Query 014260
Match_columns 428
No_of_seqs 196 out of 967
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:22:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 6.1E-55 2.1E-59 402.2 15.4 162 9-187 9-170 (174)
2 1ut7_A No apical meristem prot 100.0 5.4E-54 1.8E-58 395.0 15.5 157 10-188 12-168 (171)
3 1ldd_A APC2WHB, anaphase promo 18.7 60 0.0021 25.5 2.3 27 15-42 36-63 (74)
4 1cmb_A Met APO-repressor; DNA- 14.9 1.2E+02 0.004 25.0 3.1 39 22-64 50-88 (104)
5 1r7l_A Phage protein; structur 11.4 99 0.0034 26.1 1.8 19 345-363 9-28 (110)
6 2k2d_A Ring finger and CHY zin 11.3 51 0.0018 26.0 0.0 15 346-360 14-28 (79)
7 3cpr_A Dihydrodipicolinate syn 11.2 86 0.003 30.1 1.6 20 13-33 116-135 (304)
8 3dz1_A Dihydrodipicolinate syn 10.3 1.1E+02 0.0038 29.5 2.0 21 12-34 106-126 (313)
9 3fkr_A L-2-keto-3-deoxyarabona 10.2 1.2E+02 0.0042 29.1 2.3 23 11-33 106-130 (309)
10 1f6k_A N-acetylneuraminate lya 9.9 1.1E+02 0.0037 29.2 1.7 20 13-33 104-123 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=6.1e-55 Score=402.23 Aligned_cols=162 Identities=48% Similarity=1.001 Sum_probs=137.8
Q ss_pred cCCCCCCCCCceecCChHHHHHHHHHHHhccCCCCCCceeeccCCCCCCchhhhhhccCCCCCCeeEEEecCCCCCCCCC
Q 014260 9 INGQSQVPPGFRFHPTEEELLHYYLRKKVAYEKIDLDVIREVDLNKLEPWDIQEKCKIGSTPQNDWYFFSHKDKKYPTGT 88 (428)
Q Consensus 9 ~ng~~~LPpGfRF~PTDeELV~~YL~~Kv~g~pl~~~~I~evDVy~~ePWdL~~~~~~gs~~e~eWYFFs~r~kK~~~G~ 88 (428)
..+++.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+|++.+..+ +++||||+++++||++|.
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~ 85 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGS 85 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----C
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCC
Confidence 45678999999999999999999999999999999999999999999999999987544 679999999999999999
Q ss_pred cccccccCceeeecCCCeEEecCcEEEEEEEEEEeeeCCCCCCCCcCeEEEEEEeCCCCccchhhhhccCCCCCcccCCC
Q 014260 89 RTNRATAAGFWKATGRDKIIYSGFRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRLEESNNQQQDIMINIQPSNSSIMGES 168 (428)
Q Consensus 89 R~nR~tg~G~WK~tG~dk~I~~~g~~IG~KktLvFy~gr~p~g~KT~WiMhEY~L~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (428)
|++|+|++||||++|+++.|..+|++||+||+|+||+|+++++.||+|+||||+|.+..... ..+.
T Consensus 86 R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~----------~~~~---- 151 (174)
T 3ulx_A 86 RPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAA----------AGAK---- 151 (174)
T ss_dssp CSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC---------------------
T ss_pred CceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcc----------cccc----
Confidence 99999999999999999999988999999999999999999999999999999999876410 0000
Q ss_pred CCCCCCCceEEEEEEEecC
Q 014260 169 SESIPEDGWVVCRVFRKKN 187 (428)
Q Consensus 169 ~~~~~~~~wVLCRIykKk~ 187 (428)
......++|||||||+|++
T Consensus 152 ~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 152 KGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp ----CCSSEEEEEEEESCC
T ss_pred cCCCCCCCEEEEEEEEcCC
Confidence 0224578999999999986
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=5.4e-54 Score=395.02 Aligned_cols=157 Identities=49% Similarity=0.990 Sum_probs=132.7
Q ss_pred CCCCCCCCCceecCChHHHHHHHHHHHhccCCCCCCceeeccCCCCCCchhhhhhccCCCCCCeeEEEecCCCCCCCCCc
Q 014260 10 NGQSQVPPGFRFHPTEEELLHYYLRKKVAYEKIDLDVIREVDLNKLEPWDIQEKCKIGSTPQNDWYFFSHKDKKYPTGTR 89 (428)
Q Consensus 10 ng~~~LPpGfRF~PTDeELV~~YL~~Kv~g~pl~~~~I~evDVy~~ePWdL~~~~~~gs~~e~eWYFFs~r~kK~~~G~R 89 (428)
..+..|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+|++....+ +++||||+++++||++|.|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g---~~ewyFFs~r~~k~~~g~R 88 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSR 88 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC---CccEEEEeccccccCCCCc
Confidence 3467899999999999999999999999999999999999999999999999986543 7899999999999999999
Q ss_pred ccccccCceeeecCCCeEEecCcEEEEEEEEEEeeeCCCCCCCCcCeEEEEEEeCCCCccchhhhhccCCCCCcccCCCC
Q 014260 90 TNRATAAGFWKATGRDKIIYSGFRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRLEESNNQQQDIMINIQPSNSSIMGESS 169 (428)
Q Consensus 90 ~nR~tg~G~WK~tG~dk~I~~~g~~IG~KktLvFy~gr~p~g~KT~WiMhEY~L~~~~~~~~~~~~~~~~~~~~~~g~~~ 169 (428)
++|+|++|+||++|+++.|+.++.+||+||+|+||+|+++++.||+|+||||+|..... . .
