Query 014256
Match_columns 428
No_of_seqs 408 out of 2054
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13877 RPAP3_C: Potential Mo 99.9 5E-27 1.1E-31 187.7 9.0 93 302-394 1-94 (94)
2 KOG4648 Uncharacterized conser 99.9 7.6E-26 1.6E-30 211.1 17.3 412 2-426 11-535 (536)
3 KOG0553 TPR repeat-containing 99.8 1.2E-18 2.6E-23 161.7 13.4 119 72-190 79-198 (304)
4 KOG4626 O-linked N-acetylgluco 99.8 4.7E-18 1E-22 169.3 16.3 168 34-203 281-460 (966)
5 KOG4626 O-linked N-acetylgluco 99.8 2.2E-18 4.7E-23 171.7 11.5 165 34-200 315-491 (966)
6 PRK15359 type III secretion sy 99.7 9.6E-16 2.1E-20 132.5 16.5 130 57-191 12-142 (144)
7 KOG0550 Molecular chaperone (D 99.6 1.9E-15 4.1E-20 145.0 12.4 152 39-191 203-370 (486)
8 TIGR00990 3a0801s09 mitochondr 99.6 3.4E-15 7.3E-20 159.1 15.5 155 40-196 332-498 (615)
9 KOG0548 Molecular co-chaperone 99.6 3.9E-15 8.5E-20 147.2 13.2 151 38-188 297-473 (539)
10 TIGR00990 3a0801s09 mitochondr 99.6 7.3E-15 1.6E-19 156.6 14.7 158 43-202 369-545 (615)
11 KOG1126 DNA-binding cell divis 99.6 8.4E-16 1.8E-20 155.3 6.8 167 40-208 354-566 (638)
12 TIGR02552 LcrH_SycD type III s 99.6 1.4E-13 3E-18 117.1 16.1 126 59-186 4-130 (135)
13 KOG4648 Uncharacterized conser 99.6 2.9E-14 6.4E-19 133.9 12.1 97 44-142 102-200 (536)
14 PRK10370 formate-dependent nit 99.5 1.6E-13 3.5E-18 124.9 16.0 127 50-178 51-181 (198)
15 KOG1126 DNA-binding cell divis 99.5 1.8E-14 3.8E-19 145.8 10.4 163 36-200 418-592 (638)
16 KOG4234 TPR repeat-containing 99.5 1.8E-13 3.9E-18 120.0 13.7 106 73-178 94-205 (271)
17 KOG0543 FKBP-type peptidyl-pro 99.5 2.8E-13 6E-18 131.0 15.2 118 74-191 208-341 (397)
18 PRK11189 lipoprotein NlpI; Pro 99.5 4.8E-13 1E-17 129.7 16.7 127 50-176 38-167 (296)
19 PLN03088 SGT1, suppressor of 99.5 6.9E-13 1.5E-17 131.7 16.4 114 77-190 5-119 (356)
20 PRK15363 pathogenicity island 99.5 1.1E-12 2.5E-17 112.5 15.4 114 76-189 37-151 (157)
21 TIGR02521 type_IV_pilW type IV 99.5 8.4E-13 1.8E-17 121.0 15.3 153 41-195 33-199 (234)
22 PRK09782 bacteriophage N4 rece 99.5 7.7E-13 1.7E-17 145.7 17.5 147 50-199 588-745 (987)
23 KOG1155 Anaphase-promoting com 99.5 9.2E-13 2E-17 128.3 15.3 151 41-193 332-494 (559)
24 PRK12370 invasion protein regu 99.5 7.8E-13 1.7E-17 139.1 15.7 143 51-195 274-436 (553)
25 PLN02789 farnesyltranstransfer 99.5 1E-12 2.2E-17 128.0 14.6 169 36-206 34-224 (320)
26 TIGR02521 type_IV_pilW type IV 99.5 2.7E-12 5.8E-17 117.6 16.3 140 37-178 63-206 (234)
27 PRK09782 bacteriophage N4 rece 99.5 1E-12 2.3E-17 144.6 15.7 149 50-200 554-712 (987)
28 PRK12370 invasion protein regu 99.4 1.8E-12 4E-17 136.2 16.0 144 51-196 317-472 (553)
29 PRK15359 type III secretion sy 99.4 9.8E-13 2.1E-17 113.7 11.4 108 46-155 31-140 (144)
30 PRK15174 Vi polysaccharide exp 99.4 1.7E-12 3.7E-17 139.0 15.5 149 50-200 224-387 (656)
31 COG3063 PilF Tfp pilus assembl 99.4 9.8E-13 2.1E-17 118.1 11.3 135 41-177 37-175 (250)
32 KOG0547 Translocase of outer m 99.4 2.3E-12 5E-17 126.2 14.4 157 39-197 326-494 (606)
33 KOG0547 Translocase of outer m 99.4 1.2E-12 2.6E-17 128.2 12.1 163 50-214 372-552 (606)
34 PRK11189 lipoprotein NlpI; Pro 99.4 2.6E-12 5.6E-17 124.6 14.3 128 40-170 65-194 (296)
35 KOG1155 Anaphase-promoting com 99.4 6.1E-12 1.3E-16 122.7 15.2 136 34-171 359-496 (559)
36 PRK15174 Vi polysaccharide exp 99.4 7E-12 1.5E-16 134.2 16.3 151 41-195 248-404 (656)
37 COG3063 PilF Tfp pilus assembl 99.4 1E-11 2.3E-16 111.5 13.0 138 37-177 67-209 (250)
38 PRK11447 cellulose synthase su 99.3 1.1E-11 2.4E-16 141.0 15.9 130 46-177 276-421 (1157)
39 PRK11447 cellulose synthase su 99.3 1.5E-11 3.2E-16 139.9 16.1 166 36-201 300-531 (1157)
40 KOG0548 Molecular co-chaperone 99.3 9.2E-12 2E-16 123.6 11.7 109 77-185 5-114 (539)
41 PRK11788 tetratricopeptide rep 99.3 3.4E-11 7.4E-16 120.8 15.2 154 42-197 110-281 (389)
42 PRK11788 tetratricopeptide rep 99.3 3.3E-11 7.2E-16 120.9 14.3 163 36-198 66-247 (389)
43 TIGR03302 OM_YfiO outer membra 99.3 4.3E-11 9.4E-16 111.8 13.6 134 42-175 36-200 (235)
44 KOG0553 TPR repeat-containing 99.3 2.3E-11 4.9E-16 113.5 10.9 108 49-158 92-200 (304)
45 PRK15179 Vi polysaccharide bio 99.3 8E-11 1.7E-15 125.3 16.4 135 39-175 86-222 (694)
46 KOG1173 Anaphase-promoting com 99.3 3.8E-11 8.2E-16 119.8 11.5 135 50-186 392-534 (611)
47 TIGR02917 PEP_TPR_lipo putativ 99.2 8.4E-11 1.8E-15 129.0 15.2 153 44-198 130-294 (899)
48 CHL00033 ycf3 photosystem I as 99.2 2.4E-10 5.1E-15 101.3 15.3 125 50-174 11-153 (168)
49 TIGR02917 PEP_TPR_lipo putativ 99.2 9.6E-11 2.1E-15 128.5 15.3 125 50-176 681-805 (899)
50 PRK02603 photosystem I assembl 99.2 3.7E-10 8E-15 100.6 15.4 130 60-199 21-154 (172)
51 KOG1125 TPR repeat-containing 99.2 4.7E-11 1E-15 119.6 10.5 118 56-173 412-530 (579)
52 PF13429 TPR_15: Tetratricopep 99.2 3.7E-11 8.1E-16 115.4 9.3 136 50-185 122-258 (280)
53 KOG0550 Molecular chaperone (D 99.2 8.9E-11 1.9E-15 113.3 11.5 155 41-197 171-353 (486)
54 KOG0551 Hsp90 co-chaperone CNS 99.2 1.1E-10 2.4E-15 109.8 11.6 128 50-177 54-189 (390)
55 KOG1173 Anaphase-promoting com 99.2 1.8E-10 3.8E-15 115.1 13.4 150 50-201 324-525 (611)
56 KOG1125 TPR repeat-containing 99.2 1.8E-10 3.9E-15 115.4 13.2 160 35-196 315-529 (579)
57 PLN03088 SGT1, suppressor of 99.2 1.4E-10 3E-15 115.2 11.9 106 48-155 12-118 (356)
58 TIGR02795 tol_pal_ybgF tol-pal 99.2 6.3E-10 1.4E-14 91.7 13.9 103 76-178 4-113 (119)
59 PF13414 TPR_11: TPR repeat; P 99.2 9.3E-11 2E-15 87.7 7.9 66 107-172 3-69 (69)
60 PLN02789 farnesyltranstransfer 99.2 2.2E-10 4.8E-15 111.6 12.6 149 36-186 68-228 (320)
61 PRK10370 formate-dependent nit 99.2 3.7E-10 8E-15 102.8 13.1 112 87-198 52-177 (198)
62 cd00189 TPR Tetratricopeptide 99.2 6E-10 1.3E-14 86.0 12.4 97 77-173 3-100 (100)
63 PRK15179 Vi polysaccharide bio 99.2 6.4E-10 1.4E-14 118.5 16.2 142 55-198 69-221 (694)
64 PRK10049 pgaA outer membrane p 99.2 5.3E-10 1.1E-14 122.1 16.0 155 46-200 279-462 (765)
65 PF13414 TPR_11: TPR repeat; P 99.1 1.9E-10 4E-15 86.0 7.9 65 74-138 3-69 (69)
66 KOG0624 dsRNA-activated protei 99.1 6E-10 1.3E-14 105.3 11.8 104 73-176 37-141 (504)
67 COG5010 TadD Flp pilus assembl 99.1 2.2E-09 4.7E-14 98.5 15.2 156 28-186 56-213 (257)
68 KOG4642 Chaperone-dependent E3 99.1 1.9E-10 4.2E-15 103.7 8.0 99 73-171 9-108 (284)
69 TIGR03302 OM_YfiO outer membra 99.1 1.3E-09 2.8E-14 101.8 14.1 105 73-177 32-151 (235)
70 KOG0376 Serine-threonine phosp 99.1 1.4E-10 2.9E-15 114.5 7.3 116 74-189 4-120 (476)
71 PRK15363 pathogenicity island 99.1 3.5E-10 7.5E-15 97.3 8.8 89 49-139 46-135 (157)
72 PRK10049 pgaA outer membrane p 99.1 2.3E-09 4.9E-14 117.1 17.2 130 50-182 27-157 (765)
73 TIGR02552 LcrH_SycD type III s 99.1 5.4E-10 1.2E-14 94.9 9.6 104 39-144 17-122 (135)
74 KOG0624 dsRNA-activated protei 99.1 5.6E-09 1.2E-13 98.8 15.8 144 34-177 101-259 (504)
75 KOG2076 RNA polymerase III tra 99.1 3E-09 6.6E-14 111.3 15.3 122 49-172 150-272 (895)
76 KOG1129 TPR repeat-containing 99.1 6.6E-10 1.4E-14 104.4 9.2 141 36-178 321-466 (478)
77 COG4783 Putative Zn-dependent 99.0 5.6E-09 1.2E-13 103.3 15.9 138 49-188 317-455 (484)
78 COG4235 Cytochrome c biogenesi 99.0 7.9E-09 1.7E-13 97.1 15.2 134 51-186 135-272 (287)
79 PRK15331 chaperone protein Sic 99.0 5.5E-09 1.2E-13 90.3 12.8 102 76-178 39-141 (165)
80 KOG3060 Uncharacterized conser 99.0 1.4E-08 3.1E-13 92.7 15.8 126 50-177 98-227 (289)
81 KOG0545 Aryl-hydrocarbon recep 99.0 4.4E-09 9.6E-14 95.3 12.3 102 76-177 180-300 (329)
82 PRK14574 hmsH outer membrane p 99.0 6.8E-09 1.5E-13 112.7 15.9 150 49-200 45-204 (822)
83 KOG0543 FKBP-type peptidyl-pro 99.0 2.5E-09 5.5E-14 103.8 11.2 139 11-157 196-341 (397)
84 PF12895 Apc3: Anaphase-promot 99.0 1.1E-09 2.4E-14 85.3 7.1 80 87-167 2-84 (84)
85 PF13429 TPR_15: Tetratricopep 99.0 2.4E-09 5.2E-14 102.9 10.7 154 44-200 83-249 (280)
86 PF13432 TPR_16: Tetratricopep 99.0 2.9E-09 6.2E-14 78.6 8.1 64 112-175 2-65 (65)
87 KOG2003 TPR repeat-containing 98.9 1.4E-08 3E-13 99.1 13.8 149 49-199 501-660 (840)
88 KOG1840 Kinesin light chain [C 98.9 3.5E-09 7.5E-14 108.2 10.2 153 41-195 201-397 (508)
89 PF13432 TPR_16: Tetratricopep 98.9 4.9E-09 1.1E-13 77.3 8.3 64 78-141 1-65 (65)
90 KOG2002 TPR-containing nuclear 98.9 4.6E-09 1E-13 110.7 10.8 140 51-192 625-767 (1018)
91 PF09976 TPR_21: Tetratricopep 98.9 2.1E-08 4.5E-13 86.6 13.1 118 50-168 23-145 (145)
92 KOG1129 TPR repeat-containing 98.9 1.5E-09 3.3E-14 102.0 6.3 131 50-182 302-436 (478)
93 KOG4162 Predicted calmodulin-b 98.9 1.2E-08 2.5E-13 105.5 13.0 125 50-176 662-789 (799)
94 COG5010 TadD Flp pilus assembl 98.9 9.3E-09 2E-13 94.4 10.7 120 45-166 106-227 (257)
95 KOG3060 Uncharacterized conser 98.9 1.2E-07 2.6E-12 86.7 17.1 147 50-198 64-224 (289)
96 PRK10803 tol-pal system protei 98.9 3.1E-08 6.6E-13 93.9 13.9 103 75-177 143-253 (263)
97 PF12895 Apc3: Anaphase-promot 98.9 3.5E-09 7.6E-14 82.5 6.1 82 51-133 2-84 (84)
98 cd05804 StaR_like StaR_like; a 98.9 1.6E-08 3.5E-13 100.1 12.2 122 50-174 55-181 (355)
99 COG2956 Predicted N-acetylgluc 98.9 2.2E-08 4.9E-13 94.2 11.7 133 41-175 109-248 (389)
100 KOG1174 Anaphase-promoting com 98.8 4.3E-08 9.4E-13 94.9 13.1 165 36-200 229-439 (564)
101 KOG1128 Uncharacterized conser 98.8 1.4E-08 3.1E-13 104.3 10.2 143 52-195 464-617 (777)
102 KOG2002 TPR-containing nuclear 98.8 8E-08 1.7E-12 101.6 15.2 151 50-200 211-415 (1018)
103 PF12688 TPR_5: Tetratrico pep 98.8 1.4E-07 2.9E-12 78.5 13.7 107 77-189 4-117 (120)
104 KOG1174 Anaphase-promoting com 98.8 1.3E-07 2.8E-12 91.7 15.1 160 42-203 304-509 (564)
105 KOG1840 Kinesin light chain [C 98.8 1.9E-08 4.2E-13 102.8 10.0 136 36-171 238-397 (508)
106 PRK02603 photosystem I assembl 98.8 2.7E-08 5.9E-13 88.5 9.6 116 40-175 36-154 (172)
107 PRK10153 DNA-binding transcrip 98.8 7.4E-08 1.6E-12 99.9 14.1 124 51-177 355-489 (517)
108 KOG4555 TPR repeat-containing 98.8 1.1E-07 2.3E-12 78.4 11.8 99 76-174 45-148 (175)
109 PRK14574 hmsH outer membrane p 98.8 1.4E-07 3.1E-12 102.5 16.4 134 50-186 80-214 (822)
110 PF13512 TPR_18: Tetratricopep 98.8 2.3E-07 5E-12 78.6 13.9 104 74-177 10-135 (142)
111 TIGR02795 tol_pal_ybgF tol-pal 98.8 3.9E-08 8.4E-13 80.9 9.2 95 50-144 14-113 (119)
112 PRK14720 transcript cleavage f 98.8 6.3E-08 1.4E-12 104.5 12.9 154 35-197 27-201 (906)
113 cd00189 TPR Tetratricopeptide 98.7 3.3E-08 7.2E-13 76.0 7.3 88 50-139 12-100 (100)
114 KOG2076 RNA polymerase III tra 98.7 3.1E-07 6.7E-12 96.6 15.9 123 74-196 139-272 (895)
115 KOG2003 TPR repeat-containing 98.7 5.7E-08 1.2E-12 94.9 9.6 130 51-182 469-599 (840)
116 KOG4234 TPR repeat-containing 98.7 1.2E-07 2.5E-12 83.8 10.5 94 49-142 106-203 (271)
117 KOG0495 HAT repeat protein [RN 98.7 1.7E-07 3.7E-12 95.4 12.9 151 50-202 596-756 (913)
118 PF13371 TPR_9: Tetratricopept 98.7 9.7E-08 2.1E-12 71.9 8.2 63 115-177 3-65 (73)
119 COG1729 Uncharacterized protei 98.7 3.8E-07 8.1E-12 85.0 13.5 102 77-178 144-252 (262)
120 PRK11906 transcriptional regul 98.7 3.3E-07 7.2E-12 91.3 14.0 121 53-175 273-406 (458)
121 PF13525 YfiO: Outer membrane 98.7 9.8E-07 2.1E-11 80.7 16.2 136 49-184 16-184 (203)
122 cd05804 StaR_like StaR_like; a 98.7 2.5E-07 5.5E-12 91.6 12.9 160 36-196 3-179 (355)
123 KOG1127 TPR repeat-containing 98.7 6.4E-08 1.4E-12 102.3 8.6 157 34-192 487-657 (1238)
124 COG2956 Predicted N-acetylgluc 98.6 3.7E-07 8.1E-12 86.1 12.4 137 40-176 142-284 (389)
125 PRK10866 outer membrane biogen 98.6 1.5E-06 3.2E-11 81.7 16.6 134 49-182 43-216 (243)
126 PF13371 TPR_9: Tetratricopept 98.6 1.8E-07 3.9E-12 70.5 8.5 70 80-149 1-71 (73)
127 PF04733 Coatomer_E: Coatomer 98.6 7.2E-07 1.6E-11 86.0 14.3 159 32-193 112-287 (290)
128 PF14559 TPR_19: Tetratricopep 98.6 1.2E-07 2.5E-12 70.4 6.8 59 119-177 3-61 (68)
129 CHL00033 ycf3 photosystem I as 98.6 6.4E-07 1.4E-11 79.3 12.5 96 83-178 8-109 (168)
130 PRK10153 DNA-binding transcrip 98.6 9.4E-07 2E-11 91.7 15.5 133 67-200 332-488 (517)
131 PRK10747 putative protoheme IX 98.6 1.2E-06 2.6E-11 88.6 15.8 145 50-199 165-362 (398)
132 COG4785 NlpI Lipoprotein NlpI, 98.6 1.5E-07 3.2E-12 84.2 7.9 105 72-176 63-168 (297)
133 PRK14720 transcript cleavage f 98.6 5.9E-07 1.3E-11 97.2 13.9 126 67-196 26-180 (906)
134 COG4783 Putative Zn-dependent 98.6 1.6E-06 3.4E-11 86.1 15.7 120 69-190 303-423 (484)
135 PF13525 YfiO: Outer membrane 98.6 1E-06 2.3E-11 80.5 13.5 104 74-177 5-126 (203)
136 PRK10866 outer membrane biogen 98.6 2.5E-06 5.4E-11 80.2 16.3 105 73-177 31-160 (243)
137 KOG1128 Uncharacterized conser 98.6 2.1E-07 4.5E-12 95.9 9.5 121 50-172 497-618 (777)
138 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.6E-07 5.6E-12 91.9 9.7 69 67-137 70-142 (453)
139 PF14559 TPR_19: Tetratricopep 98.6 2.4E-07 5.2E-12 68.7 7.3 66 84-149 1-67 (68)
140 PRK10803 tol-pal system protei 98.6 3.8E-07 8.2E-12 86.5 10.4 94 50-143 155-253 (263)
141 PF06552 TOM20_plant: Plant sp 98.5 7.9E-07 1.7E-11 77.8 10.9 93 90-182 7-121 (186)
142 PRK15331 chaperone protein Sic 98.5 4.1E-07 8.9E-12 78.8 8.9 91 49-142 48-139 (165)
143 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 1.2E-06 2.7E-11 87.2 13.1 68 103-170 70-141 (453)
144 PRK10747 putative protoheme IX 98.5 3.1E-06 6.7E-11 85.6 16.2 150 49-200 129-329 (398)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.3E-06 2.8E-11 87.2 13.1 113 50-167 181-294 (395)
146 KOG1156 N-terminal acetyltrans 98.5 3.6E-06 7.8E-11 85.9 15.4 134 36-171 38-173 (700)
147 KOG0495 HAT repeat protein [RN 98.5 3.3E-06 7.2E-11 86.2 14.8 126 50-177 663-789 (913)
148 PRK11906 transcriptional regul 98.5 3.6E-06 7.8E-11 84.0 14.8 128 73-200 252-407 (458)
149 KOG1156 N-terminal acetyltrans 98.4 1.7E-06 3.6E-11 88.3 11.9 133 43-177 12-145 (700)
150 TIGR00540 hemY_coli hemY prote 98.4 9.5E-06 2.1E-10 82.4 17.7 126 49-176 95-222 (409)
151 TIGR00540 hemY_coli hemY prote 98.4 3.4E-06 7.3E-11 85.7 14.2 135 58-192 245-397 (409)
152 KOG0545 Aryl-hydrocarbon recep 98.4 1.9E-06 4.2E-11 78.4 9.9 128 10-146 165-303 (329)
153 PF13424 TPR_12: Tetratricopep 98.4 5.5E-07 1.2E-11 68.8 5.6 59 77-135 8-74 (78)
154 KOG4162 Predicted calmodulin-b 98.4 3.4E-06 7.4E-11 87.6 12.8 123 77-199 653-788 (799)
155 KOG1308 Hsp70-interacting prot 98.4 1.7E-07 3.6E-12 89.2 3.0 97 77-173 117-214 (377)
156 KOG2376 Signal recognition par 98.4 3.8E-06 8.3E-11 85.0 11.9 125 42-175 16-144 (652)
157 PF14938 SNAP: Soluble NSF att 98.3 9E-07 2E-11 85.2 6.9 136 36-172 29-186 (282)
158 PF13424 TPR_12: Tetratricopep 98.3 1.3E-06 2.8E-11 66.7 6.5 65 107-171 5-76 (78)
159 KOG1130 Predicted G-alpha GTPa 98.3 1.1E-06 2.3E-11 85.4 5.8 129 43-171 99-265 (639)
160 PF13512 TPR_18: Tetratricopep 98.3 6.3E-06 1.4E-10 69.9 9.4 97 47-143 19-135 (142)
161 PF09976 TPR_21: Tetratricopep 98.3 2.4E-05 5.3E-10 67.4 13.3 90 77-166 14-110 (145)
162 COG4235 Cytochrome c biogenesi 98.2 1.5E-05 3.2E-10 75.3 12.2 110 89-198 137-260 (287)
163 PF14938 SNAP: Soluble NSF att 98.2 4E-06 8.6E-11 80.8 8.2 134 43-176 79-231 (282)
164 KOG4555 TPR repeat-containing 98.2 8.9E-06 1.9E-10 67.3 8.7 97 43-141 47-149 (175)
165 KOG4340 Uncharacterized conser 98.2 1.8E-05 3.9E-10 74.2 11.7 144 50-195 22-208 (459)
166 COG1729 Uncharacterized protei 98.1 2.6E-05 5.7E-10 72.8 11.0 96 50-145 153-253 (262)
167 KOG1127 TPR repeat-containing 98.1 1.1E-05 2.4E-10 85.8 9.4 128 46-173 533-662 (1238)
168 COG4785 NlpI Lipoprotein NlpI, 98.1 1.7E-05 3.7E-10 71.2 8.7 97 44-142 70-168 (297)
169 KOG3785 Uncharacterized conser 98.1 9.5E-05 2.1E-09 70.9 13.9 80 50-130 34-114 (557)
170 PF06552 TOM20_plant: Plant sp 98.1 2.6E-05 5.6E-10 68.4 9.3 87 54-142 7-115 (186)
171 KOG1130 Predicted G-alpha GTPa 98.0 1.2E-05 2.6E-10 78.3 7.2 132 40-171 196-345 (639)
172 PF12688 TPR_5: Tetratrico pep 98.0 6.2E-05 1.3E-09 62.6 10.2 86 50-135 13-103 (120)
173 COG4700 Uncharacterized protei 98.0 0.0003 6.4E-09 62.0 14.4 120 53-175 71-194 (251)
174 PF12569 NARP1: NMDA receptor- 97.9 0.00028 6E-09 73.2 15.4 98 74-171 194-292 (517)
175 PF00515 TPR_1: Tetratricopept 97.9 1.7E-05 3.8E-10 50.1 4.2 32 108-139 2-33 (34)
176 KOG4642 Chaperone-dependent E3 97.9 4E-05 8.7E-10 69.8 8.0 87 48-136 20-107 (284)
177 PF04733 Coatomer_E: Coatomer 97.9 0.00027 6E-09 68.2 14.2 125 50-181 114-241 (290)
178 PLN03218 maturation of RBCL 1; 97.9 0.00021 4.5E-09 80.3 15.1 119 50-170 484-608 (1060)
179 PLN03218 maturation of RBCL 1; 97.9 0.00031 6.8E-09 78.9 16.2 118 50-168 591-711 (1060)
180 KOG3081 Vesicle coat complex C 97.9 0.00048 1E-08 63.9 14.5 139 50-193 149-293 (299)
181 PF13428 TPR_14: Tetratricopep 97.9 2.8E-05 6E-10 52.5 4.9 42 108-149 2-43 (44)
182 KOG0376 Serine-threonine phosp 97.9 1.4E-05 3.1E-10 79.4 4.9 105 47-153 13-118 (476)
183 PF13431 TPR_17: Tetratricopep 97.8 1.6E-05 3.5E-10 50.5 3.0 32 130-161 2-33 (34)
184 COG0457 NrfG FOG: TPR repeat [ 97.8 0.00059 1.3E-08 60.3 14.5 122 50-173 107-234 (291)
185 PLN03081 pentatricopeptide (PP 97.8 0.00028 6E-09 76.7 13.8 148 42-192 394-555 (697)
186 COG4700 Uncharacterized protei 97.8 0.00026 5.7E-09 62.3 10.6 123 44-168 94-220 (251)
187 COG4105 ComL DNA uptake lipopr 97.8 0.0017 3.7E-08 60.3 16.4 141 49-189 45-215 (254)
188 KOG2376 Signal recognition par 97.8 0.0005 1.1E-08 70.0 13.8 47 50-101 91-137 (652)
189 PF00515 TPR_1: Tetratricopept 97.8 6.3E-05 1.4E-09 47.5 4.8 34 141-174 1-34 (34)
190 KOG1310 WD40 repeat protein [G 97.7 0.00013 2.7E-09 73.3 9.1 102 76-177 376-481 (758)
191 COG4105 ComL DNA uptake lipopr 97.7 0.0021 4.5E-08 59.8 16.2 103 74-176 34-151 (254)
192 PLN03081 pentatricopeptide (PP 97.7 0.00027 5.8E-09 76.8 12.2 143 46-193 266-419 (697)
193 PF12569 NARP1: NMDA receptor- 97.7 0.00033 7.2E-09 72.7 12.1 129 41-171 196-335 (517)
194 KOG2796 Uncharacterized conser 97.7 0.00053 1.2E-08 63.5 11.8 126 50-176 189-321 (366)
195 KOG1915 Cell cycle control pro 97.7 0.0011 2.5E-08 65.9 14.8 147 50-196 378-538 (677)
196 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0015 3.3E-08 57.7 14.4 124 50-173 142-268 (291)
197 PF07719 TPR_2: Tetratricopept 97.7 0.00011 2.3E-09 46.2 4.8 29 144-172 4-32 (34)
198 PF07719 TPR_2: Tetratricopept 97.6 0.00014 3.1E-09 45.6 5.1 34 107-140 1-34 (34)
199 KOG0551 Hsp90 co-chaperone CNS 97.6 0.00035 7.7E-09 66.6 9.7 93 49-141 92-187 (390)
200 PF13431 TPR_17: Tetratricopep 97.6 5.5E-05 1.2E-09 48.0 2.8 32 96-127 1-33 (34)
201 PLN03077 Protein ECB2; Provisi 97.6 0.00058 1.3E-08 76.0 12.4 143 50-199 536-691 (857)
202 PLN03077 Protein ECB2; Provisi 97.6 0.00074 1.6E-08 75.2 12.8 133 42-177 557-693 (857)
203 PF13428 TPR_14: Tetratricopep 97.5 0.00023 5.1E-09 47.9 5.2 42 142-183 2-43 (44)
204 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0021 4.5E-08 64.4 14.1 104 81-186 176-279 (395)
205 KOG1586 Protein required for f 97.5 0.0014 3E-08 59.8 11.1 139 39-177 74-231 (288)
206 KOG3785 Uncharacterized conser 97.5 0.0014 2.9E-08 63.2 11.6 85 83-167 31-117 (557)
207 PRK04841 transcriptional regul 97.4 0.0018 3.9E-08 72.5 14.1 123 50-172 464-604 (903)
208 KOG4340 Uncharacterized conser 97.4 0.00028 6E-09 66.4 6.1 134 34-169 39-206 (459)
209 KOG4507 Uncharacterized conser 97.4 0.00029 6.3E-09 71.6 6.6 108 77-184 610-719 (886)
210 KOG1308 Hsp70-interacting prot 97.4 5.9E-05 1.3E-09 72.1 1.0 90 48-139 124-214 (377)
211 KOG1941 Acetylcholine receptor 97.4 0.00093 2E-08 64.5 8.9 132 42-173 125-278 (518)
212 PF10300 DUF3808: Protein of u 97.3 0.0027 5.9E-08 65.5 12.2 104 52-157 247-356 (468)
213 PF03704 BTAD: Bacterial trans 97.3 0.0075 1.6E-07 51.7 13.2 90 80-169 12-124 (146)
214 KOG1586 Protein required for f 97.2 0.0035 7.5E-08 57.3 10.9 140 37-177 29-190 (288)
215 KOG0546 HSP90 co-chaperone CPR 97.2 0.00049 1.1E-08 66.2 4.7 110 77-186 225-354 (372)
216 KOG2610 Uncharacterized conser 97.1 0.0071 1.5E-07 58.0 11.3 116 50-167 115-235 (491)
217 KOG2053 Mitochondrial inherita 97.0 0.006 1.3E-07 65.1 11.7 126 48-176 19-145 (932)
218 PRK10941 hypothetical protein; 97.0 0.0072 1.6E-07 57.5 11.4 72 107-178 181-252 (269)
219 PF13181 TPR_8: Tetratricopept 97.0 0.0011 2.4E-08 41.6 3.9 30 143-172 3-32 (34)
220 PF13181 TPR_8: Tetratricopept 97.0 0.0014 3E-08 41.1 4.3 33 108-140 2-34 (34)
221 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0062 1.3E-07 42.7 7.6 42 142-183 2-43 (53)
222 KOG3081 Vesicle coat complex C 97.0 0.012 2.6E-07 54.8 11.6 127 50-184 120-250 (299)
223 PRK04841 transcriptional regul 96.9 0.012 2.5E-07 65.9 14.2 145 50-194 421-602 (903)
224 PF05843 Suf: Suppressor of fo 96.9 0.021 4.5E-07 54.9 13.6 99 77-175 4-104 (280)
225 PF12968 DUF3856: Domain of Un 96.9 0.041 8.9E-07 45.0 12.9 91 80-170 15-129 (144)
226 KOG2796 Uncharacterized conser 96.9 0.014 3E-07 54.4 11.4 122 77-198 180-319 (366)
227 COG3118 Thioredoxin domain-con 96.9 0.025 5.3E-07 53.7 13.1 137 50-189 146-286 (304)
228 PF05843 Suf: Suppressor of fo 96.8 0.021 4.5E-07 54.9 12.9 125 50-176 13-142 (280)
229 COG2976 Uncharacterized protei 96.8 0.03 6.5E-07 50.0 12.5 119 56-175 70-193 (207)
230 COG3071 HemY Uncharacterized e 96.8 0.007 1.5E-07 59.2 9.0 115 50-170 275-390 (400)
231 KOG2471 TPR repeat-containing 96.8 0.0016 3.5E-08 65.1 4.6 105 49-153 251-381 (696)
232 KOG1070 rRNA processing protei 96.8 0.018 3.8E-07 64.3 12.9 150 41-195 1502-1664(1710)
233 PF04184 ST7: ST7 protein; In 96.7 0.016 3.4E-07 58.6 11.5 120 45-168 175-322 (539)
234 KOG1915 Cell cycle control pro 96.7 0.035 7.5E-07 55.7 13.2 141 50-193 85-235 (677)
235 PF04184 ST7: ST7 protein; In 96.7 0.043 9.4E-07 55.5 13.9 119 32-151 195-340 (539)
236 COG3071 HemY Uncharacterized e 96.5 0.11 2.4E-06 51.1 15.3 121 49-171 95-217 (400)
237 KOG4151 Myosin assembly protei 96.5 0.011 2.5E-07 62.4 9.1 113 76-188 55-174 (748)
238 KOG2471 TPR repeat-containing 96.4 0.02 4.4E-07 57.5 9.4 114 75-188 241-382 (696)
239 PF04781 DUF627: Protein of un 96.4 0.042 9E-07 44.5 9.5 91 80-170 2-107 (111)
240 PF13174 TPR_6: Tetratricopept 96.3 0.007 1.5E-07 37.3 4.1 31 143-173 2-32 (33)
241 KOG1941 Acetylcholine receptor 96.3 0.0077 1.7E-07 58.4 6.0 144 50-193 95-274 (518)
242 PF13176 TPR_7: Tetratricopept 96.3 0.0064 1.4E-07 38.9 3.7 26 77-102 2-27 (36)
243 PF15015 NYD-SP12_N: Spermatog 96.3 0.024 5.3E-07 55.9 9.1 91 79-169 181-290 (569)
244 smart00028 TPR Tetratricopepti 96.3 0.0076 1.6E-07 35.8 3.9 29 110-138 4-32 (34)
245 PRK10941 hypothetical protein; 96.2 0.045 9.7E-07 52.1 10.6 75 76-150 183-258 (269)
246 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.028 6.1E-07 39.4 6.8 42 109-150 3-44 (53)
247 PF03704 BTAD: Bacterial trans 96.2 0.033 7.2E-07 47.6 8.8 58 77-134 65-123 (146)
248 KOG3824 Huntingtin interacting 96.1 0.021 4.6E-07 54.2 7.7 66 112-177 121-186 (472)
249 PF13174 TPR_6: Tetratricopept 96.1 0.011 2.3E-07 36.5 4.0 31 109-139 2-32 (33)
250 KOG3364 Membrane protein invol 96.0 0.16 3.4E-06 42.7 11.4 76 104-179 29-109 (149)
251 KOG2053 Mitochondrial inherita 96.0 0.073 1.6E-06 57.2 11.8 90 84-173 19-109 (932)
252 KOG4507 Uncharacterized conser 95.9 0.037 7.9E-07 56.8 9.0 101 50-151 619-720 (886)
253 KOG3824 Huntingtin interacting 95.9 0.031 6.6E-07 53.2 7.7 78 73-150 115-193 (472)
254 smart00028 TPR Tetratricopepti 95.9 0.013 2.9E-07 34.7 3.7 33 142-174 2-34 (34)
255 PF13176 TPR_7: Tetratricopept 95.7 0.021 4.6E-07 36.4 4.2 24 110-133 2-25 (36)
256 PF10602 RPN7: 26S proteasome 95.7 0.16 3.4E-06 45.3 11.2 97 75-171 37-143 (177)
257 KOG4814 Uncharacterized conser 95.7 0.12 2.5E-06 53.8 11.3 95 77-171 357-458 (872)
258 KOG1070 rRNA processing protei 95.6 0.12 2.6E-06 58.1 12.0 124 50-173 1470-1596(1710)
259 KOG2047 mRNA splicing factor [ 95.6 0.46 9.9E-06 49.7 15.4 145 50-194 359-540 (835)
260 KOG0530 Protein farnesyltransf 95.6 0.38 8.3E-06 45.0 13.3 153 50-204 55-226 (318)
261 KOG2047 mRNA splicing factor [ 95.6 0.15 3.2E-06 53.2 11.6 160 37-196 385-581 (835)
262 PF04781 DUF627: Protein of un 95.5 0.08 1.7E-06 42.9 7.7 89 49-137 7-108 (111)
263 PF10300 DUF3808: Protein of u 95.5 0.4 8.7E-06 49.6 15.0 122 51-173 201-337 (468)
264 PF09986 DUF2225: Uncharacteri 95.5 0.23 4.9E-06 45.7 11.7 89 87-175 90-199 (214)
265 COG4976 Predicted methyltransf 95.5 0.022 4.7E-07 52.0 4.8 57 84-140 5-62 (287)
266 KOG2396 HAT (Half-A-TPR) repea 95.3 0.32 6.9E-06 49.4 12.9 95 92-186 89-185 (568)
267 COG2976 Uncharacterized protei 95.3 0.075 1.6E-06 47.5 7.5 92 50-141 101-193 (207)
268 COG3898 Uncharacterized membra 95.2 0.55 1.2E-05 46.4 13.5 123 50-175 166-297 (531)
269 PF02259 FAT: FAT domain; Int 95.1 0.39 8.4E-06 47.1 13.1 111 44-154 151-305 (352)
270 PF09613 HrpB1_HrpK: Bacterial 95.1 0.35 7.5E-06 42.1 10.8 82 76-157 12-94 (160)
271 PF13281 DUF4071: Domain of un 95.1 0.53 1.1E-05 46.8 13.5 126 51-178 195-342 (374)
272 COG3914 Spy Predicted O-linked 94.9 0.57 1.2E-05 48.5 13.4 124 57-180 50-181 (620)
273 KOG3364 Membrane protein invol 94.9 0.27 5.8E-06 41.4 9.1 80 72-151 30-115 (149)
274 COG4976 Predicted methyltransf 94.8 0.046 1E-06 50.0 4.9 61 116-176 4-64 (287)
275 PF14561 TPR_20: Tetratricopep 94.7 0.19 4.2E-06 39.4 7.8 62 127-188 8-71 (90)
276 KOG1585 Protein required for f 94.3 0.31 6.8E-06 45.1 9.1 122 46-167 38-176 (308)
277 COG2912 Uncharacterized conser 94.3 0.7 1.5E-05 43.6 11.7 71 107-177 181-251 (269)
278 KOG2300 Uncharacterized conser 94.3 0.88 1.9E-05 46.1 12.8 119 50-171 335-475 (629)
279 PF14561 TPR_20: Tetratricopep 94.2 0.56 1.2E-05 36.8 9.2 46 95-140 9-55 (90)
280 PF13374 TPR_10: Tetratricopep 93.9 0.11 2.5E-06 33.5 4.2 27 109-135 4-30 (42)
281 COG3898 Uncharacterized membra 93.9 1.2 2.6E-05 44.1 12.7 129 40-169 83-216 (531)
282 KOG3617 WD40 and TPR repeat-co 93.8 0.22 4.7E-06 53.3 8.0 93 77-169 861-995 (1416)
283 COG4649 Uncharacterized protei 93.8 4.5 9.7E-05 35.8 15.3 120 50-169 70-195 (221)
284 KOG1585 Protein required for f 93.7 3.6 7.7E-05 38.4 14.7 98 77-174 34-143 (308)
285 PF09986 DUF2225: Uncharacteri 93.5 1 2.2E-05 41.4 11.1 99 50-148 89-207 (214)
286 PF13374 TPR_10: Tetratricopep 93.5 0.14 3E-06 33.1 4.1 30 75-104 3-32 (42)
287 KOG0546 HSP90 co-chaperone CPR 93.5 0.045 9.8E-07 53.0 2.2 130 23-157 223-359 (372)
288 PF08631 SPO22: Meiosis protei 93.3 4 8.8E-05 39.0 15.5 123 50-172 5-152 (278)
289 PF12968 DUF3856: Domain of Un 93.0 1.1 2.4E-05 36.9 9.2 86 50-135 21-128 (144)
290 COG5191 Uncharacterized conser 92.8 0.3 6.4E-06 46.8 6.4 94 96-189 95-190 (435)
291 KOG1550 Extracellular protein 92.7 2.5 5.3E-05 44.8 14.1 115 50-171 261-394 (552)
292 PRK13184 pknD serine/threonine 92.6 1.1 2.4E-05 49.9 11.5 99 78-177 479-588 (932)
293 KOG2610 Uncharacterized conser 92.4 1.4 3.1E-05 42.7 10.5 98 80-177 109-211 (491)
294 PF02259 FAT: FAT domain; Int 92.4 3.7 8.1E-05 40.1 14.3 110 74-183 146-300 (352)
295 COG0790 FOG: TPR repeat, SEL1 92.3 4.8 0.0001 38.5 14.6 115 52-172 91-222 (292)
296 KOG2396 HAT (Half-A-TPR) repea 92.2 1.1 2.4E-05 45.6 10.0 87 57-145 90-178 (568)
297 KOG1310 WD40 repeat protein [G 91.9 0.44 9.6E-06 48.7 6.8 91 49-141 385-479 (758)
298 PF09613 HrpB1_HrpK: Bacterial 91.9 1.1 2.3E-05 39.1 8.3 73 48-122 20-93 (160)
299 PF13281 DUF4071: Domain of un 91.8 2.1 4.6E-05 42.6 11.5 97 77-173 144-258 (374)
300 KOG0530 Protein farnesyltransf 91.5 3 6.6E-05 39.2 11.2 104 85-188 54-160 (318)
301 PRK15180 Vi polysaccharide bio 91.4 0.64 1.4E-05 47.0 7.2 130 43-174 294-424 (831)
302 PF12862 Apc5: Anaphase-promot 91.3 0.85 1.8E-05 35.9 6.7 52 85-136 9-70 (94)
303 PF08424 NRDE-2: NRDE-2, neces 91.2 7.9 0.00017 37.9 14.8 112 58-171 5-132 (321)
304 COG2912 Uncharacterized conser 91.1 1.4 3.1E-05 41.6 8.9 73 77-149 184-257 (269)
305 TIGR02561 HrpB1_HrpK type III 91.0 2.7 5.8E-05 36.1 9.7 79 79-157 15-94 (153)
306 KOG1550 Extracellular protein 91.0 2.5 5.4E-05 44.7 11.8 123 40-169 289-425 (552)
307 PF10516 SHNi-TPR: SHNi-TPR; 90.7 0.43 9.3E-06 30.9 3.6 29 142-170 2-30 (38)
308 PF15015 NYD-SP12_N: Spermatog 90.6 0.45 9.7E-06 47.3 5.3 94 41-134 179-289 (569)
309 COG0790 FOG: TPR repeat, SEL1 90.6 7.1 0.00015 37.3 13.8 110 41-155 111-236 (292)
310 PF08631 SPO22: Meiosis protei 90.2 5.1 0.00011 38.3 12.3 94 84-177 3-123 (278)
311 PF12862 Apc5: Anaphase-promot 90.2 2 4.4E-05 33.7 7.9 58 115-172 6-72 (94)
312 PF10602 RPN7: 26S proteasome 90.2 0.7 1.5E-05 41.1 5.9 102 36-137 33-143 (177)
313 COG3118 Thioredoxin domain-con 90.1 2.6 5.6E-05 40.3 9.7 99 77-178 137-239 (304)
314 PF10579 Rapsyn_N: Rapsyn N-te 90.0 2.6 5.7E-05 32.0 7.8 56 77-132 9-68 (80)
315 PF10516 SHNi-TPR: SHNi-TPR; 89.8 0.51 1.1E-05 30.5 3.3 28 109-136 3-30 (38)
316 PF07079 DUF1347: Protein of u 89.0 13 0.00029 37.7 14.1 136 50-193 391-544 (549)
317 KOG2041 WD40 repeat protein [G 88.9 2.1 4.6E-05 45.3 8.8 106 51-166 747-877 (1189)
318 PRK15180 Vi polysaccharide bio 88.8 4.6 0.0001 41.1 10.8 114 85-198 300-424 (831)
319 COG3629 DnrI DNA-binding trans 88.0 2.8 6E-05 40.1 8.4 64 107-170 153-216 (280)
320 PF10373 EST1_DNA_bind: Est1 D 87.9 2 4.3E-05 40.7 7.7 15 135-149 10-24 (278)
321 PF07720 TPR_3: Tetratricopept 87.7 1.7 3.6E-05 27.7 4.7 16 81-96 8-23 (36)
322 PF04910 Tcf25: Transcriptiona 87.7 27 0.00057 34.9 15.7 102 63-166 31-164 (360)
323 PF10373 EST1_DNA_bind: Est1 D 87.1 2.1 4.6E-05 40.5 7.3 61 93-153 1-62 (278)
324 PF08424 NRDE-2: NRDE-2, neces 86.9 12 0.00025 36.7 12.5 117 54-172 47-185 (321)
325 KOG2300 Uncharacterized conser 86.7 16 0.00034 37.5 13.1 123 50-172 379-516 (629)
326 PF07720 TPR_3: Tetratricopept 86.4 2.6 5.6E-05 26.9 5.0 29 110-138 4-34 (36)
327 PF07721 TPR_4: Tetratricopept 86.4 0.9 1.9E-05 26.5 2.7 18 111-128 5-22 (26)
328 KOG1258 mRNA processing protei 86.3 14 0.00029 38.8 12.8 111 50-162 309-421 (577)
329 KOG0686 COP9 signalosome, subu 86.2 4.6 0.0001 40.2 9.0 93 76-168 152-256 (466)
330 TIGR02561 HrpB1_HrpK type III 86.0 3.8 8.3E-05 35.2 7.3 71 50-122 22-93 (153)
331 KOG0529 Protein geranylgeranyl 85.5 23 0.0005 35.5 13.4 149 35-183 25-191 (421)
332 PF10255 Paf67: RNA polymerase 85.2 4 8.6E-05 41.2 8.3 95 79-173 127-231 (404)
333 PRK13184 pknD serine/threonine 84.3 7.5 0.00016 43.6 10.6 125 50-177 487-627 (932)
334 PF10579 Rapsyn_N: Rapsyn N-te 84.1 7.4 0.00016 29.6 7.3 61 110-170 9-72 (80)
335 KOG0686 COP9 signalosome, subu 83.9 5.7 0.00012 39.6 8.4 151 39-189 150-328 (466)
336 KOG4814 Uncharacterized conser 83.7 5.4 0.00012 42.0 8.5 69 110-178 357-431 (872)
337 PF07079 DUF1347: Protein of u 83.1 7.9 0.00017 39.3 9.1 57 77-133 465-521 (549)
338 cd02682 MIT_AAA_Arch MIT: doma 82.9 5 0.00011 30.2 6.0 39 157-195 29-67 (75)
339 KOG3616 Selective LIM binding 82.7 8 0.00017 41.5 9.4 109 50-168 777-909 (1636)
340 KOG2581 26S proteasome regulat 82.2 21 0.00044 35.8 11.4 126 50-175 138-281 (493)
341 PF07721 TPR_4: Tetratricopept 82.1 1.9 4.1E-05 25.1 2.8 24 142-165 2-25 (26)
342 PF10345 Cohesin_load: Cohesin 81.5 73 0.0016 34.2 16.7 121 56-177 39-177 (608)
343 KOG1914 mRNA cleavage and poly 81.4 21 0.00045 37.2 11.5 71 62-135 10-81 (656)
344 PF11207 DUF2989: Protein of u 81.2 9 0.0002 34.7 8.1 69 91-161 123-198 (203)
345 COG3947 Response regulator con 80.9 6.1 0.00013 37.8 7.1 57 111-167 283-339 (361)
346 cd02682 MIT_AAA_Arch MIT: doma 80.5 12 0.00026 28.2 7.3 27 76-102 8-34 (75)
347 COG5191 Uncharacterized conser 80.4 3 6.5E-05 40.1 5.0 84 61-146 96-181 (435)
348 COG3629 DnrI DNA-binding trans 80.2 7.8 0.00017 37.0 7.8 60 77-136 156-216 (280)
349 KOG3617 WD40 and TPR repeat-co 79.4 12 0.00026 40.8 9.4 95 59-167 790-884 (1416)
350 COG4941 Predicted RNA polymera 79.3 16 0.00034 35.8 9.4 91 88-178 310-402 (415)
351 KOG3616 Selective LIM binding 79.3 3.2 7E-05 44.3 5.2 89 45-133 667-791 (1636)
352 KOG0529 Protein geranylgeranyl 79.2 14 0.0003 37.0 9.3 101 51-153 88-195 (421)
353 COG3914 Spy Predicted O-linked 77.9 28 0.00061 36.5 11.3 106 50-157 79-192 (620)
354 PF04910 Tcf25: Transcriptiona 77.9 24 0.00053 35.1 10.9 134 40-173 41-225 (360)
355 PF10255 Paf67: RNA polymerase 77.2 23 0.00049 35.8 10.4 103 66-169 67-192 (404)
356 PF12854 PPR_1: PPR repeat 76.9 6.3 0.00014 24.5 4.2 29 104-132 4-32 (34)
357 PF13041 PPR_2: PPR repeat fam 76.5 10 0.00022 25.5 5.6 38 76-113 5-44 (50)
358 PF04053 Coatomer_WDAD: Coatom 74.9 22 0.00048 36.5 9.9 27 107-133 347-373 (443)
359 COG4455 ImpE Protein of avirul 74.9 17 0.00038 33.4 7.9 60 117-176 11-70 (273)
360 PF14863 Alkyl_sulf_dimr: Alky 74.4 16 0.00034 31.2 7.3 51 107-157 70-120 (141)
361 PF11207 DUF2989: Protein of u 73.7 29 0.00063 31.5 9.1 70 55-126 123-197 (203)
362 COG4649 Uncharacterized protei 73.6 51 0.0011 29.4 10.2 103 50-153 106-212 (221)
363 PF11817 Foie-gras_1: Foie gra 73.6 15 0.00032 34.5 7.8 58 107-164 178-241 (247)
364 KOG3807 Predicted membrane pro 73.2 91 0.002 30.6 12.7 92 79-172 189-306 (556)
365 cd02683 MIT_1 MIT: domain cont 73.1 17 0.00037 27.5 6.5 38 158-195 30-67 (77)
366 COG2909 MalT ATP-dependent tra 72.7 90 0.002 34.5 13.9 114 78-191 419-551 (894)
367 KOG1839 Uncharacterized protei 72.5 20 0.00042 41.0 9.3 63 107-169 973-1043(1236)
368 TIGR03504 FimV_Cterm FimV C-te 71.8 15 0.00033 24.5 5.2 25 145-169 3-27 (44)
369 PF12926 MOZART2: Mitotic-spin 70.9 8.5 0.00018 29.7 4.3 44 337-382 33-76 (88)
370 COG5159 RPN6 26S proteasome re 70.1 48 0.001 31.8 9.9 121 48-168 13-152 (421)
371 PF11817 Foie-gras_1: Foie gra 69.9 31 0.00068 32.3 9.1 58 77-134 181-245 (247)
372 KOG1839 Uncharacterized protei 69.9 12 0.00026 42.7 6.9 94 77-170 976-1086(1236)
373 PF11846 DUF3366: Domain of un 69.6 16 0.00034 32.7 6.7 45 94-138 131-175 (193)
374 KOG1258 mRNA processing protei 69.3 66 0.0014 33.9 11.6 101 77-177 300-402 (577)
375 COG2909 MalT ATP-dependent tra 68.3 61 0.0013 35.8 11.5 117 50-166 427-564 (894)
376 smart00745 MIT Microtubule Int 67.6 17 0.00037 27.1 5.6 37 159-195 33-69 (77)
377 PF04212 MIT: MIT (microtubule 67.1 17 0.00037 26.5 5.3 30 163-192 34-63 (69)
378 PF09670 Cas_Cas02710: CRISPR- 66.5 44 0.00095 33.6 9.8 63 75-137 132-199 (379)
379 PF04348 LppC: LppC putative l 66.3 1.9 4.2E-05 45.4 0.0 102 71-172 21-129 (536)
380 PF04212 MIT: MIT (microtubule 66.2 12 0.00026 27.3 4.4 27 77-103 8-34 (69)
381 KOG3807 Predicted membrane pro 64.8 1.5E+02 0.0032 29.2 12.5 104 50-157 196-327 (556)
382 KOG2581 26S proteasome regulat 63.9 57 0.0012 32.9 9.5 57 50-106 221-279 (493)
383 TIGR03504 FimV_Cterm FimV C-te 63.2 15 0.00033 24.5 3.9 25 111-135 3-27 (44)
384 cd02683 MIT_1 MIT: domain cont 63.2 13 0.00029 28.1 4.1 27 76-102 8-34 (77)
385 cd02681 MIT_calpain7_1 MIT: do 62.0 15 0.00032 27.8 4.1 27 77-103 9-35 (76)
386 cd02678 MIT_VPS4 MIT: domain c 62.0 35 0.00075 25.5 6.2 37 159-195 31-67 (75)
387 KOG3783 Uncharacterized conser 61.7 82 0.0018 32.9 10.5 80 57-138 252-334 (546)
388 PF11846 DUF3366: Domain of un 61.1 47 0.001 29.6 8.1 50 123-173 127-176 (193)
389 PF13041 PPR_2: PPR repeat fam 60.9 22 0.00047 23.8 4.6 33 105-137 1-33 (50)
390 KOG0890 Protein kinase of the 60.8 94 0.002 38.2 12.0 101 73-174 1669-1788(2382)
391 smart00386 HAT HAT (Half-A-TPR 60.3 24 0.00051 20.6 4.3 22 124-145 4-25 (33)
392 PHA02593 62 clamp loader small 60.0 44 0.00095 29.8 7.2 65 321-385 94-159 (191)
393 cd02684 MIT_2 MIT: domain cont 58.9 52 0.0011 24.6 6.7 37 159-195 31-67 (75)
394 KOG2041 WD40 repeat protein [G 58.8 24 0.00052 37.8 6.3 20 387-406 1088-1107(1189)
395 KOG2422 Uncharacterized conser 58.7 2E+02 0.0043 30.5 12.6 90 88-177 252-379 (665)
396 cd02656 MIT MIT: domain contai 57.9 36 0.00079 25.2 5.7 37 159-195 31-67 (75)
397 PHA02537 M terminase endonucle 57.8 21 0.00046 33.1 5.2 45 142-187 170-223 (230)
398 KOG0276 Vesicle coat complex C 57.0 93 0.002 33.0 10.0 26 77-102 669-694 (794)
399 PF12854 PPR_1: PPR repeat 57.0 23 0.0005 21.9 3.8 26 74-99 7-32 (34)
400 COG3947 Response regulator con 56.0 40 0.00086 32.5 6.7 55 79-133 284-339 (361)
401 PF09205 DUF1955: Domain of un 55.6 1E+02 0.0022 26.3 8.3 60 110-169 88-148 (161)
402 COG5107 RNA14 Pre-mRNA 3'-end 55.3 2.6E+02 0.0055 28.9 13.1 75 60-136 30-105 (660)
403 KOG3783 Uncharacterized conser 54.7 77 0.0017 33.0 9.0 64 110-173 452-523 (546)
404 COG5536 BET4 Protein prenyltra 53.9 63 0.0014 30.9 7.6 133 54-186 90-238 (328)
405 PHA02537 M terminase endonucle 53.5 91 0.002 29.0 8.6 91 50-140 95-211 (230)
406 KOG1914 mRNA cleavage and poly 53.2 2.3E+02 0.005 29.8 12.0 117 53-170 346-464 (656)
407 KOG0985 Vesicle coat protein c 52.0 49 0.0011 37.3 7.4 104 50-168 1116-1247(1666)
408 smart00386 HAT HAT (Half-A-TPR 52.0 38 0.00083 19.6 4.2 29 155-183 1-29 (33)
409 cd02681 MIT_calpain7_1 MIT: do 51.8 65 0.0014 24.3 6.1 15 181-195 54-68 (76)
410 PF10345 Cohesin_load: Cohesin 51.7 1.1E+02 0.0025 32.7 10.4 92 77-168 304-431 (608)
411 cd02677 MIT_SNX15 MIT: domain 50.0 80 0.0017 23.7 6.4 36 160-195 32-67 (75)
412 cd02684 MIT_2 MIT: domain cont 50.0 28 0.0006 26.2 3.9 27 77-103 9-35 (75)
413 COG4455 ImpE Protein of avirul 49.6 68 0.0015 29.7 6.9 62 80-141 7-69 (273)
414 PF03564 DUF1759: Protein of u 48.9 98 0.0021 26.0 7.7 76 306-381 6-87 (145)
415 cd02680 MIT_calpain7_2 MIT: do 48.8 32 0.00069 25.9 4.0 15 87-101 19-33 (75)
416 PF02184 HAT: HAT (Half-A-TPR) 48.6 28 0.00061 21.6 3.0 26 89-114 2-27 (32)
417 smart00745 MIT Microtubule Int 48.6 32 0.00069 25.6 4.1 26 77-102 11-36 (77)
418 PF01239 PPTA: Protein prenylt 47.6 53 0.0011 19.6 4.2 29 126-154 2-30 (31)
419 PF14863 Alkyl_sulf_dimr: Alky 47.4 1.2E+02 0.0026 25.8 7.8 49 141-189 70-118 (141)
420 PF01535 PPR: PPR repeat; Int 46.9 31 0.00067 19.9 3.2 20 80-99 6-25 (31)
421 cd02678 MIT_VPS4 MIT: domain c 46.5 36 0.00079 25.4 4.1 26 77-102 9-34 (75)
422 COG5187 RPN7 26S proteasome re 44.9 2.9E+02 0.0063 26.8 10.5 28 107-134 115-142 (412)
423 KOG0985 Vesicle coat protein c 44.3 1.7E+02 0.0037 33.2 10.0 58 107-169 1104-1161(1666)
424 KOG4014 Uncharacterized conser 43.7 2.5E+02 0.0054 25.4 11.1 97 52-154 49-157 (248)
425 PRK11619 lytic murein transgly 43.7 2.6E+02 0.0057 30.3 11.6 118 52-169 255-374 (644)
426 cd02656 MIT MIT: domain contai 42.6 40 0.00087 25.0 3.8 26 77-102 9-34 (75)
427 PF12739 TRAPPC-Trs85: ER-Golg 42.2 2.5E+02 0.0055 28.4 10.7 95 76-170 210-329 (414)
428 PF02064 MAS20: MAS20 protein 41.9 60 0.0013 26.9 5.0 31 77-107 66-96 (121)
429 cd02677 MIT_SNX15 MIT: domain 41.8 45 0.00099 25.0 3.9 27 77-103 9-35 (75)
430 PF04053 Coatomer_WDAD: Coatom 41.4 81 0.0017 32.4 7.0 74 79-167 300-373 (443)
431 PF10952 DUF2753: Protein of u 40.1 1.2E+02 0.0025 25.4 6.2 56 77-132 4-75 (140)
432 TIGR00756 PPR pentatricopeptid 39.9 63 0.0014 18.9 3.9 21 113-133 6-26 (35)
433 KOG1811 Predicted Zn2+-binding 39.4 2.5E+02 0.0054 30.0 9.8 57 115-174 564-620 (1141)
434 KOG4151 Myosin assembly protei 39.2 1.1E+02 0.0024 33.3 7.7 96 50-145 65-165 (748)
435 cd02680 MIT_calpain7_2 MIT: do 39.0 50 0.0011 24.9 3.7 33 90-136 3-35 (75)
436 COG3014 Uncharacterized protei 38.6 4.1E+02 0.0088 26.4 11.9 31 144-174 197-227 (449)
437 PF02064 MAS20: MAS20 protein 37.2 1.1E+02 0.0024 25.4 5.8 39 146-184 68-106 (121)
438 PF13812 PPR_3: Pentatricopept 36.3 84 0.0018 18.4 4.0 23 110-132 4-26 (34)
439 PRK15490 Vi polysaccharide bio 35.9 5E+02 0.011 27.7 11.7 57 107-165 42-98 (578)
440 PF03392 OS-D: Insect pheromon 35.6 40 0.00087 26.6 2.9 33 388-426 55-87 (95)
441 KOG3192 Mitochondrial J-type c 35.6 2.3E+02 0.005 24.6 7.6 50 307-358 57-106 (168)
442 PF13934 ELYS: Nuclear pore co 35.5 3.6E+02 0.0078 24.8 9.9 102 56-166 64-165 (226)
443 TIGR02710 CRISPR-associated pr 35.4 4.8E+02 0.01 26.3 11.8 56 77-132 133-196 (380)
444 KOG0890 Protein kinase of the 35.2 1.5E+02 0.0032 36.7 8.4 52 116-167 1458-1509(2382)
445 PF04190 DUF410: Protein of un 35.1 2.9E+02 0.0064 26.0 9.3 26 139-164 88-113 (260)
446 PF09797 NatB_MDM20: N-acetylt 35.0 3E+02 0.0064 27.3 9.8 47 120-166 196-242 (365)
447 COG4941 Predicted RNA polymera 35.0 2.3E+02 0.005 28.0 8.4 94 51-148 309-406 (415)
448 PF10858 DUF2659: Protein of u 34.6 3.3E+02 0.0071 24.1 11.8 121 51-171 70-201 (220)
449 KOG0276 Vesicle coat complex C 34.6 2E+02 0.0044 30.7 8.3 50 83-136 646-695 (794)
450 KOG0292 Vesicle coat complex C 34.5 6.7E+02 0.015 28.3 12.4 101 77-177 994-1120(1202)
451 PF09205 DUF1955: Domain of un 34.5 2.4E+02 0.0053 24.0 7.4 90 41-137 56-150 (161)
452 KOG1464 COP9 signalosome, subu 34.4 1.2E+02 0.0025 29.1 6.1 49 87-135 40-93 (440)
453 COG1747 Uncharacterized N-term 34.0 5.1E+02 0.011 27.3 10.9 78 89-168 81-158 (711)
454 KOG2561 Adaptor protein NUB1, 33.9 3E+02 0.0065 28.2 9.1 95 75-169 164-295 (568)
455 KOG1464 COP9 signalosome, subu 33.8 94 0.002 29.7 5.4 55 49-103 38-94 (440)
456 PF03448 MgtE_N: MgtE intracel 33.4 45 0.00097 26.1 3.0 81 310-400 17-97 (102)
457 PF03745 DUF309: Domain of unk 33.1 1.8E+02 0.004 20.8 7.2 51 79-129 4-61 (62)
458 KOG0687 26S proteasome regulat 32.5 5E+02 0.011 25.6 10.2 25 77-101 107-131 (393)
459 cd02679 MIT_spastin MIT: domai 32.3 71 0.0015 24.3 3.7 24 79-102 13-36 (79)
460 KOG1920 IkappaB kinase complex 31.7 1.2E+02 0.0026 34.7 6.7 22 113-134 958-979 (1265)
461 cd08803 Death_ank3 Death domai 31.7 32 0.00069 26.5 1.7 68 310-386 13-82 (84)
462 KOG1463 26S proteasome regulat 31.1 1.3E+02 0.0027 29.8 5.9 92 81-172 216-318 (411)
463 PF07219 HemY_N: HemY protein 30.8 2.4E+02 0.0053 22.5 6.9 45 111-155 63-107 (108)
464 PF08238 Sel1: Sel1 repeat; I 30.6 1.1E+02 0.0025 18.6 4.1 10 124-133 25-34 (39)
465 PRK05686 fliG flagellar motor 30.4 1.8E+02 0.004 28.6 7.3 93 313-406 112-229 (339)
466 PF07219 HemY_N: HemY protein 30.2 2.5E+02 0.0054 22.4 6.9 29 78-106 63-91 (108)
467 smart00671 SEL1 Sel1-like repe 30.2 98 0.0021 18.5 3.6 12 89-100 20-31 (36)
468 PF06957 COPI_C: Coatomer (COP 29.9 2.1E+02 0.0046 29.1 7.7 100 77-176 207-335 (422)
469 COG3084 Uncharacterized protei 29.3 34 0.00073 25.4 1.4 41 349-389 5-46 (88)
470 KOG0292 Vesicle coat complex C 29.0 2.8E+02 0.0062 31.0 8.6 102 43-144 993-1121(1202)
471 KOG2997 F-box protein FBX9 [Ge 27.6 1.1E+02 0.0023 29.9 4.8 39 68-106 13-51 (366)
472 KOG1497 COP9 signalosome, subu 27.5 6.1E+02 0.013 25.0 11.7 95 74-169 103-212 (399)
473 PF09670 Cas_Cas02710: CRISPR- 27.3 6.1E+02 0.013 25.4 10.5 55 49-103 142-198 (379)
474 PF13226 DUF4034: Domain of un 27.0 4E+02 0.0088 25.5 8.6 34 157-190 115-148 (277)
475 cd00280 TRFH Telomeric Repeat 26.0 1.7E+02 0.0038 26.2 5.5 25 81-106 118-142 (200)
476 PF04190 DUF410: Protein of un 25.7 5.6E+02 0.012 24.1 9.8 35 136-170 135-170 (260)
477 COG5466 Predicted small metal- 25.0 1.3E+02 0.0028 21.4 3.6 36 388-423 20-55 (59)
478 KOG4563 Cell cycle-regulated h 24.5 1.3E+02 0.0029 29.8 4.9 52 76-127 43-103 (400)
479 KOG4279 Serine/threonine prote 24.1 1.8E+02 0.004 31.8 6.1 123 50-174 255-399 (1226)
480 cd02679 MIT_spastin MIT: domai 23.8 1.5E+02 0.0032 22.6 4.1 14 155-168 22-35 (79)
481 PF12753 Nro1: Nuclear pore co 23.8 1.2E+02 0.0025 30.6 4.5 29 125-155 336-364 (404)
482 TIGR00985 3a0801s04tom mitocho 23.6 1.6E+02 0.0034 25.4 4.7 35 79-113 95-130 (148)
483 smart00777 Mad3_BUB1_I Mad3/BU 23.4 2.6E+02 0.0056 23.3 5.8 27 139-165 97-123 (125)
484 COG5187 RPN7 26S proteasome re 23.1 7.1E+02 0.015 24.3 12.0 84 55-138 92-186 (412)
485 PRK01356 hscB co-chaperone Hsc 23.0 1.8E+02 0.0038 25.5 5.1 47 310-357 52-99 (166)
486 KOG2758 Translation initiation 23.0 4.2E+02 0.0092 26.1 7.8 40 130-169 118-157 (432)
487 smart00777 Mad3_BUB1_I Mad3/BU 22.7 1.9E+02 0.004 24.1 4.9 42 91-132 80-124 (125)
488 PF06288 DUF1040: Protein of u 22.3 30 0.00066 26.3 0.1 45 348-392 4-49 (86)
489 COG1747 Uncharacterized N-term 21.9 9.6E+02 0.021 25.4 13.1 118 58-180 86-244 (711)
490 KOG1811 Predicted Zn2+-binding 21.6 3E+02 0.0064 29.5 6.9 40 107-146 587-627 (1141)
491 PF09797 NatB_MDM20: N-acetylt 21.4 6.1E+02 0.013 25.0 9.3 42 90-131 199-241 (365)
492 PF08625 Utp13: Utp13 specific 21.1 1.1E+02 0.0024 26.1 3.3 44 307-357 65-112 (141)
493 PF06580 His_kinase: Histidine 20.7 1E+02 0.0022 23.3 2.8 45 339-383 3-47 (82)
494 COG5159 RPN6 26S proteasome re 20.4 8E+02 0.017 23.9 9.0 83 88-170 99-194 (421)
No 1
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=99.94 E-value=5e-27 Score=187.68 Aligned_cols=93 Identities=38% Similarity=0.670 Sum_probs=89.5
Q ss_pred CCCCCCHHHHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhcc-ccHHHHHHHHHhccCCCc
Q 014256 302 ITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT-GEVDLAIKYLEYLTMVPR 380 (428)
Q Consensus 302 ~~~P~~~~ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~l~~il~~l~~~~~-~~~~~~~~~L~~l~~~~R 380 (428)
|++|+|++||+++||+++++++.+|+||+.|+|+.||+||+++|++++|++||.+|++++. .++..|+++|++|++++|
T Consensus 1 p~~P~~~~eF~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~~~~~~~~~~i~~~L~~L~~~~R 80 (94)
T PF13877_consen 1 PPAPKNSYEFERDWRRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNEHFIPEDPEFIFEILEALSKVKR 80 (94)
