BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014262
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 22/145 (15%)
Query: 291 GLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG----PGFE---------- 336
G+ NL + L+DN ++ L ++ LT++ L+LS N K G +
Sbjct: 64 GIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 123
Query: 337 ------PLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQV 389
PL LQ LYL NQIT++ L L NL++LS+ N++ + +A+ +L
Sbjct: 124 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTT 183
Query: 390 LAASKNKISTLKGFPHLP-LLEVSI 413
L A NKIS + LP L+EV +
Sbjct: 184 LRADDNKISDISPLASLPNLIEVHL 208
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
NL+ +YL N ++ + + LT ++ L + N PL N L L N+I+
Sbjct: 136 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVND--LTPLANLSKLTTLRADDNKISD 193
Query: 357 LGSLPELPNLEFLSVAQNKLKSIA 380
+ L LPNL + + N++ ++
Sbjct: 194 ISPLASLPNLIEVHLKDNQISDVS 217
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 28/164 (17%)
Query: 278 DLRGHRVRSLIASGLNLQPNLEFVY------LRDNMLSTLEGIEILTRVKVLDLSFNDFK 331
DL G S +G+ ++++ L+DN ++ L ++ LT++ L+LS N K
Sbjct: 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98
Query: 332 G----PGFE----------------PLENCKALQQLYLAGNQITSLGSLPELPNLEFLSV 371
G + PL LQ LYL NQIT++ L L NL++LS+
Sbjct: 99 NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158
Query: 372 AQNKLKSIA-MASQPRLQVLAASKNKISTLKGFPHLP-LLEVSI 413
++ + +A+ +L L A NKIS + LP L+EV +
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHL 202
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
NL+ +YL N ++ + + LT ++ L S + + PL N L L N+I+
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYL--SIGNAQVSDLTPLANLSKLTTLKADDNKISD 187
Query: 357 LGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKIS 398
+ L LPNL + + N++ ++ +A+ L ++ + I+
Sbjct: 188 ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYL 349
+G+ NL+ ++L N +S L ++ LT+++ L ++ N K P L +L+L
Sbjct: 57 AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFL 113
Query: 350 AGNQITSLGSLPELPNLEFLSVAQNKLKSIAM-ASQPRLQVLAASKNKISTLKGFPHL 406
N++ SL L NLE LS+ NKLKSI M +L+VL N+I+ G L
Sbjct: 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRL 171
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNKISTLKGF 403
L++L+L+ NQI+ L L +L LE LSV +N+LK++ L L N++
Sbjct: 65 LKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSL 124
Query: 404 PHLPLLEV 411
HL LE+
Sbjct: 125 IHLKNLEI 132
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 24/99 (24%)
Query: 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
NLE + +R+N L ++ + L++++VLDL GN+IT+
Sbjct: 129 NLEILSIRNNKLKSIVMLGFLSKLEVLDLH------------------------GNEITN 164
Query: 357 LGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKN 395
G L L + ++ + K + + QP L + K+
Sbjct: 165 TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKD 203
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 293 NLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGN 352
+L P+LE + +RDN L+ L E+ + LD+S N F G P L L + N
Sbjct: 254 DLPPSLEALNVRDNYLTDLP--ELPQSLTFLDVSENIFSGLSELP----PNLYYLNASSN 307
Query: 353 QITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNKISTLKGFPH 405
+I SL LP P+LE L+V+ NKL + A PRL+ L AS N ++ + P
Sbjct: 308 EIRSLCDLP--PSLEELNVSNNKLIELP-ALPPRLERLIASFNHLAEVPELPQ 357
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 38/133 (28%)
Query: 284 VRSLIASGLNLQ------PNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEP 337
++SL+ NL+ P LE++ + +N L L ++ + +K++D+ N
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN--------- 163
Query: 338 LENCKALQQLYLAGNQITSLGSLPEL-PNLEFLSVAQNKLKSI-AMASQPRLQVLAASKN 395
SL LP+L P+LEF++ N+L+ + + + P L + A N
Sbjct: 164 ------------------SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205
Query: 396 KISTLKGFPHLPL 408
+LK P LPL
Sbjct: 206 ---SLKKLPDLPL 215
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
NL + L +N ++ ++ ++ LT + L+LS N L +LQQL + NQ+T
Sbjct: 108 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTD 165
Query: 357 LGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKIS 398
L L L LE L ++ NK+ I+ +A L+ L A+ N+IS
Sbjct: 166 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 208
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 276 RLDLRGHRVRSL--IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
L L G++++ + +AS NL + L +N +S L + LT++ L L N
Sbjct: 221 ELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN- 275
Query: 334 GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAA 392
PL AL L L NQ+ + + L NL +L++ N + I+ ++S +LQ L
Sbjct: 276 -ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 334
Query: 393 SKNKISTLKGFPHL 406
NK+S + +L
Sbjct: 335 YNNKVSDVSSLANL 348
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKN 395
PL L +L L GNQ+ +G+L L NL L +A N++ ++A ++ +L L N
Sbjct: 212 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 271
