BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014256
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 78 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
K N+ FK K ++ AI YS++I L+P+ A+ Y NR++AYL+ + A D T A+ L
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 196
D +YIK Y RRA + LGK + ++ D E ++++P +++ K + E + +++ F++A
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 129
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 78 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
K N+ FK K ++ AI YS++I L+P+ A+ Y NR++AYL+ + A D T A+ L
Sbjct: 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 196
D +YIK Y RRA + LGK + ++ D E ++++P +++ K + E + +++ F++A
Sbjct: 77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 136
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 78 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
K N+ FK K ++ AI YS++I L+P+ A+ Y NR++AYL+ + A +D T A+ L
Sbjct: 25 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIEL 84
Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 187
D +YIK Y RRA + LGK + ++ D E ++++P +++ K + E +
Sbjct: 85 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 135
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 65 LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 123
L +EE + +A K GNE K + F+ A+ Y ++I L+P AV + NRA AY KL +
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 124 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL-- 181
A DC A+ +D Y KAY R A L K E++ + AL L+P N+ K L
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
Query: 182 AEVK 185
AE+K
Sbjct: 123 AELK 126
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
A + K LGN +KQ +++AI+ Y +++ L P A A+ N AY K +Q+A + +
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
AL LD KA+ RR A + G +++IED + AL L+P N + K+ L K
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 48 GNSYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSP- 105
GN+Y + D I E P+ A++ LGN +KQ +++AI+ Y +++ L P
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 106 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155
A A+ R AY K +Q+A +D +AL LD KA A+++ G
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTE 132
A EK GNE FK+ + A+ Y+ ++ P A+ Y+NRA KL FQ A DDC
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 133 ALNLDDRYIKAYSRRA---TARKELGKLKESIEDSEFALRLEPQNQEIKK 179
+ LD ++IK Y R+A A +E K + + ED AL+++P N+E ++
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED---ALQVDPSNEEARE 119
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 70 STPDATSEKEL---GNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR 122
+TP A+S ++L GNE FK + A+ Y++++ L T AV + NRA +LKL
Sbjct: 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED 80
Query: 123 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
+ +AE + ++A+ D +KA RR+ A ++LG+L +++ D + + LEP+N+ ++ L
Sbjct: 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140
Query: 183 EV 184
+
Sbjct: 141 NI 142
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 71 TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDD 129
+P A KE GN F +K+ EA CY R+I +P AV Y NRA+ YLK+++ ++A D
Sbjct: 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60
Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170
C AL LD + +KA+ + E+ E+I + + A L
Sbjct: 61 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 71 TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDD 129
+P A KE GN F +K+ EA CY R+I +P AV Y NRA+ YLK+++ ++A D
Sbjct: 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 65
Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170
C AL LD + +KA+ + E+ E+I + + A L
Sbjct: 66 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 72 PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 129
PD A K GNECF++ + +A+ Y+ +I +P A Y+NRA Y KL FQ A D
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
C E + L+ +IK Y+R+A A + + ++++ + AL L+ +E
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE 119
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 80 LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
LGN +KQ + EAI+ Y +++ L P A A+ N AY K + EA + +AL LD
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
+A+ A + G E+IE + AL L+P N E K+ L K
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 78 KELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
KE GN+ +A+ CYS +I L P V Y+NR+ AY K +Q+A +D + ++L
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
+ K YSR+A A + L + +E+ E L+ E N ++K+ L +++
Sbjct: 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 80 LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
LGN +KQ + EAI+ Y +++ L P A A+ N AY K + EA + +AL L
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
