~~e~~l~e~~l~~~~----------~d~~ka~~~l~~a~~~ 211 (428)
..+.+...+.+|..+ |++.+|...+.++...
T Consensus 184 ~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 184 ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 345666667777766 8889999999888654
No 82
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.95 E-value=0.00095 Score=62.82 Aligned_cols=194 Identities=12% Similarity=0.120 Sum_probs=119.9
Q ss_pred HHhhccc-CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 014255 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (428)
Q Consensus 21 ~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (428)
++.+++. ..+++++|+..++.. + .. ...++..++..+...|+++++++.++.++..- ..+.+...-. .
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~-----~-~~-~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~--~~P~~~~~~~--~ 106 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS-----S-AP-ELQAVRMFAEYLASHSRRDAIVAELDREMSRS--VDVTNTTFLL--M 106 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT-----S-CH-HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC--CCCSCHHHHH--H
T ss_pred HHHHHHHHHCCCHHHHHHHhccc-----C-Ch-hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc--cCCCCHHHHH--H
Confidence 3445543 455799999876542 1 12 36888889999999999999999999887641 0111111111 1
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhh
Q 014255 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (428)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~ 179 (428)
+...+.... +. +.+++.++.. -.......+|.++...|++++|.+.++++...-+ + .
T Consensus 107 la~~~~~~g--~~-------~~Al~~l~~~----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p------~----~ 163 (291)
T 3mkr_A 107 AASIYFYDQ--NP-------DAALRTLHQG----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDE------D----A 163 (291)
T ss_dssp HHHHHHHTT--CH-------HHHHHHHTTC----CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T----C
T ss_pred HHHHHHHCC--CH-------HHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc------C----c
Confidence 111121111 12 2233333321 1123455789999999999999999999988732 1 1
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 180 ~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
....+....+.++...|++.+|...++++..... .++ .++...|.++...|+|.+|...|.++....+.
T Consensus 164 ~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~~----~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PTL----LLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--CcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 1222222223445566889999999998865421 122 24444588888999999999999999876554
No 83
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.94 E-value=0.00032 Score=70.91 Aligned_cols=186 Identities=14% Similarity=0.063 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKY-KEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~-~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (428)
.++|++.+.+.....++ ...++..++.+|...|++ +++.++|++.++.. +... .....+...+....
T Consensus 84 ~~~al~~l~~~~~~~~~----~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~-----~a~~~lg~~~~~~g-- 151 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQV----EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELV-----EAWNQLGEVYWKKG-- 151 (474)
T ss_dssp HHHHHHHHHHHHTTCCC----CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhccCch----hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCH-----HHHHHHHHHHHHcC--
Confidence 56777777776555443 367889999999999999 99999999999875 5422 23333333333212
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhh---------ccHHHHHHHHHHHHhhccCCCCCcchhhhhhH
Q 014255 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM---------GEYGRMSKILKELHKSCQREDGTDDQKKGSQL 181 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~---------g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~ 181 (428)
+.+...+.++.+++. ..+ ......+|.++... |++++|.+.+++......+ +
T Consensus 152 ~~~~A~~~~~~al~~---~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~------- 212 (474)
T 4abn_A 152 DVTSAHTCFSGALTH---CKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-----D------- 212 (474)
T ss_dssp CHHHHHHHHHHHHTT---CCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-----C-------
T ss_pred CHHHHHHHHHHHHhh---CCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-----C-------
Confidence 244555666665442 122 25566899999999 9999999999999887432 1
Q ss_pred HHHHHHHHHHHHhh--------cCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 182 LEVYAIEIQMYTET--------KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 182 ~e~~l~e~~l~~~~--------~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
...+...+.++... |++.+|...++++..+... ..-....+...|.++...++|.+|...|-++...
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24455566777777 8999999999999876321 0123345556688999999999999999998764
No 84
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=0.002 Score=59.06 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (428)
+++++|++.|++.++.. + ..++..++.+|.. .|++++++++|++.+..- .......+...+.
T Consensus 20 ~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 20 KDFTQAKKYFEKACDLK--E----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLYY 85 (273)
T ss_dssp TCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHh
Confidence 48999999999998732 2 3678899999999 999999999999987752 1223333333332
Q ss_pred CC--CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHh----hccHHHHHHHHHHHHhhccCCCCCcchhhhh
Q 014255 106 GS--ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (428)
Q Consensus 106 ~~--~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~----~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~ 179 (428)
.. ...+.+.....++.+.+. . .......||.+|.. .|++++|.+++++....- +
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~----- 145 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-------D----- 145 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------C-----
T ss_pred CCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-------c-----
Confidence 20 012355566666665442 1 22445689999999 999999999999887751 1
Q ss_pred hHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHh----hhcHHHHHHHHHHHHHh
Q 014255 180 QLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFKN 251 (428)
Q Consensus 180 ~~~e~~l~e~~l~~~----~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~----~~~y~~A~~~f~ea~~~ 251 (428)
.+.+.....+|.. .+++.+|..+++++.... ++. .....|.++.. .++|.+|..+|..+.+.
T Consensus 146 --~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 146 --GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSP----GCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp --HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH----HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH----HHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 1234445567777 899999999999886542 222 22334677777 89999999999988653
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.93 E-value=0.0019 Score=57.83 Aligned_cols=188 Identities=10% Similarity=-0.049 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh
Q 014255 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (428)
Q Consensus 52 ~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~ 131 (428)
|...++.+++..+...|+++++++.++.++... |.- .......-.+...+.... +.+.....++..++. .++
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~--~~~~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~---~P~ 73 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFG--PYSQQVQLDLIYAYYKNA--DLPLAQAAIDRFIRL---NPT 73 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS--TTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH---CTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC--hHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH---CcC
Confidence 446678889999999999999999999999865 421 112233333333333212 244444555544331 111
Q ss_pred hhHHHHHhHHHH------------------HHHHhhccHHHHHHHHHHHHhhccCCCCCcchhh-----hhhHHHHHHHH
Q 014255 132 ERLWFKTNLKLC------------------KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK-----GSQLLEVYAIE 188 (428)
Q Consensus 132 ~kl~lr~~~~La------------------~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~-----~~~~~e~~l~e 188 (428)
....-.....+| ..+.+.|++++|...++++....++.+...+... ...+.+.....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV 153 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111011122333 4444578999999999999887654321111000 00011222455
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+.++...|++..|...++++.... ++...........|.++...|++.+|...|-....
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 678889999999999988876542 22122223445568888888999998887766544
No 86
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.93 E-value=0.00086 Score=60.39 Aligned_cols=168 Identities=13% Similarity=0.065 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++..++.++...|+++++.+++.+.+... +.. ......+...+.... +.+...+.++.+++. ..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~---~~~- 103 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSS-----ADAHAALAVVFQTEM--EPKLADEEYRKALAS---DSR- 103 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH---CTT-
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCh-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH---CcC-
Confidence 47888999999999999999999999998864 332 122333333333212 244555666655442 111
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
...+...+|.++...|++++|.+++.+... ... + ......+...+.++...|++.+|...+.++....
T Consensus 104 --~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~-----~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 104 --NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTL-----Y----PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTT-----C----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-Ccc-----C----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 123456889999999999999999999877 111 1 1234566777888999999999999999887653
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
.. + .......|.++...++|.+|...|-.+..
T Consensus 172 ~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 172 RN--Q----PSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp SC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cc--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 1 22344557788889999999999888765
No 87
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.92 E-value=0.00013 Score=74.33 Aligned_cols=139 Identities=11% Similarity=0.036 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHhhcCCC----ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (428)
.++++++|+..|+++++... ++-.++..++.+|+.+|..+|+|++|.+++++.+...+...
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l--------------- 385 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY--------------- 385 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS---------------
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc---------------
Confidence 46789999999999998543 33456899999999999999999999999999988762221
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHH
Q 014255 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (428)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (428)
. |+. . -......+||.+|...|+|++|..++++........-|.+. ....+
T Consensus 386 -G--~~H-p---------------------~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H----p~~~~ 436 (490)
T 3n71_A 386 -H--HNN-A---------------------QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH----PITKD 436 (490)
T ss_dssp -C--TTC-H---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS----HHHHH
T ss_pred -C--CCC-H---------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC----hHHHH
Confidence 1 221 1 01123459999999999999999999988876554444433 34455
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 184 VYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 184 ~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
......+.+..++.+..|...|..++.
T Consensus 437 ~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 437 LEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677788888888888888764
No 88
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.91 E-value=0.0014 Score=58.50 Aligned_cols=165 Identities=13% Similarity=0.160 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
..++..++.++.+.|++++++..|++.+..- |..... ...+...+.... +.+.....++.+++. .++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a-----~~~lg~~~~~~g--~~~~A~~~~~~al~~---~P~-- 71 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEA-----LYWLARTQLKLG--LVNPALENGKTLVAR---TPR-- 71 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHH-----HHHHHHHHHHTT--CHHHHHHHHHHHHHH---CTT--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH-----HHHHHHHHHHcC--CHHHHHHHHHHHHHh---CCC--
Confidence 4567889999999999999999999998865 543222 222222222212 244455555555442 111
Q ss_pred HHHHHhHHHHHHHHhh-----------ccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHH
Q 014255 134 LWFKTNLKLCKIWFDM-----------GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 202 (428)
Q Consensus 134 l~lr~~~~La~l~~~~-----------g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~ 202 (428)
.......+|.++... |++++|...+++....-++ ..+.+...+.++...|++.+|.
T Consensus 72 -~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------------~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 72 -YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------------YAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp -CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred -cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcCChHHHH
Confidence 123345889999999 9999999999999887321 2356667788999999999999
Q ss_pred HHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 203 QLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 203 ~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
..++++..+. .+|. .+...|.++...|+|.+|...|-.+...
T Consensus 139 ~~~~~al~~~---~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 139 ASLKQALALE---DTPE----IRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHC---CCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---cchH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998765 3333 3344588888999999999999998764
No 89
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=0.0013 Score=60.49 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (428)
..++++|++.|++.++.+ ...++..++.+|.. .+++++++++|++.+..- .......+...+
T Consensus 55 ~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~ 120 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGIY 120 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------CccHHHHHHHHH
Confidence 578999999999998774 25788899999999 999999999999887642 122333444444
Q ss_pred cCC--CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHh----hccHHHHHHHHHHHHhhccCCCCCcchhhh
Q 014255 105 SGS--ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (428)
Q Consensus 105 ~~~--~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~----~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (428)
... ...+.+...+.++.+.+. . .......+|.+|.. .+++++|.+.+++....- +
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~---- 181 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------D---- 181 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C----
T ss_pred HcCCCcccCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------C----
Confidence 320 012355566666665541 1 12345689999998 999999999999887651 1
Q ss_pred hhHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHh----hhcHHHHHHHHHHHHH
Q 014255 179 SQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (428)
Q Consensus 179 ~~~~e~~l~e~~l~~~----~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~----~~~y~~A~~~f~ea~~ 250 (428)
.+.+...+.+|.. .+++.+|..++.++.... ++. .....|.++.. .+++.+|..+|..+.+
T Consensus 182 ---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~----a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 182 ---SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGG----GCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp ---HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHH----HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHH----HHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 2344556678888 999999999999886542 221 22333667776 8999999999999865
No 90
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.90 E-value=0.00019 Score=71.38 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHhcCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS--EKCINNIMDFVSGS 107 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~--~k~v~~il~~~~~~ 107 (428)
+++++|++.|++.+..+++. ..++..++.+|...|+++++++.+.+.+... |....... +.+...........
T Consensus 227 ~~~~~a~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhH
Confidence 45678888888887776643 4567789999999999999999999998876 54322211 11111111111100
Q ss_pred C---CCChhHHHHHHHHHHHHHHHhhh-hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHH
Q 014255 108 A---SQNFSLLREFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (428)
Q Consensus 108 ~---~~~~~~~~~~~~~~le~l~~~~~-~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (428)
. ..........++.+.+.++.+.. ..........+|.+|...|++++|.+.+++....-.+ + ...-.
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~-----~----~~~~~ 372 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT-----P----VAKQL 372 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC-----H----HHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC-----C----hHHHH
Confidence 0 01122233444455444443211 1111234458999999999999999999988765321 1 11222
Q ss_pred HHHHHHHH-HHhhcCHHHHHHHHHHHHhhhccCCC-------------------hhhHHHHHHhhhHhHHhhhcHHHHHH
Q 014255 184 VYAIEIQM-YTETKNNKKLKQLYQKALAIKSAIPH-------------------PRIMGIIRECGGKMHMAERQWADAAT 243 (428)
Q Consensus 184 ~~l~e~~l-~~~~~d~~ka~~~l~~a~~~~~~i~~-------------------p~~~~~i~~~~g~~~~~~~~y~~A~~ 243 (428)
++.....+ ....|++.+|...|.+|.++.....+ |.. +..+..-|.++...|+|.+|..
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~-~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGAD-SEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-C-TTHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 33333333 35679999999999998765432211 110 1123345778888888888888
Q ss_pred HHHHHHH
Q 014255 244 DFFEAFK 250 (428)
Q Consensus 244 ~f~ea~~ 250 (428)
+|-.+.+
T Consensus 452 ~y~kALe 458 (472)
T 4g1t_A 452 DSERGLE 458 (472)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 8888865
No 91
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.88 E-value=0.00025 Score=57.86 Aligned_cols=101 Identities=11% Similarity=0.135 Sum_probs=82.3
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-C
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-H 217 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~-~ 217 (428)
...||..++..|+|++|.+.+++.....++ ....+...+.+|..+|++.+|...+.++..+..... .
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS------------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 347999999999999999999998887321 145677778899999999999999999987765433 3
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
....+..+...|.++...++|..|..+|-.+...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455667777799999999999999999998763
No 92
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.82 E-value=0.0016 Score=58.00 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhH
Q 014255 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (428)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl 134 (428)
.++...+.++...|+++++++.|.+.+... +. ++ .
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~--------------------~~--~---------------------- 42 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NN--------------------QD--S---------------------- 42 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TT--------------------CC--H----------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CC--------------------CC--c----------------------
Confidence 678889999999999999999999988764 20 12 1
Q ss_pred HHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014255 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 135 ~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (428)
.....+|..+...|++++|.+.+.+.....+ .....+...+.++...|++.+|...+.++....+.
T Consensus 43 --~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 43 --VTAYNCGVCADNIKKYKEAADYFDIAIKKNY------------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred --HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 0123578899999999999999999887632 13567777889999999999999999999765432
Q ss_pred CCChh---hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 215 IPHPR---IMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 215 i~~p~---~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
++. ..+..+...|.++...++|.+|...|..+...
T Consensus 109 --~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 109 --NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred --cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 222 23455677799999999999999999999763
No 93
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.80 E-value=0.00079 Score=61.25 Aligned_cols=191 Identities=10% Similarity=0.028 Sum_probs=120.3
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|++.++.+++. ..++..++.+|...|+++++++++.+.+... +... .....+...+....
T Consensus 56 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~~~la~~~~~~g 125 (275)
T 1xnf_A 56 LGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYN-----YAHLNRGIALYYGG 125 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCT-----HHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-cccc-----HHHHHHHHHHHHhc
Confidence 567999999999999987754 4678889999999999999999999999875 4322 22333333333222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+.....++.+++. .++.. .. .....+....|++++|...+.+....... + ... ...
T Consensus 126 --~~~~A~~~~~~a~~~---~~~~~-~~---~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~----~~~ 183 (275)
T 1xnf_A 126 --RDKLAQDDLLAFYQD---DPNDP-FR---SLWLYLAEQKLDEKQAKEVLKQHFEKSDK-----E----QWG----WNI 183 (275)
T ss_dssp --CHHHHHHHHHHHHHH---CTTCH-HH---HHHHHHHHHHHCHHHHHHHHHHHHHHSCC-----C----STH----HHH
T ss_pred --cHHHHHHHHHHHHHh---CCCCh-HH---HHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----c----hHH----HHH
Confidence 255556666666552 11111 11 11223346668999999998877776432 1 111 123
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
+.++...++..+|...+.++....... .|. ....+...|.++...|+|.+|..+|-.+....+
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSL-AEH-LSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHH-HHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccc-ccc-ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 455667777777777777764433321 111 223444557777788888888888888865443
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.77 E-value=0.00012 Score=61.61 Aligned_cols=120 Identities=11% Similarity=0.017 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
+++++.|++.|++.+..+++. ..+.-.++.+|.+.|++++++++|++.+... |
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~----~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----------------------p 62 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQK----SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----------------------E 62 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHH----HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred cChHHHHHHHHHHhcccCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 356899999999998776533 3345679999999999999999999888763 3
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+ +. .....+|.+|...|++++|...+++....-++ ..+.+...
T Consensus 63 ~-~~------------------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l 105 (150)
T 4ga2_A 63 R-DP------------------------KAHRFLGLLYELEENTDKAVECYRRSVELNPT------------QKDLVLKI 105 (150)
T ss_dssp T-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred C-CH------------------------HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC------------CHHHHHHH
Confidence 2 10 01347889999999999999999998887321 24566777
Q ss_pred HHHHHhhcCHHH-HHHHHHHHHhhh
Q 014255 189 IQMYTETKNNKK-LKQLYQKALAIK 212 (428)
Q Consensus 189 ~~l~~~~~d~~k-a~~~l~~a~~~~ 212 (428)
+.++...|++.+ ++.++++|.++.
T Consensus 106 a~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 106 AELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhC
Confidence 788999999865 455668887664
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.74 E-value=0.0006 Score=70.27 Aligned_cols=156 Identities=13% Similarity=0.045 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|++.++.++++ ..++..++.+|...|+++++.++|++.+... +.. ......+...+....
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~-----~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGH-----PEAVARLGRVRWTQQ 71 (568)
T ss_dssp -------------------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTC-----HHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-----HHHHHHHHHHHHHCC
Confidence 357899999999999887654 5678899999999999999999999998864 322 112222222222211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+...+.++.+++. ..+. ......+|.+|...|++++|.+.+++......+ + .+.+...
T Consensus 72 --~~~~A~~~~~~al~~---~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~l 131 (568)
T 2vsy_A 72 --RHAEAAVLLQQASDA---APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-----E-------PYITAQL 131 (568)
T ss_dssp --CHHHHHHHHHHHHHH---CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHH
T ss_pred --CHHHHHHHHHHHHhc---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHH
Confidence 244444555554442 1111 123446777777777777777777777666321 1 2344455
Q ss_pred HHHHHhh---cCHHHHHHHHHHHHhhhcc
Q 014255 189 IQMYTET---KNNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 189 ~~l~~~~---~d~~ka~~~l~~a~~~~~~ 214 (428)
+.++... |++.+|...+.++......
T Consensus 132 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 132 LNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 5666677 7777777777777655443
No 96
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.74 E-value=0.00025 Score=68.35 Aligned_cols=149 Identities=11% Similarity=0.146 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++..++.+|++.|+++++++.|.+.+... +.... ...+... ...
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~-------------------~~~~~~~-------------~~~ 192 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESS-------------------FSNEEAQ-------------KAQ 192 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCC-------------------CCSHHHH-------------HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hcccc-------------------CChHHHH-------------HHH
Confidence 46788999999999999999999999998876 43211 0010000 011
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+..++|.+|...|+|++|...+++.....+. ....+...+.++..+|++.+|...+.++..+.
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN------------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 223345679999999999999999999999887321 23566777889999999999999999998763
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHH-HHHHHHhh
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATD-FFEAFKNY 252 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~-f~ea~~~~ 252 (428)
.. ++ ..+...|.++...+++.+|... |...|..+
T Consensus 261 P~--~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 261 PN--NK----AAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp SS--CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 11 2333446777788889888554 44445443
No 97
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.73 E-value=0.014 Score=54.63 Aligned_cols=184 Identities=11% Similarity=0.117 Sum_probs=119.9
Q ss_pred cCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC
Q 014255 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (428)
+..+++++|++.++++...+|++ ...+..-+++.|...|+++.++..++.. .......+..+...+..
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~---~~e~~~~l~r~yi~~g~~~~al~~~~~~---------~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPER---DVERDVFLYRAYLAQRKYGVVLDEIKPS---------SAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHHHTTCHHHHHHHSCTT---------SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccCCchh---hHHHHHHHHHHHHHCCCHHHHHHHhccc---------CChhHHHHHHHHHHHcC
Confidence 34567999999999986655432 2345566789999999999999766431 11234566667777665
Q ss_pred CCCCChhHHHHHHHHHHHHHHHh-hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHH
Q 014255 107 SASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (428)
Q Consensus 107 ~~~~~~~~~~~~~~~~le~l~~~-~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~ 185 (428)
..+ .+...+.++.. +... ..+.. .....+|.++...|++++|.+.+.+ + ++ .+.+
T Consensus 78 ~~~--~~~A~~~l~~l---l~~~~~P~~~--~~~~~la~~~~~~g~~~~Al~~l~~-------~---~~-------~~~~ 133 (291)
T 3mkr_A 78 HSR--RDAIVAELDRE---MSRSVDVTNT--TFLLMAASIYFYDQNPDAALRTLHQ-------G---DS-------LECM 133 (291)
T ss_dssp STT--HHHHHHHHHHH---HHSCCCCSCH--HHHHHHHHHHHHTTCHHHHHHHHTT-------C---CS-------HHHH
T ss_pred CCc--HHHHHHHHHHH---HhcccCCCCH--HHHHHHHHHHHHCCCHHHHHHHHhC-------C---CC-------HHHH
Confidence 222 33333333332 2210 01111 2356899999999999999998887 1 11 3566
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhh--HhHHhhhcHHHHHHHHHHHHHhh
Q 014255 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGG--KMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 186 l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g--~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
...++++...|++.+|...++++.... ++. ... ....| .+....++|.+|...|-++...+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~-~~~--~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQD---EDA-TLT--QLATAWVSLAAGGEKLQDAYYIFQEMADKC 196 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHH--HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC---cCc-HHH--HHHHHHHHHHhCchHHHHHHHHHHHHHHhC
Confidence 777889999999999999999987663 221 111 11112 22335689999999999997753
No 98
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.71 E-value=0.00092 Score=66.41 Aligned_cols=203 Identities=9% Similarity=0.010 Sum_probs=114.6
Q ss_pred CCCHHHHHHHHHHhhcCCC----c-cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh---hHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEP----E-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR---NYSEKCINNI 100 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k---~~~~k~v~~i 100 (428)
.+++++|++.|++.++..+ + .......++.+++.+|...|+++++.+++++.+... +.... .....+....
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~-~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC-EKFSSPYRIESPELDCEE 142 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCSSCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-HhcccccchhhHHHHHHH
Confidence 5789999999999887532 1 122346788899999999999999999999998876 33211 1112222222
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHH---hhccHHHHHHHHHHHHhhccCCCCCcchhh
Q 014255 101 MDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF---DMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (428)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~---~~g~~~~A~~~l~el~~~~~~~~~~~d~~~ 177 (428)
...+......+.+...+.++.+++. . ++.. .....++.++. ..|++++|.+.+++.....+. +
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~-~--p~~~---~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-----~--- 208 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEK-K--PKNP---EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-----N--- 208 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHH-S--TTCH---HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-----C---
T ss_pred HHHHHHHccccHHHHHHHHHHHHHh-C--CCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-----c---
Confidence 1111100011233444555554442 1 1111 11223444433 446677888888777666321 1
Q ss_pred hhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 178 ~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
......+......++...+++.+|..++.++...... .+ ......|.++...++|..|...|..+.+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--VT----DVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc--HH----HHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 1222222223334455667888999999988655321 11 223345888889999999999999987643
No 99
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.70 E-value=0.0019 Score=52.55 Aligned_cols=116 Identities=9% Similarity=0.143 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...+.+++|..++++|+|++++++|++.+... |+ +.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----------------------p~-~~-------------------- 42 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-----------------------PS-NI-------------------- 42 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 46788899999999999999999999887653 33 10
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+|.+|...|+|++|.+.+.+.....++... + -......+.....++..+|++.+|...+.++....
T Consensus 43 ----~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~---~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 43 ----TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA--D---YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ----HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--h---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 01347899999999999999999888776443211 1 13456778888899999999999999999987542
Q ss_pred ccCCChhhHHHH
Q 014255 213 SAIPHPRIMGII 224 (428)
Q Consensus 213 ~~i~~p~~~~~i 224 (428)
++|.+...+
T Consensus 114 ---~~~~~~~~l 122 (127)
T 4gcn_A 114 ---RDPELVKKV 122 (127)
T ss_dssp ---CCHHHHHHH
T ss_pred ---cCHHHHHHH
Confidence 355544433
No 100
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.65 E-value=0.00092 Score=71.35 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++.+++.+|.++|++++++++|++.+... |+ ..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-----------------------P~-~~-------------------- 43 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-----------------------PE-FA-------------------- 43 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------SC-CH--------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 37899999999999999999999999887753 33 00
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
....+||.+|...|++++|.+.+++....-. ...+.+...+.++..+|++.+|...|++|..+.
T Consensus 44 ----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P------------~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~ 107 (723)
T 4gyw_A 44 ----AAHSNLASVLQQQGKLQEALMHYKEAIRISP------------TFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107 (723)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0134889999999999999999999988732 124677778889999999999999999998763
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
.. . +..+...|.++...|+|.+|..+|.++.+
T Consensus 108 P~-----~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 108 PA-----F-ADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp TT-----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-----C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 1 22334458888999999999999999975
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.65 E-value=0.0014 Score=69.42 Aligned_cols=154 Identities=9% Similarity=0.020 Sum_probs=107.6
Q ss_pred cCCCCHHHHHHHHHHhh--------cCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 014255 27 LVETDPEGALAGFAEVV--------AMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii--------~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (428)
+..+++++|++.|.+.+ +.+++. ..++..++.+|.+.|+++++++.|++.+... +.......
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~----- 471 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES----VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVW----- 471 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHH-----
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHH-----
Confidence 67788999999999999 554433 5678889999999999999999999999875 54322222
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhh
Q 014255 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (428)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (428)
.+...+.... +.+...+.++.+++. ..+. ......+|.++...|+|++ .+.+++....-.+
T Consensus 472 ~lg~~~~~~g--~~~~A~~~~~~al~l---~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~---------- 532 (681)
T 2pzi_A 472 YRAVAELLTG--DYDSATKHFTEVLDT---FPGE---LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG---------- 532 (681)
T ss_dssp HHHHHHHHHT--CHHHHHHHHHHHHHH---STTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT----------
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHh---CCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc----------
Confidence 1211111111 244556666665542 1111 1234589999999999999 9999888877321
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 179 ~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
..+.+...+.++...|++.+|...|+++..+
T Consensus 533 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 533 --VISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 2346677788999999999999999877543
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.62 E-value=0.0025 Score=50.31 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=33.4
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
.+|.++...|++++|.+.+.+....... + ...+...+.++...|++.+|...+..+..
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPR-----S-------AEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-----C-------hHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 4566666667777777666666554221 1 22334445566666667666666665543
No 103
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.60 E-value=0.0021 Score=53.45 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
...+..++..+...|+++++.+++.+.+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 42 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL 42 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 445555566666666666666666555553
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.58 E-value=0.00072 Score=58.07 Aligned_cols=154 Identities=10% Similarity=0.057 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|+..|+++++.+|++ ..++..++.++...|+++++.+.++..+... + .+ ...... ..+.....
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~--~~~~~~-~~~~~~~~- 87 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DN--SYKSLI-AKLELHQQ- 87 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CH--HHHHHH-HHHHHHHH-
T ss_pred HcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-Ch--HHHHHH-HHHHHHhh-
Confidence 3568999999999999887654 5778899999999999999999999886654 3 11 111111 11111111
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (428)
.+. . .....++.+++ ..++ .......+|.++...|++++|...+.++...-+.. .+ ...+..
T Consensus 88 ~~~-~-~a~~~~~~al~---~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~-------~~a~~~ 149 (176)
T 2r5s_A 88 AAE-S-PELKRLEQELA---ANPD---NFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QD-------GEVKKT 149 (176)
T ss_dssp HTS-C-HHHHHHHHHHH---HSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TT-------THHHHH
T ss_pred ccc-c-hHHHHHHHHHH---hCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---Ch-------HHHHHH
Confidence 010 0 12233333332 1111 11345688999999999999999999887764321 01 123344
Q ss_pred HHHHHHhhcCHHHHHHHHHHHH
Q 014255 188 EIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 188 e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
.+.++...|+..+|...|+++.
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHH
Confidence 4578888999999988888764
No 105
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.57 E-value=0.0027 Score=53.44 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|+++++..++. ..++..++.++...|+++++.+++...+... |
T Consensus 55 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------~ 107 (186)
T 3as5_A 55 TGAVDRGTELLERSLADAPDN----VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----------------------P 107 (186)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred cCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------c
Confidence 567999999999999886643 4677889999999999999999988876642 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+ +. .....+|.++...|++++|.+.+.+....... + ...+...
T Consensus 108 ~-~~------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l 150 (186)
T 3as5_A 108 I-NF------------------------NVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-----E-------GKVHRAI 150 (186)
T ss_dssp T-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHH
T ss_pred H-hH------------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-----c-------hHHHHHH
Confidence 2 00 01246788899999999999999998877421 1 3556677
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhc
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (428)
+.++...|++.+|..++.++....+
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7889999999999999998876543
No 106
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.52 E-value=0.0022 Score=54.70 Aligned_cols=121 Identities=12% Similarity=0.226 Sum_probs=82.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|++.|.+.++.++++ ..++..++.+|...|+++++.++|.+.+... +..
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~------------------- 77 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GEN------------------- 77 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSC-------------------
T ss_pred hccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-------------------
Confidence 4557999999999999887754 4678899999999999999999999887764 210
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHH-HHhhccH--HHHHHHHHHHHhhccCCCCCcchhhhhhHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-WFDMGEY--GRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l-~~~~g~~--~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (428)
. .....+|.+ +...|++ ++|.+.+.+.....+. + ...