Query: 396 KIST---LKGFPHLPLLEVS 412
+IS L G L LE++
Sbjct: 272 QISNISPLAGLTALTNLELN 291
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFL 369
+++G+E L + ++ S N PL+N L + + NQI + L L NL L
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 112
Query: 370 SVAQNKLKSI----AMASQPRLQVLAASKNKISTLKGFPHLPLLEVS 412
++ N++ I + + RL++ + + + IS L G L L S
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFS 159
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLK- 401
L+ LYL N+IT + L L L+ LS+ N++ I +A +LQ L SKN IS L+
Sbjct: 133 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 192
Query: 402 --GFPHLPLLEV 411
G +L +LE+
Sbjct: 193 LAGLKNLDVLEL 204
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 125 NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 181
Query: 349 LAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNKISTL 400
L+ N I+ L +L L NL+ L + + + + Q L V KN +L
Sbjct: 182 LSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLK- 401
L+ LYL N+IT + L L L+ LS+ N++ I +A +LQ L SKN IS L+
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 195
Query: 402 --GFPHLPLLEV 411
G +L +LE+
Sbjct: 196 LAGLKNLDVLEL 207
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 128 NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184
Query: 349 LAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNKISTL 400
L+ N I+ L +L L NL+ L + + + + Q L V KN +L
Sbjct: 185 LSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 25/116 (21%)
Query: 308 LSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQ-------------- 353
+ +++GI+ L V L L+ N K +PL N K L L+L N+
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGN--KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK 115
Query: 354 --------ITSLGSLPELPNLEFLSVAQNKLKSIAMASQ-PRLQVLAASKNKISTL 400
I+ + L LP LE L + NK+ I + S+ +L L+ N+IS +
Sbjct: 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 171
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKIS---T 399
L+ LYL N+IT + L L L+ LS+ N+++ I +A +LQ L SKN IS
Sbjct: 134 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQNLYLSKNHISDLRA 193
Query: 400 LKGFPHLPLLEV 411
L+G +L +LE+
Sbjct: 194 LRGLKNLDVLEL 205
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 126 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQNLY 182
Query: 349 LAGNQITSLGSLPELPNLEFLSV 371
L+ N I+ L +L L NL+ L +
Sbjct: 183 LSKNHISDLRALRGLKNLDVLEL 205
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLK- 401
L+ LYL N+IT + L L L+ LS+ N++ I +A +LQ L SKN IS L+
Sbjct: 131 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 190
Query: 402 --GFPHLPLLEV 411
G +L +LE+
Sbjct: 191 LAGLKNLDVLEL 202
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 123 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 179
Query: 349 LAGNQITSLGSLPELPNLEFLSV 371
L+ N I+ L +L L NL+ L +
Sbjct: 180 LSKNHISDLRALAGLKNLDVLEL 202
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLK- 401
L+ LYL N+IT + L L L+ LS+ N++ I +A +LQ L SKN IS L+
Sbjct: 131 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQNLYLSKNHISDLRA 190
Query: 402 --GFPHLPLLEV 411
G +L +LE+
Sbjct: 191 LCGLKNLDVLEL 202
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 123 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQNLY 179
Query: 349 LAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKN 395
L+ N I+ L +L L NL+ L + + + + Q L V KN
Sbjct: 180 LSKNHISDLRALCGLKNLDVLELFSQEALNKPINHQSNLVVPNTVKN 226
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 25/116 (21%)
Query: 308 LSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQ-------------- 353
+ +++GI+ L V L L+ N K +PL N K L L+L N+
Sbjct: 53 IKSVQGIQYLPNVTKLFLNGN--KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK 110
Query: 354 --------ITSLGSLPELPNLEFLSVAQNKLKSIAMASQ-PRLQVLAASKNKISTL 400
I+ + L LP LE L + NK+ I + S+ +L L+ N+IS +
Sbjct: 111 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 166
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLK- 401
L+ LYL N+IT + L L L+ LS+ N++ I +A +LQ L SKN IS L+
Sbjct: 154 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 213
Query: 402 --GFPHLPLLEV 411
G +L +LE+
Sbjct: 214 LAGLKNLDVLEL 225
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 146 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 202
Query: 349 LAGNQITSLGSLPELPNLEFLSV 371
L+ N I+ L +L L NL+ L +
Sbjct: 203 LSKNHISDLRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLK- 401
L+ LYL N+IT + L L L+ LS+ N++ I +A +LQ L SKN IS L+
Sbjct: 154 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 213
Query: 402 --GFPHLPLLEV 411
G +L +LE+
Sbjct: 214 LAGLKNLDVLEL 225
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 146 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 202
Query: 349 LAGNQITSLGSLPELPNLEFLSV 371
L+ N I+ L +L L NL+ L +
Sbjct: 203 LSKNHISDLRALAGLKNLDVLEL 225
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLK- 401