+A+ A + G E+IE + AL L P N E K+ L K
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAK 121
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 48 GNSYSR--NYD-PVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIAL 103
GN+Y + +YD + + +L E P+ A + LGN +KQ + EAI+ Y +++ L
Sbjct: 16 GNAYYKQGDYDEAIEYYQKAL---ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 104 SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 159
P A A+ N AY K + EA + +AL L Y A A++ LG K+
Sbjct: 73 YPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------YPNNAEAKQNLGNAKQ 122
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 80 LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
LGN +KQ + EAI+ Y +++ L P +A A+ N AY K + EA + +AL LD
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
R +A+ A + G E+IE + AL L+P++ E L
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 48 GNSYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSP 105
GN+Y + D I E P A + LGN +KQ + EAI+ Y +++ L P
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 71 TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY-ANRAMAYLKLRRFQEAEDD 129
TP++ K GN +K++ +AID Y+++++++P Y +NRA AY + ++A +D
Sbjct: 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAED 67
Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171
A +D +Y KA+SR AR ++ K + E E + E
Sbjct: 68 AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 72 PDATSEKEL-GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 129
P+ E L G E F + + A+ Y+ I +P A Y+NRA A KL F EA D
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195
Query: 130 CTEALNLDDRYIKAYSRRATAR 151
C +A+ D +++AY R+ATA+
Sbjct: 196 CNKAIEKDPNFVRAYIRKATAQ 217
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 133
A EK GN+ +K ++F EAI+ Y+++ L NRA A + ++ A +A
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDA 64
Query: 134 ------LNLDDRYI-KAYSRRATARKELGKLKESIE 162
+ D + I K+++R A +LG LK++IE
Sbjct: 65 VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE 100
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 63 SSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA------------------LS 104
S + EE A K GN FK++K +EA+ Y +IA L+
Sbjct: 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALA 227
Query: 105 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 164
+ N A +KL+R+ EA C L +++ KA RR A+ ELG++ + +D
Sbjct: 228 VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDF 287
Query: 165 EFALRLEPQNQEIKKQL----AEVKSLYEKE 191
A + P ++ I+++L + K+LY+K+
Sbjct: 288 RKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 81 GNECFKQKKFKEAIDCYSRSIALSPTAVA-------------------YANRAMAYLKLR 121
GNE F QK +KEAID Y ++ T + YAN + YL +
Sbjct: 18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG 77
Query: 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172
EAE+ +E L ++ KA RRA AR KL E+ ED + LR P
Sbjct: 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 133
A + K+ GN+ F+ KK+ +AI Y+ ++ L V Y+N + Y+ + ++ + T+A
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65
Query: 134 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVF 193
L L Y K RRA+A + LGK D+ F L + N + A ++ + E+ +
Sbjct: 66 LELKPDYSKVLLRRASANEGLGKFA----DAMFDLSVLSLNGDFND--ASIEPMLERNLN 119
Query: 194 QKA-SKTLEKYG 204
++A SK EK+G
Sbjct: 120 KQAMSKLKEKFG 131
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 81 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139
G E F + + A+ Y+ I +P A Y+NRA A KL F EA DC +A+ D
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 140 YIKAYSRRATARKELGKLKESIE 162
+++AY R+ATA+ + + ++E
Sbjct: 71 FVRAYIRKATAQIAVKEYASALE 93
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 67 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANR------------- 113
+EE +T KE G FK+ K+K+A+ Y + ++ +++N
Sbjct: 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199
Query: 114 ---AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170
AM +LKL+ F A + C +AL LD K SRR A + + + D + L+L
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259
Query: 171 EPQN-----------QEIKKQLAEVKSLY 188
P N Q I++QLA K LY
Sbjct: 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLY 288
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 77 EKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEAL 134
+KE GN FKQ ++EA+ CY + I P V Y+N+AMA +KL + +A C + L
Sbjct: 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 62 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANR-------- 113
S + +EE +T KE G FK+ K+K+A+ Y + ++ +++N
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 114 --------AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 165
AM +LKL+ F A + C +AL LD K RR A + + + D +
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQ 254