T Consensus 78 ----~------------------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~ 117 (177)
T 2e2e_A 78 ----A------------------------ELYAALATVLYYQASQHMTAQTRAMIDKALALDSN-----E-------ITA 117 (177)
T ss_dssp ----H------------------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT-----C-------HHH
T ss_pred ----H------------------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC-----c-------HHH
Confidence 0 012255666 6667777 7777777777666321 1 234
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
+...+.++...|++.+|...+.++....
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 4555667777777777777777776543
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.51 E-value=0.0098 Score=46.77 Aligned_cols=130 Identities=17% Similarity=0.257 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhH
Q 014255 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (428)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl 134 (428)
.++..++..+...|+++++.+++...+... |+ +.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~-~~---------------------- 35 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------PR-SA---------------------- 35 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------TT-CH----------------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----------------------Cc-ch----------------------
Confidence 356778899999999999998887775532 22 00
Q ss_pred HHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014255 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 135 ~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (428)
.....+|.++...|++++|.+++.+....... + ...+...+.++...|++.+|...+..+......
T Consensus 36 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 36 --EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-----S-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred --hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-----c-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 01236788888999999999999998876321 1 234556678899999999999999988654321
Q ss_pred CCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 215 i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
++ ......|.++...+++.+|...|.++..
T Consensus 102 --~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 102 --SA----EAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp --CH----HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --Ch----HHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 12 2333457788889999999999988765
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.50 E-value=0.0014 Score=53.40 Aligned_cols=95 Identities=14% Similarity=0.128 Sum_probs=76.0
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..|+..|+|++|.+.+++.....+. ..+.+...+.++..+|++.+|...++++..+...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---- 79 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---- 79 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh----
Confidence 447899999999999999999998877321 2456777788999999999999999999766322
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
. ...+...|.++...|+|.+|...|-.+.+.
T Consensus 80 -~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 80 -F-IKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp -C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -h-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 223445588999999999999999999763
No 109
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.50 E-value=0.011 Score=49.01 Aligned_cols=94 Identities=6% Similarity=-0.016 Sum_probs=49.7
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|.++...|++++|.+.+.+.....+. ....+...+.++...|++.+|...+.++...... ++
T Consensus 50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~ 115 (166)
T 1a17_A 50 YGNRSLAYLRTECYGYALGDATRAIELDKK------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DK 115 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CH
Confidence 346666777777777777777666665221 1234445556666777777777777666544211 11
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
.. ......+..+...++|.+|...+-.+
T Consensus 116 ~~--~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 116 DA--KMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHcccch
Confidence 11 11122233344456666665555444
No 110
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.49 E-value=0.0064 Score=59.68 Aligned_cols=153 Identities=13% Similarity=0.129 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGK-YKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~-~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
.+++++|++.|.++++.+|++ ..++..++.++...|+ ++++++.|.+.+... +.......-. ..++.....
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~----~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~--g~~~~~~g~- 181 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAAN----YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR--RVLVEWLRD- 181 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH--HHHHHHHTC-
T ss_pred CCChHHHHHHHHHHHHhCccC----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH--HHHHHHccC-
Confidence 356899999999999988765 5677889999999996 999999999998875 5422222111 112222222
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (428)
.+.....++.+++. .. .+- .....+|.++...|++++|...+++....-.. ....+..
T Consensus 182 ----~~eAl~~~~kal~l-dP-~~~----~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~------------~~~a~~~ 239 (382)
T 2h6f_A 182 ----PSQELEFIADILNQ-DA-KNY----HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR------------NNSVWNQ 239 (382)
T ss_dssp ----CTTHHHHHHHHHHH-CT-TCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------------CHHHHHH
T ss_pred ----HHHHHHHHHHHHHh-Cc-cCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------CHHHHHH
Confidence 22345566665542 11 111 23357788888889999999888888877321 1234444
Q ss_pred HHHHHHh-hcCHHHH-----HHHHHHHHhh
Q 014255 188 EIQMYTE-TKNNKKL-----KQLYQKALAI 211 (428)
Q Consensus 188 e~~l~~~-~~d~~ka-----~~~l~~a~~~ 211 (428)
...++.. .|...+| ..+++++..+
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 5556666 3443666 3667766554
No 111
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.46 E-value=0.0032 Score=64.01 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=82.5
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
++..+||.+|...|+|++|..++++........-|.+. ......+...+.+|..+|++.+|..+|.+|..+.....
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H----p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN----AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 44568999999999999999999887765444334333 34566777788999999999999999999987766543
Q ss_pred ---ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 217 ---HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 217 ---~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
||.+.. +....+..+...+.|+.|-..|+.+-+
T Consensus 428 G~~Hp~~~~-~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 428 GPSHPITKD-LEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp CTTSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 565543 445556777788889999888887743
No 112
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.44 E-value=0.012 Score=55.23 Aligned_cols=191 Identities=10% Similarity=0.068 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhhc-CCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014255 32 PEGALAGFAEVVA-MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (428)
Q Consensus 32 ~~~Ai~~~~~ii~-~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (428)
+++|++.|++.++ ..|+. ..+....+.++...|+++++.+.|++.+... +.... .+............
T Consensus 80 ~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~----~~~~~~~~~~~~~~-- 148 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKN----MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPT----LVYIQYMKFARRAE-- 148 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTH----HHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCcc----HHHHHHHHHHHHhc--
Confidence 3899999999999 56654 4566788999999999999999999998854 42111 12222222221111
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHH-hhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHH
Q 014255 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~-~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~ 189 (428)
+.+.....++.+++. .. ..-.+| +..+.+.. ..|++++|.++++......++ + .+++..-+
T Consensus 149 ~~~~A~~~~~~a~~~-~p-~~~~~~----~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~~~ 210 (308)
T 2ond_A 149 GIKSGRMIFKKARED-AR-TRHHVY----VTAALMEYYCSKDKSVAFKIFELGLKKYGD-----I-------PEYVLAYI 210 (308)
T ss_dssp CHHHHHHHHHHHHTS-TT-CCTHHH----HHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-----C-------HHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-CC-CCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----c-------HHHHHHHH
Confidence 133344444444331 00 111222 23344433 269999999999998887532 1 34556667
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
.++...|++.+|+.+++++.... ..+|.-...++..-+.+....|++..|...+..+...+.
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~--~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSS--SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 78889999999999999986531 113332334554445666678899999988888877654
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.42 E-value=0.0054 Score=53.61 Aligned_cols=128 Identities=18% Similarity=0.111 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|.++++. ...++..++.+|...|++++++++|.+.+... |
T Consensus 19 ~~~~~~A~~~~~~a~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------~ 68 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQDP-------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-----------------------K 68 (213)
T ss_dssp TTCHHHHHHHHHTSSSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred hCCHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------c
Confidence 46799999999998622 24688999999999999999999988876642 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcch----hhhhhHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ----KKGSQLLEV 184 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~----~~~~~~~e~ 184 (428)
+ .. .....+|.+|...|++++|.+.+++............-. .......+.
T Consensus 69 ~-~~------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T 1hh8_A 69 H-LA------------------------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV 123 (213)
T ss_dssp T-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH
T ss_pred c-ch------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHH
Confidence 2 00 113478999999999999999999998875432100000 001234577
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
+...+.++...|++.+|...+.++...
T Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 124 LYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 778888899999999999999888754
No 114
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.40 E-value=0.0051 Score=48.51 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=79.8
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-CC
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PH 217 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i-~~ 217 (428)
...+|..+...|++++|...+.+.....+. ...++...+.++...|++.+|..++.++....... .+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh
Confidence 458899999999999999999999887421 13556667788999999999999999997765432 22
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
...........|.++...++|..|..+|..+....
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 33335556667889999999999999999987743
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.39 E-value=0.0032 Score=58.85 Aligned_cols=154 Identities=8% Similarity=-0.005 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|++.|+++++.+|++ ..++..++.++...|+++++.+.+.+.+... +. .........+......
T Consensus 129 ~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p~----~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 129 QESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-QD----TRYQGLVAQIELLXQA 199 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-CS----HHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-cc----hHHHHHHHHHHHHhhc
Confidence 4567999999999999988765 5678889999999999999999998886653 31 1122222222222210
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (428)
. .+.....++.+++ ...+ .....+.||.++...|++++|...+.++...-++. + -.+.+..
T Consensus 200 ~---~~~a~~~l~~al~---~~P~---~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~----~------~~~a~~~ 260 (287)
T 3qou_A 200 A---DTPEIQQLQQQVA---ENPE---DAALATQLALQLHQVGRNEEALELLFGHLRXDLTA----A------DGQTRXT 260 (287)
T ss_dssp T---SCHHHHHHHHHHH---HCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----G------GGHHHHH
T ss_pred c---cCccHHHHHHHHh---cCCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----c------cchHHHH
Confidence 1 1112233333322 1111 11345588999999999999999999988874321 0 1234445
Q ss_pred HHHHHHhhcCHHHHHHHHHHHH
Q 014255 188 EIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 188 e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
.+.++...|+...|...|+++.
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 5577888898888888887764
No 116
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.39 E-value=0.0073 Score=48.02 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=77.9
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..+...|+|++|.+.+.++....++ + ....+.+...+.++...|++.+|...+.++....+. ++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~ 73 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-----G----VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT--HD 73 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----S----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--ST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-----C----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--Cc
Confidence 357889999999999999999999887432 1 233466677788999999999999999988664321 11
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
.........|.++...|+|.+|...|-.+...+
T Consensus 74 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 74 -KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp -THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 123334455888999999999999999998765
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.38 E-value=0.0035 Score=50.90 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...+.++.|..|++.|+|+++++.|++.+... |+ +.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~-------------------- 47 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----------------------PE-NA-------------------- 47 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 36788899999999999999999999887653 32 10
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+|..|...|++++|.+.+++....-+ ...+.+...+.++..+|++.+|...+.++.++.
T Consensus 48 ----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 48 ----ILYSNRAACLTKLMEFQRALDDCDTCIRLDS------------KFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHhhHHHhhccHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 0134788899999999999999998887722 124567777889999999999999999997763
No 118
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.35 E-value=0.0017 Score=54.50 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=72.7
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
.+.||.+|...|+|++|.+.+++....-++ ..+.+...+.+|...|++.+|...+.++..+.+. ++
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~ 99 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQER------------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT--QK 99 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC--CH
Confidence 458999999999999999999999888321 2466777788999999999999999999776322 12
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHH-HHH
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFE-AFK 250 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e-a~~ 250 (428)
..+...|.++...+++.+|...|++ +.+
T Consensus 100 ----~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 100 ----DLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp ----HHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2233447788889999999888764 544
No 119
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.34 E-value=0.0011 Score=66.59 Aligned_cols=145 Identities=10% Similarity=0.112 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++...+..|++.|+|++++..|.+.+... +.... ...+... ...
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~-------------------~~~~~~~-------------~~~ 313 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYG-------------------LSEKESK-------------ASE 313 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCS-------------------CCHHHHH-------------HHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-ccccc-------------------CChHHHH-------------HHH
Confidence 46788899999999999999999999998876 43211 0010000 011
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+..++|..|...|+|++|...+.+....-.+ ....+...+.+|..+|++.+|...+.++..+.
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 233456679999999999999999999999887321 24567777889999999999999999998653
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
..- + ..+...|.++...+++..|.+..+..
T Consensus 382 P~~--~----~a~~~l~~~~~~~~~~~~a~~~~~~~ 411 (457)
T 1kt0_A 382 PQN--K----AARLQISMCQKKAKEHNERDRRIYAN 411 (457)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--H----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1 12233456666777888777665554
No 120
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0093 Score=47.53 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..++..|+|++|.+.+.+.....+. ....+...+.++...|++.+|...++++..+...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---- 70 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---- 70 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----
Confidence 357899999999999999999999887431 1356777788999999999999999999766322
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
. ...+...|.++...|+|.+|...|..+....
T Consensus 71 -~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 71 -F-VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp -C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -c-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 1 2234455888999999999999999997654
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.24 E-value=0.0073 Score=52.74 Aligned_cols=104 Identities=11% Similarity=0.017 Sum_probs=79.6
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP- 216 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~- 216 (428)
+...+|.+|...|++++|.+.+.+....... ....+...+.++...|++.+|...+.++........
T Consensus 39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 106 (213)
T 1hh8_A 39 ICFNIGCMYTILKNMTEAEKAFTRSINRDKH------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 106 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccH
Confidence 4568999999999999999999998887321 235667778899999999999999999976543321
Q ss_pred ---------ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 217 ---------HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 217 ---------~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
............|.++...|+|.+|..+|-.+.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 107 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 1011234555668899999999999999999976543
No 122
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.24 E-value=0.021 Score=47.83 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
....+...|..+++.|+|+++++.|+..+..+ +.... ...|+ +. +.. ...
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~-~~~~~--------------~~~~~-~~----~~~----------~~~ 59 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRL-DTLIL--------------REKPG-EP----EWV----------ELD 59 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHH--------------TSCTT-SH----HHH----------HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhcc--------------cCCCC-HH----HHH----------HHH
Confidence 47888999999999999999999999999886 33110 11232 11 100 011
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+...+|..|...|+|++|...+.+....-+ .....+...+.++..+|++.+|...+.++..+.
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE------------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC------------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 22234566899999999999999999999988732 124567777889999999999999999987663
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.22 E-value=0.065 Score=47.25 Aligned_cols=178 Identities=7% Similarity=0.091 Sum_probs=118.6
Q ss_pred HHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC--C
Q 014255 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS--Q 110 (428)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~--~ 110 (428)
.+|++.|++..+.. ...++..++.+|...+++++++++|++....- -......+...+.. .+ .
T Consensus 3 ~eA~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~~ 67 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQA 67 (212)
T ss_dssp -CTTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTSC
T ss_pred chHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCCC
Confidence 56888888887652 26788999999999999999999999987641 12334445555544 21 1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHh----hccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHH
Q 014255 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (428)
Q Consensus 111 ~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~----~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (428)
+.+...++++.+.+. . .......||.+|.. .+++++|.+++++....-. . ....+.+.
T Consensus 68 ~~~~A~~~~~~A~~~----g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-----~-----~~~~~a~~ 129 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA----G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-----S-----DAAVDAQM 129 (212)
T ss_dssp CHHHHHHHHHHHHHT----T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT-----S-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC-----C-----cchHHHHH
Confidence 355556666665331 1 12345689999988 8899999999998866511 0 01244555
Q ss_pred HHHHHHHh----hcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHh------hhcHHHHHHHHHHHHH
Q 014255 187 IEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA------ERQWADAATDFFEAFK 250 (428)
Q Consensus 187 ~e~~l~~~----~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~------~~~y~~A~~~f~ea~~ 250 (428)
....+|.. .+|+.+|..++.+|.... .+|. +.+ ..|.++.. .+|+..|..+|..+.+
T Consensus 130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~--a~~--~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 130 LLGLIYASGVHGPEDDVKASEYFKGSSSLS---RTGY--AEY--WAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHTS---CTTH--HHH--HHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CCHH--HHH--HHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 66677777 789999999999986541 1222 222 22555542 3499999999999865
No 124
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.20 E-value=0.0069 Score=50.95 Aligned_cols=97 Identities=7% Similarity=0.003 Sum_probs=77.9
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
....+|..++..|+|++|.+.+++....... ...++...+.+|...|++.+|...++++..+...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--- 77 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--- 77 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---
Confidence 3558899999999999999999999887431 2456777788999999999999999999766322
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
....+...|.++...++|.+|..+|..+....
T Consensus 78 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 78 ---YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 12344556888999999999999999997754
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.16 E-value=0.012 Score=49.63 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++..++..+.+.|+++++.+.|+..+..- |+ +.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----------------------P~-~~-------------------- 70 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----------------------FY-NV-------------------- 70 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 46788999999999999999999999887764 32 11
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....||..|...|+|++|.+.+++....-++ + .+.+...+.++..+|++.+|...++++....
T Consensus 71 ----~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-----~-------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 71 ----DYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-----D-------YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-----C-------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-----C-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 01247889999999999999999999888432 1 2456667788999999999999999987653
No 126
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.15 E-value=0.0096 Score=47.86 Aligned_cols=97 Identities=9% Similarity=0.047 Sum_probs=77.0
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..+...|+|++|...+.+.....+. ...++...+.++...|++.+|...+.++......
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---- 75 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPL------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---- 75 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----
Confidence 458899999999999999999998887431 1356777788999999999999999998765322
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
....+...|.++...++|..|...|..+.....
T Consensus 76 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 76 --SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 122445568888999999999999999977543
No 127
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0063 Score=60.71 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHhhcCCC----ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 014255 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (428)
++++++|++.+++.++... ++-....+++.+++.+|..+|+|+++.+++++.+...+...+
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg--------------- 364 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP--------------- 364 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC---------------
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC---------------
Confidence 4579999999999998653 334568999999999999999999999999999988622211
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCC
Q 014255 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (428)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~ 172 (428)
..+|+ ......+||.+|...|+|++|.+++++........-|.
T Consensus 365 ~~Hp~-------------------------~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~ 407 (429)
T 3qwp_A 365 GSHPV-------------------------RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR 407 (429)
T ss_dssp SSCHH-------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCChH-------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 01121 11234599999999999999999999888765544443
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.12 E-value=0.016 Score=47.55 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=75.4
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..++..|+|++|.+.+.++...-+. ....+...+.++...|++.+|...++++...... +|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~ 86 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY------------DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EP 86 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--Cc
Confidence 457899999999999999999998877321 1345666778899999999999999999766432 22
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
. .+...|.++...|+|.+|...|-.+....
T Consensus 87 ~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 87 R----FPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 33445888999999999999999987654
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.10 E-value=0.0079 Score=50.72 Aligned_cols=98 Identities=10% Similarity=0.015 Sum_probs=78.2
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
.....+|..+...|+|++|.+.++.+...-+. ..+.+...+.++...|++.+|...|+++..+.+.-
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~- 103 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND- 103 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-
Confidence 34568999999999999999999999888321 23566777889999999999999999998765332
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
|. .+...|.++...|+|.+|..+|-.+....
T Consensus 104 -~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 -YT----PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -CH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -cH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22 33445888999999999999999997754
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.08 E-value=0.012 Score=49.16 Aligned_cols=112 Identities=11% Similarity=0.014 Sum_probs=82.0
Q ss_pred HHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHH
Q 014255 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (428)
Q Consensus 38 ~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~ 117 (428)
.|+++++.+|++ ..++..++..+...|+++++++.|...+..- |+ +.
T Consensus 9 ~~~~al~~~p~~----~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~----- 55 (148)
T 2vgx_A 9 TIAMLNEISSDT----LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----------------------HY-DS----- 55 (148)
T ss_dssp SHHHHTTCCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH-----
T ss_pred hHHHHHcCCHhh----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------------------cc-cH-----
Confidence 456666665432 5677889999999999999999988776642 32 10
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcC
Q 014255 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (428)
Q Consensus 118 ~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d 197 (428)
. ....+|.++...|+|++|.+.+.+.....++ + .+.+...+.++...|+
T Consensus 56 ---------------~----~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~-------~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 56 ---------------R----FFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-----E-------PRFPFHAAECLLQXGE 104 (148)
T ss_dssp ---------------H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-------THHHHHHHHHHHHTTC
T ss_pred ---------------H----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----C-------chHHHHHHHHHHHcCC
Confidence 0 1236788899999999999999998877431 1 2345566788889999
Q ss_pred HHHHHHHHHHHHhhhc
Q 014255 198 NKKLKQLYQKALAIKS 213 (428)
Q Consensus 198 ~~ka~~~l~~a~~~~~ 213 (428)
+.+|...++++.....
T Consensus 105 ~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 105 LAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCc
Confidence 9999999998876654
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.07 E-value=0.013 Score=48.09 Aligned_cols=113 Identities=10% Similarity=0.031 Sum_probs=82.0
Q ss_pred HHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHH
Q 014255 37 AGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLR 116 (428)
Q Consensus 37 ~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~ 116 (428)
..|+++++.+|++ ..++..++..+...|+++++.++|...+... |+ +.
T Consensus 5 ~~l~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~---- 52 (142)
T 2xcb_A 5 GTLAMLRGLSEDT----LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-----------------------HY-DA---- 52 (142)
T ss_dssp ----CCTTCCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH----
T ss_pred hhHHHHHcCCHHH----HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-----------------------Cc-cH----
Confidence 3455565555432 5677889999999999999999998877653 32 11
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 014255 117 EFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK 196 (428)
Q Consensus 117 ~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~ 196 (428)
.....+|.++...|+|++|.+.+.......++ + .+.+...+.++...|
T Consensus 53 --------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 53 --------------------RYFLGLGACRQSLGLYEQALQSYSYGALMDIN-----E-------PRFPFHAAECHLQLG 100 (142)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------THHHHHHHHHHHHTT
T ss_pred --------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----C-------cHHHHHHHHHHHHcC
Confidence 01237888999999999999999999887432 1 234556678899999
Q ss_pred CHHHHHHHHHHHHhhhc
Q 014255 197 NNKKLKQLYQKALAIKS 213 (428)
Q Consensus 197 d~~ka~~~l~~a~~~~~ 213 (428)
++.+|...++++.....
T Consensus 101 ~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 101 DLDGAESGFYSARALAA 117 (142)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 99999999999877654
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.07 E-value=0.014 Score=48.64 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=75.5
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
....+|..+...|+|++|...++.+...-+. + .+.+...+.++...|++.+|...++++..+... +
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~ 88 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-----D-------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--E 88 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-----c-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--C
Confidence 3457899999999999999999998877321 1 345566678899999999999999999766432 2
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
|. .....|.++...|++.+|...|..+....
T Consensus 89 ~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 89 PR----FPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ch----HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 22 23445888999999999999999987644
No 133
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.04 E-value=0.0044 Score=61.92 Aligned_cols=104 Identities=10% Similarity=0.082 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHhhcCCC----ccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 014255 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (428)
.+++++|+..|++.++... ++-..+.+++.+|+.+|..+|+|++|.+++++.+...+...
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l---------------- 374 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY---------------- 374 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS----------------
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc----------------
Confidence 4579999999999998543 23345899999999999999999999999999988763321
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCC
Q 014255 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (428)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~ 172 (428)
. |+. . -......+||.+|...|+|++|.+++++........-|.
T Consensus 375 G--~~H-p---------------------~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~ 418 (433)
T 3qww_A 375 P--VYS-L---------------------NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGK 418 (433)
T ss_dssp C--SSC-H---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred C--CCC-h---------------------HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Confidence 1 221 1 001224599999999999999999999888765443343
No 134
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.03 E-value=0.0087 Score=47.55 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|.++++..|++ .+...++..++.++...|+++++.+.|..++... +
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p---------------------- 70 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-P---------------------- 70 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T----------------------
T ss_pred hCCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-C----------------------
Confidence 467999999999999887653 3345788899999999999999999999887764 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
+... .......+|.++...|++++|.+.++++....+
T Consensus 71 ~~~~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 71 THDK----------------------AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp TSTT----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CCcc----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 2000 001234789999999999999999999988754
No 135
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.01 E-value=0.11 Score=51.92 Aligned_cols=179 Identities=11% Similarity=0.054 Sum_probs=113.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (428)
...|+++|++.|++..+.. ...+...++.+|.. .++++++.++|.+....- .. .....+...
T Consensus 55 ~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~-----~a~~~Lg~~ 120 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP-----QAQQNLGVM 120 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-----HHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH-----HHHHHHHHH
Confidence 3578999999999997652 15688899999999 999999999999887641 11 122223333
Q ss_pred hcCCC--CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHh----hccHHHHHHHHHHHHhhccCCCCCcchhh
Q 014255 104 VSGSA--SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKK 177 (428)
Q Consensus 104 ~~~~~--~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~----~g~~~~A~~~l~el~~~~~~~~~~~d~~~ 177 (428)
+.... ..+.+....+++.+.+. + .......||.+|.. .+++++|.+++++.... | +
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----~--~--- 182 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAEQ----G----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-----G--N--- 182 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T--C---
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----C--C---
Confidence 32211 12355556666655431 1 12345588888887 78999999988887654 1 1
Q ss_pred hhhHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHh----hhcHHHHHHHHHHHH
Q 014255 178 GSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAF 249 (428)
Q Consensus 178 ~~~~~e~~l~e~~l~~~----~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~----~~~y~~A~~~f~ea~ 249 (428)
.+.+.....+|.. .+|+.+|..++.++... .+|..+ ...|.++.. .+|+.+|...|..+.
T Consensus 183 ----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~----~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 183 ----VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDELGQ----LHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp ----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHH----HHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHHHH----HHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 1233344456666 78888888888887543 122211 122444443 678888888877775
Q ss_pred H
Q 014255 250 K 250 (428)
Q Consensus 250 ~ 250 (428)
+
T Consensus 251 ~ 251 (490)
T 2xm6_A 251 E 251 (490)
T ss_dssp T
T ss_pred H
Confidence 4
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.00 E-value=0.019 Score=49.84 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
....+..++..++..|+|++++++|.+.+... +.. |+..... +.. ...
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~-------------------~~~~~~~-----------~~~-~~~ 84 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHT-------------------EEWDDQI-----------LLD-KKK 84 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTC-------------------TTCCCHH-----------HHH-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcc-------------------cccchhh-----------HHH-HHH
Confidence 46678889999999999999999999998875 321 1100000 000 011
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.+...+...+|..+...|+|++|.+.+......... ....+...+.++...|++.+|...+.++..+.
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN------------NVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 222345668999999999999999999999887321 13566777889999999999999999987663
No 137
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.98 E-value=0.042 Score=55.70 Aligned_cols=189 Identities=12% Similarity=0.077 Sum_probs=118.0
Q ss_pred HHHHHHHHhhc-CCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCCh
Q 014255 34 GALAGFAEVVA-MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (428)
Q Consensus 34 ~Ai~~~~~ii~-~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~ 112 (428)
+|++.|++.++ ..|+. .......+.++.+.|+++++.+.|++.+... +... +.+....+....... +.
T Consensus 304 ~A~~~~~~Al~~~~p~~----~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~~~~~~~~~~~~--~~ 372 (530)
T 2ooe_A 304 EAANIYERAISTLLKKN----MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDP----TLVYIQYMKFARRAE--GI 372 (530)
T ss_dssp HHHHHHHHHTTTTCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCH----HHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHhCccc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCc----hHHHHHHHHHHHHhc--CH
Confidence 89999999997 55543 4566788899999999999999999998864 3211 112222222211100 12
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHH-HHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHH
Q 014255 113 SLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (428)
Q Consensus 113 ~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l-~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l 191 (428)
+.....++.+++. ... ...+....+.+ +...|++++|.++++...+..++ + .+++..-+.+
T Consensus 373 ~~A~~~~~~Al~~---~~~---~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-----~-------~~~~~~~~~~ 434 (530)
T 2ooe_A 373 KSGRMIFKKARED---ART---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-----I-------PEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHTC---TTC---CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-----C-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---cCC---chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-----C-------HHHHHHHHHH
Confidence 2233333333221 110 01112233333 33589999999999998887542 1 3455666677
Q ss_pred HHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 192 YTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 192 ~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
....|+..+|+..++++..... .+|.....++..-+.+....|+..++...+..+...++
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHhCCCHhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 8889999999999999865421 13443444554444555567889998888888877664
No 138
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.98 E-value=0.079 Score=51.77 Aligned_cols=253 Identities=7% Similarity=-0.007 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++..++.++...|+++++++.|.+.+... +..... .......+.. .+.+.+.....++.+++. ..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a-----~~~~g~~l~~-~g~d~~eAl~~~~~al~l---~P~- 164 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTV-----WHFRRVLLKS-LQKDLHEEMNYITAIIEE---QPK- 164 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHH-----HHHHHHHHHH-TTCCHHHHHHHHHHHHHH---CTT-
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHH-----HHHHHHHHHH-cccCHHHHHHHHHHHHHH---CCC-
Confidence 36788889999999999999999999999875 543222 1122222221 111144455555555442 111
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
...+...+|.++...|++++|...+++....-.+ ....+.....++..+|++.+|...++++..+.
T Consensus 165 --~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~------------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 165 --NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 230 (382)
T ss_dssp --CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 1134457899999999999999999999887321 23556666778889999999999999997653
Q ss_pred ccCCChhhHHHHHHhhhHhHHh-hhcHHHH-----HHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcc--
Q 014255 213 SAIPHPRIMGIIRECGGKMHMA-ERQWADA-----ATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQ-- 284 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~-~~~y~~A-----~~~f~ea~~~~~~~~~~~~~~~l~y~~L~~lL~~~~~~~~~~~-- 284 (428)
.. ....+..-|.++.. .+.+.+| ..+|..+...- |....+ +.-+..++.......+..-
T Consensus 231 P~------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-----P~~~~a--~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 231 VR------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-----PHNESA--WNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp TT------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-----TTCHHH--HHHHHHHHTTTCGGGCHHHHH
T ss_pred CC------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-----CCCHHH--HHHHHHHHHccCccchHHHHH
Confidence 22 11233334555555 4443666 36666665421 221122 2223333332111000000
Q ss_pred cccccCCCcchH-HHHHHHHHHhhC------CHHH-HHHHHHHhHHh-hcCChhHHHHHHHHHHHHHH
Q 014255 285 EAKPYKNDPEIL-AMTNLIAAYQRN------EIIE-FEKILKSNRKT-IMDDPFIRNYIEDLLKNVRT 343 (428)
Q Consensus 285 ~~~~~~~~~~~~-~l~~L~~af~~~------dl~~-f~~~l~~~~~~-l~~D~~l~~~~~~l~~~i~~ 343 (428)
.......+|... .+..|..++... +... +.+.+.-+... ...||.-...|..+...+..
T Consensus 298 ~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 298 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 000011234433 455667766542 2222 45666666665 67899988888777665543
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.95 E-value=0.037 Score=46.30 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
....+..++.++...|++++++++|.+.+... |+ +.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~-------------------- 45 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----------------------PA-NP-------------------- 45 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------------TT-CH--------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------Cc-CH--------------------
Confidence 47888999999999999999999999887753 22 00
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.+...+|.+|...|+|++|...+.+....... ....+...+.++..+|++.+|...+.++..+.
