BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014260
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 17/177 (9%)
Query: 11 GQSQVPPGFRFHPTEEELLHYYLRKKVAYEKIDLDVIREVDLNKLEPWDIQEKCKIGSTP 70
+ +PPGFRFHPT++EL+ +YL +K A +++ + +I EVDL K +PWD+ E+ G+
Sbjct: 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGA-- 68
Query: 71 QNDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKIIYSGFRRIGLRKTLVFYKGRAPH 130
+WYFF+ +D+KYP +WKATG DK + R +G++K LVFY G+AP
Sbjct: 69 -REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPR 127
Query: 131 GQKSDWIMHEYRLEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGWVVCRVFRKKN 187
G K+DWIMHEYRL ++ D WV+CR++ KKN
Sbjct: 128 GVKTDWIMHEYRLADA--------------GRAAAGAKKGSLRLDDWVLCRLYNKKN 170
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 99/176 (56%), Gaps = 22/176 (12%)
Query: 12 QSQVPPGFRFHPTEEELLHYYLRKKVAYEKIDLDVIREVDLNKLEPWDIQEKCKIGSTPQ 71
Q +PPGFRF+PT+EEL+ YL +K A L +I E+DL K +PW + K G +
Sbjct: 17 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 73
Query: 72 NDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKIIYSGFRRIGLRKTLVFYKGRAPHG 131
+WYFFS +D+KYP +WKATG DKII + +R+G++K LVFY G+AP G
Sbjct: 74 KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 133
Query: 132 QKSDWIMHEYRLEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGWVVCRVFRKKN 187
K++WIMHEYRL E D WV+CR+++K++
Sbjct: 134 TKTNWIMHEYRLIEP-------------------SRRNGSTKLDDWVLCRIYKKQS 170
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 99/176 (56%), Gaps = 22/176 (12%)
Query: 12 QSQVPPGFRFHPTEEELLHYYLRKKVAYEKIDLDVIREVDLNKLEPWDIQEKCKIGSTPQ 71
Q +PPGFRF+PT+EEL+ YL +K A L +I E+DL K +PW + K G +
Sbjct: 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 70
Query: 72 NDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKIIYSGFRRIGLRKTLVFYKGRAPHG 131
+WYFFS +D+KYP +WKATG DKII + +R+G++K LVFY G+AP G
Sbjct: 71 KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 130
Query: 132 QKSDWIMHEYRLEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGWVVCRVFRKKN 187
K++WIMHEYRL E D WV+CR+++K++
Sbjct: 131 TKTNWIMHEYRLIEP-------------------SRRNGSTKLDDWVLCRIYKKQS 167
>pdb|2WAD|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|B Chain B, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|C Chain C, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
Length = 680
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 349 ALDRLVASQLNGQVIDSSKQQLSCFSDSNAVFNFCPGD--HDHLHNSQ 394
A+D + SQLN + K+++ FS NAV NF G D L++SQ
Sbjct: 156 AVDSVPTSQLN--YTEDEKKEIYLFSQLNAVGNFATGTIATDPLNDSQ 201
>pdb|2WAE|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
Length = 680
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 349 ALDRLVASQLNGQVIDSSKQQLSCFSDSNAVFNFCPGD--HDHLHNSQ 394
A+D + SQLN + K+++ FS NAV NF G D L++SQ
Sbjct: 156 AVDSVPTSQLN--YTEDEKKEIYLFSQLNAVGNFATGTIATDPLNDSQ 201
>pdb|2WAF|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain R6)
Length = 682
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 349 ALDRLVASQLNGQVIDSSKQQLSCFSDSNAVFNFCPGD--HDHLHNSQ 394
A+D + SQLN + K+++ FS NAV NF G D L++SQ
Sbjct: 156 AVDSVQTSQLN--YTEDEKKEIYLFSQLNAVGNFATGTIATDPLNDSQ 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,651,398
Number of Sequences: 62578
Number of extensions: 378820
Number of successful extensions: 870
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 859
Number of HSP's gapped (non-prelim): 11
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)