Query: 166 FALRLEPQN-----------QEIKKQLAEVKSLY 188
L+L P N Q I++QLA K LY
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 288
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 78 KELGNECFKQKKFKEAIDCYSRSI----------------ALSPTAVAYA-NRAMAYLKL 120
K +GN FK + ++ AI Y++ + L P A++ N LK+
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ 180
+Q A D C EAL +D KA RRA + L + +++ D + A + P+++ I+ +
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 181 LAEVK 185
L +VK
Sbjct: 347 LLKVK 351
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 78 KELGNECFKQKKFKEAIDCYSRSIAL----------------SPTAVAYANRAMAYLKLR 121
KE G FK K+ +A+ Y + ++ S A+ N AM YLKLR
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
+ +A + C +AL LD K RR A+ + + + + D E L + PQN+ + Q+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391
Query: 182 A 182
+
Sbjct: 392 S 392
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 80 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
LGN + + F A+ Y R+++LSP AV + N A Y + A D A+ L
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
+ AY A A KE G + E+ + ALRL P + + LA +K
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 85 FKQKKFKEAIDCYSRSIALSPTAV-AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA 143
++Q AID Y R+I L P AY N A A + EAED AL L + +
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Query: 144 YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
+ A ++E G ++E++ AL + P+ LA V
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 72 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRR--FQEAEDD 129
PDA L N ++ EA DCY+ ++ L PT N +A +K + +EA
Sbjct: 271 PDAYCN--LANALKEKGSVAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRL 327
Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172
+AL + + A+S A+ ++ GKL+E++ + A+R+ P
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172
+ + RR + T A+ + +AYS KE G+L+E+IE ALRL+P
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
A S L N +Q +EA+ Y +++ + P A A++N A + + QEA E
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 133 ALNLDDRYIKAYSRRATARKEL 154
A+ + + AYS KE+
Sbjct: 365 AIRISPTFADAYSNMGNTLKEM 386
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
A K GN F K F EAI Y +I L P V Y+N + Y+ ++ + T+
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIED 163
AL + + KA RRA+A + LG +++ D
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFD 115
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 78 KELGNECFKQKKFKEAIDCYSRSIAL----------------SPTAVAYANRAMAYLKLR 121
KE G FK K+ +A+ Y + ++ S A+ N AM YLKLR
Sbjct: 272 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
+ +A + C +AL LD K RR A+ + + + + D E L + PQN+ + Q+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
A K GN F K F EAI Y +I L P V Y+N + Y+ ++ + T+
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIED 163
AL + + KA RRA+A + LG +++ D
Sbjct: 81 ALEIKPDHSKALLRRASANESLGNFTDAMFD 111
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 71 TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVA-YANRAMAYLKLRRFQEAEDD 129
T A +EK+LGN +KQK F++A Y ++I L P+ + Y N+A Y + ++F E
Sbjct: 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64
Query: 130 CTEALNL 136
C +A+ +
Sbjct: 65 CEKAVEV 71
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 80 LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
LGN +KQ + EAI+ Y +++ L P A A+ N AY K + EA + +AL LD
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD- 73
Query: 139 RYIKAYSRRATARKELGKLKE 159
A A++ LG K+
Sbjct: 74 ------PNNAEAKQNLGNAKQ 88
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 80 LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
LGN +KQ + EAI+ Y +++ L P +A A+ N AY K + EA + +AL LD
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Query: 139 R 139
R
Sbjct: 69 R 69
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY-ANRAMAYLKLRRFQEAEDDCTE 132
A EKELGN+ +K+K F A+ Y ++ L PT + Y N+A Y + + + + C +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 133 ALNL------DDRYI-KAYSRRATARKELGKLKESI 161
A+ + D R I KAY+R + + K K++I
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY-ANRAMAYLKLRRFQEAEDDCTE 132
A EKELGN+ +K+K F A+ Y ++ L PT + Y N+A Y + + + + C +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 133 ALNL------DDRYI-KAYSRRATARKELGKLKESI 161
A+ + D R I KAY+R + + K K++I
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 71 TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY-ANRAMAYLKLRRFQEAEDD 129
+ A EKELGN+ +K+K F A+ Y ++ L PT + Y N+A Y + + + +
Sbjct: 1 SKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCREL 60
Query: 130 CTEALNL 136
C +A+ +
Sbjct: 61 CEKAIEV 67
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 67 NEESTPDATSEKELGNECFKQK-------KFKEAIDCY--------------SRSIALSP 105
