Query 014261
Match_columns 428
No_of_seqs 292 out of 1756
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 08:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014261.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014261hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 76.5 0.62 4.5E-05 32.1 2.1 24 144-167 19-42 (56)
2 d2pg3a1 c.26.2.1 (A:1-230) Que 60.7 0.88 6.4E-05 39.2 0.1 24 145-170 183-206 (230)
3 d2dkta2 g.93.1.1 (A:82-137) RI 52.0 3.6 0.00026 28.3 2.1 23 146-168 4-27 (56)
4 d2adra2 g.37.1.1 (A:131-161) A 49.5 1.5 0.00011 26.2 -0.1 14 159-172 2-15 (31)
5 d2dmda2 g.37.1.1 (A:8-33) Zinc 47.2 2.2 0.00016 24.2 0.3 15 159-173 2-16 (26)
6 d1vfya_ g.50.1.1 (A:) vps27p p 39.6 5.4 0.00039 28.0 1.5 22 147-168 8-31 (67)
7 d2c6aa1 g.41.11.1 (A:290-335) 37.3 6.8 0.0005 25.5 1.6 20 146-165 15-34 (46)
8 d1wfka_ g.50.1.1 (A:) Zinc fin 36.1 6.1 0.00045 29.3 1.4 23 145-167 10-34 (88)
9 d2dkta2 g.93.1.1 (A:82-137) RI 34.8 3 0.00022 28.6 -0.5 31 146-176 19-55 (56)
10 d1joca1 g.50.1.1 (A:1348-1411) 34.1 5.5 0.0004 27.6 0.8 23 146-168 10-34 (64)
11 d1njqa_ g.37.1.3 (A:) SUPERMAN 32.3 6.1 0.00044 24.7 0.7 13 155-167 2-14 (37)
12 d2cr8a1 g.41.11.1 (A:8-48) MDM 29.0 11 0.00083 23.8 1.6 20 146-165 6-25 (41)
13 d1dvpa2 g.50.1.1 (A:149-220) H 25.9 9.2 0.00067 27.1 0.8 23 146-168 15-39 (72)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=76.47 E-value=0.62 Score=32.07 Aligned_cols=24 Identities=29% Similarity=0.737 Sum_probs=21.5
Q ss_pred eeecccCCcccCCCCCCCccCCce
Q 014261 144 VKYCDTCMLYRPPRCSHCSICNNC 167 (428)
Q Consensus 144 ~k~C~tC~i~rPpRs~HCs~C~~C 167 (428)
.+.|..|...-|+|+..|+.|+.=
T Consensus 19 k~ICrkC~AR~p~rAt~CRKCg~~ 42 (56)
T d2ayja1 19 KKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CEEETTTCCEECTTCSSCTTTCCC
T ss_pred hHHHhhccccCCccccccccCCCC
Confidence 578999999999999999988763
No 2
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=60.67 E-value=0.88 Score=39.18 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.3
Q ss_pred eecccCCcccCCCCCCCccCCceecc
Q 014261 145 KYCDTCMLYRPPRCSHCSICNNCVER 170 (428)
Q Consensus 145 k~C~tC~i~rPpRs~HCs~C~~CV~r 170 (428)
..-.+| |+|.|.+||..|..|++|
T Consensus 183 ~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 183 YHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hccCCC--CCCCCCCCCCCCHhHHHH
Confidence 445677 788899999999999988
No 3
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.96 E-value=3.6 Score=28.25 Aligned_cols=23 Identities=35% Similarity=1.011 Sum_probs=9.8
Q ss_pred ecccCCcccCCC-CCCCccCCcee
Q 014261 146 YCDTCMLYRPPR-CSHCSICNNCV 168 (428)
Q Consensus 146 ~C~tC~i~rPpR-s~HCs~C~~CV 168 (428)
||..|+++--.+ ..||..||-|-
T Consensus 4 fC~iC~l~dddk~~yHC~~CgiCR 27 (56)
T d2dkta2 4 YCSICHLFDKDKRQYHCESCGICR 27 (56)
T ss_dssp ECSSSCCEECSSSEEEETTTTEEE
T ss_pred ECCcCCcccCCCCcccCCCCCcee
Confidence 455554442221 24444444443
No 4
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=49.47 E-value=1.5 Score=26.19 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=12.3
Q ss_pred CCCccCCceeccCC
Q 014261 159 SHCSICNNCVERFD 172 (428)
Q Consensus 159 ~HCs~C~~CV~rfD 172 (428)
..|.+|++|-.|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 47999999999887
No 5
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.21 E-value=2.2 Score=24.15 Aligned_cols=15 Identities=33% Similarity=1.030 Sum_probs=12.1
Q ss_pred CCCccCCceeccCCc
Q 014261 159 SHCSICNNCVERFDH 173 (428)
Q Consensus 159 ~HCs~C~~CV~rfDH 173 (428)
|.|..|++|..|-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 679999999888663
No 6
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.58 E-value=5.4 Score=27.96 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=15.3
Q ss_pred cccCCc--ccCCCCCCCccCCcee
Q 014261 147 CDTCML--YRPPRCSHCSICNNCV 168 (428)