T Consensus 46 ----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 46 ----IYLSNRAAAYSASGQHEKAAEDAELATVVDPK------------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 12347888999999999999999998887321 24566777888999999999999999987765
Q ss_pred cc
Q 014255 213 SA 214 (428)
Q Consensus 213 ~~ 214 (428)
..
T Consensus 110 p~ 111 (164)
T 3sz7_A 110 GN 111 (164)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.92 E-value=0.017 Score=45.64 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=75.0
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
....+|..+...|++++|.+.+.+....... ..+.+...+.++...|++.+|...+.++......
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--- 82 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--- 82 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---
Confidence 3458899999999999999999998776321 1456667778899999999999999998765321
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
....+...|.++...++|.+|...|.++...
T Consensus 83 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 83 ---FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 1223445588888999999999999998764
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.92 E-value=0.035 Score=43.34 Aligned_cols=97 Identities=9% Similarity=0.016 Sum_probs=75.5
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
.....+|..+...|++++|.+.+.+....... + ...+...+.++...|++.+|...+.++......
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 78 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-----N-------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-- 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----C-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--
Confidence 34568899999999999999999998877421 1 345667778899999999999999998765211
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+ ...+...|.++...++|.+|...|..+...
T Consensus 79 ~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 79 Y----SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 1 224455688889999999999999998764
No 142
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.90 E-value=0.066 Score=50.04 Aligned_cols=161 Identities=11% Similarity=0.090 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|++.++..+.+.. .+....+.++.+.|+++++.+.|.+.+..- +.-....... ..+... ...
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~---a~~~~~-~~~ 183 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA---ALMEYY-CSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHH---HHHHHH-TSC
T ss_pred cCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHH---HHHHHH-HcC
Confidence 45789999999999998775422 267788999999999999999999998764 3222221111 111111 112
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e 188 (428)
+.+.....++.+++.. . .+..+ ...++.++...|++++|..+++.....+.-++ + ...+++..-
T Consensus 184 --~~~~A~~~~~~al~~~-p-~~~~~----~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p---~-----~~~~l~~~~ 247 (308)
T 2ond_A 184 --DKSVAFKIFELGLKKY-G-DIPEY----VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP---E-----KSGEIWARF 247 (308)
T ss_dssp --CHHHHHHHHHHHHHHH-T-TCHHH----HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG---G-----GCHHHHHHH
T ss_pred --CHHHHHHHHHHHHHhC-C-CcHHH----HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH---H-----HHHHHHHHH
Confidence 2556677777776631 1 12223 35789999999999999999999988642111 1 123455566
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhc
Q 014255 189 IQMYTETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (428)
+.+....|+...|..++.++.....
T Consensus 248 ~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 248 LAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 6778889999999999998876543
No 143
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.89 E-value=0.17 Score=50.51 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=42.6
Q ss_pred HHHHHHHHhhc---cHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhh
Q 014255 140 LKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 140 ~~La~l~~~~g---~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~----~~d~~ka~~~l~~a~~~~ 212 (428)
..||.+|...| ++++|.+++++....- + .+.+.....+|.. .+|+.+|..++++|....
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-------~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-------E-------KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-------C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC-------C-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 35555555533 5555555555554430 1 1222333344554 566666666666654321
Q ss_pred ccCCChhhHHHHHHhhhHhHHh----hhcHHHHHHHHHHHHH
Q 014255 213 SAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~----~~~y~~A~~~f~ea~~ 250 (428)
+|.. ....|.++.. .+|+..|...|..+..
T Consensus 398 ----~~~a----~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 398 ----LSAA----QVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp ----CHHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ----CHHH----HHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 1211 1112444443 5666666666666644
No 144
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.017 Score=46.72 Aligned_cols=99 Identities=10% Similarity=-0.040 Sum_probs=77.2
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
....+|..+...|+|++|.+.+++....... + ......+...+.++...|++.+|...+.++...... +
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~ 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDAT-----P----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--D 98 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-----H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--C
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-----c----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--C
Confidence 3458899999999999999999999876431 1 234677777888999999999999999998765321 1
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
...+...|.++...++|.+|...|.++...
T Consensus 99 ----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 ----VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 233445588888999999999999998764
No 145
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.87 E-value=0.022 Score=55.43 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
....+..++..+++.|+++++++.|++.+... +... .. .. . .+ +....
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-~~~~---------------~~-~~--~---~~----------~~~~~ 269 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSR---------------AA-AE--D---AD----------GAKLQ 269 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHH---------------HH-SC--H---HH----------HGGGH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hcCc---------------cc-cC--h---HH----------HHHHH
Confidence 35678889999999999999999999999876 3321 00 01 0 00 00111
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+..++|..|+..|+|++|.+.+++...... .....+...+.+|..+|++.+|...+.+|..+.
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP------------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 22234566899999999999999999999987632 124566777889999999999999999997763
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHH
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~ 244 (428)
.. ++. +....+.++...+++.++.+.
T Consensus 338 P~--~~~----~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 338 PE--DKA----IQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TT--CHH----HHHHHHHHHHHHHHHHHHHHC
T ss_pred CC--CHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 22 222 222223444445555555443
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.83 E-value=0.018 Score=45.17 Aligned_cols=28 Identities=4% Similarity=-0.169 Sum_probs=24.4
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
...+|.++...|++++|.+.+.+.....
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 3578899999999999999999988874
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.83 E-value=0.017 Score=44.32 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..+...|++++|.+.+.+.....+. + ...+...+.++...|++.+|...+.++...... +
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~- 71 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-----N-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--W- 71 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C-
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----c-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--c-
Confidence 457899999999999999999999887431 1 345666778899999999999999988765321 1
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
.......|.++...++|.+|...|..+...
T Consensus 72 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 72 ---GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 223444577888899999999999988653
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.82 E-value=0.0067 Score=46.38 Aligned_cols=98 Identities=6% Similarity=-0.007 Sum_probs=75.0
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|.++...|++++|...+.+....... + .+.+...+.++...|++.+|...+.++......
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---- 72 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPE-----E-------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED---- 72 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----
Confidence 457899999999999999999998887431 1 345667778899999999999999998765322
Q ss_pred hhHHHHHHhhhHhHHhh-hcHHHHHHHHHHHHHhh
Q 014255 219 RIMGIIRECGGKMHMAE-RQWADAATDFFEAFKNY 252 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~-~~y~~A~~~f~ea~~~~ 252 (428)
......+...|.++... ++|.+|..+|..+....
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 01123445557888889 99999999999886543
No 149
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.82 E-value=0.017 Score=48.31 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=78.5
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCC-----CCCcch-hhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQRE-----DGTDDQ-KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~-----~~~~d~-~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
....+|..++..|+|++|...+.+....+... +...+. ........++...+.+|..+|++.+|...++++..+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34588999999999999999988887763211 000000 001345678888889999999999999999999766
Q ss_pred hccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 212 ~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
. |.. ...+...|.++...|+|..|..+|..+...
T Consensus 93 ~-----p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 E-----ETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp S-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-----Ccc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3 221 223444588999999999999999998764
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.80 E-value=0.013 Score=46.87 Aligned_cols=93 Identities=6% Similarity=-0.026 Sum_probs=73.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~ 219 (428)
+.+|..+...|++++|...+++....-++ ..+.+...+.++...|++.+|...++++..+... ++
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~- 85 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DI- 85 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH-
Confidence 47889999999999999999999887321 2456667778899999999999999999766322 11
Q ss_pred hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 220 IMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
..+...|.++...|++.+|...|..+..
T Consensus 86 ---~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 86 ---AVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334557888899999999999988765
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.79 E-value=0.016 Score=55.39 Aligned_cols=120 Identities=9% Similarity=0.081 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCccc-----------hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKA-----------EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~-----------~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (428)
..+++++|++.|.+.++..++.. .....++.+++.+|.+.|++++++++|.+.+...
T Consensus 159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------------ 226 (336)
T 1p5q_A 159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD------------ 226 (336)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 35689999999999999876431 1225788899999999999999999998887753
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchh
Q 014255 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK 176 (428)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~ 176 (428)
|+ +. ....++|.+|...|++++|...+++.....+. +
T Consensus 227 -----------p~-~~------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-----~-- 263 (336)
T 1p5q_A 227 -----------SN-NE------------------------KGLSRRGEAHLAVNDFELARADFQKVLQLYPN-----N-- 263 (336)
T ss_dssp -----------TT-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----C--
T ss_pred -----------CC-cH------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----C--
Confidence 32 00 12347899999999999999999999888432 1
Q ss_pred hhhhHHHHHHHHHHHHHhhcCHHHH-HHHHHH
Q 014255 177 KGSQLLEVYAIEIQMYTETKNNKKL-KQLYQK 207 (428)
Q Consensus 177 ~~~~~~e~~l~e~~l~~~~~d~~ka-~~~l~~ 207 (428)
.+.+.....++...|++.++ +..|.+
T Consensus 264 -----~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 264 -----KAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455556777888888777 444443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.039 Score=43.72 Aligned_cols=99 Identities=9% Similarity=0.079 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
...+...+..+++.|+++++++.|++.+... |+ +.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------p~-~~--------------------- 38 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----------------------PE-DA--------------------- 38 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH---------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------CC-Ch---------------------
Confidence 5677889999999999999999998887753 22 00
Q ss_pred HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 134 l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+|..+...|+|++|.+.+.+.....++ ....+...+.++...|++.+|...+.++..+.
T Consensus 39 ---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 39 ---RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------------FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 12347889999999999999999999887321 14566777889999999999999999987664
No 153
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.78 E-value=0.13 Score=57.96 Aligned_cols=182 Identities=13% Similarity=0.153 Sum_probs=101.3
Q ss_pred hhcccCC-CCHHHHHHHHHHhhcCCC---ccc--h-------------hhHHH--------HHHHHHHHHHhCCHHHHHH
Q 014255 23 LEKGLVE-TDPEGALAGFAEVVAMEP---EKA--E-------------WGFKA--------LKQTVKLYYRLGKYKEMMD 75 (428)
Q Consensus 23 ~ak~~~~-~~~~~Ai~~~~~ii~~~~---~~~--~-------------~~~k~--------l~~l~~l~~~~~~~~~l~e 75 (428)
.+|.++. ++|.+|++.|++++-..+ ++. + -.... ...++.++.+.|++++|.+
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHH
Confidence 3444443 469999999999994432 111 0 00011 1224788999999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHH
Q 014255 76 AYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRM 155 (428)
Q Consensus 76 ~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A 155 (428)
+|++.-... +.+..+++.+.. . +.+.+..+.+....+| .++|+.+++.|++++|
T Consensus 1071 IYkKa~~~~----------~A~~VLie~i~n-----l-------drAiE~Aervn~p~vW----sqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1071 IFRKFDVNT----------SAVQVLIEHIGN-----L-------DRAYEFAERCNEPAVW----SQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHcCCHH----------HHHHHHHHHHhh-----H-------HHHHHHHHhcCCHHHH----HHHHHHHHhCCCHHHH
Confidence 998864221 112222222211 2 2222222222333444 3778888888888888
Q ss_pred HHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-CC------------hh-h-
Q 014255 156 SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PH------------PR-I- 220 (428)
Q Consensus 156 ~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i-~~------------p~-~- 220 (428)
.+.+.+. ++ .+.+...+..+...|++..|-++|..|++..... .+ +. +
T Consensus 1125 IdsYiKA----------dD-------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1125 IDSYIKA----------DD-------PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HHHHHhc----------CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHH
Confidence 8777442 12 1233335667777888888888887776544211 00 00 0
Q ss_pred -------HHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 221 -------MGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 221 -------~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
.+.+ ..-|..+..+|+|..|..+|..+
T Consensus 1188 ~fI~~~n~ad~-~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1188 EFINGPNNAHI-QQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHhCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhh
Confidence 0111 23566777788888888777766
No 154
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=96.72 E-value=0.0042 Score=44.80 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=52.3
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
.+..+++.-+.+.++++|..||++.+++-..|-.+..+|+|.|-||-..+.|++++.
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred HHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 446777888999999999999999999999999999999999999999999998865
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.68 E-value=0.046 Score=42.73 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++..++.++...|+++++.+++.+.+... |+ +.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~-~~-------------------- 38 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-----------------------PT-NM-------------------- 38 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------Cc-cH--------------------
Confidence 35678889999999999999999998887643 22 00
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
.+...+|.++...|++++|.+.+.+........+ .+ .......+...+.++...|++.+|...+.++...
T Consensus 39 ----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 39 ----TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR--ED---YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST--TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc--hh---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1234788899999999999999999887754311 11 1233677788889999999999999999998765
No 156
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.67 E-value=0.0095 Score=47.10 Aligned_cols=90 Identities=9% Similarity=0.135 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|++.++...++.. ...++..++.+|...|+++++++++.+.+... |
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------------p 58 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----------------------P 58 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 45789999999999988432222 46889999999999999999999999887764 3
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhcc
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~ 167 (428)
+ +. .+...+|.++...|++++|.+.+++.....+
T Consensus 59 ~-~~------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 59 N-HQ------------------------ALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp T-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred C-ch------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3 00 1234788999999999999999999887754
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.66 E-value=0.029 Score=48.60 Aligned_cols=109 Identities=16% Similarity=0.005 Sum_probs=79.8
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCc----chhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD----DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~----d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+|..++..|+|++|.+.+.+........+... +.........++...+.++...|++.+|...+.++....
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455889999999999999999999988765422100 000012234677788889999999999999999997653
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
. . ........|.++...++|..|..+|..+...
T Consensus 119 p-----~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 K-----N-NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp T-----T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred c-----c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2 1 1223445588899999999999999998764
No 158
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.64 E-value=0.0041 Score=62.87 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|++.|++.++.+++. ..++..++.+|.+.|+++++++.+++.+...
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----------------------- 70 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELD----------------------- 70 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----------------------
T ss_pred HhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------
Confidence 4568999999999999987654 6788999999999999999999998877642
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (428)
|+ .. .....+|.+|...|++++|.+.+++......+ + ......+.
T Consensus 71 p~-~~------------------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-----~-----~~~~~~l~ 115 (477)
T 1wao_1 71 KK-YI------------------------KGYYRRAASNMALGKFRAALRDYETVVKVKPH-----D-----KDAKMKYQ 115 (477)
T ss_dssp TT-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----C-----TTHHHHHH
T ss_pred CC-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-----HHHHHHHH
Confidence 32 00 12347899999999999999999999887432 1 11222333
Q ss_pred HHHHHHhhcCHHHHHHHHHH
Q 014255 188 EIQMYTETKNNKKLKQLYQK 207 (428)
Q Consensus 188 e~~l~~~~~d~~ka~~~l~~ 207 (428)
.+..+...|++.+|...+++
T Consensus 116 ~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 34447778999999888873
No 159
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.61 E-value=0.033 Score=43.08 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=72.9
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
....+|..+...|++++|.+++.+....... + ...+...+.++...|++.+|...+.++...... +
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~ 76 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--N 76 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----c-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--c
Confidence 3457899999999999999999999877321 1 245566678899999999999999988654211 1
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+ ......|.++...++|..|...|.++...
T Consensus 77 ~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 77 A----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 23344577888899999999999988764
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.51 E-value=0.017 Score=46.33 Aligned_cols=86 Identities=14% Similarity=-0.012 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|+..|+++++.+|++ ..+...++.++...|+++++++.|++.+..-
T Consensus 29 ~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----------------------- 81 (121)
T 1hxi_A 29 KLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLD----------------------- 81 (121)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence 3567999999999999988764 5677889999999999999999988877753
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
|+ .. .....||.++...|++++|...+++....
T Consensus 82 P~-~~------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 82 PK-DI------------------------AVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp TT-CH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 00 01247888999999999999999888765
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.50 E-value=0.018 Score=43.83 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+++++|+..|.++++..+.. ..++..++.++...|+++++.+++.+.+...
T Consensus 18 ~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----------------------- 70 (112)
T 2kck_A 18 DAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVI----------------------- 70 (112)
T ss_dssp SSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----------------------
T ss_pred HhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------
Confidence 3567999999999999887643 4567889999999999999999888776642
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhh-ccHHHHHHHHHHHHhhcc
Q 014255 108 ASQ-NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQ 167 (428)
Q Consensus 108 ~~~-~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~-g~~~~A~~~l~el~~~~~ 167 (428)
|+. .. .+...+|.++... |++++|.+.+.++.....
T Consensus 71 ~~~~~~------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 71 EDEYNK------------------------DVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp CCTTCH------------------------HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred cccchH------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 110 00 1234788999999 999999999999987754
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.49 E-value=0.14 Score=40.67 Aligned_cols=102 Identities=12% Similarity=0.006 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
....+..++..+...|+++++++.|...+... |+ +.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------~~-~~-------------------- 43 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----------------------PL-VA-------------------- 43 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----------------------cC-cH--------------------
Confidence 36788899999999999999999998887753 22 00
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.....+|.++...|++++|...+.+.....+. ....+...+.++...|++.+|...+.++....
T Consensus 44 ----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 44 ----VYYTNRALCYLKMQQPEQALADCRRALELDGQ------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 12347889999999999999999998887321 23566677888999999999999999997665
Q ss_pred cc
Q 014255 213 SA 214 (428)
Q Consensus 213 ~~ 214 (428)
..
T Consensus 108 p~ 109 (137)
T 3q49_B 108 KE 109 (137)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 163
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.49 E-value=0.015 Score=44.81 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (428)
.+++++|++.|+++++.+|+. ..++..++.+|...|+++++++.|++.+... +..+......-+..++...
T Consensus 20 ~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 20 HDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA-REEGTQKDLSELQDAKLKA 90 (100)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-hcCCchhHHHHHHHHHHHc
Confidence 467999999999999988764 3578899999999999999999999999886 4444444444555555443
No 164
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0047 Score=47.62 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=57.1
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..+...|+|++|.+.+++.....+. + ...+...+.++...|++.+|...++++........++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ-----N-------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH
Confidence 457888999999999999999888877321 1 3456667788889999999999998887654332223
Q ss_pred hhHHHHHHhhhHhHHhhh
Q 014255 219 RIMGIIRECGGKMHMAER 236 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~ 236 (428)
..........|..+...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333344443333
No 165
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.45 E-value=0.26 Score=46.63 Aligned_cols=127 Identities=12% Similarity=0.061 Sum_probs=80.8
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHhhhcc
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK--NNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~--d~~ka~~~l~~a~~~~~~ 214 (428)
.....++.+++..|+.+.|.+.+++++..-. |..+...-+-+.+.++.+.+..| ++..|-.+|..... .
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~------d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~ 207 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTNAIE------DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---T 207 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---h
Confidence 3455888999999999999999999987721 00001123556777776666666 89999888887532 2
Q ss_pred CCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhh-----cchhHHHHHHHHHHHHHhhCC
Q 014255 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-----GNQRRIQCLKYLVLANMLMES 276 (428)
Q Consensus 215 i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~-----~~~~~~~~l~y~~L~~lL~~~ 276 (428)
.++...... .+. .++..|+|.+|...+......+.+. .+|.-..++..++.+....++
T Consensus 208 ~p~~~~~~l--Lln--~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 208 FPTWKTQLG--LLN--LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp SCSHHHHHH--HHH--HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcccHHH--HHH--HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 222111111 111 6888999999999987654443221 134445667777777765554
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.43 E-value=0.081 Score=40.35 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
..++..++..+...|+++++.+++...+... |+ +.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~-~~--------------------- 38 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----------------------PH-NH--------------------- 38 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH---------------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----------------------CC-cH---------------------
Confidence 4677788899999999999998888776643 22 00
Q ss_pred HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 134 l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
.....+|.++...|++++|.+.+.+.....+. ..+.+...+.++...|++.+|...+.++...
T Consensus 39 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 39 ---VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 11346778888889999999988888776321 1345566677888899999999988887654
No 167
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.35 E-value=0.022 Score=60.17 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (428)
.+++++|++.|.+.++.++++ ..++..++.+|...|+++++.+.|++.+... +........ +-.+......
T Consensus 446 ~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~--lg~~~~~~g~-- 516 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLA--LAATAELAGN-- 516 (681)
T ss_dssp HTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHH--HHHHHHHHTC--
T ss_pred cCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH--HHHHHHHcCC--
Confidence 467999999999999887654 5788899999999999999999999999876 543222221 1112222221
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 109 ~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
.+. .+.|+.+++. .. .+ ......+|.++...|++++|.+.+++....
T Consensus 517 ---~~~-~~~~~~al~~-~P-~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 517 ---TDE-HKFYQTVWST-ND-GV----ISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp ---CCT-TCHHHHHHHH-CT-TC----HHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ---hHH-HHHHHHHHHh-CC-ch----HHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 223 4556655442 11 11 123468999999999999999999887665
No 168
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.34 E-value=0.039 Score=56.55 Aligned_cols=154 Identities=8% Similarity=-0.032 Sum_probs=87.0
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHH
Q 014255 67 LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIW 146 (428)
Q Consensus 67 ~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~ 146 (428)
.|+++++.+.|++.+... +... .....+...+.... +.+...+.++.+++. ..+ .......+|.+|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~-----~~~~~lg~~~~~~g--~~~~A~~~~~~al~~---~p~---~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDF-----VAWLMLADAELGMG--DTTAGEMAVQRGLAL---HPG---HPEAVARLGRVR 67 (568)
T ss_dssp --------------------CCH-----HHHHHHHHHHHHHT--CHHHHHHHHHHHHTT---STT---CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHcC--CHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHH
Confidence 478888888888887764 4322 12222222222111 244455555555441 111 123456899999
Q ss_pred HhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHH
Q 014255 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRE 226 (428)
Q Consensus 147 ~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~ 226 (428)
...|++++|.+.+++......+ ..+.+...+.++...|++.+|...+.++...... ++ ....
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~ 129 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPE------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--EP----YITA 129 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHH
Confidence 9999999999999999887321 1356667778999999999999999999765321 12 2233
Q ss_pred hhhHhHHhh---hcHHHHHHHHHHHHHhh
Q 014255 227 CGGKMHMAE---RQWADAATDFFEAFKNY 252 (428)
Q Consensus 227 ~~g~~~~~~---~~y~~A~~~f~ea~~~~ 252 (428)
..|.++... +++.+|...|.++....
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 446777778 99999999999987643
No 169
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.33 E-value=0.065 Score=47.00 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=71.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHH----------------HHHHHHhhcCHHHHHH
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI----------------EIQMYTETKNNKKLKQ 203 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~----------------e~~l~~~~~d~~ka~~ 203 (428)
+..|..++..|+|++|...+++.....++ ..+.+.. .+.++...|++.+|..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 46788889999999999999998877321 1233334 6788999999999999
Q ss_pred HHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 204 LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 204 ~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
.++++....+. ++ ..+...|.++...|+|.+|...|-.+...
T Consensus 76 ~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 76 FYKELLQKAPN--NV----DCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHCTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999765322 11 23344588899999999999999999764
No 170
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.33 E-value=0.092 Score=41.20 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++..++..+...|+++++.+++.+.+... +.. ......+...+.... +.+.....++.+++. ..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~---~~~- 82 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKD-----AKLYSNRAACYTKLL--EFQLALKDCEECIQL---EPT- 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTC-----HHHHHHHHHHHTTTT--CHHHHHHHHHHHHHH---CTT-
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc-----HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh---CCC-
Confidence 46666777777777777777777777666543 221 122223333332211 233344444444331 111
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
.......+|.++...|++++|.+.+.+.....
T Consensus 83 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 83 --FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 11345588999999999999999999988774
No 171
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.33 E-value=0.042 Score=54.77 Aligned_cols=102 Identities=9% Similarity=-0.021 Sum_probs=79.1
Q ss_pred hhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---ChhhHHHH
Q 014255 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---HPRIMGII 224 (428)
Q Consensus 148 ~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~---~p~~~~~i 224 (428)
..|+|++|.+++++......+.-|.+. ...+..+-..+.+|..+|+|.+|..++.++..+...++ ||.+-..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~H----p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSN----VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhc----hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 458899999999998876655444332 45677888888999999999999999999987766544 46554433
Q ss_pred HHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 225 RECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 225 ~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
. --|.++..+|+|.+|...|-+|+..+..
T Consensus 386 ~-nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 386 L-KLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 3 3478899999999999999999876643
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.23 E-value=0.065 Score=43.09 Aligned_cols=103 Identities=10% Similarity=0.086 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
....+..++..+...|++++++++|++.+... |+ . .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~--~----~--------------- 62 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----------------------AT--P----Q--------------- 62 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----------------------CC--H----H---------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----------------------cc--c----h---------------
Confidence 46788899999999999999999998876643 22 1 0
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
........+|.++...|++++|.+.+.+....... ....+...+.++...|++.+|...+.++....
T Consensus 63 -~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 63 -DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 01123457889999999999999999988877321 13556677788999999999999999887653
No 173
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.14 E-value=0.89 Score=42.91 Aligned_cols=166 Identities=9% Similarity=0.036 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHhc
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA---VTRNYSEKCINNIMDFVS 105 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~---~~k~~~~k~v~~il~~~~ 105 (428)
.+++++|++.+++.++.++. .-...+.-.+++++.+.|+.+.+.+.++.+.... +. -.-.-..-+...-+....
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~--~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-~d~~~~~d~~l~~Laea~v~l~~ 189 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEA--EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI-EDTVSGDNEMILNLAESYIKFAT 189 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCC--cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-ccccccchHHHHHHHHHHHHHHh
Confidence 46788999999988776541 1136777888899999999999998888876653 20 001111111112122222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCC--cchhhhhhHHH
Q 014255 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT--DDQKKGSQLLE 183 (428)
Q Consensus 106 ~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~--~d~~~~~~~~e 183 (428)
.. + ...-.-.+|+...+ ..++ |-.....+. .+...|+|++|.+.|+.+.+.-++..+- .+ ....+
T Consensus 190 g~-~-~~q~A~~~f~El~~---~~p~---~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~----p~~~~ 256 (310)
T 3mv2_B 190 NK-E-TATSNFYYYEELSQ---TFPT---WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV----LYKPT 256 (310)
T ss_dssp TC-S-TTTHHHHHHHHHHT---TSCS---HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH----SSHHH
T ss_pred CC-c-cHHHHHHHHHHHHH---hCCC---cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCC----CCCHH
Confidence 21 1 12223334444322 1111 222222233 7889999999999998766542110000 01 12356
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 184 VYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 184 ~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.+...+.++..+|+ .|..++.+++...
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 66677777778887 7788888777553
No 174
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.09 E-value=0.14 Score=39.32 Aligned_cols=99 Identities=19% Similarity=0.313 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
...++..++.++...|+++++.+++...+... |+ ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~-~~-------------------- 43 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------PN-NA-------------------- 43 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------------cC-cH--------------------
Confidence 35778889999999999999999988776542 22 00
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
.....+|.++...|++++|..++.+....... + ...+...+.++...|++.+|...+.++...
T Consensus 44 ----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 ----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----c-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 01236788888999999999999888776321 1 234556678888999999999999888654
No 175
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.09 E-value=0.15 Score=50.56 Aligned_cols=106 Identities=9% Similarity=-0.003 Sum_probs=82.0
Q ss_pred HHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---Chhh
Q 014255 144 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---HPRI 220 (428)
Q Consensus 144 ~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~---~p~~ 220 (428)
.-+...|+|++|.+++++......+.-|.+. ...+..+-..+.+|..+|++.+|..++.++..+...++ ||.+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h----~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDIN----IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccc----hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 3355779999999999999877655444332 45678888888999999999999999999987766543 4654
Q ss_pred HHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh
Q 014255 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (428)
-..+ .--|.++..+|+|.+|...|-+|+..+..
T Consensus 371 a~~l-~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 371 GVQV-MKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4333 33478899999999999999999876654
No 176
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.07 E-value=0.058 Score=45.50 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=73.9
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHH-HHhhcCH--HHHHHHHHHHHhhhcc
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKNN--KKLKQLYQKALAIKSA 214 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l-~~~~~d~--~ka~~~l~~a~~~~~~ 214 (428)
....+|.+|...|++++|...+.+....... + ...+...+.+ +...|++ .+|...+.++......
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGE-----N-------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-----C-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 3458899999999999999999999887432 1 2445555666 7788998 9999999998765321
Q ss_pred CCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 215 i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
++ ..+...|.++...|+|..|...|..++...
T Consensus 114 --~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 114 --EI----TALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp --CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred --cH----HHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 11 234455888899999999999999997654
No 177
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.06 E-value=0.038 Score=41.66 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFK-ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k-~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (428)
.+++++|++.|+++++.++++ .. ++..++.+|...|+++++.+.|++.+... +.......-..+..++..+..
T Consensus 13 ~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~a~~~~~~ 86 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQARKMVMDILNFYNK 86 (99)
T ss_dssp HTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 467999999999999987754 34 88899999999999999999999999886 554443333445555555543
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.04 E-value=0.058 Score=52.43 Aligned_cols=108 Identities=11% Similarity=0.020 Sum_probs=77.9
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCC--Ccc--hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG--TDD--QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~--~~d--~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (428)
....+|..++..|+|++|.+.+++........+. ..+ ..........+...+.+|..+|++.+|..+++++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3458899999999999999999888874321000 000 00023456788888899999999999999999997642
Q ss_pred cCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 214 ~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
|. ....+...|.++...++|.+|..+|..+...
T Consensus 304 ----p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 ----PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp ----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22 1223444588889999999999999998764
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.01 E-value=0.021 Score=54.78 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ 132 (428)
....+..++..+++.|++++++..|.+.+... +... .+.. .+ ...+ ....
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~-------------~~~~-~~----~~~~----~~~~------- 227 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GDDF-------------MFQL-YG----KYQD----MALA------- 227 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CHHH-------------HHTC-CH----HHHH----HHHH-------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccch-------------hhhh-cc----cHHH----HHHH-------
Confidence 35678889999999999999999999988875 3211 0110 00 0001 1111
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
+...+..++|..|...|+|++|...+++....... ....+...+.+|..+|++.+|...+.++..+.
