Query 014261
Match_columns 428
No_of_seqs 292 out of 1756
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 64.7 3.4 0.00012 30.1 2.1 27 144-170 19-45 (56)
2 3j21_g 50S ribosomal protein L 57.4 5.9 0.0002 28.3 2.2 27 144-170 14-40 (51)
3 2dkt_A Ring finger and CHY zin 52.8 7.5 0.00026 33.7 2.6 46 138-183 77-126 (143)
4 1wfk_A Zinc finger, FYVE domai 39.3 11 0.00039 29.6 1.5 24 144-167 9-34 (88)
5 1joc_A EEA1, early endosomal a 35.3 16 0.00053 30.7 1.8 23 145-167 70-94 (125)
6 1dvp_A HRS, hepatocyte growth 31.2 18 0.00063 33.0 1.7 24 145-168 162-187 (220)
7 1vfy_A Phosphatidylinositol-3- 31.1 14 0.00048 27.9 0.8 22 146-167 13-36 (73)
8 1x4u_A Zinc finger, FYVE domai 28.9 16 0.00055 28.2 0.8 23 145-167 15-39 (84)
9 2yw8_A RUN and FYVE domain-con 27.4 17 0.0006 27.9 0.8 23 145-167 20-44 (82)
10 3zyq_A Hepatocyte growth facto 27.3 22 0.00074 32.8 1.5 23 145-167 165-189 (226)
11 1z2q_A LM5-1; membrane protein 27.1 18 0.00061 28.0 0.8 23 145-167 22-46 (84)
12 3u5e_m 60S ribosomal protein L 24.1 35 0.0012 28.2 2.1 24 144-167 93-118 (128)
13 2pg3_A Queuosine biosynthesis 22.9 19 0.00063 32.7 0.1 18 153-170 190-207 (232)
14 2cr8_A MDM4 protein; ZF-ranbp 22.3 37 0.0013 24.1 1.6 21 146-166 13-33 (53)
15 3t7l_A Zinc finger FYVE domain 20.7 28 0.00096 27.3 0.8 23 145-167 21-45 (90)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=64.71 E-value=3.4 Score=30.06 Aligned_cols=27 Identities=30% Similarity=0.652 Sum_probs=23.6
Q ss_pred eeecccCCcccCCCCCCCccCCceecc
Q 014261 144 VKYCDTCMLYRPPRCSHCSICNNCVER 170 (428)
Q Consensus 144 ~k~C~tC~i~rPpRs~HCs~C~~CV~r 170 (428)
.+.|..|...-|+|+..|+.|+..-+|
T Consensus 19 k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 19 KKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred hhhhccccCcCCcccccccCCCCCCCC
Confidence 568999999999999999999876554
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.43 E-value=5.9 Score=28.30 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.5
Q ss_pred eeecccCCcccCCCCCCCccCCceecc
Q 014261 144 VKYCDTCMLYRPPRCSHCSICNNCVER 170 (428)
Q Consensus 144 ~k~C~tC~i~rPpRs~HCs~C~~CV~r 170 (428)
.+.|..|...-|+++..|+.|+.--+|
T Consensus 14 k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 14 KYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp EEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CccCCCCCCcCCCCceecCCCCCcccc
Confidence 568999999999999999999876444
No 3
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=52.80 E-value=7.5 Score=33.66 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=34.0
Q ss_pred cCcccceeecccCCcccCCCC-CCCccCCceeccC---CccCCCCCceee
Q 014261 138 NGVPVRVKYCDTCMLYRPPRC-SHCSICNNCVERF---DHHCPWVGQCIG 183 (428)
Q Consensus 138 ng~~~~~k~C~tC~i~rPpRs-~HCs~C~~CV~rf---DHHCpWv~nCIG 183 (428)
-|.....-||..|+++.+.+. .||..||-|-..- --||.=-|.|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 345566679999999977654 8899999888762 237777777764
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=39.26 E-value=11 Score=29.60 Aligned_cols=24 Identities=17% Similarity=0.359 Sum_probs=16.9
Q ss_pred eeecccCCcc--cCCCCCCCccCCce
Q 014261 144 VKYCDTCMLY--RPPRCSHCSICNNC 167 (428)
Q Consensus 144 ~k~C~tC~i~--rPpRs~HCs~C~~C 167 (428)
...|..|... --.|-|||+.|++-
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCE
Confidence 3468888752 23578999999874
No 5
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.29 E-value=16 Score=30.70 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=16.3
Q ss_pred eecccCCcc--cCCCCCCCccCCce
Q 014261 145 KYCDTCMLY--RPPRCSHCSICNNC 167 (428)
Q Consensus 145 k~C~tC~i~--rPpRs~HCs~C~~C 167 (428)
..|..|... --.|-|||+.||+-
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCcCcCCccccccccccCCCCCeE
Confidence 468888652 23588999999874
No 6
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.17 E-value=18 Score=32.97 Aligned_cols=24 Identities=25% Similarity=0.654 Sum_probs=17.0
Q ss_pred eecccCCcc--cCCCCCCCccCCcee
Q 014261 145 KYCDTCMLY--RPPRCSHCSICNNCV 168 (428)
Q Consensus 145 k~C~tC~i~--rPpRs~HCs~C~~CV 168 (428)
+.|..|... ---|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 578888642 124889999998753
No 7