T ss_pred CcCCCCHHHHHHHHHHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcCCCC
Confidence 5689999999999999999999999999999999999999999999999999999999887 678999999999999999
Q ss_pred hhHHHhccChhhHH
Q 014256 381 FDLVIMCLSLADKA 394 (428)
Q Consensus 381 F~~~~~~ls~~ek~ 394 (428)
|+|++|||+++||+
T Consensus 81 F~l~~~fl~~~eK~ 94 (94)
T PF13877_consen 81 FDLAVMFLSSSEKK 94 (94)
T ss_pred HHHHHHhcCHhhCC
Confidence 99999999999985
No 2
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.94 E-value=7.6e-26 Score=211.07 Aligned_cols=412 Identities=27% Similarity=0.391 Sum_probs=247.5
Q ss_pred ccchhhhhh----------hhhhcchhhhhhhhhcccchhhhhccChhhhhcCCCccc---cCCCCcchHHHHHhhhhc-
Q 014256 2 AKHNRDQAL----------DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN---SYSRNYDPVSHISSSLMN- 67 (428)
Q Consensus 2 ~~~~~~qa~----------~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~y---~~g~~~~Ai~~~~~al~~- 67 (428)
.+|+++++. +||.++.+++++++.+...-..- ..-+...| ..|.+.+.-.-++.-+..
T Consensus 11 q~qvrqna~e~Q~F~~DL~~WE~diK~KDkel~~Q~~~Pan~--------~~P~r~~FR~~ksGK~~~ssKK~Rs~I~~~ 82 (536)
T KOG4648|consen 11 QRQVRQNAREYQNFVKDLYSWEQDIKNKDKELQKQPLSPANK--------DLPVRSHFRTDKSGKESPSSKKARSPIEKQ 82 (536)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHhCCCCcccc--------CCchhhhcccCCCCCcCcchhhhhcchhhc
Confidence 367777776 99999999998877764111110 00111111 233443333333321110
Q ss_pred -CCCC-------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 014256 68 -EEST-------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138 (428)
Q Consensus 68 -~p~~-------~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p 138 (428)
-+-+ ..+..++..||.||++|+|++||.||.+++.++|. ++++.|||++|+++++|..|+.+|+.|+.+|.
T Consensus 83 dL~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 83 DLPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred cCCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 0000 01112689999999999999999999999999996 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchhhhH--hhhcccc---------
Q 014256 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL--EKYGKSG--------- 207 (428)
Q Consensus 139 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~~~~~~--~~~~~~~--------- 207 (428)
.+.++|.|+|.++..+|+..+|..+++.+|+|+|++.+++..+..+....++.|..+..... ...+...
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~ 242 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGY 242 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcch
Confidence 99999999999999999999999999999999999999988888877777666554432110 0000000
Q ss_pred ----ccccCccccccccccccCCc-------------------------cccccc-chhhhhcccccccc----c---cc
Q 014256 208 ----MKVNGHEVRAVRNTIQKTGV-------------------------AEIQDL-TISKKTENKNLRDE----S---KT 250 (428)
Q Consensus 208 ----~~~~~~~i~~v~~~~~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~----~---~~ 250 (428)
......-|..+.......+. ..+.+. +-+..+.-.++.+. + ++
T Consensus 243 ~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~ 322 (536)
T KOG4648|consen 243 KFSKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKP 322 (536)
T ss_pred hhhhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCc
Confidence 00000000000000000000 000000 00000000000000 0 00
Q ss_pred C-------CC-CCCCC-------Ccccccc--------Ccc-c--ccccccccc-cch---------hhH--HHhhhhhh
Q 014256 251 E-------GQ-RDGSG-------ANATHIS--------GLD-K--RNHRTKKAV-LDA---------SVQ--ELATRATS 292 (428)
Q Consensus 251 ~-------~~-~~~~~-------~~~~~~~--------~~~-~--~~~~~~~~~-~~~---------~~~--~~~~~~~~ 292 (428)
. .+ ...++ .+.++.+ +.+ + ......++. |.. .+| +++.....
T Consensus 323 ~~~T~~~~~P~~~~~~~~~sr~~~~ii~~~~~~~~~~~~~~~~~~V~~i~~~~~PP~~~i~~~~~~N~iQT~~i~~sss~ 402 (536)
T KOG4648|consen 323 TKQTAVKVAPAVETPKETETRKDTKIVPESDNEAKPSAPKKTAVEVPKVQTQVSPPKTTIERSPEVNTVQTEKIEQASSN 402 (536)
T ss_pred chhheeeeccccccchhhhhhhccccccccccccccCCccccccccCCCCCCCCCCcceeEecCCcceeeeeeccccccc
Confidence 0 00 00000 0001110 000 0 000000000 000 011 11111111
Q ss_pred HHHHHhc---cCCCCCCCHHHHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhcccc-HHHH
Q 014256 293 RAVAEAA---KNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGE-VDLA 368 (428)
Q Consensus 293 ~~~~~~~---~~~~~P~~~~ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~l~~il~~l~~~~~~~-~~~~ 368 (428)
.++...+ ..+.+|++..+|-..|..+.+ |. +|+||+.++-.++.+|.......+.|.+.++..+.+++++ +.-.
T Consensus 403 ~A~~~~PI~~~~~~A~T~T~~~~~s~~~~~~-P~-r~~~LK~~EV~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~K~~~~ 480 (536)
T KOG4648|consen 403 NAMSPSPIERFLPPAPTSTAQFHVTWKELSG-PQ-KYQYLKSIEVPNLCKILGAGFDSDTFADLLRTIHDFFVPNKEPNT 480 (536)
T ss_pred cCCCCCchhhhCCCCCCccchhcccHhhhcc-ch-hhhheeeeeccchhhhcccccchHHHHHHHhhhccccccCCCCcc
Confidence 1111111 246789999999999999977 33 9999999999999999999999999999999999999854 3334
Q ss_pred HHHHHhccCCCchhHHHhccChhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhhcc
Q 014256 369 IKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCL 426 (428)
Q Consensus 369 ~~~L~~l~~~~RF~~~~~~ls~~ek~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~y~~ 426 (428)
.-.|.-.++..-|.+..||++-.++..+..++..+. .++....--+.+|-.-|++
T Consensus 481 A~~~L~~~~~~~F~i~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~NL~~~~~~ 535 (536)
T KOG4648|consen 481 AAVLLEISKNDEFTILAMLMSAEEKKMVSSILNAIK---NWPSKNPAVLDNLFKEYGV 535 (536)
T ss_pred ceeeeccCCCchhhHHHHHHhhhccccHHHHHHhhc---CcccCCHHHHhhccHhhcc
Confidence 556677899999999999999999999988877665 2232223335566666654
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=161.67 Aligned_cols=119 Identities=42% Similarity=0.618 Sum_probs=113.2
Q ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256 72 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 150 (428)
Q Consensus 72 ~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~ 150 (428)
..+..++..|+-+++.++|.+|+..|++||+++|. +++|.|||.+|.++|.|+.|+++|+.||.+||.+.++|.|+|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 35667999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 014256 151 RKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190 (428)
Q Consensus 151 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 190 (428)
|..+|+|.+|+..|+++|.++|++...+..+..|...+++
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888776653
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=4.7e-18 Score=169.33 Aligned_cols=168 Identities=20% Similarity=0.221 Sum_probs=145.8
Q ss_pred hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256 34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA 111 (428)
Q Consensus 34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~ 111 (428)
..+++..+...++..| .+|..+-||..|++++...|+++.+ +.++|+++-..|+..+|..||.+++.+.|+ +.+++
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A--y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA--YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH--HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 5677777777777777 8999999999999999999999988 669999999999999999999999999998 88999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHH
Q 014256 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQL 181 (428)
Q Consensus 112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l 181 (428)
|+|.+|..+|.+++|...|..++...|..+.++.++|.+|..+|++++|+..|+.++++.|...++ .+..
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999987776 4567
Q ss_pred HHHHHHHHHHHHhchhhhHhhh
Q 014256 182 AEVKSLYEKEVFQKASKTLEKY 203 (428)
Q Consensus 182 ~~a~~~~~~a~~~~~~~~~~~~ 203 (428)
..|++.|.++|..+|..++...
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHh
Confidence 7788888888888887766443
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=2.2e-18 Score=171.69 Aligned_cols=165 Identities=21% Similarity=0.231 Sum_probs=150.2
Q ss_pred hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256 34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA 111 (428)
Q Consensus 34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~ 111 (428)
.++++..|+..+++++ ..|+..+|..+|.++|.+.|+..++ ++++|++|..+|+++.|...|.++++..|. +.++.
T Consensus 315 ~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada--m~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 315 LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA--MNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN 392 (966)
T ss_pred cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence 5688888999999998 8899999999999999999998877 669999999999999999999999999999 88999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHH
Q 014256 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQL 181 (428)
Q Consensus 112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l 181 (428)
|+|.+|-++|++++|+.+|+.|++++|..+.++.++|.+|..+|+.++|++.|.+++.++|...++. ++.
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999888873 456
Q ss_pred HHHHHHHHHHHHhchhhhH
Q 014256 182 AEVKSLYEKEVFQKASKTL 200 (428)
Q Consensus 182 ~~a~~~~~~a~~~~~~~~~ 200 (428)
.+|+..|+.++.++|..+.
T Consensus 473 ~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 473 PEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHHHHHHHHHccCCCCch
Confidence 7889999999999988764
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=9.6e-16 Score=132.49 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=121.5
Q ss_pred hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256 57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 135 (428)
Q Consensus 57 Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~ 135 (428)
-...|++++..+|+. +..+|.+++..|+|++|+.+|.+++.++|. ..+|+++|.++..+|++++|+..|.+++.
T Consensus 12 ~~~~~~~al~~~p~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET-----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 467899999999863 457899999999999999999999999998 99999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 014256 136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 191 (428)
Q Consensus 136 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a 191 (428)
++|.++.+++++|.++..+|++++|+..|.+++.+.|+++........+...++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~~ 142 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTL 142 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888887776643
No 7
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.9e-15 Score=145.03 Aligned_cols=152 Identities=32% Similarity=0.520 Sum_probs=134.7
Q ss_pred hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-
Q 014256 39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA----------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT- 106 (428)
Q Consensus 39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a----------~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~- 106 (428)
..++..-|.++ ..++.+.|+.+|+++|.++|....+ ..++..||..++.|+|..|.++|+.+|.++|+
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 34554455555 8889999999999999999987543 23789999999999999999999999999997
Q ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256 107 ----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182 (428)
Q Consensus 107 ----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 182 (428)
+.+|.|||.+...+|+..+|+.+|+.|+.+||.+.+++.++|.|+..+++|++|+++|++++++.-+ .+.+..+.
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999877 77777777
Q ss_pred HHHHHHHHH
Q 014256 183 EVKSLYEKE 191 (428)
Q Consensus 183 ~a~~~~~~a 191 (428)
+|...+++.
T Consensus 362 ~A~~aLkkS 370 (486)
T KOG0550|consen 362 EAQLALKKS 370 (486)
T ss_pred HHHHHHHHh
Confidence 777766654
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.63 E-value=3.4e-15 Score=159.11 Aligned_cols=155 Identities=12% Similarity=0.169 Sum_probs=124.9
Q ss_pred hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256 40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY 117 (428)
Q Consensus 40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~ 117 (428)
.++..+|.++ ..|++++|+..|++++..+|.+..+ +..+|.++...|++++|+.+|.+++..+|+ +.+|+++|.++
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~--~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS--YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444455555 6788888888888888888876666 668888888888888888888888888887 88888888888
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHH
Q 014256 118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSL 187 (428)
Q Consensus 118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~ 187 (428)
+.+|++++|+.+|++++.++|++..+++++|.++..+|++++|+..|++++.+.|+++.+ .+++.+|+..
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888887765 3456667777
Q ss_pred HHHHHHhch
Q 014256 188 YEKEVFQKA 196 (428)
Q Consensus 188 ~~~a~~~~~ 196 (428)
|++++.++|
T Consensus 490 ~~~Al~l~p 498 (615)
T TIGR00990 490 FDTAIELEK 498 (615)
T ss_pred HHHHHhcCC
Confidence 777776654
No 9
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.9e-15 Score=147.24 Aligned_cols=151 Identities=28% Similarity=0.427 Sum_probs=133.2
Q ss_pred hhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCC--C----------------------chHHHHHHHHHHHHHhcCHHH
Q 014256 38 LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEES--T----------------------PDATSEKELGNECFKQKKFKE 92 (428)
Q Consensus 38 ~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~--~----------------------~~a~~~~~lg~~~~~~g~~~~ 92 (428)
...++.++|.+| +.++++.|+.+|.+++..... . ..+...+..|+.+|+.|+|..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 445667788888 889999999999998876433 0 012225778999999999999
Q ss_pred HHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 93 AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 93 Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
|+.+|+++|..+|+ +.+|.|||.||.+++.+..|+.+|+.+++++|++.++|+|-|.++..+.+|+.|.+.|.+++.++
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHH
Q 014256 172 PQNQEIKKQLAEVKSLY 188 (428)
Q Consensus 172 P~~~~~~~~l~~a~~~~ 188 (428)
|++.++...+.++....
T Consensus 457 p~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 457 PSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred chhHHHHHHHHHHHHHh
Confidence 99999887777766543
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.60 E-value=7.3e-15 Score=156.55 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=141.5
Q ss_pred cCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256 43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 120 (428)
Q Consensus 43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~ 120 (428)
..++.++ ..|++++|+..|++++..+|.+..+ ++.+|.+++..|+|++|+.+|++++.++|+ ..++.++|.++..+
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDI--YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 3344445 7899999999999999999998777 789999999999999999999999999998 88899999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-----------------HHHHHH
Q 014256 121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-----------------KKQLAE 183 (428)
Q Consensus 121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~-----------------~~~l~~ 183 (428)
|++++|+..|.+++..+|.++.++..+|.++..+|++++|+..|++++.++|.+... .+++.+
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999999999874221 367888
Q ss_pred HHHHHHHHHHhchhhhHhh
Q 014256 184 VKSLYEKEVFQKASKTLEK 202 (428)
Q Consensus 184 a~~~~~~a~~~~~~~~~~~ 202 (428)
|...+++++.++|......
T Consensus 527 A~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAV 545 (615)
T ss_pred HHHHHHHHHhcCCCcHHHH
Confidence 9999999998887765433
No 11
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=8.4e-16 Score=155.28 Aligned_cols=167 Identities=24% Similarity=0.251 Sum_probs=148.7
Q ss_pred hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCC----------------------------------chHHHHHHHHHHH
Q 014256 40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST----------------------------------PDATSEKELGNEC 84 (428)
Q Consensus 40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~----------------------------------~~a~~~~~lg~~~ 84 (428)
..+..+|.+| .+++|++|..+|+.+-...|-. ++. |..+||||
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPes--Wca~GNcf 431 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPES--WCALGNCF 431 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHH--HHHhcchh
Confidence 4556777777 8888888888888877665532 223 88999999
Q ss_pred HHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014256 85 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED 163 (428)
Q Consensus 85 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~ 163 (428)
--+++++.|+.||++|++++|. +-+|.-+|.=+.....|+.|..+|..|+.++|.+..|||.+|.+|.++++++.|.-+
T Consensus 432 SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH
Confidence 9999999999999999999998 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhHhhhccccc
Q 014256 164 SEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTLEKYGKSGM 208 (428)
Q Consensus 164 ~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ 208 (428)
|++|+.++|.+..+ .+..++|+..|++|+.++|.++..+..++..
T Consensus 512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 512 FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 99999999998765 5778899999999999999999877766543
No 12
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.56 E-value=1.4e-13 Score=117.14 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=115.5
Q ss_pred HHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256 59 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137 (428)
Q Consensus 59 ~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~ 137 (428)
+.|.+++..+|.+..+ ...+|..++..|++++|+.+|++++..+|. ..+|.++|.++..+|++++|+..+.+++..+
T Consensus 4 ~~~~~~l~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQ--IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHH--HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4688999999987766 679999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186 (428)
Q Consensus 138 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 186 (428)
|+++..++.+|.++...|++++|+..|+++++++|++.........+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876554444443
No 13
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.56 E-value=2.9e-14 Score=133.94 Aligned_cols=97 Identities=23% Similarity=0.257 Sum_probs=88.1
Q ss_pred CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256 44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR 121 (428)
Q Consensus 44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~ 121 (428)
.-|+-| ++|.|++||.+|.+.+..+|.++.. +-+++.+|++.+.|..|...++.++.++.. ..+|..||.+-..+|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~--~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY--HINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccc--hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 344444 8999999999999999999988766 669999999999999999999999999987 889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHH
Q 014256 122 RFQEAEDDCTEALNLDDRYIK 142 (428)
Q Consensus 122 ~~~eA~~~~~~al~l~p~~~~ 142 (428)
...+|.++|+.++++.|.+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 999999999999999998754
No 14
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.55 E-value=1.6e-13 Score=124.95 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=117.9
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH-HHhcC--HHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY-LKLRR--FQE 125 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~-~~~~~--~~e 125 (428)
..++.++++..+++++..+|++..+ |..+|.+|...|++++|+.+|.+++.++|+ +.++.++|.++ ...|+ +++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~--w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQ--WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4577789999999999999998887 889999999999999999999999999998 99999999985 67787 599
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 126 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 126 A~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
|...++++++++|+++.+++.+|.++..+|+|++|+..|+++++++|.+..-.
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999999766543
No 15
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.8e-14 Score=145.80 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=144.3
Q ss_pred cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHH
Q 014256 36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR 113 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nl 113 (428)
++--+....+|++| -+++++.|+++|.+++.++|++..+ +-.+|.-+....+|+.|..+|+.|+..+|. ..+|+.+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa--yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA--YTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh--hhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 34445778899999 8899999999999999999998877 559999999999999999999999999998 9999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHH
Q 014256 114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAE 183 (428)
Q Consensus 114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~ 183 (428)
|++|+++++++.|+-.|.+|+.++|.+.......|..+.++|+.++|+..|++|+.++|.++-. .+.+.+
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999998765 355667
Q ss_pred HHHHHHHHHHhchhhhH
Q 014256 184 VKSLYEKEVFQKASKTL 200 (428)
Q Consensus 184 a~~~~~~a~~~~~~~~~ 200 (428)
|...+++..+.-|....
T Consensus 576 al~~LEeLk~~vP~es~ 592 (638)
T KOG1126|consen 576 ALQELEELKELVPQESS 592 (638)
T ss_pred HHHHHHHHHHhCcchHH
Confidence 77777766665555443
No 16
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=1.8e-13 Score=119.95 Aligned_cols=106 Identities=37% Similarity=0.618 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 014256 73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 146 (428)
Q Consensus 73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~ 146 (428)
.+..++..||-+|+.|+|++|...|..||.+.|. ..+|.|+|.|+++++.++.|+.+|++||+++|++.+|+.|
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R 173 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER 173 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence 4555889999999999999999999999999986 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 147 RATARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 147 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
+|.+|..+.+|++|+.+|++++.++|...++.
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 99999999999999999999999999987664
No 17
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.8e-13 Score=130.99 Aligned_cols=118 Identities=35% Similarity=0.501 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-------c---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-------T---------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-------~---------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~ 137 (428)
+...+..|+.||+.|+|..|+..|.+++..-. . ..++.|+|.||+++++|.+|+..|+++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 44478999999999999999999999987532 1 2578999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 014256 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 191 (428)
Q Consensus 138 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a 191 (428)
|.|++++||+|.++..+|.|+.|+.+|+++++++|+|..+..++..+.+.+++.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987777666655443
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.51 E-value=4.8e-13 Score=129.65 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=116.0
Q ss_pred cCCCCcchHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA 126 (428)
..+..+.++..+.+++...+.. ..+..++.+|.+|...|++.+|+..|+++++++|+ +.+|+++|.++..+|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456688999999999754422 23556899999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
+..|.++++++|++..+++++|.++...|++++|+..|+++++++|+++.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999999999999873
No 19
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.49 E-value=6.9e-13 Score=131.66 Aligned_cols=114 Identities=32% Similarity=0.457 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg 155 (428)
+...|+.++..|+|++|+.+|.+++.++|+ +.+|+++|.+|+.+|+|++|+.++.+++.++|.++.+|+++|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 668899999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 014256 156 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190 (428)
Q Consensus 156 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 190 (428)
+|++|+..|++++.++|++..+...+..+...+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998888887776643
No 20
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.49 E-value=1.1e-12 Score=112.50 Aligned_cols=114 Identities=10% Similarity=-0.016 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 154 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l 154 (428)
..+.+|..++..|++++|...|+-+..++|. ...|+++|.|+..+|+|++|+..|.+|+.++|+++.+++++|.|+..+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3789999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256 155 GKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 189 (428)
Q Consensus 155 g~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 189 (428)
|+.+.|...|+.++.+...+++......+|..++.
T Consensus 117 G~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 117 DNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred CCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 99999999999999998655555444455555543
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=8.4e-13 Score=120.96 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=121.8
Q ss_pred hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256 41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 118 (428)
Q Consensus 41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~ 118 (428)
+...++..| ..|++++|+..|++++..+|.+..+ +..+|.++...|++++|+..|.+++...|. ..++.++|.++.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLA--YLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 344455556 7888999999999998888877655 668899999999999999999999988887 778888999999
Q ss_pred HhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHH
Q 014256 119 KLRRFQEAEDDCTEALNLD--DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKS 186 (428)
Q Consensus 119 ~~~~~~eA~~~~~~al~l~--p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~ 186 (428)
..|++++|+..|.+++... +.....++.+|.++...|++++|...+.+++..+|++.... +++.+|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988753 45667888889999999999999999999999988876652 34555555
Q ss_pred HHHHHHHhc
Q 014256 187 LYEKEVFQK 195 (428)
Q Consensus 187 ~~~~a~~~~ 195 (428)
.+++++...
T Consensus 191 ~~~~~~~~~ 199 (234)
T TIGR02521 191 YLERYQQTY 199 (234)
T ss_pred HHHHHHHhC
Confidence 565555543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.48 E-value=7.7e-13 Score=145.68 Aligned_cols=147 Identities=9% Similarity=-0.002 Sum_probs=127.8
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..|++++|+..|++++..+|+ ..+ +.++|.++.+.|++++|+.+|.+++.++|+ +.+++++|.++...|++++|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~-~~a--~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-ANA--YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 349999999999999999985 444 779999999999999999999999999998 8899999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhh
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK 198 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~ 198 (428)
.|.+++.++|+++.+++++|.++..+|++++|+..|++++.++|++..+ ..++..+.+.+.++...++..
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 9999999999999999999999999999999999999999999988665 344666666666666666555
Q ss_pred h
Q 014256 199 T 199 (428)
Q Consensus 199 ~ 199 (428)
.
T Consensus 745 ~ 745 (987)
T PRK09782 745 S 745 (987)
T ss_pred h
Confidence 4
No 23
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=9.2e-13 Score=128.32 Aligned_cols=151 Identities=21% Similarity=0.173 Sum_probs=134.8
Q ss_pred hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256 41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 118 (428)
Q Consensus 41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~ 118 (428)
....+|+.| -.++.++|+.+|++++++||....+ |-.+|.-|+..++-..|+++|++|++++|. ..+|+.+|++|-
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a--WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA--WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH--HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 336677778 7788999999999999999998888 669999999999999999999999999998 999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHH
Q 014256 119 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLY 188 (428)
Q Consensus 119 ~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~ 188 (428)
.++...=|+-.|.+|+.+.|.++..|.-+|.||..+++.++|+..|.+++...-.+..+. +.+.+|..+|
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887665553 4455566666
Q ss_pred HHHHH
Q 014256 189 EKEVF 193 (428)
Q Consensus 189 ~~a~~ 193 (428)
.+.+.
T Consensus 490 ek~v~ 494 (559)
T KOG1155|consen 490 EKYVE 494 (559)
T ss_pred HHHHH
Confidence 65554
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=7.8e-13 Score=139.08 Aligned_cols=143 Identities=10% Similarity=0.002 Sum_probs=126.1
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 120 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~---------g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~ 120 (428)
.+++++|+.+|++++..+|++..+ +..+|.++... +++++|+..++++++++|+ +.+|..+|.++...
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a--~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAP--YCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 355789999999999999998776 66888877644 3489999999999999999 99999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHH
Q 014256 121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEK 190 (428)
Q Consensus 121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~ 190 (428)
|++++|+..|++++.++|+++.+++.+|.++...|++++|+..++++++++|.+... .+.+++|...+.+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997644 2445777777777
Q ss_pred HHHhc
Q 014256 191 EVFQK 195 (428)
Q Consensus 191 a~~~~ 195 (428)
++...
T Consensus 432 ~l~~~ 436 (553)
T PRK12370 432 LRSQH 436 (553)
T ss_pred HHHhc
Confidence 76654
No 25
>PLN02789 farnesyltranstransferase
Probab=99.46 E-value=1e-12 Score=128.02 Aligned_cols=169 Identities=12% Similarity=0.021 Sum_probs=144.2
Q ss_pred cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHccCCc-HHHHHH
Q 014256 36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYAN 112 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g-~~~~Ai~~y~~al~~~p~-~~~~~n 112 (428)
++|.+++..+...+ ..+.+++|+..+.+++.++|.+..+ |..+|.++...| ++++|+.++.+++..+|+ ..+|++
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~yta--W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTV--WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 45556665555556 6788999999999999999999888 889999999998 689999999999999999 889999
Q ss_pred HHHHHHHhcCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH---------
Q 014256 113 RAMAYLKLRRF--QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL--------- 181 (428)
Q Consensus 113 la~~~~~~~~~--~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l--------- 181 (428)
++.++.++|+. ++++..+++++.++|+|..+|..+|.++..+|+|++|++.+.++++++|.|..++...
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc
Confidence 99999999874 7889999999999999999999999999999999999999999999999998874332
Q ss_pred --------HHHHHHHHHHHHhchhhhHhhhccc
Q 014256 182 --------AEVKSLYEKEVFQKASKTLEKYGKS 206 (428)
Q Consensus 182 --------~~a~~~~~~a~~~~~~~~~~~~~~~ 206 (428)
+....+..++|..+|.+...+....
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~ 224 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPRNESPWRYLR 224 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 2345556677877877766554443
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=2.7e-12 Score=117.62 Aligned_cols=140 Identities=18% Similarity=0.091 Sum_probs=124.4
Q ss_pred ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC--c-HHHHHH
Q 014256 37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP--T-AVAYAN 112 (428)
Q Consensus 37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p--~-~~~~~n 112 (428)
+...+...++..| ..|++++|+..|.+++...|.+..+ +..+|.+++..|++++|+..|.+++...+ . ...+.+
T Consensus 63 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 63 DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV--LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 3334555566666 8899999999999999999987766 77999999999999999999999998643 3 678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
+|.++...|++++|...|.+++..+|.+..++..+|.++...|++++|...+++++.+.|.+....
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 206 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL 206 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988776654
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.45 E-value=1e-12 Score=144.64 Aligned_cols=149 Identities=17% Similarity=0.126 Sum_probs=135.0
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~ 129 (428)
..|++++|+.+|++++..+|..... +..++..+...|++++|+.+|.++++++|++.+|.++|.++.++|++++|+..
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l--~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNAL--YWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7889999999999999998876544 44666667777999999999999999999988899999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhh
Q 014256 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT 199 (428)
Q Consensus 130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~ 199 (428)
|.+++.++|+++.++.++|.++...|++++|+..|+++++++|+++.+ .+++++|...|++++..+|...
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999999887 3567789999999999998765
Q ss_pred H
Q 014256 200 L 200 (428)
Q Consensus 200 ~ 200 (428)
.
T Consensus 712 ~ 712 (987)
T PRK09782 712 L 712 (987)
T ss_pred h
Confidence 4
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=1.8e-12 Score=136.25 Aligned_cols=144 Identities=14% Similarity=0.037 Sum_probs=125.7
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHH
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~ 129 (428)
.+++++|+..+++++..+|++..+ +..+|.++...|++++|+.+|+++++++|+ +.+|+++|.++..+|++++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQA--LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 355789999999999999998877 779999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCcHHHH----------HHHHHHHHHHHHHHHhch
Q 014256 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE-PQNQEIK----------KQLAEVKSLYEKEVFQKA 196 (428)
Q Consensus 130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~-P~~~~~~----------~~l~~a~~~~~~a~~~~~ 196 (428)
++++++++|.++.+++.++.++...|++++|+..+++++... |+++.+. +++++|...+.+.....|
T Consensus 395 ~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 395 INECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 999999999999888788888888999999999999999875 6676642 445666666665544443
No 29
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=9.8e-13 Score=113.66 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=100.8
Q ss_pred Cccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCH
Q 014256 46 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 123 (428)
Q Consensus 46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~ 123 (428)
|..+ ..|++++|+.+|.+++..+|.+..+ +..+|.++...|+|++|+.+|.+++.++|+ +.+++++|.|+..+|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRA--HIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 4444 8899999999999999999998877 789999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256 124 QEAEDDCTEALNLDDRYIKAYSRRATARKELG 155 (428)
Q Consensus 124 ~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg 155 (428)
++|+..|.+++.++|+++.++.++|.+...++
T Consensus 109 ~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 109 GLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876553
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.43 E-value=1.7e-12 Score=138.98 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=129.6
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHH----HHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKE----AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~----Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~ 124 (428)
..|++++|+..|.+++..+|.+..+ +..+|..+...|++++ |+..|++++.++|+ +.++.++|.++...|+++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~--~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAAL--RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 6788999999999999998887666 6789999999999985 79999999999998 888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHh
Q 014256 125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQ 194 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~ 194 (428)
+|+..+++++.++|+++.++..+|.++..+|++++|+..|++++..+|++... .++.++|...|++++..
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999987543 34677888889888888
Q ss_pred chhhhH
Q 014256 195 KASKTL 200 (428)
Q Consensus 195 ~~~~~~ 200 (428)
+|....
T Consensus 382 ~P~~~~ 387 (656)
T PRK15174 382 RASHLP 387 (656)
T ss_pred Chhhch
Confidence 877653
No 31
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=9.8e-13 Score=118.10 Aligned_cols=135 Identities=17% Similarity=0.100 Sum_probs=120.3
Q ss_pred hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256 41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 118 (428)
Q Consensus 41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~ 118 (428)
+.-.++..| ..|++..|...++++|+.+|+...+ |..++..|.+.|+.+.|-+.|++++.++|+ ..+.+|.|..++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a--~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLA--HLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 334555556 8899999999999999999998888 669999999999999999999999999998 899999999999
Q ss_pred HhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 119 KLRRFQEAEDDCTEALNL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 119 ~~~~~~eA~~~~~~al~l--~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
.+|+|++|...|++|+.. .+.-+..+-|+|.|-.+.|+++.|..+|+++++++|+++..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~ 175 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA 175 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH
Confidence 999999999999999864 24557889999999999999999999999999999998776
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.3e-12 Score=126.23 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=144.6
Q ss_pred hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256 39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA 116 (428)
Q Consensus 39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~ 116 (428)
..++..-|..+ -.|++-+|...|+.++.++|.+... +..+|..|....+-++-...|+++..++|. +.+|+.||..
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l--yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL--YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH--HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 34555555555 7899999999999999999988776 668999999999999999999999999998 9999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHH
Q 014256 117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKS 186 (428)
Q Consensus 117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~ 186 (428)
++-+++|++|+.+|++++.++|.++.+|..++.+.+++++++++...|+.+.+..|+.+++ ++++..|.+
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887 678889999
Q ss_pred HHHHHHHhchh
Q 014256 187 LYEKEVFQKAS 197 (428)
Q Consensus 187 ~~~~a~~~~~~ 197 (428)
.|++++.+.|.
T Consensus 484 ~YD~ai~LE~~ 494 (606)
T KOG0547|consen 484 QYDKAIELEPR 494 (606)
T ss_pred HHHHHHhhccc
Confidence 99999998866
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.2e-12 Score=128.19 Aligned_cols=163 Identities=17% Similarity=0.217 Sum_probs=147.6
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..++..+-...|+++..++|.++.. ++.+|..++-.++|++|+..|++++.++|. ...|..+|.+.++++++++++.
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~dv--YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENPDV--YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCCch--hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999988 889999999999999999999999999999 8889999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------cHHH-----------HHHHHHHHHHHHHH
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ------NQEI-----------KKQLAEVKSLYEKE 191 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~------~~~~-----------~~~l~~a~~~~~~a 191 (428)
.|+.+++..|+.+.+|...|.++...++|+.|+..|.+++.|+|. +... .+.+..|..++.++
T Consensus 450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA 529 (606)
T KOG0547|consen 450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKA 529 (606)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 3221 57889999999999
Q ss_pred HHhchhhhHhhhccccccccCcc
Q 014256 192 VFQKASKTLEKYGKSGMKVNGHE 214 (428)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~ 214 (428)
++++|.....+.+.+....+...
T Consensus 530 ~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 530 IELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred HccCchHHHHHHHHHHHHHHHhh
Confidence 99999887776666544444333
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=2.6e-12 Score=124.56 Aligned_cols=128 Identities=19% Similarity=0.098 Sum_probs=110.1
Q ss_pred hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256 40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY 117 (428)
Q Consensus 40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~ 117 (428)
..+...|..| ..|++++|+..|.+++..+|++..+ +..+|..+...|+|++|+..|.++++++|+ ..+|.++|.++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADA--YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455556666 8899999999999999999998877 889999999999999999999999999999 88999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
...|++++|+.+|++++.++|+++.... ........+++++|+..|.+.+..
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999974222 122344577899999999776654
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6.1e-12 Score=122.68 Aligned_cols=136 Identities=19% Similarity=0.133 Sum_probs=129.4
Q ss_pred hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256 34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA 111 (428)
Q Consensus 34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~ 111 (428)
.++++..+...+|.-| .+++...|+..|++++.++|.+..+ |+.+|+.|.-.+-..=|+-+|++|+...|+ ...|.
T Consensus 359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA--WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~ 436 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA--WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV 436 (559)
T ss_pred cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH--HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH
Confidence 5677888888999999 8999999999999999999998888 999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
.+|.||.++++.++|+.+|.+|+.....+..++.++|.+|.+++++++|...|++.+...
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999843
No 36
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.38 E-value=7e-12 Score=134.24 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=134.8
Q ss_pred hhcCCCccc-cCCCCcc----hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH
Q 014256 41 AKKPSPSGN-SYSRNYD----PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA 114 (428)
Q Consensus 41 a~~~~~~~y-~~g~~~~----Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla 114 (428)
+...+|..| ..|++++ |+..|++++..+|++..+ +..+|.++...|++++|+.+|++++.++|+ +.++.++|
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a--~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI--VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 334455556 7899986 899999999999997766 779999999999999999999999999999 88999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHh
Q 014256 115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ 194 (428)
Q Consensus 115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~ 194 (428)
.+|...|++++|+..|.+++..+|.+..++..+|.++..+|++++|+..|+++++++|++. ...+.+|...|.+++..