+EE A KE GNE FK+ K+KEA+D + ++I +S
Sbjct: 31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90
Query: 106 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 165
N A Y K + + +A D ++ L +D +KA + A G L+E+ E+
Sbjct: 91 NL----NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146
Query: 166 FALRLEPQNQEIK 178
A L P N +I+
Sbjct: 147 KAASLNPNNLDIR 159
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
A S L N +Q +EA+ Y +++ + P A A++N A + + QEA E
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
A+ + + AYS KE+ ++ +++ A+++ P + LA +
Sbjct: 69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120
>pdb|4FXQ|A Chain A, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4FXQ|B Chain B, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4GF1|A Chain A, Crystal Structure Of Certhrax
pdb|4GF1|B Chain B, Crystal Structure Of Certhrax
Length = 460
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 35/178 (19%)
Query: 84 CFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA 143
+ + +KEA+ Y+ P Y M L RF+E DD E N + K
Sbjct: 183 LYYEPHYKEALKSYA------PALFNY----MLELDQMRFKEISDDVKEK-NKNVLDFKW 231
Query: 144 YSRRATAR--KELGKLKESIEDSEFAL-------RLEPQNQEIKKQLAEVKSLYEKEVFQ 194
Y+R+A + + KE++ SE + + +P N+ ++K Y+ E+
Sbjct: 232 YTRKAESWGVQTFKNWKENLTISEKDIITGYTGSKYDPINEYLRK--------YDGEIIP 283
Query: 195 KASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAE-------IQDLTISKKTENKNLR 245
L+K K ++ ++++ + +QK+ + E + +L KK E+ NLR
Sbjct: 284 NIGGDLDKKSKKALEKIENQIKNLDAALQKSKITENLIVYRRVSELQFGKKYEDYNLR 341
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYAN-RAMAYLKLRRFQEAED--- 128
D LG K + RS+A +P V A + Y++++++ A
Sbjct: 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100
Query: 129 DCTEA--LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
EA +N + R+ R A K LG+ E+I+ + AL L P ++ + +A
Sbjct: 101 KVAEANPINFNVRF-----RLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 80 LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNL-- 136
LG+ C K KK+ EA+D + +++ L P A Y+ + F+ A D AL L
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGLRR 301
Query: 137 DDRY 140
DD +
Sbjct: 302 DDTF 305
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171
N L + + E D C+ LN D +KAY +R A + +E+ D L L+
Sbjct: 65 NYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELD 124
Query: 172 P 172
P
Sbjct: 125 P 125
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171
N L + + E D C+ LN D +KAY +R A + +E+ D L L+
Sbjct: 71 NYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELD 130
Query: 172 P 172
P
Sbjct: 131 P 131
>pdb|4I17|A Chain A, Crystal Structure Of A Hypothetical Protein (Bf2334) From
Bacteroides Fragilis Nctc 9343 At 1.50 A Resolution
Length = 228
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 71 TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAED 128
T D K GN+ K + A + YS + L+ +V N + +++++EA D
Sbjct: 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAAD 63
Query: 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 188
A+ + AY ++ A ++ +E I ++ P N I+K L + L
Sbjct: 64 YFDIAIKKNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKAVPGNATIEK-LYAIYYLK 122
Query: 189 EKEVFQKAS 197
E + FQ+A
Sbjct: 123 EGQKFQQAG 131
>pdb|2Y9Z|B Chain B, Chromatin Remodeling Factor Isw1a(Del_atpase) In Dna
Complex
Length = 624
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 149 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
TARK+L LKE + D F LR Q +++K Q A++K
Sbjct: 573 TARKKLQILKEFLSDYYFILR---QFEQMKVQFADMK 606
>pdb|2Y9Y|B Chain B, Chromatin Remodeling Factor Isw1a(Del_atpase)
Length = 624
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 149 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
TARK+L LKE + D F LR Q +++K Q A++K
Sbjct: 573 TARKKLQILKEFLSDYYFILR---QFEQMKVQFADMK 606
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Query: 79 ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYAN-RAMAYLKLRRFQEAEDDCTEALNLD 137
LG K + RSIA +P + A + Y++++++ A + +
Sbjct: 47 HLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEAN 106
Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
R A LG+ E+I+ + AL L P ++ + +A
Sbjct: 107 PVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 79 ELGNECFKQKKFKEAIDCYSRSIAL--------SPTAVAYANRAMAYLKLRRFQEAEDDC 130
ELG F + + AI+ + ++ L P A +AN AY KL+ + A D
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539
Query: 131 TEALNL 136
+ L L
Sbjct: 540 NQGLLL 545
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,739,046
Number of Sequences: 62578
Number of extensions: 389322
Number of successful extensions: 1006
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 104
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)