BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014261
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 231 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 260
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 232 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 261
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 231 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 260
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 SPYNAGYAILVVAIVFTIYVSPLNRWVLGL 86
+P N + L++ I+F I+ N+WVLG+
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGM 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,429,968
Number of Sequences: 62578
Number of extensions: 476715
Number of successful extensions: 1108
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 21
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)