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~--~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL--PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--hhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888899999999999999999999999999875 35566888888887765
Q ss_pred c
Q 014256 195 K 195 (428)
Q Consensus 195 ~ 195 (428)
-
T Consensus 404 ~ 404 (656)
T PRK15174 404 V 404 (656)
T ss_pred c
Confidence 4
No 37
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=1e-11 Score=111.55 Aligned_cols=138 Identities=20% Similarity=0.137 Sum_probs=122.2
Q ss_pred ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHH
Q 014256 37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYA 111 (428)
Q Consensus 37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~ 111 (428)
++..+...++..| ..|+.+.|-+.|++++.++|++.++ +++.|..++.+|+|++|...|.+++. +|. +..|-
T Consensus 67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV--LNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~e 143 (250)
T COG3063 67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV--LNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLE 143 (250)
T ss_pred ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch--hhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhh
Confidence 3333334444446 8999999999999999999998888 88999999999999999999999998 444 78999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
|+|.|.+++|+++.|...+++++.++|+++.+...++..++..|+|..|...++....--+-..+.
T Consensus 144 N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~s 209 (250)
T COG3063 144 NLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAES 209 (250)
T ss_pred hhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999988777655544
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.35 E-value=1.1e-11 Score=140.98 Aligned_cols=130 Identities=16% Similarity=0.169 Sum_probs=118.1
Q ss_pred Cccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H--H------------H
Q 014256 46 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A--V------------A 109 (428)
Q Consensus 46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~--~------------~ 109 (428)
|..+ ..|++++|+..|++++..+|.+..+ +..+|.+++..|++++|+.+|+++++.+|+ . . .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a--~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEA--LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 4445 7899999999999999999998777 779999999999999999999999999986 2 1 1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 110 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 110 ~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
...+|.+++..|++++|+..|.+++.++|+++.+++.+|.++...|++++|+..|+++++++|++..+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 23568899999999999999999999999999999999999999999999999999999999998765
No 39
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.34 E-value=1.5e-11 Score=139.91 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=137.9
Q ss_pred cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHH------------HHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256 36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDAT------------SEKELGNECFKQKKFKEAIDCYSRSIA 102 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~------------~~~~lg~~~~~~g~~~~Ai~~y~~al~ 102 (428)
++...++..+|.+| ..|++++|+.+|++++..+|.+.... ....+|.++...|++++|+.+|++++.
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~ 379 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ 379 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344445555566 89999999999999999998765321 234568899999999999999999999
Q ss_pred cCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------------------------------
Q 014256 103 LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA------------------------------- 150 (428)
Q Consensus 103 ~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~------------------------------- 150 (428)
++|+ ..++.++|.++..+|++++|+..|++++.++|.+..++..++.+
T Consensus 380 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9998 88999999999999999999999999999999998776655544
Q ss_pred -----------HHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhHh
Q 014256 151 -----------RKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTLE 201 (428)
Q Consensus 151 -----------~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~~ 201 (428)
+...|++++|+..|+++++++|+++.+ .+++++|...+++++..+|.++..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~ 531 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ 531 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 446799999999999999999998765 356788889999998888876653
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=9.2e-12 Score=123.61 Aligned_cols=109 Identities=36% Similarity=0.543 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg 155 (428)
++..||..+..|+|+.|+.+|+.+|.++|. ...|.|+..||..+|+|++|+.+..+++++.|+.+++|.+.|.++..+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 678999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256 156 KLKESIEDSEFALRLEPQNQEIKKQLAEVK 185 (428)
Q Consensus 156 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~ 185 (428)
+|++|+..|.+.|+.+|+|..+...+.+|.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999988888876
No 41
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.31 E-value=3.4e-11 Score=120.78 Aligned_cols=154 Identities=16% Similarity=0.068 Sum_probs=89.6
Q ss_pred hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc------HHHHHHHH
Q 014256 42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRA 114 (428)
Q Consensus 42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~nla 114 (428)
+..++..| ..|++++|+..|.+++..+|....+ +..++.++...|++++|+..|.+++...|. ...+.++|
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGA--LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHH--HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34445555 5566666666666666655544433 446666666666666666666666665543 12345566
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-H----------HHHHHH
Q 014256 115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE-I----------KKQLAE 183 (428)
Q Consensus 115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~-~----------~~~l~~ 183 (428)
.++...|++++|+..|.+++..+|++..+++.+|.++...|++++|+..|++++..+|.+.. + .+++++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666666666666666666666666666666666666666666555421 1 234555
Q ss_pred HHHHHHHHHHhchh
Q 014256 184 VKSLYEKEVFQKAS 197 (428)
Q Consensus 184 a~~~~~~a~~~~~~ 197 (428)
|...+++++...|.
T Consensus 268 A~~~l~~~~~~~p~ 281 (389)
T PRK11788 268 GLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHHHHHHhCCC
Confidence 55555555555543
No 42
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.30 E-value=3.3e-11 Score=120.88 Aligned_cols=163 Identities=15% Similarity=0.066 Sum_probs=132.6
Q ss_pred cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256 36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA 111 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~--~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~ 111 (428)
++...+...++..| ..|++++|+..+++++...+... ....+..+|.+|...|++++|+.+|.++++.+|. ..++.
T Consensus 66 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 145 (389)
T PRK11788 66 PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQ 145 (389)
T ss_pred cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHH
Confidence 34445666777777 88999999999999888643221 2344778999999999999999999999998887 77889
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------
Q 014256 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYI-----KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI--------- 177 (428)
Q Consensus 112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~-----~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~--------- 177 (428)
.++.++...|++++|+..+.+++..+|.+. ..+..+|.++...|++++|+..|+++++++|++..+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 225 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLAL 225 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH
Confidence 999999999999999999999998887653 356778999999999999999999999999887654
Q ss_pred -HHHHHHHHHHHHHHHHhchhh
Q 014256 178 -KKQLAEVKSLYEKEVFQKASK 198 (428)
Q Consensus 178 -~~~l~~a~~~~~~a~~~~~~~ 198 (428)
.+++.+|...+++++..+|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhh
Confidence 356788888888888877654
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.29 E-value=4.3e-11 Score=111.78 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=114.7
Q ss_pred hcCCCccc-cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHH
Q 014256 42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAM 115 (428)
Q Consensus 42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~ 115 (428)
+-..|..+ ..|++++|+..|++++..+|.... ...++.+|.+++..|++++|+..|.++++.+|+ ..+++.+|.
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~ 115 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGL 115 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHH
Confidence 33444444 889999999999999999997653 234789999999999999999999999999987 347899999
Q ss_pred HHHHh--------cCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 116 AYLKL--------RRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 116 ~~~~~--------~~~~eA~~~~~~al~l~p~~~~a~-----------------~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
++... |++++|+..+.+++..+|++..++ +.+|.++...|++.+|+..|++++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 116 SNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99987 889999999999999999986442 46788899999999999999999999
Q ss_pred CCCcH
Q 014256 171 EPQNQ 175 (428)
Q Consensus 171 ~P~~~ 175 (428)
.|+.+
T Consensus 196 ~p~~~ 200 (235)
T TIGR03302 196 YPDTP 200 (235)
T ss_pred CCCCc
Confidence 88754
No 44
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2.3e-11 Score=113.49 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=101.1
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
+..++|.+|+..|.++|.++|.++.- |.+++.+|.+.|.|+.|++.+..+|.+||+ ..+|..+|.+|+.+|+|++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVy--ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVY--YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchH--HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 36788899999999999999997755 779999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 014256 128 DDCTEALNLDDRYIKAYSRRATARKELGKLK 158 (428)
Q Consensus 128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~ 158 (428)
+.|.+||.++|++...+-+|..+...++...
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988888765
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.28 E-value=8e-11 Score=125.31 Aligned_cols=135 Identities=8% Similarity=-0.033 Sum_probs=125.7
Q ss_pred hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256 39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA 116 (428)
Q Consensus 39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~ 116 (428)
..++..++... ..|.+++|...++.+++..|++..+ +.+++.++.+.+++++|+..+++++..+|+ +.+++.+|.+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a--~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA--FILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH--HHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 45566666666 8999999999999999999999888 669999999999999999999999999999 9999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
+.++|+|++|+..|++++..+|+++.++..+|.+++..|+.++|...|++++.....-.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 99999999999999999999999999999999999999999999999999999876544
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.8e-11 Score=119.79 Aligned_cols=135 Identities=22% Similarity=0.255 Sum_probs=104.7
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC----c----HHHHHHHHHHHHHhc
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP----T----AVAYANRAMAYLKLR 121 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p----~----~~~~~nla~~~~~~~ 121 (428)
..+++.-|..+|.+++.+.|.++-. +..+|.+.+..+.|.+|+.+|+.++..-+ . ...+.|+|.++.+++
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv--~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLV--LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchh--hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 4677777888888888888887766 67888888888888888888888874322 1 345788888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186 (428)
Q Consensus 122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 186 (428)
+|++|+..++++|.+.|.++.++..+|.+|..+|+++.|+++|.++|.+.|++.-+..-+..|++
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888887666554444443
No 47
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.25 E-value=8.4e-11 Score=128.98 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=124.3
Q ss_pred CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256 44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR 121 (428)
Q Consensus 44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~ 121 (428)
..|.+| ..|++++|+..|.+++..+|....+ +..+|.+++..|+|++|+..+.+++..+|. ..++..+|.++...|
T Consensus 130 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 207 (899)
T TIGR02917 130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Confidence 334444 6788889999999998888877666 668888888888899999888888888887 778888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHH
Q 014256 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKE 191 (428)
Q Consensus 122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a 191 (428)
++++|+..|.+++..+|.++.+++.++.++...|++++|...+..+++..|++... .+++.+|...+.++
T Consensus 208 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 287 (899)
T TIGR02917 208 NIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDA 287 (899)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88889888888888888888888888888888888888888888888888876544 34567777777777
Q ss_pred HHhchhh
Q 014256 192 VFQKASK 198 (428)
Q Consensus 192 ~~~~~~~ 198 (428)
+..+|..
T Consensus 288 l~~~~~~ 294 (899)
T TIGR02917 288 LKSAPEY 294 (899)
T ss_pred HHhCCCc
Confidence 7766654
No 48
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.25 E-value=2.4e-10 Score=101.34 Aligned_cols=125 Identities=16% Similarity=0.084 Sum_probs=101.7
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQE 125 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~e 125 (428)
..+.+..+...+...+..++....+..+..+|.++...|+|++|+..|.+++.+.|+ +.+|.++|.++..+|++++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e 90 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK 90 (168)
T ss_pred cccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence 334566777777777677777777888999999999999999999999999988665 4589999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCc
Q 014256 126 AEDDCTEALNLDDRYIKAYSRRATARK-------ELGKLK-------ESIEDSEFALRLEPQN 174 (428)
Q Consensus 126 A~~~~~~al~l~p~~~~a~~~lg~~~~-------~lg~~~-------eA~~~~~~al~l~P~~ 174 (428)
|+..|.+++.++|.+..++.++|.++. .+|+++ +|+..|++++..+|.+
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999 556655 3344444455555543
No 49
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.24 E-value=9.6e-11 Score=128.50 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=60.3
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~ 129 (428)
..|++++|+..+..+....|..... +..+|.+++..|++++|+..|.+++...|+...+.++|.++...|++++|+..
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALG--FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHH--HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 4444555555555544444443333 33444455555555555555555544444433444444444445555555555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
+.+++..+|++..+++.+|.++..+|++++|+..|++++...|+++.
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence 55554444444444444555454455555555555555444444443
No 50
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=3.7e-10 Score=100.56 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=107.8
Q ss_pred HHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256 60 HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALN 135 (428)
Q Consensus 60 ~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~ 135 (428)
.+...+..+++...+..++.+|..+...|++++|+.+|.+++.+.|+ ..++.++|.++..+|++++|+..+.+++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 21 LILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555566666667777999999999999999999999999988765 46899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchhhh
Q 014256 136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT 199 (428)
Q Consensus 136 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~~~~~ 199 (428)
.+|.+..++..+|.++..+|+...+...+..++ ..+.+|.+.+.+++..+|.+.
T Consensus 101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~----------~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE----------ALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH----------HHHHHHHHHHHHHHhhCchhH
Confidence 999999999999999999999766665555443 346667777777777776654
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=4.7e-11 Score=119.55 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=106.9
Q ss_pred chHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256 56 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEAL 134 (428)
Q Consensus 56 ~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al 134 (428)
+-.+.|..+-...|...+......+|.+|.-.|+|++|+.||+.||..+|+ ...|+.+|..+..-.+.++|+..|.+|+
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 345677777777774333344669999999999999999999999999999 8999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 135 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 135 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
++.|.++.++|++|.++..+|.|++|+.+|-.||.+.+.
T Consensus 492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999876
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.22 E-value=3.7e-11 Score=115.42 Aligned_cols=136 Identities=17% Similarity=0.146 Sum_probs=92.8
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..++++++...+.++....+.......|..+|.++.+.|++++|+.+|++++.++|+ ..+...++.++...|+++++..
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 667777777777776654422233444667777778888888888888888888877 6677777777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~ 185 (428)
.+.......|+++..+..+|.++..+|++++|+..|++++..+|+++.+...+..+.
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL 258 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 777777777777777777788888888888888888888888887777755554443
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.9e-11 Score=113.26 Aligned_cols=155 Identities=23% Similarity=0.257 Sum_probs=135.4
Q ss_pred hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H-----------
Q 014256 41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A----------- 107 (428)
Q Consensus 41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~----------- 107 (428)
+...-+.++ ..|++++|...-...+++++.+.++ ++.+|.+++-.++.+.|+.+|++++.++|+ .
T Consensus 171 a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~a--l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 171 AKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEA--LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHhcccchhHH--HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 334444556 7899999999999999999998877 779999999999999999999999999997 1
Q ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-----
Q 014256 108 -VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----- 177 (428)
Q Consensus 108 -~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----- 177 (428)
..|..+|.-.++.|+|..|.++|+.+|.+||++ ++.|.++|.++.++|+..+|+.+.+.++.|+|....+
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 356778999999999999999999999999976 5679999999999999999999999999999987665
Q ss_pred -----HHHHHHHHHHHHHHHHhchh
Q 014256 178 -----KKQLAEVKSLYEKEVFQKAS 197 (428)
Q Consensus 178 -----~~~l~~a~~~~~~a~~~~~~ 197 (428)
.+.+++|.+.|++++....+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56788888888888776633
No 54
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-10 Score=109.83 Aligned_cols=128 Identities=32% Similarity=0.469 Sum_probs=108.0
Q ss_pred cCCCCcchHHHHHhhhhc---CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC---Cc--HHHHHHHHHHHHHhc
Q 014256 50 SYSRNYDPVSHISSSLMN---EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS---PT--AVAYANRAMAYLKLR 121 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~---~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~---p~--~~~~~nla~~~~~~~ 121 (428)
..|++..-...++..... +..+..|..++.-||-||+.++|..|+.+|+++|... |+ +.+|+|||.|.+.+|
T Consensus 54 ~~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~ 133 (390)
T KOG0551|consen 54 SEGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG 133 (390)
T ss_pred CCCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH
Confidence 446665556665554433 1223457779999999999999999999999999974 55 789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
+|..|+.+|.+|+.++|++.++++|-|.|+..+.++.+|+++.+..+.++-....+
T Consensus 134 NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 134 NYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999998887655444
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.8e-10 Score=115.10 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=125.5
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..|++.+|..+|.++..++|....+ |...|..|...|..++|+.+|..|-++-|. ...+..+|+-|...++++.|..
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpa--Wl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPA--WLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHH--HHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 7799999999999999999988877 668888888888888888888888888777 4445557777777777777777
Q ss_pred HHHHHHhcCCCCH-----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256 129 DCTEALNLDDRYI-----------------------------------------KAYSRRATARKELGKLKESIEDSEFA 167 (428)
Q Consensus 129 ~~~~al~l~p~~~-----------------------------------------~a~~~lg~~~~~lg~~~eA~~~~~~a 167 (428)
.|.+|+.+.|.++ ..+.++|.++.+++++.+|+..|+++
T Consensus 402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777777653 12678999999999999999999999
Q ss_pred HhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhHh
Q 014256 168 LRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTLE 201 (428)
Q Consensus 168 l~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~~ 201 (428)
|.+.|.+... .++++.|+..|.+++.++|.+...
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 9999998776 688999999999999999988553
No 56
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.8e-10 Score=115.42 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=115.6
Q ss_pred ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC---------
Q 014256 35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--------- 104 (428)
Q Consensus 35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~--------- 104 (428)
++...+|...+|... ..++-..||..++++++++|++.++ +..+|..|...|.-.+|+.++..-|...
T Consensus 315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nlea--LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a 392 (579)
T KOG1125|consen 315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEA--LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSA 392 (579)
T ss_pred ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcccc
Confidence 344445556666665 4455566777777777777777777 5577777777776666666666554332
Q ss_pred --------------------------------C---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256 105 --------------------------------P---TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 149 (428)
Q Consensus 105 --------------------------------p---~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 149 (428)
| ++.++..+|..|...|+|+.|+.+|+.||..+|++...|.++|.
T Consensus 393 ~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 393 GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 2 13455567888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhch
Q 014256 150 ARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA 196 (428)
Q Consensus 150 ~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~ 196 (428)
++..-.+..+|+..|.+|++|.|+...+ .+.+.+|..+|-.++.+.+
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 8888888888888888888888887665 4667777777777776653
No 57
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.19 E-value=1.4e-10 Score=115.20 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=98.8
Q ss_pred cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256 48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA 126 (428)
++..|+|++|+.+|.+++..+|.+..+ +..+|.+|...|+|++|+.++.+++.++|+ +.+|+++|.+|+.+|+|++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a--~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAEL--YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 347789999999999999999998777 779999999999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELG 155 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg 155 (428)
+..|++++.++|++..+...++.|...+.
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998888876663
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.18 E-value=6.3e-10 Score=91.74 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRA 148 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~lg 148 (428)
.++.+|..++..|+|++|+..|.+++..+|+ ..+++.+|.+++..|++++|+..|..++..+|++ +.+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3789999999999999999999999999876 5689999999999999999999999999999885 67899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 149 TARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 149 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
.++..+|++++|...+.+++...|++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 999999999999999999999999987654
No 59
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.18 E-value=9.3e-11 Score=87.67 Aligned_cols=66 Identities=35% Similarity=0.473 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEP 172 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg-~~~eA~~~~~~al~l~P 172 (428)
+..|.++|.+++..|+|++|+..|++++.++|+++.+++++|.++..+| ++.+|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3455566666666666666666666666666666666666666666666 46666666666666655
No 60
>PLN02789 farnesyltranstransferase
Probab=99.18 E-value=2.2e-10 Score=111.62 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=126.4
Q ss_pred cChhhhhcCCCccc-cCC-CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCH--HHHHHHHHHHHccCCc-HHHH
Q 014256 36 SSLKSAKKPSPSGN-SYS-RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKF--KEAIDCYSRSIALSPT-AVAY 110 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g-~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~--~~Ai~~y~~al~~~p~-~~~~ 110 (428)
+++-.+....+.++ ..| ++.+++..+.+++..+|++..+ |..+|.++.+.|++ ++++.++.++++.+|. ..+|
T Consensus 68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa--W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW 145 (320)
T PLN02789 68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI--WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW 145 (320)
T ss_pred chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH--hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH
Confidence 33334443334444 556 5799999999999999998888 88999999988874 7889999999999998 9999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhhCCCcHHHHHHHHH
Q 014256 111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL---GKL----KESIEDSEFALRLEPQNQEIKKQLAE 183 (428)
Q Consensus 111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l---g~~----~eA~~~~~~al~l~P~~~~~~~~l~~ 183 (428)
.++|.++..+|+|++|+++|+++|+.||.|..+|+.+|.+...+ |.+ ++++.+..+++.++|+|..++..+..
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ 225 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG 225 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999998876 334 47888888999999999999877666
Q ss_pred HHH
Q 014256 184 VKS 186 (428)
Q Consensus 184 a~~ 186 (428)
+..
T Consensus 226 ll~ 228 (320)
T PLN02789 226 LFK 228 (320)
T ss_pred HHh
Confidence 543
No 61
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.17 E-value=3.7e-10 Score=102.84 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=103.1
Q ss_pred hcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 014256 87 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR-KELGK--LKESIE 162 (428)
Q Consensus 87 ~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~-~~lg~--~~eA~~ 162 (428)
.++.++++..+.+++..+|+ ...|.++|.+|..+|++++|+..|.+++.++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 67789999999999999999 999999999999999999999999999999999999999999975 77787 599999
Q ss_pred HHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhh
Q 014256 163 DSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK 198 (428)
Q Consensus 163 ~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~ 198 (428)
.++++++++|++..+ .+++++|+..|++++...|..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999887 467889999999999888654
No 62
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=6e-10 Score=86.04 Aligned_cols=97 Identities=40% Similarity=0.591 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg 155 (428)
++.+|..++..|++++|+..+.+++...|. ..++..+|.++...+++++|+..|.+++...|.+..+++.+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 678999999999999999999999999998 7889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 014256 156 KLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 156 ~~~eA~~~~~~al~l~P~ 173 (428)
++++|...+.+++.+.|.
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 999999999999998874
No 63
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.16 E-value=6.4e-10 Score=118.50 Aligned_cols=142 Identities=8% Similarity=0.010 Sum_probs=124.4
Q ss_pred cchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256 55 YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA 133 (428)
Q Consensus 55 ~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~a 133 (428)
.+++..........|++.++ +..+|.+....|.+++|...+..++++.|+ ..++.++|.++.+++++++|+..++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~--~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELF--QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred HhhHHHHHHHHHhccccHHH--HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444444444456665555 789999999999999999999999999999 889999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhh
Q 014256 134 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK 198 (428)
Q Consensus 134 l~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~ 198 (428)
+..+|+++.+++.+|.++..+|+|++|+..|++++..+|++..+ .+..++|...|+++++.....
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999987776 367888999999998776544
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.16 E-value=5.3e-10 Score=122.06 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=135.6
Q ss_pred Cccc-cCCCCcchHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-------------c---
Q 014256 46 PSGN-SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-------------T--- 106 (428)
Q Consensus 46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~--a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-------------~--- 106 (428)
+..| ..|++++|+..|++++..+|.... ......++..+...|++++|+..+.++....| +
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 4445 889999999999999988876521 12255778888999999999999999998876 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI--------- 177 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~--------- 177 (428)
..++..+|.++...|++++|+..+++++...|.++.+++.+|.++...|++++|+..+++++.++|++..+
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999654
Q ss_pred -HHHHHHHHHHHHHHHHhchhhhH
Q 014256 178 -KKQLAEVKSLYEKEVFQKASKTL 200 (428)
Q Consensus 178 -~~~l~~a~~~~~~a~~~~~~~~~ 200 (428)
.+++++|...+++.+...|.++.
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHH
Confidence 56789999999999999998876
No 65
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.14 E-value=1.9e-10 Score=86.02 Aligned_cols=65 Identities=40% Similarity=0.647 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDD 138 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~-~~~eA~~~~~~al~l~p 138 (428)
+..|..+|.+++..|+|++|+.+|.++++++|+ +.+|+++|.||..+| ++++|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455889999999999999999999999999999 999999999999999 79999999999999998
No 66
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=6e-10 Score=105.26 Aligned_cols=104 Identities=25% Similarity=0.378 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256 73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 151 (428)
Q Consensus 73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~ 151 (428)
++.-++.+|..++..|++.+|+..|..+++.+|+ ..+++.||.+|+.+|+-..|+.++++++++.|+...+...+|.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4555889999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 152 KELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 152 ~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
..+|.+++|..+|..+|..+|++..
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~ 141 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGL 141 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcch
Confidence 9999999999999999999996543
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=2.2e-09 Score=98.54 Aligned_cols=156 Identities=17% Similarity=0.115 Sum_probs=133.9
Q ss_pred cchhhhhccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc
Q 014256 28 SSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT 106 (428)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~ 106 (428)
.+......++...+ ..+...+ ..|+-+.+..+..++...+|.+... +..+|...+..|+|..|+..+.++..++|+
T Consensus 56 l~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~l--l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 56 LGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDREL--LAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred HHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHH--HHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence 33444455555555 4455555 7888899999999988888876655 567999999999999999999999999998
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256 107 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185 (428)
Q Consensus 107 -~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~ 185 (428)
..+|..+|.+|.+.|++++|...|.+++++.|..+.+..|+|..+.-.|+++.|...+..+....+.+..+..++.-+.
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888877766554
Q ss_pred H
Q 014256 186 S 186 (428)
Q Consensus 186 ~ 186 (428)
.
T Consensus 213 ~ 213 (257)
T COG5010 213 G 213 (257)
T ss_pred h
Confidence 3
No 68
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.9e-10 Score=103.70 Aligned_cols=99 Identities=39% Similarity=0.599 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256 73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 151 (428)
Q Consensus 73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~ 151 (428)
.+..++.-|+.|+...+|..|+.+|.++|.++|. +.+|.|+|.||+++++|+.+..+|.+|++++|+.+++++.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 3555888999999999999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC
Q 014256 152 KELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 152 ~~lg~~~eA~~~~~~al~l~ 171 (428)
.....|.+|+..+.++..+.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999996654
No 69
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=1.3e-09 Score=101.82 Aligned_cols=105 Identities=21% Similarity=0.203 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH---HHH
Q 014256 73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK---AYS 145 (428)
Q Consensus 73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~---a~~ 145 (428)
.+..++.+|..++..|+|++|+..|++++..+|+ ..+++.+|.+|+.+|++++|+..|+++++.+|+++. +++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445889999999999999999999999999987 357899999999999999999999999999998876 799
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHHH
Q 014256 146 RRATARKEL--------GKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 146 ~lg~~~~~l--------g~~~eA~~~~~~al~l~P~~~~~ 177 (428)
.+|.++... |++++|+..|++++..+|++...
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 999999987 88999999999999999998654
No 70
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.10 E-value=1.4e-10 Score=114.53 Aligned_cols=116 Identities=39% Similarity=0.597 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK 152 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~ 152 (428)
+..++..++.+++.++|+.|+..|.++|+++|+ +.++.+|+.++++.++|..|+.++.+|++++|.+.++|+++|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 334678899999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256 153 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 189 (428)
Q Consensus 153 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 189 (428)
.++.+.+|+.+|+....+.|+++.+...+.++.....
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888766544
No 71
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.10 E-value=3.5e-10 Score=97.26 Aligned_cols=89 Identities=18% Similarity=0.103 Sum_probs=84.1
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
|..|++++|+..|+-+..++|.+... |+++|.++-..|+|.+|+.+|.+++.++|+ +..++|.|.|++.+|+.+.|.
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp~~~~y--~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDAWSFDY--WFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 48999999999999999999987766 889999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 014256 128 DDCTEALNLDDR 139 (428)
Q Consensus 128 ~~~~~al~l~p~ 139 (428)
..|+.++..-..
T Consensus 124 ~aF~~Ai~~~~~ 135 (157)
T PRK15363 124 KALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHhcc
Confidence 999999987633
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.09 E-value=2.3e-09 Score=117.15 Aligned_cols=130 Identities=10% Similarity=0.109 Sum_probs=116.1
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..|++++|+..|.++...+|....+ +..+|.++...|++++|+.+|+++++++|. +.++.++|.++...|++++|+.
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~--~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARG--YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6789999999999998877766555 679999999999999999999999999998 8888999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 182 (428)
.+.+++..+|+++. ++.+|.++...|++++|+..+++++.+.|++..+...+.
T Consensus 105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999988754443
No 73
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.09 E-value=5.4e-10 Score=94.90 Aligned_cols=104 Identities=17% Similarity=0.115 Sum_probs=93.5
Q ss_pred hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256 39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA 116 (428)
Q Consensus 39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~ 116 (428)
..+...++..+ ..|++++|+..|++++..+|.+..+ +..+|.+++..|++++|+.+|.+++..+|. ...++++|.+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRY--WLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34455555556 8899999999999999999987777 779999999999999999999999999998 8999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHH
Q 014256 117 YLKLRRFQEAEDDCTEALNLDDRYIKAY 144 (428)
Q Consensus 117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~ 144 (428)
|...|++++|+..++++++++|++....
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999999999887643
No 74
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.06 E-value=5.6e-09 Score=98.80 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=122.4
Q ss_pred hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCch---HHH----------HHHHHHHHHHhcCHHHHHHHHHH
Q 014256 34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD---ATS----------EKELGNECFKQKKFKEAIDCYSR 99 (428)
Q Consensus 34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~---a~~----------~~~lg~~~~~~g~~~~Ai~~y~~ 99 (428)
.++++..|...-|..+ ++|.+++|+..|..+|..+|.+.. +.. +......++..|++..|+++.+.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 4566666665555555 999999999999999999986432 211 23334456667999999999999
Q ss_pred HHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 100 SIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 100 al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
.+++.|- +.++..|+.||...|+...|+.++..+-++..++...+|..+..++..|+.+.++...+.+|+++|++...
T Consensus 181 llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 181 LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 9999998 88999999999999999999999999999999999999999999999999999999999999999998765
No 75
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.06 E-value=3e-09 Score=111.34 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=118.8
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
|..|++++|...+.+++..+|.+..+ |+.+|.+|.++|+.++|+.++..|-.++|. ...|..++....++|++.+|.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~a--y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIA--YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 47799999999999999999999888 889999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
-+|.+||+.+|.+.+..++++..|.++|++..|...|.+++.+.|
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=6.6e-10 Score=104.42 Aligned_cols=141 Identities=15% Similarity=0.118 Sum_probs=121.7
Q ss_pred cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC--Cc--HHHH
Q 014256 36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--PT--AVAY 110 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~--p~--~~~~ 110 (428)
+..-+++.+++..| ..++++-|..+|+++|...-..++. +.++|.|++-.++|+-++.+|.+++... |+ +++|
T Consensus 321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speL--f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvW 398 (478)
T KOG1129|consen 321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPEL--FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVW 398 (478)
T ss_pred CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHH--HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhh
Confidence 45557888888888 7788888999999999987666666 7799999999999999999999998865 44 7889
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
+|+|.+....|++..|.++|.-|+.-|+++..++.++|..-.+.|+..+|...+..+-.+.|+-.+..
T Consensus 399 YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 399 YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred hccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999888765543
No 77
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=5.6e-09 Score=103.26 Aligned_cols=138 Identities=20% Similarity=0.140 Sum_probs=126.0
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
|..|++++|...++.++...|++... +-..|.+++..++..+|++.+.+++.++|+ ...+.++|.+|++.|++.+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~--~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYY--LELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 37899999999999999999998765 558999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256 128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 188 (428)
Q Consensus 128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~ 188 (428)
..+...+..+|+++..|..+|.+|..+|+-.+|...+.+.+.+......+...+..|.+..
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999887777666666555543
No 78
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7.9e-09 Score=97.15 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=118.5
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc---CHHHH
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEA 126 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~---~~~eA 126 (428)
....+..+.-++..+..+|++.+. |..+|.+|+..|++..|...|.+++++.|+ +..+..+|.+++.+. .-.++
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~eg--W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEG--WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHH
Confidence 344666788889999999998877 889999999999999999999999999998 889999998877764 57789
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 186 (428)
...+++++.+||.++.+.+.+|..++..|+|.+|...++..+...|.+..-....+..+.
T Consensus 213 ~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776655554443
No 79
>PRK15331 chaperone protein SicA; Provisional
Probab=99.02 E-value=5.5e-09 Score=90.27 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 154 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l 154 (428)
..+..|..++..|+|++|...|+-+.-.+|. +..|..+|.|+..+++|++|+..|..|..++++++...+..|.|+..+
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 3788999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 155 GKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 155 g~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
|+...|...|..++. .|.+..++
T Consensus 119 ~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 119 RKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred CCHHHHHHHHHHHHh-CcchHHHH
Confidence 999999999999998 56655544
No 80
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.4e-08 Score=92.66 Aligned_cols=126 Identities=21% Similarity=0.103 Sum_probs=76.9
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..|.+++|+++|+..+..+|.+... ++..--+...+|+--+||+.....++..+. ..+|..++.+|+..|+|+.|.-
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~--~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVI--RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 4566666666666666666655444 344444455556666666666666666655 6666666666666666666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHH
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg---~~~eA~~~~~~al~l~P~~~~~ 177 (428)
++++.+-+.|.++-.+.++|.+++-+| ++.-|..+|.++++++|.+..+
T Consensus 176 ClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 176 CLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 666666666666666666666666555 3445666666666666644443
No 81
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.4e-09 Score=95.29 Aligned_cols=102 Identities=28% Similarity=0.381 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcc--------CCc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-----------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~--------~p~-----------~~~~~nla~~~~~~~~~~eA~~~~~~al~l 136 (428)
.+...||-+|+.|+|.+|..+|..|+.. .|. ..++.|.+.|++..|+|-++++.|+..+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999753 232 357899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 137 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
+|.|.+|||++|.++...=+..+|..+|.++|+++|.-..+
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999986554
No 82
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.00 E-value=6.8e-09 Score=112.68 Aligned_cols=150 Identities=12% Similarity=0.038 Sum_probs=123.1
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
++.|+++.|+..|++++..+|.+..+ ...+..++...|++++|+.++++++.-.|. ......+|.+|..+|+|++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~a--v~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQ--VDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhh--HHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 47899999999999999999987544 227788888889999999999999933233 555566688999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH------H---HHHHHHHHHHHHHHHhchhh
Q 014256 128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI------K---KQLAEVKSLYEKEVFQKASK 198 (428)
Q Consensus 128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~------~---~~l~~a~~~~~~a~~~~~~~ 198 (428)
+.|+++++.+|+++.++..++.++...|++++|+..+++++..+|.+... . ....+|+..|++++..+|.+
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999988899999999999999999999999986553 1 33335888888999988877
Q ss_pred hH
Q 014256 199 TL 200 (428)
Q Consensus 199 ~~ 200 (428)
..
T Consensus 203 ~e 204 (822)
T PRK14574 203 EE 204 (822)
T ss_pred HH
Confidence 65
No 83
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.5e-09 Score=103.80 Aligned_cols=139 Identities=21% Similarity=0.253 Sum_probs=107.7
Q ss_pred hhhhcchhhhhh-hhhcccchhhhhccChhhhhcCCCccc-----cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 014256 11 DWDLSLNEKDKK-MKHKASSKDNLVSSSLKSAKKPSPSGN-----SYSRNYDPVSHISSSLMNEESTPDATSEKELGNEC 84 (428)
Q Consensus 11 ~~e~~~~e~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~y-----~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~ 84 (428)
+|.+...+++.. ...+..|+.+|+.++|..|..+|..+. ..+..+ +.-..+... ...++.+++.|+
T Consensus 196 s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~---ee~~~~~~~-----k~~~~lNlA~c~ 267 (397)
T KOG0543|consen 196 SWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE---EEQKKAEAL-----KLACHLNLAACY 267 (397)
T ss_pred ccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH---HHHHHHHHH-----HHHHhhHHHHHH
Confidence 788887777777 677789999999888888777666652 111111 111111111 123478999999
Q ss_pred HHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 014256 85 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 157 (428)
Q Consensus 85 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~ 157 (428)
.+.++|..|+.+.+++|.++|+ ..++|.+|.+++.+++|+.|+.+|.++++++|.|-.+...+..+......+
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 899999999999999999999999999999999988877777766555444
No 84
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.00 E-value=1.1e-09 Score=85.29 Aligned_cols=80 Identities=29% Similarity=0.363 Sum_probs=62.9
Q ss_pred hcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014256 87 QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED 163 (428)
Q Consensus 87 ~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~ 163 (428)
+|+|+.|+..|+++++.+|. ...++++|.||+++|+|++|+..+++ ...++.+...++.+|.++..+|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57888888888888888873 55677788888888888888888888 777888878888888888888888888888
Q ss_pred HHHH
Q 014256 164 SEFA 167 (428)
Q Consensus 164 ~~~a 167 (428)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
No 85
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.99 E-value=2.4e-09 Score=102.88 Aligned_cols=154 Identities=17% Similarity=0.132 Sum_probs=91.3
Q ss_pred CCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC--Cc-HHHHHHHHHHHHHh
Q 014256 44 PSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKL 120 (428)
Q Consensus 44 ~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~--p~-~~~~~nla~~~~~~ 120 (428)
++...+..+++++|+..+.++....+ .+.. +.....++...|+++++...+.++.... +. +.+|..+|.++.+.
T Consensus 83 ~l~~l~~~~~~~~A~~~~~~~~~~~~-~~~~--l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 83 RLIQLLQDGDPEEALKLAEKAYERDG-DPRY--LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccc-ccch--hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 33333466778888887777766543 2222 4566777888899999998888877644 33 77888899999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHH
Q 014256 121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEK 190 (428)
Q Consensus 121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~ 190 (428)
|++++|+.+++++++++|++..+...++.++...|+++++...+.......|.++.. .++..+|...|++
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 999999999999999999999999999999999999988777777777776555433 5678888888888
Q ss_pred HHHhchhhhH
Q 014256 191 EVFQKASKTL 200 (428)
Q Consensus 191 a~~~~~~~~~ 200 (428)
++..+|.++.
T Consensus 240 ~~~~~p~d~~ 249 (280)
T PF13429_consen 240 ALKLNPDDPL 249 (280)
T ss_dssp HHHHSTT-HH
T ss_pred cccccccccc
Confidence 8888877665
No 86
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.97 E-value=2.9e-09 Score=78.56 Aligned_cols=64 Identities=25% Similarity=0.258 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
.+|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++.++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666666666666666666666666666666666666666666666666666666666553
No 87
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=1.4e-08 Score=99.14 Aligned_cols=149 Identities=17% Similarity=0.123 Sum_probs=129.3
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
|..|++++|.+.|.++|..+....++ ++++|..+..+|+.++|++||-+.-.+--+ +.+.+.+|.+|..+.+..+|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ea--lfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEA--LFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHH--HHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 57899999999999999988766666 889999999999999999999988776555 888899999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHHHHHHHhchh
Q 014256 128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKAS 197 (428)
Q Consensus 128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~a~~~~~~ 197 (428)
+++.++..+-|+++..+..+|..|-+.|+-.+|.+++-...+..|.+.+.. .-.++++.+|+++-.+.|.
T Consensus 579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999888888889887662 3356788888888777766
Q ss_pred hh
Q 014256 198 KT 199 (428)
Q Consensus 198 ~~ 199 (428)
..
T Consensus 659 ~~ 660 (840)
T KOG2003|consen 659 QS 660 (840)
T ss_pred HH
Confidence 54
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.94 E-value=3.5e-09 Score=108.21 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=125.1
Q ss_pred hhcCCCccc-cCCCCcchHHHHHhhhhc--------CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--------
Q 014256 41 AKKPSPSGN-SYSRNYDPVSHISSSLMN--------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-------- 103 (428)
Q Consensus 41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~-------- 103 (428)
....++..| ..|+|+.|+..+..++.+ .|. -+...+.+|..|...++|.+|+..|++++.+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344466667 899999999999999998 332 2333567999999999999999999999986
Q ss_pred CCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Q 014256 104 SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE--- 171 (428)
Q Consensus 104 ~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--- 171 (428)
+|. +.++.|+|.+|.+.|+|++|..+|++|+++. |.-...+.+++.++..++++++|...+.+++++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 233 6789999999999999999999999999774 3345678899999999999999999999999865
Q ss_pred --CCcHHH-------------HHHHHHHHHHHHHHHHhc
Q 014256 172 --PQNQEI-------------KKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 172 --P~~~~~-------------~~~l~~a~~~~~~a~~~~ 195 (428)
+.++.. .+.+.+|..+|++++.+.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 233222 467888888998888766
No 89
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.94 E-value=4.9e-09 Score=77.29 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Q 014256 78 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 141 (428)
Q Consensus 78 ~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~ 141 (428)
+.+|..++..|+|++|+.+|++++..+|+ +.+++.+|.++..+|++++|+..|++++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36899999999999999999999999998 99999999999999999999999999999999875
No 90
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.93 E-value=4.6e-09 Score=110.70 Aligned_cols=140 Identities=21% Similarity=0.184 Sum_probs=122.4
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHH
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~ 129 (428)
.+.++.|+..|.++|..+|.+..| -+.+|.++...|++.+|+..|.+..+.-.+ ..+|.|+|.||+.+|+|..|++.
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yA--ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYA--ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhh--ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998776 669999999999999999999999887664 88999999999999999999999
Q ss_pred HHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 014256 130 CTEALNLDD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 192 (428)
Q Consensus 130 ~~~al~l~p--~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~ 192 (428)
|+.+++..- +++..+..||.+++..|+|.+|...+..++.+.|.++.+.-++..+..-+...+
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 999997653 678999999999999999999999999999999999888666555554444333
No 91
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.92 E-value=2.1e-08 Score=86.63 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=101.7
Q ss_pred cCCCCcchHHHHHhhhhcCCCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEEST-PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~-~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~ 124 (428)
..++...+...+..++...|+. ........+|..++..|+|++|+..|+.++...|+ ..+..++|.+++..|+|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677888888899999999887 34455788999999999999999999999998765 567889999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256 125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 168 (428)
+|+..+.. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999966 34444557788899999999999999999999875
No 92
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.5e-09 Score=101.98 Aligned_cols=131 Identities=14% Similarity=0.147 Sum_probs=115.8
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..+++++|.++|..+++.+|.+.++.+ -+|..||-.++.+-|+.+|++.++..-. +.++.|+|.|.+-.++|+-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 678899999999999999998888744 7888899999999999999999998866 8999999999999999999999
Q ss_pred HHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256 129 DCTEALNLDD---RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182 (428)
Q Consensus 129 ~~~~al~l~p---~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 182 (428)
.|.+|+.... .-..+||++|.+....|++.-|...|+-+|.-+|++.++..++.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 9999997754 34678999999999999999999999999999999998855543
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=1.2e-08 Score=105.48 Aligned_cols=125 Identities=22% Similarity=0.153 Sum_probs=114.5
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..+..++|..++.++-.++|-.... |+..|..+...|++.+|.++|..++.++|+ ......+|.+++..|+-.-|..
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l~~~~--~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPLSASV--YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred hcCCchHHHHHHHHHHhcchhhHHH--HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 6777888888999999998765544 889999999999999999999999999999 8889999999999998888887
Q ss_pred --HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 129 --DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 129 --~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
....++++||.++++|+.+|.++..+|+.++|.+.|..++++++.+|.
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999999999999999999988763
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.91 E-value=9.3e-09 Score=94.44 Aligned_cols=120 Identities=17% Similarity=0.099 Sum_probs=111.8
Q ss_pred CCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC
Q 014256 45 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 122 (428)
Q Consensus 45 ~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~ 122 (428)
+|... ..|++..|+..++++....|++..+ |..+|.+|.+.|+++.|...|.+++++.|+ +.++.|+|+.|+-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~--~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEA--WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhh--hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444 8899999999999999999998888 779999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014256 123 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 166 (428)
Q Consensus 123 ~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 166 (428)
++.|...+..+...-+.+..+..+++.+....|++.+|.....+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999999999999999999999999876544
No 95
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.2e-07 Score=86.65 Aligned_cols=147 Identities=17% Similarity=0.091 Sum_probs=131.1
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..|+.+.|..++++.-..-|+...+ ....|..+...|.|++|+++|+..++-+|. ..++-..-.+...+|+--+|++
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV--~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRV--GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence 6788899999999988877888777 668899999999999999999999999998 6666666667778899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-------------HHHHHHHHHHHHHHHHhc
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-------------KKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~-------------~~~l~~a~~~~~~a~~~~ 195 (428)
....-+...+.+..+|..++.+|...|+|+.|.-.+++++-+.|.++.. ..++.-+..+|.++++++
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998865 456677888999999998
Q ss_pred hhh
Q 014256 196 ASK 198 (428)
Q Consensus 196 ~~~ 198 (428)
|.+
T Consensus 222 ~~~ 224 (289)
T KOG3060|consen 222 PKN 224 (289)
T ss_pred hHh
Confidence 744
No 96
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.89 E-value=3.1e-08 Score=93.95 Aligned_cols=103 Identities=8% Similarity=0.015 Sum_probs=93.8
Q ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 014256 75 TSEKELGNEC-FKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSR 146 (428)
Q Consensus 75 ~~~~~lg~~~-~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~ 146 (428)
..++..|..+ ++.|+|++|+..|+..+..+|+ +.+++.+|.+|+..|+|++|+..|.+++...|++ +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3467888876 6679999999999999999997 5789999999999999999999999999998874 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 147 RATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 147 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
+|.++..+|++++|...|+++++..|+...+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999998764
No 97
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.88 E-value=3.5e-09 Score=82.50 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHH
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~ 129 (428)
.|+|+.|+..|++++...|.+.....++.+|.+|++.|+|++|+..+++ +..++. ....+.+|.|++++|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5889999999999999999643455577899999999999999999999 777776 67777789999999999999999
Q ss_pred HHHH
Q 014256 130 CTEA 133 (428)
Q Consensus 130 ~~~a 133 (428)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=1.6e-08 Score=100.12 Aligned_cols=122 Identities=17% Similarity=0.050 Sum_probs=100.8
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH----ccCCc-HHHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI----ALSPT-AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al----~~~p~-~~~~~nla~~~~~~~~~~ 124 (428)
..|++++|...+++++..+|.+..+ +.. +..++..|++..+...+.+++ ..+|. ...+..+|.++..+|+++
T Consensus 55 ~~g~~~~A~~~~~~~l~~~P~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 55 IAGDLPKALALLEQLLDDYPRDLLA--LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHH--HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 7899999999999999999987755 333 556666555554444444444 34455 567788999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256 125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 174 (428)
+|+..|++++.++|+++.++..+|.++...|++++|+..+.+++...|.+
T Consensus 132 ~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 132 RAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 99999999999999999999999999999999999999999999998753
No 99
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=2.2e-08 Score=94.22 Aligned_cols=133 Identities=18% Similarity=0.140 Sum_probs=115.2
Q ss_pred hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc------HHHHHHH
Q 014256 41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANR 113 (428)
Q Consensus 41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~nl 113 (428)
|+..+|.-| ..|-+|.|...|.........-..| +..+-++|-...+|++||++-.+...+.+. +.+|..+
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A--lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA--LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 445555556 7888899999988887755433445 668889999999999999999999988865 6789999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
|..++...+.+.|...+.+|+..||+++.+-..+|.+....|+|+.|+..++.+++.+|...
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999763
No 100
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.3e-08 Score=94.92 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=122.0
Q ss_pred cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHH--------------------------------HHHHHH
Q 014256 36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATS--------------------------------EKELGN 82 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~--------------------------------~~~lg~ 82 (428)
++....+..++.++ ..|++++|+..|+++..++|.+..++. |+--|.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 44455667777777 899999999999999999998765543 333445
Q ss_pred HHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014256 83 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI 161 (428)
Q Consensus 83 ~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~ 161 (428)
.++..++|..|+.+-.++|..+|. ..++...|..++.+++.++|+-.|..|..+.|.....|-.+-.+|...|++.+|.
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 555566777777777777777776 6677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhCCCcHHHHHH------------HHHHHHHHHHHHHhchhhhH
Q 014256 162 EDSEFALRLEPQNQEIKKQ------------LAEVKSLYEKEVFQKASKTL 200 (428)
Q Consensus 162 ~~~~~al~l~P~~~~~~~~------------l~~a~~~~~~a~~~~~~~~~ 200 (428)
...+.+++.-|.+...... .++|+..+++++.++|....
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 7777777777777665332 35777777777777776543
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=1.4e-08 Score=104.29 Aligned_cols=143 Identities=19% Similarity=0.180 Sum_probs=115.7
Q ss_pred CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHH
Q 014256 52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 130 (428)
Q Consensus 52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~ 130 (428)
||.-.=-.+|+++..+. +...+.+...+|...+..++|.++..+++..++++|- ...|+++|.|.+++++++.|..+|
T Consensus 464 GDv~~d~s~yEkawEls-n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELS-NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hhhccChHHHHHHHHHh-hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 33333344444444443 1122333456666677789999999999999999998 899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhc
Q 014256 131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 131 ~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~ 195 (428)
.+++.++|++..+|.|++.+|..+|+-.+|...+.++++-+-++..+ .+++++|+.+|.+.+.++
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988655443 567888888888777655
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.82 E-value=8e-08 Score=101.58 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=122.0
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHH-----------------------------------HHHHHHHHHHhcCHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATS-----------------------------------EKELGNECFKQKKFKEAI 94 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~-----------------------------------~~~lg~~~~~~g~~~~Ai 94 (428)
+.|+.+.|+..|.+++.++|.+..+.. +..+++-||-.|+|..+.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 677888888888888887776543322 566788888889999999
Q ss_pred HHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 95 DCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 95 ~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~-~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
..+..++...-. +..++.+|.+|..+|+|++|..+|.+++..++++ .-+++.+|..|...|+++.|...|++++.
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 998888876533 6679999999999999999999999999999988 88899999999999999999999999999
Q ss_pred hCCCcHHHHH--------------HHHHHHHHHHHHHHhchhhhH
Q 014256 170 LEPQNQEIKK--------------QLAEVKSLYEKEVFQKASKTL 200 (428)
Q Consensus 170 l~P~~~~~~~--------------~l~~a~~~~~~a~~~~~~~~~ 200 (428)
..|++.+... ..+.|..++.+++...|....
T Consensus 371 ~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 371 QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence 9999887621 335666777777776655544
No 103
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.82 E-value=1.4e-07 Score=78.47 Aligned_cols=107 Identities=25% Similarity=0.114 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRAT 149 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~---~~~a~~~lg~ 149 (428)
++++|.++-..|+.++|+.+|++++..... ..++.++|.++..+|++++|+..+++++...|+ +..+...++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 789999999999999999999999997644 678999999999999999999999999999888 7788888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256 150 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 189 (428)
Q Consensus 150 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 189 (428)
++..+|++++|+..+-.++.-. ...+.+++..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la~~------~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALAET------LPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 9999999999999998887522 125566655553
No 104
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.3e-07 Score=91.72 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=136.3
Q ss_pred hcCCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256 42 KKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 120 (428)
Q Consensus 42 ~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~ 120 (428)
+......|..+++..|+.+-.+++..+|++..+ +...|+.+...|+.++|+-.|+.++.+.|. -..|-.+-.||+..
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~a--lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEA--LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchH--HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 344444567889999999999999999998888 668899999999999999999999999998 77888888888888
Q ss_pred cCHH------------------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014256 121 RRFQ------------------------------------EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 164 (428)
Q Consensus 121 ~~~~------------------------------------eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~ 164 (428)
|++. +|...+++++++.|.+..+...+|..+..-|++..++..+
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 8755 4566677777888999999999999999999999999999
Q ss_pred HHHHhhCCCcHH---------HHHHHHHHHHHHHHHHHhchhhhHhhh
Q 014256 165 EFALRLEPQNQE---------IKKQLAEVKSLYEKEVFQKASKTLEKY 203 (428)
Q Consensus 165 ~~al~l~P~~~~---------~~~~l~~a~~~~~~a~~~~~~~~~~~~ 203 (428)
++.|...|+..- +.++++++...|..++.++|.+.....
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 999999987642 367899999999999999998765433
No 105
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.80 E-value=1.9e-08 Score=102.79 Aligned_cols=136 Identities=22% Similarity=0.217 Sum_probs=114.0
Q ss_pred cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCC------CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC----
Q 014256 36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEE------STPDATSEKELGNECFKQKKFKEAIDCYSRSIALS---- 104 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p------~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~---- 104 (428)
+.+...+..++..| ..+++.+|+..|++++.+-. +...+..+.++|..|.+.|+|++|..++.+++++.