T Consensus 228 -l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 228 -VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK------------NPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp -HHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 11135668999999999999999999999887321 23566777889999999999999999886543
Q ss_pred ccCCChhhHHHHHHhhhHh-HHhhhcHHHHHHHHHHHHHh
Q 014255 213 SAIPHPRIMGIIRECGGKM-HMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~-~~~~~~y~~A~~~f~ea~~~ 251 (428)
.. ++.... . .+.+ ....+.+..+...|..+|..
T Consensus 295 p~--~~~a~~---~-L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 295 PD--DKAIRR---E-LRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------------------------------
T ss_pred CC--CHHHHH---H-HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 22 111111 1 1222 23345556666666666553
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.00 E-value=0.16 Score=43.15 Aligned_cols=112 Identities=11% Similarity=-0.045 Sum_probs=79.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc-C-CC
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-I-PH 217 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~-i-~~ 217 (428)
..+|..++..|+|++|...+.+.....++.+......-.......+...+..+..+|++.+|...+++|..+-+. . .+
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 478899999999999999999998886652211100000122347888888999999999999999999876111 1 12
Q ss_pred hhhHHHHH----HhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 218 PRIMGIIR----ECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 218 p~~~~~i~----~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
|. .+..+ .-.|..+...++|.+|..+|-.+.+--
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 32 12222 445888889999999999999997643
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.97 E-value=0.031 Score=52.34 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=72.6
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~ 216 (428)
.+.+.+|.++.+.|+|++|.+.+..+...- .+ .+ .....+.+++..++++.|..+++.+.+ .+
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~------p~------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~ 165 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAG------SE------HL-VAWMKAVVYGAAERWTDVIDQVKSAGK----WP 165 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT------CH------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGG----CS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------Cc------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhc----cC
Confidence 345578889999999999999888776531 11 12 445556789999999999999874422 23
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
+|.....+..+.|..+...|++.+|..+|-++..
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5555556777889999999999999999998854
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.91 E-value=0.051 Score=50.40 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=75.7
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p 218 (428)
...+|..+...|+|++|.+.+.+....... ....+...+.++...|++.+|...++++..+. |
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p 69 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL------------VAVYYTNRALCYLKMQQPEQALADCRRALELD-----G 69 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-----T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C
Confidence 457899999999999999999999887321 13566777889999999999999999886542 2
Q ss_pred hhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhh
Q 014255 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (428)
.. .......|.++...|+|.+|...|..+.....
T Consensus 70 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 70 QS-VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 21 12334458889999999999999999976543
No 183
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.75 E-value=0.47 Score=41.55 Aligned_cols=151 Identities=12% Similarity=0.026 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG----KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~----~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (428)
..|+++|++.|++..+.. ...++..++.+|.. + ++++++++|++.... . .......+...+
T Consensus 31 ~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---g-----~~~a~~~Lg~~y 95 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---G-----SKSGEIVLARVL 95 (212)
T ss_dssp HTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---T-----CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---C-----CHHHHHHHHHHH
Confidence 468999999999997653 25788899999998 7 999999999988553 1 123444455555
Q ss_pred cCCC--CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHh----hccHHHHHHHHHHHHhhccCCCCCcchhhh
Q 014255 105 SGSA--SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (428)
Q Consensus 105 ~~~~--~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~----~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (428)
.... ..+.+...++++.+.+. .+..-.......||.+|.. .+++++|..+++..... .. +.
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~-----~~--- 162 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR-----TG--- 162 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC-----TT---
T ss_pred HcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC-----CH---
Confidence 4310 12344455555554331 1111224556799999998 88999999999998766 11 10
Q ss_pred hhHHHHHHHHHHHHHhh------cCHHHHHHHHHHHHhh
Q 014255 179 SQLLEVYAIEIQMYTET------KNNKKLKQLYQKALAI 211 (428)
Q Consensus 179 ~~~~e~~l~e~~l~~~~------~d~~ka~~~l~~a~~~ 211 (428)
..+.....+|... +|+.+|..++.+|...
T Consensus 163 ----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 163 ----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp ----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 1223334455432 3899999999988643
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.67 E-value=0.069 Score=41.59 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~ 87 (428)
.+++++|++.|+++++.+++. ..++..++.+|...|+++++.+.|...+... +.
T Consensus 32 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~ 85 (115)
T 2kat_A 32 HEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQAWESGLAAA-QS 85 (115)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH
T ss_pred ccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cc
Confidence 467899999999999887654 4567889999999999999999999988876 44
No 185
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.17 Score=47.04 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=95.0
Q ss_pred HHHhhhHhHHhhhcHHHHHHHHHHHHHhhhh-----hcchhHHHHHHHHHHHHHhhCCCCCCCCc------ccccccCCC
Q 014255 224 IRECGGKMHMAERQWADAATDFFEAFKNYDE-----AGNQRRIQCLKYLVLANMLMESEVNPFDG------QEAKPYKND 292 (428)
Q Consensus 224 i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~-----~~~~~~~~~l~y~~L~~lL~~~~~~~~~~------~~~~~~~~~ 292 (428)
+++.++++.+..+|+.+=-+++..-..-|.. ..++....++.|-+|.-+..++..+ |.. .......++
T Consensus 61 v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~e-fh~~Le~L~~~~~~~~~d 139 (274)
T 4b4t_T 61 ILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTK-FHSELQYLDKHIKNLEDD 139 (274)
T ss_dssp CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTH-HHHHHHSSSCSSSTTTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHH-HHHHHHhcchhhHhHhcC
Confidence 3455555666666665544444443333321 1234555677777776654443211 111 011112345
Q ss_pred cchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCC-hHH
Q 014255 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVP-EKD 371 (428)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~-~~~ 371 (428)
|.+..-..|.+++..|++.+|.++...... . .+...-.++.+..++|..++..+.+.|.+|+++++++.|+++ +++
T Consensus 140 ~~Ik~al~le~al~eGnY~kff~l~~~~~~--p-~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e 216 (274)
T 4b4t_T 140 SLLSYPIKLDRWLMEGSYQKAWDLLQSGSQ--N-ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKE 216 (274)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHTCTT--C-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhcCCC--C-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHH
Confidence 667666688999999999999887655211 0 122344567789999999999999999999999999999994 667
Q ss_pred HHHHHHH
Q 014255 372 VEQLLVS 378 (428)
Q Consensus 372 vE~~l~~ 378 (428)
+...+-+
T Consensus 217 ~~~F~~~ 223 (274)
T 4b4t_T 217 TEKFALE 223 (274)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766655
No 186
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.63 E-value=0.38 Score=48.51 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=13.3
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
.++.++...|++++|.+++......
T Consensus 361 ~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 361 QYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4455555555555555555555443
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.52 E-value=0.082 Score=40.41 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=50.8
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (428)
...+|.+|...|+|++|.+.+++....-+. ....+...+.+|...|++.+|...+.++..+...
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETDPD------------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 458899999999999999999998887431 1246666778899999999999999988766443
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.50 E-value=0.54 Score=39.81 Aligned_cols=112 Identities=11% Similarity=0.165 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh-------hhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHH
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-------RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKAL 126 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~-------k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l 126 (428)
.-.+.+.+..+++.|+++++++.|++.+.+. |..+ ...-+.+..+....+.... +.+.....++.+++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--r~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLR--SFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhh
Confidence 4566788999999999999999999999987 6521 1111123333333333322 3556777777777743
Q ss_pred HH-----hhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccC
Q 014255 127 EE-----AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (428)
Q Consensus 127 ~~-----~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~ 168 (428)
+. ..+.+.|++...++|..+...|++++|...+++.....++
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 22 1344566666689999999999999999999999988654
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.45 E-value=0.1 Score=52.11 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=80.5
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcc---hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d---~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (428)
.....+|..++..|+|++|...+.+........+...+ ..........+...+.+|..+|++.+|...++++..+..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34558899999999999999999999887543211000 000123467788888999999999999999999987632
Q ss_pred cCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 214 ~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
. . ...+...|.++...++|.+|..+|..+...
T Consensus 349 ~----~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 A----N--EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp T----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred c----c--HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2 1 223344588899999999999999999763
No 190
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.21 E-value=0.25 Score=45.56 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
..++..++..++..|+++++++.|.+.+... |+ +.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~--------------------- 38 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----------------------PL-VA--------------------- 38 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------SC-CH---------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------Cc-cH---------------------
Confidence 4678889999999999999999998887753 32 00
Q ss_pred HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014255 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (428)
Q Consensus 134 l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (428)
.....+|.+|...|++++|.+.+.+...... + ....+...+.++...|++.+|...+.++.....
T Consensus 39 ---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 39 ---VYYTNRALCYLKMQQPEQALADCRRALELDG------Q------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT------T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 0123677788888888888888877766521 1 134555666778888888888888888765543
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.10 E-value=0.099 Score=40.97 Aligned_cols=90 Identities=9% Similarity=0.052 Sum_probs=64.9
Q ss_pred hhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHh
Q 014255 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (428)
Q Consensus 148 ~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~ 227 (428)
..|++++|.+.+++...... ++ ......+...+.++...|++.+|...+.++...... + ......
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-----~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-----QG----KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--H----QALRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-----CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC-----CC----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c----hHHHHH
Confidence 35889999999998877521 12 234577778889999999999999999999765322 1 234445
Q ss_pred hhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 228 GGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 228 ~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
.|.++...|+|.+|...|..+....
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6888999999999999999997643
No 192
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.00 E-value=1.3 Score=50.19 Aligned_cols=168 Identities=12% Similarity=0.199 Sum_probs=89.9
Q ss_pred hhcccC-CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh-------hhhhHHH
Q 014255 23 LEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-------VTRNYSE 94 (428)
Q Consensus 23 ~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-------~~k~~~~ 94 (428)
-||... .+++++|++.|.+. ++ ...+..++..+.+.|+|++++++|..-++..+.. ..-++..
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA-----dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA-----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 344433 34578888888663 11 4566778999999999999999998766643111 0011111
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh----hhhhHHH--HHhHHHHHHHHhhccHHHHHHHHHHHHhh---
Q 014255 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA----KNERLWF--KTNLKLCKIWFDMGEYGRMSKILKELHKS--- 165 (428)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~----~~~kl~l--r~~~~La~l~~~~g~~~~A~~~l~el~~~--- 165 (428)
+ +..+-+.+.. ++ . ..++.+. +.+... .....|. ....++|..|...|+|++|.+...+....
T Consensus 1182 r-leele~fI~~-~n--~---ad~~~iG-d~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A 1182 R-LAELEEFING-PN--N---AHIQQVG-DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred C-HHHHHHHHhC-CC--H---HHHHHHH-HHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence 1 1222222321 22 1 1222222 111110 0111222 33458899999999999998887665322
Q ss_pred ------ccCCCCCcc---hhhhh----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 166 ------CQREDGTDD---QKKGS----QLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 166 ------~~~~~~~~d---~~~~~----~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
|-+. .+ ..... ...+.+-..+++|...|.+.+|-.+++.+..
T Consensus 1254 kev~~acve~---~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1254 KEVCFACVDG---KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHhhh---hHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 0000 00 00000 0112333456788999999999999988854
No 193
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=94.77 E-value=0.71 Score=38.76 Aligned_cols=164 Identities=12% Similarity=0.078 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~ 135 (428)
.+...+..+...|+++++...|++.+... |..... ...+...+.... +.+.....++.+++ ... ...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a-----~~~la~~~~~~g--~~~~A~~~~~~a~~---~~p-~~~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDV-----KLAKADCLLETK--QFELAQELLATIPL---EYQ-DNSY 75 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHH-----HHHHHHHHHHTT--CHHHHHHHHTTCCG---GGC-CHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHH-----HHHHHHHHHHCC--CHHHHHHHHHHhhh---ccC-ChHH
Confidence 34567889999999999999999888765 542221 112222221111 12223332222211 001 1111
Q ss_pred HHHhHHHHHHHH-hhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014255 136 FKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 136 lr~~~~La~l~~-~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (428)
...++.+.. ..++..+|.+.+++.....++ ..+.+...+.++...|++.+|...+.++......
T Consensus 76 ---~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 76 ---KSLIAKLELHQQAAESPELKRLEQELAANPD------------NFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp ---HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred ---HHHHHHHHHHhhcccchHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 111222222 223334466666666655221 1355566677888889999998888887654322
Q ss_pred CCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 215 i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
..++ ..+...|.++...|++.+|...|..++.
T Consensus 141 ~~~~----~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 141 AQDG----EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTT----HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred cChH----HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 1111 1223335666677788888877776643
No 194
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.60 E-value=1.4 Score=40.55 Aligned_cols=31 Identities=6% Similarity=0.054 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
...+-.++..+...|+++++.+.|++.+...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 147 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS 147 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 4566788999999999999999999988865
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.08 Score=40.35 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
..+++++|++.|.+.++.+|++ ..++..++.+|...|+++++++.+++.+...
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4568999999999999987754 5678899999999999999999999887764
No 196
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.43 E-value=0.21 Score=38.61 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=53.9
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
+..||.+++..|+|..|...+++........+.. .....+++...+..+.++|++.+|..++.++.++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-----~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-----TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-----SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC-----cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 5689999999999999999999988765432110 1234577777788999999999999999998765
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.39 E-value=0.31 Score=37.70 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=48.5
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
....+|.+|...|++++|.+.+++.....+. ..+.+...+.++...|++.+|...+.++....
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPT------------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3457889999999999999999888877321 13455666788888999999999998886654
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.36 E-value=0.3 Score=36.41 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=49.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE-VYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e-~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
+.+|..+...|+|++|.+.+++....... + .. .+...+.++...|++.+|...+.++....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV-----G-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-----T-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----c-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 47788999999999999999998887321 1 24 66677888999999999999999987653
No 199
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.36 E-value=1 Score=45.58 Aligned_cols=172 Identities=12% Similarity=0.093 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhH
Q 014255 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (428)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl 134 (428)
..+..++..|.+.|+.++|++++..+... + +.+ .....+.++..+..............++.+.+.++......+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~--G-v~p--d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~ 101 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN--G-VQL--SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV 101 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--T-CCC--CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc--C-CCC--CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC
Confidence 34677889999999999999999998764 2 222 223466677776542110000000111222222221111110
Q ss_pred --HHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 135 --WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 135 --~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
-..+..-|...|...|++++|.+++.++...-..| + +..|-..+..|.+.|+..+|..+++.-...
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P----d-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~- 169 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP----R-------LRSYGPALFGFCRKGDADKAYEVDAHMVES- 169 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----c-------cceehHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 01234467888999999999999999998763322 2 234555667888999999999998875432
Q ss_pred ccCCChhh-HHHHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 213 SAIPHPRI-MGIIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 213 ~~i~~p~~-~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
.-.++... ...+ ..+...|++.+|.+.|.+-
T Consensus 170 G~~Pd~~ty~~Li-----~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 170 EVVPEEPELAALL-----KVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp TCCCCHHHHHHHH-----HHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH-----HHHhhCCCHHHHHHHHHHH
Confidence 11223222 2222 2345678888888887765
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.08 E-value=0.17 Score=36.87 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.+++++|++.|.+.++..+++ ..++..++.++...|+++++.+++.+.+...
T Consensus 22 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 467999999999999887654 4677899999999999999999999998864
No 201
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.23 Score=48.74 Aligned_cols=135 Identities=8% Similarity=0.108 Sum_probs=91.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh---------
Q 014255 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK--------- 130 (428)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~--------- 130 (428)
+.+++..-+..+.++++|..++..|+..+++-+..+++..+.+...+ .+...++++.+...+....
T Consensus 45 L~~~~~~~~~~~~~~~ly~~fi~~f~~kin~L~lv~~~~~~~~~~~d-----~~~al~~L~~~~~~~~~~~~~~~~~~~~ 119 (393)
T 4b4t_O 45 LTKFFDDAKSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKD-----FDESLKYLDDLKAQFQELDSKKQRNNGS 119 (393)
T ss_dssp THHHHCCCSSCCCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHTTC-----HHHHHHHHHHHTTTSHHHHSSCCCCCCS
T ss_pred HHHHHhChhcchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHhhhhhhhhcccch
Confidence 34444444566677899999999998888998888887666665532 3334455544433322110
Q ss_pred --hhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHH
Q 014255 131 --NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203 (428)
Q Consensus 131 --~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~ 203 (428)
...-.+.+...++++|+..|+.++|.+++.++.......++. + ......+|-..+.+|...+++..+..
T Consensus 120 ~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~-~---~~v~~~~y~~~~~~~~~~~~~a~~y~ 190 (393)
T 4b4t_O 120 KDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI-P---LRITNSFYSTNSQYFKFKNDFNSFYY 190 (393)
T ss_dssp SSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS-S---SHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc-c---HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 011233455589999999999999999999999887665444 2 25667788888888888888877543
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.88 E-value=0.18 Score=38.50 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.++|...|++.++.+|++ .+++..++.++++.|+|++++++++.++...
T Consensus 25 ~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 689999999999998765 7899999999999999999999999998764
No 203
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.81 E-value=4.3 Score=39.96 Aligned_cols=174 Identities=8% Similarity=0.085 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG---KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~---~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
+.+.|...++.....++ .+...++.+|...| ++++++++|++....- +. . +.....+...+...
T Consensus 160 ~~~~a~~~~~~a~~~~~-------~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~--~---a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTD-------ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TV--T---AQRVDSVARVLGDA 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCT-------THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CS--C---HHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CH--H---HHHHHHHHHHHhCC
Confidence 44555555555533322 27788999999999 8999999988877652 21 1 11122333333321
Q ss_pred --CCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHH-H--HhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHH
Q 014255 108 --ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-W--FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (428)
Q Consensus 108 --~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l-~--~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~ 182 (428)
...+.+....+++.+. . ++ ......||.+ + ...|++++|.+++++.... | + .
T Consensus 227 ~~~~~d~~~A~~~~~~aa---~--g~----~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g--~-------~ 283 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA---P--GY----PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D--Q-------P 283 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG---G--GS----THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T--C-------H
T ss_pred CCCCCCHHHHHHHHHHHc---C--CC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C--C-------H
Confidence 1123445555555543 1 11 1334588888 4 4678999999999987654 1 1 1
Q ss_pred HHHHHHHHHHHhhc-----CHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHh----hhcHHHHHHHHHHHHH
Q 014255 183 EVYAIEIQMYTETK-----NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (428)
Q Consensus 183 e~~l~e~~l~~~~~-----d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~----~~~y~~A~~~f~ea~~ 250 (428)
+.+.....+|. .| |+.+|..++.+|. -.+|. +.+. -|.++.. .+|+..|...|..+.+
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~--A~~~--Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVA--ADYY--LGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHH--HHHH--HHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHH--HHHH--HHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 22333344555 55 9999999998765 11232 2121 1444443 5699999999998854
No 204
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=93.76 E-value=0.18 Score=48.01 Aligned_cols=107 Identities=11% Similarity=-0.090 Sum_probs=75.3
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCC-----CCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQRED-----GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~-----~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
....+|..++..|+|++|...+.+......... +..+.....+....+...+.++..+|++.+|...++++....
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345889999999999999999999877643100 000000001122467778889999999999999999997653
Q ss_pred ccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHH
Q 014255 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (428)
Q Consensus 213 ~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (428)
|. ....+...|.++...++|..|..+|..+..
T Consensus 261 -----p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 261 -----EK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp -----TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred -----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 122344558889999999999999999865
No 205
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.75 E-value=0.11 Score=52.14 Aligned_cols=94 Identities=13% Similarity=0.027 Sum_probs=74.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~ 219 (428)
..+|..+...|+|++|.+.+++....... ....+...+.++..+|++.+|...+++|..+. |.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----p~ 72 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPS------------NAIYYGNRSLAYLRTECYGYALGDATRAIELD-----KK 72 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence 46778888999999999999999887321 24566777889999999999999999997652 22
Q ss_pred hHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
. ...+...|.++...++|.+|...|.++.+.
T Consensus 73 ~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 73 Y-IKGYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 223344588889999999999999999764
No 206
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=93.73 E-value=0.17 Score=45.62 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=71.0
Q ss_pred CCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhC-CCh
Q 014255 291 NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPE 369 (428)
Q Consensus 291 ~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~-l~~ 369 (428)
.+|.+..+..|.+...+|++..|-+.++. ++-+...+..|.+.+|......+...|++|+++.+++.+| ++.
T Consensus 95 ~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-------~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~ 167 (226)
T 1rz4_A 95 EERPIRQILYLGDLLETCHFQAFWQALDE-------NMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSD 167 (226)
T ss_dssp TSTTHHHHHHHHHHHHTTCHHHHHHHSCT-------TCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCH
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHHHHhc-------ChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCH
Confidence 45788888899999999999998876543 3444444555778888888888889999999999999995 899
Q ss_pred HHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 370 KDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 370 ~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
++++.++.+- | =++| .+|.|.+
T Consensus 168 ~el~~fi~~~---G---W~vd-~~g~I~~ 189 (226)
T 1rz4_A 168 SQLKVWMSKY---G---WSAD-ESGQIFI 189 (226)
T ss_dssp HHHHHHHHHH---T---CEEC-C--CEEC
T ss_pred HHHHHHHHHC---C---CEEC-CCccEEe
Confidence 9999888872 3 2455 5566655
No 207
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.49 E-value=0.091 Score=40.79 Aligned_cols=72 Identities=14% Similarity=0.037 Sum_probs=56.6
Q ss_pred chhhHHHHHHhhcccC-CCCHHHHHHHHHHhhcCCCc---cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 13 FTVSRVLCSILEKGLV-ETDPEGALAGFAEVVAMEPE---KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 13 ~~~~~~~~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~---~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
|.+++..|+.-|.... ++++..|+.-|+..++..++ .+.....++.+++..|++.|+++.++++++..+.+-
T Consensus 1 ~~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 1 MFLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4567777888777664 45799999999999875321 122346889999999999999999999999998875
No 208
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.30 E-value=3 Score=41.12 Aligned_cols=92 Identities=7% Similarity=0.013 Sum_probs=59.6
Q ss_pred HhHHHHHHHHhhc---cHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHh
Q 014255 138 TNLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET----KNNKKLKQLYQKALA 210 (428)
Q Consensus 138 ~~~~La~l~~~~g---~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~----~d~~ka~~~l~~a~~ 210 (428)
....||.+|...| ++.+|.+.++.....-. .+ ...+.....+|... +|+.+|..++.++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-----~~-------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-----VT-------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----SC-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-----HH-------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 4568999999999 89999999888876622 11 12222333455443 68999999998875
Q ss_pred hhccCCChhhHHHHHHhhhHh-H--HhhhcHHHHHHHHHHHHH
Q 014255 211 IKSAIPHPRIMGIIRECGGKM-H--MAERQWADAATDFFEAFK 250 (428)
Q Consensus 211 ~~~~i~~p~~~~~i~~~~g~~-~--~~~~~y~~A~~~f~ea~~ 250 (428)
.. +|..+ +. .|.+ + ...+|+.+|..+|..+.+
T Consensus 245 --~g--~~~a~--~~--Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 245 --PG--YPASW--VS--LAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp --GG--STHHH--HH--HHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred --CC--CHHHH--HH--HHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 11 22221 11 1332 2 358899999999998854
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.28 E-value=0.47 Score=34.32 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=47.3
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 138 ~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
....+|..+...|++++|.+.+.+.....+. + ...+...+.++...|++.+|...+.++...
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----C-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3457888899999999999998888876321 1 245556677888899999999888888655
No 210
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.12 E-value=6.8 Score=38.12 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHhhcCCC-ccchhhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 31 DPEGALAGFAEVVAMEP-EKAEWGFK--ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~-~~~~~~~k--~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
..+.-++...+.++-.. ++.-| .| .=..++.+|.+.|+|.++++.+..++...+..-.+...-++.-.-+..+...
T Consensus 74 ~~~~~~~~~~~~~~~a~~~~r~f-lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~ 152 (394)
T 3txn_A 74 GTGIEVQLCKDCIEWAKQEKRTF-LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 152 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence 34444555555554322 23444 33 2246899999999999999999999998733223555555555555555543
Q ss_pred CCCChhHHHHHHHHHHHHHHHh-hhhhHHHHHhHHHHHHHH-hhccHHHHHHHHHHHHh
Q 014255 108 ASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWF-DMGEYGRMSKILKELHK 164 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~-~~~kl~lr~~~~La~l~~-~~g~~~~A~~~l~el~~ 164 (428)
. |...+...|..++...... ++.++-.++..--|.++. ..++|.+|....-+.-.
T Consensus 153 ~--n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 153 S--NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp T--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 3 4777888888887765543 455566677777888899 89999999876666543
No 211
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.80 E-value=3.9 Score=41.13 Aligned_cols=157 Identities=11% Similarity=0.029 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGK---------YKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~---------~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (428)
+.+++++|++.|.+..+..-.- ....+..++..|...+. .+.+.+++..+... + +.+. ....+
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~p---d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--G-~~Pd--~~tyn 109 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQL---SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--K-VVPN--EATFT 109 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--T-CCCC--HHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--C-CCCC--HHHHH
Confidence 4568999999999987653211 14556677778876554 57788888777653 2 2222 23456
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhh
Q 014255 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (428)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (428)
.++..+....+ .+...++++...+ . + -.--..+..-+..-|...|+.++|.+++.++...--.| +
T Consensus 110 ~lI~~~~~~g~--~~~A~~l~~~M~~---~-g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P----d---- 174 (501)
T 4g26_A 110 NGARLAVAKDD--PEMAFDMVKQMKA---F-G-IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP----E---- 174 (501)
T ss_dssp HHHHHHHHHTC--HHHHHHHHHHHHH---T-T-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC----C----
T ss_pred HHHHHHHhcCC--HHHHHHHHHHHHH---c-C-CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----C----
Confidence 67776665222 4334444433322 1 0 00011334467778889999999999999998763332 2
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 179 ~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
...|...+..|.+.|+..+|..++.+-+.
T Consensus 175 ---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 175 ---EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 23555667889999999999999887653
No 212
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.32 E-value=0.29 Score=36.18 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=38.5
Q ss_pred HHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 344 ~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
..|+.+++...++++++||+.|++|+.-|...|..+...|.|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456777778999999999999999999999999999999873
No 213
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.06 E-value=5.4 Score=39.22 Aligned_cols=108 Identities=9% Similarity=0.024 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014255 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (428)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~k 133 (428)
.++...++++|.+.|++++|.+.|..++..- .. ++.+++ ++-.++...-...+ ...+...++.+...+...++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~-~~~kid-~~l~~irl~l~~~d--~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKA-IS-TGAKID-VMLTIARLGFFYND--QLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TC-CCSHHH-HHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC-hHHHHH-HHHHHHHHHHHhcc--HHHHHHHHHHHHHhhhcCCCHH
Confidence 6788999999999999999999999998875 22 344443 33333333222123 6667777887776665544444
Q ss_pred HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhc
Q 014255 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (428)
Q Consensus 134 l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~ 166 (428)
+..++..--|.++...++|.+|.+.+-++-...
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 444444456677778899999998887775543
No 214
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.06 E-value=0.61 Score=34.23 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=38.9
Q ss_pred HHHHhhcccc---ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEec
Q 014255 345 VLLKLIKPYT---RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 345 ~l~~~~~pYs---~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
.|+.+++.-. +++..+||+.+|++...|...|-+|..+|.|...-+.
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~ 67 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT 67 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSS
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCC
Confidence 3445555444 8999999999999999999999999999999776443
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.30 E-value=0.47 Score=39.84 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHhhcCC-CccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 31 DPEGALAGFAEVVAME-PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~-~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
+.+++|..|+++++.+ |+ -...++.+++-.|++.|+|+++.+++..++..-
T Consensus 50 ~~~~gI~lLe~ll~~~~p~---~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4569999999999876 32 246899999999999999999999999999974
No 216
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=90.15 E-value=0.47 Score=35.79 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=39.4
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEE
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ 388 (428)
.|+.+++...++++++||+.|++|+.-|...|..+...|.|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45677777899999999999999999999999999999998644
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=89.60 E-value=22 Score=37.16 Aligned_cols=196 Identities=10% Similarity=0.052 Sum_probs=102.1
Q ss_pred CHHHHH-HHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh-------hhh---------HH
Q 014255 31 DPEGAL-AGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV-------TRN---------YS 93 (428)
Q Consensus 31 ~~~~Ai-~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~-------~k~---------~~ 93 (428)
+.++|. +.|+..+...|.. ....-+.+.+....|+++.+.++|..++..+.... +.+ ..