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.12 E-value=14 Score=27.86 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=15.6
Q ss_pred ecccCCcc--cCCCCCCCccCCce
Q 014261 146 YCDTCMLY--RPPRCSHCSICNNC 167 (428)
Q Consensus 146 ~C~tC~i~--rPpRs~HCs~C~~C 167 (428)
.|..|... --.|-|||+.||+-
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v 36 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGV 36 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCE
T ss_pred cccCCCCccCCccccccCCCCCEE
Confidence 57777642 22488999999874
No 8
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.93 E-value=16 Score=28.24 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=16.0
Q ss_pred eecccCCcc--cCCCCCCCccCCce
Q 014261 145 KYCDTCMLY--RPPRCSHCSICNNC 167 (428)
Q Consensus 145 k~C~tC~i~--rPpRs~HCs~C~~C 167 (428)
..|..|... --.|-|||+.|++-
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcE
Confidence 357777642 23588999999874
No 9
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.41 E-value=17 Score=27.94 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=16.2
Q ss_pred eecccCCccc--CCCCCCCccCCce
Q 014261 145 KYCDTCMLYR--PPRCSHCSICNNC 167 (428)
Q Consensus 145 k~C~tC~i~r--PpRs~HCs~C~~C 167 (428)
..|..|...= -.|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v 44 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHI 44 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CcccCcCCcccCccccccCCCCCCE
Confidence 4688886421 2488999999874
No 10
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.34 E-value=22 Score=32.76 Aligned_cols=23 Identities=26% Similarity=0.772 Sum_probs=16.0
Q ss_pred eecccCCc-cc-CCCCCCCccCCce
Q 014261 145 KYCDTCML-YR-PPRCSHCSICNNC 167 (428)
Q Consensus 145 k~C~tC~i-~r-PpRs~HCs~C~~C 167 (428)
..|..|.. +- --|-|||+.||+.
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v 189 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQI 189 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCE
Confidence 46888863 11 2378999999875
No 11
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.06 E-value=18 Score=28.02 Aligned_cols=23 Identities=26% Similarity=0.545 Sum_probs=16.4
Q ss_pred eecccCCccc--CCCCCCCccCCce
Q 014261 145 KYCDTCMLYR--PPRCSHCSICNNC 167 (428)
Q Consensus 145 k~C~tC~i~r--PpRs~HCs~C~~C 167 (428)
..|..|...= -.|-|||+.|++-
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCcCcCCccccchhcccccCCCcE
Confidence 4688886522 2488999999874
No 12
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=24.07 E-value=35 Score=28.20 Aligned_cols=24 Identities=29% Similarity=0.827 Sum_probs=21.2
Q ss_pred eeecccCCcccCCCCCCCcc--CCce
Q 014261 144 VKYCDTCMLYRPPRCSHCSI--CNNC 167 (428)
Q Consensus 144 ~k~C~tC~i~rPpRs~HCs~--C~~C 167 (428)
.+.|..|...-|+|+..|+. |+..
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred eEeeccccccCCchhhccchhhCCCc
Confidence 47999999999999999994 8764
No 13
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=22.95 E-value=19 Score=32.72 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=14.4
Q ss_pred ccCCCCCCCccCCceecc
Q 014261 153 YRPPRCSHCSICNNCVER 170 (428)
Q Consensus 153 ~rPpRs~HCs~C~~CV~r 170 (428)
+++.|..||..|..|++|
T Consensus 190 ~~~~~~~~CG~C~~C~~r 207 (232)
T 2pg3_A 190 YNGIKGDGCGQCAACHLR 207 (232)
T ss_dssp TTSCCTTTTSCSHHHHHH
T ss_pred cCCCCCCcCCcCHhHHHH
Confidence 456666899999999877
No 14
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=22.33 E-value=37 Score=24.12 Aligned_cols=21 Identities=24% Similarity=0.629 Sum_probs=16.6
Q ss_pred ecccCCcccCCCCCCCccCCc
Q 014261 146 YCDTCMLYRPPRCSHCSICNN 166 (428)
Q Consensus 146 ~C~tC~i~rPpRs~HCs~C~~ 166 (428)
-|..|+..-||=..||..|-.
T Consensus 13 kC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTCC
T ss_pred ecccccccCCCccchhHHHHH
Confidence 588888888888888877743
No 15
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=20.65 E-value=28 Score=27.29 Aligned_cols=23 Identities=26% Similarity=0.652 Sum_probs=16.0
Q ss_pred eecccCCccc--CCCCCCCccCCce
Q 014261 145 KYCDTCMLYR--PPRCSHCSICNNC 167 (428)
Q Consensus 145 k~C~tC~i~r--PpRs~HCs~C~~C 167 (428)
..|..|...= -.|-|||+.|+.-
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CcCcCCCCcccchhhCccccCCCCE
Confidence 4688886421 2378999999874
Done!