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~ 317 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL 317 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 33444455677778 89999999999999998732 22345568999999999999999999999999873
Q ss_pred ----Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 105 ----PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 105 ----p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
|. +..+.+++..+..++++++|+..+.+++++. +.-++.+.++|.+|...|+|++|...|++++.+.
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 22 5678999999999999999999999998763 2346789999999999999999999999999875
No 106
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.80 E-value=2.7e-08 Score=88.47 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=97.2
Q ss_pred hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256 40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA 116 (428)
Q Consensus 40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~ 116 (428)
.++..+|..| ..|++++|+.+|++++...|+.. .+..+..+|.++...|+|++|+.+|.+++..+|. ...+.++|.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3445566666 88999999999999998876543 2456889999999999999999999999999998 8889999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
|..+|+...+...+..++. .+.+|.+.+++++.++|++.
T Consensus 116 ~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 9999998888777666643 36788889999999998873
No 107
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.79 E-value=7.4e-08 Score=99.90 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=104.4
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHcc--CCc-HHHHHHHHHHHHH
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ--------KKFKEAIDCYSRSIAL--SPT-AVAYANRAMAYLK 119 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~--------g~~~~Ai~~y~~al~~--~p~-~~~~~nla~~~~~ 119 (428)
.++...|+.+|+++++.+|++..+.+ .++.++... ++...+.....+++.+ +|. +.+|..+|..+..
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A--~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~ 432 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQA--EKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV 432 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh
Confidence 34577899999999999999987754 556655443 2355667777776665 454 7889999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
.|++++|...+++|+.++| +..+|..+|.++...|++++|+..|+++++++|.++..
T Consensus 433 ~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 433 KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 9999999999999999999 58899999999999999999999999999999998754
No 108
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.78 E-value=1.1e-07 Score=78.40 Aligned_cols=99 Identities=25% Similarity=0.269 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATA 150 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~----~~a~~~lg~~ 150 (428)
.+-..|..+...|+.+.|++.|.+++.+.|. +.+|+|++.++.-+|+.++|++++++|+++.... ..+|..+|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3556788899999999999999999999998 9999999999999999999999999999997654 4579999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCc
Q 014256 151 RKELGKLKESIEDSEFALRLEPQN 174 (428)
Q Consensus 151 ~~~lg~~~eA~~~~~~al~l~P~~ 174 (428)
|..+|+-+.|..+|+.+-++-...
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCHH
Confidence 999999999999999999886543
No 109
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.78 E-value=1.4e-07 Score=102.48 Aligned_cols=134 Identities=14% Similarity=0.128 Sum_probs=114.5
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..|++++|+.++++++ +|.+.....+..+|..+...|+|++|++.|+++++.+|+ +.++..++..|...+++++|+.
T Consensus 80 ~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 80 WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 6699999999999999 554545545667788999999999999999999999999 8888889999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 186 (428)
.+.+++..+|.+... ..++.++...+++.+|+..+++++.++|++.++...+-.+..
T Consensus 158 ~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 158 QATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ 214 (822)
T ss_pred HHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999996554 555666666888878999999999999999988655554443
No 110
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.77 E-value=2.3e-07 Score=78.58 Aligned_cols=104 Identities=20% Similarity=0.192 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYSR 146 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~---~a~~~ 146 (428)
...++..|...++.|+|.+|++.|+.+....|. ..+...+|.+|++.++|++|+..+++-|+++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 445889999999999999999999999999886 67899999999999999999999999999999875 57999
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHhhCCCcHHH
Q 014256 147 RATARKELGK---------------LKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 147 lg~~~~~lg~---------------~~eA~~~~~~al~l~P~~~~~ 177 (428)
+|.++..+.. ...|..+|+.+++..|++.-+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999876 778888888888888877654
No 111
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.77 E-value=3.9e-08 Score=80.93 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=84.8
Q ss_pred cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~ 124 (428)
..|++++|+..|.+++..+|++.. ...++.+|.+++..|+|++|+.+|.+++..+|+ +.++.++|.++.++|+++
T Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 93 (119)
T TIGR02795 14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE 93 (119)
T ss_pred HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence 789999999999999998886532 334779999999999999999999999999876 568999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHH
Q 014256 125 EAEDDCTEALNLDDRYIKAY 144 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a~ 144 (428)
+|+..+.+++...|++..+.
T Consensus 94 ~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 94 KAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHHHHCcCChhHH
Confidence 99999999999999987643
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.77 E-value=6.3e-08 Score=104.52 Aligned_cols=154 Identities=16% Similarity=0.054 Sum_probs=124.4
Q ss_pred ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H-----
Q 014256 35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A----- 107 (428)
Q Consensus 35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~----- 107 (428)
.+.+..++..+...| ..+++++|+..+..++...|+.... ++.+|.++++.+++.+|... .++...+. .
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 356667777777888 9999999999999999999998877 77899999998887776655 44444333 3
Q ss_pred --------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 108 --------------VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 108 --------------~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
.+++.+|.||-++|++++|...|++++++||+|+.++.++|..|... +.++|+..+.+|+...-+
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999 999999999999987322
Q ss_pred cHHHHHHHHHHHHHHHHHHHhchh
Q 014256 174 NQEIKKQLAEVKSLYEKEVFQKAS 197 (428)
Q Consensus 174 ~~~~~~~l~~a~~~~~~a~~~~~~ 197 (428)
..++..+..++.+.+..+|.
T Consensus 182 ----~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 182 ----KKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred ----hhcchHHHHHHHHHHhcCcc
Confidence 22444555555555544443
No 113
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.74 E-value=3.3e-08 Score=76.05 Aligned_cols=88 Identities=28% Similarity=0.457 Sum_probs=81.4
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..|++++|+..|.+++...|....+ +..+|.++...|++++|+.+|.+++...|. ..++..+|.++...|+++.|..
T Consensus 12 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 12 KLGDYDEALEYYEKALELDPDNADA--YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHhcHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHH
Confidence 6789999999999999999887655 779999999999999999999999999988 7789999999999999999999
Q ss_pred HHHHHHhcCCC
Q 014256 129 DCTEALNLDDR 139 (428)
Q Consensus 129 ~~~~al~l~p~ 139 (428)
.+.+++..+|.
T Consensus 90 ~~~~~~~~~~~ 100 (100)
T cd00189 90 AYEKALELDPN 100 (100)
T ss_pred HHHHHHccCCC
Confidence 99999998874
No 114
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.72 E-value=3.1e-07 Score=96.61 Aligned_cols=123 Identities=17% Similarity=0.189 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK 152 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~ 152 (428)
+..+...||.++..|++++|...+.++|..+|. +.+|+.+|.+|..+|+.+.|....-.|-.++|.+...|.+++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455788999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhch
Q 014256 153 ELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA 196 (428)
Q Consensus 153 ~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~ 196 (428)
.+|++.+|.-.|.+|++.+|.+-+. .+.+..|..-|.+.+...|
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 9999999999999999999998765 3556677777777777776
No 115
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=5.7e-08 Score=94.92 Aligned_cols=130 Identities=18% Similarity=0.108 Sum_probs=114.4
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHH
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~ 129 (428)
-.++.+|-.+-..++.++.-++.+ +-+.|++.|..|++++|.+.|.+++.-+.. ..+.+|+|..+..+|++++|+++
T Consensus 469 gk~~~~aqqyad~aln~dryn~~a--~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~ 546 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNIDRYNAAA--LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDC 546 (840)
T ss_pred ccchhHHHHHHHHHhcccccCHHH--hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHH
Confidence 457888888888999888777777 559999999999999999999999988777 78899999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182 (428)
Q Consensus 130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 182 (428)
|-+.-.+--+++.+++.++.+|..+.+..+|++.+.++..+-|+++.+...+.
T Consensus 547 f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 547 FLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 99888888888999999999999999999999999999999999998855443
No 116
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.2e-07 Score=83.84 Aligned_cols=94 Identities=26% Similarity=0.288 Sum_probs=84.7
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~ 124 (428)
|..|+|.+|..-|..+|...|... .+..+.++|.+++++++++.||..+.++|+++|. ..+.-.||.+|-++.+|+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 467888889999999999988764 3556889999999999999999999999999998 778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCHH
Q 014256 125 EAEDDCTEALNLDDRYIK 142 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~ 142 (428)
+|+.+|.+.+.++|....
T Consensus 186 ealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 186 EALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHHHHHHHhCcchHH
Confidence 999999999999998753
No 117
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.70 E-value=1.7e-07 Score=95.40 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=136.9
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~ 129 (428)
..|+...|...+..++..+|+..+. |...-.+.+...+|+.|...+.++....|...+|+.-+.....+++.++|++.
T Consensus 596 ~agdv~~ar~il~~af~~~pnseei--wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEI--WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHH--HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 6799999999999999999997777 77778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHHHHHHHhchhhh
Q 014256 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASKT 199 (428)
Q Consensus 130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~a~~~~~~~~ 199 (428)
|+++++..|++.+.|..+|.++..+++.+.|...|...++..|+....+ +.+-.|...+.++...+|.+.
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999988763 355567778888888888877
Q ss_pred Hhh
Q 014256 200 LEK 202 (428)
Q Consensus 200 ~~~ 202 (428)
.-+
T Consensus 754 ~lw 756 (913)
T KOG0495|consen 754 LLW 756 (913)
T ss_pred hhH
Confidence 643
No 118
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.68 E-value=9.7e-08 Score=71.94 Aligned_cols=63 Identities=32% Similarity=0.463 Sum_probs=34.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
.+|+..++|++|+..+++++.++|+++.+++.+|.++..+|++.+|+.+|++++++.|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 344555555555555555555555555555555555555555555555555555555554443
No 119
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.68 E-value=3.8e-07 Score=84.95 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT 149 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~lg~ 149 (428)
.|+.+..+++.|+|..|...|..-+...|+ +.+++.+|.+++.+|+|+.|...|..+++-.|++ +.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 789999999999999999999999999998 7899999999999999999999999999998876 577999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 150 ARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 150 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
+..++|+-++|...|+++++..|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999987764
No 120
>PRK11906 transcriptional regulator; Provisional
Probab=98.68 E-value=3.3e-07 Score=91.27 Aligned_cols=121 Identities=12% Similarity=0.006 Sum_probs=108.7
Q ss_pred CCcchHHHHHhhh---hcCCCCchHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256 53 RNYDPVSHISSSL---MNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 119 (428)
Q Consensus 53 ~~~~Ai~~~~~al---~~~p~~~~a~~~~~lg~~~~~~---------g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~ 119 (428)
..+.|..+|.+++ .++|....+ +..++.|++.. .+-.+|.....++++++|. +.+...+|.++..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a--~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTEC--YCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 4567889999999 999998877 44777777664 3466899999999999998 9999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
.++++.|...|++|+.++|+.+.+|+.+|.++...|+.++|...++++++++|.-.
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999999999999999999999999999999999999644
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.68 E-value=9.8e-07 Score=80.72 Aligned_cols=136 Identities=19% Similarity=0.196 Sum_probs=106.1
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhc--
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR-- 121 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~-- 121 (428)
+..|+|.+|+..|++++...|.... ..+.+.+|.++++.|+|..|+..|++.+...|+ +.+++.+|.+++.+.
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence 4789999999999999999886542 344789999999999999999999999999987 678999999987764
Q ss_pred ---------CHHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 122 ---------RFQEAEDDCTEALNLDDRYIKA-----------------YSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 122 ---------~~~eA~~~~~~al~l~p~~~~a-----------------~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
...+|+..|+..+...|+...+ -+..|..|.+.|.|..|+..++.+++-.|+..
T Consensus 96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 3458999999999999986321 23357788889999999999999999999988
Q ss_pred HHHHHHHHH
Q 014256 176 EIKKQLAEV 184 (428)
Q Consensus 176 ~~~~~l~~a 184 (428)
....-+...
T Consensus 176 ~~~~al~~l 184 (203)
T PF13525_consen 176 AAEEALARL 184 (203)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 764433333
No 122
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=2.5e-07 Score=91.58 Aligned_cols=160 Identities=11% Similarity=0.059 Sum_probs=122.3
Q ss_pred cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH
Q 014256 36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN 112 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n 112 (428)
+++..++...+..+ ..|+++.+...+.++....+.... .......|..++..|++++|+..+.+++..+|+ ..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 45555555556555 678889999999998888775532 334667899999999999999999999999998 656554
Q ss_pred HHHHHHHhcCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------H
Q 014256 113 RAMAYLKLRRFQEAEDDCTEAL----NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------K 178 (428)
Q Consensus 113 la~~~~~~~~~~eA~~~~~~al----~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~ 178 (428)
+..+...+++..+.....+++ ..+|....++..+|.++...|++++|...+++++.+.|++..+ .
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 666666555444444444444 5677888888899999999999999999999999999998765 3
Q ss_pred HHHHHHHHHHHHHHHhch
Q 014256 179 KQLAEVKSLYEKEVFQKA 196 (428)
Q Consensus 179 ~~l~~a~~~~~~a~~~~~ 196 (428)
+++++|...+.+++...|
T Consensus 162 g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 162 GRFKEGIAFMESWRDTWD 179 (355)
T ss_pred CCHHHHHHHHHhhhhccC
Confidence 556777777777776654
No 123
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.66 E-value=6.4e-08 Score=102.29 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=128.0
Q ss_pred hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---HHH
Q 014256 34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVA 109 (428)
Q Consensus 34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---~~~ 109 (428)
....+..++.-+|..| ..-+...|..+|.++..+++...++ +...+..|....+++.|......+-+..|. ...
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea--aaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA--AAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh--HHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 5667778888888888 4457888999999999999887776 668888888888899888887777777765 445
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HH
Q 014256 110 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KK 179 (428)
Q Consensus 110 ~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~ 179 (428)
|..+|..|+..+++..|+..|..|++.+|.+..+|..+|.+|-..|+|..|+..|.++..++|.+.-. .+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 77789999999999999999999999999999999999999999999999999999999999987543 45
Q ss_pred HHHHHHHHHHHHH
Q 014256 180 QLAEVKSLYEKEV 192 (428)
Q Consensus 180 ~l~~a~~~~~~a~ 192 (428)
.+.++...+...+
T Consensus 645 kYkeald~l~~ii 657 (1238)
T KOG1127|consen 645 KYKEALDALGLII 657 (1238)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555433
No 124
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=3.7e-07 Score=86.14 Aligned_cols=137 Identities=12% Similarity=0.033 Sum_probs=121.3
Q ss_pred hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH
Q 014256 40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA 114 (428)
Q Consensus 40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla 114 (428)
.|+..+-..| ...+|.+||+.-.+...+.+... -|..+.+++..+....+++.|+..+.++++.+|+ ..+-..+|
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 4566666778 88999999999999998887653 3556788999999999999999999999999999 77888899
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 115 MAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 115 ~~~~~~~~~~eA~~~~~~al~l~p~~-~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
.+++..|+|+.|++.++.+++.||.+ +.+.-.+..||..+|+.++....+.++.+..++...
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 99999999999999999999999998 467888999999999999999999999999887543
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.64 E-value=1.5e-06 Score=81.74 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=105.5
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcC-
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR- 122 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a-~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~- 122 (428)
+..|+|++|+..|++++...|....+ .+.+.+|.++++.++|++|+..|++.+..+|+ +.+++.+|.++..+++
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 47789999999999999999876544 23578999999999999999999999999887 6678999988755541
Q ss_pred -----------------HHHHHHHHHHHHhcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256 123 -----------------FQEAEDDCTEALNLDDRYIK---A--------------YSRRATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 123 -----------------~~eA~~~~~~al~l~p~~~~---a--------------~~~lg~~~~~lg~~~eA~~~~~~al 168 (428)
...|+..|+..++..|+... + -+..|.-|.+.|.|..|+.-++.++
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 35788899999999997632 2 2234666888899999999999999
Q ss_pred hhCCCcHHHHHHHH
Q 014256 169 RLEPQNQEIKKQLA 182 (428)
Q Consensus 169 ~l~P~~~~~~~~l~ 182 (428)
.-.|+.+....-+-
T Consensus 203 ~~Yp~t~~~~eal~ 216 (243)
T PRK10866 203 RDYPDTQATRDALP 216 (243)
T ss_pred HHCCCCchHHHHHH
Confidence 99998776543333
No 126
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.64 E-value=1.8e-07 Score=70.47 Aligned_cols=70 Identities=29% Similarity=0.444 Sum_probs=64.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256 80 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 149 (428)
Q Consensus 80 lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 149 (428)
+..+|+..++|+.|+.++++++.++|+ +..|..+|.|+..+|+|.+|..++++++...|+++.+...++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 357899999999999999999999999 8899999999999999999999999999999999887665543
No 127
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=7.2e-07 Score=85.98 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=119.8
Q ss_pred hhhccChhhhhcCCCcc------------c-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc--CHHHHHHH
Q 014256 32 NLVSSSLKSAKKPSPSG------------N-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDC 96 (428)
Q Consensus 32 ~~~~~~~~~a~~~~~~~------------y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g--~~~~Ai~~ 96 (428)
++..++++.|+..+... | ..++++.|.+.+......+++..-. ....+++.+..| ++.+|.-.
T Consensus 112 ~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~--qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT--QLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp HCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH--HHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH--HHHHHHHHHHhCchhHHHHHHH
Confidence 34667778887666554 3 7899999999999988887653322 334444555555 69999999
Q ss_pred HHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCc
Q 014256 97 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL-KESIEDSEFALRLEPQN 174 (428)
Q Consensus 97 y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~-~eA~~~~~~al~l~P~~ 174 (428)
|++.....+. +...+.+|.|++.+|+|++|...+.+++..+|.++.++.++..+...+|+. +.+.+++.+....+|++
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 9998877655 888999999999999999999999999999999999999999999999998 56677888888899988
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014256 175 QEIKKQLAEVKSLYEKEVF 193 (428)
Q Consensus 175 ~~~~~~l~~a~~~~~~a~~ 193 (428)
+-+. .+.+....|++++.
T Consensus 270 ~~~~-~~~~~~~~FD~~~~ 287 (290)
T PF04733_consen 270 PLVK-DLAEKEAEFDRAVA 287 (290)
T ss_dssp HHHH-HHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHH
Confidence 7654 44555566665543
No 128
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.62 E-value=1.2e-07 Score=70.45 Aligned_cols=59 Identities=25% Similarity=0.194 Sum_probs=29.0
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 119 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 119 ~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
..|+|++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 34445555555555555555555555555555555555555555555555555544433
No 129
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.61 E-value=6.4e-07 Score=79.26 Aligned_cols=96 Identities=19% Similarity=0.155 Sum_probs=81.2
Q ss_pred HHHHhcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCC
Q 014256 83 ECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRATARKELGK 156 (428)
Q Consensus 83 ~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~---~~~a~~~lg~~~~~lg~ 156 (428)
.+|-.+.|..+...+...+...+. ..+|+++|.++..+|+|++|+..|.+++.+.|+ .+.+++++|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence 344556677777777766665554 678999999999999999999999999998765 34689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHH
Q 014256 157 LKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 157 ~~eA~~~~~~al~l~P~~~~~~ 178 (428)
+++|+..+++++.++|.+....
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHH
Confidence 9999999999999999887653
No 130
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.60 E-value=9.4e-07 Score=91.72 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=110.3
Q ss_pred cCCCCchHHHHHHHHHHHHHhcC---HHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc--------CHHHHHHHHHHHH
Q 014256 67 NEESTPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--------RFQEAEDDCTEAL 134 (428)
Q Consensus 67 ~~p~~~~a~~~~~lg~~~~~~g~---~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~--------~~~eA~~~~~~al 134 (428)
..|.+..++.++..|..++..++ +..|+.+|+++++++|+ +.+|..++.+|.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34566678888999999887655 88999999999999999 888888888886653 3445566666666
Q ss_pred hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256 135 NL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL 200 (428)
Q Consensus 135 ~l--~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~ 200 (428)
.+ +|.++.+|.-+|..+...|++++|...+++++.++|+ ..+ .++.++|...|.+++.++|..+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 64 7888899999999999999999999999999999995 443 45788899999999999998775
No 131
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.60 E-value=1.2e-06 Score=88.62 Aligned_cols=145 Identities=6% Similarity=0.006 Sum_probs=85.3
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC------------------------
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP------------------------ 105 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p------------------------ 105 (428)
..|+++.|+..+++....+|++..+ +..++.+|...|+|++|++.+.+..+..+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~a--l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEV--LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777777777777666 55777777777777777755554443211
Q ss_pred ------------------c-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014256 106 ------------------T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 166 (428)
Q Consensus 106 ------------------~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 166 (428)
+ +.++..+|..+...|+.++|.....++++. +.++......+.+ ..|+.++++..+++
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~ 319 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQ 319 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHH
Confidence 1 223444566666666666666666666653 2233222222221 22555555555555
Q ss_pred HHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhh
Q 014256 167 ALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT 199 (428)
Q Consensus 167 al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~ 199 (428)
.++..|+++.. .+++.+|...|++++..+|+..
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 56666666654 2446666666666666666554
No 132
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=1.5e-07 Score=84.18 Aligned_cols=105 Identities=19% Similarity=0.116 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256 72 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 150 (428)
Q Consensus 72 ~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~ 150 (428)
..+..++++|+.|-..|=+.-|.-.|.+++.+.|+ +.+++.+|..+...|+|+.|.+.|+..+++||.+-.++.|+|.+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 35667899999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 151 RKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 151 ~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
++--|+|.-|.+++.+-.+-+|+++-
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChH
Confidence 99999999999999999999999875
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=5.9e-07 Score=97.16 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=107.8
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH----
Q 014256 67 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---- 141 (428)
Q Consensus 67 ~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~---- 141 (428)
.+|.+..+ +..++..+...|++++|+..+..+++..|+ ..+|+..|..+++.+++..|... .++.+.+.+.
T Consensus 26 ~~p~n~~a--~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 26 YSLSKFKE--LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CCcchHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 35666666 779999999999999999999999999999 88999999999999988777655 5555555544
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH---------HHHHHHHHHHHHHHHhch
Q 014256 142 ---------------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK---------KQLAEVKSLYEKEVFQKA 196 (428)
Q Consensus 142 ---------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~---------~~l~~a~~~~~~a~~~~~ 196 (428)
.|++.+|.||..+|++++|...|+++++++|+|+.+. .++++|..++.+++....
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999872 267888999998887653
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=1.6e-06 Score=86.15 Aligned_cols=120 Identities=19% Similarity=0.106 Sum_probs=110.8
Q ss_pred CCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 014256 69 ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 147 (428)
Q Consensus 69 p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~l 147 (428)
|.-..+ +|..+..++..|+++.|+..++..+...|+ +.++-..+.+++..++..+|.+.+++++.++|..+-..+++
T Consensus 303 ~~~~aa--~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAA--QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHH--HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 444445 789999999999999999999999999998 88889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 014256 148 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190 (428)
Q Consensus 148 g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 190 (428)
|.++...|++.+|+..+...+.-+|+++..+..+.+|......
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999888887765553
No 135
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.58 E-value=1e-06 Score=80.53 Aligned_cols=104 Identities=20% Similarity=0.163 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSR 146 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~ 146 (428)
+..++..|..++..|+|.+|+..|++++...|. +.+.+.+|.++++.|+|++|+..+++.+...|++ ..+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 344889999999999999999999999999886 7789999999999999999999999999999987 468999
Q ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHhhCCCcHHH
Q 014256 147 RATARKELG-----------KLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 147 lg~~~~~lg-----------~~~eA~~~~~~al~l~P~~~~~ 177 (428)
+|.++..+. ...+|+..|+..+...|+..-+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 999876653 3458999999999999987544
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.58 E-value=2.5e-06 Score=80.21 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHH
Q 014256 73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYS 145 (428)
Q Consensus 73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~ 145 (428)
.+..++..|..++..|+|++|+..|++++...|. ..+.+++|.+|+++++|++|+..+++.++++|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3444789999999999999999999999999998 4456899999999999999999999999999977 56799
Q ss_pred HHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCcHHH
Q 014256 146 RRATARKELGK------------------LKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 146 ~lg~~~~~lg~------------------~~eA~~~~~~al~l~P~~~~~ 177 (428)
.+|.++..++. ..+|+..|+..++..|+..-+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 99998766651 257889999999999987543
No 137
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=2.1e-07 Score=95.92 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=115.3
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..++|.++..+++..+.++|-.... |+.+|.+..+.++++.|..+|.+++.++|+ ..+|+|++.+|+++++-.+|..
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~--wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGT--WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhH--HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 6799999999999999999987766 999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
.+.+|++.+-.+.+.|-|...+....|.+++|+..+.+.+.+.-
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999887653
No 138
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.57 E-value=2.6e-07 Score=91.88 Aligned_cols=69 Identities=23% Similarity=0.296 Sum_probs=62.0
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256 67 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTEALNLD 137 (428)
Q Consensus 67 ~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~---~~~~nla~~~~~~~~~~eA~~~~~~al~l~ 137 (428)
.+|++..+ ++++|.+|+..|+|++|+.+|+++++++|+ . .+|+|+|.||.++|++++|+.++.+|+++.
T Consensus 70 ~dP~~a~a--~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAED--AVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45665555 889999999999999999999999999998 4 459999999999999999999999999984
No 139
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.57 E-value=2.4e-07 Score=68.70 Aligned_cols=66 Identities=26% Similarity=0.275 Sum_probs=60.2
Q ss_pred HHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256 84 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 149 (428)
Q Consensus 84 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 149 (428)
+++.|+|++|+..|++++..+|+ ..+++.+|.||++.|++++|...+.+++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 46789999999999999999998 9999999999999999999999999999999999887776664
No 140
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.56 E-value=3.8e-07 Score=86.53 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=85.2
Q ss_pred cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~ 124 (428)
..|+|++|+..|+..+...|+... ..+++.+|.+|+..|+|++|+..|.+++..+|+ +.+++.+|.++..+|+++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 568999999999999999998742 334889999999999999999999999998886 789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHH
Q 014256 125 EAEDDCTEALNLDDRYIKA 143 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a 143 (428)
+|...|+++++..|+...+
T Consensus 235 ~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHHCcCCHHH
Confidence 9999999999999998654
No 141
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.55 E-value=7.9e-07 Score=77.76 Aligned_cols=93 Identities=24% Similarity=0.228 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 014256 90 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR----------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-- 156 (428)
Q Consensus 90 ~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~----------~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~-- 156 (428)
|+.|.+.|+.....+|. +..+++.|.+++.+.+ +++|+.-|++||.++|+...+++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 67788888888888887 8888888888777643 6788889999999999999999999999988764
Q ss_pred ---------HHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256 157 ---------LKESIEDSEFALRLEPQNQEIKKQLA 182 (428)
Q Consensus 157 ---------~~eA~~~~~~al~l~P~~~~~~~~l~ 182 (428)
|++|..+|+++..++|++...+..++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 66777777777888887766544433
No 142
>PRK15331 chaperone protein SicA; Provisional
Probab=98.54 E-value=4.1e-07 Score=78.76 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=82.8
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
|..|++++|...|.-+...+|.+.+- |..+|.++-..|+|++|+.+|..+..++++ +..++..|.||+.+|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y--~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDY--TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 48999999999999999999887665 889999999999999999999999999987 888899999999999999999
Q ss_pred HHHHHHHhcCCCCHH
Q 014256 128 DDCTEALNLDDRYIK 142 (428)
Q Consensus 128 ~~~~~al~l~p~~~~ 142 (428)
.+|..++. .|.+..
T Consensus 126 ~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 126 QCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHh-CcchHH
Confidence 99999998 455443
No 143
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.52 E-value=1.2e-06 Score=87.15 Aligned_cols=68 Identities=21% Similarity=0.143 Sum_probs=64.5
Q ss_pred cCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 103 LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA---YSRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 103 ~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a---~~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
.+|+ +.+|+|+|.+|..+|+|++|+..|++++.++|++..+ |+++|.+|..+|++++|+.+|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4777 9999999999999999999999999999999999855 999999999999999999999999998
No 144
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.52 E-value=3.1e-06 Score=85.60 Aligned_cols=150 Identities=8% Similarity=0.042 Sum_probs=122.2
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
+..|+++.|..+|.++.+.+|+...+. ....+..+...|++++|+..+++.++.+|+ +.++..++.+|...|+|++|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~-~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPV-EITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 378999999999999999988765332 224489999999999999999999999999 889999999999999999999
Q ss_pred HHHHHHHhc------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014256 128 DDCTEALNL------------------------------------------DDRYIKAYSRRATARKELGKLKESIEDSE 165 (428)
Q Consensus 128 ~~~~~al~l------------------------------------------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~ 165 (428)
..+.+..+. .|+++.++..+|.++...|+.++|...++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555554422 23466778888999999999999999999
Q ss_pred HHHhhCCCcHHH--------HHHHHHHHHHHHHHHHhchhhhH
Q 014256 166 FALRLEPQNQEI--------KKQLAEVKSLYEKEVFQKASKTL 200 (428)
Q Consensus 166 ~al~l~P~~~~~--------~~~l~~a~~~~~~a~~~~~~~~~ 200 (428)
++++..| ++.. .++..++...+++.+...|.++.
T Consensus 288 ~~l~~~~-~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 288 DGLKRQY-DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred HHHhcCC-CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence 9999555 4442 24556778888888888888775
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.51 E-value=1.3e-06 Score=87.18 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=101.3
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..++++.|+..|++....+|. + ...++.++...++..+|+..+.+++...|. ...+...|..++..++|+.|+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---V--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---H--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 567899999999999988874 3 336788888899999999999999999998 8888899999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 167 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 167 (428)
.+++++.+.|++..+|+.|+.+|..+|+|+.|+..++.+
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999776543
No 146
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.48 E-value=3.6e-06 Score=85.95 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=116.2
Q ss_pred cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHH
Q 014256 36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR 113 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nl 113 (428)
+...+.+...|-.+ ..|+-++|..+....+..++...-. |.-+|.++...++|.+|+.||+.|+.++|+ ...|.-+
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC--wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC--WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh--HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 44445555555555 8899999999999999988876544 889999999999999999999999999998 8899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
+....++++|+.....-.+.++++|.+...|...+.++.-+|+|..|...++......
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988776665544
No 147
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.47 E-value=3.3e-06 Score=86.23 Aligned_cols=126 Identities=11% Similarity=-0.017 Sum_probs=97.7
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
.+++.++|+.+++++|+..|.+... |..+|.++.+.++.+.|.+.|...+...|+ ..+|..++..-.+.|..-.|..
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl--~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKL--WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHH--HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 4677777888888888887777666 667788888888888888888888888887 7777777777777778888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
.++++.-.+|++...|.-.-.+-.+.|+.+.|.....++|+-.|++...
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 8888888888887777777777777888888888888888777776543
No 148
>PRK11906 transcriptional regulator; Provisional
Probab=98.47 E-value=3.6e-06 Score=83.98 Aligned_cols=128 Identities=13% Similarity=0.027 Sum_probs=110.2
Q ss_pred hHH--HHHHHHHHHHHhc---CHHHHHHHHHHHH---ccCCc-HHHHHHHHHHHHHh---------cCHHHHHHHHHHHH
Q 014256 73 DAT--SEKELGNECFKQK---KFKEAIDCYSRSI---ALSPT-AVAYANRAMAYLKL---------RRFQEAEDDCTEAL 134 (428)
Q Consensus 73 ~a~--~~~~lg~~~~~~g---~~~~Ai~~y~~al---~~~p~-~~~~~nla~~~~~~---------~~~~eA~~~~~~al 134 (428)
.++ .++.+|...+..+ ..+.|+.+|.+|+ .++|. +.+|..+|.||+.. ..-.+|.+...+|+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 555 5677787776654 4668999999999 99999 88999999998876 13567899999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256 135 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL 200 (428)
Q Consensus 135 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~ 200 (428)
++||.|+.++..+|.++...|+++.|...|++++.++|+...+ .++.++|...+++++.++|....
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 9999999999999999999999999999999999999999887 35678889999999999987654
No 149
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.45 E-value=1.7e-06 Score=88.32 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=122.9
Q ss_pred cCCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256 43 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR 121 (428)
Q Consensus 43 ~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~ 121 (428)
.++-.+|..++|...++..+.+|...|.+.+. +-..|..+...|+-++|..+...++..++. .+.|.-+|..+..-+
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges--lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKFPEHGES--LAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCccchh--HHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 44556677889999999999999999998887 448899999999999999999999999988 889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
+|++|+.+|..|+.++|+|...+..++....++|+|+.....-.+.+++.|+.-..
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~ 145 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS 145 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999987654
No 150
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.45 E-value=9.5e-06 Score=82.37 Aligned_cols=126 Identities=9% Similarity=-0.013 Sum_probs=111.5
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcH--HHHHHHHHHHHHhcCHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~--~~~~nla~~~~~~~~~~eA 126 (428)
+..|++..|.+.+.++.+..|..... +...|..+...|+++.|..+|.++.+..|+. .+...++..++..|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~--~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLN--LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 37899999999999999988765444 5678999999999999999999999988883 3556679999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
...++..++..|+++.++..++.++...|++++|...+.+.++....++.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999999987544433
No 151
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.44 E-value=3.4e-06 Score=85.65 Aligned_cols=135 Identities=9% Similarity=0.010 Sum_probs=101.2
Q ss_pred HHHHHhhhhcCCCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHH--HHHHHHHHHHhcCHHHHHHHHHH
Q 014256 58 VSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA--YANRAMAYLKLRRFQEAEDDCTE 132 (428)
Q Consensus 58 i~~~~~al~~~p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~--~~nla~~~~~~~~~~eA~~~~~~ 132 (428)
...+..+....|.. .....+..+|..+...|++++|+..++++++..|+ ... ..-+....+..++.+.++..+++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 34455555555521 12233668899999999999999999999999988 321 23344445556889999999999
Q ss_pred HHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCcHHH---------HHHHHHHHHHHHHHH
Q 014256 133 ALNLDDRYI--KAYSRRATARKELGKLKESIEDSE--FALRLEPQNQEI---------KKQLAEVKSLYEKEV 192 (428)
Q Consensus 133 al~l~p~~~--~a~~~lg~~~~~lg~~~eA~~~~~--~al~l~P~~~~~---------~~~l~~a~~~~~~a~ 192 (428)
+++.+|+++ ..+..+|.++.+.|+|++|..+|+ .++...|++... .++.++|..+|++++
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999 888899999999999999999999 688888977654 234455566666554
No 152
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.9e-06 Score=78.45 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=102.0
Q ss_pred hhhhhcchhhhhh-hhhcccchhhhhccChhhhhcCCCccccCCCCcchHHHHHhhhh-cCCCCchHH--------HHHH
Q 014256 10 LDWDLSLNEKDKK-MKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLM-NEESTPDAT--------SEKE 79 (428)
Q Consensus 10 ~~~e~~~~e~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~y~~g~~~~Ai~~~~~al~-~~p~~~~a~--------~~~~ 79 (428)
..|.|+.++++++ --+..+|+.+|+.+.|.+|...| .+|+.++..+.- ..|..++.. .+.+
T Consensus 165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~Y---------reAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllN 235 (329)
T KOG0545|consen 165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKY---------REAIICLRNLQLKEKPGEPEWLELDKMITPLLLN 235 (329)
T ss_pred ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHH---------HHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHh
Confidence 3999999999998 55567888888888777765433 345555555432 344443321 2678
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 014256 80 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 146 (428)
Q Consensus 80 lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~ 146 (428)
...|+...|+|-++++.....+..+|. ..+|+.+|.++...-+..+|..++..+++++|.-..+..+
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 899999999999999999999999998 8899999999999999999999999999999987665443
No 153
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.39 E-value=5.5e-07 Score=68.78 Aligned_cols=59 Identities=22% Similarity=0.381 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC---C-c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALS---P-T----AVAYANRAMAYLKLRRFQEAEDDCTEALN 135 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~---p-~----~~~~~nla~~~~~~~~~~eA~~~~~~al~ 135 (428)
+.++|.+|...|+|++|+.+|++++.+. + + +.++.++|.+|..+|++++|+..+++++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555555555431 1 1 33444455555555555555555544443
No 154
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.39 E-value=3.4e-06 Score=87.62 Aligned_cols=123 Identities=22% Similarity=0.196 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg 155 (428)
|...|..+.+.+.-++|..|..++-.++|. +..|+.+|.++...|.+++|.+.|..|+.+||+++.+..-+|.++...|
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 667888888999999999999999999998 8899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHH--HHHHHHhhCCCcHHHHHHHHH----------HHHHHHHHHHhchhhh
Q 014256 156 KLKESIE--DSEFALRLEPQNQEIKKQLAE----------VKSLYEKEVFQKASKT 199 (428)
Q Consensus 156 ~~~eA~~--~~~~al~l~P~~~~~~~~l~~----------a~~~~~~a~~~~~~~~ 199 (428)
+-.-|.. .+..+++++|.+.++|..+.+ |...|.-++.+.++.+
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8887777 999999999999999765554 4445555555554433
No 155
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.39 E-value=1.7e-07 Score=89.16 Aligned_cols=97 Identities=31% Similarity=0.521 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg 155 (428)
.+..+.-.+..|.++.|++.|..+|.++|. +..|..+|.+++++++...|+.+|..|+.++|+....|-.+|.++..+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 455677788899999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 014256 156 KLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 156 ~~~eA~~~~~~al~l~P~ 173 (428)
+|.+|..++..+.+++-+
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999998753
No 156
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=3.8e-06 Score=84.98 Aligned_cols=125 Identities=15% Similarity=0.116 Sum_probs=103.6
Q ss_pred hcCCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHH
Q 014256 42 KKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAY 117 (428)
Q Consensus 42 ~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~ 117 (428)
+..+......++|++|.....+++...|+...+ ++..-.++.+.++|++|+.. ++.++. ....+..|.|+
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a--~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDA--IRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhh--HhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHH
Confidence 334444447799999999999999999998877 67888899999999999844 444442 34447899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
+++++.++|+.+++ .+++.+..+...+|.+++++|+|++|+..|+..++-+-++.
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 99999999999999 67888888999999999999999999999999977665443
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.34 E-value=9e-07 Score=85.21 Aligned_cols=136 Identities=18% Similarity=0.139 Sum_probs=102.4
Q ss_pred cChhhhh---cCCCccc-cCCCCcchHHHHHhhhhcCC----CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC---
Q 014256 36 SSLKSAK---KPSPSGN-SYSRNYDPVSHISSSLMNEE----STPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--- 104 (428)
Q Consensus 36 ~~~~~a~---~~~~~~y-~~g~~~~Ai~~~~~al~~~p----~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~--- 104 (428)
++++.|. ...++.| ..|++++|...|.++..... ....+..+...|.+|.+ +++.+|+.+|++++.+.
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhc
Confidence 4777666 5555567 78999999999999966532 22334445666666654 59999999999999873
Q ss_pred --Cc--HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 105 --PT--AVAYANRAMAYLKL-RRFQEAEDDCTEALNLDDR--Y----IKAYSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 105 --p~--~~~~~nla~~~~~~-~~~~eA~~~~~~al~l~p~--~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
+. +.++.++|.+|... |++++|++.|.+|+.+... . ..++...|.++..+|+|++|+..|+++....-
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 22 67889999999999 9999999999999987431 1 45678899999999999999999999987653
No 158
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.34 E-value=1.3e-06 Score=66.72 Aligned_cols=65 Identities=31% Similarity=0.383 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD----D---RYIKAYSRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~----p---~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
+.++.++|.+|..+|+|++|+..|++++.+. + ..+.+++++|.++..+|++++|+..+++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3578999999999999999999999999762 1 236789999999999999999999999999863
No 159
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.28 E-value=1.1e-06 Score=85.42 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=97.6
Q ss_pred cCCCccc-cCCCCcchHHHHHhhhhcC----CCCchHHHHHHHHHHHHHhcC--------------------HHHHHHHH
Q 014256 43 KPSPSGN-SYSRNYDPVSHISSSLMNE----ESTPDATSEKELGNECFKQKK--------------------FKEAIDCY 97 (428)
Q Consensus 43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~----p~~~~a~~~~~lg~~~~~~g~--------------------~~~Ai~~y 97 (428)
..+|+.+ ..|.|++|+.+..+-|.+. ....++.+++++|++|...|+ ++.|+++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 3455556 6789999998888877653 334456678999999988774 56677777
Q ss_pred HHHHccCCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 014256 98 SRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDS 164 (428)
Q Consensus 98 ~~al~~~p~-------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~ 164 (428)
..-+++... ..+|-|+|..|+.+|+|+.|+..-+.-+.+...+ ..++.++|.++.-+|+++.|+++|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 777766432 3578889999999999999998888777765433 457888999999999999999999
Q ss_pred HHHHhhC
Q 014256 165 EFALRLE 171 (428)
Q Consensus 165 ~~al~l~ 171 (428)
+..+.+.
T Consensus 259 K~tl~LA 265 (639)
T KOG1130|consen 259 KLTLNLA 265 (639)
T ss_pred HHHHHHH
Confidence 8877553
No 160
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.26 E-value=6.3e-06 Score=69.90 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=84.0
Q ss_pred ccccCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhc
Q 014256 47 SGNSYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR 121 (428)
Q Consensus 47 ~~y~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~ 121 (428)
.++..|+|.+|++.|+.+....|.... ..+...+|.+|++.|+|++|+..|.+-|+++|. .-+++.+|++++.+.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345779999999999999998876532 234679999999999999999999999999997 568999999999998
Q ss_pred C---------------HHHHHHHHHHHHhcCCCCHHH
Q 014256 122 R---------------FQEAEDDCTEALNLDDRYIKA 143 (428)
Q Consensus 122 ~---------------~~eA~~~~~~al~l~p~~~~a 143 (428)
. ...|..+|.+.+...|+...+
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 7 899999999999999987644
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=2.4e-05 Score=67.40 Aligned_cols=90 Identities=18% Similarity=0.056 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT 149 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~lg~ 149 (428)
.+......+..+++..+...+...+.-+|+ ..+...+|.+++..|+|++|...|..++...|+. ..+.+++|.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 445555555789999999999999998887 4568889999999999999999999999987655 468999999
Q ss_pred HHHHcCCHHHHHHHHHH
Q 014256 150 ARKELGKLKESIEDSEF 166 (428)
Q Consensus 150 ~~~~lg~~~eA~~~~~~ 166 (428)
++...|+|++|+..+..
T Consensus 94 ~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 99999999999999966
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.5e-05 Score=75.31 Aligned_cols=110 Identities=18% Similarity=0.122 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 014256 89 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK---LKESIEDS 164 (428)
Q Consensus 89 ~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~---~~eA~~~~ 164 (428)
+.+..+.-++.-+..+|+ ..-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.++..... -.++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 356667777888889998 99999999999999999999999999999999999999999998887653 35899999
Q ss_pred HHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhh
Q 014256 165 EFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK 198 (428)
Q Consensus 165 ~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~ 198 (428)
++++.++|.+..+ .+++.+|...++.-+...|.+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999887 356777777777766665443
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.21 E-value=4e-06 Score=80.75 Aligned_cols=134 Identities=15% Similarity=0.142 Sum_probs=103.5
Q ss_pred cCCCccccCCCCcchHHHHHhhhhcCC----CCchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHccCC---c----HHHH
Q 014256 43 KPSPSGNSYSRNYDPVSHISSSLMNEE----STPDATSEKELGNECFKQ-KKFKEAIDCYSRSIALSP---T----AVAY 110 (428)
Q Consensus 43 ~~~~~~y~~g~~~~Ai~~~~~al~~~p----~~~~a~~~~~lg~~~~~~-g~~~~Ai~~y~~al~~~p---~----~~~~ 110 (428)
...+.+|..+++++|+.+|++++.+.- ....+..+..+|.+|... |++++|+++|.+|+.+.. . ...+
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~ 158 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL 158 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence 344445655699999999999988632 123456688999999999 999999999999998742 1 5678
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 111 ANRAMAYLKLRRFQEAEDDCTEALNLDDR------YI-KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~------~~-~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
.+.|.++..+|+|++|+..|++.....-. .+ ..++..+.|+...|++..|...+++....+|....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 89999999999999999999998865321 12 34677889999999999999999999999996544
No 164
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.20 E-value=8.9e-06 Score=67.26 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=84.9
Q ss_pred cCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHHHHHH
Q 014256 43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMA 116 (428)
Q Consensus 43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~ 116 (428)
..-|.++ ..|+.+.|++.|.+++...|....+ +++++..+.-+|+.++|++.+++++++.-. -.+|..+|..
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSa--yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASA--YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHh--hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3334444 6799999999999999999998887 889999999999999999999999998643 4579999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCH
Q 014256 117 YLKLRRFQEAEDDCTEALNLDDRYI 141 (428)
Q Consensus 117 ~~~~~~~~eA~~~~~~al~l~p~~~ 141 (428)
|..+|+-+.|..+|+.|.++.....
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCHHH
Confidence 9999999999999999988876653
No 165
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=1.8e-05 Score=74.21 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=112.3
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
+..+|.+||+++..-.+.+|.+..+ +-.+|.||+...+|..|.+||++.-.+.|. .......|..+++.+.|..|+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAg--LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAG--LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4568899999999999999887767 559999999999999999999999999998 6666777888888888888766
Q ss_pred HHHHHH----------h--------------------cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 129 DCTEAL----------N--------------------LDD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 129 ~~~~al----------~--------------------l~p--~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
...... + .-| +.+....+.|.+.++.|+|++|++-|+.+++...-++-
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 443322 1 123 44667888999999999999999999999999876654
Q ss_pred H----------HHHHHHHHHHHHHHHHhc
Q 014256 177 I----------KKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 177 ~----------~~~l~~a~~~~~~a~~~~ 195 (428)
+ .+++..|..+..+.+...
T Consensus 180 lAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 4 345555555555444433
No 166
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=2.6e-05 Score=72.76 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=87.2
Q ss_pred cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~ 124 (428)
..|+|.+|...|...+...|+.. ...+++-+|.+++.+|+|.+|...|..++.-.|. +..++.+|.|...+|+-+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 78999999999999999999753 2344778999999999999999999999998886 789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHH
Q 014256 125 EAEDDCTEALNLDDRYIKAYS 145 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a~~ 145 (428)
+|...+.++++..|+...+..
T Consensus 233 ~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 233 EACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999877644
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.11 E-value=1.1e-05 Score=85.84 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=110.6
Q ss_pred Cccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCH
Q 014256 46 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 123 (428)
Q Consensus 46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~ 123 (428)
..-| ...+++.|......+-+..|.......|..+|..|.+.+++..|+..|+.++..+|. ...|..+|.+|...|+|
T Consensus 533 adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 533 ADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred HHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce
Confidence 3334 566777777776665555655555555778999999999999999999999999998 88999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 124 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 124 ~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
.-|+..|++|..++|.+..+.|..+.....+|+|.+|+..+...+.....
T Consensus 613 ~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 613 SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876543
No 168
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=1.7e-05 Score=71.22 Aligned_cols=97 Identities=21% Similarity=0.154 Sum_probs=89.3
Q ss_pred CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256 44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR 121 (428)
Q Consensus 44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~ 121 (428)
.-|..| ..|-+.-|.-.|.+++.+.|..+.+ ++.+|.-+...|+|+.|.+.|+..++++|. .-+..|||..++--|
T Consensus 70 ERGvlYDSlGL~~LAR~DftQaLai~P~m~~v--fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 70 ERGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred HhcchhhhhhHHHHHhhhhhhhhhcCCCcHHH--HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence 345556 7888889999999999999998888 889999999999999999999999999999 778999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHH
Q 014256 122 RFQEAEDDCTEALNLDDRYIK 142 (428)
Q Consensus 122 ~~~eA~~~~~~al~l~p~~~~ 142 (428)
+|.-|.+++.+--+-||++|-
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred chHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999974
No 169
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=9.5e-05 Score=70.90 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=39.3
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-p~~~~~~nla~~~~~~~~~~eA~~ 128 (428)
...+|..|+..++-.+..+.... ...-.-+|.|++..|+|++|+..|+-+.+.+ +....+.|+|.|++-+|.|.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 34455555555555544432221 1111234555566666666666665555533 225555555555555555555544
Q ss_pred HH
Q 014256 129 DC 130 (428)
Q Consensus 129 ~~ 130 (428)
..
T Consensus 113 ~~ 114 (557)
T KOG3785|consen 113 IA 114 (557)
T ss_pred HH
Confidence 33
No 170
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.06 E-value=2.6e-05 Score=68.35 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=69.4
Q ss_pred CcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC
Q 014256 54 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQK----------KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 122 (428)
Q Consensus 54 ~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g----------~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~ 122 (428)
++.|.+.++.....+|.+.++ +.+.|.++.... -+++|+.-|++||.++|+ ..++.++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~Dadn--L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADN--LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH--HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHH--HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 466888999999999998766 678888777653 367899999999999999 8999999999998774
Q ss_pred -----------HHHHHHHHHHHHhcCCCCHH
Q 014256 123 -----------FQEAEDDCTEALNLDDRYIK 142 (428)
Q Consensus 123 -----------~~eA~~~~~~al~l~p~~~~ 142 (428)
|++|..+|.+|...+|++..
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 88999999999999999854
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.03 E-value=1.2e-05 Score=78.29 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=103.6
Q ss_pred hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCC----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC----Cc---H
Q 014256 40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALS----PT---A 107 (428)
Q Consensus 40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~----~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~----p~---~ 107 (428)
.++..+|+-| -+|+|++|+..-+.-|.+...+ .+-.++-++||++.-.|+|+.|+++|.+.+.+. .. +
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566667666 8999999998877777664332 223346799999999999999999999876653 22 6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
...+.+|..|.-+++|+.|+.++.+-+.+.- ....+++.+|.++..+|..+.|+.+.+..+++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6678899999999999999999988666542 346789999999999999999998888877653
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.00 E-value=6.2e-05 Score=62.58 Aligned_cols=86 Identities=21% Similarity=0.172 Sum_probs=74.3
Q ss_pred cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~ 124 (428)
..|+.++|+.+|++++....... ....+..+|..+...|++++|+..+++++...|+ ..+...+++++..+|+++
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHH
Confidence 78999999999999999764432 2445779999999999999999999999998776 456778999999999999
Q ss_pred HHHHHHHHHHh
Q 014256 125 EAEDDCTEALN 135 (428)
Q Consensus 125 eA~~~~~~al~ 135 (428)
+|+..+-.++.
T Consensus 93 eAl~~~l~~la 103 (120)
T PF12688_consen 93 EALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988774
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.99 E-value=0.0003 Score=61.98 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=97.4
Q ss_pred CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc-CCc-HHHHHHHHHHHHHhcCHHHHHHHH
Q 014256 53 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT-AVAYANRAMAYLKLRRFQEAEDDC 130 (428)
Q Consensus 53 ~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~-~p~-~~~~~nla~~~~~~~~~~eA~~~~ 130 (428)
|++.......+.+...|... ..+.+|+.+...|+|.+|...|.+++.- ..+ +..+..++.+.+..+++.+|...+
T Consensus 71 dP~R~~Rea~~~~~~ApTvq---nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ---NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH---HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 44445555555555555433 3668999999999999999999999873 333 778889999999999999999999
Q ss_pred HHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 131 TEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 131 ~~al~l~p~--~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
+...+.+|. .+.....+|.++..+|++..|...|+.++...|+..