T Consensus 358 ~~~~a~r~il~rAi~~~P~s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp CCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 345676 7777776654432 23335567888899999999999999988641111 100 11
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhc-cHHHHHHHHHHHHhhccCCCCC
Q 014255 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMG-EYGRMSKILKELHKSCQREDGT 172 (428)
Q Consensus 94 ~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g-~~~~A~~~l~el~~~~~~~~~~ 172 (428)
..+-...++...... +.+....+++.+++... ....++| ...|.+....| +++.|.+++....+.+.+
T Consensus 434 ~~vWi~y~~~erR~~--~l~~AR~vf~~A~~~~~-~~~~~ly----i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~---- 502 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQ--GLAASRKIFGKCRRLKK-LVTPDIY----LENAYIEYHISKDTKTACKVLELGLKYFAT---- 502 (679)
T ss_dssp HHHHHHHHHHHHHHH--CHHHHHHHHHHHHHTGG-GSCTHHH----HHHHHHHHTTTSCCHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcC-CCChHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHCCC----
Confidence 111111222211111 13334444444443200 0112233 35566655554 588999999988888753
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhh
Q 014255 173 DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (428)
Q Consensus 173 ~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (428)
+ .. +.+.-+++....|+..+|+.+++.|.+... ++.-...++..-..+....|+...+.+..-.+.+.+
T Consensus 503 -~----~~---~w~~y~~fe~~~~~~~~AR~lferal~~~~---~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 503 -D----GE---YINKYLDFLIYVNEESQVKSLFESSIDKIS---DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp -C----HH---HHHHHHHHHHHHTCHHHHHHHHHHHTTTSS---STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred -c----hH---HHHHHHHHHHhCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 11 223334455667899999999998854321 122222333322333334455555555554444444
No 218
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.47 E-value=0.54 Score=34.94 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=41.4
Q ss_pred HHHHhhcccc---ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 345 VLLKLIKPYT---RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 345 ~l~~~~~pYs---~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
.|+.+++... +++..+||+.||++...|...|.+|-.+|.|.-. +...|.=.+..+
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~~~ 72 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-SSSSCEEEEC--
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCeeEEeCc
Confidence 3445555444 9999999999999999999999999999998543 333355555444
No 219
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=89.41 E-value=5.7 Score=36.80 Aligned_cols=209 Identities=8% Similarity=-0.061 Sum_probs=118.8
Q ss_pred HHHHhhcccCCCCHHHHHHHHHHhhcCCCcc-chhhHHH-HHH-HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHH-
Q 014255 19 LCSILEKGLVETDPEGALAGFAEVVAMEPEK-AEWGFKA-LKQ-TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE- 94 (428)
Q Consensus 19 ~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~-~~~~~k~-l~~-l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~- 94 (428)
..+-.|-++...|+++|++.|.++++.+|+. ..|.-++ +.. -+.++...++..+.+..++.-+..- +.-..+...
T Consensus 9 ~~~~~~~~~~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~-p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSMLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS-MSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC-GGGGCCEEEC
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC-hhhhhhhhcc
Confidence 3444444555678999999999999999864 4563221 000 0333444444444444444333321 110000000
Q ss_pred --------------HHHHHHH-HHhcCCCCCChhHHHHHHHHHHHHHHHhh-hhhHHHHHhHHHHHHHHhhccHHHHHHH
Q 014255 95 --------------KCINNIM-DFVSGSASQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKI 158 (428)
Q Consensus 95 --------------k~v~~il-~~~~~~~~~~~~~~~~~~~~~le~l~~~~-~~kl~lr~~~~La~l~~~~g~~~~A~~~ 158 (428)
.-++-.. ..+. ...-|+.+.+.++... .+--.+ ....+|.++++.|+|++|...
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~---------~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEA---------AQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHH---------HHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred CCcccccccccCCHhHHHHHHHHHHH---------HCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 0000000 0000 0112344444444321 111222 456788899999999999999
Q ss_pred HHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcH
Q 014255 159 LKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQW 238 (428)
Q Consensus 159 l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y 238 (428)
++...... ++ ....+++......+..+|++.+|...|+++.. .-.+|..........|..+...|+.
T Consensus 158 l~~a~~~~-------d~---~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 158 VKSAGKWP-------DK---FLAGAAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp HTTGGGCS-------CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred HHHhhccC-------Cc---ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCH
Confidence 97443321 21 22345677777889999999999999998752 1112443444456679999999999
Q ss_pred HHHHHHHHHHHHh
Q 014255 239 ADAATDFFEAFKN 251 (428)
Q Consensus 239 ~~A~~~f~ea~~~ 251 (428)
.+|...|-+++..
T Consensus 225 deA~~~l~~a~a~ 237 (282)
T 4f3v_A 225 SAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 220
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=89.39 E-value=0.48 Score=40.08 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHH
Q 014255 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG-----------KYKEMMDAYREMLTYI 84 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~-----------~~~~l~e~~~~l~~~~ 84 (428)
+++|+..|++.++.+|+. ..++.+++.+|...| ++++++++|++-+..-
T Consensus 62 ~~eAi~~le~AL~ldP~~----~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKK----DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 689999999999998865 677889999999875 7888888888877764
No 221
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=88.69 E-value=0.61 Score=34.27 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=35.8
Q ss_pred HHHHHhhccc------cccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 344 QVLLKLIKPY------TRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 344 ~~l~~~~~pY------s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
..++.+++.+ -.+++.+||+.||++..-|...|..|-..|.|.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 3445555444 569999999999999999999999999999984
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.17 E-value=6.6 Score=33.26 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=49.1
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (428)
.-.+-+++.|.|+.|.-+..-+.......+.+-. .....+++..-+..++..++|.+|..+|++|......
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s---p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS---PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 3345667889999887666665555432221111 2566788888889999999999999999998554443
No 223
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.87 E-value=6.6 Score=38.82 Aligned_cols=111 Identities=20% Similarity=0.162 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh-hh
Q 014255 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA-KN 131 (428)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~-~~ 131 (428)
..+....++++|...|++.+|.+.+..+..-..+...+..-.+.+-..+..+....+ ...+...+..+....... ..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d--~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD--YSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhhcccCCc
Confidence 467778899999999999999999999876543445555555555444554443233 555566666654433332 33
Q ss_pred hhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 132 ~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
..+-++...-.|.++...++|.+|.+.+.++-..
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455566667889999999999999888777653
No 224
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.36 E-value=0.94 Score=32.14 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=31.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
..++..+||+.+|+|...|.+.|..|...|.|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4699999999999999999999999999999754
No 225
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=87.33 E-value=2 Score=32.31 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=46.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEccCCccchHHHHHHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDRSKGMKKYTAIDKWNSQLRKKRR 423 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~~~~~~~~~~~l~~w~~~v~~l~~ 423 (428)
..+++.+||+.+|++...+-..|.+|...|.|...-+..++ .+.+++. -.+.+..|...+..+.+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~-----g~~~~~~~~~~~~~~~~ 96 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDF-----GMEEAKRFLSSLKAVID 96 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH-----HHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHH-----HHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999876644333 3333322 23445556665555544
No 226
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.50 E-value=5.1 Score=32.19 Aligned_cols=112 Identities=8% Similarity=0.022 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC-
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA- 108 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~- 108 (428)
.|+++|++.|++..+.... .+. ++.+|...+..++++++|++....- ......++-..+....
T Consensus 9 ~d~~~A~~~~~~aa~~g~~------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--------~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM------FGC--LSLVSNSQINKQKLFQYLSKACELN--------SGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT------THH--HHHHTCTTSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHHHcCCCH------hhh--HHHHHHcCCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHcCCC
Confidence 4689999999999876521 223 9999999999999999998876641 1234444444443310
Q ss_pred -CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHh----hccHHHHHHHHHHHHhh
Q 014255 109 -SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKS 165 (428)
Q Consensus 109 -~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~----~g~~~~A~~~l~el~~~ 165 (428)
..+.+...++++.+.+. -.......||.+|.. .+|+++|.++++..-..
T Consensus 73 ~~~d~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACGL--------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 12355566666665441 112345689999998 89999999999888765
No 227
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=86.48 E-value=1.6 Score=35.71 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=50.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE--EEecCCCEEEEccCCccchHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNRLLERGDRSKGMKKYTAIDKWNS 416 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g--~IDq~~g~v~~~~~~~~~~~~~~l~~w~~ 416 (428)
..-.+.+.||+.+|+++.+|...|.+++..|.|.= +.|..++.....+-. .++++|..+..
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~---pL~ekL~~~~~ 111 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQ---PLWGKLYEYIQ 111 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECH---HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHH---HHHHHHHHHHH
Confidence 35579999999999999999999999999999864 667777777777665 56888876553
No 228
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=85.91 E-value=0.24 Score=49.19 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 014255 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYRE 79 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~ 79 (428)
+.+.|.+.++++ +...-| .++++.+.+.|+++++++.|.+
T Consensus 18 ~ld~A~~fae~~----~~~~vW-----s~La~A~l~~g~~~eAIdsfik 57 (449)
T 1b89_A 18 NLDRAYEFAERC----NEPAVW-----SQLAKAQLQKGMVKEAIDSYIK 57 (449)
T ss_dssp -------------------------------------------------
T ss_pred CHHHHHHHHHhC----CChHHH-----HHHHHHHHHcCCHHHHHHHHHc
Confidence 366777777776 111233 5788888888888888887755
No 229
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=85.89 E-value=3.3 Score=32.62 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=47.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHHHHHHHHHHHHHh
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRKKRRD 424 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~ 424 (428)
..++..+||+.+|++..-|-+.|..|...|.|...-+.......+. + .....+..|......+.+.
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~-~----~~~~~l~~~~~~~~~~~~~ 95 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIE-K----EPFTAVEAWLAEQQELWES 95 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC-S----HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEEC-H----HHHHHHHHHHHHHHHHHHH
Confidence 5579999999999999999999999999999988776322222222 2 3355666676666655543
No 230
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=85.68 E-value=3.9 Score=32.61 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=50.6
Q ss_pred cchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC--CEEEEccCCccc----hHHHHHHHHHHHHHHHHHh
Q 014255 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN--RLLERGDRSKGM----KKYTAIDKWNSQLRKKRRD 424 (428)
Q Consensus 356 I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~--g~v~~~~~~~~~----~~~~~l~~w~~~v~~l~~~ 424 (428)
++..+||+.++++..-|-+.|..|...|.|.-.-+..+ |........+.. .+.+.+..|...+.+.+++
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 117 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQSWADRLGQELKE 117 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999976554432 333333222222 3445667899998887654
No 231
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=85.43 E-value=2.1 Score=42.43 Aligned_cols=174 Identities=10% Similarity=0.083 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHH--h--hh
Q 014255 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE--A--KN 131 (428)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~--~--~~ 131 (428)
++..+|..|++.|+|+++..+|.+...+. ....--.--+-.+..++.+.+..+ ...-.+....|.+.=++ + ..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~-~LA~~L~~Lg~yq~AVea~~KA~~--~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVSNFG-RLASTLVHLGEYQAAVDGARKANS--TRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp -------------CTTTHHHHHHHTTCHH-HHHHHHHTTTCHHHHHHHHHHHTC--HHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhHH-HHHHHHHHhccHHHHHHHHHHcCC--chhHHHHHHHHHHcCcHHHHHHHH
Confidence 67788999999999999999998664332 110000000001111122211111 22223333333321011 0 00
Q ss_pred hhHHH--HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 132 ERLWF--KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 132 ~kl~l--r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
..+.. .-...++.+|...|.+++|..+++..... | ...+.++-....+|.+- ...++.+.+.
T Consensus 201 l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l--------e----~ah~~~ftel~il~~ky-~p~k~~ehl~--- 264 (449)
T 1b89_A 201 LHIVVHADELEELINYYQDRGYFEELITMLEAALGL--------E----RAHMGMFTELAILYSKF-KPQKMREHLE--- 264 (449)
T ss_dssp TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------T----TCCHHHHHHHHHHHHTT-CHHHHHHHHH---
T ss_pred HHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC--------c----HHHHHHHHHHHHHHHhc-CHHHHHHHHH---
Confidence 00100 11224667888999999999888888765 2 12334443333344332 3344333332
Q ss_pred hhhccCCChh-hHH----HHHHhhhHhHHhhhcHHHHHHHHHHH
Q 014255 210 AIKSAIPHPR-IMG----IIRECGGKMHMAERQWADAATDFFEA 248 (428)
Q Consensus 210 ~~~~~i~~p~-~~~----~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (428)
...+.+.-|+ +.+ .+|.--.-+|.+.++|..|.....+.
T Consensus 265 ~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 265 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 2223333233 222 22333345666789999998877776
No 232
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=85.15 E-value=4.8 Score=30.46 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=37.1
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~ 393 (428)
..+...-..++..+||+.+|++..-|-..|..|...|.|...-+..+
T Consensus 28 ~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 28 LKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 33333346799999999999999999999999999999987655444
No 233
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.92 E-value=27 Score=33.08 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=35.5
Q ss_pred CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCCh-hHHHHH
Q 014255 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDP-FIRNYI 334 (428)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~-~l~~~~ 334 (428)
.|.+..+.-|+.+...++...|..+...|+..+..|| .+...+
T Consensus 242 ~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L 285 (336)
T 3lpz_A 242 LPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTAL 285 (336)
T ss_dssp CHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHH
T ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 4667778888999999999999999999999999998 654433
No 234
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=84.36 E-value=7.1 Score=29.41 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=35.0
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEec
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
...++..+||+.+|++...|-..|.+|...|.|...-+.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 356899999999999999999999999999999876654
No 235
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=84.16 E-value=2.9 Score=39.46 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=58.1
Q ss_pred CCcchHHHHHHHHHHh---------------hCCHHHHHHHHHHhHHhhcCChhHHHHH-HHHHHHHHHHHHHHhhccc-
Q 014255 291 NDPEILAMTNLIAAYQ---------------RNEIIEFEKILKSNRKTIMDDPFIRNYI-EDLLKNVRTQVLLKLIKPY- 353 (428)
Q Consensus 291 ~~~~~~~l~~L~~af~---------------~~dl~~f~~~l~~~~~~l~~D~~l~~~~-~~l~~~i~~~~l~~~~~pY- 353 (428)
++|.+..=..+..|+. .+++..|.++... ..-|++..++ +....++|..+|..+.+.|
T Consensus 145 ~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~-----~~~pyL~aclle~~~~~vR~~AL~~i~kay~ 219 (316)
T 3t5v_A 145 QDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQS-----PSLPLLMGFFLQMHLTDIRFYALRALSHTLN 219 (316)
T ss_dssp TSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTC-----TTSCHHHHHHHGGGHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455553335666664 2789999987653 1235655443 3456789999999999998
Q ss_pred ---cccchhhHHhHhCCC-hHHHHHHHH
Q 014255 354 ---TRIRIPFISKELNVP-EKDVEQLLV 377 (428)
Q Consensus 354 ---s~I~l~~iA~~l~l~-~~~vE~~l~ 377 (428)
.+++++++++.|+.+ +++++..+-
T Consensus 220 ~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 220 KKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp TTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 489999999999995 777776663
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.59 E-value=2.7 Score=33.95 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=49.4
Q ss_pred HHHHHHhhcccCCCC-H---HHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 17 RVLCSILEKGLVETD-P---EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 17 ~~~~~~~ak~~~~~~-~---~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
....+--|=++..++ + ..+|.++++++..+. ..-...++..++--+++.|+|+++..++..++..-
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 334444444554443 4 459999999988641 22357899999999999999999999999999974
No 237
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=83.24 E-value=5.8 Score=29.59 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=39.2
Q ss_pred HhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 348 ~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
.++..-..++..+||+.+|++...|-..|..|...|.|...-|.......+
T Consensus 31 ~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l 81 (99)
T 3cuo_A 31 CMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSI 81 (99)
T ss_dssp HHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEE
T ss_pred HHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 333334478999999999999999999999999999997765543333333
No 238
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=82.01 E-value=18 Score=28.82 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=61.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCC
Q 014255 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPH 217 (428)
Q Consensus 142 La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~----~~d~~ka~~~l~~a~~~~~~i~~ 217 (428)
|+.+|...+.+++|.+++++.-.. | + .+.+.....+|.. .+|+.+|..++++|-.. .+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-----g--~-------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~ 92 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-----N--S-------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND 92 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-----T--C-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-----C--C-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CC
Confidence 889998888899999988887665 1 1 1233344566766 78999999999998543 22
Q ss_pred hhhHHHHHHhhhHhHHh----hhcHHHHHHHHHHHHH
Q 014255 218 PRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~----~~~y~~A~~~f~ea~~ 250 (428)
|. +.+ .-|.++.. .+|+..|..+|..+.+
T Consensus 93 ~~--a~~--~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 93 QD--GCL--ILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HH--HHH--HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HH--HHH--HHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 32 222 22666666 8999999999999855
No 239
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=81.86 E-value=3.2 Score=30.26 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=31.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
..++..+||+.+|++...|-..|..|...|.|..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5699999999999999999999999999999974
No 240
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=81.37 E-value=4.9 Score=31.09 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=34.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEec
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
..+++.+||+.+|++...|-..|..|...|.|...-+.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 74 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREG 74 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEET
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56899999999999999999999999999999876543
No 241
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=81.36 E-value=8.6 Score=28.83 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~ 392 (428)
..+++.+||+.+|++...|-+.|..|...|.|...-+..
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQ 73 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 688999999999999999999999999999998764433
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.15 E-value=2.9 Score=34.10 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
|...+|..+++++..+++. ...++..++--+++.|+|+.+..+...++..-
T Consensus 58 d~~~GI~LLe~l~~~~~~~---~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCcch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4578999999998765422 57789999999999999999999999998863
No 243
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=81.06 E-value=9.2 Score=29.39 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=49.5
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHHHHcCceeEEEecCCCE---EEEccCCc-cchHHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRSK-GMKKYTAIDKWNSQL 418 (428)
Q Consensus 353 Ys~I~l~~iA~~l-~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~---v~~~~~~~-~~~~~~~l~~w~~~v 418 (428)
...+++.+||+.+ |++..-+-..|.+|...|.|..+.|..++. +.+++... .-.....+.+|....
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~~~~~l~~w~~~~ 95 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDMLXAWGANH 95 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHHHHHHHHHHHHHh
Confidence 4678999999999 999999999999999999999988876653 34443321 123345666787653
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.14 E-value=3.1 Score=34.36 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=50.0
Q ss_pred hhHHHHHHhhcccCC----CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 15 VSRVLCSILEKGLVE----TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 15 ~~~~~~~~~ak~~~~----~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
++.-..|--|-++.. .|...+|.++++++...++. ...++..++--+++.|+|+++..+...++..-
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 333444444444433 34578999999998865542 46789999999999999999999999999863
No 245
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=80.10 E-value=1 Score=35.05 Aligned_cols=44 Identities=25% Similarity=0.184 Sum_probs=36.3
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEE
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ 388 (428)
.+..+..|=..++..+||+.+|++...|-+.+..|...|.+...
T Consensus 23 Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 23 VLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33334445446899999999999999999999999999999754
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.59 E-value=40 Score=31.47 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=27.3
Q ss_pred CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhc
Q 014255 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIM 325 (428)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~ 325 (428)
.|.+..+.-|+.+...++...|..+.+.|++.+.
T Consensus 242 ~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~ 275 (312)
T 2wpv_A 242 YSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ 275 (312)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH
T ss_pred CccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4667777888888999999889988888877654
No 247
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=78.46 E-value=11 Score=28.86 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=33.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEe
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ID 390 (428)
..++..+||+.+|++..-|-..|..|...|.|...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4589999999999999999999999999999987655
No 248
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=78.31 E-value=9.6 Score=31.95 Aligned_cols=84 Identities=14% Similarity=0.039 Sum_probs=50.0
Q ss_pred hccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhc----------CHHHHHHHHHHHHhhhccCCCh
Q 014255 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK----------NNKKLKQLYQKALAIKSAIPHP 218 (428)
Q Consensus 149 ~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~----------d~~ka~~~l~~a~~~~~~i~~p 218 (428)
.+.|++|.+.+......-++ + .+.+.....++...+ .+.+|...|++|.++...
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-----~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---- 78 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-----D-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---- 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HhHHHHHHHHHHHHHHHCCC-----C-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC----
Confidence 35677888777777766331 1 223333333344443 356899999988876432
Q ss_pred hhHHHHHHhhhHhHHhh-----------hcHHHHHHHHHHHHH
Q 014255 219 RIMGIIRECGGKMHMAE-----------RQWADAATDFFEAFK 250 (428)
Q Consensus 219 ~~~~~i~~~~g~~~~~~-----------~~y~~A~~~f~ea~~ 250 (428)
. ...+...|..+... ++|.+|..+|-.+.+
T Consensus 79 -~-~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 79 -K-DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp -C-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -c-HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 1 12233446666544 588888888888865
No 249
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=78.02 E-value=5.3 Score=32.80 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=43.1
Q ss_pred HHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCcc
Q 014255 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG 404 (428)
Q Consensus 344 ~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~ 404 (428)
+.+..+...... +.++||+.+++|...+++.+.+|...|.|...=. ..|+.-..+++++
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar~p~~I 71 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLKKDPADI 71 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEESSCGGGC
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceecCCHHHC
Confidence 344545443445 9999999999999999999999999999976544 4455444444443
No 250
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=77.94 E-value=23 Score=28.30 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=50.1
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHHHHcCceeEEEecCCCE---EEEccCCc-cchHHHHHHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRSK-GMKKYTAIDKWNSQLRKKR 422 (428)
Q Consensus 353 Ys~I~l~~iA~~l-~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~---v~~~~~~~-~~~~~~~l~~w~~~v~~l~ 422 (428)
....++.+|++.+ |++..-+-..|.+|...|.|.-+.|..++. +.+++... .-.....+..|....-.-.
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~l~~w~~~~~~~~ 120 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVAALADWIELNLPQV 120 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999 799999999999999999999888876663 33333211 1123345567876654333
No 251
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=76.71 E-value=4.4 Score=33.43 Aligned_cols=47 Identities=11% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEecC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq~ 392 (428)
++..+..-.++++.+||+.+|+|...+-..+.+|...|.|. +.+|+.
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 34455555789999999999999999999999999999996 467875
No 252
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=76.60 E-value=4.7 Score=32.97 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEecC
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq~ 392 (428)
.++..+....++++.+||+.+|++...|-..|.+|...|.|. +.+|+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 344455555789999999999999999999999999999996 457765
No 253
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=75.47 E-value=12 Score=31.43 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=40.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCcc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG 404 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~ 404 (428)
..++.++||+.+++|...+++.+.+|-..|.|...=....|..-..+++++
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~eI 93 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKI 93 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTTC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHHHC
Confidence 469999999999999999999999999999998764444455544444433
No 254
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=75.28 E-value=4.9 Score=33.52 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=39.2
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEecC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq~ 392 (428)
++..+....++++.+||+.+|+|...+-..+.+|...|.|. +.+|+.
T Consensus 15 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 15 ILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 44455555679999999999999999999999999999996 466754
No 255
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=75.15 E-value=16 Score=30.44 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=48.3
Q ss_pred HHhHHHHHHHHhhc---cHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 137 KTNLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 137 r~~~~La~l~~~~g---~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
.+.+++|-.+...+ +++++..+|+++.+.. ++ ....+.+...+-.|.++|||.+|+.+.+.+..+
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p---~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SK---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CH---HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------Cc---cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44557777777766 7889999999998873 11 123455555667789999999999999988765
No 256
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=74.41 E-value=6.2 Score=31.48 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=36.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
..++.++||+.+|+|...+++.+..|...|.|...=....|..-..++.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~ 73 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPD 73 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGG
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHH
Confidence 5689999999999999999999999999999865433334444444433
No 257
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=74.32 E-value=4.2 Score=30.14 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=33.5
Q ss_pred HhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 348 ~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
.+++.-. ++..+||+.+|++...|-..|-+|-.+|.|..
T Consensus 24 ~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 24 KTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 4444333 99999999999999999999999999999865
No 258
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=73.94 E-value=5.3 Score=32.82 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=39.5
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEecC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq~ 392 (428)
++..+..-.+++..+||+.+|++...+-..+.+|...|.|. +.+|..
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 44455556789999999999999999999999999999985 456764
No 259
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=73.82 E-value=8 Score=31.85 Aligned_cols=50 Identities=6% Similarity=-0.058 Sum_probs=37.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCcc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG 404 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~ 404 (428)
..++.++||+.+++|...+++.+.+|...|.|...=. ..|+.-..++.++
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~~p~~I 78 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLKDLHEI 78 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGGC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCCChhhC
Confidence 5799999999999999999999999999999876544 3445444444433
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.74 E-value=1.2e+02 Score=33.74 Aligned_cols=204 Identities=14% Similarity=0.152 Sum_probs=96.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhh-----------------hhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHH
Q 014255 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSA-----------------VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQ 120 (428)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-----------------~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~ 120 (428)
.-+|.+|...|++++|.+++++...-+... ........=..+++..++... ..+...++..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~--~~~~vi~fa~ 923 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES--AYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS--CCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 446888999999999998886542211000 000001112233444444322 2445555555
Q ss_pred HHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHH--H-HHH-H-hh
Q 014255 121 TTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE--I-QMY-T-ET 195 (428)
Q Consensus 121 ~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e--~-~l~-~-~~ 195 (428)
.+++.... .++.+-..+..++-+.+++.|+|++|-..|......-.. .+- -..++...... . ++. + .-
T Consensus 924 lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r----~~c--Lr~LV~~lce~~~~~~L~~lpf~ 996 (1139)
T 4fhn_B 924 LADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK----KSC--LLDFVNQLTKQGKINQLLNYSMP 996 (1139)
T ss_dssp HHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC----HHH--HHHHHHHHHHHCCHHHHHHHTTT
T ss_pred HHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH----HHH--HHHHHHHHHhCCChhhhhCCCCc
Confidence 55543221 122222223346667788899999998777655433110 010 01111111110 0 010 1 12
Q ss_pred cCHHHHHHHHH-HHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhc----ch-hHHHHHHHHHH
Q 014255 196 KNNKKLKQLYQ-KALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG----NQ-RRIQCLKYLVL 269 (428)
Q Consensus 196 ~d~~ka~~~l~-~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~----~~-~~~~~l~y~~L 269 (428)
|..+.....+. +|++.......|.....++. .++..+||+.|+..+|+-...+...+ .. ...++-.|+++
T Consensus 997 gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs----~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~~yL~~ 1072 (1139)
T 4fhn_B 997 TLRQDVDNLLERKAFQMINVESQPCWYNILFS----WRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIEHYLIV 1072 (1139)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHH----HHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccCCCHHHHhHh----hhhccCChHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHH
Confidence 44444433333 45544322223433332222 35568999999999999765553211 11 12233347766
Q ss_pred HHHhh
Q 014255 270 ANMLM 274 (428)
Q Consensus 270 ~~lL~ 274 (428)
...|+
T Consensus 1073 INaLs 1077 (1139)
T 4fhn_B 1073 LNTLE 1077 (1139)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 261
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=73.54 E-value=23 Score=28.40 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
..+++.|+..-+.--+.|=.++ +...||+.||++..-|..-+..|-.+|.|..+ +..|+.+...
T Consensus 17 ~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~~ 81 (134)
T 4ham_A 17 EQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIANQ 81 (134)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeCC
Confidence 4556666665556667787888 88999999999999999999999999998654 5667666543
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.54 E-value=17 Score=30.69 Aligned_cols=67 Identities=7% Similarity=0.110 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhcc---CCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 185 ~l~e~~l~~~~~d~~ka~~~l~~a~~~~~~---i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+..+++-.+..+-|.-|..+...+.+..+. ...|........+-|..++.+++|..|...|..+..-
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 456677788888999998888876655533 3357777777888899999999999999999998653
No 263
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=73.54 E-value=12 Score=29.04 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=52.6
Q ss_pred HHHHHHHhhccccccchhhHHhHh-CCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC-ccchHHHHHHHHHHHHH
Q 014255 342 RTQVLLKLIKPYTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS-KGMKKYTAIDKWNSQLR 419 (428)
Q Consensus 342 ~~~~l~~~~~pYs~I~l~~iA~~l-~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~-~~~~~~~~l~~w~~~v~ 419 (428)
+...|..+..--.++++.+|++.+ |++..-+-..|..|-..|.|.-+.+ ....+.+++.. ..-.....+..|.....
T Consensus 29 rl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~~l~~l~~w~~~~~ 107 (111)
T 3df8_A 29 TMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVRNSLMPLLQYISVLD 107 (111)
T ss_dssp HHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHHHHHHHHHHHHHHhc
Confidence 333344443322346699999999 9999999999999999999998888 44444444332 11234566778887654
No 264
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=73.08 E-value=17 Score=27.06 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=41.7
Q ss_pred ccccchhhH----HhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 353 YTRIRIPFI----SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 353 Ys~I~l~~i----A~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
...++..+| |+.++++..-|-..|-+|...|.|.-..|.....+.+++.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~ 72 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEK 72 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHH
Confidence 457889999 9999999999999999999999998888876666666654
No 265
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=72.92 E-value=12 Score=30.58 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=38.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK 403 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~ 403 (428)
..++.++||+.+++|...+++.+.+|-..|.|...=....|..-..++++
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~ 76 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEE 76 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGGG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCccc
Confidence 46999999999999999999999999999998765333334443333333
No 266
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=72.64 E-value=4.8 Score=33.71 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=41.8
Q ss_pred HHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEecCC
Q 014255 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQVN 393 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq~~ 393 (428)
.|+..++.-.++++.+||+.+|+|...|-..+-+|...|.|. +.+|+..
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~ 58 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVK 58 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHH
Confidence 456666666789999999999999999999999999999985 6778643
No 267
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=72.42 E-value=6.9 Score=32.10 Aligned_cols=46 Identities=9% Similarity=0.121 Sum_probs=38.4
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEecC
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq~ 392 (428)
+..+....++++.+||+.+|++...+-..|.+|...|.|. +.+|+.
T Consensus 13 L~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 13 VRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 3444445689999999999999999999999999999995 456764
No 268
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=71.97 E-value=21 Score=28.12 Aligned_cols=42 Identities=7% Similarity=-0.022 Sum_probs=37.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
..++..+||+.++++...|-..|.+|...|.|.-..|..++.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 479999999999999999999999999999998887776654
No 269
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=71.74 E-value=19 Score=28.33 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=38.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
...++..+||+.++++...|-..|.+|...|.|.-..|..++.
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 3468999999999999999999999999999998888776663
No 270
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=71.42 E-value=23 Score=28.18 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=40.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 399 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~ 399 (428)
...++..+||+.++++...|-..|.+|...|.|.-.-|..++ .+.++
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT 97 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEIT 97 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEEC
Confidence 678999999999999999999999999999999877766554 44444
No 271
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=71.15 E-value=13 Score=29.79 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=39.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
..++..+||+.++++...+-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 44 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 93 (145)
T 3g3z_A 44 GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTE 93 (145)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeECh
Confidence 45999999999999999999999999999999866665554 566664
No 272
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=70.95 E-value=30 Score=25.87 Aligned_cols=47 Identities=6% Similarity=0.083 Sum_probs=38.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
...++.+||+.+|++...|-+.|..|...|.|..+-+.......+++
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 45899999999999999999999999999999876655444444443
No 273
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.69 E-value=22 Score=28.01 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=38.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
...++..+||+.++++...|-..|.+|...|.|.-..|..++.