Q Consensus 147 C~tC~i--~rPpRs~HCs~C~~CV 168 (428)
|..|.. ---.|-|||+.||+-+
T Consensus 8 C~~C~~~F~~~~rkhhCr~CG~~f 31 (67)
T d1vfya_ 8 CMICSKKFSLLNRKHHCRSCGGVF 31 (67)
T ss_dssp CTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCcccCcccccccccCCCEe
Confidence 777754 2234789999999754
No 7
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.27 E-value=6.8 Score=25.53 Aligned_cols=20 Identities=40% Similarity=0.891 Sum_probs=17.5
Q ss_pred ecccCCcccCCCCCCCccCC
Q 014261 146 YCDTCMLYRPPRCSHCSICN 165 (428)
Q Consensus 146 ~C~tC~i~rPpRs~HCs~C~ 165 (428)
-|..|+..-||=..||..|=
T Consensus 15 kC~~C~~~N~Pl~ryC~rCW 34 (46)
T d2c6aa1 15 KCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp ECTTTCCEECSSCSSCTTTC
T ss_pred cCccccccCCcchhHhHHHH
Confidence 59999999999999988773
No 8
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.12 E-value=6.1 Score=29.30 Aligned_cols=23 Identities=17% Similarity=0.402 Sum_probs=16.4
Q ss_pred eecccCCcc--cCCCCCCCccCCce
Q 014261 145 KYCDTCMLY--RPPRCSHCSICNNC 167 (428)
Q Consensus 145 k~C~tC~i~--rPpRs~HCs~C~~C 167 (428)
..|..|+.. ---|-|||+.|++.
T Consensus 10 s~C~~C~~~Fs~~~rrhhCr~CG~v 34 (88)
T d1wfka_ 10 SRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CcCcccCchhccccccccccccChh
Confidence 468888642 23477999999985
No 9
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.79 E-value=3 Score=28.60 Aligned_cols=31 Identities=32% Similarity=0.805 Sum_probs=22.2
Q ss_pred ecccCCccc---CCCCCCCccCCceecc--C-CccCC
Q 014261 146 YCDTCMLYR---PPRCSHCSICNNCVER--F-DHHCP 176 (428)
Q Consensus 146 ~C~tC~i~r---PpRs~HCs~C~~CV~r--f-DHHCp 176 (428)
.|+.|.+=| ..--.||..|+-|+.. + .|.|.
T Consensus 19 HC~~CgiCRvG~~~~ffHC~~C~~C~~~~l~~~H~Ci 55 (56)
T d2dkta2 19 HCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 55 (56)
T ss_dssp EETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred cCCCCCceeecCCccccccCccccccCcccCCCcccc
Confidence 577776655 4456899999999966 3 47663
No 10
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.10 E-value=5.5 Score=27.65 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=15.7
Q ss_pred ecccCCc--ccCCCCCCCccCCcee
Q 014261 146 YCDTCML--YRPPRCSHCSICNNCV 168 (428)
Q Consensus 146 ~C~tC~i--~rPpRs~HCs~C~~CV 168 (428)
-|..|.. ----|-|||+.||+.+
T Consensus 10 ~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 10 NCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCcCcCCcccCCccccchhhhCCee
Confidence 5777753 1224789999999854
No 11
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.27 E-value=6.1 Score=24.73 Aligned_cols=13 Identities=46% Similarity=1.078 Sum_probs=10.8
Q ss_pred CCCCCCCccCCce
Q 014261 155 PPRCSHCSICNNC 167 (428)
Q Consensus 155 PpRs~HCs~C~~C 167 (428)
|+|.+-|++|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7888889999873
No 12
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.98 E-value=11 Score=23.80 Aligned_cols=20 Identities=25% Similarity=0.665 Sum_probs=16.2
Q ss_pred ecccCCcccCCCCCCCccCC
Q 014261 146 YCDTCMLYRPPRCSHCSICN 165 (428)
Q Consensus 146 ~C~tC~i~rPpRs~HCs~C~ 165 (428)
-|..|+..-||=..||..|=
T Consensus 6 kC~~C~~~N~Pl~ryC~rCW 25 (41)
T d2cr8a1 6 QCTECKKFNSPSKRYCFRCW 25 (41)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecCcccccCCcchhHHHHHH
Confidence 48889888888888887763
No 13
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=25.89 E-value=9.2 Score=27.11 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=16.4
Q ss_pred ecccCCc--ccCCCCCCCccCCcee
Q 014261 146 YCDTCML--YRPPRCSHCSICNNCV 168 (428)
Q Consensus 146 ~C~tC~i--~rPpRs~HCs~C~~CV 168 (428)
.|..|.. ----|-|||+.|++.+
T Consensus 15 ~C~~C~~~F~~~~rrhhCr~CG~~~ 39 (72)
T d1dvpa2 15 VCHRCRVEFTFTNRKHHCRNCGQVF 39 (72)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred ccccCCCcccCccccccccccCCee
Confidence 4877864 2234889999999864
Done!