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 999999884 466788889999999999999999999999998743
No 174
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.92 E-value=0.00028 Score=73.24 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK 152 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~ 152 (428)
.+.++.++..|-..|++++|+++.+++|+..|. +.+|...|.++-+.|++.+|...++.|..+|..+-..-...+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 356788999999999999999999999999999 9999999999999999999999999999999999988888999999
Q ss_pred HcCCHHHHHHHHHHHHhhC
Q 014256 153 ELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 153 ~lg~~~eA~~~~~~al~l~ 171 (428)
+.|+.++|...+..-.+-+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999887776655
No 175
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.91 E-value=1.7e-05 Score=50.10 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 014256 108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139 (428)
Q Consensus 108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~ 139 (428)
.+|+++|.+|..+|+|++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 176
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4e-05 Score=69.77 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=79.1
Q ss_pred cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256 48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA 126 (428)
+|.-..|+.|+.+|.+++.++|....- +-+.+.++++..+|+.+.....++++++|+ ...++.+|.+.+....|++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y--~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASY--YTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchh--hhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 346677899999999999999987655 779999999999999999999999999999 88999999999999999999
Q ss_pred HHHHHHHHhc
Q 014256 127 EDDCTEALNL 136 (428)
Q Consensus 127 ~~~~~~al~l 136 (428)
+..+.+|..+
T Consensus 98 I~~Lqra~sl 107 (284)
T KOG4642|consen 98 IKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 177
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.90 E-value=0.00027 Score=68.15 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=94.5
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc--CHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--RFQEA 126 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~--~~~eA 126 (428)
..|++++|+..+.+. ...+. ......+|.+.++++.|...+...-+.+.+ ..+...-|.+.+..| .+.+|
T Consensus 114 ~~~~~~~AL~~l~~~-----~~lE~--~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-----GSLEL--LALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CCCHHHHHHCCCTTT-----TCHHH--HHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HcCCHHHHHHHHHcc-----CcccH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 567777777766554 22333 446778999999999999999999888877 334444455555555 69999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 181 (428)
...|+......+..+..+..+|.++..+|+|++|...+.+++..+|++++..-++
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 9999998888888899999999999999999999999999999999998875444
No 178
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.89 E-value=0.00021 Score=80.25 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=62.0
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHhcCHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~nla~~~~~~~~~~eA~ 127 (428)
+.|++++|...|.+...... .+....|..+...|.+.|++++|+..|.+.... .|+...|..+..+|.+.|++++|.
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55556666666655554321 112233555555555666666666655555443 244555555555555555565555
Q ss_pred HHHHHHHh----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 128 DDCTEALN----LDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 128 ~~~~~al~----l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
+.+.+... +.|+ ...|..+-.+|.+.|++++|...|+...+.
T Consensus 563 ~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 563 DVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 55555543 2232 334444555555555555555555555544
No 179
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.88 E-value=0.00031 Score=78.88 Aligned_cols=118 Identities=12% Similarity=-0.013 Sum_probs=59.1
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHhcCHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~nla~~~~~~~~~~eA~ 127 (428)
+.|++++|.+.|+.....+.. +....|..+...|.+.|++++|+..|.+.... .|+...|..+..+|.+.|++++|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 445555555555555444311 11122445555555555555555555555443 244445555555555555555555
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256 128 DDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 128 ~~~~~al~l~-p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 168 (428)
+.+....+.. +.+...|..+..+|.+.|++++|...|+...
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555555443 2234455555555555555555555555543
No 180
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00048 Score=63.92 Aligned_cols=139 Identities=22% Similarity=0.239 Sum_probs=102.6
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHc-cCCcHHHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIA-LSPTAVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~-~~p~~~~~~nla~~~~~~~~~~ 124 (428)
+..+.+-|...+.+...++.+ ..+.+++..+.+ .+++.+|.-+|++.-+ ..|.+...+..|.|++.+|+|+
T Consensus 149 k~~r~d~A~~~lk~mq~ided----~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDED----ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHccchH----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 455556666666666665532 124566666665 3578899999999888 4566888899999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHH
Q 014256 125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL-RLEPQNQEIKKQLAEVKSLYEKEVF 193 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al-~l~P~~~~~~~~l~~a~~~~~~a~~ 193 (428)
+|...+..++..+++++.++.|+-.+-..+|+-.++...+-.-+ ..+|+++- ..++.+...-|++...
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~-vk~~~ekeaeFDrl~~ 293 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF-VKHLNEKEAEFDRLVL 293 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877766555444 45565554 4456666666665543
No 181
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.88 E-value=2.8e-05 Score=52.46 Aligned_cols=42 Identities=33% Similarity=0.283 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256 108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 149 (428)
Q Consensus 108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 149 (428)
.++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456677777777777777777777777777777777777664
No 182
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.87 E-value=1.4e-05 Score=79.45 Aligned_cols=105 Identities=19% Similarity=0.108 Sum_probs=94.3
Q ss_pred ccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHH
Q 014256 47 SGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 125 (428)
Q Consensus 47 ~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~e 125 (428)
..+..++++.|+..|.+++.++|+.... +-+++.++++.++|..|+..+.++|+++|. ..+|+.+|.+.+.+++|.+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~--~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIY--FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceee--echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 3446788999999999999999987766 558999999999999999999999999999 8899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256 126 AEDDCTEALNLDDRYIKAYSRRATARKE 153 (428)
Q Consensus 126 A~~~~~~al~l~p~~~~a~~~lg~~~~~ 153 (428)
|..++.....+.|+++.+.-.+..|-..
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 9999999999999999887666665543
No 183
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.84 E-value=1.6e-05 Score=50.45 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014256 130 CTEALNLDDRYIKAYSRRATARKELGKLKESI 161 (428)
Q Consensus 130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~ 161 (428)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67788888888888888888888888887775
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.84 E-value=0.00059 Score=60.32 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=90.2
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHH-HHHHhcCHHHHHHHHHHHHccCC---c-HHHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGN-ECFKQKKFKEAIDCYSRSIALSP---T-AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~-~~~~~g~~~~Ai~~y~~al~~~p---~-~~~~~nla~~~~~~~~~~ 124 (428)
..+++..++..+..++...+....... ..+. ++...|+++.|+.+|.+++..+| . ...+..++..+...++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (291)
T COG0457 107 ALGKYEEALELLEKALALDPDPDLAEA--LLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184 (291)
T ss_pred HHhhHHHHHHHHHHHHcCCCCcchHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHH
Confidence 556677788888888776665533322 3344 77788888888888888877666 2 555666666677778888
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 125 EAEDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 125 eA~~~~~~al~l~p~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
.|+..+.+++...+. ....+..++.++...+.+..|...+..++...|.
T Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 888888888888887 6778888888888888888888888888888776
No 185
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.80 E-value=0.00028 Score=76.71 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=106.4
Q ss_pred hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc---CCcHHHHHHHHHHH
Q 014256 42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SPTAVAYANRAMAY 117 (428)
Q Consensus 42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~---~p~~~~~~nla~~~ 117 (428)
+..+..+| ..|+.++|++.|++.+...- .+....+..+...|.+.|.+++|..+|....+. .|+...|..+..+|
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGV-APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 34455566 77888999999988776432 223444677778888888888888888888653 35566788888888
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHH
Q 014256 118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSL 187 (428)
Q Consensus 118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~ 187 (428)
.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.++|++... .+++++|.+.
T Consensus 473 ~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 473 GREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 8888888888887654 2333 35567778888888888888888888888888875422 3556677776
Q ss_pred HHHHH
Q 014256 188 YEKEV 192 (428)
Q Consensus 188 ~~~a~ 192 (428)
++...
T Consensus 551 ~~~m~ 555 (697)
T PLN03081 551 VETLK 555 (697)
T ss_pred HHHHH
Confidence 66543
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.79 E-value=0.00026 Score=62.32 Aligned_cols=123 Identities=16% Similarity=0.119 Sum_probs=102.4
Q ss_pred CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHH
Q 014256 44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLK 119 (428)
Q Consensus 44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~ 119 (428)
++++++ ..|++.+|...|++++.---. -+...+..+++..+..+++..|...++...+.+|. +..+..+|.++-.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence 345555 889999999999999875321 23334778999999999999999999999999987 7778888999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256 120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 168 (428)
+|++.+|+..|+.++...|. +.+....+..+..+|+..+|..-+..+.
T Consensus 173 ~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 173 QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999999999999887 5667778899999998888876665554
No 187
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.77 E-value=0.0017 Score=60.30 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=104.4
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhc--
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR-- 121 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a-~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~-- 121 (428)
+..|++.+|+..|+.+....|..+.+ .+...++.++++.++|++|+....+-+.+.|. .-+++.+|.+++..=
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 47789999999999998888765422 23668899999999999999999999998876 456788888877643
Q ss_pred ------CHHHHHHHHHHHHhcCCCCHH---H------------H--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 122 ------RFQEAEDDCTEALNLDDRYIK---A------------Y--SRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 122 ------~~~eA~~~~~~al~l~p~~~~---a------------~--~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
.-.+|...+...+...|+... + . ...|..|.+.|.|-.|+.-++.+++-.|+.....
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 256788888888988886521 1 1 1236677788899999999999998888776665
Q ss_pred HHHHHHHHHHH
Q 014256 179 KQLAEVKSLYE 189 (428)
Q Consensus 179 ~~l~~a~~~~~ 189 (428)
.-+....+.|.
T Consensus 205 eaL~~l~eaY~ 215 (254)
T COG4105 205 EALARLEEAYY 215 (254)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 188
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0005 Score=70.05 Aligned_cols=47 Identities=9% Similarity=0.194 Sum_probs=26.4
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI 101 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al 101 (428)
+.+..++|+..+.- .++..... +-..|.++++.|+|++|+..|+..+
T Consensus 91 rlnk~Dealk~~~~---~~~~~~~l--l~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG---LDRLDDKL--LELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred HcccHHHHHHHHhc---ccccchHH--HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56666666666662 22222222 4456666666677777766666553
No 189
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.76 E-value=6.3e-05 Score=47.47 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256 141 IKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174 (428)
Q Consensus 141 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 174 (428)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999975
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.00013 Score=73.29 Aligned_cols=102 Identities=29% Similarity=0.250 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALNLDDRYIKAYSRRATAR 151 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~---~~~eA~~~~~~al~l~p~~~~a~~~lg~~~ 151 (428)
.++..|+-.+..+.+..|+..|.+++...|. ..+|.|+|.++++.+ +--.|+.+|..|++++|...+++++++.++
T Consensus 376 ~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 376 KFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARAL 455 (758)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence 3677888888888999999999999999999 788999999999864 677899999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 152 KELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 152 ~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
..++++.+|++....+....|.+...
T Consensus 456 ~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 456 NELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 99999999999988888888865543
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.73 E-value=0.0021 Score=59.77 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYSR 146 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~---~a~~~ 146 (428)
+..|++.|...++.|+|.+|+..|+.....+|. ..+...++.++++.++|++|+...++-+++.|.++ .+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 455899999999999999999999999999886 67899999999999999999999999999999775 56888
Q ss_pred HHHHHHHcC--------CHHHHHHHHHHHHhhCCCcHH
Q 014256 147 RATARKELG--------KLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 147 lg~~~~~lg--------~~~eA~~~~~~al~l~P~~~~ 176 (428)
+|.++...= -..+|+..|..++.-.|+..-
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 888876542 235899999999999998743
No 192
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.72 E-value=0.00027 Score=76.83 Aligned_cols=143 Identities=9% Similarity=0.008 Sum_probs=112.3
Q ss_pred Cccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHhcC
Q 014256 46 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRR 122 (428)
Q Consensus 46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~nla~~~~~~~~ 122 (428)
...| +.|++++|...|++.... ....|..+...|.+.|++++|+..|.+.... .|+..+|..+..++.+.|+
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~~-----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPEK-----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 3445 789999999999886432 2344889999999999999999999998764 4778889999999999999
Q ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--H-----HHHHHHHHHHHHHHHH
Q 014256 123 FQEAEDDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE--I-----KKQLAEVKSLYEKEVF 193 (428)
Q Consensus 123 ~~eA~~~~~~al~l~-p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~--~-----~~~l~~a~~~~~~a~~ 193 (428)
+++|.+.+...++.. +.+..++..+..+|.+.|++++|...|++..+.+...-. + .+..++|.++|++...
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999998876 567778888999999999999999999887542221111 1 3456777777776543
No 193
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.71 E-value=0.00033 Score=72.65 Aligned_cols=129 Identities=12% Similarity=-0.009 Sum_probs=105.8
Q ss_pred hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHH-HHHHHH
Q 014256 41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYAN-RAMAYL 118 (428)
Q Consensus 41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~n-la~~~~ 118 (428)
++-.+++.| ..|++++|+.+.++++...|...+. +...|.++-..|++.+|.++++.|..+|+.....++ .+..++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el--y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL--YMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 334556667 8999999999999999999998776 779999999999999999999999999987554444 467788
Q ss_pred HhcCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 119 KLRRFQEAEDDCTEALNLDDRY---------IKAYSRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 119 ~~~~~~eA~~~~~~al~l~p~~---------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
+.|+.++|+..+..-.+-+.+. .......|.+|.+.|++..|+..|..+.+..
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8899999999998877665211 1223445899999999999999999998764
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00053 Score=63.49 Aligned_cols=126 Identities=21% Similarity=0.193 Sum_probs=108.6
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc----cCCc---HHHHHHHHHHHHHhcC
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA----LSPT---AVAYANRAMAYLKLRR 122 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~----~~p~---~~~~~nla~~~~~~~~ 122 (428)
..|+|.-....+.++++.+|....+ ....+|...++.||.+.|..+|++.-+ ++.- .....|.+.+|+..++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~-L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn 267 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQ-LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN 267 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence 7889999999999999988543322 356899999999999999999995433 3322 5567888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 123 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 123 ~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
|..|...+++++..||.++.+..+.|.|+..+|+...|+..++.++.+.|...-
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 999999999999999999999999999999999999999999999999997543
No 195
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.0011 Score=65.90 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=127.7
Q ss_pred cCCCCcchHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~ 127 (428)
...+.+.+.+.|+.+|.+-|+. .-+..|...+....++.+...|...+..||...|...++-..-..-+++++++.+.
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 5788999999999999999874 34555888999999999999999999999999999777777777888999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HHH-----------HHHHHHHHHHHHHHHHhc
Q 014256 128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN-QEI-----------KKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-~~~-----------~~~l~~a~~~~~~a~~~~ 195 (428)
..|++-|...|.+..+|...|..-..+|+.+.|...|+-|+....-+ +++ .++++.|..+|++.+...
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998764322 222 578889999999888766
Q ss_pred h
Q 014256 196 A 196 (428)
Q Consensus 196 ~ 196 (428)
+
T Consensus 538 ~ 538 (677)
T KOG1915|consen 538 Q 538 (677)
T ss_pred c
Confidence 3
No 196
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.67 E-value=0.0015 Score=57.66 Aligned_cols=124 Identities=27% Similarity=0.342 Sum_probs=110.8
Q ss_pred cCCCCcchHHHHHhhhhcCCC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~-~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA 126 (428)
..|+++.|+..|.+++...|. ..........+..+...+++..|+..+.+++...+. ...+.+++.++...+++..|
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence 889999999999999887663 334444667777788999999999999999999887 67899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
...+..++...|.....+..++..+...|.+.++...+.+++...|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999998888888998888888899999999999999997
No 197
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.66 E-value=0.00011 Score=46.21 Aligned_cols=29 Identities=38% Similarity=0.456 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 144 YSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 144 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
++.+|.++..+|++++|+..|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444444
No 198
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.63 E-value=0.00014 Score=45.62 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 140 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~ 140 (428)
+.+|+.+|.+|+.+|+|++|+.+|.+++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4679999999999999999999999999999986
No 199
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00035 Score=66.59 Aligned_cols=93 Identities=26% Similarity=0.321 Sum_probs=81.9
Q ss_pred ccCCCCcchHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 125 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~e 125 (428)
|+.++|..|+..|.+.|+..-.+ ..+..|.+++-+.+-.|+|..|+....+++.++|. ..+|+.-|.|++.+.++.+
T Consensus 92 fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~ 171 (390)
T KOG0551|consen 92 FKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAE 171 (390)
T ss_pred HHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHH
Confidence 37788999999999999875443 34667889999999999999999999999999999 8899999999999999999
Q ss_pred HHHHHHHHHhcCCCCH
Q 014256 126 AEDDCTEALNLDDRYI 141 (428)
Q Consensus 126 A~~~~~~al~l~p~~~ 141 (428)
|..+|+..+.++...-
T Consensus 172 a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 172 AVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHhhhhhhhHHHH
Confidence 9999999988776543
No 200
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.60 E-value=5.5e-05 Score=47.98 Aligned_cols=32 Identities=44% Similarity=0.740 Sum_probs=24.5
Q ss_pred HHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 96 CYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 96 ~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
+|+++|+++|+ +.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46777777877 777888888888888877775
No 201
>PLN03077 Protein ECB2; Provisional
Probab=97.57 E-value=0.00058 Score=76.02 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=108.0
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHhcCHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~nla~~~~~~~~~~eA~ 127 (428)
+.|++++|...|+.. . . ....|..+...|.+.|+.++|+..|++..+. .|+...|..+-.++.+.|.+++|.
T Consensus 536 k~G~~~~A~~~f~~~---~-~--d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 536 RCGRMNYAWNQFNSH---E-K--DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HcCCHHHHHHHHHhc---C-C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 778999999998886 2 2 2344889999999999999999999988774 477777777777888999999999
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------HHHHHHHHHHHHHHHHhch
Q 014256 128 DDCTEALNLDD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVKSLYEKEVFQKA 196 (428)
Q Consensus 128 ~~~~~al~l~p--~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~---------~~~l~~a~~~~~~a~~~~~ 196 (428)
..|+......+ -+...|..+..++.+.|++++|...+++. .+.|+.... .++.+.+....++.++++|
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 99999884433 23567888999999999999999998875 356653321 2334445555566666776
Q ss_pred hhh
Q 014256 197 SKT 199 (428)
Q Consensus 197 ~~~ 199 (428)
.+.
T Consensus 689 ~~~ 691 (857)
T PLN03077 689 NSV 691 (857)
T ss_pred CCc
Confidence 654
No 202
>PLN03077 Protein ECB2; Provisional
Probab=97.55 E-value=0.00074 Score=75.18 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=106.1
Q ss_pred hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc---cCCcHHHHHHHHHHH
Q 014256 42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA---LSPTAVAYANRAMAY 117 (428)
Q Consensus 42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~---~~p~~~~~~nla~~~ 117 (428)
+..+..+| ..|+.++|+..|++...... .+....+..+-..|.+.|.+++|..+|..... +.|+...|..+..++
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 34455566 88999999999999876431 11223355666789999999999999999874 357788899999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
.+.|++++|.+.+++. .+.|+ +..|..+-.++...|+.+.+....+++++++|++...
T Consensus 636 ~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 636 GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 9999999999999875 35555 5566667677888999999999999999999998655
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.52 E-value=0.00023 Score=47.88 Aligned_cols=42 Identities=31% Similarity=0.349 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 014256 142 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183 (428)
Q Consensus 142 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 183 (428)
.+++.+|.+|..+|++++|+..|+++++.+|+++.++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999998876653
No 204
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.51 E-value=0.0021 Score=64.42 Aligned_cols=104 Identities=22% Similarity=0.119 Sum_probs=92.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 014256 81 GNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES 160 (428)
Q Consensus 81 g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA 160 (428)
-..+-..++++.|++.+++..+.+|+. ...++.+++..++..+|++.+.+++...|.+...+...+..+...|+++.|
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 344455689999999999999999873 344788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256 161 IEDSEFALRLEPQNQEIKKQLAEVKS 186 (428)
Q Consensus 161 ~~~~~~al~l~P~~~~~~~~l~~a~~ 186 (428)
+...++++.+.|++...+..+.++-.
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 99999999999999999887776643
No 205
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0014 Score=59.83 Aligned_cols=139 Identities=10% Similarity=0.036 Sum_probs=104.1
Q ss_pred hhhhcCCCccccCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHh-cCHHHHHHHHHHHHccCCc-------
Q 014256 39 KSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQ-KKFKEAIDCYSRSIALSPT------- 106 (428)
Q Consensus 39 ~~a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~-g~~~~Ai~~y~~al~~~p~------- 106 (428)
...+...+++|+.+++.+|+.++++++.+..+.. .+..+..+|..|... .++++||.+|+.+-+....
T Consensus 74 at~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 74 ATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 3444556677888899999999999998864432 234466788888876 8999999999999886543
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~-------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
...+...|..-..+++|.+|+..|++.....-++. .-++.-|.|+...++.-.+...+++...++|.....
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 23444456666678899999999999876654442 235566788888888888999999999999986654
No 206
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0014 Score=63.21 Aligned_cols=85 Identities=21% Similarity=0.177 Sum_probs=73.2
Q ss_pred HHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 014256 83 ECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES 160 (428)
Q Consensus 83 ~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA 160 (428)
.+....+|..|+..++-.+..+.. ...-..+|.|++++|+|++|...|+.+..-+.-+.+.+.++|.|++-+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 345678999999999988877755 455666899999999999999999999998888899999999999999999999
Q ss_pred HHHHHHH
Q 014256 161 IEDSEFA 167 (428)
Q Consensus 161 ~~~~~~a 167 (428)
.....++
T Consensus 111 ~~~~~ka 117 (557)
T KOG3785|consen 111 KSIAEKA 117 (557)
T ss_pred HHHHhhC
Confidence 8865554
No 207
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.44 E-value=0.0018 Score=72.46 Aligned_cols=123 Identities=12% Similarity=0.032 Sum_probs=98.9
Q ss_pred cCCCCcchHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK 119 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~ 119 (428)
..|++++|...+++++...+... .+..+..+|.++...|++++|...+.+++..... ..++.++|.+++.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999999999988544322 2334678899999999999999999999876321 3467889999999
Q ss_pred hcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 120 LRRFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 120 ~~~~~eA~~~~~~al~l~p~--------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
.|++++|...+.+++.+... ....+..+|.++...|++++|...+.+++.+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 99999999999999876321 233466789999999999999999999987643
No 208
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00028 Score=66.42 Aligned_cols=134 Identities=9% Similarity=-0.054 Sum_probs=106.8
Q ss_pred hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc----------
Q 014256 34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA---------- 102 (428)
Q Consensus 34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~---------- 102 (428)
..+....++..+|.|| ...++..|..+|++.-...|....- ..-.+..+++.+.|.+|+........
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY--rlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lq 116 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY--RLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQ 116 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH--HHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455556778888888 8899999999999998888875443 34567777777877777765432221
Q ss_pred --------------------cCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 014256 103 --------------------LSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 159 (428)
Q Consensus 103 --------------------~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e 159 (428)
.-|. +....|.|...++.|+|++|++-|..|++...-++-.-|+++.+++..|+|..
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyas 196 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYAS 196 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHH
Confidence 1232 56778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 014256 160 SIEDSEFALR 169 (428)
Q Consensus 160 A~~~~~~al~ 169 (428)
|+.+....+.
T Consensus 197 ALk~iSEIie 206 (459)
T KOG4340|consen 197 ALKHISEIIE 206 (459)
T ss_pred HHHHHHHHHH
Confidence 9988776654
No 209
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.42 E-value=0.00029 Score=71.55 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 154 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l 154 (428)
++..|......|+...|+.|+..|+...|. .+...++|.++++-+-.-.|-..+.+++.+....+-.++.+|.++..+
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 444455555689999999999999999997 566899999999999999999999999999988899999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256 155 GKLKESIEDSEFALRLEPQNQEIKKQLAEV 184 (428)
Q Consensus 155 g~~~eA~~~~~~al~l~P~~~~~~~~l~~a 184 (428)
.+.+.|++.|+.++.++|++++..+.+..+
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999999987766543
No 210
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.37 E-value=5.9e-05 Score=72.10 Aligned_cols=90 Identities=21% Similarity=0.141 Sum_probs=82.0
Q ss_pred cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256 48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA 126 (428)
+|..|+++.|++.|..++.++|..... +..+|.++.+.++...|+..|..++.++|+ +.-|-.+|.++..+|+|++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l--~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAIL--YAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhh--cccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 356788999999999999999986655 669999999999999999999999999999 77888899999999999999
Q ss_pred HHHHHHHHhcCCC
Q 014256 127 EDDCTEALNLDDR 139 (428)
Q Consensus 127 ~~~~~~al~l~p~ 139 (428)
..++..+++++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999988754
No 211
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.36 E-value=0.00093 Score=64.50 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=106.7
Q ss_pred hcCCCccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----------
Q 014256 42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---------- 106 (428)
Q Consensus 42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---------- 106 (428)
...+++++ .++.++++++.|+++++...++. +...+..+|..|-...||++|+-+..++.++...
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34466666 78889999999999998754433 2334678999999999999999999999886422
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 107 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLD------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 107 -~~~~~nla~~~~~~~~~~eA~~~~~~al~l~------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
....+.++.++..+|+.-.|.++|+++.++. +.+.....-+|.+|...|+.+.|..-|+.+......
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 3456778999999999999999999998774 345667778899999999999999999999877643
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.28 E-value=0.0027 Score=65.53 Aligned_cols=104 Identities=14% Similarity=0.036 Sum_probs=83.1
Q ss_pred CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHHhcCHHHH
Q 014256 52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~~~~~~~~~eA 126 (428)
...+.|.+.+.......|+..-. ++..|..+...|+.++|+++|++++..... ...++.+|.|++.+++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lf--l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALF--LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 34566888888888888875443 778999999999999999999999864433 45688999999999999999
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCH
Q 014256 127 EDDCTEALNLDD-RYIKAYSRRATARKELGKL 157 (428)
Q Consensus 127 ~~~~~~al~l~p-~~~~a~~~lg~~~~~lg~~ 157 (428)
...+.+..+.+. ...-..|..|.|+..+|+.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 999999988654 3344456678888888886
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.28 E-value=0.0075 Score=51.68 Aligned_cols=90 Identities=24% Similarity=0.156 Sum_probs=67.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCc-----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256 80 LGNECFKQKKFKEAIDCYSRSIALSPT-----------------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136 (428)
Q Consensus 80 lg~~~~~~g~~~~Ai~~y~~al~~~p~-----------------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l 136 (428)
.|......|+...++..+.+++.+... ..+...++..+...|++++|+..|.+++.+
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 355555666777777777777766321 123344677888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 137 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
+|.+-.+|..+-.++...|+..+|+..|+++.+
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988754
No 214
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0035 Score=57.25 Aligned_cols=140 Identities=16% Similarity=0.087 Sum_probs=94.2
Q ss_pred Chhhhh---cCCCccc-cCCCCcchHHHHHhhhhc----CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--
Q 014256 37 SLKSAK---KPSPSGN-SYSRNYDPVSHISSSLMN----EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-- 106 (428)
Q Consensus 37 ~~~~a~---~~~~~~y-~~g~~~~Ai~~~~~al~~----~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-- 106 (428)
.+++|. .+-++.| -.+++..|=..|.++-.. +..+..+..+...+++| +.++..+|+.|++++|++..+
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhh
Confidence 444443 3334445 344555555555555332 22233344445555554 556999999999999998754
Q ss_pred -----HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256 107 -----AVAYANRAMAYLKL-RRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174 (428)
Q Consensus 107 -----~~~~~nla~~~~~~-~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 174 (428)
+..+..+|..|..- .+++.|+..|+++-...... -+++...+..-..+|+|.+|+..|+++.+-.-++
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34566788888775 89999999999998765422 3456666777778999999999999999877776
Q ss_pred HHH
Q 014256 175 QEI 177 (428)
Q Consensus 175 ~~~ 177 (428)
.-.
T Consensus 188 ~LL 190 (288)
T KOG1586|consen 188 NLL 190 (288)
T ss_pred hHH
Confidence 654
No 215
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00049 Score=66.22 Aligned_cols=110 Identities=28% Similarity=0.363 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC---c-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSP---T-----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p---~-----------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l 136 (428)
.++.|+..++.++|..|..-|.+++..-. . ...+.|.+.|-++.+.+..|+..+..+++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 56788899999999999999998875321 0 245678899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186 (428)
Q Consensus 137 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 186 (428)
+++..+++++++.++..+.++++|+++++.+....|++..+...+..+..
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999988766665544
No 216
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0071 Score=58.05 Aligned_cols=116 Identities=14% Similarity=0.030 Sum_probs=100.7
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc-CCc-HH---HHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT-AV---AYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~-~p~-~~---~~~nla~~~~~~~~~~ 124 (428)
..|+..+|....+++|...|.+.-+ ++.--.+++-.|+...-...+.+.+-. +++ +. +.-.++.++...|-|+
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla--~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLA--VKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhh--hhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 6789999999999999999987666 667777888899999999999999887 666 33 2345678899999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256 125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 167 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 167 (428)
+|++..++++++++.+.-+.+..+.++...|++.++.+...+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999999999999999999999999877653
No 217
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.03 E-value=0.006 Score=65.12 Aligned_cols=126 Identities=13% Similarity=-0.014 Sum_probs=104.8
Q ss_pred cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256 48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA 126 (428)
....+++..|.....+.++..|+...+.+ ..|..+++.|++++|..|++..-...++ ....-.+-.||..++++++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~v--LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKV--LKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34678899999999999999999888855 6788999999999999888777666666 66677788999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
...|++++..+|+ -...+.+=.+|.+-+.|.+-.+.--+..+.-|+++-
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 9999999999999 777777888899988887666655555566676654
No 218
>PRK10941 hypothetical protein; Provisional
Probab=97.03 E-value=0.0072 Score=57.49 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
.....|+=.+|...++++.|+.+.+..+.++|+++.-+--+|.+|.++|.+..|..+++..++..|+++.+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 345678889999999999999999999999999999999999999999999999999999999999998763
No 219
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.01 E-value=0.0011 Score=41.56 Aligned_cols=30 Identities=37% Similarity=0.497 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 143 AYSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 143 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
+|+.+|.++..+|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444
No 220
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.99 E-value=0.0014 Score=41.09 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 014256 108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 140 (428)
Q Consensus 108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~ 140 (428)
.+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999854
No 221
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.95 E-value=0.0062 Score=42.68 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 014256 142 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183 (428)
Q Consensus 142 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 183 (428)
..+|.+|.++.++|+|++|..+.+.+|+++|+|.++......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 356788888899999999999999999999988887654433
No 222
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.012 Score=54.81 Aligned_cols=127 Identities=16% Similarity=0.082 Sum_probs=93.1
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHh----cCHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL----RRFQE 125 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~----~~~~e 125 (428)
..|++++|.........+ ++.+ .-.+++.+..+++-|.....+..+++.+ .....+|.++.+. +.+.+
T Consensus 120 ~~~~~deAl~~~~~~~~l-----E~~A--l~VqI~lk~~r~d~A~~~lk~mq~ided-~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGENL-----EAAA--LNVQILLKMHRFDLAEKELKKMQQIDED-ATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred cCCChHHHHHHHhccchH-----HHHH--HHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhccchhhhh
Confidence 678888888877774332 3433 4467788888888888888888887765 1222334333332 35888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256 126 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184 (428)
Q Consensus 126 A~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a 184 (428)
|.-.|+..-..-|..+......+.|+..+|+|++|...++.+|.-++++++...++--+
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 88888888887777788888899999999999999999999999999998876554433
No 223
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.95 E-value=0.012 Score=65.92 Aligned_cols=145 Identities=14% Similarity=0.005 Sum_probs=108.4
Q ss_pred cCCCCcchHHHHHhhhhcCCC-------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc------HHHHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEES-------TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMA 116 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~-------~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~nla~~ 116 (428)
..|++++|...+..+....+. .........+|.+++..|++++|..++.+++...+. ..++..+|.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 678999999999887654221 113334556889999999999999999999985543 2456789999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----H---H------
Q 014256 117 YLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQN-----Q---E------ 176 (428)
Q Consensus 117 ~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-----~---~------ 176 (428)
+...|++++|...+.+++...... ..++.++|.++...|++++|...+.+++.+.... . .
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999998764321 3467788999999999999999999998863211 1 1
Q ss_pred ----HHHHHHHHHHHHHHHHHh
Q 014256 177 ----IKKQLAEVKSLYEKEVFQ 194 (428)
Q Consensus 177 ----~~~~l~~a~~~~~~a~~~ 194 (428)
..+++++|...+.+++..
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHh
Confidence 035566777777666543
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.91 E-value=0.021 Score=54.94 Aligned_cols=99 Identities=10% Similarity=-0.037 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK-LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 154 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~-~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l 154 (428)
|-.+.+...+.+..+.|...|.+|+...+. ..+|...|..-++ .++.+.|...|+.+++..|.+...|......+..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 445556666666677777777777644333 5566666666555 34555577777777777777777766666666677
Q ss_pred CCHHHHHHHHHHHHhhCCCcH
Q 014256 155 GKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 155 g~~~eA~~~~~~al~l~P~~~ 175 (428)
|+.+.|...|++++..-|...
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEK 104 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHH
T ss_pred CcHHHHHHHHHHHHHhcCchh
Confidence 777777777777776665544
No 225
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.90 E-value=0.041 Score=45.05 Aligned_cols=91 Identities=24% Similarity=0.319 Sum_probs=69.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHccC---Cc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------cCCC
Q 014256 80 LGNECFKQKKFKEAIDCYSRSIALS---PT----------AVAYANRAMAYLKLRRFQEAEDDCTEALN-------LDDR 139 (428)
Q Consensus 80 lg~~~~~~g~~~~Ai~~y~~al~~~---p~----------~~~~~nla~~~~~~~~~~eA~~~~~~al~-------l~p~ 139 (428)
.|.-.+..|-|++|...|.+++... |. +.++..++.++..+|+|++++.....++. ++.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 3455566789999999999999864 21 35678889999999999999998888884 3444
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 140 Y----IKAYSRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 140 ~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
. +.+.+++|.++..+|+.++|+..|+.+-+.
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3 456788999999999999999999887653
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.014 Score=54.35 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHH----HhcCC--CCHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEA----LNLDD--RYIKAYSRRA 148 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~a----l~l~p--~~~~a~~~lg 148 (428)
.+.+.+++...|+|.-.+..|.+.++.+|. +.....+|.+.++.|+.+.|...|+.. -.++. .+..+..+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 456778888899999999999999999966 888999999999999999999999944 33443 2345667778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHHHHHHHhchhh
Q 014256 149 TARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASK 198 (428)
Q Consensus 149 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~a~~~~~~~ 198 (428)
.++...++|.+|...|.+++..+|.++.+. +.+..|++.+..++.+.|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 888888999999999999999999998874 44445555555555444443
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.025 Score=53.69 Aligned_cols=137 Identities=15% Similarity=0.073 Sum_probs=95.7
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHH--HHHHHhcCHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRA--MAYLKLRRFQEAE 127 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla--~~~~~~~~~~eA~ 127 (428)
..|++.+|...|..++...|.+..+ ...++.+|...|+++.|...+...-.-..........+ ..+.+.....+ .
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~--~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~-~ 222 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEA--KLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE-I 222 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchH--HHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC-H
Confidence 6788888999999999988888777 55888899999998888777665322222211111112 22222222221 3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHH
Q 014256 128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ--NQEIKKQLAEVKSLYE 189 (428)
Q Consensus 128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~--~~~~~~~l~~a~~~~~ 189 (428)
..+.+.+..||++..+-+.+|..+...|++++|.+.+-..++.+-+ +..++..+-+...++.
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4567777889999999999999999999999999999999988754 4556666665555443
No 228
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.83 E-value=0.021 Score=54.89 Aligned_cols=125 Identities=13% Similarity=0.063 Sum_probs=100.2
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK-QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~-~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
+.+..+.|...|.+++...+..... |...|..-+. .++.+.|...|+.+++..|. ..+|......+...++.+.|.
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~v--y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR 90 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHV--YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THH--HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHH
Confidence 4455788999999999665555555 6677888666 67777799999999999998 888988899999999999999
Q ss_pred HHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 128 DDCTEALNLDDRYI---KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 128 ~~~~~al~l~p~~~---~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
..|++++..-|... ..|......-...|+.+.......++..+.|.+..
T Consensus 91 ~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 91 ALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999877655 57777888888889999999999999998888443
No 229
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.03 Score=49.98 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=91.5
Q ss_pred chHHHHHhhhhcCCCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHH
Q 014256 56 DPVSHISSSLMNEEST-PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDC 130 (428)
Q Consensus 56 ~Ai~~~~~al~~~p~~-~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~ 130 (428)
+.+....+....++.. .-+.....++..++..|++++|+..++.++..-.+ +.+-.++|.+.+.+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5556666666666443 33445678899999999999999999999876544 667788999999999999999887
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 131 ~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
+..-.-+- .+.....+|.++...|+-.+|+..|++++..+++..
T Consensus 150 ~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 75432111 133466789999999999999999999999985543
No 230
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.78 E-value=0.007 Score=59.23 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=97.3
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..|+.++|.+....+++..-+ ... ..=.-..+-+++..=+...++.+...|+ +.++..+|..+++.+.|.+|..
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D-~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWD-PRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred HcCChHHHHHHHHHHHHhccC-hhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHH
Confidence 789999999999999987632 221 1222345678899999999999999998 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
.++.|+...|+. ..+.-+|.++..+|+..+|.+.++.++.+
T Consensus 350 ~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 350 ALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999998874 46777999999999999999999999854
No 231
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.76 E-value=0.0016 Score=65.10 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=76.6
Q ss_pred ccCCCCcchHHHHHhh-hhcCCC------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc---------cCCc------
Q 014256 49 NSYSRNYDPVSHISSS-LMNEES------TPDATSEKELGNECFKQKKFKEAIDCYSRSIA---------LSPT------ 106 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~a-l~~~p~------~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~---------~~p~------ 106 (428)
|..|++..|.+.+... +...+. ....+.|+++|.++++.|.|..++.+|.+++. +.|.
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 4678888888876654 222222 22344478899999999999999999988885 1111
Q ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256 107 ----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE 153 (428)
Q Consensus 107 ----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~ 153 (428)
..+.+|.|..|++.|+.-.|.++|.++......+|..|.|+|.|...
T Consensus 331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888877653
No 232
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.76 E-value=0.018 Score=64.31 Aligned_cols=150 Identities=14% Similarity=0.010 Sum_probs=119.9
Q ss_pred hhcCCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256 41 AKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 119 (428)
Q Consensus 41 a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~ 119 (428)
|+-.+-++| |.-+...+.|+++-+.... ... +..+.-+|.+.+++++|.++|+..++..-. ...|..+|..++.
T Consensus 1502 A~lNlEn~y--G~eesl~kVFeRAcqycd~-~~V--~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1502 AYLNLENAY--GTEESLKKVFERACQYCDA-YTV--HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHhHHHhh--CcHHHHHHHHHHHHHhcch-HHH--HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 444444443 3344556788888777631 223 667888999999999999999999988776 7889999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH----------HHHHHH
Q 014256 120 LRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL----------AEVKSL 187 (428)
Q Consensus 120 ~~~~~eA~~~~~~al~l~p~--~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l----------~~a~~~ 187 (428)
+++-+.|...+.+|+..-|. +.......|...+..|+.+.+...|+-.+.-+|.-.+.|.-| ..+..+
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 99999999999999999998 888888999999999999999999999999999877775433 445667
Q ss_pred HHHHHHhc
Q 014256 188 YEKEVFQK 195 (428)
Q Consensus 188 ~~~a~~~~ 195 (428)
|++++.++
T Consensus 1657 feRvi~l~ 1664 (1710)
T KOG1070|consen 1657 FERVIELK 1664 (1710)
T ss_pred HHHHHhcC
Confidence 77777655
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.75 E-value=0.016 Score=58.63 Aligned_cols=120 Identities=16% Similarity=0.014 Sum_probs=79.7
Q ss_pred CCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-------C------------
Q 014256 45 SPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-------P------------ 105 (428)
Q Consensus 45 ~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-------p------------ 105 (428)
+..+.+..++..-++.-.++|+++|+...+.. .++.-. ..-..+|..+|+++++.. .
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYI--LLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYI--LLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHh--hccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 33344566777777888888888887766633 333211 112344444444444321 0
Q ss_pred -----c--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256 106 -----T--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 106 -----~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~--~~~a~~~lg~~~~~lg~~~eA~~~~~~al 168 (428)
+ ..+-..+|+|..++|+.++|++.+...++..|. +..++.++-.++..++.|.++...+.+.-
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 0 223456789999999999999999999987764 56788999999999999988887777754
No 234
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=0.035 Score=55.72 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=68.4
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
.++++..|...|+++|..+-.+... |...+.+-++......|...+.+|+.+-|. ..+|+.....-..+|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itL--WlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITL--WLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 3444445555555555554433333 444555555555555555555555555555 4455555545555555555555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------HHHHHHHHHHHHHHHH
Q 014256 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVKSLYEKEVF 193 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~---------~~~l~~a~~~~~~a~~ 193 (428)
.|++-+...|+. .+|...-..-.+-+..+.|...|++.+-..|+-... .++...+...|..|++
T Consensus 163 iferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 163 IFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555542 233333333334444455555555555555543322 2344445555555554
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.66 E-value=0.043 Score=55.54 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=82.1
Q ss_pred hhhccChhhhhcCCCccccCCCCcchHHHHHhhhhcCCC-----------------------CchHHHHHHHHHHHHHhc
Q 014256 32 NLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEES-----------------------TPDATSEKELGNECFKQK 88 (428)
Q Consensus 32 ~~~~~~~~~a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~-----------------------~~~a~~~~~lg~~~~~~g 88 (428)
+...++...|+..++.-- ..-..+|..+|.++++.... +........+|+|+.+.|
T Consensus 195 Lei~pdCAdAYILLAEEe-A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklG 273 (539)
T PF04184_consen 195 LEINPDCADAYILLAEEE-ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLG 273 (539)
T ss_pred HHhhhhhhHHHhhccccc-ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhC
Confidence 334566666666555542 22345677777777654211 111233567999999999
Q ss_pred CHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Q 014256 89 KFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRYIKAYSRRATAR 151 (428)
Q Consensus 89 ~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l-~p~~~~a~~~lg~~~ 151 (428)
+.++|++.|...++.+|. ..++.|+..|++.++.|.++...+.+-=.+ -|+.+...|..+...
T Consensus 274 r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 274 RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 999999999999988875 568999999999999999998888774322 245555556555543
No 236
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.52 E-value=0.11 Score=51.09 Aligned_cols=121 Identities=11% Similarity=0.015 Sum_probs=93.1
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA 126 (428)
+..|+|.+|.....+.-+..+.. ...+..-+...-+.|+++.|-.+..++-+..++ -..+..++...+..|+|..|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 36688888888888865554432 233555666777788899998888888888444 55677788888888889999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
..-..+++...|.++.+......+|...|.|.+....+.+.-+-.
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 999999999999998888888888899998888887777666544
No 237
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.011 Score=62.44 Aligned_cols=113 Identities=29% Similarity=0.458 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKL--RRFQEAEDDCTEALNLDDRYIKAYSRRA 148 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~~~~~--~~~~eA~~~~~~al~l~p~~~~a~~~lg 148 (428)
.....|+.+++.++|..|.--|..++.+-|. +....+.+.||+.+ ++|..++..|+-|+...|...+++..++
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 3668899999999999998889999888874 55678888888876 5999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256 149 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 188 (428)
Q Consensus 149 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~ 188 (428)
.+|..+++++-|++++.-....+|.+..+...+.+....|
T Consensus 135 ~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 135 RKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999988877666666665
No 238
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.36 E-value=0.02 Score=57.49 Aligned_cols=114 Identities=12% Similarity=0.009 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-ccCCc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------
Q 014256 75 TSEKELGNECFKQKKFKEAIDCYSRSI-ALSPT---------AVAYANRAMAYLKLRRFQEAEDDCTEALN--------- 135 (428)
Q Consensus 75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al-~~~p~---------~~~~~nla~~~~~~~~~~eA~~~~~~al~--------- 135 (428)
.++....+.++-.|+|..|.+.+...- ...|. -.+|+|+|.+++.++.|.-+...|.+|++
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 347788999999999999999876642 22222 24579999999999999999999999995
Q ss_pred cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256 136 LDD---------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 188 (428)
Q Consensus 136 l~p---------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~ 188 (428)
+.| ......|+.|..|...|+.-.|.+.|.+++...-.++..|-++.++--+-
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 111 23568999999999999999999999999999999999999888876543
No 239
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.35 E-value=0.042 Score=44.55 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=59.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 014256 80 LGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-----------FQEAEDDCTEALNLDDRYIKAY 144 (428)
Q Consensus 80 lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~-----------~~eA~~~~~~al~l~p~~~~a~ 144 (428)
++..++..|++-+|++..+..+....+ ...+...|.++..+.. .-.+++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 355677777777777777777776655 2345555666655432 4456777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 145 SRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 145 ~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
+.+|.-+.....|++++.-.+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 77776655555666666666666654
No 240
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.35 E-value=0.007 Score=37.32 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 143 AYSRRATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 143 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
+++++|.++..+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666665554
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.33 E-value=0.0077 Score=58.36 Aligned_cols=144 Identities=16% Similarity=0.226 Sum_probs=102.3
Q ss_pred cCCCCcchHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK 119 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~ 119 (428)
+.-++.+++.+-.-.+......+ -.....-+|+++...+.|+++++.|+.++.+..+ -.++..+|..|-.
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 34444555555444444321111 1233567899999999999999999999987432 4678899999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHHH----------
Q 014256 120 LRRFQEAEDDCTEALNLDDRY----------IKAYSRRATARKELGKLKESIEDSEFALRLE--PQNQEI---------- 177 (428)
Q Consensus 120 ~~~~~eA~~~~~~al~l~p~~----------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--P~~~~~---------- 177 (428)
+++|++|.-...+|..+-... .-++|.++.++..+|..-.|.+..+++.++. -.|...
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 999999999988888764322 3468889999999999999999999987764 222221
Q ss_pred ----HHHHHHHHHHHHHHHH
Q 014256 178 ----KKQLAEVKSLYEKEVF 193 (428)
Q Consensus 178 ----~~~l~~a~~~~~~a~~ 193 (428)
+++++.+...|++++.
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 4556667677766653
No 242
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.29 E-value=0.0064 Score=38.87 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIA 102 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~ 102 (428)
+..+|.+|...|+|++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566666666666666666666443
No 243
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.26 E-value=0.024 Score=55.93 Aligned_cols=91 Identities=20% Similarity=0.364 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCC-----------c--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 014256 79 ELGNECFKQKKFKEAIDCYSRSIALSP-----------T--------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139 (428)
Q Consensus 79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p-----------~--------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~ 139 (428)
.-|..++++++|..|+.-|.-++++.. . ...-..+..||+++++.+.|+...-+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 456677888888888888877777521 1 123456899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 140 YIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 140 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
+..-+.+.|.|...+.+|.+|...+..+.-
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877666543
No 244
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.26 E-value=0.0076 Score=35.85 Aligned_cols=29 Identities=41% Similarity=0.493 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 014256 110 YANRAMAYLKLRRFQEAEDDCTEALNLDD 138 (428)
Q Consensus 110 ~~nla~~~~~~~~~~eA~~~~~~al~l~p 138 (428)
|.++|.++..+++++.|+..+.+++.++|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444444444444444444444444444
No 245
>PRK10941 hypothetical protein; Provisional
Probab=96.21 E-value=0.045 Score=52.12 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 150 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~ 150 (428)
.+.++-.+|.+.++|+.|+.+.+..+.++|+ +.-+.-||.+|.++|.+..|..+++..++.-|+++.+-.-...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4677888999999999999999999999999 77789999999999999999999999999999998876554443
No 246
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.19 E-value=0.028 Score=39.38 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256 109 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 150 (428)
Q Consensus 109 ~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~ 150 (428)
..+.+|..++++|+|+.|...++.+++++|+|..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467788888999999999999999999999988776554443
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.033 Score=47.62 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEAL 134 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al 134 (428)
+..++..+...|++++|+..+.+++..+|. ..+|..+-.+|..+|++.+|+..|.++.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567888899999999999999999999998 8899999999999999999999988874
No 248
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.12 E-value=0.021 Score=54.24 Aligned_cols=66 Identities=20% Similarity=0.085 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
+.|.-..+.|+.+.|...|+.|+.++|+++.++..+|......++.-+|-++|-++|.++|.+.++
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 334444455555566666666666666666665555655555555555555566666666655555
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.11 E-value=0.011 Score=36.48 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 014256 109 AYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139 (428)
Q Consensus 109 ~~~nla~~~~~~~~~~eA~~~~~~al~l~p~ 139 (428)
+++++|.|+..+|++++|+..+++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555544
No 250
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.00 E-value=0.16 Score=42.69 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=60.9
Q ss_pred CCcHHHHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 104 SPTAVAYANRAMAYLKLR---RFQEAEDDCTEALN-LDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 104 ~p~~~~~~nla~~~~~~~---~~~eA~~~~~~al~-l~p~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
++.....+|+|.++.+.. +..+.+..++..++ -+|. .-...|.++..++++|+|+.++.+....++.+|+|.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 445667788888888765 46677888888886 4443 356788899999999999999999999999999999875
Q ss_pred H
Q 014256 179 K 179 (428)
Q Consensus 179 ~ 179 (428)
.
T Consensus 109 ~ 109 (149)
T KOG3364|consen 109 E 109 (149)
T ss_pred H
Confidence 3
No 251
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.98 E-value=0.073 Score=57.15 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=81.7
Q ss_pred HHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014256 84 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 162 (428)
Q Consensus 84 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~ 162 (428)
....++|.+|+....+.+...|+ ..+...-|..+.++|++++|..+++..-...+++-..+.-+-.+|..+|++++|+.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34568899999999999999999 67777889999999999999977777777778888889999999999999999999
Q ss_pred HHHHHHhhCCC
Q 014256 163 DSEFALRLEPQ 173 (428)
Q Consensus 163 ~~~~al~l~P~ 173 (428)
.|++++..+|+
T Consensus 99 ~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 99 LYERANQKYPS 109 (932)
T ss_pred HHHHHHhhCCc
Confidence 99999999999
No 252
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.95 E-value=0.037 Score=56.82 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=88.1
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..|+.-.|+.++..++...|....+ .+.++++++.+.|-.-+|-..+.+++.+.-. +..++-+|.+|+.+.+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 7899999999999999998864432 3569999999999999999999999999865 8889999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Q 014256 129 DCTEALNLDDRYIKAYSRRATAR 151 (428)
Q Consensus 129 ~~~~al~l~p~~~~a~~~lg~~~ 151 (428)
.+.+|+.++|+++..-..+-.+.
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999987765554443
No 253
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.91 E-value=0.031 Score=53.18 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256 73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 150 (428)
Q Consensus 73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~ 150 (428)
++......+.-..+.|+.++|...|..++.++|. +.+....|......++.-+|-.+|.+|+.++|.+.+++.+++..
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4444556677788899999999999999999999 99999999999999999999999999999999999999988753
No 254
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.86 E-value=0.013 Score=34.70 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256 142 KAYSRRATARKELGKLKESIEDSEFALRLEPQN 174 (428)
Q Consensus 142 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 174 (428)
.+++++|.++..+|++++|...|.+++++.|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 478899999999999999999999999998863
No 255
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.70 E-value=0.021 Score=36.38 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Q 014256 110 YANRAMAYLKLRRFQEAEDDCTEA 133 (428)
Q Consensus 110 ~~nla~~~~~~~~~~eA~~~~~~a 133 (428)
|.++|.+|..+|+|++|+..|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445555555555555555443
No 256
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.70 E-value=0.16 Score=45.33 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHH----HH
Q 014256 75 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIK----AY 144 (428)
Q Consensus 75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~--~~~----a~ 144 (428)
..+..+|..|.+.|+++.|+++|.++...... ...+.++-.+.+..++|..+.....++-.+-.. +.. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 44789999999999999999999999887644 567888888999999999999998888766432 222 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 145 SRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 145 ~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
..-|..+...|+|.+|...|-.++.-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 344777888899999998887765443
No 257
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.12 Score=53.78 Aligned_cols=95 Identities=19% Similarity=0.105 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 149 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 149 (428)
+++-|..+|+..+|..+++.|...+...|. +....+++.||+++.+.+.|.+.+.+|=+.||.++-..+..-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 566778889999999999999999987664 5567889999999999999999999999999999988888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC
Q 014256 150 ARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 150 ~~~~lg~~~eA~~~~~~al~l~ 171 (428)
+...-|+-++|+....+.....