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 3469999999999999999999999999999998887776654
No 274
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=70.68 E-value=17 Score=27.72 Aligned_cols=64 Identities=16% Similarity=0.019 Sum_probs=46.8
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHHHHcCceeEEEecCCCE---EEEccCC-ccchHHHHHHHHHH
Q 014255 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRS-KGMKKYTAIDKWNS 416 (428)
Q Consensus 353 Ys~I~l~~iA~~l-~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~---v~~~~~~-~~~~~~~~l~~w~~ 416 (428)
...+++.+||+.+ |++..-+-..|.+|...|.|..+.|..++. +.+++.. ..-.....+.+|..
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDEIAKFGM 104 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHHHHHHHHHHHH
Confidence 4568999999999 599999999999999999999888876653 3333321 11133456667764
No 275
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=70.56 E-value=21 Score=28.05 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=39.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEE
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v 396 (428)
...++..+||+.++++...|-..|.+|...|.|.-.-|..++..
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~ 84 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRR 84 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcee
Confidence 46789999999999999999999999999999988877766643
No 276
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=70.43 E-value=7.8 Score=32.80 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=39.2
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEecC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq~ 392 (428)
++..+..-.++++.+||+.+|+|...|-..|.+|...|.|. +.+|+.
T Consensus 22 IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 22 ILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 34444445689999999999999999999999999999995 467765
No 277
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=70.11 E-value=47 Score=27.68 Aligned_cols=51 Identities=8% Similarity=0.147 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccC
Q 014255 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (428)
Q Consensus 112 ~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~ 168 (428)
.+-..+.|+.|+.. .|-|.++-+..|+|-..+|+...|.++|......+..
T Consensus 76 ~d~aR~vy~~a~~~------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 76 PDDARDYFQMARAN------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp GGGCHHHHHHHHHH------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44567888888773 3445788889999999999999999999999998764
No 278
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=70.10 E-value=14 Score=29.57 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=34.9
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
+..+.... ++..+||+.+|++..-|-..|.+|...|.|.-.-|..++.
T Consensus 44 L~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 44 LMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp HHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 33444445 9999999999999999999999999999998877665554
No 279
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=70.00 E-value=10 Score=29.52 Aligned_cols=63 Identities=21% Similarity=0.175 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
..+++.|+..-+..-..|=.++ +...||+.||++..-|..-+..+..+|.|..+ +..|+.+..
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~~ 75 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEeC
Confidence 3455556555445556777888 89999999999999999999999999997543 566665543
No 280
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=69.92 E-value=5 Score=34.02 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=39.1
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEecC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq~ 392 (428)
|+..+....++++.+||+.+|++...|-..|.+|...|.|. +.+|..
T Consensus 32 IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 32 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 34444445689999999999999999999999999999985 467764
No 281
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=69.84 E-value=24 Score=27.97 Aligned_cols=43 Identities=23% Similarity=0.138 Sum_probs=38.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
...++..+||+.++++...|-..|.+|...|.|.-.-|..++.
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4569999999999999999999999999999999887776664
No 282
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=69.34 E-value=11 Score=28.20 Aligned_cols=47 Identities=13% Similarity=0.307 Sum_probs=38.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
.++..+||+.++++..-|-..|.+|...|.|...-|.-...|.+++.
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~ 76 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDK 76 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChh
Confidence 38999999999999999999999999999994444544456666643
No 283
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=69.22 E-value=27 Score=29.09 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=51.1
Q ss_pred hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014255 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 133 kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~ 210 (428)
+.|..+-++.|.+ .+.+|.++|.++++.....+. .+ ..+++.-++.-.+.||..+|+..+.+|..
T Consensus 58 rrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK-----------kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 58 ESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK-----------KF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT-----------TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH-----------HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 4455666677766 677999999999999987642 23 66777778888899999999999998865
No 284
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.10 E-value=21 Score=28.37 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=41.9
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEccC
Q 014255 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (428)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~~ 401 (428)
.....++..+||+.++++...|-..|.+|...|.|.-..|..++ .+.+++.
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~ 101 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPK 101 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTT
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHh
Confidence 45567999999999999999999999999999999877665544 4555543
No 285
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=68.77 E-value=23 Score=28.95 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=40.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 399 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~ 399 (428)
...++..+||+.++++..-|-..|-+|...|.|.-.-|..++ .|.++
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 107 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVT 107 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEEC
Confidence 457999999999999999999999999999999988877776 44444
No 286
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=68.43 E-value=5.4 Score=32.83 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=38.7
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee---EEEecC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~---g~IDq~ 392 (428)
++..+....++++.+||+.+|+|...+-..+.+|...|.|. +.+|+.
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 34444445689999999999999999999999999999985 457753
No 287
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=68.18 E-value=23 Score=28.04 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=39.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 399 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~ 399 (428)
...++..+||+.++++...|-..|.+|...|.|.-.-|..++ .+.++
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT 90 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYAT 90 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEC
Confidence 357899999999999999999999999999999887766554 34444
No 288
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=68.01 E-value=25 Score=28.06 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=36.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
...++..+||+.++++...|-..|.+|...|.|.-.-|..++.
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 3568999999999999999999999999999998877665553
No 289
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=68.00 E-value=19 Score=26.72 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhcC---HHHHHHHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 183 EVYAIEIQMYTETKN---NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 183 e~~l~e~~l~~~~~d---~~ka~~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
+++...+......++ ..+|+..+.++...... ...+. ...|..++..|+|..|..+|......
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~----~~rA~--~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY----NEAAL--SLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT----CHHHH--HHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC----CHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444443443 68999999999875322 12232 23489999999999999999998764
No 290
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=66.80 E-value=26 Score=27.54 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=36.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
..++.++||+.++++...+-..|-+|...|.|.-.-|..++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 47899999999999999999999999999999877776665
No 291
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=66.63 E-value=28 Score=31.03 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=38.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
.-..+...||+.+|+|+..|+..|.+|...|.+. -..+|.|.+.+
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~~ 220 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLDE 220 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEECH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEecH
Confidence 4688999999999999999999999999999987 34567777653
No 292
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.36 E-value=27 Score=27.79 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=37.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
...++..+||+.+|++...|-..|.+|...|.|.-..|..++ .|.+++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 98 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSS 98 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECH
Confidence 567999999999999999999999999999999876655444 455554
No 293
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=66.31 E-value=6.4 Score=31.77 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=35.2
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
+..+..-.++++.+||+.+|++...+-..+.+|...|.|.+
T Consensus 10 l~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 10 LEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 34444556789999999999999999999999999999964
No 294
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=66.20 E-value=14 Score=29.53 Aligned_cols=43 Identities=5% Similarity=0.040 Sum_probs=29.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
...++.++||+.++++...+-..|.+|...|.|.-.-|..++.
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR 91 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQR 91 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCC
Confidence 3479999999999999999999999999999998777766654
No 295
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=66.11 E-value=20 Score=28.17 Aligned_cols=42 Identities=2% Similarity=0.133 Sum_probs=37.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
...++..+||+.++++...|-..|.+|...|.|.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 457999999999999999999999999999999877766555
No 296
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=66.06 E-value=24 Score=28.38 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=40.0
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEc
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 399 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~ 399 (428)
....++..+||+.++++...|-..|.+|...|.|.-.-|..++ .+.++
T Consensus 48 ~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 98 (155)
T 1s3j_A 48 KHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLT 98 (155)
T ss_dssp HHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEEC
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEEC
Confidence 3457899999999999999999999999999999877766554 44444
No 297
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=65.92 E-value=11 Score=29.84 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=37.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
...++..+||+.++++...|-..|.+|...|.|.-.-|..++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 456999999999999999999999999999999887775554
No 298
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=65.45 E-value=22 Score=27.35 Aligned_cols=43 Identities=9% Similarity=-0.023 Sum_probs=38.5
Q ss_pred cccchhhHHhHh-CCChHHHHHHHHHHHHcCceeEEEecCCCEE
Q 014255 354 TRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (428)
Q Consensus 354 s~I~l~~iA~~l-~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v 396 (428)
..+++.+||+.+ +++..-+-..|.+|...|.|....|..++..
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~ 77 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPR 77 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCe
Confidence 468999999999 9999999999999999999998888766543
No 299
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=65.37 E-value=8.4 Score=31.49 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=39.6
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE---EEecC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQV 392 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g---~IDq~ 392 (428)
++..+..-.+++..+||+.+|++...+-..+.+|...|.|.+ .+|..
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 445555556899999999999999999999999999999964 67764
No 300
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=64.90 E-value=14 Score=29.45 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
..+++.|+..-+..-+.|=.++ +...||+.+|++..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 4455566555444455677888 59999999999999999999999999998543 556766654
No 301
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=64.73 E-value=12 Score=29.84 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
..+++.++..-+..-+.|=.++ +...||+.+|++..-|..-+..|..+|.|.. -+..|+.+..
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 4455556554444456677888 9999999999999999999999999999854 4566776654
No 302
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=64.59 E-value=20 Score=28.58 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=38.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC---CEEEEccC
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~---g~v~~~~~ 401 (428)
...++..+||+.++++...+-..|-+|...|.|.-.-|..+ ..|.+++.
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~ 100 (143)
T 3oop_A 49 NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDK 100 (143)
T ss_dssp HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHH
T ss_pred cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHH
Confidence 36789999999999999999999999999999987765544 45666643
No 303
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=64.33 E-value=18 Score=26.83 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=36.1
Q ss_pred ccchhhHHhHhCCChHH-HHHHHHHHHHcCcee-EEEecCCCEEEEcc
Q 014255 355 RIRIPFISKELNVPEKD-VEQLLVSLILDNRID-GHIDQVNRLLERGD 400 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~-vE~~l~~lI~~g~i~-g~IDq~~g~v~~~~ 400 (428)
.++..+||+.++++..- +-..|.+|...|.|. ..-|.....|.+++
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~ 77 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTE 77 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECH
Confidence 68999999999999999 999999999999998 12233333444443
No 304
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=63.47 E-value=17 Score=28.63 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=39.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
..++..+||+.++++...+-..|-+|...|.|.-..|..++ .|.+++
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~ 101 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNA 101 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECH
Confidence 56899999999999999999999999999999876666554 455444
No 305
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=63.34 E-value=25 Score=28.57 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=38.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
...++..+||+.++++...+-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~ 112 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTE 112 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECH
Confidence 357899999999999999999999999999999888766665 455553
No 306
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.80 E-value=36 Score=27.38 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=36.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
..++..+||+.++++...|-..|.+|...|.|.-.-|..++
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 46999999999999999999999999999999887766554
No 307
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=62.66 E-value=34 Score=28.95 Aligned_cols=44 Identities=11% Similarity=0.257 Sum_probs=39.8
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
|...++.+.||+.++++...|-..|.+|...|.|.-..|..++.
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 97 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKR 97 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 45689999999999999999999999999999999888877763
No 308
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=62.56 E-value=21 Score=29.78 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=39.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK 403 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~ 403 (428)
=..++.++||+.+++|...+++.+.++-..|.|...=-...|+.-..++++
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~ 76 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLALAD 76 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCGGG
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEecCChhh
Confidence 356999999999999999999999999999999765444344544444433
No 309
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=62.29 E-value=24 Score=28.27 Aligned_cols=52 Identities=8% Similarity=0.041 Sum_probs=41.6
Q ss_pred hhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 349 ~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
.+.....++..+||+.++++...+-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 48 ~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 102 (152)
T 3bj6_A 48 GLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTP 102 (152)
T ss_dssp HHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECH
T ss_pred HHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEECh
Confidence 3333457999999999999999999999999999999877665444 555554
No 310
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=62.11 E-value=32 Score=28.33 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=37.6
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
...++..+||+.++++...|-..|.+|...|.|.-..|..++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 346999999999999999999999999999999887776665
No 311
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=61.72 E-value=11 Score=28.92 Aligned_cols=51 Identities=8% Similarity=0.034 Sum_probs=40.2
Q ss_pred Hhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 348 KLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 348 ~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
..+.|=..+ +...||+.||++..-|..-+..|..+|.|...-.-..|+...
T Consensus 35 ~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 35 EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 555666677 999999999999999999999999999986543213465544
No 312
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=61.57 E-value=36 Score=26.93 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=37.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g 394 (428)
..++..+||+.+|++..-|-..|.+|...|.|.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 56999999999999999999999999999999988777665
No 313
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=61.49 E-value=45 Score=26.04 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=32.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~I 389 (428)
..+++.+||+.+|++...|-+.|..|...|.|...-
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 568999999999999999999999999999997643
No 314
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=61.16 E-value=48 Score=25.02 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=33.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEe
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ID 390 (428)
..+++.+||+.+|++...|-..|..|...|.|...-+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4579999999999999999999999999999987654
No 315
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=60.78 E-value=21 Score=26.51 Aligned_cols=44 Identities=16% Similarity=-0.007 Sum_probs=36.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
..+++.+||+.+|++..-|-+.|..|...|.|...- |...+...
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~----g~y~l~~~ 85 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG----ERWVVTDA 85 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC----CEEEECCC
Confidence 568999999999999999999999999999997532 55555544
No 316
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=60.31 E-value=37 Score=27.02 Aligned_cols=47 Identities=19% Similarity=0.104 Sum_probs=38.9
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
....++..+||+.+|++..-|-..|.+|...|.|.-. ..+.+.+++.
T Consensus 19 ~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~ 65 (142)
T 1on2_A 19 EKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSK 65 (142)
T ss_dssp HHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHH
T ss_pred hcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchh
Confidence 3456999999999999999999999999999998654 3466777653
No 317
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=59.92 E-value=36 Score=27.58 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=38.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
...++..+||+.++++..-|-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~ 114 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTP 114 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECH
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECH
Confidence 457899999999999999999999999999999877655443 455543
No 318
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=59.92 E-value=54 Score=29.95 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=46.3
Q ss_pred cCCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
++.+++++|++....-|..+|.+ .+.=..+.++++=.|+|+.+...++.+.+..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~d----a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKD----ASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 56678999999999999998865 4444578999999999999999999998876
No 319
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=59.48 E-value=25 Score=28.55 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=35.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 399 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~ 399 (428)
...++..+||+.++++...|-..|.+|...|.|.-.-|..++ .+.++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 110 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALS 110 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEEC
Confidence 457999999999999999999999999999999766655444 44444
No 320
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=59.44 E-value=29 Score=27.48 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=40.6
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
+.++.....++.++||+.++++...+-..|.+|...|.|.-..|..++ .|.+++
T Consensus 42 L~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 98 (140)
T 3hsr_A 42 LMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTE 98 (140)
T ss_dssp HHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred HHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeECh
Confidence 344444568999999999999999999999999999999877766555 555554
No 321
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=59.34 E-value=33 Score=27.59 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=40.3
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC---CEEEEcc
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 400 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~---g~v~~~~ 400 (428)
+.++.....++..+||+.++++...|-..|.+|...|.|.-..|..+ ..+.+++
T Consensus 49 L~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 105 (155)
T 3cdh_A 49 LACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTD 105 (155)
T ss_dssp HHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECH
T ss_pred HHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECH
Confidence 34444456799999999999999999999999999999976555444 4456554
No 322
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=59.23 E-value=18 Score=28.93 Aligned_cols=63 Identities=5% Similarity=0.001 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
..+++.|+..-+..-+.|=.++ +...||+.||+|..-|..-+..|..+|.|.. .+..|+.+..
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~~ 70 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVSA 70 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEECT
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEec
Confidence 3455555544444445677888 8999999999999999999999999999854 4556766543
No 323
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=58.67 E-value=20 Score=28.25 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=39.5
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
.++..+||+.++++...|-..|-+|...|.|.-.-|..++ .+.+++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~ 98 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTK 98 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECH
Confidence 6999999999999999999999999999999877776655 455553
No 324
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=58.50 E-value=5 Score=30.62 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
..+++.++...+...+.|=..+ +..+||+.+|++..-|..-+..|...|.|.. -+..|+....
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~--~~g~G~~v~~ 77 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS--RGALGTVVEK 77 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE--ETTTEEESCS
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--eCCCeEEEcc
Confidence 3445555543333344566788 9999999999999999999999999999864 3445655443
No 325
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=58.40 E-value=32 Score=28.01 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=47.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC--EEEEccCC-ccchHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR--LLERGDRS-KGMKKYTAIDKWNSQ 417 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g--~v~~~~~~-~~~~~~~~l~~w~~~ 417 (428)
....++.+|++.+|++..-+-..|.+|...|.|.-..+..++ .+.+++.. ..-.....+..|...
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~l~~l~~w~~~ 102 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLLVAIRQWGED 102 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999988877665 22333221 111234456677764
No 326
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=58.34 E-value=14 Score=29.87 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=39.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE--EEecCCC---EEEEcc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNR---LLERGD 400 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g--~IDq~~g---~v~~~~ 400 (428)
...++..+||+.++++...|-..|.+|...|.|.- .-|..++ .+.+++
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~ 105 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSK 105 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECH
Confidence 35699999999999999999999999999999988 6676665 566654
No 327
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=58.28 E-value=12 Score=25.44 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=30.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
--+.++..|+.+|++.++|-..|.++=..|.|.
T Consensus 24 GildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 457899999999999999999999999999875
No 328
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=58.16 E-value=51 Score=26.00 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=36.8
Q ss_pred chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEE
Q 014255 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (428)
Q Consensus 357 ~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v 396 (428)
+.++||+.++++...+-..|.+|...|.|.-.-|..++..
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~ 91 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRI 91 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCce
Confidence 9999999999999999999999999999998888877643
No 329
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=58.05 E-value=25 Score=28.08 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=36.1
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
....++..+||+.++++...|-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 51 ~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~ 102 (148)
T 3nrv_A 51 SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTE 102 (148)
T ss_dssp HSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECH
T ss_pred cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECH
Confidence 3458999999999999999999999999999999866655544 455553
No 330
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=57.53 E-value=72 Score=25.50 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=50.7
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHHHHcCceeEEEecCCCE---EEEccCC-ccchHHHHHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRS-KGMKKYTAIDKWNSQLRKK 421 (428)
Q Consensus 353 Ys~I~l~~iA~~l-~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~---v~~~~~~-~~~~~~~~l~~w~~~v~~l 421 (428)
....++.+|++.+ |++..-+-..|.+|..+|.|.=+.+..++. +..++.. ..-.....+..|...=..-
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~~~~ 110 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESNRDV 110 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999 999999999999999999998877776542 2333322 1223456777887654433
No 331
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=57.23 E-value=47 Score=27.40 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=50.3
Q ss_pred HHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHHHHHHHHHHHH
Q 014255 343 TQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRKKR 422 (428)
Q Consensus 343 ~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~ 422 (428)
...++++++ .-+.+...||+.+|+|-..+...|-.+=.+|.+. ++-.+...+..-.. ++|.+.|...+
T Consensus 13 k~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~-~Vk~GK~ayw~L~~----------s~y~~kV~dil 80 (165)
T 2vxz_A 13 LRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVT-RVAFGNVALVCLSM----------DQYRQLVDGMI 80 (165)
T ss_dssp HHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE-EEEETTEEEEESCH----------HHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceE-EEEEccEEEEEecH----------HHHHHHHHHHH
Confidence 346677888 8899999999999999999999999999999874 23333333333321 14555555555
Q ss_pred Hhh
Q 014255 423 RDN 425 (428)
Q Consensus 423 ~~~ 425 (428)
+|-
T Consensus 81 rel 83 (165)
T 2vxz_A 81 REV 83 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 332
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=57.03 E-value=27 Score=28.08 Aligned_cols=53 Identities=9% Similarity=0.205 Sum_probs=38.4
Q ss_pred HHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE--EEecCCC---EEEEcc
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNR---LLERGD 400 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g--~IDq~~g---~v~~~~ 400 (428)
+.++ ....++..+||+.++++...|-..|.+|...|.|.- ..|..++ .|..++
T Consensus 44 L~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~ 101 (151)
T 3kp7_A 44 LNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSN 101 (151)
T ss_dssp HHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECH
T ss_pred HHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECH
Confidence 3344 567899999999999999999999999999999985 3455555 455553
No 333
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=56.86 E-value=59 Score=24.30 Aligned_cols=42 Identities=10% Similarity=-0.081 Sum_probs=35.5
Q ss_pred cchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 356 I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
++...||..+|++...+...+-.+...|.|.-. .|-..+++.
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~----~~~~~LT~k 62 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE----GKQYMLTKK 62 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----TTEEEECHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE----CCeeEEChh
Confidence 999999999999999999999999999998655 333555544
No 334
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=56.15 E-value=15 Score=28.70 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=41.8
Q ss_pred HHHhhccccccchhhHHhHh--CCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 346 LLKLIKPYTRIRIPFISKEL--NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l--~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
|+.++....+++...||..+ +++...|-+.|.+|...|.|... ..|+..+++
T Consensus 18 IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~ 71 (111)
T 3b73_A 18 ILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---ANGVYVITE 71 (111)
T ss_dssp HHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---STTCEEECH
T ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---CCceEEECc
Confidence 34445445689999999999 99999999999999999999874 556555553
No 335
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=55.99 E-value=66 Score=25.13 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=33.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEe
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ID 390 (428)
...++.+||+.+|++...|-+.|..|...|.+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4578999999999999999999999999999977544
No 336
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=55.89 E-value=1.3e+02 Score=28.07 Aligned_cols=124 Identities=12% Similarity=0.098 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhcCCCcc-chhhHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 014255 32 PEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRL--------------GKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (428)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~-~~~~~k~l~~l~~l~~~~--------------~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (428)
++++++.+.+.++.++.+ ..|..+ +.++... +.+++.++++.+.+..- |.- ..+=.
T Consensus 161 ~~eel~~~~~~I~~~p~N~SAW~~R-----~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d---~SaW~ 231 (331)
T 3dss_A 161 PAEELAFTDSLITRNFSNYSSWHYR-----SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PND---QSAWF 231 (331)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHH-----HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTC---HHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCC---HHHHH
Confidence 356666666666666532 344333 2233332 44667777777776654 331 11111
Q ss_pred -HHHHHHHhcCCCCC---ChhHHHHHHHHHHHHHHHhhhhhHHH-HHhHHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 97 -INNIMDFVSGSASQ---NFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 97 -v~~il~~~~~~~~~---~~~~~~~~~~~~le~l~~~~~~kl~l-r~~~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
.+-++......++. ..+.+.+-++.+.+.++-..+.+ |. .....+....-..|.++++..+|.++.+.
T Consensus 232 Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~-w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 232 YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc-hHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 22222222111110 01334455555555555444433 33 11111111222357788899999999887
No 337
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=55.54 E-value=29 Score=25.06 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=34.4
Q ss_pred hhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEE
Q 014255 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (428)
Q Consensus 349 ~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ 388 (428)
-+.+=...+...||..||++-.+|-+.|-+|-..|.+...
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 3445566999999999999999999999999999988654
No 338
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=55.53 E-value=16 Score=26.76 Aligned_cols=40 Identities=8% Similarity=0.173 Sum_probs=35.1
Q ss_pred HHhhccccccchhhHHhHhCCChH-HHHHHHHHHHHcCcee
Q 014255 347 LKLIKPYTRIRIPFISKELNVPEK-DVEQLLVSLILDNRID 386 (428)
Q Consensus 347 ~~~~~pYs~I~l~~iA~~l~l~~~-~vE~~l~~lI~~g~i~ 386 (428)
+.+++--...+..+||+.+|++.. .|-..|..|-.+|.|.
T Consensus 17 L~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 17 CDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 455555567889999999999999 9999999999999997
No 339
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=54.93 E-value=32 Score=28.05 Aligned_cols=48 Identities=6% Similarity=0.069 Sum_probs=38.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC---CEEEEccC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~---g~v~~~~~ 401 (428)
..++..+||+.++++...|-..|-+|...|.|.-.-|..+ ..|.+++.
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~ 116 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRK 116 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHH
Confidence 4789999999999999999999999999999986665554 45666643
No 340
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=54.89 E-value=18 Score=28.66 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=39.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
...++..+||+.++++...|-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~ 99 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTD 99 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEECh
Confidence 346899999999999999999999999999999877775554 444443
No 341
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=54.23 E-value=14 Score=29.95 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=36.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
...++..+||+.++++...|-..|-+|...|.|.-.-|..++ .|.+++
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 103 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTD 103 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECH
Confidence 467899999999999999999999999999999876665554 555554
No 342
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=53.75 E-value=7.6 Score=34.49 Aligned_cols=65 Identities=17% Similarity=0.055 Sum_probs=39.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHH----HHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYT----AIDKWNSQLRKKR 422 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~----~l~~w~~~v~~l~ 422 (428)
-.++-.+||..+|++.+.|-+.+.++..+|.|. ...|.+.+.+++......+ -+..|++.+++|-
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~ 244 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILD----KKKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLA 244 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEESCHHHHHHHHTSSCCCC-----------
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE----eCCCEEEEecHHHHHHHHccCcccccCCchhHHHHH
Confidence 367999999999999999999999999998874 3456777776542211111 1335777777764
No 343
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=53.46 E-value=23 Score=30.53 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=33.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ 388 (428)
.+++..+||+.+|++...|-..|.+|...|.|.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999999999999999999999776
No 344
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=52.86 E-value=19 Score=29.05 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=37.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
...++..+||+.++++..-|-..|.+|...|.|.-..|..++ .|.+++
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 109 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTE 109 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECH
Confidence 457899999999999999999999999999999876655444 566553
No 345
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=52.68 E-value=54 Score=26.90 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=37.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC---CEEEEccC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~---g~v~~~~~ 401 (428)
..++..+||+.++++..-|-..|-+|...|.|.-.-|..+ ..|.+++.
T Consensus 67 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~ 117 (166)
T 3deu_A 67 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEK 117 (166)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGG
T ss_pred CCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHH
Confidence 4599999999999999999999999999999987765544 45666643
No 346
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=52.06 E-value=9.4 Score=36.70 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHH---HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 331 RNYIEDLLKNVRTQV---LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 331 ~~~~~~l~~~i~~~~---l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
+.|...+-+.++..| +++++. ...+|-.+||+.+|++..-|-..+.+|+.+|.|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 7 HHHHHHMPKSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp ---------------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred ccccccCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 334444555555553 466667 8899999999999999999999999999999995
No 347
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=51.74 E-value=93 Score=25.05 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=40.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEccC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~~ 401 (428)
.++.++||+.++++..-+-..|-+|...|.|.=..|..++ .|.+++.
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~ 95 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQ 95 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGG
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHH
Confidence 4567899999999999999999999999999988888887 4555543
No 348
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=51.19 E-value=1.5e+02 Score=27.26 Aligned_cols=158 Identities=11% Similarity=0.113 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Q 014255 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYK--EMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (428)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~--~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (428)
.+++++++.+.++++.++.+ +.+-.+-+-++...|+++ +.++++.+++..- +....+-.-+.. ++..+...
T Consensus 124 ~~~~~EL~~~~~~l~~~pkn----y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~--ll~~l~~~ 196 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKN----HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFF--LLFSKKHL 196 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHH--HHHSSGGG
T ss_pred CCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHH--HHHhcccc
Confidence 57899999999999988754 333344455666778888 9999999999865 432222221111 22222111
Q ss_pred CCCChhHHHHHHHHHHHHHHHh-hhhhHHHHHhHHHHHHHHhhccH-HHHHHHHHHHHhhccCCCCCcchhhhhhHHHHH
Q 014255 108 ASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWFDMGEY-GRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~le~l~~~-~~~kl~lr~~~~La~l~~~~g~~-~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~ 185 (428)
. ..+...+-++.+.+.|... .+...|. .++.++...|.. .++..+..++...-.. + .+....+++.
T Consensus 197 ~--~~~~~~eEl~~~~~aI~~~p~n~SaW~----y~~~ll~~~~~~~~~~~~~~~~~~~~~~~-----~-~~s~~al~~l 264 (306)
T 3dra_A 197 A--TDNTIDEELNYVKDKIVKCPQNPSTWN----YLLGIHERFDRSITQLEEFSLQFVDLEKD-----Q-VTSSFALETL 264 (306)
T ss_dssp C--CHHHHHHHHHHHHHHHHHCSSCHHHHH----HHHHHHHHTTCCGGGGHHHHHTTEEGGGT-----E-ESCHHHHHHH
T ss_pred c--hhhhHHHHHHHHHHHHHhCCCCccHHH----HHHHHHHhcCCChHHHHHHHHHHHhccCC-----C-CCCHHHHHHH
Confidence 1 1222334444444444432 4555554 223344444442 3333444444332100 0 0023333333
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 186 AIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 186 l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
+.++...|+..+|..+++.+.
T Consensus 265 ---a~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 265 ---AKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHccCCHHHHHHHHHHHH
Confidence 346668899999999998865
No 349
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=51.02 E-value=26 Score=27.83 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=40.8
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
|..+.+.-..+++.+||+.+|++..-|-..|.+|...|.|.-. . +.+.+++.
T Consensus 22 l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~--~--~~~~Lt~~ 73 (139)
T 2x4h_A 22 IKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK--E--DGVWITNN 73 (139)
T ss_dssp HHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T--TEEEECHH
T ss_pred HHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec--C--CeEEEChh
Confidence 3344445568999999999999999999999999999988642 2 66777653
No 350
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=51.00 E-value=1.2e+02 Score=31.26 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=21.4
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
.+||+.+++.|+++.|.+.+..+...
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~ 710 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDL 710 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccCh
Confidence 47889999999999999888887554
No 351
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=50.63 E-value=13 Score=26.85 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVS 378 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~ 378 (428)
|-+.++..||..+|++.++||..+..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999987654
No 352
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=50.09 E-value=48 Score=26.42 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=32.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
..++..+||+.++++...|-..|-+|...|.|.-.-|..++.