T Consensus 89 ~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~--~-----------------~ 149 (171)
T 1ut7_A 89 PNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--R-----------------N 149 (171)
T ss_dssp CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------------------
T ss_pred ccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc--c-----------------c
Confidence 99999999999999999999888999999999999999999999999999999998752 0 0
Q ss_pred CCCCCCceEEEEEEEecCc
Q 014260 170 ESIPEDGWVVCRVFRKKNY 188 (428)
Q Consensus 170 ~~~~~~~wVLCRIykKk~~ 188 (428)
.....++|||||||+|+..
T Consensus 150 ~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 150 GSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp -----CCEEEEEEEECC--
T ss_pred CcccCCCEEEEEEEEcCCC
Confidence 1245789999999999874
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=18.65 E-value=60 Score=25.51 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=22.2
Q ss_pred CCCCceecC-ChHHHHHHHHHHHhccCCC
Q 014260 15 VPPGFRFHP-TEEELLHYYLRKKVAYEKI 42 (428)
Q Consensus 15 LPpGfRF~P-TDeELV~~YL~~Kv~g~pl 42 (428)
.|.|+.|.. |++||-. ||.+|+..+.+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 377899998 8888887 69999987754
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=14.90 E-value=1.2e+02 Score=25.01 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHHHhccCCCCCCceeeccCCCCCCchhhhhh
Q 014260 22 HPTEEELLHYYLRKKVAYEKIDLDVIREVDLNKLEPWDIQEKC 64 (428)
Q Consensus 22 ~PTDeELV~~YL~~Kv~g~pl~~~~I~evDVy~~ePWdL~~~~ 64 (428)
|-|.-||++.-...-..|+|+| .+.|+-+..|.++|+..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP----~D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLP----DDADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCC----CGGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCC----CchhhhhcCCccchHHH
Confidence 5688899877666788999998 57788888899988654
No 5
>1r7l_A Phage protein; structural genomics, two layers alpha-beta sandwich, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Bacillus cereus} SCOP: d.277.1.1
Probab=11.41 E-value=99 Score=26.06 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.3
Q ss_pred CchHHHHHHHHhhhcC-CCC
Q 014260 345 NDWVALDRLVASQLNG-QVI 363 (428)
Q Consensus 345 ~dW~aLDrLvAsqLng-~~~ 363 (428)
.+=+.+|||+|+++=| +..
T Consensus 9 m~~Re~drLIAeKvmGwkv~ 28 (110)
T 1r7l_A 9 MKPRDINKLIASKIFGYEIK 28 (110)
T ss_dssp CCHHHHHHHHHHHTTCCCEE
T ss_pred CChHHHHHHHHHHhcceeee
Confidence 3457799999999999 554
No 6
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=11.30 E-value=51 Score=26.05 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhhcC
Q 014260 346 DWVALDRLVASQLNG 360 (428)
Q Consensus 346 dW~aLDrLvAsqLng 360 (428)
-|+.||++||.+--.
T Consensus 14 ~~~~lD~~ia~~pmP 28 (79)
T 2k2d_A 14 YWRQLDDEVAQTPMP 28 (79)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHhCCCC
Confidence 399999999987654
No 7
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=11.16 E-value=86 Score=30.12 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=15.8
Q ss_pred CCCCCCceecCChHHHHHHHH
Q 014260 13 SQVPPGFRFHPTEEELLHYYL 33 (428)
Q Consensus 13 ~~LPpGfRF~PTDeELV~~YL 33 (428)
+.+|| |.|.|++++|+.||-
T Consensus 116 lv~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 116 LVVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEECC-CSSCCCHHHHHHHHH
T ss_pred EECCC-CCCCCCHHHHHHHHH
Confidence 45677 558899999999873
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=10.25 E-value=1.1e+02 Score=29.50 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=15.2
Q ss_pred CCCCCCCceecCChHHHHHHHHH
Q 014260 12 QSQVPPGFRFHPTEEELLHYYLR 34 (428)
Q Consensus 12 ~~~LPpGfRF~PTDeELV~~YL~ 34 (428)
-+.+||- |.||+++|+.||-.
T Consensus 106 vlv~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 106 VMIAPPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp EEECCCT--TCCSHHHHHHHHHH
T ss_pred EEECCCC--CCCCHHHHHHHHHH
Confidence 3456774 56999999998643
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=10.20 E-value=1.2e+02 Score=29.11 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=16.5
Q ss_pred CCCCCCCCce--ecCChHHHHHHHH
Q 014260 11 GQSQVPPGFR--FHPTEEELLHYYL 33 (428)
Q Consensus 11 g~~~LPpGfR--F~PTDeELV~~YL 33 (428)
+-+.+||=|- |.||+++|+.||-
T Consensus 106 avlv~~Pyy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 106 MVMAMPPYHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp EEEECCSCBTTTBCCCHHHHHHHHH
T ss_pred EEEEcCCCCccCCCCCHHHHHHHHH
Confidence 3345677332 8999999999864
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=9.93 E-value=1.1e+02 Score=29.20 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=15.3
Q ss_pred CCCCCCceecCChHHHHHHHH
Q 014260 13 SQVPPGFRFHPTEEELLHYYL 33 (428)
Q Consensus 13 ~~LPpGfRF~PTDeELV~~YL 33 (428)
+.+||- .|.|++++|+.||-
T Consensus 104 lv~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 104 SAVTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp EEECCC-SSCCCHHHHHHHHH
T ss_pred EECCCC-CCCCCHHHHHHHHH
Confidence 345664 48999999999864
Done!