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhhh
Confidence 8888899999988887776544
No 258
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.64 E-value=0.12 Score=58.12 Aligned_cols=124 Identities=12% Similarity=-0.074 Sum_probs=69.3
Q ss_pred cCCCCcchHHHHHhhhhcC-CCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNE-EST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~-p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA 126 (428)
..++.++|.+.++++|..- ++. .....|..+-|....-|.-+.-.+.|++|.+.......|..+..+|.+-+.+++|
T Consensus 1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A 1549 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEA 1549 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhH
Confidence 4555566666666655432 111 1111122222222222334444455555555443345555666666666667777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
.+.++..++......+.|..+|..+.+..+-++|...+.+||.--|.
T Consensus 1550 ~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1550 DELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 77777766666666666777777777777767777777777776666
No 259
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.64 E-value=0.46 Score=49.67 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=96.2
Q ss_pred cCCCCcchHHHHHhhhhc-CCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-Cc----HHHHHHHHHHHHHh
Q 014256 50 SYSRNYDPVSHISSSLMN-EESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT----AVAYANRAMAYLKL 120 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~-~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-p~----~~~~~nla~~~~~~ 120 (428)
..|++.+-+..|.+++.. +|... -...|..+|..|...|+.+.|...|+++.... +. +..|.+.|..-+..
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 346666777777777553 55432 12347788888888888888888888888775 32 66788888888888
Q ss_pred cCHHHHHHHHHHHHhcCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-----
Q 014256 121 RRFQEAEDDCTEALNLDDR------------------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----- 177 (428)
Q Consensus 121 ~~~~eA~~~~~~al~l~p~------------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----- 177 (428)
.+++.|.....+|...-.. ..+.|...+......|-++.....|.+++.|.=-.+++
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888888888887754211 13456666666777777777777777777766444443
Q ss_pred -----HHHHHHHHHHHHHHHHh
Q 014256 178 -----KKQLAEVKSLYEKEVFQ 194 (428)
Q Consensus 178 -----~~~l~~a~~~~~~a~~~ 194 (428)
...+.++.+.|+++|.+
T Consensus 519 mfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCcc
Confidence 23344555555555443
No 260
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.38 Score=44.99 Aligned_cols=153 Identities=8% Similarity=0.029 Sum_probs=118.7
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH-HH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ-EA 126 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~-g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~-eA 126 (428)
+...-..|...-..++..+|.+..+ |.-+-+++... .+..+-++++.+.++-+|. ..+|..|-.+....|++. .-
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTV--W~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTV--WQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchH--HHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 4445677899999999999998887 43444444443 4567778899999999988 888888888888888888 78
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------------HHHHHHHHHHHHH
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------------KKQLAEVKSLYEK 190 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------------~~~l~~a~~~~~~ 190 (428)
++.++.++..|.++.-+|..+-.+....+.|+.-+.+....+..+--|-.+ ...++.-..+..+
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~ 212 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD 212 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999887654444 2445555566667
Q ss_pred HHHhchhhhHhhhc
Q 014256 191 EVFQKASKTLEKYG 204 (428)
Q Consensus 191 a~~~~~~~~~~~~~ 204 (428)
.|...|.+...+..
T Consensus 213 ~I~~vP~NeSaWnY 226 (318)
T KOG0530|consen 213 KILLVPNNESAWNY 226 (318)
T ss_pred HHHhCCCCccHHHH
Confidence 77777776655443
No 261
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.57 E-value=0.15 Score=53.16 Aligned_cols=160 Identities=13% Similarity=0.022 Sum_probs=125.6
Q ss_pred ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------
Q 014256 37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------- 106 (428)
Q Consensus 37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~--~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------- 106 (428)
........++..| ..|+.+.|...|+++...+=... .+..|.+.|..-.+..+++.|+.+.++|..+-..
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 3334445555667 88999999999999988753321 2455788888888899999999999998764111
Q ss_pred ------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--
Q 014256 107 ------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP-- 172 (428)
Q Consensus 107 ------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P-- 172 (428)
...|..++......|-++.....|++.+.+.--.|....|.|..+....-+++|.+.|++.+.|.+
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 246777788888888999999999999999988899999999999999999999999999999874
Q ss_pred CcHHHH-------------HHHHHHHHHHHHHHHhch
Q 014256 173 QNQEIK-------------KQLAEVKSLYEKEVFQKA 196 (428)
Q Consensus 173 ~~~~~~-------------~~l~~a~~~~~~a~~~~~ 196 (428)
+-.+++ ..++.|..+|+++++.=|
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 334442 246788889999988655
No 262
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.50 E-value=0.08 Score=42.94 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=73.2
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhcC-----------HHHHHHHHHHHHccCCc-HHHHHHHHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKK-----------FKEAIDCYSRSIALSPT-AVAYANRAM 115 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a-~~~~~lg~~~~~~g~-----------~~~Ai~~y~~al~~~p~-~~~~~nla~ 115 (428)
+..|++-+|++..+..+...++...+ ..+...|.++++... .-.|++||.++..+.|. +..++.+|.
T Consensus 7 ~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred HHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence 36789999999999999888776543 446677888877543 45799999999999999 888999998
Q ss_pred HHHHhcCHHHHHHHHHHHHhcC
Q 014256 116 AYLKLRRFQEAEDDCTEALNLD 137 (428)
Q Consensus 116 ~~~~~~~~~eA~~~~~~al~l~ 137 (428)
-+-...-|++++.-|++++.+.
T Consensus 87 ~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 87 QLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhhhHHHHHHHHHHHHHHhccc
Confidence 8877888999999999998764
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.50 E-value=0.4 Score=49.59 Aligned_cols=122 Identities=12% Similarity=-0.009 Sum_probs=93.7
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHH-----HHHHHHHHH-----HhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATS-----EKELGNECF-----KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 119 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~-----~~~lg~~~~-----~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~ 119 (428)
.||-+.++..+.++.+.. +.....+ .+..+...+ ...+.+.|.+++.......|+ ....+..|..+..
T Consensus 201 ~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 488889999999987733 3322211 111221111 245678899999999999999 7778999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 120 LRRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 120 ~~~~~eA~~~~~~al~l~p~~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
.|+.++|++.+++++...... .-.++.+|.++..+++|++|..+|...++.+.-
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 999999999999998644432 346889999999999999999999999987654
No 264
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.48 E-value=0.23 Score=45.72 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=63.9
Q ss_pred hcCHHHHHHHHHHHHcc------CCc--HHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhcCC------CCHHHHH
Q 014256 87 QKKFKEAIDCYSRSIAL------SPT--AVAYANRAMAYLKLRR-------FQEAEDDCTEALNLDD------RYIKAYS 145 (428)
Q Consensus 87 ~g~~~~Ai~~y~~al~~------~p~--~~~~~nla~~~~~~~~-------~~eA~~~~~~al~l~p------~~~~a~~ 145 (428)
...+++|++.|.-|+-. .+. +.++..+|.+|..+|+ +..|...|.+++.... +.....+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 45677777777666542 222 6677888888888888 4556666666665442 2257888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 146 RRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 146 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
.+|.+..++|++++|..+|.+++...-...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999997654333
No 265
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.47 E-value=0.022 Score=52.03 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 014256 84 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 140 (428)
Q Consensus 84 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~ 140 (428)
..+.++.+.|.+.|.+++++.|. ...|+.+|....+.|+++.|...|++.+++||.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455666666666666666665 5556666666666666666666666666666654
No 266
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.34 E-value=0.32 Score=49.39 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=81.0
Q ss_pred HHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 014256 92 EAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSEFALR 169 (428)
Q Consensus 92 ~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~-~~eA~~~~~~al~ 169 (428)
.-...|+++....+. ..+|.+......+.+.+.+--..|.+++..+|+++..|..-|...+..+. .+.|.+.|.++|+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445679999988885 88888888777777779999999999999999999999999988887776 9999999999999
Q ss_pred hCCCcHHHHHHHHHHHH
Q 014256 170 LEPQNQEIKKQLAEVKS 186 (428)
Q Consensus 170 l~P~~~~~~~~l~~a~~ 186 (428)
.+|+.+.++..+-...-
T Consensus 169 ~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRMEL 185 (568)
T ss_pred cCCCChHHHHHHHHHHH
Confidence 99999998766555443
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.28 E-value=0.075 Score=47.47 Aligned_cols=92 Identities=18% Similarity=0.091 Sum_probs=72.4
Q ss_pred cCCCCcchHHHHHhhhhcCC-CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p-~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~ 128 (428)
..|++++|+..++.++.... .+..+..-..+|.+.+.+|++++|+..+...-..+-.+...-.+|.+++..|+-++|..
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHH
Confidence 78999999999999986532 23344446689999999999999999876543322125556779999999999999999
Q ss_pred HHHHHHhcCCCCH
Q 014256 129 DCTEALNLDDRYI 141 (428)
Q Consensus 129 ~~~~al~l~p~~~ 141 (428)
.|++++..+++.+
T Consensus 181 ay~kAl~~~~s~~ 193 (207)
T COG2976 181 AYEKALESDASPA 193 (207)
T ss_pred HHHHHHHccCChH
Confidence 9999999986553
No 268
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.16 E-value=0.55 Score=46.36 Aligned_cols=123 Identities=20% Similarity=0.126 Sum_probs=93.9
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc---CCc------HHHHHHHHHHHHHh
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SPT------AVAYANRAMAYLKL 120 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~---~p~------~~~~~nla~~~~~~ 120 (428)
..|+.+-|+.+-.++-...|...-+ +...=......|+|+.|+...+..... .++ +.+....++..+..
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA--~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWA--ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchH--HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 6788888888888888887776544 334445566788999999887766543 233 34455555555444
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
+...|..+..+++++.|+.+.+-.--+.+++..|+..++-..++.+.+.+|+-.
T Consensus 244 -dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 244 -DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred -ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 478888999999999999999999999999999999999999999999999643
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.10 E-value=0.39 Score=47.13 Aligned_cols=111 Identities=18% Similarity=0.039 Sum_probs=70.6
Q ss_pred CCCccc-cCCCCcchHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC---C------------
Q 014256 44 PSPSGN-SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALS---P------------ 105 (428)
Q Consensus 44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~--~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~---p------------ 105 (428)
.++... +.|.++-|...+.++...++... ........+..+...|+..+|+..+...+... +
T Consensus 151 ~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~ 230 (352)
T PF02259_consen 151 KFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSG 230 (352)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhc
Confidence 333333 67788888888887776542111 12224567778888888888888777776610 0
Q ss_pred -------------c-------HHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256 106 -------------T-------AVAYANRAMAYLKL------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 154 (428)
Q Consensus 106 -------------~-------~~~~~nla~~~~~~------~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l 154 (428)
. +.++..+|...... +.++++...|..++.++|...++|+.+|..+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 231 LLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0 33445555555555 6677777888888888888888887777665543
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.06 E-value=0.35 Score=42.07 Aligned_cols=82 Identities=12% Similarity=-0.051 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 154 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l 154 (428)
.+.....+-...++.+++...+...--+.|. +..-..-|..++..|+|.+|+..++......|..+.+...++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 3667778888889999999999998889999 778888899999999999999999999999999999888999999999
Q ss_pred CCH
Q 014256 155 GKL 157 (428)
Q Consensus 155 g~~ 157 (428)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 985
No 271
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.06 E-value=0.53 Score=46.81 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=84.7
Q ss_pred CCCCcchHHHHHhhhhc-CCCCchHHHHHHHHHHHHH---------hcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHh
Q 014256 51 YSRNYDPVSHISSSLMN-EESTPDATSEKELGNECFK---------QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL 120 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~-~p~~~~a~~~~~lg~~~~~---------~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~ 120 (428)
.|+.++|+..+..++.. .+..++. +...|.+|.. ....++|+.+|.++.+++|+.-.-.|.+.++...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~--~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDT--LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHH--HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence 68999999999995544 4444444 4466665543 2347899999999999998855556777777777
Q ss_pred cC-HHHHHHHHHHHH-------hcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 121 RR-FQEAEDDCTEAL-------NLD----DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 121 ~~-~~eA~~~~~~al-------~l~----p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
|. ++...+...-.+ +.. -.+.-.+..++.+..-.|++++|.+.+++++++.|..=+..
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 65 322222222121 111 12344556677788889999999999999999987655443
No 272
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.57 Score=48.48 Aligned_cols=124 Identities=15% Similarity=-0.020 Sum_probs=94.3
Q ss_pred hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH-HHHHHH
Q 014256 57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED-DCTEAL 134 (428)
Q Consensus 57 Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~-~~~~al 134 (428)
++..+..-+.+++.+........+...+...++...+.-....++..+|. ..++.|+|.+....|....+.. ++..+.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55566666667776665422222566777788888888899999999998 8888899888777776555554 455589
Q ss_pred hcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 014256 135 NLDDRYIKAYSRR------ATARKELGKLKESIEDSEFALRLEPQNQEIKKQ 180 (428)
Q Consensus 135 ~l~p~~~~a~~~l------g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 180 (428)
...|++......+ |.....+|+..++..++.++..+.|.++.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 9999987765555 888888999999999999999999999877443
No 273
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.86 E-value=0.27 Score=41.36 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHHHhc---CHHHHHHHHHHHHc-cCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 014256 72 PDATSEKELGNECFKQK---KFKEAIDCYSRSIA-LSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 145 (428)
Q Consensus 72 ~~a~~~~~lg~~~~~~g---~~~~Ai~~y~~al~-~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~ 145 (428)
......+++++++.... +..+.+.+++..+. -.|. -...+.+|..+.++++|+.++.+++..++..|+|..+.-
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34555788999998864 56788999999997 5565 567778999999999999999999999999999987755
Q ss_pred HHHHHH
Q 014256 146 RRATAR 151 (428)
Q Consensus 146 ~lg~~~ 151 (428)
..-.+.
T Consensus 110 Lk~~ie 115 (149)
T KOG3364|consen 110 LKETIE 115 (149)
T ss_pred HHHHHH
Confidence 444433
No 274
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.82 E-value=0.046 Score=49.97 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=50.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 116 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 116 ~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
...+.++.+.|.+.|.+++.+.|.....|+++|......|+++.|...|+++++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3456678888888888888888888888888888888888888888888888888887643
No 275
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.74 E-value=0.19 Score=39.40 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHH
Q 014256 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEVKSLY 188 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~a~~~~ 188 (428)
+..+.+.+..+|++..+.+.+|.++...|++++|++.+-.+++.++++ ..++..+-.+...+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 456677777888888888888888888888888888888888777655 44444444444433
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=0.31 Score=45.15 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=76.6
Q ss_pred Cccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-----Cc-HHHHHHHH
Q 014256 46 PSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT-AVAYANRA 114 (428)
Q Consensus 46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-----p~-~~~~~nla 114 (428)
+.+| ..+++++|..++.++..-..++. .+..+-..|.......++.++..+|+++..+. |+ +..-...|
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3445 66788888888888875433221 12234455666666778888888888887763 33 22334455
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCC---CC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256 115 MAYLKLRRFQEAEDDCTEALNLDD---RY---IKAYSRRATARKELGKLKESIEDSEFA 167 (428)
Q Consensus 115 ~~~~~~~~~~eA~~~~~~al~l~p---~~---~~a~~~lg~~~~~lg~~~eA~~~~~~a 167 (428)
.=.+...+.++|++.|++++.+-- .. ...+-..+.++.++.+|.+|-..+.+-
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 556667788888888888776532 22 233444566777777787776665543
No 277
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.7 Score=43.62 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
.....|+=..|...++++.|..+..+.+.++|.++.-+--+|.+|.++|.+.-|++++...++..|+++.+
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 44566777789999999999999999999999999999999999999999999999999999999998776
No 278
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.88 Score=46.12 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=90.3
Q ss_pred cCCCCcchHHHHHhhhhcC---CC-----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNE---ES-----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAY 117 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~---p~-----~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~ 117 (428)
-.|++.+|++......+-. |. ...+..+..+|.-+..-|.|+.|...|..|.+.-.. +.+-.|+|..|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 6788888888777665543 22 124556788999999999999999999999987654 55667899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 118 LKLRRFQEAEDDCTEALNLDDRY----------IKAYSRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 118 ~~~~~~~eA~~~~~~al~l~p~~----------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
+..++-+. .++-.=.+.|.| ..++|..|...+..+++.||...+.+.++..
T Consensus 415 L~~~~~ed---~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 415 LRIGDAED---LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhccHHH---HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 99887443 233222345543 3568888999999999999999999999886
No 279
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.18 E-value=0.56 Score=36.77 Aligned_cols=46 Identities=26% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 014256 95 DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 140 (428)
Q Consensus 95 ~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~ 140 (428)
..+++.++.+|+ ..+.+.+|..++..|++++|++.+-.+++.++++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344555555555 5555556666666666666666666666555544
No 280
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.94 E-value=0.11 Score=33.53 Aligned_cols=27 Identities=41% Similarity=0.391 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256 109 AYANRAMAYLKLRRFQEAEDDCTEALN 135 (428)
Q Consensus 109 ~~~nla~~~~~~~~~~eA~~~~~~al~ 135 (428)
++.++|.+|..+|+|++|+..+.+++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555543
No 281
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.94 E-value=1.2 Score=44.06 Aligned_cols=129 Identities=9% Similarity=0.017 Sum_probs=99.3
Q ss_pred hhhcCCCccc---cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHH-
Q 014256 40 SAKKPSPSGN---SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAM- 115 (428)
Q Consensus 40 ~a~~~~~~~y---~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~- 115 (428)
..+..++..+ ..|+-..|.+.-.++-++-..+.+...+...++.-.-.|+|+.|...|+..+. +|.....-.+|.
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLy 161 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLY 161 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHH
Confidence 3444455554 67888888888887766655666666677888999999999999999987765 676444444443
Q ss_pred -HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 116 -AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 116 -~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
--..+|.++.|..+.+.+-...|.-+-++.-.-..+...|+|+.|++.......
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 344678999999999999999999988888777888899999999988776553
No 282
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.83 E-value=0.22 Score=53.31 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH----------ccCCc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSI----------ALSPT-----------AVAYANRAMAYLKLRRFQEAEDDCTEALN 135 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al----------~~~p~-----------~~~~~nla~~~~~~~~~~eA~~~~~~al~ 135 (428)
+++.+.-+...++.+.|+++|+++- .-+|. ..+|...|......|+.+.|+..|..|-.
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 7788888888999999999998752 22332 35666778888889999999999888753
Q ss_pred c---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 136 L---------------------DDRYIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 136 l---------------------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
. ...+..|.|.+|..|...|++.+|+..|.++-.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2 235567889999999999999999998877644
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.82 E-value=4.5 Score=35.80 Aligned_cols=120 Identities=7% Similarity=-0.023 Sum_probs=91.6
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcH-----HHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA-----VAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~-----~~~~nla~~~~~~~~~~ 124 (428)
..+..++|+..|..+-+..-...........|-+....|+-..|+..|.++-...|-+ .+...-|..+...|-|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 4577888888888887776666666667788999999999999999999988766542 23444567777889999
Q ss_pred HHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 125 EAEDDCTEAL-NLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 125 eA~~~~~~al-~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
.-..-.+..- .-+|--..+.--||.+-.+.|++..|...|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8776555432 22344456667789999999999999999998876
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=3.6 Score=38.39 Aligned_cols=98 Identities=21% Similarity=0.172 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC---c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSP---T----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-----DRYIKAY 144 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p---~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~-----p~~~~a~ 144 (428)
+..-+++|...++|++|..|+.++++-.. . +..|-..|+..-.+..+.+++..+++|..+. |+-...-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma 113 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA 113 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 34456677778899999999999985432 1 4566677788888899999999999998764 3322222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256 145 SRRATARKELGKLKESIEDSEFALRLEPQN 174 (428)
Q Consensus 145 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 174 (428)
...+--....-+.++|++.|++++.+--.+
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 233333344567789999999888765443
No 285
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.51 E-value=1 Score=41.40 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=70.5
Q ss_pred cCCCCcchHHHHHhhhhc-----CCCCchHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHccC--Cc-----HHHH
Q 014256 50 SYSRNYDPVSHISSSLMN-----EESTPDATSEKELGNECFKQKK-------FKEAIDCYSRSIALS--PT-----AVAY 110 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~-----~p~~~~a~~~~~lg~~~~~~g~-------~~~Ai~~y~~al~~~--p~-----~~~~ 110 (428)
....+++|+..|.-++-. .+....|..+..+|++|...|+ +..|++.|.++++.. |. ..+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 344567777776666443 2233456778889999998888 556777888887654 22 5678
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-HHHHHHH
Q 014256 111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-KAYSRRA 148 (428)
Q Consensus 111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~-~a~~~lg 148 (428)
+.+|..+.+.|++++|..+|.+++....... ..+.++|
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 8899999999999999999999997654333 3444444
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.50 E-value=0.14 Score=33.08 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccC
Q 014256 75 TSEKELGNECFKQKKFKEAIDCYSRSIALS 104 (428)
Q Consensus 75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~ 104 (428)
.++.++|.+|...|+|++|+.++.+++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 457899999999999999999999998763
No 287
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.045 Score=53.02 Aligned_cols=130 Identities=15% Similarity=0.055 Sum_probs=91.8
Q ss_pred hhhcccchhhhhccChhhhhcCCCccccCCCC------cchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHH
Q 014256 23 MKHKASSKDNLVSSSLKSAKKPSPSGNSYSRN------YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDC 96 (428)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~a~~~~~~~y~~g~~------~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~ 96 (428)
...+..++..|.++++..|...+..+....++ .+... +.-..... ......+++.+-++.+.+..|+..
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~---~~~~~~~~--r~~~~~n~~~~~lk~~~~~~a~~~ 297 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQEN---RIPPLREL--RFSIRRNLAAVGLKVKGRGGARFR 297 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhccccccccccccc---cccccccc--ccccccchHHhcccccCCCcceec
Confidence 45566788888888888887766666411111 11111 00001111 111245678888999999999999
Q ss_pred HHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 014256 97 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 157 (428)
Q Consensus 97 y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~ 157 (428)
-..++..++. ..+++.+++.++.+.++++|++++..+....|.+......+..+......+
T Consensus 298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 8888887777 788999999999999999999999999999999987766666655555444
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.35 E-value=4 Score=39.01 Aligned_cols=123 Identities=13% Similarity=-0.010 Sum_probs=88.4
Q ss_pred cCCCCcchHHHHHhhhhcC----CCCc--hHHHHHHHHHHHHHhc-CHHHHHHHHHHHHcc----CC------c-----H
Q 014256 50 SYSRNYDPVSHISSSLMNE----ESTP--DATSEKELGNECFKQK-KFKEAIDCYSRSIAL----SP------T-----A 107 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~----p~~~--~a~~~~~lg~~~~~~g-~~~~Ai~~y~~al~~----~p------~-----~ 107 (428)
+.|+++.|..+|.++-... |... -+..+++.|...+..+ +|+.|+.++++++++ .. + .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 6789999999999986654 2221 2445889999999999 999999999999887 21 1 3
Q ss_pred HHHHHHHHHHHHhcCHHHHHH---HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 108 VAYANRAMAYLKLRRFQEAED---DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 108 ~~~~nla~~~~~~~~~~eA~~---~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
.++..++.+|+..+.++...+ ..+.+-.-.|+.+..++..-.+....++.+++.+.+.+.+.--+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 456778999999887654433 33334444577777764444444448889999999998887543
No 289
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.02 E-value=1.1 Score=36.87 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=63.4
Q ss_pred cCCCCcchHHHHHhhhhcCCCC----------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHc-------cCCc-----H
Q 014256 50 SYSRNYDPVSHISSSLMNEEST----------PDATSEKELGNECFKQKKFKEAIDCYSRSIA-------LSPT-----A 107 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~----------~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~-------~~p~-----~ 107 (428)
..|.|++|...+.+++...... .++.++-.++..+...|+|++++..-.+++. ++.+ .
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 4577888999999988764332 2456677889999999999987776666554 4544 3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256 108 VAYANRAMAYLKLRRFQEAEDDCTEALN 135 (428)
Q Consensus 108 ~~~~nla~~~~~~~~~~eA~~~~~~al~ 135 (428)
.+-+++|.++-.+|+.++|+..|..+.+
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4568899999999999999999988764
No 290
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.78 E-value=0.3 Score=46.77 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=77.8
Q ss_pred HHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 96 CYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR-RATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 96 ~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~-lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
.|.++-...|+ +..|...+....+.|.|.+--..|.+++..+|.++..|.. .+.-+...++++.+...|.++++++|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 34455555565 7888888888888899999999999999999999999887 455677889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHH
Q 014256 174 NQEIKKQLAEVKSLYE 189 (428)
Q Consensus 174 ~~~~~~~l~~a~~~~~ 189 (428)
++.++..+-...-.|-
T Consensus 175 ~p~iw~eyfr~El~yi 190 (435)
T COG5191 175 SPRIWIEYFRMELMYI 190 (435)
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999877666555443
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.69 E-value=2.5 Score=44.79 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=91.0
Q ss_pred cCCCCcchHHHHHhhhh-------cCCCCchHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHccCCcHHHHHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLM-------NEESTPDATSEKELGNECFKQK-----KFKEAIDCYSRSIALSPTAVAYANRAMAY 117 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~-------~~p~~~~a~~~~~lg~~~~~~g-----~~~~Ai~~y~~al~~~p~~~~~~nla~~~ 117 (428)
...|.+.|+.+|..+.. .. +..+ .+.+|.+|.+.. ++..|+.+|.++-.... +.+.+++|.+|
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a--~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG--LPPA--QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc--CCcc--ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 45688899999999877 22 2334 668999999843 78999999999988754 55667788888
Q ss_pred HHhc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 014256 118 LKLR---RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL----GKLKESIEDSEFALRLE 171 (428)
Q Consensus 118 ~~~~---~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l----g~~~eA~~~~~~al~l~ 171 (428)
..-. ++..|..+|..|.. -.+..+.+++|.+|..- -+...|..++.++....
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8765 67899999999875 45778999999988653 36789999999999887
No 292
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.55 E-value=1.1 Score=49.88 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCCCHHHHHH
Q 014256 78 KELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR-------RFQEAEDDCTEALNLDDRYIKAYSR 146 (428)
Q Consensus 78 ~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~-------~~~eA~~~~~~al~l~p~~~~a~~~ 146 (428)
.....++...+.|++|+..|++...-.|. ..+.+..|...+.+- .+++|+.-|++.. -.|.-+--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 34566777888999999999999999887 678888898887653 3555555555432 23455666888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 147 RATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 147 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
.|.+|.++|+|++-+..|.-+++..|+++++
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 8999999999999999999999999999876
No 293
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=1.4 Score=42.74 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=79.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHc
Q 014256 80 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRY---IKAYSRRATARKEL 154 (428)
Q Consensus 80 lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l-~p~~---~~a~~~lg~~~~~l 154 (428)
-+..++..|++.+|...+.+.+.-.|. -.++..--.+++-+|+...-...+.+.+-. +++- ....-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 445677789999999999999999998 445555556777788888888888888866 5554 55666678889999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHH
Q 014256 155 GKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 155 g~~~eA~~~~~~al~l~P~~~~~ 177 (428)
|-|++|.....++++++|.+.-+
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa 211 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWA 211 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHH
Confidence 99999999999999999987654
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.37 E-value=3.7 Score=40.09 Aligned_cols=110 Identities=20% Similarity=0.156 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C-C-------
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNL--D-D------- 138 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~~~~~~~~~eA~~~~~~al~l--~-p------- 138 (428)
+..|...+..+.+.|.++.|...+.++...++. +.+.+..+..+...|+..+|+..+...+.. . +
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 345788899999999999999999999887632 566777888999999999999988887771 0 0
Q ss_pred ------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 014256 139 ------------------------RYIKAYSRRATARKEL------GKLKESIEDSEFALRLEPQNQEIKKQLAE 183 (428)
Q Consensus 139 ------------------------~~~~a~~~lg~~~~~l------g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 183 (428)
...++++.+|.....+ +..+++...|..++.++|+...++..+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0145677777777777 78888899999999999887776555444
No 295
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.35 E-value=4.8 Score=38.47 Aligned_cols=115 Identities=16% Similarity=0.056 Sum_probs=62.9
Q ss_pred CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhc----
Q 014256 52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLR---- 121 (428)
Q Consensus 52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~---- 121 (428)
.+...|..+|..+... .+..+ .+.+|..|.. ..++.+|..+|.++...... ..+.+++|.+|..-.
T Consensus 91 ~~~~~A~~~~~~~a~~--g~~~a--~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 91 RDKTKAADWYRCAAAD--GLAEA--LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred ccHHHHHHHHHHHhhc--ccHHH--HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 3455566666644332 23333 4466666665 33666677777766665432 233555565555431
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCC
Q 014256 122 ---RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL----GKLKESIEDSEFALRLEP 172 (428)
Q Consensus 122 ---~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l----g~~~eA~~~~~~al~l~P 172 (428)
+...|...|.++.... ++.+.+++|.+|..- .++.+|..+|.++-....
T Consensus 167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2235666666665554 556666666555431 255666666666666544
No 296
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.24 E-value=1.1 Score=45.62 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=73.4
Q ss_pred hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Q 014256 57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-FQEAEDDCTEAL 134 (428)
Q Consensus 57 Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~-~~eA~~~~~~al 134 (428)
-...|+.++..-+.+... |......+.+.+.|.+--..|.+++..+|+ +.+|..-|.-.+..+. .+.|...+.+++
T Consensus 90 Iv~lyr~at~rf~~D~~l--W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKL--WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHhcCCCHHH--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 456788888877665555 778888777788899999999999999999 9999998888877776 899999999999
Q ss_pred hcCCCCHHHHH
Q 014256 135 NLDDRYIKAYS 145 (428)
Q Consensus 135 ~l~p~~~~a~~ 145 (428)
+.+|+++..|.
T Consensus 168 R~npdsp~Lw~ 178 (568)
T KOG2396|consen 168 RFNPDSPKLWK 178 (568)
T ss_pred hcCCCChHHHH
Confidence 99999987643
No 297
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.92 E-value=0.44 Score=48.66 Aligned_cols=91 Identities=16% Similarity=-0.013 Sum_probs=76.3
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~---g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~ 124 (428)
+..+....|+..|.+++...|..... +.+++-++++. |+.-.|+.....+++++|. ..+|+.++.++..++++.
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~--l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ 462 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYL--LENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL 462 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHH--HHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence 34566778999999999988875443 66788887774 6788899999999999998 889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCH
Q 014256 125 EAEDDCTEALNLDDRYI 141 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~ 141 (428)
+|+++...+....|.+.
T Consensus 463 eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 463 EALSCHWALQMSFPTDV 479 (758)
T ss_pred HhhhhHHHHhhcCchhh
Confidence 99999998888888664
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.87 E-value=1.1 Score=39.08 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=62.6
Q ss_pred cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC
Q 014256 48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 122 (428)
Q Consensus 48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~ 122 (428)
+...++.+++...+.-+--+.|+...... ..|..++..|+|.+|+..++.+.+-.|. +.+-..++.|+..+|+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~--~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDL--FDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHH--HHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 34667889999999999889999988844 8899999999999999999998887787 7777778889887776
No 299
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.83 E-value=2.1 Score=42.60 Aligned_cols=97 Identities=14% Similarity=0.012 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc----CCc-HHHHHHHHHHHHH---hcCHHHHHHHHHH-HHhcCCCCHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIAL----SPT-AVAYANRAMAYLK---LRRFQEAEDDCTE-ALNLDDRYIKAYSRR 147 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~----~p~-~~~~~nla~~~~~---~~~~~eA~~~~~~-al~l~p~~~~a~~~l 147 (428)
..++=..|....+|+.-+...+..-.+ -++ ....+.+|.++.+ .|+.++|+..+.. .....+.++..+..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 445555677777888777777665554 122 4455667777777 7888888888888 445556778888888
Q ss_pred HHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 014256 148 ATARKEL---------GKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 148 g~~~~~l---------g~~~eA~~~~~~al~l~P~ 173 (428)
|.+|+.+ ...++|+..|.++..++|+
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 8887754 1244556666666665543
No 300
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=3 Score=39.19 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=84.6
Q ss_pred HHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHH
Q 014256 85 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK-ESI 161 (428)
Q Consensus 85 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~-~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~-eA~ 161 (428)
.+..+-..|+..-..+|.++|. ..+|..|=.|+..++ +..+-++.++..+.-+|+|..+|+.+-.+...+|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 3445667888888999999998 777777777776664 6778889999999999999999999999999999888 778
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256 162 EDSEFALRLEPQNQEIKKQLAEVKSLY 188 (428)
Q Consensus 162 ~~~~~al~l~P~~~~~~~~l~~a~~~~ 188 (428)
...+.++..+..|-.++....=+.+.|
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F 160 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFF 160 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHH
Confidence 888999999998888865544444433
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.38 E-value=0.64 Score=47.01 Aligned_cols=130 Identities=14% Similarity=0.045 Sum_probs=94.2
Q ss_pred cCCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256 43 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR 121 (428)
Q Consensus 43 ~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~ 121 (428)
..+..++..|+.-.|-..+..+|...|..+.-.. ..+.++...|+|+.|.....-+-.+-.. ..+..-+-....+++
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh
Confidence 3344455778888888888888888888877633 6778888899999998877655443322 333333445567888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174 (428)
Q Consensus 122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 174 (428)
++++|.....-.+.-.-.++...---+..-..+|-+++|.-++++++.++|..
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99999888877776666666665555666677888999999999999998753
No 302
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.35 E-value=0.85 Score=35.92 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=27.7
Q ss_pred HHhcCHHHHHHHHHHHHccCCc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256 85 FKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136 (428)
Q Consensus 85 ~~~g~~~~Ai~~y~~al~~~p~----------~~~~~nla~~~~~~~~~~eA~~~~~~al~l 136 (428)
.+.|+|..|++.+.+....... ..+..++|.++...|++++|+..+++|+.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666666666665543211 123444555555555555555555555544
No 303
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.16 E-value=7.9 Score=37.92 Aligned_cols=112 Identities=11% Similarity=-0.014 Sum_probs=81.0
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHHHHHHh------------cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH
Q 014256 58 VSHISSSLMNEESTPDATSEKELGNECFKQ------------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 58 i~~~~~al~~~p~~~~a~~~~~lg~~~~~~------------g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~ 124 (428)
...|++.+..+|.+..+ |..+...--.. .-.+..+.+|++|++.+|+ ..++..+-.+..+..+-+
T Consensus 5 ~~el~~~v~~~P~di~~--Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEA--WLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHHHHhCcccHHH--HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 35678888999988776 54554332222 2256778899999999998 777776666777888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC
Q 014256 125 EAEDDCTEALNLDDRYIKAYSRRATARK---ELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a~~~lg~~~~---~lg~~~eA~~~~~~al~l~ 171 (428)
+...-+++++..+|.++..|..+-.... ..-.+......|.++++.-
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 8899999999999999887665443322 2335778888888887643
No 304
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.11 E-value=1.4 Score=41.61 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 149 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 149 (428)
..++=..+...++++.|..+-.+.+.++|. +.-+.-+|.+|.++|.+..|+.+++..+..-|+.+.+-.-++.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 456667888899999999999999999998 7788999999999999999999999999999999877554443
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.02 E-value=2.7 Score=36.13 Aligned_cols=79 Identities=13% Similarity=-0.021 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 014256 79 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 157 (428)
Q Consensus 79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~ 157 (428)
.....-...++..++...+...--+.|+ +..-..-|..++..|+|.+|+..+.....-.+..+.+...++.|++.+|+.
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 4444444577788887777777777787 666666788888888888888888888877777777777788888888764
No 306
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.98 E-value=2.5 Score=44.73 Aligned_cols=123 Identities=14% Similarity=0.017 Sum_probs=89.0
Q ss_pred hhhcCCCccccCC------CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc---CHHHHHHHHHHHHccCCcHHHH
Q 014256 40 SAKKPSPSGNSYS------RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPTAVAY 110 (428)
Q Consensus 40 ~a~~~~~~~y~~g------~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g---~~~~Ai~~y~~al~~~p~~~~~ 110 (428)
.+...+|.+|..| ++..|..+|.++-... ++.+ .+.+|.++.... ++..|..+|..|....- ..++
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~ 363 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAI 363 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHH
Confidence 3445566666222 6677999999998776 4455 669999998765 68899999999986543 6778
Q ss_pred HHHHHHHHHh----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 014256 111 ANRAMAYLKL----RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL-GKLKESIEDSEFALR 169 (428)
Q Consensus 111 ~nla~~~~~~----~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l-g~~~eA~~~~~~al~ 169 (428)
+++|.||..- .+...|..++.++...+ ++.+.+.++..+... +.+..+...+...-.
T Consensus 364 ~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 364 YRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 8888888653 47999999999999988 677777777766544 666655554444333
No 307
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.69 E-value=0.43 Score=30.90 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 142 KAYSRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 142 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
.+|..+|.+-...++|++|+.+|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777777777777777777765
No 308
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.65 E-value=0.45 Score=47.34 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=73.6
Q ss_pred hhcCCCccccCCCCcchHHHHHhhhhcCCC--------Cch--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHccC
Q 014256 41 AKKPSPSGNSYSRNYDPVSHISSSLMNEES--------TPD--------ATSEKELGNECFKQKKFKEAIDCYSRSIALS 104 (428)
Q Consensus 41 a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~--------~~~--------a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~ 104 (428)
|+..-..+|++++|..|+-.|..+|++... .+. ....-.+..||.+.++.+.|+.+-.++|.++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 455555667888888888888888876321 111 1123467889999999999999999999999
Q ss_pred Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256 105 PT-AVAYANRAMAYLKLRRFQEAEDDCTEAL 134 (428)
Q Consensus 105 p~-~~~~~nla~~~~~~~~~~eA~~~~~~al 134 (428)
|. ..-+...|.|+..+.+|.+|-..+.-+.
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 7788889999999999999988776654
No 309
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.61 E-value=7.1 Score=37.27 Aligned_cols=110 Identities=15% Similarity=-0.038 Sum_probs=79.3
Q ss_pred hhcCCCcccc-----CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHccCCcHH
Q 014256 41 AKKPSPSGNS-----YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-------KFKEAIDCYSRSIALSPTAV 108 (428)
Q Consensus 41 a~~~~~~~y~-----~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g-------~~~~Ai~~y~~al~~~p~~~ 108 (428)
+...+|..|. ..++.+|..+|.++-...-... ....+.+|..|..-. +...|+..|.++.... .+.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~ 188 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPD 188 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHH
Confidence 4444555552 3388899999999988753221 233557777777641 3347999999987765 367
Q ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256 109 AYANRAMAYLK----LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155 (428)
Q Consensus 109 ~~~nla~~~~~----~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg 155 (428)
+.+++|.+|.. ..++.+|..+|.++..... ..+.++++ ++...|
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 78888888866 3489999999999999888 88899999 666655
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.24 E-value=5.1 Score=38.32 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=70.1
Q ss_pred HHHhcCHHHHHHHHHHHHcc----CCc-----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhc----CC---CC------
Q 014256 84 CFKQKKFKEAIDCYSRSIAL----SPT-----AVAYANRAMAYLKLR-RFQEAEDDCTEALNL----DD---RY------ 140 (428)
Q Consensus 84 ~~~~g~~~~Ai~~y~~al~~----~p~-----~~~~~nla~~~~~~~-~~~eA~~~~~~al~l----~p---~~------ 140 (428)
..++|+++.|..+|.++-.. +|+ +..++|.|...+..+ ++++|..++++|..+ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999998653 454 577999999999999 999999999999887 32 11
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCcHHH
Q 014256 141 -IKAYSRRATARKELGKLK---ESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 141 -~~a~~~lg~~~~~lg~~~---eA~~~~~~al~l~P~~~~~ 177 (428)
..++..++.+|...+.++ +|...++.+-...|+.+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~ 123 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV 123 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH
Confidence 345777888888888764 4555555555555765554
No 311
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.22 E-value=2 Score=33.75 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=46.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCC----C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 115 MAYLKLRRFQEAEDDCTEALNLDD----R-----YIKAYSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 115 ~~~~~~~~~~eA~~~~~~al~l~p----~-----~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
.-.++.|+|.+|.+.+.+...... . ...+..++|.++...|++++|+..+++++++..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345678999999887777665432 1 256788899999999999999999999998864
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.17 E-value=0.7 Score=41.13 Aligned_cols=102 Identities=12% Similarity=0.011 Sum_probs=76.6
Q ss_pred cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------
Q 014256 36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------- 106 (428)
Q Consensus 36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------- 106 (428)
.....++..+|..| ..|+++.|++.|.++........ ....+..+-.+.+..|+|..+..+..++-..-..
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 33445667788888 99999999999999887654332 2344667778888899999999998888665321
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~ 137 (428)
..+-...|..++..++|..|...|-.+..-.
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3345567889999999999999887776444
No 313
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=2.6 Score=40.32 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH-HH--HHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR-RA--TARK 152 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~-lg--~~~~ 152 (428)
-...|......|++.+|...|..++...|. ..+...++.||+..|+.+.|...+...-.-... +.+.. .+ ..+.
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~i~ll~ 214 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQIELLE 214 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHHHHHHH
Confidence 446778888999999999999999999998 888899999999999999998876653221111 12222 11 2222
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 153 ELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 153 ~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
+.....+ ...+.+.+.-+|++.++.
T Consensus 215 qaa~~~~-~~~l~~~~aadPdd~~aa 239 (304)
T COG3118 215 QAAATPE-IQDLQRRLAADPDDVEAA 239 (304)
T ss_pred HHhcCCC-HHHHHHHHHhCCCCHHHH
Confidence 2222211 246777788899998873
No 314
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.05 E-value=2.6 Score=31.99 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H---HHHHHHHHHHHHhcCHHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTE 132 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~---~~~~nla~~~~~~~~~~eA~~~~~~ 132 (428)
....|.-++...+.++|+..+.++++..++ + .+.-.+..+|...|+|.+.+...-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777778888888888888888887665 2 2334445667777777776665443
No 315
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.77 E-value=0.51 Score=30.55 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256 109 AYANRAMAYLKLRRFQEAEDDCTEALNL 136 (428)
Q Consensus 109 ~~~nla~~~~~~~~~~eA~~~~~~al~l 136 (428)
+|..+|.+.+..++|++|+.+|.+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5666777777777777777777777765
No 316
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.05 E-value=13 Score=37.72 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=91.5
Q ss_pred cCCC-CcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHH--HHHHHcc---------CCc----HHHHHHH
Q 014256 50 SYSR-NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDC--YSRSIAL---------SPT----AVAYANR 113 (428)
Q Consensus 50 ~~g~-~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~--y~~al~~---------~p~----~~~~~nl 113 (428)
..|. -+.|+..+..++...+.+.... +. ...+-..-|.+|+.. +.+.+.+ -|- ...-+.+
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~---n~-v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECE---NI-VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHH---HH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 4555 6778899999998887765432 22 233334456666542 3333332 221 3333333
Q ss_pred --HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 014256 114 --AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 191 (428)
Q Consensus 114 --a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a 191 (428)
|..++..|+|.++.-.+.=..+++| .+.++-.+|.+.....+|++|..++.. +-|++........+|.....+-
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKH 542 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHh
Confidence 4557789999999999999999999 899999999999999999999988754 5554444445666666666554
Q ss_pred HH
Q 014256 192 VF 193 (428)
Q Consensus 192 ~~ 193 (428)
+.
T Consensus 543 ~~ 544 (549)
T PF07079_consen 543 LP 544 (549)
T ss_pred hh
Confidence 43
No 317
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.87 E-value=2.1 Score=45.28 Aligned_cols=106 Identities=8% Similarity=-0.051 Sum_probs=58.2
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHH
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~ 127 (428)
.|++++|.+.|-.+=..+ . .-..+.+.|+|-.....++..-.-+.+ ..++.++|..+..+..|++|.
T Consensus 747 ~g~feeaek~yld~drrD---L-------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---L-------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccchhh---h-------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677766665431111 0 112234455555555555443332222 445556666666666666665
Q ss_pred HHHHHHH----------------------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014256 128 DDCTEAL----------------------NLDDRYIKAYSRRATARKELGKLKESIEDSEF 166 (428)
Q Consensus 128 ~~~~~al----------------------~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 166 (428)
++|.++- ..-|++.+.+-.+|.++...|..++|++.|-+
T Consensus 817 ~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 817 KYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 5555432 23366666777777777788888887776644
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.82 E-value=4.6 Score=41.10 Aligned_cols=114 Identities=11% Similarity=0.163 Sum_probs=90.3
Q ss_pred HHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014256 85 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED 163 (428)
Q Consensus 85 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~ 163 (428)
...|+.-.|-.-...++...|. +.....++.++..+|.|+.|..+..-+-..-..-.++..-+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 4468888888888888888887 777777899999999999999998877766666666666677778899999999998
Q ss_pred HHHHHhhCCCcHH----------HHHHHHHHHHHHHHHHHhchhh
Q 014256 164 SEFALRLEPQNQE----------IKKQLAEVKSLYEKEVFQKASK 198 (428)
Q Consensus 164 ~~~al~l~P~~~~----------~~~~l~~a~~~~~~a~~~~~~~ 198 (428)
..-.+.-+-.+++ ..+.++++.-++++.+.++|..
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8777755444444 4778888988999888887543
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.97 E-value=2.8 Score=40.07 Aligned_cols=64 Identities=19% Similarity=0.093 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
..++..++..+...++++.++..+++.+.++|-+-.+|.++-.+|...|+...|+..|++.-.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567778889999999999999999999999999999999999999999999999999988764
No 320
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.93 E-value=2 Score=40.66 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=4.9
Q ss_pred hcCCCCHHHHHHHHH
Q 014256 135 NLDDRYIKAYSRRAT 149 (428)
Q Consensus 135 ~l~p~~~~a~~~lg~ 149 (428)
.+.|++...|+.+|.
T Consensus 10 ~l~P~~G~p~nQLAv 24 (278)
T PF10373_consen 10 RLLPSNGNPYNQLAV 24 (278)
T ss_dssp HH-TTBSHHHHHHHH
T ss_pred HhCCCCCCcccchhh
Confidence 333333333333333
No 321
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.74 E-value=1.7 Score=27.75 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=5.5
Q ss_pred HHHHHHhcCHHHHHHH
Q 014256 81 GNECFKQKKFKEAIDC 96 (428)
Q Consensus 81 g~~~~~~g~~~~Ai~~ 96 (428)
|..+..+|+|++|+..
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3333333333333333
No 322
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.72 E-value=27 Score=34.87 Aligned_cols=102 Identities=16% Similarity=0.009 Sum_probs=69.8
Q ss_pred hhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--------------CC-------------c---HHHHHH
Q 014256 63 SSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--------------SP-------------T---AVAYAN 112 (428)
Q Consensus 63 ~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--------------~p-------------~---~~~~~n 112 (428)
..+..+|-+.++ +..++.++..+|+++.|.+..++|+-. ++ + ..+.+.
T Consensus 31 ~ll~~~PyHidt--Llqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 31 NLLQKNPYHIDT--LLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHHHCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 445667776666 779999999999999999988888532 10 0 133455
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 014256 113 RAMAYLKLRRFQEAEDDCTEALNLDDR-YIKA-YSRRATARKELGKLKESIEDSEF 166 (428)
Q Consensus 113 la~~~~~~~~~~eA~~~~~~al~l~p~-~~~a-~~~lg~~~~~lg~~~eA~~~~~~ 166 (428)
......+.|-+.-|.+.|+-.+.+||. |+-+ .+.+-..-.+.++|+--+..++.
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 667778889999999999999999998 6644 33333333445666544444444
No 323
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.14 E-value=2.1 Score=40.47 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=52.9
Q ss_pred HHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256 93 AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE 153 (428)
Q Consensus 93 Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~ 153 (428)
|..+|.+|+.+.|+ ...|+.+|..+...|+.-.|+-.|-+++-..--.+.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999 89999999999999999999999999998877778889999888877
No 324
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.92 E-value=12 Score=36.74 Aligned_cols=117 Identities=9% Similarity=-0.020 Sum_probs=84.5
Q ss_pred CcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH---HhcCHHHHHHH
Q 014256 54 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL---KLRRFQEAEDD 129 (428)
Q Consensus 54 ~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~---~~~~~~eA~~~ 129 (428)
.+..+..|++||+.+|+.... +..+=..+.+..+-+.....+++++..+|+ ..+|..+-.... ..-.+......
T Consensus 47 ~E~klsilerAL~~np~~~~L--~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERL--LLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 456688999999999977655 334444555666888888999999999998 666654433222 23356777777
Q ss_pred HHHHHhcCC------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 130 CTEALNLDD------------------RYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 130 ~~~al~l~p------------------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
|.+++..-. .....+.+++......|..+.|+..++..++++=
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 777764311 1245678888888999999999999999999873
No 325
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.66 E-value=16 Score=37.47 Aligned_cols=123 Identities=15% Similarity=0.042 Sum_probs=88.8
Q ss_pred cCCCCcchHHHHHhhhhcCCC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--------HHHHHHHHHHHHHh
Q 014256 50 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKL 120 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~-~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~nla~~~~~~ 120 (428)
..|-++.|...|..+.+.-.. +..+.+-.++|..|.+.|+-+.--+..+..-..+.. +.+++..|...+++
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999887532 233444568899999988755444333332222211 45688899999999
Q ss_pred cCHHHHHHHHHHHHhcCCC-C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 121 RRFQEAEDDCTEALNLDDR-Y-----IKAYSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 121 ~~~~eA~~~~~~al~l~p~-~-----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
+++.||.....+.++.... + .-.+..+|.+..-+|+..++.+..+-++.+..
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 9999999999999987621 1 22355567888889999999998888887763
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.42 E-value=2.6 Score=26.85 Aligned_cols=29 Identities=17% Similarity=0.136 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCHHHHHHH--HHHHHhcCC
Q 014256 110 YANRAMAYLKLRRFQEAEDD--CTEALNLDD 138 (428)
Q Consensus 110 ~~nla~~~~~~~~~~eA~~~--~~~al~l~p 138 (428)
++.+|..+..+|+|++|+.. |.-+..+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44445555555555555555 224444444
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.39 E-value=0.9 Score=26.46 Aligned_cols=18 Identities=33% Similarity=0.123 Sum_probs=7.4
Q ss_pred HHHHHHHHHhcCHHHHHH
Q 014256 111 ANRAMAYLKLRRFQEAED 128 (428)
Q Consensus 111 ~nla~~~~~~~~~~eA~~ 128 (428)
+++|.++..+|++++|..
T Consensus 5 ~~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 5 LALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 334444444444444433
No 328
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.26 E-value=14 Score=38.78 Aligned_cols=111 Identities=8% Similarity=-0.050 Sum_probs=88.6
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-Cc-HHHHHHHHHHHHHhcCHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT-AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-p~-~~~~~nla~~~~~~~~~~eA~ 127 (428)
..|+++.....|++++-......+. |...+.-....|+..-|-..+.++.++. |. +.....-+..--..|++..|.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~ef--Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEF--WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHH--HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 6788888888888887766555555 6677777777788888888888888876 44 666666677777788999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014256 128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 162 (428)
Q Consensus 128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~ 162 (428)
..+++...--|....+-.+......++|+.+.+..