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R 94 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRR 94 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccc
Confidence 358999999999999999999999999999998776666653
No 353
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=49.80 E-value=63 Score=30.91 Aligned_cols=67 Identities=9% Similarity=-0.010 Sum_probs=52.0
Q ss_pred HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014255 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (428)
Q Consensus 134 l~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~ 212 (428)
.++.+...++..++..|++.+|...+..+...-+ +-=+.+...|+.+...|+...|...|+.++...
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHP------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4445666889999999999999998888866521 112466777788999999999999999886643
No 354
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=49.59 E-value=41 Score=32.26 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
..+++.+|+..+..++..+|-+ .....+++..+...|+..++++.|..+...+
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~~----E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPYR----EPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4567888998888888777632 4678899999999999999999999998876
No 355
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=49.18 E-value=34 Score=27.64 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=37.0
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
....++..+||+.++++...|-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~ 110 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTD 110 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECH
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEECh
Confidence 3457999999999999999999999999999999766555444 455554
No 356
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=49.15 E-value=35 Score=28.03 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC
Q 014255 340 NVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (428)
Q Consensus 340 ~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~ 393 (428)
..|...|..+. -..++..+||+.+|++...|-..|..|...|.|..+-+...
T Consensus 58 p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 58 PTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRF 109 (151)
T ss_dssp HHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCE
Confidence 34444444443 35689999999999999999999999999999988754433
No 357
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=48.99 E-value=87 Score=23.90 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=35.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
..+++.+||+.+|++..-|-+.|.+|...|.+.-.-| .+.+..+.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~--~r~~~~~~ 88 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRA--GRSIVYSL 88 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEE--TTEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec--CCEEEEEE
Confidence 4689999999999999999999999999999865333 33444443
No 358
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=48.64 E-value=57 Score=26.65 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=35.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~ 395 (428)
..++..+||+.++++..-|-..|-+|...|.|.-.-|..++.
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 102 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRR 102 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCC
Confidence 479999999999999999999999999999999888887774
No 359
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=48.35 E-value=16 Score=29.19 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=39.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC---CEEEEcc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 400 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~---g~v~~~~ 400 (428)
..++..+||+.++++...|-..|.+|...|.|.-..|..+ ..|.+++
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~ 102 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTE 102 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECH
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECH
Confidence 4789999999999999999999999999999976665544 3566653
No 360
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=46.35 E-value=52 Score=25.46 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=32.6
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEe
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ID 390 (428)
..++.+||+.+|++..-|-+.|..|...|.+...-+
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 478899999999999999999999999999987654
No 361
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=45.14 E-value=29 Score=27.55 Aligned_cols=58 Identities=7% Similarity=-0.012 Sum_probs=40.4
Q ss_pred cchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCC-C-EEEEccCCccchHHHHHHHHHH
Q 014255 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN-R-LLERGDRSKGMKKYTAIDKWNS 416 (428)
Q Consensus 356 I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~-g-~v~~~~~~~~~~~~~~l~~w~~ 416 (428)
++.+.||+.+|+++..|...|.+++..|.|.=+-|..+ | +...++-. .++++|..+..
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~---pl~~kL~~~~~ 111 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLE---PLWEKLVHHLY 111 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECH---HHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehH---HHHHHHHHHHH
Confidence 79999999999999999999999999999965444332 3 22333333 56777776543
No 362
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=45.10 E-value=35 Score=30.23 Aligned_cols=64 Identities=11% Similarity=0.050 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEE
Q 014255 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (428)
Q Consensus 332 ~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (428)
+....+++.|+..-+...+.|=.+++...||+.||+|..-|-.-|..+-.+|.+.- -+..|+.+
T Consensus 26 s~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~--~~~~G~~V 89 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRV--ETHKGAVV 89 (237)
T ss_dssp GHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTTEEEE
T ss_pred ccHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCceEE
Confidence 44455788887776666778889999999999999999999999999999999763 34456554
No 363
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=45.05 E-value=66 Score=21.39 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=36.4
Q ss_pred HHHHHHHhhccccccchhhHHhHh-----CCChHHHHHHHHHHHHcCceeEEEecCCCEEE
Q 014255 342 RTQVLLKLIKPYTRIRIPFISKEL-----NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (428)
Q Consensus 342 ~~~~l~~~~~pYs~I~l~~iA~~l-----~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (428)
|...+..++..-..++.++|++.+ +++..-|-+.|-+ .|.+ ++...+|...
T Consensus 6 R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~---lg~v--~~~~~~~~~~ 61 (64)
T 2p5k_A 6 RHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKE---LHLV--KVPTNNGSYK 61 (64)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH---HTCE--EEEETTTEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH---cCCE--EEecCCCcee
Confidence 334455555555679999999999 9999999888873 4666 5655666543
No 364
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=44.32 E-value=34 Score=27.34 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=27.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEE
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v 396 (428)
..++..+||+.++++..-+-..|-+|...|.|.-.-|..++..
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~ 98 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQ 98 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchh
Confidence 5789999999999999999999999999999987776666543
No 365
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=43.58 E-value=24 Score=25.50 Aligned_cols=35 Identities=11% Similarity=0.354 Sum_probs=31.7
Q ss_pred cccccchhhHHhHh-CCChHHHHHHHHHHHHcCcee
Q 014255 352 PYTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 352 pYs~I~l~~iA~~l-~l~~~~vE~~l~~lI~~g~i~ 386 (428)
+=+..-|.++++.| +..+-+|-+.+..||.+|++.
T Consensus 18 ~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 18 SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 44688899999999 999999999999999999984
No 366
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=43.34 E-value=15 Score=29.20 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 336 ~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
.+++.|+..-+..-..|=.++ +...||+.+|++..-|..-+..+..+|.|..+ +..|+.+..
T Consensus 15 ~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~~ 77 (126)
T 3ic7_A 15 QIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVAS 77 (126)
T ss_dssp HHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEcc
Confidence 455555554444556777888 89999999999999999999999999998654 556666543
No 367
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=43.15 E-value=36 Score=29.82 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=37.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK 403 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~ 403 (428)
-.++-.+||..+|++.+-|-+.+.++..+|.|. ...|.|.+.+++.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~d~~~ 237 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS----IHKKKITVHKPVT 237 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEECC---
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE----EcCCEEEECCHHH
Confidence 367889999999999999999999999999875 2367888887754
No 368
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=42.72 E-value=46 Score=24.82 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=32.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEe
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ID 390 (428)
...++.+||+.+|++...+-+.|..|-.. .+..+-+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 45899999999999999999999999999 8877654
No 369
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=42.38 E-value=46 Score=28.22 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhccc-cccchhhHHhHhCCChHHHHHHHHHHHHcCc-eeE
Q 014255 340 NVRTQVLLKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNR-IDG 387 (428)
Q Consensus 340 ~i~~~~l~~~~~pY-s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~-i~g 387 (428)
.-|...|+.++..- ..++.++||+.+|+|..-|.+-|..|-..|. |.+
T Consensus 20 ~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34555666666543 4599999999999999999999999999998 754
No 370
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=41.88 E-value=35 Score=32.82 Aligned_cols=41 Identities=7% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
+++++.....+|-.+||+.+|++..-|-..+.+|+..|.|.
T Consensus 21 il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~ 61 (406)
T 1z6r_A 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQ 61 (406)
T ss_dssp HHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 45566667899999999999999999999999999999984
No 371
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=41.82 E-value=57 Score=29.20 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=41.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCc-cchHHHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK-GMKKYTAIDKWNSQLRK 420 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~-~~~~~~~l~~w~~~v~~ 420 (428)
..++.++||+.+|++..-+-+.|.+|...|.|... ...+.+..+..-. .......+-.|...-.+
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~~w~~aq~~ 230 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVIESSKSSEE 230 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC-----------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHHHHhcccccHHHHHH
Confidence 56899999999999999999999999999999765 4566777764321 11123334456655444
No 372
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=41.26 E-value=39 Score=22.34 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=24.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
+.-.+..+||+.+|+++.-|...+.++..
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45668899999999999999988877654
No 373
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=40.89 E-value=5.7 Score=36.47 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred cccchhhHHhHh-CCChHHHHHHHHHHHHcCceeEEEec
Q 014255 354 TRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 354 s~I~l~~iA~~l-~l~~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
.=|++..|++.+ ++++++|...|-.|+.+|.|+-.||.
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 567889999998 69999999999999999999999985
No 374
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=40.73 E-value=54 Score=26.35 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=39.9
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCE---EEEcc
Q 014255 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGD 400 (428)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~---v~~~~ 400 (428)
.+-..++.++||+.++++..-+-..|-+|...|.|.=.-|..++. |.+++
T Consensus 47 ~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~ 99 (147)
T 4b8x_A 47 SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITD 99 (147)
T ss_dssp SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECH
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECH
Confidence 345679999999999999999999999999999999888887763 44443
No 375
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=40.72 E-value=24 Score=27.94 Aligned_cols=33 Identities=6% Similarity=0.149 Sum_probs=30.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCc-ee
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNR-ID 386 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~-i~ 386 (428)
.-.++..||+.-|++...++..|.+++..|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 6789999999999999999999999999995 54
No 376
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=40.68 E-value=74 Score=28.33 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
..+++.|+..-. . ..|=.++ +-..||+.+|++..-|.+-+..|..+|.|.- +..|+.+...
T Consensus 17 ~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~ 78 (248)
T 3f8m_A 17 QVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECCC
T ss_pred HHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEccC
Confidence 455556655444 5 7777888 9999999999999999999999999999865 7778776543
No 377
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=40.57 E-value=68 Score=23.92 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=34.2
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHH
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~ 190 (428)
|..+.-|+-++..|+|.+|.-+++++...+.++ . ...++.+|+.+.+
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~----~---i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNLSDNE----E---IKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----H---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHccccCH----H---HHHHHHHHHHHHH
Confidence 344466777889999999999999999886542 2 2445667777655
No 378
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=40.47 E-value=38 Score=25.17 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=26.0
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~ 382 (428)
+.-.+..+||+.+|++..-|...+.++...
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 677899999999999999999988887653
No 379
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=40.43 E-value=31 Score=29.87 Aligned_cols=47 Identities=9% Similarity=-0.095 Sum_probs=37.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
..++..+||+.++++..-|-..|-+|...|.|.-..|..++ .|.+++
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 110 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTE 110 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECH
Confidence 46999999999999999999999999999999887776665 555553
No 380
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=40.36 E-value=1.3e+02 Score=23.90 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=44.2
Q ss_pred HHhHHHHHHHHhhccH---HHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 137 KTNLKLCKIWFDMGEY---GRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 137 r~~~~La~l~~~~g~~---~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
.+.+++|--+....+- .++..+|.++.+.. ++ ...-+.+...+--+.++|+|.+|+.+.+....+
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-------~p---~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-------SK---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-------CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------Cc---chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4455677666666544 45788888887652 11 123455555567788999999999998887654
No 381
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=40.25 E-value=69 Score=21.72 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=34.8
Q ss_pred HHHhhccc-cccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 346 LLKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 346 l~~~~~pY-s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
|+..+.+. .-++-.++|..|++|.+....-+-++.++|.+.-
T Consensus 8 LLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 8 LLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp HHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 34444443 5788999999999999999999999999999853
No 382
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=39.77 E-value=3.4e+02 Score=28.07 Aligned_cols=166 Identities=5% Similarity=-0.059 Sum_probs=90.9
Q ss_pred HHHHHHhCCHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh--------h-
Q 014255 61 VKLYYRLGKYKEMM-DAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA--------K- 130 (428)
Q Consensus 61 ~~l~~~~~~~~~l~-e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~--------~- 130 (428)
++.+...|+.+++. +.|..-+... |. .. .+--..++..... .+.+.+...|+.+++.+... +
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~-P~---s~--~Lwl~~a~~ee~~--~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCI-PN---SA--VLAFSLSEQYELN--TKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHC-TT---CH--HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhC-CC---CH--HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 45556677777775 7777766543 32 11 1111122222221 13566777888887764210 0
Q ss_pred -hh------hHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhh-cCHHHHH
Q 014255 131 -NE------RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLK 202 (428)
Q Consensus 131 -~~------kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~-~d~~ka~ 202 (428)
++ +-+..+-+..+++....|+.+.|..++....+.+... ...+++.-+.+.... ++..+|+
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-----------~~~lyi~~A~lE~~~~~d~e~Ar 490 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-----------TPDIYLENAYIEYHISKDTKTAC 490 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-----------CTHHHHHHHHHHHTTTSCCHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----------ChHHHHHHHHHHHHhCCCHHHHH
Confidence 00 0111334466677777888999999998887763211 123344444454444 4589999
Q ss_pred HHHHHHHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHh
Q 014255 203 QLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (428)
Q Consensus 203 ~~l~~a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (428)
.++..+.+.... +|. ++..-+.+....++...|...|-.+...
T Consensus 491 ~ife~~Lk~~p~--~~~----~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 491 KVLELGLKYFAT--DGE----YINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHHTT--CHH----HHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCC--chH----HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999988654221 222 2222234445567788888777776543
No 383
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=39.69 E-value=29 Score=23.88 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=26.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
+.-.+..+||+.+|+|..-|...+.+++.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47889999999999999999999988764
No 384
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=39.23 E-value=40 Score=32.76 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=36.0
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
+++++.....+|-.+||+.+|++..-|-..+.+|+..|.|.
T Consensus 44 il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~ 84 (429)
T 1z05_A 44 VYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIH 84 (429)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45555566789999999999999999999999999999984
No 385
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=39.20 E-value=66 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=29.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCce
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i 385 (428)
=+-++-..||+.+|++..+|.+.+-+|=.+|+|
T Consensus 32 G~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 32 GSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp TSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 356788999999999999999999999988885
No 386
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=39.02 E-value=4.1e+02 Score=28.82 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=57.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHH-HHHhhhhhHHHHHh
Q 014255 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKA-LEEAKNERLWFKTN 139 (428)
Q Consensus 61 ~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~-l~~~~~~kl~lr~~ 139 (428)
.++|+..|++++++.+=-.-=+.|.-.-...+++.++.++++.|.... ...++..-+. -....+.+ ...+.
T Consensus 77 Skvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~-------~~~~~~~~~~~~~~~id~r-L~~Lv 148 (963)
T 4ady_A 77 SKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEA-------SKQYTKDEQFYTKDIIDPK-LTSIF 148 (963)
T ss_dssp HHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHH-------HHHHHHCTTGGGSSCSCHH-HHHHH
T ss_pred HHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHH-------hhccccccccccccccCHH-HHHHH
Confidence 599999999999998765544455333467888999989988764311 0100000000 00001112 12334
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 140 LKLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 140 ~~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
.++....+..|.+.+|..++-|++..
T Consensus 149 ~~iv~~cl~hnae~~AvdLalE~erL 174 (963)
T 4ady_A 149 ERMIEKCLKASELKLALGIALEGYRL 174 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhH
Confidence 46667777888888888877777654
No 387
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=38.93 E-value=66 Score=25.35 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=46.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhccccccchhh-HHhHhCCChHHHHHHHHHHHHcCce
Q 014255 325 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPF-ISKELNVPEKDVEQLLVSLILDNRI 385 (428)
Q Consensus 325 ~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~-iA~~l~l~~~~vE~~l~~lI~~g~i 385 (428)
+.|..|.++...|-++|. .-+..+.++|+++|+++ +..++|++.-+....|-.+...|.+
T Consensus 17 l~d~el~~rar~LA~kIv-~pv~el~~~hTTvSVERtVlr~mGidgvda~~iVd~~~e~gLL 77 (121)
T 3kp1_E 17 LSDEELQTRFWEMAEKIV-DPLLDLGKKNTTPSIERSVLLRMGFSSLEAKAIVDKTMDRGLM 77 (121)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHHHHHHHHEECHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHcCCccHHHHHHHHHhCCCccchHHHHHHHHHcccc
Confidence 356777777777777774 34567889999999986 7889999988888777777777776
No 388
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.24 E-value=49 Score=23.75 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=25.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~ 382 (428)
+.-.+..+||+.+|++..-|...+.++...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567899999999999999999988876543
No 389
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=38.13 E-value=48 Score=27.82 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=35.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
.++-.+||+.+|++.+.+-+.+.++-.+|.|.- ..|.|.+.++
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~ 206 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHV----KGKTMVVFGT 206 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEEETC
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEEeC
Confidence 578899999999999999999999999998742 2456666543
No 390
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.00 E-value=1.1e+02 Score=31.75 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=24.9
Q ss_pred HHHHHhHHHHHHH--HhhccHHHHHHHHHHHH
Q 014255 134 LWFKTNLKLCKIW--FDMGEYGRMSKILKELH 163 (428)
Q Consensus 134 l~lr~~~~La~l~--~~~g~~~~A~~~l~el~ 163 (428)
-.+.+.+++..++ +..|+|+.|++.++++.
T Consensus 534 ~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 534 EICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 3456777888886 78899999999999986
No 391
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=37.66 E-value=46 Score=24.37 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=25.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~ 382 (428)
+.-.+..+||+.+|++..-|...+.++...
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567899999999999999999998887643
No 392
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=37.65 E-value=57 Score=28.22 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+.+++.|+..-+..-+.|=.+++-..||+.||+|..-|-.-|..+-.+|.+.-+ +..|+.+..
T Consensus 15 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 77 (218)
T 3sxy_A 15 TKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVTD 77 (218)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEcC
Confidence 445666666666666778889999999999999999999999999999999654 555665543
No 393
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=37.58 E-value=2.5e+02 Score=25.97 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC
Q 014255 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (428)
..+.-++.++..|+... --+ .-.-++.+..=|.++++|+++++++.+....+=..---+...++..-+++.+.+
T Consensus 12 ~~~r~l~rl~~~I~~G~-yYE-AhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~ 85 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGD-YYE-AHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDL 85 (312)
T ss_dssp CHHHHHHHHHHHHHHTC-HHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccC-hHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 46666777766665431 011 134445556667777888888887655554431222344555666666666665
No 394
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=37.52 E-value=72 Score=27.32 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=37.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
-.++-++||+.+|++.+.+-+.+.++-.+|.|. ...|.|.+.+++
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~~ 223 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLA----LDGKRIKIIDCD 223 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe----eCCCEEEEeCHH
Confidence 468899999999999999999999999999874 235678877653
No 395
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=37.42 E-value=1e+02 Score=24.79 Aligned_cols=45 Identities=18% Similarity=0.036 Sum_probs=36.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
..++...||+.+|++..-|-..|.+|...|.|.-+- ++.+.+++.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~---~~~~~lT~~ 97 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP---WRGVFLTAE 97 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET---TTEEEECHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec---CCceEEChh
Confidence 567899999999999999999999999999876442 355666643
No 396
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=37.30 E-value=39 Score=28.51 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=34.9
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
.++-.+||+.+|++.+.+-+.+.++-.+|.|. ...|.+.+.+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 208 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVYG 208 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEEC
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEEEe
Confidence 67889999999999999999999999999875 2345565554
No 397
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=37.27 E-value=54 Score=22.48 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
+.-.+..+||+.+|++..-|...+.++..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45569999999999999999988877653
No 398
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=37.25 E-value=39 Score=28.87 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=37.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
-.++-.+||+.+|++.+.+-+.+.++-.+|.|. ...|.|.+.+++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~~ 221 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH----LDGREISILDRE 221 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE----ESSSCEEESCST
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE----ecCCEEEEeCHH
Confidence 367889999999999999999999999999874 345667777665
No 399
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=36.96 E-value=33 Score=29.24 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=37.9
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
.++-.+||+.+|++.+.+-+.+.+|-.+|.|. ...|.|.+.+++
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~~ 212 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVK----LSRGKITILDSK 212 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCHH
Confidence 67889999999999999999999999999884 346778887664
No 400
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=36.18 E-value=2.9e+02 Score=26.28 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=35.0
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
.++..+.-.|++++|...++.....- + + +..+.....++...|++.+|.+.|.+|..+
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln--------~---s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLE--------M---S--WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--------C---C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC--------C---C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44555555577777777777666661 0 1 223344456666777777777777776554
No 401
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=36.07 E-value=1.2e+02 Score=26.19 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=43.2
Q ss_pred HHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 346 l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
|..+.+.-..++..+||+.++++..-|-..|.+|...|.|.-.- ++.|..++.
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~---~~~i~LT~~ 63 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK---KAGYLLTDL 63 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TTEEEECHH
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec---CCCeEECHH
Confidence 34455556789999999999999999999999999999986543 367888764
No 402
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=36.04 E-value=48 Score=28.43 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcC
Q 014255 338 LKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDN 383 (428)
Q Consensus 338 ~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g 383 (428)
...-|.+.|+++++....++.++||+.|++|++-+..-+..+=..|
T Consensus 9 ~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 9 KKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 3455777888888888999999999999999988877776654433
No 403
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=35.78 E-value=36 Score=28.66 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=37.5
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
.++-++||+.+|++.+.|-+.+.++-.+|.|. ...|.|.+.+++
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~~ 189 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIR----SGYGKIQLLDLK 189 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCHH
Confidence 57889999999999999999999999999986 235778887653
No 404
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=35.69 E-value=58 Score=22.73 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=25.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHc
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~ 382 (428)
+.-.+..+||+.+|++..-|...+.++...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 577899999999999999999888876643
No 405
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=35.68 E-value=2.1e+02 Score=26.33 Aligned_cols=88 Identities=11% Similarity=-0.052 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHhhhccCCChhhHHHHHH
Q 014255 152 YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-----KNNKKLKQLYQKALAIKSAIPHPRIMGIIRE 226 (428)
Q Consensus 152 ~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~-----~d~~ka~~~l~~a~~~~~~i~~p~~~~~i~~ 226 (428)
...|...+++.... |+ ...--..|.....+|... ||..+|+..+++|..++..- .+. .+.
T Consensus 179 l~~A~a~lerAleL--------DP--~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~---~id--~~v 243 (301)
T 3u64_A 179 VHAAVMMLERACDL--------WP--SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH---DPD--HHI 243 (301)
T ss_dssp HHHHHHHHHHHHHH--------CT--THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT---CSH--HHH
T ss_pred HHHHHHHHHHHHHh--------CC--CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC---Cch--HHH
Confidence 45666777777776 21 112223555556677774 99999999999999876421 112 222
Q ss_pred hhhHhHHh-hhcHHHHHHHHHHHHHhhhh
Q 014255 227 CGGKMHMA-ERQWADAATDFFEAFKNYDE 254 (428)
Q Consensus 227 ~~g~~~~~-~~~y~~A~~~f~ea~~~~~~ 254 (428)
.-|..++. .+++..|.++|-++......
T Consensus 244 ~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 244 TYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 23555555 58999999999999775544
No 406
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=34.95 E-value=32 Score=29.22 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=38.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
-.++-.+||+.+|++.+.+-+.+.++-.+|.|. ...|.|.+.+++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~~ 206 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVR----LGPGTVEVREAA 206 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCHH
Confidence 578899999999999999999999999999885 245778887663
No 407
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=34.61 E-value=87 Score=31.77 Aligned_cols=81 Identities=12% Similarity=0.189 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchh-hHHhHhCCChHHHHH
Q 014255 296 LAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIP-FISKELNVPEKDVEQ 374 (428)
Q Consensus 296 ~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~-~iA~~l~l~~~~vE~ 374 (428)
..+++-.+.|+. .|+++...+..--.-||-+..-+..-......-++..+.+-|..+.+. .-.+-+.-+++++|.
T Consensus 486 ~~iKe~fk~Fn~----~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~ 561 (571)
T 2pft_A 486 QMIKERFKGFND----GLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGD 561 (571)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHH
Confidence 456777777766 677777766543446888876554444444455666666667677664 355667899999999
Q ss_pred HHHHHH
Q 014255 375 LLVSLI 380 (428)
Q Consensus 375 ~l~~lI 380 (428)
.|.++-
T Consensus 562 ~L~~LF 567 (571)
T 2pft_A 562 MIDRLF 567 (571)
T ss_dssp HHHTSS
T ss_pred HHHHHh
Confidence 988753
No 408
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=34.58 E-value=51 Score=28.50 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=37.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
-.++-.+||+.+|++.+.+-+.+.++..+|.|.- ..|.|.+.+++
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~----~~~~i~I~d~~ 229 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIEL----HRKEILIPDAQ 229 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE----ETTEEEESCGG
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEe----cCCEEEEeChH
Confidence 3678999999999999999999999999998852 25677776654
No 409
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=34.57 E-value=63 Score=28.55 Aligned_cols=64 Identities=6% Similarity=0.019 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
..+++.|+..-...-..|=.++ +-..||+.+|++..-|.+-+..+..+|.|..+ +..|+.+...
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 76 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPK 76 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccC
Confidence 3455555544444445677889 89999999999999999999999999998654 6667766544
No 410
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=34.48 E-value=1.4e+02 Score=22.56 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=33.9
Q ss_pred ccccchhhHHhHhC----CChHHHHHHHHHHHHcCceeEEEe
Q 014255 353 YTRIRIPFISKELN----VPEKDVEQLLVSLILDNRIDGHID 390 (428)
Q Consensus 353 Ys~I~l~~iA~~l~----l~~~~vE~~l~~lI~~g~i~g~ID 390 (428)
...++..+||+.++ ++..-|-..|-+|...|.|.-.-|
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 45689999999999 789999999999999999976666
No 411
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=34.42 E-value=57 Score=24.71 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=24.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
...|+.+||+.+|+|.+-|...+.+++.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999999988877754
No 412
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=33.99 E-value=59 Score=23.75 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
+.-.+...||+.+|++..-|...+.++..
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56679999999999999999988887653
No 413
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=33.98 E-value=72 Score=30.57 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014255 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (428)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (428)
.++++++|+..+++.+..+++ | -++..+++++.-.|+++++.+.|.+-+..-
T Consensus 289 ~~gd~d~A~~~l~rAl~Ln~s---~--~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 289 VKGKTDESYQAINTGIDLEMS---W--LNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCHHHHHHHHHHHHHHCCC---H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHhcCCC---H--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 367899999999999988742 3 466778999999999999999998877764
No 414
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=33.28 E-value=3.1e+02 Score=25.71 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=19.9
Q ss_pred ChhhHHHHHHhhhHhHHhhhcHHHHHHHHH
Q 014255 217 HPRIMGIIRECGGKMHMAERQWADAATDFF 246 (428)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ 246 (428)
+|.++. .-|.+++.+++|..|..+|.
T Consensus 135 dp~LH~----~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 135 DPELHH----VVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CHHHHH----HHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHH----HHHHHHHccCCHHHHHHHHH
Confidence 565543 34788888999999999986
No 415
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=33.12 E-value=97 Score=23.54 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=36.7
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHH
Q 014255 299 TNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQ 344 (428)
Q Consensus 299 ~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~ 344 (428)
.++...|. +|-..........+..+..|+.|...++.|...+...
T Consensus 54 ~~IG~~fg-RDHsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~l~~~ 98 (101)
T 3pvv_A 54 PKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQR 98 (101)
T ss_dssp HHHHHHTT-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 46777888 8888888888888888899999999998888877643
No 416
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=32.76 E-value=42 Score=28.80 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=37.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
.++-.+||+.+|++.+.+-+.+.++..+|.|.- ..|.+.+.+++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~~ 220 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISDSE 220 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcCHH
Confidence 578999999999999999999999999998743 45778887653
No 417
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=32.60 E-value=39 Score=28.29 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=37.0
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
.++-++||+.+|++.+.|-+.+.++..+|.|. ...|.|.+.+++
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~~ 182 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIA----TAYRRVYLLDLA 182 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE----EETTEEEECCHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCHH
Confidence 47889999999999999999999999999874 335778877653
No 418
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=32.46 E-value=70 Score=27.71 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 334 IEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 334 ~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
.+.+++.|+..-+..-+.|=.+++-..||+.||+|..-|-.-|..+-.+|.|.-+ +..|+.+..
T Consensus 18 ~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~--~~~G~~V~~ 81 (222)
T 3ihu_A 18 SDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ--RHRGAVIRR 81 (222)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--STTCEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCCeEEec
Confidence 3556777776666666788899999999999999999999999999999998654 555665543
No 419
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.92 E-value=1.5e+02 Score=25.25 Aligned_cols=55 Identities=11% Similarity=-0.017 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHhhcCCC--c------------cchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEP--E------------KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~--~------------~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (428)
..|+..|+..++++++.+. + +.+...=-..-++++|.+.|+-++++.+|...-..
T Consensus 75 lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 75 KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 4579999999999995322 1 01112334556799999999999999999877654
No 420
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=31.69 E-value=81 Score=27.95 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
..+++.++..-...-..|=.++ +-..||+.+|++..-|.+-+..|..+|.|.. -+..|+.+..
T Consensus 13 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~ 76 (243)
T 2wv0_A 13 YQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYR--LKGRGTFVSK 76 (243)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CTTSCEEECC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--eCCCeEEEeC
Confidence 3455555544444445676788 8999999999999999999999999999864 3566776644
No 421
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=31.36 E-value=42 Score=25.19 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=24.5
Q ss_pred HHHHHHhhccccccchhhHHhHhCCChHHHHHHHH
Q 014255 343 TQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLV 377 (428)
Q Consensus 343 ~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~ 377 (428)
...|+.++.... +++.+||+.+|+|..-|-..|.
T Consensus 9 ~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 9 TIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 344555554433 8999999999999887776653
No 422
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=31.32 E-value=18 Score=29.95 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=35.6
Q ss_pred hhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 349 ~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
.+.|-.+++...||+.+|+|...|-.-+.+|-..|.|.+
T Consensus 21 ~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 21 ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 567888899999999999999999999999999999974
No 423
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=31.28 E-value=80 Score=28.57 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
..+++.|+..-...-..|=.++ +-..||+.+|++..-|.+-+..|..+|.|.. -+..|+.+..