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 99999888778888888888888888888887774
No 329
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.16 E-value=4.6 Score=40.22 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------CCHHH
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--------RYIKA 143 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p--------~~~~a 143 (428)
.+.++|.-|..-|+++.|+.+|.++-..... ...|.|+-.+-.-+|+|..-...-.+|...-. -.+++
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 3778999999999999999999997766654 45678888888888988887777777665410 11345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256 144 YSRRATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 144 ~~~lg~~~~~lg~~~eA~~~~~~al 168 (428)
...-|.+...+++|..|..+|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6667788888889999988876554
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.01 E-value=3.8 Score=35.19 Aligned_cols=71 Identities=10% Similarity=0.013 Sum_probs=60.0
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 122 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~ 122 (428)
..++.+++...+.-.--+.|+...... --|..++..|+|.+|+..++...+-.+. +..-..++.|+.-+|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDM--FDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccch--hHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 467888888888888888899888744 7899999999999999999999887777 6666778888888876
No 331
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.47 E-value=23 Score=35.49 Aligned_cols=149 Identities=15% Similarity=0.086 Sum_probs=101.0
Q ss_pred ccChhhhhcCCCccccCCCCc-chHHHHHhhhhcCCCCchHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHcc
Q 014256 35 SSSLKSAKKPSPSGNSYSRNY-DPVSHISSSLMNEESTPDATSEKELGN----------ECFKQKKFKEAIDCYSRSIAL 103 (428)
Q Consensus 35 ~~~~~~a~~~~~~~y~~g~~~-~Ai~~~~~al~~~p~~~~a~~~~~lg~----------~~~~~g~~~~Ai~~y~~al~~ 103 (428)
.+.+..+...+...-..|.|+ +++..=.+.+..+|....+..+..... -..+..-+++-+.+...++..
T Consensus 25 ~~~~~~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~ 104 (421)
T KOG0529|consen 25 AGQLRSLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKV 104 (421)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444444444445544 577777888888888765533221111 122223466778888999999
Q ss_pred CCc-HHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCCCcHH
Q 014256 104 SPT-AVAYANRAMAYLKLRR--FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK----LKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 104 ~p~-~~~~~nla~~~~~~~~--~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~----~~eA~~~~~~al~l~P~~~~ 176 (428)
+|+ ..+|+.|..++.+.+. +..=++.|+++++.||.+..+|..+-.+...... ..+=+++..+++.-++.|-.
T Consensus 105 npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYs 184 (421)
T KOG0529|consen 105 NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYS 184 (421)
T ss_pred CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhh
Confidence 999 8899999999998874 6888999999999999998887666555544332 45667777888877887777
Q ss_pred HHHHHHH
Q 014256 177 IKKQLAE 183 (428)
Q Consensus 177 ~~~~l~~ 183 (428)
++.....
T Consensus 185 aWhyRs~ 191 (421)
T KOG0529|consen 185 AWHYRSL 191 (421)
T ss_pred HHHHHHH
Confidence 6544333
No 332
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.24 E-value=4 Score=41.16 Aligned_cols=95 Identities=21% Similarity=0.222 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHH-------HccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256 79 ELGNECFKQKKFKEAIDCYSRS-------IALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 149 (428)
Q Consensus 79 ~lg~~~~~~g~~~~Ai~~y~~a-------l~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 149 (428)
.+..++.-.|||..|++..... ....|. ..+++..|.||+.+++|.+|++.|...+-.--.....++....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~ 206 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSY 206 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 4456677789999999987653 111222 4568889999999999999999999887322111111111111
Q ss_pred HHHH-cCCHHHHHHHHHHHHhhCCC
Q 014256 150 ARKE-LGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 150 ~~~~-lg~~~eA~~~~~~al~l~P~ 173 (428)
-+-. .+..++....+.-++.+.|.
T Consensus 207 q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 207 QYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 1111 23445666677777777775
No 333
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=84.32 E-value=7.5 Score=43.56 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=90.5
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchH-HHHHHHHHHHHHh-------cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQ-------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 120 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a-~~~~~lg~~~~~~-------g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~ 120 (428)
..+.|+.|+..|++.-..-|.-.+. .+.+..|..+..+ ..+.+|+..|++.-. .|. +--|...|.+|..+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 565 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRL 565 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHh
Confidence 6678899999999988777764432 2366778777663 258888888887543 344 66799999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 121 RRFQEAEDDCTEALNLDDRYIKAY-------SRRATARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 121 ~~~~eA~~~~~~al~l~p~~~~a~-------~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
|+|++-++++.-|++..|.++..- +|+-.+... +-..|....--++.+.|.....
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 566 GEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred hhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccc
Confidence 999999999999999999987643 333333322 2346667777778888876544
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.14 E-value=7.4 Score=29.59 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhh
Q 014256 110 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA---TARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 110 ~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg---~~~~~lg~~~eA~~~~~~al~l 170 (428)
....|.=++..++.++|+..++++++..++....+..+| .+|...|+|.+++.+...-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677889999999999999999888776555554 6788889999888776555443
No 335
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.86 E-value=5.7 Score=39.63 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=95.9
Q ss_pred hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc----C---Cc--H
Q 014256 39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIAL----S---PT--A 107 (428)
Q Consensus 39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~----~---p~--~ 107 (428)
..++..++..| .-|+++.|+..|.++-....... .+..+.++-.+-.-.|+|..-..+-.++... . +. +
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 34667777777 78999999999999655543222 2334666667777789999888888877664 1 11 4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh--------cCCCCHHHHHHHHH-HHHHcCCHH---HHHHHHHHHHhhCCCcH
Q 014256 108 VAYANRAMAYLKLRRFQEAEDDCTEALN--------LDDRYIKAYSRRAT-ARKELGKLK---ESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 108 ~~~~nla~~~~~~~~~~eA~~~~~~al~--------l~p~~~~a~~~lg~-~~~~lg~~~---eA~~~~~~al~l~P~~~ 175 (428)
.+...-|.+.+.+++|..|...+-.+.. +.|.+..+|..+.. +-....++. ..-..|+..++++|.--
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 5667778889999999999988776643 23556666555432 111111222 22345777788888655
Q ss_pred HH-----HHHHHHHHHHHH
Q 014256 176 EI-----KKQLAEVKSLYE 189 (428)
Q Consensus 176 ~~-----~~~l~~a~~~~~ 189 (428)
+. .+.+..+..+++
T Consensus 310 ~il~~fy~sky~~cl~~L~ 328 (466)
T KOG0686|consen 310 EILFKFYSSKYASCLELLR 328 (466)
T ss_pred HHHHHHhhhhHHHHHHHHH
Confidence 54 234555555544
No 336
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.72 E-value=5.4 Score=41.99 Aligned_cols=69 Identities=14% Similarity=0.027 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256 110 YANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178 (428)
Q Consensus 110 ~~nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~ 178 (428)
.-|-|.-+++.++|..+++.|...+.--|++ .+..-+++.||..+.+.+.|.+++.+|-+.+|.++--+
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 3456778889999999999999999877754 67788899999999999999999999999999887553
No 337
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.08 E-value=7.9 Score=39.27 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 133 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~a 133 (428)
...-|.-++.+|+|.++..+-.=..++.|.+.+|.-+|+|.+..++|++|..++...
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 444566788899999999998888999999999999999999999999998877643
No 338
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.94 E-value=5 Score=30.25 Aligned_cols=39 Identities=10% Similarity=0.000 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc
Q 014256 157 LKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 157 ~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~ 195 (428)
|++|++.+.+++...|+++....-...+.++.+++-.++
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk 67 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLE 67 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677778887776555566666666655444
No 339
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.74 E-value=8 Score=41.46 Aligned_cols=109 Identities=17% Similarity=0.044 Sum_probs=69.0
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~ 129 (428)
..|+|+-|.+.|.++=. .+..-..|-+.|+|.+|...-.++..-......|...|.-+-..|+|.+|++.
T Consensus 777 n~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred cchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 56777777777666422 22334456677888888777666543222256677777777788888777665
Q ss_pred HH------HHHhc-----------------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256 130 CT------EALNL-----------------DDRY-IKAYSRRATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 130 ~~------~al~l-----------------~p~~-~~a~~~lg~~~~~lg~~~eA~~~~~~al 168 (428)
|- +|+.. .|+. ...+.++|.-+...|+.++|...|-++-
T Consensus 847 yiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 847 YITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred eEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 42 22221 1221 3467778888888999998888776553
No 340
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=82.20 E-value=21 Score=35.85 Aligned_cols=126 Identities=13% Similarity=0.041 Sum_probs=85.8
Q ss_pred cCCCCcchHHHHHhhhhc----CCCC---chHHHHHHHHHHHHHhcCHHHHHHHHHHHHc---c--CCc--HHHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMN----EEST---PDATSEKELGNECFKQKKFKEAIDCYSRSIA---L--SPT--AVAYANRAM 115 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~----~p~~---~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~---~--~p~--~~~~~nla~ 115 (428)
..+++.+|.+.-+..+.. +.+. ..+..|+-+...|...|+...-...+...+. + +.. +...+-+-.
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 456666666655554432 1111 1344577777778778875555544444433 2 222 556666778
Q ss_pred HHHHhcCHHHHHHHHHHHHhcC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256 116 AYLKLRRFQEAEDDCTEALNLD--D--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175 (428)
Q Consensus 116 ~~~~~~~~~eA~~~~~~al~l~--p--~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 175 (428)
+|+..+.|+.|.....++.--+ . ..+..+|.+|.+..-.++|..|..+|-+|++..|.+.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 9999999999999888775322 2 2355677889999999999999999999999999843
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.09 E-value=1.9 Score=25.06 Aligned_cols=24 Identities=21% Similarity=-0.010 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 014256 142 KAYSRRATARKELGKLKESIEDSE 165 (428)
Q Consensus 142 ~a~~~lg~~~~~lg~~~eA~~~~~ 165 (428)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467899999999999999998875
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.53 E-value=73 Score=34.15 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=84.8
Q ss_pred chHHHHHhhhhcC-C-CCchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHccC--Cc-----HHHHHHHHHHHHHhcCHHH
Q 014256 56 DPVSHISSSLMNE-E-STPDATSEKELGNECF-KQKKFKEAIDCYSRSIALS--PT-----AVAYANRAMAYLKLRRFQE 125 (428)
Q Consensus 56 ~Ai~~~~~al~~~-p-~~~~a~~~~~lg~~~~-~~g~~~~Ai~~y~~al~~~--p~-----~~~~~nla~~~~~~~~~~e 125 (428)
-|+.+++-++... + ...++...+.+|.+++ ...+++.|..++++++.+. ++ ..+.+-++.++.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4688888887422 1 2346777889999998 5689999999999998876 33 234455688888887766
Q ss_pred HHHHHHHHHhcCCC----CHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhC--CCcHHH
Q 014256 126 AEDDCTEALNLDDR----YIKAYSRRAT--ARKELGKLKESIEDSEFALRLE--PQNQEI 177 (428)
Q Consensus 126 A~~~~~~al~l~p~----~~~a~~~lg~--~~~~lg~~~eA~~~~~~al~l~--P~~~~~ 177 (428)
|...+++++..-.. .....+++-. .....+++..|++.++....+. .+++.+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 99999999977554 2333333332 2222379999999999998876 355544
No 343
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=81.39 E-value=21 Score=37.17 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=61.3
Q ss_pred HhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256 62 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 135 (428)
Q Consensus 62 ~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~ 135 (428)
++-++.+|.+..+ |+.+-.-+-.+ .++++.+.|++.+...|. +.+|......-+..++|+..+..|.+|+.
T Consensus 10 ~~rie~nP~di~s--w~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDS--WSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHH--HHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5667888887776 77777766555 999999999999999999 88999889999999999999999999985
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.22 E-value=9 Score=34.69 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 014256 91 KEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR----YIKAYSRRATARKELGKLKESI 161 (428)
Q Consensus 91 ~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~----~~~a~~~lg~~~~~lg~~~eA~ 161 (428)
+.|...|-++-. .|. +...+.+|..|. ..+.+.|+..+-+++.+.+. ++..+..++.++..+|+++.|.
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666555432 232 667777776665 55778888888888877543 4778888888888888888775
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.94 E-value=6.1 Score=37.81 Aligned_cols=57 Identities=25% Similarity=0.146 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256 111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 167 (428)
Q Consensus 111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 167 (428)
.-.+..|+..|.+.+|++.+.+++.+||-+...+..+-..+..+|+--.|...|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334678899999999999999999999999999999999999999877777666553
No 346
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.47 E-value=12 Score=28.16 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIA 102 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~ 102 (428)
.+...+..+-+.|+|.+|+.+|+++++
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 355677777788888888888766554
No 347
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=80.41 E-value=3 Score=40.14 Aligned_cols=84 Identities=11% Similarity=0.176 Sum_probs=66.8
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCC
Q 014256 61 ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN-RAMAYLKLRRFQEAEDDCTEALNLDD 138 (428)
Q Consensus 61 ~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n-la~~~~~~~~~~eA~~~~~~al~l~p 138 (428)
|.++-..-+++... |...++-..+.|-|.+--..|.+++..+|. ...|.. .+.-+...++++.+...+.++++++|
T Consensus 96 ~~R~tnkff~D~k~--w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 96 LYRSTNKFFNDPKI--WSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eehhhhcCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 33444444555555 667777777888999999999999999998 777765 45667788999999999999999999
Q ss_pred CCHHHHHH
Q 014256 139 RYIKAYSR 146 (428)
Q Consensus 139 ~~~~a~~~ 146 (428)
+++..|+-
T Consensus 174 ~~p~iw~e 181 (435)
T COG5191 174 RSPRIWIE 181 (435)
T ss_pred CCchHHHH
Confidence 99987653
No 348
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.18 E-value=7.8 Score=37.05 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l 136 (428)
+..++..+...|+++.+++.+++.+..+|. ...|..+-..|+..|+...|+..|.+.-.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 667888999999999999999999999998 888999999999999999999988876543
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=79.39 E-value=12 Score=40.76 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=67.6
Q ss_pred HHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 014256 59 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138 (428)
Q Consensus 59 ~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p 138 (428)
..++++.... +..++ ..+......|-.++|...|.++-..+ .+-..|..+|+|.+|.+..+.-=+++
T Consensus 790 RAlR~a~q~~-~e~ea----kvAvLAieLgMlEeA~~lYr~ckR~D-------LlNKlyQs~g~w~eA~eiAE~~DRiH- 856 (1416)
T KOG3617|consen 790 RALRRAQQNG-EEDEA----KVAVLAIELGMLEEALILYRQCKRYD-------LLNKLYQSQGMWSEAFEIAETKDRIH- 856 (1416)
T ss_pred HHHHHHHhCC-cchhh----HHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHhcccHHHHHHHHhhcccee-
Confidence 4556665544 23333 44667778899999999999976543 24456778899999987765432222
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256 139 RYIKAYSRRATARKELGKLKESIEDSEFA 167 (428)
Q Consensus 139 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 167 (428)
--..||+.|.-+...++.+.|+++|+++
T Consensus 857 -Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 857 -LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred -hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 2347899999999999999999999885
No 350
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.29 E-value=16 Score=35.78 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=71.4
Q ss_pred cCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014256 88 KKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNL--DDRYIKAYSRRATARKELGKLKESIEDSE 165 (428)
Q Consensus 88 g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l--~p~~~~a~~~lg~~~~~lg~~~eA~~~~~ 165 (428)
-+|..-...|.-...+.|++++-.|++.+.-+..-.+.++...+..... -..+...+.-+|..+.++|+..+|...|.
T Consensus 310 tDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 310 TDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred CChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 3677777788888888888888888888887777777777766655543 23455677789999999999999999999
Q ss_pred HHHhhCCCcHHHH
Q 014256 166 FALRLEPQNQEIK 178 (428)
Q Consensus 166 ~al~l~P~~~~~~ 178 (428)
+++.+.++..+..
T Consensus 390 rAi~La~~~aer~ 402 (415)
T COG4941 390 RAIALARNAAERA 402 (415)
T ss_pred HHHHhcCChHHHH
Confidence 9999998877653
No 351
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.26 E-value=3.2 Score=44.27 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=48.5
Q ss_pred CCccc-cCCCCcchHHHHHhh------hhcCC-CCc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc-----------
Q 014256 45 SPSGN-SYSRNYDPVSHISSS------LMNEE-STP--DATSEKELGNECFKQKKFKEAIDCYSRSIAL----------- 103 (428)
Q Consensus 45 ~~~~y-~~g~~~~Ai~~~~~a------l~~~p-~~~--~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~----------- 103 (428)
-|..| +..++++|+++|.+- +.+.. .++ .+...-..|.-+...|+++.|+.+|-++-.+
T Consensus 667 agdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~ak 746 (1636)
T KOG3616|consen 667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAK 746 (1636)
T ss_pred hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 34445 566777777776653 22110 000 1111234566777778888887766543211
Q ss_pred -------------CCc--HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256 104 -------------SPT--AVAYANRAMAYLKLRRFQEAEDDCTEA 133 (428)
Q Consensus 104 -------------~p~--~~~~~nla~~~~~~~~~~eA~~~~~~a 133 (428)
+.+ ...|-..|.-|...|+|+-|++.|.++
T Consensus 747 ew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 001 223445667777778888888877765
No 352
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.22 E-value=14 Score=37.00 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=78.9
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc----CH
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR----RF 123 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~----~~ 123 (428)
..-.++-+.+...++..+|+...+ |+.+..++.+.+ ++..=+....++++.+|. ..+|..|=.++.... ..
T Consensus 88 ~~~ld~eL~~~~~~L~~npksY~a--W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVNPKSYGA--WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred HHhhHHHHHHHHHHHHhCchhHHH--HHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence 345667788899999999998777 889999988765 468889999999999997 555544443333322 25
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256 124 QEAEDDCTEALNLDDRYIKAYSRRATARKE 153 (428)
Q Consensus 124 ~eA~~~~~~al~l~p~~~~a~~~lg~~~~~ 153 (428)
.+-++.++++|.-++.|..+|+.+..++..
T Consensus 166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred hhHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 677889999999999999999999987764
No 353
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=77.92 E-value=28 Score=36.50 Aligned_cols=106 Identities=20% Similarity=0.029 Sum_probs=81.9
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHH-HHccCCc-HHHH------HHHHHHHHHhc
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSR-SIALSPT-AVAY------ANRAMAYLKLR 121 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~-al~~~p~-~~~~------~nla~~~~~~~ 121 (428)
..++...+.-.+..++..+|.+..+ ..++|......|....++..+.. +....|+ ..+. +.+|.....++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~--~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (620)
T COG3914 79 PLADSTLAFLAKRIPLSVNPENCPA--VQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLG 156 (620)
T ss_pred ccccchhHHHHHhhhHhcCcccchH--HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhc
Confidence 6677778888999999999998877 55888888878877777766655 7777776 3222 23577777888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 014256 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 157 (428)
Q Consensus 122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~ 157 (428)
+..++.....++..+.|.++.+...+.........+
T Consensus 157 ~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 157 RTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 999999999999999999988777777766666555
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.88 E-value=24 Score=35.12 Aligned_cols=134 Identities=12% Similarity=-0.053 Sum_probs=90.4
Q ss_pred hhhcCCCccc-cCCCCcchHHHHHhhhhc--------------CCCC------------c-hHHHHHHHHHHHHHhcCHH
Q 014256 40 SAKKPSPSGN-SYSRNYDPVSHISSSLMN--------------EEST------------P-DATSEKELGNECFKQKKFK 91 (428)
Q Consensus 40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~--------------~p~~------------~-~a~~~~~lg~~~~~~g~~~ 91 (428)
.++-.++..+ .+|+...|.+..+++|=. ++.. . --.+++.....+.+.|-|.
T Consensus 41 dtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~r 120 (360)
T PF04910_consen 41 DTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWR 120 (360)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHH
Confidence 4444455555 677777777777776432 1110 0 0112566677888899999
Q ss_pred HHHHHHHHHHccCCc--H-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCH------
Q 014256 92 EAIDCYSRSIALSPT--A-VAYANRAMAYLKLRRFQEAEDDCTEALNLDD-----RYIKAYSRRATARKELGKL------ 157 (428)
Q Consensus 92 ~Ai~~y~~al~~~p~--~-~~~~nla~~~~~~~~~~eA~~~~~~al~l~p-----~~~~a~~~lg~~~~~lg~~------ 157 (428)
.|+++..-.+.++|. + .+.+.+-...++.++|+--++.++....... .-+...+..+.++..+++-
T Consensus 121 TAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~ 200 (360)
T PF04910_consen 121 TALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSS 200 (360)
T ss_pred HHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccc
Confidence 999999999999997 2 3344555666777888888888777655211 1345778889999999887
Q ss_pred ---------HHHHHHHHHHHhhCCC
Q 014256 158 ---------KESIEDSEFALRLEPQ 173 (428)
Q Consensus 158 ---------~eA~~~~~~al~l~P~ 173 (428)
+.|...+.+|+...|.
T Consensus 201 ~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 201 AQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cccccccchhHHHHHHHHHHHHhHH
Confidence 6777777777776663
No 355
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.19 E-value=23 Score=35.81 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=65.1
Q ss_pred hcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc-------cCCc-------HHHHHHHHHHHHHhcCHHHHHHHHH
Q 014256 66 MNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA-------LSPT-------AVAYANRAMAYLKLRRFQEAEDDCT 131 (428)
Q Consensus 66 ~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~-------~~p~-------~~~~~nla~~~~~~~~~~eA~~~~~ 131 (428)
..+|+......-.+.=..+....+..+-++.+..... .... .-....+..++.-+|+|..|++..+
T Consensus 67 ~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~ 146 (404)
T PF10255_consen 67 ENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLE 146 (404)
T ss_pred hhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhh
Confidence 3345544443333333444555666666665555321 1111 1223345667888999999998765
Q ss_pred HHHhc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 132 EALNL---------DDRYIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 132 ~al~l---------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
.. .+ -+-+...+|..|.+|..+++|.+|+..|..++-
T Consensus 147 ~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 147 NI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 22 234567799999999999999999999999874
No 356
>PF12854 PPR_1: PPR repeat
Probab=76.89 E-value=6.3 Score=24.50 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=17.8
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 014256 104 SPTAVAYANRAMAYLKLRRFQEAEDDCTE 132 (428)
Q Consensus 104 ~p~~~~~~nla~~~~~~~~~~eA~~~~~~ 132 (428)
.|+...|..+-..|.+.|+.++|.+.+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35555666666666666666666666543
No 357
>PF13041 PPR_2: PPR repeat family
Probab=76.54 E-value=10 Score=25.53 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC--CcHHHHHHH
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALS--PTAVAYANR 113 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~--p~~~~~~nl 113 (428)
.|..+-..|.+.|++++|.+.|++..+.. |+...|..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 36666777778888888888888777654 554444433
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=74.92 E-value=22 Score=36.53 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEA 133 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~a 133 (428)
...|..+|...+.+|+++-|+.+|.++
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 445555555555555555555555544
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.86 E-value=17 Score=33.41 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=32.3
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
+++-+...+|+.....-++-.|.+......+=..+.-.|+|+.|...++-+-++.|++..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 344445555555555555555555555555555555555555555555555555555443
No 360
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=74.42 E-value=16 Score=31.21 Aligned_cols=51 Identities=25% Similarity=0.129 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 157 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~ 157 (428)
......+|...+..|+|.-|.+.++.++..+|++..+...++.++..+|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 444555677777888888888888888888888888888888888877753
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.71 E-value=29 Score=31.48 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=38.7
Q ss_pred cchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHHhcCHHHH
Q 014256 55 YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 55 ~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~~~~~~~~~eA 126 (428)
..|...|-.+-. .|....+...+.+|..|. ..+-++|+..|.+++++.+. +..+..+|.+|.++|+++.|
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555554432 233344444555555444 45666666666666665421 55666666666666666665
No 362
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.64 E-value=51 Score=29.36 Aligned_cols=103 Identities=11% Similarity=0.036 Sum_probs=74.9
Q ss_pred cCCCCcchHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHc-cCCc-HHHHHHHHHHHHHhcCHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIA-LSPT-AVAYANRAMAYLKLRRFQE 125 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~--a~~~~~lg~~~~~~g~~~~Ai~~y~~al~-~~p~-~~~~~nla~~~~~~~~~~e 125 (428)
..|+-..|+..|..+-...+-... -.....-+..++..|-|++-....+..-. -+|- ..+.-.+|.+-++.|+|..
T Consensus 106 ~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~ 185 (221)
T COG4649 106 QKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAK 185 (221)
T ss_pred hcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHH
Confidence 678999999999998776543221 12244567888889999988776655332 2233 5566778999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256 126 AEDDCTEALNLDDRYIKAYSRRATARKE 153 (428)
Q Consensus 126 A~~~~~~al~l~p~~~~a~~~lg~~~~~ 153 (428)
|..+|.+... |..-+...-+++.+...
T Consensus 186 A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 186 AKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 9999999877 66666666777766554
No 363
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.61 E-value=15 Score=34.47 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDS 164 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~------~~~a~~~lg~~~~~lg~~~eA~~~~ 164 (428)
......+|.-|+..|+|+.|+..++.+...... ...+...+..|...+|+.+..+...
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 555556666666666666666666666433221 1334555566666666665555443
No 364
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.20 E-value=91 Score=30.63 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------------
Q 014256 79 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-------------------- 137 (428)
Q Consensus 79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~-------------------- 137 (428)
.+-....+..+..+-|.....+++++|. +.+|..+|.-- .--..+|+..+++|++..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhh
Confidence 4455556666777777777778888887 66666554321 112334555555554321
Q ss_pred ---CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 138 ---DRYI--KAYSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 138 ---p~~~--~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
..++ ...-+++.|-.++|+..+|+..++...+--|
T Consensus 267 ~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 267 LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1222 3445678999999999999999999888777
No 365
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=73.10 E-value=17 Score=27.45 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc
Q 014256 158 KESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 158 ~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~ 195 (428)
.+|++.|..++..+|+...-..-...+.+++.++-.++
T Consensus 30 ~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk 67 (77)
T cd02683 30 QEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIK 67 (77)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677755443334445555666555444
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.65 E-value=90 Score=34.54 Aligned_cols=114 Identities=21% Similarity=0.040 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC--c--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HH
Q 014256 78 KELGNECFKQKKFKEAIDCYSRSIALSP--T--------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-----IK 142 (428)
Q Consensus 78 ~~lg~~~~~~g~~~~Ai~~y~~al~~~p--~--------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~-----~~ 142 (428)
...+......++|.+|..+..++-..-+ + +..-.-+|.+.+..|+++.|+..++.++..-|.+ .-
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 3457777788999999888887755322 1 3455567889999999999999999999887755 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHHHHH
Q 014256 143 AYSRRATARKELGKLKESIEDSEFALRL----EPQNQEIKKQLAEVKSLYEKE 191 (428)
Q Consensus 143 a~~~lg~~~~~lg~~~eA~~~~~~al~l----~P~~~~~~~~l~~a~~~~~~a 191 (428)
++...|.+..-.|++.+|......+.++ +--.-.++..+.++.-+..++
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 6788899999999999999998888877 333344444454444444443
No 367
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=72.49 E-value=20 Score=41.04 Aligned_cols=63 Identities=22% Similarity=0.129 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
+..|..++..+.+++++++|+..+.++.-+. |+....|.+++......++...|+..+.+++.
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 3344444555555555555544444443221 22233444444444444444444444444443
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.83 E-value=15 Score=24.54 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 145 SRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 145 ~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888884
No 369
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=70.94 E-value=8.5 Score=29.74 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=34.7
Q ss_pred hhHHhhhcCCHHHHHHHHHHHHhhccccHHHHHHHHHhccCCCchh
Q 014256 337 LPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFD 382 (428)
Q Consensus 337 l~~if~~~l~~~~l~~il~~l~~~~~~~~~~~~~~L~~l~~~~RF~ 382 (428)
|..+=+..++|++|.-|+..|+-... |+.|+++|..+|...|-+
T Consensus 33 La~~AGv~~dp~VFriildLL~~nVs--P~AI~qmLK~m~s~~~~~ 76 (88)
T PF12926_consen 33 LAQLAGVPMDPEVFRIILDLLRLNVS--PDAIFQMLKSMCSGSRLA 76 (88)
T ss_pred HHHHhCCCcChHHHHHHHHHHHcCCC--HHHHHHHHHHHHcccccC
Confidence 34445567899999999888877665 678999999999888764
No 370
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.12 E-value=48 Score=31.84 Aligned_cols=121 Identities=10% Similarity=-0.009 Sum_probs=72.0
Q ss_pred cccCCCCcchHHHHHhhhhcCCC------CchHHHHHHHHHHHHHhcCHHHH---HHHHHHHHccCCc---HHH-HHHHH
Q 014256 48 GNSYSRNYDPVSHISSSLMNEES------TPDATSEKELGNECFKQKKFKEA---IDCYSRSIALSPT---AVA-YANRA 114 (428)
Q Consensus 48 ~y~~g~~~~Ai~~~~~al~~~p~------~~~a~~~~~lg~~~~~~g~~~~A---i~~y~~al~~~p~---~~~-~~nla 114 (428)
+.+.+++++|+..|.+.+...-. +..-....+++..|...|+|..- +...+.+..-... ... ..-.-
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 33677888888888888876211 11122356788888888876543 3333444433322 111 11112
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHH
Q 014256 115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR------RATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~------lg~~~~~lg~~~eA~~~~~~al 168 (428)
..-.....++.-+..|+.+++.....-..+.+ +..+++..|+|.+|+....-++
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22223346777777888877766554444433 5678888999999988776655
No 371
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.92 E-value=31 Score=32.26 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEAL 134 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~~~~~~eA~~~~~~al 134 (428)
...+|..|+..|+|++|+.+|+.+...... ..+...+..|+..+|+.+..+..+-+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 456777777777777777777777554321 3445566777777777777766665543
No 372
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=69.87 E-value=12 Score=42.70 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CC-c-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCC
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIAL-------SP-T-AVAYANRAMAYLKLRRFQEAEDDCTEALNL--------DDR 139 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~-------~p-~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l--------~p~ 139 (428)
+..++..+...|++++|+..-.++.-+ ++ + ...|.+++...+..++...|...+.+++.+ .|.
T Consensus 976 ~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~ 1055 (1236)
T KOG1839|consen 976 YRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPP 1055 (1236)
T ss_pred HHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCc
Confidence 556666666666666666554444322 21 2 445666666666666666666655555543 233
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 140 YIKAYSRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 140 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
-.....+++.++..+++++.|+.+++.|+.+
T Consensus 1056 ~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1056 TALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666666666553
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.59 E-value=16 Score=32.75 Aligned_cols=45 Identities=24% Similarity=0.191 Sum_probs=22.4
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 014256 94 IDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138 (428)
Q Consensus 94 i~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p 138 (428)
++...+.+...|++..+.+++.++...|+.++|.+...++..+.|
T Consensus 131 ~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333444444445555555555555555555555555555555555
No 374
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=69.35 E-value=66 Score=33.89 Aligned_cols=101 Identities=9% Similarity=-0.060 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DRYIKAYSRRATARKEL 154 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~-p~~~~a~~~lg~~~~~l 154 (428)
|......-...|++....-.|++++--... ...|.+.+......|+..-|...+.++.++. |+-+..+..-+..-...
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 555666667789999999999999876666 7889999999999999999998888888876 55666777777888888
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHH
Q 014256 155 GKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 155 g~~~eA~~~~~~al~l~P~~~~~ 177 (428)
|++..|...++.+..-.|+..++
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhh
Confidence 99999999999999888887765
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.31 E-value=61 Score=35.81 Aligned_cols=117 Identities=13% Similarity=-0.020 Sum_probs=83.3
Q ss_pred cCCCCcchHHHHHhhhhcCCC-------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc------HHHHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEES-------TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMA 116 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~-------~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~nla~~ 116 (428)
...++++|.....++...-+. ...+...-..|.+....|+++.|++..+.++..-|. ..++...|.+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 567788887777776554332 122333346788889999999999999999987654 5678899999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCC----CC--HHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 014256 117 YLKLRRFQEAEDDCTEALNLDD----RY--IKAYSRRATARKELG--KLKESIEDSEF 166 (428)
Q Consensus 117 ~~~~~~~~eA~~~~~~al~l~p----~~--~~a~~~lg~~~~~lg--~~~eA~~~~~~ 166 (428)
..-.|+|++|.....++.+..- -+ .-+.+..+.++...| .+.+....|..
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999888887732 22 234455678888888 33344444433
No 376
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=67.58 E-value=17 Score=27.08 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc
Q 014256 159 ESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 159 eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~ 195 (428)
.|++.|..++..+|+...-......+.+++.++-.+.
T Consensus 33 ~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk 69 (77)
T smart00745 33 KAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIK 69 (77)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566654444445566666766655444
No 377
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.09 E-value=17 Score=26.50 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=12.6
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 014256 163 DSEFALRLEPQNQEIKKQLAEVKSLYEKEV 192 (428)
Q Consensus 163 ~~~~al~l~P~~~~~~~~l~~a~~~~~~a~ 192 (428)
.|..++...++...-.....++..++.++-
T Consensus 34 ~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE 63 (69)
T PF04212_consen 34 YLMQALKSESNPERRQALRQKMKEYLERAE 63 (69)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 333444455433332233344444554443
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.51 E-value=44 Score=33.58 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcc-CCc--HHHHHHHHHH--HHHhcCHHHHHHHHHHHHhcC
Q 014256 75 TSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT--AVAYANRAMA--YLKLRRFQEAEDDCTEALNLD 137 (428)
Q Consensus 75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al~~-~p~--~~~~~nla~~--~~~~~~~~eA~~~~~~al~l~ 137 (428)
......+..++..++|..|...+..+... .+. ...+..++.+ +...-+|.+|.+.++..+..+
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 34556777788888888888888888774 333 2344444444 344567888888888777653
No 379
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=66.27 E-value=1.9 Score=45.37 Aligned_cols=102 Identities=17% Similarity=0.028 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHH--ccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHH--HHhcCCC-CHHH
Q 014256 71 TPDATSEKELGNECFKQKKFKEAIDCYSRSI--ALSPT--AVAYANRAMAYLKLRRFQEAEDDCTE--ALNLDDR-YIKA 143 (428)
Q Consensus 71 ~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al--~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~--al~l~p~-~~~a 143 (428)
......+...+..++..|++..|...+.+.- .+.+. .......|.+.+..|+++.|+..+.. ...+.+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 3334445566777888888888888777665 23444 44555667777788888888887763 1112221 2334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256 144 YSRRATARKELGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 144 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P 172 (428)
+..++.++...|++-+|...+-..-.+-+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 55567777777877777666555444443
No 380
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=66.24 E-value=12 Score=27.33 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIAL 103 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~ 103 (428)
+...|..+-+.|+|++|+.+|..+++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456677777788888888888877653
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.78 E-value=1.5e+02 Score=29.22 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=59.0
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc------------------------CC
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------------------------SP 105 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~------------------------~p 105 (428)
+..+..+-|+.-..++.++|....+.. .++..- ..-..+|...+.++++. |.
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~Ayv--LLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDt 271 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYV--LLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDT 271 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHH--hhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhccc
Confidence 445556667777888888887766533 222211 11123333333333321 11
Q ss_pred cHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCH
Q 014256 106 TAVAY--ANRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGKL 157 (428)
Q Consensus 106 ~~~~~--~nla~~~~~~~~~~eA~~~~~~al~l~p~~--~~a~~~lg~~~~~lg~~ 157 (428)
+...| ..+|+|..++|+..+|++.+....+-.|-. ...+-++-.++..+.-|
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 22233 457999999999999999999888777632 23344444444444333
No 382
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=63.88 E-value=57 Score=32.86 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=35.5
Q ss_pred cCCCCcchHHHHHhhhh--cCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc
Q 014256 50 SYSRNYDPVSHISSSLM--NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT 106 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~--~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~ 106 (428)
..+.|+.|.....+..- ...++..+..++.+|.+..-+++|..|.+++..|+...|.
T Consensus 221 ~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 221 HNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 55566666666555531 1222345556667777777777777777777777777774
No 383
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.24 E-value=15 Score=24.54 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256 111 ANRAMAYLKLRRFQEAEDDCTEALN 135 (428)
Q Consensus 111 ~nla~~~~~~~~~~eA~~~~~~al~ 135 (428)
+++|.+|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888874
No 384
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=63.16 E-value=13 Score=28.06 Aligned_cols=27 Identities=26% Similarity=0.424 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIA 102 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~ 102 (428)
.+...|..+-+.|+|++|+.+|..+|+
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345566777777888888888776654
No 385
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.03 E-value=15 Score=27.82 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIAL 103 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~ 103 (428)
+...|..+-+.|+|++|+.+|..+++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445666667778888888887777653
No 386
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=62.01 E-value=35 Score=25.49 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc
Q 014256 159 ESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 159 eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~ 195 (428)
.|++.|..+++.+|+......-...+.+++.++-.++
T Consensus 31 ~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK 67 (75)
T cd02678 31 HALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLK 67 (75)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566644333334445556666554444
No 387
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.68 E-value=82 Score=32.86 Aligned_cols=80 Identities=14% Similarity=-0.034 Sum_probs=58.3
Q ss_pred hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256 57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEA 133 (428)
Q Consensus 57 Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~a 133 (428)
..+.+.......|+.... ....+..+...|+.+.|+..++.++...-. ...++.+|.++..+.+|..|-.++...
T Consensus 252 ~~~~Ll~~~~~~p~ga~w--ll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALW--LLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHhHHHHHhCCCCccH--HHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444444456665443 567777788888888999999999882222 556889999999999999999998887
Q ss_pred HhcCC
Q 014256 134 LNLDD 138 (428)
Q Consensus 134 l~l~p 138 (428)
.....
T Consensus 330 ~desd 334 (546)
T KOG3783|consen 330 RDESD 334 (546)
T ss_pred Hhhhh
Confidence 76653
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.12 E-value=47 Score=29.58 Aligned_cols=50 Identities=24% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256 123 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173 (428)
Q Consensus 123 ~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 173 (428)
.+..++...+.++..| ++..+.+++.++..+|+.++|.....++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455666777777777 5889999999999999999999999999999993
No 389
>PF13041 PPR_2: PPR repeat family
Probab=60.93 E-value=22 Score=23.84 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256 105 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137 (428)
Q Consensus 105 p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~ 137 (428)
|+...|+.+-..|.+.|++++|.+.|++..+..
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 445567777778888888888888888877553
No 390
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.76 E-value=94 Score=38.19 Aligned_cols=101 Identities=12% Similarity=-0.038 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CC----------C-
Q 014256 73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DR----------Y- 140 (428)
Q Consensus 73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~-p~----------~- 140 (428)
.+..|.+.|.+..+.|.++.|-...-.|.+..+ +.++..+|....+.|+-..|+..+++.+..+ |+ .
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~-~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRL-PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 455688999999999999999998888877663 7788889999999999999999999998654 22 1
Q ss_pred -----HHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCc
Q 014256 141 -----IKAYSRRATARKELGKLK--ESIEDSEFALRLEPQN 174 (428)
Q Consensus 141 -----~~a~~~lg~~~~~lg~~~--eA~~~~~~al~l~P~~ 174 (428)
.++.+..+.-....|+++ .-+..|..+.++.|..
T Consensus 1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 123444445555556542 4567888888888843
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=60.35 E-value=24 Score=20.56 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHH
Q 014256 124 QEAEDDCTEALNLDDRYIKAYS 145 (428)
Q Consensus 124 ~eA~~~~~~al~l~p~~~~a~~ 145 (428)
+.|...|++++...|.++..|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3344444444444444444333
No 392
>PHA02593 62 clamp loader small subunit; Provisional
Probab=59.99 E-value=44 Score=29.80 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=47.6
Q ss_pred CHHHHHHHHh-hcCCCchhHHhhhcCCHHHHHHHHHHHHhhccccHHHHHHHHHhccCCCchhHHH
Q 014256 321 DHALQARLLK-AISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVI 385 (428)
Q Consensus 321 ~~~~~~~yL~-~i~p~~l~~if~~~l~~~~l~~il~~l~~~~~~~~~~~~~~L~~l~~~~RF~~~~ 385 (428)
++...|.||. .|++...+.-....-+......+|..|...|.=+.+-+.++|+-|++-++++..+
T Consensus 94 ~dqmhydYll~sVrkgKRy~~WAKl~ed~e~~~~i~ll~~~Y~vn~~kA~eyl~iltk~~~l~~~l 159 (191)
T PHA02593 94 SDQAHFNYLLASVRKGKRYGKWAKLTEDSEEKLIIKLLAKAYSVNTDDAREYLDILKKKGKLPDVL 159 (191)
T ss_pred CHHHHHHHHHHhccCcccCchhhccCcchHHHHHHHHHHHHhCCCHHHHHHHHHHhccccchHHHH
Confidence 4566787765 5776666655655555555677888888888766677899999999999877544
No 393
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=58.85 E-value=52 Score=24.65 Aligned_cols=37 Identities=16% Similarity=0.038 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc
Q 014256 159 ESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 159 eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~ 195 (428)
.|++.|..+++.+++...-..-...+.+++.++-.++
T Consensus 31 ~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK 67 (75)
T cd02684 31 SALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELK 67 (75)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555433322233445555555554443
No 394
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=58.80 E-value=24 Score=37.80 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=15.4
Q ss_pred ccChhhHHHHHHHHHHhhcC
Q 014256 387 CLSLADKADLRKVWDETFCN 406 (428)
Q Consensus 387 ~ls~~ek~~~~~l~~~l~~~ 406 (428)
-|++.+|+..++|--.|+..
T Consensus 1088 ~l~~a~kq~ye~La~~iFsk 1107 (1189)
T KOG2041|consen 1088 ELDDAEKQEYENLAFRIFSK 1107 (1189)
T ss_pred hCCHHHHHHHHHHHHHHhcc
Confidence 46788899988887777754
No 395
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.65 E-value=2e+02 Score=30.47 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHHHHccC------------Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------
Q 014256 88 KKFKEAIDCYSRSIALS------------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL------------------ 136 (428)
Q Consensus 88 g~~~~Ai~~y~~al~~~------------p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l------------------ 136 (428)
..|++|...|.-+.... |. .......|.++..+|+.+-|.....++|-.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 45777777777666542 22 345666777888888877777776666621
Q ss_pred ---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHH
Q 014256 137 ---DDRY---IKAYSRRATARKELGKLKESIEDSEFALRLEPQ-NQEI 177 (428)
Q Consensus 137 ---~p~~---~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~-~~~~ 177 (428)
+|.| ..++++.-.-+...|.+..|.++.+-.+.++|. ++-+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~ 379 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG 379 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh
Confidence 2222 234555556667788888999888888888887 5544
No 396
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=57.91 E-value=36 Score=25.22 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc
Q 014256 159 ESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 159 eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~ 195 (428)
.|++.|..++...|+...-......+..++.++-.+.
T Consensus 31 ~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk 67 (75)
T cd02656 31 EALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLK 67 (75)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555553333333445555666554444
No 397
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.78 E-value=21 Score=33.11 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 014256 142 KAYSRRATARK---------ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 187 (428)
Q Consensus 142 ~a~~~lg~~~~---------~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~ 187 (428)
+.|--.|.++. ..+....|+..+++++.++|+- -++..++.+...
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~ 223 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERR 223 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHH
Confidence 33444566553 3457789999999999999864 334444444433
No 398
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.98 E-value=93 Score=33.02 Aligned_cols=26 Identities=19% Similarity=0.449 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIA 102 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~ 102 (428)
|..+|....+.|++..|.+|+.++..
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcc
Confidence 66666666666777777666666544
No 399
>PF12854 PPR_1: PPR repeat
Probab=56.98 E-value=23 Score=21.88 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSR 99 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~ 99 (428)
...|..+-..|.+.|+.++|++.+.+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44577899999999999999999875
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.01 E-value=40 Score=32.47 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256 79 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA 133 (428)
Q Consensus 79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~a 133 (428)
..+..|...|.+.+|+.+.++++.++|- ...+..+-..+..+|+--.|...|++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3456677899999999999999999997 777888888899999977777766653
No 401
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=55.60 E-value=1e+02 Score=26.26 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=33.7
Q ss_pred HHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 110 YANRAMAYLK-LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 110 ~~nla~~~~~-~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
|..+|.-++- +|+-++-.+.+....+-...++..+..+|.+|.++|+..+|-+.+.+|-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4555544443 34444444444444444556678888888888888888888877777654
No 402
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=55.34 E-value=2.6e+02 Score=28.90 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=59.7
Q ss_pred HHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256 60 HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136 (428)
Q Consensus 60 ~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l 136 (428)
.++.-++.+|.+... |+.+..-|..+|.+++-.+.|.+...-.|- +.+|...-..-+..++|...+..|.+|+.-
T Consensus 30 rLRerIkdNPtnI~S--~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDNPTNILS--YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcCchhHHH--HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 667778888886655 889999999999999999999999887777 666665544455567888888888888854
No 403
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.70 E-value=77 Score=33.04 Aligned_cols=64 Identities=17% Similarity=-0.003 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc---CC----CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Q 014256 110 YANRAMAYLKLRRFQEAEDDCTEALNL---DD----RYIKAYSRRATARKELGK-LKESIEDSEFALRLEPQ 173 (428)
Q Consensus 110 ~~nla~~~~~~~~~~eA~~~~~~al~l---~p----~~~~a~~~lg~~~~~lg~-~~eA~~~~~~al~l~P~ 173 (428)
+.-+|.++..+|+-..|..+|..+++. .- -.|.|+|-+|..+..+|. ..+|..++.+|-....+
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 555666777777777776666666522 11 125667777777777666 67777777776665533
No 404
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.87 E-value=63 Score=30.88 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=90.2
Q ss_pred CcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH------HHhcCHHHH
Q 014256 54 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY------LKLRRFQEA 126 (428)
Q Consensus 54 ~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~------~~~~~~~eA 126 (428)
++.-...+..++..+|.+.....+...-.-.+....|..-+..-.+.++.|+. ...|..|-.+. ..-..+..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45557788899999999887744333333444446788888888899999886 55555444433 334456666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHH---HHHHHcCC------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256 127 EDDCTEALNLDDRYIKAYSRRA---TARKELGK------LKESIEDSEFALRLEPQNQEIKKQLAEVKS 186 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg---~~~~~lg~------~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 186 (428)
.++-..+|..|+.|..||..+- ......|+ +++-+++.-.++-.+|.+..+++.+.-...
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~ 238 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSS 238 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhc
Confidence 8888889999999999988883 33334454 345566666777788888887665554433
No 405
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=53.54 E-value=91 Score=28.96 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=58.7
Q ss_pred cCCCCcchHHHHHhhhhcCCCCch----------HHHHHHHHHHHHHhcCHH-HH-HHHHHHHHc-cC-Cc---HHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPD----------ATSEKELGNECFKQKKFK-EA-IDCYSRSIA-LS-PT---AVAYAN 112 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~----------a~~~~~lg~~~~~~g~~~-~A-i~~y~~al~-~~-p~---~~~~~n 112 (428)
..|+++.|++...-++..+-..++ +....+.+...+..|.-- -+ ...+..... .+ |+ +..|-.
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~ 174 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYKA 174 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 889999999999999988633321 222345555566666521 11 122222221 12 44 556777
Q ss_pred HHHHHH---------HhcCHHHHHHHHHHHHhcCCCC
Q 014256 113 RAMAYL---------KLRRFQEAEDDCTEALNLDDRY 140 (428)
Q Consensus 113 la~~~~---------~~~~~~eA~~~~~~al~l~p~~ 140 (428)
.|..++ ..++...|+..+.+|+.++|+.
T Consensus 175 ~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 175 AGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 777774 4568899999999999999875
No 406
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=53.18 E-value=2.3e+02 Score=29.82 Aligned_cols=117 Identities=12% Similarity=-0.058 Sum_probs=80.1
Q ss_pred CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH-HHHHHhcCHHHHHHHH
Q 014256 53 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA-MAYLKLRRFQEAEDDC 130 (428)
Q Consensus 53 ~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla-~~~~~~~~~~eA~~~~ 130 (428)
.++..-..|++++........ ..+..+-+.-.+..-...|...|.+|-+..-. ...|..-| +-|...++.+-|...|
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIF 424 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHH
Confidence 344555666666665432221 12445556666666778888888888765433 33443333 3466778889999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 131 ~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
+-.++..++.+..-+....-+..+++-..|...|++++.-
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999888888877777777788888888888888888865
No 407
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.04 E-value=49 Score=37.25 Aligned_cols=104 Identities=11% Similarity=0.118 Sum_probs=56.2
Q ss_pred cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHh---------
Q 014256 50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL--------- 120 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~--------- 120 (428)
..|...+|++.|-++ .+| .. +.+......+.|+|++-+.++..+-+....+..-..+-.+|.+.
T Consensus 1116 ~~~~v~dAieSyika--dDp---s~--y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKA--DDP---SN--YLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred hcCchHHHHHHHHhc--CCc---HH--HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHH
Confidence 455666666666554 222 22 34555666666777777777666655432111111111222222
Q ss_pred -------------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256 121 -------------------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 121 -------------------~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 168 (428)
+.|+.|.-.|. +..-|.+++..+..+|.|+.|++..+++-
T Consensus 1189 i~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1189 IAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 22333332222 33457778888888899988888777764
No 408
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.95 E-value=38 Score=19.58 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 014256 155 GKLKESIEDSEFALRLEPQNQEIKKQLAE 183 (428)
Q Consensus 155 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 183 (428)
|+.+.|...|++++...|.+..++..+.+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788999999999999988887765543
No 409
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.76 E-value=65 Score=24.29 Aligned_cols=15 Identities=0% Similarity=0.007 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhc
Q 014256 181 LAEVKSLYEKEVFQK 195 (428)
Q Consensus 181 l~~a~~~~~~a~~~~ 195 (428)
...+.++++++-.++
T Consensus 54 r~K~~eYl~RAE~Lk 68 (76)
T cd02681 54 QEKSNEYLDRAQALH 68 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555665554443
No 410
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=51.70 E-value=1.1e+02 Score=32.67 Aligned_cols=92 Identities=8% Similarity=-0.019 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC----------Cc-----------------HHHHHHHHHHHHHhcCHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALS----------PT-----------------AVAYANRAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~----------p~-----------------~~~~~nla~~~~~~~~~~eA~~~ 129 (428)
+.--|..+...|..+.|..++.+++..- +. ....+..+.+.+-.+++..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4445666666777767777777776531 10 12344578888889999999998
Q ss_pred HHHHHhcC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256 130 CTEALNLD---D------RYIKAYSRRATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 130 ~~~al~l~---p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 168 (428)
.+.+.... | ..+..++..|..+...|+.+.|...|.+..
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 88777552 2 247789999999999999999999998444
No 411
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=50.00 E-value=80 Score=23.67 Aligned_cols=36 Identities=0% Similarity=-0.087 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc
Q 014256 160 SIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195 (428)
Q Consensus 160 A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~ 195 (428)
|++.|..+++.+++...-..-..++.+++.+|-.+.
T Consensus 32 ~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i~ 67 (75)
T cd02677 32 GVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEEIL 67 (75)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433222233344555555554443
No 412
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=49.99 E-value=28 Score=26.15 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIAL 103 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~ 103 (428)
+...|...-..|+|++|+.+|..+++.