T Consensus 32 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~ 95 (272)
T 3eet_A 32 LRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEG--RSGSGTYVRE 95 (272)
T ss_dssp HHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CCC--EEECC
T ss_pred HHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCceEEEec
Confidence 4455555544444456677888 8999999999999999999999999999753 2444555543
No 424
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=31.20 E-value=18 Score=28.58 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=34.7
Q ss_pred HHHHHHHHhhccccccchhhHHhHhCCC-hHHHHHHHHHHHHcCceeEEEec
Q 014255 341 VRTQVLLKLIKPYTRIRIPFISKELNVP-EKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 341 i~~~~l~~~~~pYs~I~l~~iA~~l~l~-~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
.+...|.+++.|=-+=.|+.|+- ..-. ...||..|.+|...|.|.++||-
T Consensus 38 ~r~~iL~qiLtpeAreRL~rI~l-VKPEkA~~VE~~LI~lAq~Gqi~~kIte 88 (118)
T 2cru_A 38 MRNSILAQVLDQSARARLSNLAL-VKPEKTKAVENYLIQMARYGQLSEKVSE 88 (118)
T ss_dssp HHHHHHHHHBCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHTCCCSCBCH
T ss_pred HHHHHHHHHcCHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 34556677777765555555542 1111 36899999999999999999873
No 425
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=31.13 E-value=87 Score=27.58 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
..+++.|+..-+..-+.|=.+++-..||+.||+|..-|-.-|..|-.+|.|.-+ +..|+.+.
T Consensus 31 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~ 92 (239)
T 2hs5_A 31 TRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHE--LNRGVFVR 92 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCeeEEe
Confidence 456666666655656778889999999999999999999999999999998643 45565554
No 426
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=30.92 E-value=70 Score=27.26 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=35.1
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
.++-++||+.+|++.+.|-+.+.+|-.+|.|.- ..|.|.+.++
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~ 229 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHA----RGKTVVLYGT 229 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEEEC-
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE----CCCEEEEeeC
Confidence 478899999999999999999999999998752 3466666554
No 427
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=30.91 E-value=86 Score=23.64 Aligned_cols=65 Identities=12% Similarity=0.010 Sum_probs=46.5
Q ss_pred HHHHhhccccccchhhHHh-HhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCCccchHHHHHHHH
Q 014255 345 VLLKLIKPYTRIRIPFISK-ELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKW 414 (428)
Q Consensus 345 ~l~~~~~pYs~I~l~~iA~-~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w 414 (428)
+++..+.-...++.++||+ .++++..-+-+-|-.|+.+|.+. -+..+ |..+... .....+...-|
T Consensus 20 siL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe--~~~~D--l~LT~~G-~~~l~~a~~~W 85 (95)
T 1bja_A 20 TILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE--KSGDG--LIITGEA-QDIISNAATLY 85 (95)
T ss_dssp HHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE--EETTE--EEECHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee--cCCCC--eeeCHhH-HHHHHHHHHHH
Confidence 4444443334889999999 99999999999999999999998 44333 6666443 22344555678
No 428
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=30.82 E-value=38 Score=27.22 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVS 378 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~ 378 (428)
|-+.+++.||..++++.++||..+..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999987654
No 429
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=30.48 E-value=1.1e+02 Score=23.11 Aligned_cols=66 Identities=8% Similarity=-0.011 Sum_probs=41.2
Q ss_pred hHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC----EEEEccCCc--cchHHHHHHHHHHHHHHHHHhh
Q 014255 360 FISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR----LLERGDRSK--GMKKYTAIDKWNSQLRKKRRDN 425 (428)
Q Consensus 360 ~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g----~v~~~~~~~--~~~~~~~l~~w~~~v~~l~~~~ 425 (428)
.|++.++++...+=..|.+|-.+|.|...-+..+| +..+++.-. .....+....+...+++++...
T Consensus 31 ~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~~~~i~~~l~~~ 102 (108)
T 3l7w_A 31 TIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVYKMTIDGIVEGR 102 (108)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 34445789999999999999999999887765444 233443221 1112233445556666666543
No 430
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=30.15 E-value=49 Score=22.97 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=24.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
.-.+..+||+.+|+|..-|...+.+++.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5689999999999999999988877653
No 431
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=30.08 E-value=87 Score=27.31 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEE
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (428)
..+++.|+..-+..-..|=.++ +-..||+.||+|-.-|-.-|..+..+|.|.- -+..|+.+.
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--ecCCCcEee
Confidence 4455666655555556788899 8999999999999999999999999999864 345566554
No 432
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.05 E-value=2.7e+02 Score=24.04 Aligned_cols=83 Identities=11% Similarity=0.133 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHH---hhhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHH
Q 014255 117 EFYQTTLKALEE---AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 193 (428)
Q Consensus 117 ~~~~~~le~l~~---~~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~ 193 (428)
.+++.|...+.. -.|+-.++++-++.++.. ..++..++.+++.-+...-- +.....+|..-+.++-
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~I----------G~~~AlfYe~wA~~lE 126 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGI----------GTKLSLFYEEFSKLLE 126 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTS----------STTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCC----------cHHHHHHHHHHHHHHH
Confidence 344444443333 245667778877777766 34446788888888887632 1334567777788899
Q ss_pred hhcCHHHHHHHHHHHHh
Q 014255 194 ETKNNKKLKQLYQKALA 210 (428)
Q Consensus 194 ~~~d~~ka~~~l~~a~~ 210 (428)
..|++.+|...|..+..
T Consensus 127 ~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 127 NAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998864
No 433
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=28.92 E-value=79 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=24.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
.-.+..+||..+|+++.-|+..+.++..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5668999999999999999999988754
No 434
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=28.59 E-value=97 Score=23.96 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=42.1
Q ss_pred hccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 350 ~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+..|+-||..-+++++++...-+...|-.|...|.|.-..-+....|+..
T Consensus 54 Vpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr 103 (108)
T 3u5c_Z 54 VPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTR 103 (108)
T ss_dssp CSSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEEC
T ss_pred ccCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEec
Confidence 44599999999999999999999999999999999987765555555554
No 435
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=28.01 E-value=56 Score=22.10 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=24.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
+.-.+..+||+.+|+|+..|...+.++..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45679999999999999999888877653
No 436
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=28.01 E-value=2.2e+02 Score=24.40 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=34.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEec
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
...+..+||+.+|++...+-..|..|...|.|...-+.
T Consensus 27 ~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 27 RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEK 64 (202)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeec
Confidence 56899999999999999999999999999999887763
No 437
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=27.69 E-value=72 Score=27.60 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=37.0
Q ss_pred ccchhhHHhHhCCCh-HHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 355 RIRIPFISKELNVPE-KDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~-~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
.++-.+||+.+|++. +.|-+.+.+|-.+|.|.- ..|.|.+.+++
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~----~~~~i~I~d~~ 213 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY----KNSCFYVQNLD 213 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe----cCCEEEEeCHH
Confidence 578899999999999 899999999999998743 35778887654
No 438
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=27.57 E-value=98 Score=25.12 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=43.7
Q ss_pred hccc-cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 350 IKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 350 ~~pY-s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
+..| +-||...|+++|+++..-+...|-.|...|.|.-..-+....|+..
T Consensus 57 Vpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTr 107 (143)
T 2xzm_8 57 PSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSV 107 (143)
T ss_dssp CTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEE
T ss_pred hcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEec
Confidence 4458 9999999999999999999999999999999988776666666665
No 439
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=27.36 E-value=1.2e+02 Score=26.80 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 336 ~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
.+++.|+..-...-..|=.++ +-..||+.+|++..-|.+-+..+..+|.|.- -+..|+.+..
T Consensus 9 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~--~~g~G~~V~~ 71 (239)
T 3bwg_A 9 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQ--VRGSGIFVRK 71 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--eCCceEEEec
Confidence 344445444444445677889 8999999999999999999999999999864 3566766543
No 440
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=27.25 E-value=66 Score=25.08 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=29.6
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
-.+..++|..+|++...+..++..+...|.+..
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 347889999999999999999999999998754
No 441
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=27.17 E-value=73 Score=28.14 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=34.3
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
.++-.+||..+|++.+.|-+.+.+|-.+|.|. ...|.|.+.+
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~d 258 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVYG 258 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEEC-
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----EcCCEEEEEe
Confidence 67889999999999999999999999999875 2345565543
No 442
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.95 E-value=2.7e+02 Score=23.09 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHh---hhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHH
Q 014255 115 LREFYQTTLKALEEA---KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (428)
Q Consensus 115 ~~~~~~~~le~l~~~---~~~kl~lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l 191 (428)
+..+++.|...+... .|+-.++|+-++++... +++.+++..+...-. +.....+|..=+.+
T Consensus 42 L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~I----------G~~~AlfY~~wA~~ 105 (164)
T 2wvi_A 42 MSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGI----------GVSLAQFYISWAEE 105 (164)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTS----------STTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCc----------chhhHHHHHHHHHH
Confidence 344556655554432 45556777777777653 335567777766522 23356677777888
Q ss_pred HHhhcCHHHHHHHHHHHHh
Q 014255 192 YTETKNNKKLKQLYQKALA 210 (428)
Q Consensus 192 ~~~~~d~~ka~~~l~~a~~ 210 (428)
+-..|++.+|...|..+..
T Consensus 106 lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 106 YEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998864
No 443
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.89 E-value=1.3e+02 Score=30.08 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=52.1
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014255 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (428)
Q Consensus 137 r~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~ 209 (428)
.+...|.+.|+..+.|+.|.+++.+.. .+... +. ....+.++....+++...++|.+|...+..|.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-~s----n~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTD-VS----SSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-SC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-CC----HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455578889999999999999999875 22211 12 25678888889999999999999999999884
No 444
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=26.70 E-value=54 Score=28.16 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=37.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
-.++-.+||+.+|++.+.+-+.+.++-.+|.|. ...|.|.+.+++
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~~ 218 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILE----VSPRSVTLLDLA 218 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSCEEESCHH
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----ecCCEEEEeCHH
Confidence 367899999999999999999999999999885 235677776653
No 445
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=26.56 E-value=33 Score=21.09 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=22.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSL 379 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~l 379 (428)
.-.+...||+.+|++..-|..++.+.
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 45689999999999999998887654
No 446
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=26.40 E-value=1.7e+02 Score=30.17 Aligned_cols=83 Identities=10% Similarity=0.053 Sum_probs=48.1
Q ss_pred HHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc------cCCC
Q 014255 144 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS------AIPH 217 (428)
Q Consensus 144 ~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~~~------~i~~ 217 (428)
.+.+..|++++|.++.+.+ ++ . ...-..++++...+++..|...|.++..... ...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~----------~~----~---~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~ 722 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE----------SA----E---MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN 722 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC----------CC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred ehhhhcCCHHHHHHHHHhh----------Cc----H---hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC
Confidence 4557789999998876433 12 1 2333445678888888888888887642211 0111
Q ss_pred hhhHHHHHHhhhHhHHhhhcHHHHHHHHHH
Q 014255 218 PRIMGIIRECGGKMHMAERQWADAATDFFE 247 (428)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~e 247 (428)
+... ...+.+....+++..|...|+.
T Consensus 723 ~~~~----~~~~~~a~~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 723 KEGL----VTLAKDAETTGKFNLAFNAYWI 748 (814)
T ss_dssp HHHH----HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHcCchHHHHHHHHH
Confidence 1111 1224455567777777766655
No 447
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=26.32 E-value=54 Score=23.77 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
.-.|+.+||+.+|+|+.-|...+.+++.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999888764
No 448
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.01 E-value=1.7e+02 Score=20.47 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=35.6
Q ss_pred HHHHhhccc--cccchhhHHhHh-----CCChHHHHHHHHHHHHcCceeE
Q 014255 345 VLLKLIKPY--TRIRIPFISKEL-----NVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 345 ~l~~~~~pY--s~I~l~~iA~~l-----~l~~~~vE~~l~~lI~~g~i~g 387 (428)
.++.++... ..++..+|++.+ +++..-|-+.|-.|...|.|.-
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 345554333 579999999999 9999999999999999999874
No 449
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=25.78 E-value=54 Score=28.00 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=34.5
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (428)
.++-.+||+.+|++.+.+-+.+.++..+|.|.- + ..+++.+.++
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~--~-~~~i~~i~d~ 206 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISR--Q-GRGHYTIPNL 206 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE--C-STTCEECSSH
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE--c-CCceEEEcCH
Confidence 478899999999999999999999999998743 1 2233555444
No 450
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=25.77 E-value=3.8e+02 Score=24.39 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=73.9
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhhcCCCcc-chhhHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHhhhhhhh--
Q 014255 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLG--KYKEMMDAYREMLTYIKSAVTRN-- 91 (428)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~-~~~~~k~l~~l~~l~~~~~--~~~~l~e~~~~l~~~~~~~~~k~-- 91 (428)
.+.-|..|.--...-.++|++.+.+++..+|+. ..|..|. .++...| ++++.++++..++... |.....
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~-----~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~ 107 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRF-----NILKNLPNRNLYDELDWCEEIALDN-EKNYQIWN 107 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHH-----HHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHH-----HHHHHcccccHHHHHHHHHHHHHHC-cccHHHHH
Confidence 344444444333344579999999999999864 5675553 4445566 9999999999999875 432211
Q ss_pred HHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhccHH--HHHHHHHHHHhh
Q 014255 92 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYG--RMSKILKELHKS 165 (428)
Q Consensus 92 ~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g~~~--~A~~~l~el~~~ 165 (428)
.-..+++.++......+ ..+...++++.+++. . ..+--.|. ..+-+....|.++ +++++..++...
T Consensus 108 ~R~~iL~~~~~~l~~~~--~~~~EL~~~~~~l~~-~-pkny~aW~----~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDF--DPYREFDILEAMLSS-D-PKNHHVWS----YRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HHHHHHHHHHHHTTTCC--CTHHHHHHHHHHHHH-C-TTCHHHHH----HHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccC--CHHHHHHHHHHHHHh-C-CCCHHHHH----HHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 11233333334432101 233344555555541 1 12222333 1112233345666 777777777655
No 451
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=25.70 E-value=32 Score=25.19 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCceeEEEec
Q 014255 370 KDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 370 ~~vE~~l~~lI~~g~i~g~IDq 391 (428)
+.||..|.+|...|.|.++||.
T Consensus 37 ~~VE~~Li~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 37 EQIELQLIQLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHHHHHHCCSSCCCCCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 5899999999999999999874
No 452
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=25.61 E-value=57 Score=27.75 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=36.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecC-CCEEEEccC
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV-NRLLERGDR 401 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~-~g~v~~~~~ 401 (428)
-.++-.+||+.+|++.+.+-+.+.++..+|.| ... .|.+.+.++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~~i~i~d~ 210 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGIL----ERVNQRTLLLKDL 210 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE----EESSSSEEEESCH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE----EEcCCCEEEEcCH
Confidence 36888999999999999999999999999886 343 567777665
No 453
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=25.49 E-value=1.8e+02 Score=29.40 Aligned_cols=68 Identities=12% Similarity=0.284 Sum_probs=43.4
Q ss_pred HHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 312 EFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 312 ~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
.|+++...+..--.-||.+...+..-......-++..+.+-|.. .-..-.+-+.-+++++|..|.++.
T Consensus 496 ~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~-~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 496 GFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKD-SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCCcccCCHHHHHHHHHHhc
Confidence 35555444433233588887655554444555566666666766 234556678889999999999875
No 454
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=25.42 E-value=2.4e+02 Score=21.97 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccchhhHHhH-----hCCChHHHHHHHHHHHHcCceeEEEec
Q 014255 329 FIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKE-----LNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 329 ~l~~~~~~l~~~i~~~~l~~~~~pYs~I~l~~iA~~-----l~l~~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
.+......+........++.++. ....--.|.+. ++++...+=..|.+|-.+|.|...-+.
T Consensus 9 ~~~~~~~~l~~g~l~~~IL~lL~--~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~ 74 (123)
T 3ri2_A 9 IVSSMVLELRRGTLVMLVLSQLR--EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDN 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHhCcHHHHHHHHHc--CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEecc
Confidence 33444455555555566666653 33333334433 588999999999999999999887654
No 455
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=24.74 E-value=1.3e+02 Score=27.70 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=35.6
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecC
Q 014255 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (428)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~ 392 (428)
...++.++||+.||+|..-|-+.|..+-..|.+.-+|..+
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~ 58 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYD 58 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCC
Confidence 3679999999999999999999999999999998666544
No 456
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=24.22 E-value=89 Score=29.85 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-----hccccccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEe
Q 014255 331 RNYIEDLLKNVRTQVLLKL-----IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (428)
Q Consensus 331 ~~~~~~l~~~i~~~~l~~~-----~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~ID 390 (428)
+.+...+...+|..-+-+= -++|.+.+...+|+.+|++...++..+.+|-..|..-++.-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3ez9_A 14 ALRASALLKAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNKKQ 78 (403)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhccccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCC
Confidence 3444555555555555422 24578999999999999999999999999888888877744
No 457
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=24.22 E-value=4.4e+02 Score=24.62 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014255 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (428)
Q Consensus 178 ~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a 208 (428)
....+++.+. +|...|+..+|..+++..
T Consensus 301 s~~al~~l~d---~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 301 VPLALEYLAD---SFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp CHHHHHHHHH---HHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHH---HHHhcCCHHHHHHHHHHH
Confidence 4555666444 677889999988887654
No 458
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=24.14 E-value=3.2e+02 Score=22.95 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=14.7
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhh
Q 014255 141 KLCKIWFDMGEYGRMSKILKELHKS 165 (428)
Q Consensus 141 ~La~l~~~~g~~~~A~~~l~el~~~ 165 (428)
+||..-+..|+++-|.+.++.++..
T Consensus 39 ~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 39 RLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCChHHHHHHHHHhCCH
Confidence 5566666666666666665555443
No 459
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=24.14 E-value=1.2e+02 Score=25.75 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=30.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeE
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g 387 (428)
..|+.+||+.+|++..-|-..|..|-..|.|..
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEe
Confidence 479999999999998899999999999999854
No 460
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=24.10 E-value=94 Score=28.88 Aligned_cols=44 Identities=9% Similarity=-0.056 Sum_probs=36.7
Q ss_pred HHHHHHhhccccccchhhHHhHhCCChHHHHHHHHHHHHcCcee
Q 014255 343 TQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 343 ~~~l~~~~~pYs~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~ 386 (428)
...|+.++..-..++.++||+.+++|..-|.+.|..|-..|.+-
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 33456666656789999999999999999999999999988764
No 461
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=23.94 E-value=1.5e+02 Score=25.91 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhcccccc-chhhHHhHhCCChHHHHHHHHHHHHcCceeE--EEecCCCEEEEc
Q 014255 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNRLLERG 399 (428)
Q Consensus 335 ~~l~~~i~~~~l~~~~~pYs~I-~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g--~IDq~~g~v~~~ 399 (428)
+.+++.|+..-+..-+.|=.++ +-..||+.||+|..-|-.-|..+-.+|.|.- +-....|+.+..
T Consensus 7 ~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~ 74 (239)
T 2di3_A 7 ESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITA 74 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeC
Confidence 4566667666666667788899 5779999999999999999999999999875 322226766554
No 462
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.77 E-value=2.9e+02 Score=22.40 Aligned_cols=64 Identities=9% Similarity=-0.030 Sum_probs=43.5
Q ss_pred HHhHHHHHHHHhhc---cHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 137 KTNLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 137 r~~~~La~l~~~~g---~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
.+.+++|--+.... +..++..+|+++....+ +. .-+.+...+--+.++|||.+|+.+.+....+
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~-----~~------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-----SR------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC-----ST------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-----cc------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45556666666554 45578889999888521 11 2344445556788999999999998877654
No 463
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=23.62 E-value=34 Score=25.05 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCceeEEEec
Q 014255 370 KDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 370 ~~vE~~l~~lI~~g~i~g~IDq 391 (428)
..||..|.+|...|.|.++||-
T Consensus 35 ~~VE~~Li~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 35 QAVETYLKKLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHHHHHHHTCCSCCBCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 5899999999999999999873
No 464
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=23.54 E-value=2.6e+02 Score=25.81 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=49.6
Q ss_pred HhHHHHHHHHhh-----ccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhh
Q 014255 138 TNLKLCKIWFDM-----GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE-TKNNKKLKQLYQKALAI 211 (428)
Q Consensus 138 ~~~~La~l~~~~-----g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~-~~d~~ka~~~l~~a~~~ 211 (428)
...-||.+|... |+.++|.+++++......+ ..++.+..-++.+.. .+++..+..+++++...
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-----------~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-----------HDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-----------TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-----------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 455788888884 9999999999999999542 113444455666666 59999999999999876
Q ss_pred hcc
Q 014255 212 KSA 214 (428)
Q Consensus 212 ~~~ 214 (428)
...
T Consensus 270 ~p~ 272 (301)
T 3u64_A 270 DPE 272 (301)
T ss_dssp CGG
T ss_pred CCC
Confidence 544
No 465
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=23.35 E-value=1e+02 Score=32.61 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 014255 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREM 80 (428)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l 80 (428)
+++++-|++.-++.++..|+. |++=..|+++|...|+|+.|+=.+..+
T Consensus 350 K~~~elAL~~Ak~AV~~aPse----F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALDS----FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhcCchh----hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 567999999999999887754 777799999999999999999777665
No 466
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=23.17 E-value=1.4e+02 Score=22.15 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=33.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHH
Q 014255 299 TNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNV 341 (428)
Q Consensus 299 ~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~l~~~i 341 (428)
.++.+.|-.+|-..........+..+..|+.+...+..|.+.+
T Consensus 50 ~~IG~~fggrdHsTV~ha~~ki~~~~~~d~~~~~~i~~l~~~l 92 (94)
T 1j1v_A 50 PEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTL 92 (94)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3667778778888777788887778889999988888877665
No 467
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=23.04 E-value=76 Score=26.30 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=35.6
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCC---EEEEcc
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (428)
.++..+||+.++++..-|-..|-+|...|.|.-.-|..++ .|.+++
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~ 134 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTP 134 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECH
Confidence 4899999999999999999999999999999766555444 455554
No 468
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=22.87 E-value=1.4e+02 Score=19.67 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=27.6
Q ss_pred chhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEc
Q 014255 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (428)
Q Consensus 357 ~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (428)
.|.+||+.++=+++.+-+.+..=+ | -.|.|| +|.+++.
T Consensus 13 Nf~~Ia~~L~R~p~hv~ky~~~EL--G-t~g~id--~~rlii~ 50 (52)
T 1k8b_A 13 NFRELAKAVNRDEEFFAKYLLKET--G-SAGNLE--GGRLILQ 50 (52)
T ss_dssp CHHHHHHHHHTCHHHHHHHHHHHH--S-SEEEEE--TTEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHh--C-CCeeec--CCEEEEe
Confidence 688999999999998877766422 2 268888 6666553
No 469
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=22.67 E-value=3e+02 Score=22.06 Aligned_cols=66 Identities=11% Similarity=-0.024 Sum_probs=46.4
Q ss_pred HHHHhHHHHHHHHhhc---cHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 135 WFKTNLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 135 ~lr~~~~La~l~~~~g---~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
...+.+++|--+.... +..++..+|.++.+..+ ...-+.+...+--+.++|||.+|+.+.+....+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~-----------~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-----------SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-----------GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-----------chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3356667777666554 55678899999887631 123455555566788999999999998877643
No 470
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=22.47 E-value=1.6e+02 Score=21.06 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=24.2
Q ss_pred ccccccchhhHHhHhC-----------CChHHHHHHHHHHHHcCcee
Q 014255 351 KPYTRIRIPFISKELN-----------VPEKDVEQLLVSLILDNRID 386 (428)
Q Consensus 351 ~pYs~I~l~~iA~~l~-----------l~~~~vE~~l~~lI~~g~i~ 386 (428)
..+.++.+++|...++ ++.++++..|.+++.+|++.
T Consensus 18 tN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 18 TNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp HHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred hcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 3345555555544432 34478899999999999875
No 471
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=22.21 E-value=3.2e+02 Score=30.10 Aligned_cols=123 Identities=13% Similarity=0.010 Sum_probs=70.7
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcc--h---------hhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 014255 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD--Q---------KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (428)
Q Consensus 139 ~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d--~---------~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~ 207 (428)
.+-+|..++..|++++|..+.++.-........... . .....+..+|...+.++...+-++.+-.....
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 468999999999999999888765433211100000 0 00122446778888888888888887777666
Q ss_pred HHhhhccCCChhhHHHHHHhhhHhHHhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 014255 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268 (428)
Q Consensus 208 a~~~~~~i~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l~y~~ 268 (428)
|...... .++.+...++..-=..++..++|.+|+...... .....+..+|+.++
T Consensus 925 Ai~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~------pd~~~r~~cLr~LV 978 (1139)
T 4fhn_B 925 ADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVL------STTPLKKSCLLDFV 978 (1139)
T ss_dssp HHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH------HHSSSCHHHHHHHH
T ss_pred HHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6543222 234444333332223455667777776665432 11124556777654
No 472
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.00 E-value=2.2e+02 Score=27.99 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=57.0
Q ss_pred HHHhHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014255 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (428)
Q Consensus 136 lr~~~~La~l~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~e~~l~~~~~d~~ka~~~l~~a~~~ 211 (428)
+-+...|.++|+..|+..-|..++..+.....-+ . .+....+..+.+.-...+++...++|.+|...+..|-..
T Consensus 176 l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p-~-~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 176 LYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLA-H-FNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCS-C-GGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCc-C-hhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3555678899999999999999999887753211 1 121225678889889999999999999999999998543
No 473
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.98 E-value=97 Score=24.61 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=25.2
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHHH
Q 014255 352 PYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (428)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~~vE~~l~~lI 380 (428)
.+.-.+..+||+.+|+|+..|...+.++.
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45778999999999999999998887765
No 474
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.92 E-value=1.1e+02 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=23.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHH
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~ 381 (428)
.-.+..+||+.+|+++.-|...+.++..
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5668899999999999999988877654
No 475
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=21.86 E-value=3.6e+02 Score=22.66 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=14.5
Q ss_pred HHHhhccHHHHHHHHHHH
Q 014255 145 IWFDMGEYGRMSKILKEL 162 (428)
Q Consensus 145 l~~~~g~~~~A~~~l~el 162 (428)
+-++.|+++.|.++.+++
T Consensus 14 LAL~lg~l~~A~e~a~~l 31 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL 31 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh
Confidence 456789999999988776
No 476
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=21.56 E-value=1.2e+02 Score=25.98 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=35.6
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEecCCCEEEEccCC
Q 014255 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (428)
Q Consensus 355 ~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (428)
.++-.+||..+|++.+.|-+.+.++-.+| | . ...|.|.+.+++
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~--~~~~~i~I~d~~ 220 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V--T--VKRNHAEIEDIA 220 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--E--CCTTEEEESCHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--E--eeCCEEEEcCHH
Confidence 35568999999999999999999999999 5 3 346788887664
No 477
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=20.57 E-value=6.4e+02 Score=25.09 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHhhcCCCcc-chhhHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 014255 31 DPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLGK----------YKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (428)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~-~~~~~k~l~~l~~l~~~~~~----------~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (428)
-.++|++.+.+++..+|+. ..|..|. .++...|+ ++++++.+...+... + |++.+=.-+.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~-----~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-p---K~y~aW~hR~ 114 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRR-----EVLQHLETEKSPEESAALVKAELGFLESCLRVN-P---KSYGTWHHRC 114 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHH-----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-T---TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHH-----HHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-C---CCHHHHHHHH
Confidence 3589999999999999864 5565542 33333445 899999999998865 4 4443332222
Q ss_pred -HHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHhhc-cHHHHHHHHHHHHhh
Q 014255 100 -IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMG-EYGRMSKILKELHKS 165 (428)
Q Consensus 100 -il~~~~~~~~~~~~~~~~~~~~~le~l~~~~~~kl~lr~~~~La~l~~~~g-~~~~A~~~l~el~~~ 165 (428)
++..+.. ++ .+...++++.+++. .. .+-.-|- ..+-+....| .++++.+...+.-..
T Consensus 115 w~l~~l~~-~~--~~~el~~~~k~l~~-d~-~N~~aW~----~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 115 WLLSRLPE-PN--WARELELCARFLEA-DE-RNFHCWD----YRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp HHHHTCSS-CC--HHHHHHHHHHHHHH-CT-TCHHHHH----HHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred HHHHHccc-cc--HHHHHHHHHHHHhh-cc-ccccHHH----HHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 2333321 11 33445566665552 11 2222332 1122333456 778887776666444
No 478
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=20.56 E-value=2.4e+02 Score=20.25 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=40.9
Q ss_pred HhhccccccchhhHHhHhCC-ChHHHHHHHHHHHHcCceeEEEecCCCEEEEcc
Q 014255 348 KLIKPYTRIRIPFISKELNV-PEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (428)
Q Consensus 348 ~~~~pYs~I~l~~iA~~l~l-~~~~vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (428)
+++..-...+++.|++..++ +.+++-.-|.=+-.+++|. +++.+|.+.+.-
T Consensus 17 ~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~--~~~~~~~l~v~l 68 (77)
T 2l01_A 17 EALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV--TSEVEGEIFVKL 68 (77)
T ss_dssp HHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEE--EEEETTEEEEEE
T ss_pred HHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceE--EEeeCCEEEEEe
Confidence 33334478999999999999 9999988888888899874 777788777753
No 479
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=20.08 E-value=2.7e+02 Score=20.48 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=33.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHHHHcCceeEEEec
Q 014255 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (428)
Q Consensus 354 s~I~l~~iA~~l~l~~~~vE~~l~~lI~~g~i~g~IDq 391 (428)
.-|+..+||+.++++...|-..|-+|...|.|.-.-+.
T Consensus 35 ~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~ 72 (91)
T 2dk5_A 35 KGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSV 72 (91)
T ss_dssp TCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 47999999999999999999999999999999844333
Done!