T Consensus 9 lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 9 LVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444555566667777777777766653
No 413
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.65 E-value=68 Score=29.68 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=46.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Q 014256 80 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 141 (428)
Q Consensus 80 lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~ 141 (428)
....+.+.+...+|+.....-++..|. ......+=..+.-.|+|+.|...|+-+-.+.|.+.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344567777888888888888888887 55555555667778888888888888888888764
No 414
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=48.88 E-value=98 Score=25.96 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHhcc-C----CHHHHHHHHhh-cCCCchhHHhhhcCCHHHHHHHHHHHHhhccccHHHHHHHHHhccCCC
Q 014256 306 KSAYEFEVSWRGFA-G----DHALQARLLKA-ISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVP 379 (428)
Q Consensus 306 ~~~~ef~~~w~~~~-~----~~~~~~~yL~~-i~p~~l~~if~~~l~~~~l~~il~~l~~~~~~~~~~~~~~L~~l~~~~ 379 (428)
..-..|...|+.+- . ++..+..||+. +.++..-.|=+-.++++-....+..|...|+.....+-.++..|-..+
T Consensus 6 ~~~~~F~~~F~~~v~~n~~~~d~~K~~~L~~~L~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~~i~~~~~~~l~~l~ 85 (145)
T PF03564_consen 6 SEWPEFIDQFDSLVHENPDLSDIEKLNYLRSCLKGEAKELIRGLPLSEENYEEAWELLEERYGNPRRIIQALLEELRNLP 85 (145)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcchHHHHHHcccccchhhHHHHHHHHHHhCCchHHHHHHHHHHhccc
Confidence 34457888887742 1 46777888876 666666555566788899999999999999976566778888888877
Q ss_pred ch
Q 014256 380 RF 381 (428)
Q Consensus 380 RF 381 (428)
.|
T Consensus 86 ~~ 87 (145)
T PF03564_consen 86 PI 87 (145)
T ss_pred cc
Confidence 73
No 415
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.81 E-value=32 Score=25.94 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=6.0
Q ss_pred hcCHHHHHHHHHHHH
Q 014256 87 QKKFKEAIDCYSRSI 101 (428)
Q Consensus 87 ~g~~~~Ai~~y~~al 101 (428)
.|+|++|+.+|..++
T Consensus 19 ~gny~eA~~lY~~al 33 (75)
T cd02680 19 KGNAEEAIELYTEAV 33 (75)
T ss_pred hhhHHHHHHHHHHHH
Confidence 334444444444333
No 416
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.65 E-value=28 Score=21.57 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHccCCcHHHHHHHH
Q 014256 89 KFKEAIDCYSRSIALSPTAVAYANRA 114 (428)
Q Consensus 89 ~~~~Ai~~y~~al~~~p~~~~~~nla 114 (428)
.++.|...|++.+...|+...|...|
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45666666777666666655554433
No 417
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=48.57 E-value=32 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIA 102 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~ 102 (428)
+...|..+-..|+|++|+.+|..+++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666667778887777766554
No 418
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=47.56 E-value=53 Score=19.61 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256 126 AEDDCTEALNLDDRYIKAYSRRATARKEL 154 (428)
Q Consensus 126 A~~~~~~al~l~p~~~~a~~~lg~~~~~l 154 (428)
.+..+..++..+|.+..+|..|-.+...+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 35567777888888888877776665543
No 419
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=47.43 E-value=1.2e+02 Score=25.83 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256 141 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 189 (428)
Q Consensus 141 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 189 (428)
......++......|+|.-|......++..+|+|.+++.....+...+.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4556678888889999999999999999999999999888777776554
No 420
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=46.94 E-value=31 Score=19.89 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=8.9
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q 014256 80 LGNECFKQKKFKEAIDCYSR 99 (428)
Q Consensus 80 lg~~~~~~g~~~~Ai~~y~~ 99 (428)
+-+.|.+.|++++|...|.+
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 33444444444444444443
No 421
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=46.46 E-value=36 Score=25.35 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIA 102 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~ 102 (428)
+...|...-..|+|++|+.+|..+++
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666667788888777776654
No 422
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.87 E-value=2.9e+02 Score=26.77 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEAL 134 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al 134 (428)
..+|.|+|..|.+.++-+.+.++|.+.+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4445555555555555555555554444
No 423
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.30 E-value=1.7e+02 Score=33.24 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
+..|..+|.+.++.|...+|++.|-+| +++..|...-.+..+.|+|++-+.++..+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 678888888888888888888887655 5666677777777778888877777666543
No 424
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=43.68 E-value=2.5e+02 Score=25.37 Aligned_cols=97 Identities=13% Similarity=-0.045 Sum_probs=60.6
Q ss_pred CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhc-----
Q 014256 52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFK-----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR----- 121 (428)
Q Consensus 52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~-----~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~----- 121 (428)
.+++.|...|..--.. +..+.+.+.+|+-++. .++...|+.+|..+...+. +.+..++|+.+..-.
T Consensus 49 knF~~A~kv~K~nCde---n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~-~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDE---NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI-PQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHhcccc---cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC-HHHHhhhhhhhccCcCCccC
Confidence 4455555555443222 2233446677776654 3578899999999887543 555556666654322
Q ss_pred --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256 122 --RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 154 (428)
Q Consensus 122 --~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l 154 (428)
+...|++.++++..+. +..+.++|...+..-
T Consensus 125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGG 157 (248)
T ss_pred CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhcc
Confidence 3778999999987654 556777777766543
No 425
>PRK11619 lytic murein transglycosylase; Provisional
Probab=43.65 E-value=2.6e+02 Score=30.28 Aligned_cols=118 Identities=11% Similarity=-0.063 Sum_probs=62.0
Q ss_pred CCCcchHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 014256 52 SRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 52 g~~~~Ai~~~~~al~~~p~~~~--a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~ 129 (428)
.+.+.|...+.+......-... ...+..+|......+...+|...+..+.....+....-.+....+..++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 3445566666554333321111 11233344333333224556666665543322222222233344467777776666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
+...-.-........|=+|.++..+|+.++|...|+++..
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6653222234566777788887778888888888888643
No 426
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=42.60 E-value=40 Score=24.97 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIA 102 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~ 102 (428)
+...|...-..|+|++|+.+|..+++
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455556666778877777766654
No 427
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=42.15 E-value=2.5e+02 Score=28.45 Aligned_cols=95 Identities=15% Similarity=0.024 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHH
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRR--------------FQEAEDDCTEAL 134 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~~~~--------------~~eA~~~~~~al 134 (428)
....+|..+|-.|+|+-|...|.-+..-.-+ +.+.-..|.|.+..+. ++.|...|..+-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999998875432 2233345666666653 333444444421
Q ss_pred ----hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256 135 ----NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 135 ----~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 170 (428)
....--..+....+.++...|.+.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111122345555667777888887777766666544
No 428
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=41.89 E-value=60 Score=26.93 Aligned_cols=31 Identities=19% Similarity=0.504 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCcH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPTA 107 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~ 107 (428)
...+|..+...|++++|..+|-+|+.+.|.+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 3468999999999999999999999999883
No 429
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.78 E-value=45 Score=25.02 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIAL 103 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~ 103 (428)
+...|...-..|+|++|..+|..+++.
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555556667888888887777653
No 430
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=41.43 E-value=81 Score=32.44 Aligned_cols=74 Identities=12% Similarity=-0.011 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 014256 79 ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 158 (428)
Q Consensus 79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~ 158 (428)
..+..+.++|-++.|+.. -.++...+.+| +++|+++.|.+.+. .-+++..|-++|......|+++
T Consensus 300 ~i~~fL~~~G~~e~AL~~-------~~D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 300 SIARFLEKKGYPELALQF-------VTDPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHTT-HHHHHHH-------SS-HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHH
T ss_pred HHHHHHHHCCCHHHHHhh-------cCChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHH
Confidence 444455556666665544 33344444443 46778777766433 2236668888888888888888
Q ss_pred HHHHHHHHH
Q 014256 159 ESIEDSEFA 167 (428)
Q Consensus 159 eA~~~~~~a 167 (428)
-|...|.++
T Consensus 365 lAe~c~~k~ 373 (443)
T PF04053_consen 365 LAEECYQKA 373 (443)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 888777765
No 431
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=40.12 E-value=1.2e+02 Score=25.44 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc----------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTE 132 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~nla~~~~~~~~~~eA~~~~~~ 132 (428)
+..+|+..++.+++-.++-+|++|+.+.-+ .....|+|..+..+|+.+-.+.+++-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLql 75 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQL 75 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHH
Confidence 447888999999999999999999875211 12345677777777776666665543
No 432
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=39.89 E-value=63 Score=18.85 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=9.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHH
Q 014256 113 RAMAYLKLRRFQEAEDDCTEA 133 (428)
Q Consensus 113 la~~~~~~~~~~eA~~~~~~a 133 (428)
+-.+|.+.|++++|.+.|.+.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444555554444443
No 433
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=39.36 E-value=2.5e+02 Score=29.99 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=44.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256 115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174 (428)
Q Consensus 115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 174 (428)
.-++...+|..|+..|+++ .-+...+|..+|.+..+.++|..|..-|.+++++...+
T Consensus 564 dqLie~ErYqlaV~mckKc---~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkged 620 (1141)
T KOG1811|consen 564 DQLIEAERYQLAVEMCKKC---GIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGED 620 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhc---CCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCc
Confidence 3345556788888887765 23445689999999999999999999999999987544
No 434
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.21 E-value=1.1e+02 Score=33.26 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=71.0
Q ss_pred cCCCCcchHHHHHhhhhcCCCC--chHHHHHHHHHHHHH--hcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH
Q 014256 50 SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFK--QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 124 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~--~~a~~~~~lg~~~~~--~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~ 124 (428)
..+++.+|.--|..++.+-|.. ..+....+.+.++.. .|+|..++....-++...|. ..+...++.+|.-.++++
T Consensus 65 ~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d 144 (748)
T KOG4151|consen 65 QKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLD 144 (748)
T ss_pred hhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHH
Confidence 3345555555555556665532 223334566666655 57999999999999999998 778888999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHH
Q 014256 125 EAEDDCTEALNLDDRYIKAYS 145 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a~~ 145 (428)
-|+++..-....+|.++.+--
T Consensus 145 ~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 145 LAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHhcCCCCcchHHH
Confidence 999998888889999865544
No 435
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.05 E-value=50 Score=24.88 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256 90 FKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNL 136 (428)
Q Consensus 90 ~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l 136 (428)
.++|+....+|+..| ..|+|++|+.+|..+++.
T Consensus 3 l~kai~Lv~~A~~eD--------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED--------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh--------------HhhhHHHHHHHHHHHHHH
Confidence 345666666655443 456778888888777754
No 436
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.65 E-value=4.1e+02 Score=26.41 Aligned_cols=31 Identities=13% Similarity=-0.020 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256 144 YSRRATARKELGKLKESIEDSEFALRLEPQN 174 (428)
Q Consensus 144 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 174 (428)
|.++...|..-.++-.+...|..++-..|+.
T Consensus 197 Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~ 227 (449)
T COG3014 197 YSNYLDKYEAYQGLLNPYVSYLSGLFYALNG 227 (449)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHhcccCc
Confidence 4555556666666677777788888777766
No 437
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=37.23 E-value=1.1e+02 Score=25.39 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256 146 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184 (428)
Q Consensus 146 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a 184 (428)
.+|..+...|++++|..+|-+|+.+.|.-.+...-++..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~t 106 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQKT 106 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Confidence 478888888999999999999999999877766555543
No 438
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=36.35 E-value=84 Score=18.43 Aligned_cols=23 Identities=22% Similarity=0.001 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Q 014256 110 YANRAMAYLKLRRFQEAEDDCTE 132 (428)
Q Consensus 110 ~~nla~~~~~~~~~~eA~~~~~~ 132 (428)
|..+-.++.+.|+++.|...++.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444444444443
No 439
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.89 E-value=5e+02 Score=27.74 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 165 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~ 165 (428)
+..+...|..+-..+..++|-.+|++.+..+|+ .+++..+.-+.+.|-...|...+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 42 SLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 444555666666666666777777777766666 455556666666665555555554
No 440
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=35.59 E-value=40 Score=26.62 Aligned_cols=33 Identities=24% Similarity=0.133 Sum_probs=28.3
Q ss_pred cChhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhhcc
Q 014256 388 LSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCL 426 (428)
Q Consensus 388 ls~~ek~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~y~~ 426 (428)
+|..+|+.++.++.+|.... .+..+.|.++|--
T Consensus 55 Ct~kQK~~~~kv~~~l~~~~------P~~w~~l~~KyDp 87 (95)
T PF03392_consen 55 CTPKQKENARKVIKFLKKNY------PDEWEELVKKYDP 87 (95)
T ss_dssp S-HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcC------HHHHHHHHHHHCC
Confidence 89999999999999999765 6789999999954
No 441
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=35.57 E-value=2.3e+02 Score=24.59 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=34.6
Q ss_pred CHHHHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHH
Q 014256 307 SAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVA 358 (428)
Q Consensus 307 ~~~ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~l~~il~~l~ 358 (428)
-|.+.-..+++| ++|-.|++||..+-+..-+.=--+. +|.+|.+|+..=.
T Consensus 57 qSa~lnkAY~TL-k~pL~RA~Yilkl~g~e~~sne~st-Dpe~Lmevle~~E 106 (168)
T KOG3192|consen 57 QSAELNKAYDTL-KDPLARARYLLKLKGQEQTSNELST-DPEFLMEVLEYHE 106 (168)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHhCCCCchhhhcc-CHHHHHHHHHHHH
Confidence 356777888888 4577799999887664444333233 8899998887543
No 442
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.46 E-value=3.6e+02 Score=24.84 Aligned_cols=102 Identities=14% Similarity=-0.027 Sum_probs=54.8
Q ss_pred chHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256 56 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALN 135 (428)
Q Consensus 56 ~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~ 135 (428)
.+...|.....+.++.. ..-.|..+.-.++|++|++.+... .+. +........+++..|+...|...+. +..
T Consensus 64 ~~~~~Fa~~f~ip~~~~----~~~~g~W~LD~~~~~~A~~~L~~p-s~~--~~~~~~Il~~L~~~~~~~lAL~y~~-~~~ 135 (226)
T PF13934_consen 64 ELAESFARAFGIPPKYI----KFIQGFWLLDHGDFEEALELLSHP-SLI--PWFPDKILQALLRRGDPKLALRYLR-AVG 135 (226)
T ss_pred cHHHHHHHHhCCCHHHH----HHHHHHHHhChHhHHHHHHHhCCC-CCC--cccHHHHHHHHHHCCChhHHHHHHH-hcC
Confidence 45666666666654322 335566666677777777776322 111 2222234445555677776666544 344
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014256 136 LDDRYIKAYSRRATARKELGKLKESIEDSEF 166 (428)
Q Consensus 136 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 166 (428)
-......+......+ ...|...||....+.
T Consensus 136 p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 136 PPLSSPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 444455444433333 556777777765544
No 443
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=35.36 E-value=4.8e+02 Score=26.26 Aligned_cols=56 Identities=16% Similarity=0.059 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc------HHHHHHHHHHHHH--hcCHHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLK--LRRFQEAEDDCTE 132 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~nla~~~~~--~~~~~eA~~~~~~ 132 (428)
...++..+++.++|..|...|..++...+. ...|..++.+|.. .=++++|.+.++.
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345666889999999999999999987642 3455666655544 5688999998885
No 444
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.23 E-value=1.5e+02 Score=36.67 Aligned_cols=52 Identities=12% Similarity=-0.038 Sum_probs=33.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256 116 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 167 (428)
Q Consensus 116 ~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 167 (428)
.+...|+|..|..+|++++..+|+..+.+.+.-......|.+...+...+-.
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcch
Confidence 3445567777777777777777776666666666666666666665544333
No 445
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.14 E-value=2.9e+02 Score=26.00 Aligned_cols=26 Identities=12% Similarity=-0.167 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014256 139 RYIKAYSRRATARKELGKLKESIEDS 164 (428)
Q Consensus 139 ~~~~a~~~lg~~~~~lg~~~eA~~~~ 164 (428)
.++..+..+|..+.+.|++.+|..+|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 46888999999999999999998887
No 446
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=34.97 E-value=3e+02 Score=27.26 Aligned_cols=47 Identities=15% Similarity=-0.054 Sum_probs=41.2
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014256 120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 166 (428)
Q Consensus 120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 166 (428)
....-+|+-.++.++..+|.|......+..+|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34577888899999999999999999999999999999999888754
No 447
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.96 E-value=2.3e+02 Score=27.99 Aligned_cols=94 Identities=14% Similarity=-0.010 Sum_probs=67.2
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHH
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEA 126 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA 126 (428)
.-+|..-..+|+-.....|.- -+ -.|++...-+..-...++...+....- |. ..++..+|..+.++|+.++|
T Consensus 309 dtDW~~I~aLYdaL~~~apSP-vV--~LNRAVAla~~~Gp~agLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eA 384 (415)
T COG4941 309 DTDWPAIDALYDALEQAAPSP-VV--TLNRAVALAMREGPAAGLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEA 384 (415)
T ss_pred CCChHHHHHHHHHHHHhCCCC-eE--eehHHHHHHHhhhHHhHHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHH
Confidence 345555556666666666543 23 336777777766677777776665543 32 55678899999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHH
Q 014256 127 EDDCTEALNLDDRYIKAYSRRA 148 (428)
Q Consensus 127 ~~~~~~al~l~p~~~~a~~~lg 148 (428)
-..|++++.+.++.....+.+.
T Consensus 385 r~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 385 RAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHHHHHhcCChHHHHHHHH
Confidence 9999999999998877655444
No 448
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=34.64 E-value=3.3e+02 Score=24.11 Aligned_cols=121 Identities=13% Similarity=0.066 Sum_probs=78.6
Q ss_pred CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcC----H
Q 014256 51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRR----F 123 (428)
Q Consensus 51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~----~ 123 (428)
.++-+-|...++..+.....-..-.+..+.-..-...|.|.+|.....+.++.... ..+|..++.|.+-..+ +
T Consensus 70 ~~N~eLa~~tLEnLvt~snTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i 149 (220)
T PF10858_consen 70 KNNSELAFNTLENLVTNSNTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNI 149 (220)
T ss_pred cCcHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccCh
Confidence 35566688888887665433222223445555666789999999999999987654 6678888988887754 4
Q ss_pred HHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256 124 QEAEDDCTEALNLDD----RYIKAYSRRATARKELGKLKESIEDSEFALRLE 171 (428)
Q Consensus 124 ~eA~~~~~~al~l~p----~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 171 (428)
+.-.+.-+..-..+. -.+.|-.-.+..-...|.-.+|.+.++.++.-+
T Consensus 150 ~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~Sn 201 (220)
T PF10858_consen 150 QDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLASN 201 (220)
T ss_pred hhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Confidence 444443333333332 223344444555566788889999998887654
No 449
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.55 E-value=2e+02 Score=30.68 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=33.2
Q ss_pred HHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256 83 ECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNL 136 (428)
Q Consensus 83 ~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l 136 (428)
+..+.|+++.|.....++- +..-|-.+|.+.+..+++..|.+++.++..+
T Consensus 646 lal~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3445566666655433321 1456778888888888888888888887654
No 450
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.50 E-value=6.7e+02 Score=28.26 Aligned_cols=101 Identities=21% Similarity=0.145 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCc---------HHH--HHHHHHHHHH------------hcCHHHH--HHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSPT---------AVA--YANRAMAYLK------------LRRFQEA--EDDCT 131 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---------~~~--~~nla~~~~~------------~~~~~eA--~~~~~ 131 (428)
..+.|..+...|+|.+|+++|..+|-.-|- +.+ ....+.-|+- ....+++ +..|-
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYF 1073 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYF 1073 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHh
Confidence 456788889999999999999998865432 111 2222222211 1124444 33344
Q ss_pred HHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256 132 EALNLDDRYIKAYSRRA-TARKELGKLKESIEDSEFALRLEPQNQEI 177 (428)
Q Consensus 132 ~al~l~p~~~~a~~~lg-~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 177 (428)
.-..+.|-+.-.-.+.| .+..+++++..|-....+.+++.|..+.+
T Consensus 1074 t~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1074 THCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 44456666544444444 57789999999999999999999987665
No 451
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=34.49 E-value=2.4e+02 Score=24.03 Aligned_cols=90 Identities=16% Similarity=-0.038 Sum_probs=54.7
Q ss_pred hhcCCCccc---cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHH-HHHHhcCHHHHHHHHHHHHcc-CCcHHHHHHHHH
Q 014256 41 AKKPSPSGN---SYSRNYDPVSHISSSLMNEESTPDATSEKELGN-ECFKQKKFKEAIDCYSRSIAL-SPTAVAYANRAM 115 (428)
Q Consensus 41 a~~~~~~~y---~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~-~~~~~g~~~~Ai~~y~~al~~-~p~~~~~~nla~ 115 (428)
.+..+|..| .-|+...-+.+|-..=... . +.++|. .+..+|+-++--..+.....- .+++.+...+|.
T Consensus 56 ~LdsIGkiFDis~C~NlKrVi~C~~~~n~~s---e----~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~ 128 (161)
T PF09205_consen 56 TLDSIGKIFDISKCGNLKRVIECYAKRNKLS---E----YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIAN 128 (161)
T ss_dssp HHHHHGGGS-GGG-S-THHHHHHHHHTT------H----HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHH
T ss_pred HHHHHhhhcCchhhcchHHHHHHHHHhcchH---H----HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 345566665 4566777777776642221 1 345554 445566666666667666642 244889999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcC
Q 014256 116 AYLKLRRFQEAEDDCTEALNLD 137 (428)
Q Consensus 116 ~~~~~~~~~eA~~~~~~al~l~ 137 (428)
+|-++|+..+|-+.+.+|.+..
T Consensus 129 Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 129 AYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhcchhhHHHHHHHHHHhc
Confidence 9999999999999999887643
No 452
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.43 E-value=1.2e+02 Score=29.12 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=37.7
Q ss_pred hcCHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256 87 QKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALN 135 (428)
Q Consensus 87 ~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~~~~~~~~~eA~~~~~~al~ 135 (428)
..+.++|+..|++.+++.+. ..+.-..-.+++++++|++-...|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 45788999999999998876 33444556678888888888888888763
No 453
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=34.03 E-value=5.1e+02 Score=27.30 Aligned_cols=78 Identities=13% Similarity=-0.032 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256 89 KFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 168 (428)
Q Consensus 89 ~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 168 (428)
++.-....+++.+....+..++..++.||... ..++-....++.++.+-+++..--.++..|.. ++-+.+...|.+++
T Consensus 81 k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 81 KNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 33333344455555444444455555555544 33333444444444444444333334443333 44444444444433
No 454
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.89 E-value=3e+02 Score=28.22 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccC----Cc--------HHHHHHHHHHHHHhcC----------HHHHHHHHHH
Q 014256 75 TSEKELGNECFKQKKFKEAIDCYSRSIALS----PT--------AVAYANRAMAYLKLRR----------FQEAEDDCTE 132 (428)
Q Consensus 75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~----p~--------~~~~~nla~~~~~~~~----------~~eA~~~~~~ 132 (428)
..+...|.+++....|.+|+.++-.|=+.. +. +..-..+-.||+.+++ ...|...|.+
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 346778888999999999998877664432 21 2233335678888775 2233333333
Q ss_pred HHh--------cC-CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 133 ALN--------LD-DRYI------KAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 133 al~--------l~-p~~~------~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
+-. +. +..+ ..+..-|.+.+..|+-++|.+.++.+..
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 221 11 2222 2344458999999999999999998864
No 455
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.82 E-value=94 Score=29.69 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=44.8
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHcc
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIAL 103 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~--a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~ 103 (428)
++..++++|+..|++++.+.+.-.+ -.+++....++|+.|+|++-.+.|.+.+..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3556889999999999999876432 234778888999999999999999988764
No 456
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=33.38 E-value=45 Score=26.07 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhccccHHHHHHHHHhccCCCchhHHHhccC
Q 014256 310 EFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLS 389 (428)
Q Consensus 310 ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~l~~il~~l~~~~~~~~~~~~~~L~~l~~~~RF~~~~~~ls 389 (428)
+-.+.|+.+ +++.....|..++++.-..|+.. |++..+..|+..+. ++-+..+|..|....|=. ++..|+
T Consensus 17 ~~~~~~~~l--~~~~~a~vl~~l~~~~~~~il~~-l~~~~~a~il~~m~------~dd~~~ll~~L~~~~~~~-il~~l~ 86 (102)
T PF03448_consen 17 ERAQLFRLL--PPEKAAEVLEELDPDTQAEILEA-LSPEEAAEILAEMD------SDDAADLLEELPEEQREK-ILAALD 86 (102)
T ss_dssp HHHHHHHHS---HHHHHHHHCTS-CCCCCHCCCC-S-HHHHHHHHCCS-------HHHHHHHHCCSHHHHHHH-HHHCS-
T ss_pred HHHHHHHhC--CHHHHHHHHHcCCHHHHHHHHHh-CCHHHHHHHHHccC------hHHHHHHHHHCCHHHHHH-HHHcCC
Confidence 334444444 34445555555555555555543 45544444443332 244566666665555433 456667
Q ss_pred hhhHHHHHHHH
Q 014256 390 LADKADLRKVW 400 (428)
Q Consensus 390 ~~ek~~~~~l~ 400 (428)
+.++..|++++
T Consensus 87 ~~~~~~i~~ll 97 (102)
T PF03448_consen 87 EEEREEIKQLL 97 (102)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 457
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.14 E-value=1.8e+02 Score=20.80 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHH--HHHHHHHhcCHHHHHHH
Q 014256 79 ELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYAN--RAMAYLKLRRFQEAEDD 129 (428)
Q Consensus 79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~n--la~~~~~~~~~~eA~~~ 129 (428)
..|..++..|+|=+|-+.++..-...+. -....+ -|..+.+.|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 5677788888888888888888765442 122222 34455556666666554
No 458
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=5e+02 Score=25.64 Aligned_cols=25 Identities=4% Similarity=0.017 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSI 101 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al 101 (428)
+...|.-|.+.||-+.|++.+.+..
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555555555555555444433
No 459
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=32.35 E-value=71 Score=24.32 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHc
Q 014256 79 ELGNECFKQKKFKEAIDCYSRSIA 102 (428)
Q Consensus 79 ~lg~~~~~~g~~~~Ai~~y~~al~ 102 (428)
+.|..+-..|+.++|+.+|++++.
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHH
Confidence 344444444555555555555554
No 460
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=31.70 E-value=1.2e+02 Score=34.73 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=14.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHH
Q 014256 113 RAMAYLKLRRFQEAEDDCTEAL 134 (428)
Q Consensus 113 la~~~~~~~~~~eA~~~~~~al 134 (428)
-|..|...|+.++|+..|..+.
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhc
Confidence 3556666677777776666554
No 461
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=31.68 E-value=32 Score=26.50 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=44.0
Q ss_pred HHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhcccc--HHHHHHHHHhccCCCchhHHHh
Q 014256 310 EFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGE--VDLAIKYLEYLTMVPRFDLVIM 386 (428)
Q Consensus 310 ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~l~~il~~l~~~~~~~--~~~~~~~L~~l~~~~RF~~~~~ 386 (428)
..+++|+.+...-. ++...+-.| +..-+.++...+...|..+...+ -..+-..+..|.+++|.|++-+
T Consensus 13 ~LG~dW~~LA~eLg--------~s~~dI~~i-~~e~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R~DIv~~ 82 (84)
T cd08803 13 HLGLSWTELARELN--------FSVDEINQI-RVENPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTL 82 (84)
T ss_pred HhhccHHHHHHHcC--------CCHHHHHHH-HHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCcHHHHHh
Confidence 46788888753211 222333333 55556677778888887766533 2445678899999999997654
No 462
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=31.10 E-value=1.3e+02 Score=29.81 Aligned_cols=92 Identities=20% Similarity=0.177 Sum_probs=44.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHccCCc------H-HHHHHHHHHHHHhcCHHH--HHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256 81 GNECFKQKKFKEAIDCYSRSIALSPT------A-VAYANRAMAYLKLRRFQE--AEDDCTEALNLDDRYIKAYSRRATAR 151 (428)
Q Consensus 81 g~~~~~~g~~~~Ai~~y~~al~~~p~------~-~~~~nla~~~~~~~~~~e--A~~~~~~al~l~p~~~~a~~~lg~~~ 151 (428)
|..+....+|.-|..+|-++++-... + ...-.+-.|-..++..++ ++-.-+.+++.+..+..+.-..+.++
T Consensus 216 GIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~ 295 (411)
T KOG1463|consen 216 GILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAF 295 (411)
T ss_pred cceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHh
Confidence 44444455666666666666653221 1 112222233333333333 23333445555555566655555555
Q ss_pred HH--cCCHHHHHHHHHHHHhhCC
Q 014256 152 KE--LGKLKESIEDSEFALRLEP 172 (428)
Q Consensus 152 ~~--lg~~~eA~~~~~~al~l~P 172 (428)
.+ +.+|+.|+..|..-+.-+|
T Consensus 296 ~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 296 GNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred cCCcHHHHHHHHHHhHHHHhcCh
Confidence 43 3455666666655555444
No 463
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=30.76 E-value=2.4e+02 Score=22.48 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256 111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155 (428)
Q Consensus 111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg 155 (428)
...|..-+-.|+|..|.+...++-+..+...-.|..-+.+-..+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344555666666666666666665554443334443344444443
No 464
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=30.60 E-value=1.1e+02 Score=18.60 Aligned_cols=10 Identities=20% Similarity=-0.007 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 014256 124 QEAEDDCTEA 133 (428)
Q Consensus 124 ~eA~~~~~~a 133 (428)
++|+.++++|
T Consensus 25 ~~A~~~~~~A 34 (39)
T PF08238_consen 25 EKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 3333333333
No 465
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=30.41 E-value=1.8e+02 Score=28.58 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=60.6
Q ss_pred HHHHhccC-CHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhccc------------cHHH-------HHHHH
Q 014256 313 VSWRGFAG-DHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTG------------EVDL-------AIKYL 372 (428)
Q Consensus 313 ~~w~~~~~-~~~~~~~yL~~i~p~~l~~if~~~l~~~~l~~il~~l~~~~~~------------~~~~-------~~~~L 372 (428)
..|..+.. ++.....||+..+|..+.-+++. +++++-..|+..|...... ++.. +-..|
T Consensus 112 ~~fe~L~~ld~~~l~~lL~~EhpqtiA~iLs~-l~~~~aa~vL~~l~~~~~~~v~~ria~l~~v~~~~~~~i~~~L~~~l 190 (339)
T PRK05686 112 SGFDFLRKMDPQQLANFIRNEHPQTIALILSY-LKPDQAAEILSLLPEELRADVMMRIATLEGVSPEALKEVEEVLEKKL 190 (339)
T ss_pred chHHHHhcCCHHHHHHHHHhcCHHHHHHHHhC-CCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 37777664 78888899999999888888754 5666666666655322211 1221 12223
Q ss_pred Hh-----ccCCCchhHHHhccChhhHHHHHHHHHHhhcC
Q 014256 373 EY-----LTMVPRFDLVIMCLSLADKADLRKVWDETFCN 406 (428)
Q Consensus 373 ~~-----l~~~~RF~~~~~~ls~~ek~~~~~l~~~l~~~ 406 (428)
.. -..++.-..++..|+.-++..-..+++.|...
T Consensus 191 ~~~~~~~~~~~~g~~~~a~Iln~~~~~~~~~il~~L~~~ 229 (339)
T PRK05686 191 SSMANADRTKMGGVKTVAEILNNLDRQTEKTILESLEEE 229 (339)
T ss_pred hhcccccccccCcHHHHHHHHhcCCchHHHHHHHHHHhh
Confidence 22 13455667788888888888888899988853
No 466
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=30.22 E-value=2.5e+02 Score=22.41 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCc
Q 014256 78 KELGNECFKQKKFKEAIDCYSRSIALSPT 106 (428)
Q Consensus 78 ~~lg~~~~~~g~~~~Ai~~y~~al~~~p~ 106 (428)
...|...+-.|+|..|.....++-+..+.
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~ 91 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34455555555555555555555444333
No 467
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=30.19 E-value=98 Score=18.46 Aligned_cols=12 Identities=17% Similarity=0.667 Sum_probs=4.9
Q ss_pred CHHHHHHHHHHH
Q 014256 89 KFKEAIDCYSRS 100 (428)
Q Consensus 89 ~~~~Ai~~y~~a 100 (428)
++.+|+.+|+++
T Consensus 20 d~~~A~~~~~~A 31 (36)
T smart00671 20 DLEKALEYYKKA 31 (36)
T ss_pred CHHHHHHHHHHH
Confidence 334444444433
No 468
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=29.85 E-value=2.1e+02 Score=29.14 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC------c---HHH--------HHHHHHHHHHh-cC-----HHHHHHHHHHH
Q 014256 77 EKELGNECFKQKKFKEAIDCYSRSIALSP------T---AVA--------YANRAMAYLKL-RR-----FQEAEDDCTEA 133 (428)
Q Consensus 77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p------~---~~~--------~~nla~~~~~~-~~-----~~eA~~~~~~a 133 (428)
....|..++..|+|.+|+..|+.+|..-| . ..+ -|-+|+..... +. .++..+.++-+
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELA 286 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELA 286 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 34578899999999999999999887522 1 111 22233322211 11 12222222222
Q ss_pred -----HhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 134 -----LNLDDRYIKAYSRRAT-ARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 134 -----l~l~p~~~~a~~~lg~-~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
.++.|.+...-.+.|. ..++.++|..|....++.|++.|....
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 2344444444444443 345789999999999999999997654
No 469
>COG3084 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.25 E-value=34 Score=25.45 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhccccHHH-HHHHHHhccCCCchhHHHhccC
Q 014256 349 ILIDIVKVVATFFTGEVDL-AIKYLEYLTMVPRFDLVIMCLS 389 (428)
Q Consensus 349 ~l~~il~~l~~~~~~~~~~-~~~~L~~l~~~~RF~~~~~~ls 389 (428)
-+.++|..|+..+.+||++ .+++|+.|++-.-|+=.+.=|+
T Consensus 5 rlnevlellqp~w~k~~dlnl~q~lqkla~eagf~~~l~dlt 46 (88)
T COG3084 5 RLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLT 46 (88)
T ss_pred HHHHHHHHhhHHhccCCCccHHHHHHHHHHHhcccccHHHcc
Confidence 3678888898889999887 8999999999998875544333
No 470
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.04 E-value=2.8e+02 Score=30.99 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=60.9
Q ss_pred cCCCccc---cCCCCcchHHHHHhhhhcCCCC--------chHHHHHHHHHHHHH------------hcCHHHH--HHHH
Q 014256 43 KPSPSGN---SYSRNYDPVSHISSSLMNEEST--------PDATSEKELGNECFK------------QKKFKEA--IDCY 97 (428)
Q Consensus 43 ~~~~~~y---~~g~~~~Ai~~~~~al~~~p~~--------~~a~~~~~lg~~~~~------------~g~~~~A--i~~y 97 (428)
..+..+| ..|++.+|++.|+.++-.-|-. .++..+...+..|.- .+...++ +..|
T Consensus 993 ~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaY 1072 (1202)
T KOG0292|consen 993 KKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAY 1072 (1202)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHH
Confidence 3444445 7899999999999987654321 122223333332321 2234444 2233
Q ss_pred HHHHccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Q 014256 98 SRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 144 (428)
Q Consensus 98 ~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~ 144 (428)
=--..+.|- ..+...--..++++++|..|...+.+.+++.|..+.|-
T Consensus 1073 Ft~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1073 FTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 333344444 22233334578899999999999999999999876553
No 471
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=27.58 E-value=1.1e+02 Score=29.91 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=33.2
Q ss_pred CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc
Q 014256 68 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT 106 (428)
Q Consensus 68 ~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~ 106 (428)
+|....|..++..|....+.|..-+|+..|..|+++.|+
T Consensus 13 d~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 13 DPLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPD 51 (366)
T ss_pred chHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCch
Confidence 344446677888888899999999999999999999999
No 472
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.51 E-value=6.1e+02 Score=25.01 Aligned_cols=95 Identities=17% Similarity=0.063 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHH--hcCCCCHH
Q 014256 74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAEDDCTEAL--NLDDRYIK 142 (428)
Q Consensus 74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---------~~~~~nla~~~~~~~~~~eA~~~~~~al--~l~p~~~~ 142 (428)
+.....++.+|.+.++|..|...+. ++..+.. ...+..+|..|+..++-.+|.....++- ..+..|..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 3346789999999999999987754 3444431 3567889999999999999998888753 33445554
Q ss_pred HHHHH----HHHHHHcCCHHHHHHHHHHHHh
Q 014256 143 AYSRR----ATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 143 a~~~l----g~~~~~lg~~~eA~~~~~~al~ 169 (428)
..... |.++-..++|-+|...|-++..
T Consensus 182 Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333 3334445666666665555443
No 473
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.28 E-value=6.1e+02 Score=25.38 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=29.0
Q ss_pred ccCCCCcchHHHHHhhhhcCCCCchHHHHH--HHHHHHHHhcCHHHHHHHHHHHHcc
Q 014256 49 NSYSRNYDPVSHISSSLMNEESTPDATSEK--ELGNECFKQKKFKEAIDCYSRSIAL 103 (428)
Q Consensus 49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~--~lg~~~~~~g~~~~Ai~~y~~al~~ 103 (428)
|..++|..|...|..+...-|.......+. ..|..+...-+|.+|.++++..+..
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 466677777777777666422222211122 2344444455666777776665543
No 474
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=26.98 E-value=4e+02 Score=25.49 Aligned_cols=34 Identities=9% Similarity=0.211 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 014256 157 LKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190 (428)
Q Consensus 157 ~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 190 (428)
.+.|..++.+++.++|....+...+-.+...|..
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 3678888899999999888877666666666653
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.00 E-value=1.7e+02 Score=26.21 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=15.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHccCCc
Q 014256 81 GNECFKQKKFKEAIDCYSRSIALSPT 106 (428)
Q Consensus 81 g~~~~~~g~~~~Ai~~y~~al~~~p~ 106 (428)
..+|++.|.|++|.+.+.+... +|+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~ 142 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPE 142 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCC
Confidence 4456666666666666666666 554
No 476
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.75 E-value=5.6e+02 Score=24.06 Aligned_cols=35 Identities=17% Similarity=0.011 Sum_probs=19.3
Q ss_pred cCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Q 014256 136 LDDRYIKAYSRRAT-ARKELGKLKESIEDSEFALRL 170 (428)
Q Consensus 136 l~p~~~~a~~~lg~-~~~~lg~~~eA~~~~~~al~l 170 (428)
-.|.....+.-+|. -|..+|+...|...+...++.
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34555566665654 445567777776666555544
No 477
>COG5466 Predicted small metal-binding protein [Function unknown]
Probab=25.00 E-value=1.3e+02 Score=21.41 Aligned_cols=36 Identities=6% Similarity=0.170 Sum_probs=29.5
Q ss_pred cChhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh
Q 014256 388 LSLADKADLRKVWDETFCNESTPIEYAEILDNLRSK 423 (428)
Q Consensus 388 ls~~ek~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~ 423 (428)
..+.+-+.++.++++...+.......++.++.+++.
T Consensus 20 ~a~~~~Ev~~~iv~H~k~~Hg~t~I~ed~in~Ik~r 55 (59)
T COG5466 20 RADSEAEVMRRIVEHAKEAHGETEIREDMINKIKSR 55 (59)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Confidence 367888999999999998876666667888888875
No 478
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.53 E-value=1.3e+02 Score=29.82 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---------HHHHHHHHHHHHHhcCHHHHH
Q 014256 76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAE 127 (428)
Q Consensus 76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---------~~~~~nla~~~~~~~~~~eA~ 127 (428)
.+...|+-.+.+++|+.|...|..|..+.-. ..+++..|.+++.+++++.++
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667899999999999999999998876421 344555666666666655544
No 479
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.07 E-value=1.8e+02 Score=31.81 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=74.4
Q ss_pred cCCCCcchHHHHHhhhhcCCCC-chHHHHHHHHHHH---------HHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Q 014256 50 SYSRNYDPVSHISSSLMNEEST-PDATSEKELGNEC---------FKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK 119 (428)
Q Consensus 50 ~~g~~~~Ai~~~~~al~~~p~~-~~a~~~~~lg~~~---------~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~ 119 (428)
+-|+-+.|+...-.+++.+... ++. +..-|.+| -..+..+.|+.+|+++.+..|....-.|+|..+..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm--~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDM--YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRA 332 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCce--eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHH
Confidence 4467777887777777664332 232 22334333 33456778999999999999985556677777766
Q ss_pred hc-CHHHHHHHHHHHHhcCC------C--CHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256 120 LR-RFQEAEDDCTEALNLDD------R--YIKAYSRRAT---ARKELGKLKESIEDSEFALRLEPQN 174 (428)
Q Consensus 120 ~~-~~~eA~~~~~~al~l~p------~--~~~a~~~lg~---~~~~lg~~~eA~~~~~~al~l~P~~ 174 (428)
.| +|+...+.-.-++.++. . ...-|+..|. +-.-.++|.+|++..+..+++.|-.
T Consensus 333 aG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 333 AGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 66 45555554444444432 1 1112222222 1223578888888888888888754
No 480
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=23.83 E-value=1.5e+02 Score=22.55 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHHH
Q 014256 155 GKLKESIEDSEFAL 168 (428)
Q Consensus 155 g~~~eA~~~~~~al 168 (428)
|..++|+.+|++++
T Consensus 22 g~~e~Al~~Y~~gi 35 (79)
T cd02679 22 GDKEQALAHYRKGL 35 (79)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 481
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=23.82 E-value=1.2e+02 Score=30.57 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256 125 EAEDDCTEALNLDDRYIKAYSRRATARKELG 155 (428)
Q Consensus 125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg 155 (428)
.|+.++++|.. .+.|..|.+.|.++..+|
T Consensus 336 ~Al~yL~kA~d--~ddPetWv~vAEa~I~LG 364 (404)
T PF12753_consen 336 KALEYLKKAQD--EDDPETWVDVAEAMIDLG 364 (404)
T ss_dssp HHHHHHHHHHH--S--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc--cCChhHHHHHHHHHhhhh
Confidence 34444444432 333444445555544444
No 482
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=23.64 E-value=1.6e+02 Score=25.41 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHccCCcHHHHHHH
Q 014256 79 ELGNECFKQK-KFKEAIDCYSRSIALSPTAVAYANR 113 (428)
Q Consensus 79 ~lg~~~~~~g-~~~~Ai~~y~~al~~~p~~~~~~nl 113 (428)
.+|..+...| ++.+|..+|-+||.+.|.+.-....
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~i 130 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSI 130 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHH
No 483
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.36 E-value=2.6e+02 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014256 139 RYIKAYSRRATARKELGKLKESIEDSE 165 (428)
Q Consensus 139 ~~~~a~~~lg~~~~~lg~~~eA~~~~~ 165 (428)
..+..|...|..+...|++.+|...|+
T Consensus 97 ~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 97 KLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334445555555555555555555543
No 484
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.12 E-value=7.1e+02 Score=24.26 Aligned_cols=84 Identities=5% Similarity=0.132 Sum_probs=46.3
Q ss_pred cchHHHHHhhhhc----CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHHhcCH
Q 014256 55 YDPVSHISSSLMN----EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRF 123 (428)
Q Consensus 55 ~~Ai~~~~~al~~----~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~~~~~ 123 (428)
++-++.+++.+.. +.....+.++.++|..|.+.++.+.+.+...+.++..-. ...-..+|..|-.+.-.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 3445555444432 222334455777777777777777777776666554321 12234556666655555
Q ss_pred HHHHHHHHHHHhcCC
Q 014256 124 QEAEDDCTEALNLDD 138 (428)
Q Consensus 124 ~eA~~~~~~al~l~p 138 (428)
++.++..+..++...
T Consensus 172 ~e~lE~~~~~iEkGg 186 (412)
T COG5187 172 EESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHhCC
Confidence 555555555555443
No 485
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=23.04 E-value=1.8e+02 Score=25.54 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=33.0
Q ss_pred HHHHHHHhccCCHHHHHHHHhhcCCCchhHH-hhhcCCHHHHHHHHHHH
Q 014256 310 EFEVSWRGFAGDHALQARLLKAISPNALPQI-FKNALSASILIDIVKVV 357 (428)
Q Consensus 310 ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~i-f~~~l~~~~l~~il~~l 357 (428)
..-..|..| +||-.|+.||..+.+-.+..= ....++|++|.+++..=
T Consensus 52 ~in~AY~~L-~dp~~Ra~YlL~l~g~~~~~~~~~~~~d~~fLme~me~r 99 (166)
T PRK01356 52 ELNNAYSTL-KDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEM 99 (166)
T ss_pred HHHHHHHHh-CCHHHHHHHHHHccCCCCCCccccccCCHHHHHHHHHHH
Confidence 444456656 669999999998877665432 34557899999988763
No 486
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=23.00 E-value=4.2e+02 Score=26.07 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=22.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 169 (428)
Q Consensus 130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 169 (428)
+.+--...|+...++|..|.-.+..|+|..|-.++-....
T Consensus 118 L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~ 157 (432)
T KOG2758|consen 118 LQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRA 157 (432)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 3333445555666666666666666666666554444333
No 487
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.67 E-value=1.9e+02 Score=24.15 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 014256 91 KEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTE 132 (428)
Q Consensus 91 ~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~ 132 (428)
.++.+.|.-.....-. +..|...|..+...|++.+|.+.|..
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4467777777665533 77889999999999999999988764
No 488
>PF06288 DUF1040: Protein of unknown function (DUF1040); InterPro: IPR009383 This family consists of several bacterial YihD proteins of unknown function [].; PDB: 2KO6_A.
Probab=22.35 E-value=30 Score=26.30 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhccccHHH-HHHHHHhccCCCchhHHHhccChhh
Q 014256 348 SILIDIVKVVATFFTGEVDL-AIKYLEYLTMVPRFDLVIMCLSLAD 392 (428)
Q Consensus 348 ~~l~~il~~l~~~~~~~~~~-~~~~L~~l~~~~RF~~~~~~ls~~e 392 (428)
.-+.++|..|+..+.++|++ ..++|..|+.-..|+=-+.-|+...
T Consensus 4 hR~nELLELL~p~Wqk~pDLnL~Q~LqkLa~eag~~~~l~~LtDdv 49 (86)
T PF06288_consen 4 HRLNELLELLQPAWQKEPDLNLMQFLQKLAQEAGFDGPLEDLTDDV 49 (86)
T ss_dssp HHHHHHHHHTHHHHHSSTTS-HHHHHHHHHHHTT-SS-TTS--HHH
T ss_pred chHHHHHHHhhHHHhcCCcccHHHHHHHHHHhcCCCCchhhccHHH
Confidence 34678999999999999887 8999999999999987777676643
No 489
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=21.95 E-value=9.6e+02 Score=25.37 Aligned_cols=118 Identities=16% Similarity=0.016 Sum_probs=74.7
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256 58 VSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136 (428)
Q Consensus 58 i~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l 136 (428)
...+.+.+.... +..+ ++.++.+|... .-++-...+++.++.+-+ ...-..++..|.+ ++-..+...|.+++..
T Consensus 86 eh~c~~~l~~~e-~kma--l~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 86 EHLCTRVLEYGE-SKMA--LLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHhcc-hHHH--HHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 345566666553 2233 77888888887 456677788888887765 4445556666555 6666666666666532
Q ss_pred --------------------CCCCHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256 137 --------------------DDRYIKAYSRR--------------------ATARKELGKLKESIEDSEFALRLEPQNQE 176 (428)
Q Consensus 137 --------------------~p~~~~a~~~l--------------------g~~~~~lg~~~eA~~~~~~al~l~P~~~~ 176 (428)
-+++...++++ -.-|....+|++|+..+...++++..+.-
T Consensus 161 fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 161 FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhh
Confidence 23443332221 12233456899999999999999988877
Q ss_pred HHHH
Q 014256 177 IKKQ 180 (428)
Q Consensus 177 ~~~~ 180 (428)
++.+
T Consensus 241 ar~~ 244 (711)
T COG1747 241 ARKE 244 (711)
T ss_pred HHHH
Confidence 6543
No 490
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=21.59 E-value=3e+02 Score=29.45 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHH
Q 014256 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSR 146 (428)
Q Consensus 107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~-~~a~~~ 146 (428)
..+|...|++.+++++|..|..-|.+++++...+ +.+.+.
T Consensus 587 f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~d 627 (1141)
T KOG1811|consen 587 FGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFD 627 (1141)
T ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHH
Confidence 5678999999999999999999999999997654 344333
No 491
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=21.43 E-value=6.1e+02 Score=25.00 Aligned_cols=42 Identities=17% Similarity=0.018 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHH
Q 014256 90 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 131 (428)
Q Consensus 90 ~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~ 131 (428)
.-+|+-+++.++..+|. ..+...+..+|..+|-...|...|.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44566666666666666 5556666666666666666666664
No 492
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=21.12 E-value=1.1e+02 Score=26.06 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=31.8
Q ss_pred CHHHHHHHHHhccCCHH----HHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHH
Q 014256 307 SAYEFEVSWRGFAGDHA----LQARLLKAISPNALPQIFKNALSASILIDIVKVV 357 (428)
Q Consensus 307 ~~~ef~~~w~~~~~~~~----~~~~yL~~i~p~~l~~if~~~l~~~~l~~il~~l 357 (428)
.-++|.++|++-..+.. ..+..|+.++|+.|-++.+ +.++|..|
T Consensus 65 ~LL~~ir~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~-------~~~~le~l 112 (141)
T PF08625_consen 65 KLLRFIRDWNTNSRTSHVAQRVLNAILKSHPPEELLKIPG-------LKEILEAL 112 (141)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCCHHHHHcccc-------HHHHHHHH
Confidence 56899999999876532 2357788899988877752 55666655
No 493
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=20.72 E-value=1e+02 Score=23.31 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=38.2
Q ss_pred HHhhhcCCHHHHHHHHHHHHhhccccHHHHHHHHHhccCCCchhH
Q 014256 339 QIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDL 383 (428)
Q Consensus 339 ~if~~~l~~~~l~~il~~l~~~~~~~~~~~~~~L~~l~~~~RF~~ 383 (428)
+.++..+.|..|--.|.++......+++.+.+.+..|++.=|+.+
T Consensus 3 ~~L~~QInPHFl~NtLn~I~~l~~~~~~~~~~~i~~ls~~lRy~l 47 (82)
T PF06580_consen 3 KALQAQINPHFLFNTLNSISWLARIDPEKASEMILSLSDLLRYSL 47 (82)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHh
Confidence 457888999999999999988777668899999999998888775
No 494
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.36 E-value=8e+02 Score=23.86 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=57.2
Q ss_pred cCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHHc
Q 014256 88 KKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALN----LD--DRYIKAYSRRATARKEL 154 (428)
Q Consensus 88 g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~~~~~~eA~~~~~~al~----l~--p~~~~a~~~lg~~~~~l 154 (428)
..++.-+...+.+++-... ...-..+...+++.|.|.+|+......+. .| +.-...+..-..+|...
T Consensus 99 dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~i 178 (421)
T COG5159 99 DSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEI 178 (421)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHH
Confidence 4577777777777764322 23445678899999999999988776653 23 33456677777888888
Q ss_pred CCHHHHHHHHHHHHhh
Q 014256 155 GKLKESIEDSEFALRL 170 (428)
Q Consensus 155 g~~~eA~~~~~~al~l 170 (428)
.+..++...+..+-.+
T Consensus 179 rnv~KskaSLTaArt~ 194 (421)
T COG5159 179 RNVSKSKASLTAARTL 194 (421)
T ss_pred HhhhhhhhHHHHHHHH
Confidence 8887777776665443
Done!