L+ LYL N+IT + L L L+ LS+ N++ I +A +LQ L SKN IS L+
Sbjct: 134 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 193
Query: 402 --GFPHLPLLEV 411
G +L +LE+
Sbjct: 194 LAGLKNLDVLEL 205
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 126 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 182
Query: 349 LAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKN 395
L+ N I+ L +L L NL+ L + + + + Q L V KN
Sbjct: 183 LSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 229
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 25/116 (21%)
Query: 308 LSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQ-------------- 353
+ +++GI+ L V L L+ N K +PL N K L L+L N+
Sbjct: 56 IKSVQGIQYLPNVTKLFLNGN--KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK 113
Query: 354 --------ITSLGSLPELPNLEFLSVAQNKLKSIAMASQ-PRLQVLAASKNKISTL 400
I+ + L LP LE L + NK+ I + S+ +L L+ N+IS +
Sbjct: 114 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 169
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLK- 401
L+ LYL N+IT + L L L+ LS+ N++ I +A +LQ L SKN IS L+
Sbjct: 154 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 213
Query: 402 --GFPHLPLLEV 411
G +L +LE+
Sbjct: 214 LAGLKNLDVLEL 225
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 146 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 202
Query: 349 LAGNQITSLGSLPELPNLEFLSV 371
L+ N I+ L +L L NL+ L +
Sbjct: 203 LSKNHISDLRALAGLKNLDVLEL 225
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLK- 401
L+ LYL N+IT + L L L+ LS+ N++ I +A +LQ L SKN IS L+
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 195
Query: 402 --GFPHLPLLEV 411
G +L +LE+
Sbjct: 196 LAGLKNLDVLEL 207
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 128 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184
Query: 349 LAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKN 395
L+ N I+ L +L L NL+ L + + + + Q L V KN
Sbjct: 185 LSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 25/116 (21%)
Query: 308 LSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQ-------------- 353
+ +++GI+ L V L L+ N K +PL N K L L+L N+
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGN--KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK 115
Query: 354 --------ITSLGSLPELPNLEFLSVAQNKLKSIAMASQ-PRLQVLAASKNKISTL 400
I+ + L LP LE L + NK+ I + S+ +L L+ N+IS +
Sbjct: 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 171
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 344 LQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLK- 401
L+ LYL N+IT + L L L+ LS+ N++ I +A +LQ L SKN IS L+
Sbjct: 156 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 215
Query: 402 --GFPHLPLLEV 411
G +L +LE+
Sbjct: 216 LAGLKNLDVLEL 227
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 290 SGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD-LSFNDFKGPGFEPLENCKALQQLY 348
+GL P LE +YL +N ++ I +L+R+ LD LS D + PL LQ LY
Sbjct: 148 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 204
Query: 349 LAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKN 395
L+ N I+ L +L L NL+ L + + + + Q L V KN
Sbjct: 205 LSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 251
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 291 GLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLA 350
G+ PNL + L +N ++ + I+ L V L L+ N K +PL N K L L+L
Sbjct: 61 GIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGN--KLTDIKPLANLKNLGWLFLD 118
Query: 351 GNQ----------------------ITSLGSLPELPNLEFLSVAQNKLKSIAMASQ-PRL 387
N+ I+ + L LP LE L + NK+ I + S+ +L
Sbjct: 119 ENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL 178
Query: 388 QVLAASKNKISTL 400
L+ N+IS +
Sbjct: 179 DTLSLEDNQISDI 191
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 323 LDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPE-LPNLEFLSVAQNKLKSIAM 381
+DLS+N+ + + P + L++LY++ N++ +L + +P L+ L ++ N L +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE- 317
Query: 382 ASQP---RLQVLAASKNKISTLKGFPHLPL 408
+QP RL+ L N I TLK H L
Sbjct: 318 RNQPQFDRLENLYLDHNSIVTLKLSTHHTL 347
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 347 LYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI--AMASQPRLQVLAASKNKISTLKGFP 404
L+LA +T L L +L + L ++ N+L+++ A+A+ L+VL AS N + + G
Sbjct: 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 505
Query: 405 HLPLLEVSILCIARI 419
+LP L+ +LC R+
Sbjct: 506 NLPRLQELLLCNNRL 520
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 301 VYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG--PGFEPLENCKALQQLYLAGNQITSLG 358
++L L+ L +E L V LDLS N + P L + L+ L + N + ++
Sbjct: 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAAL---RCLEVLQASDNALENVD 502
Query: 359 SLPELPNLEFLSVAQNKLKSIA----MASQPRLQVLAASKNKISTLKG 402
+ LP L+ L + N+L+ A + S PRL +L N + +G
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 347 LYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI--AMASQPRLQVLAASKNKISTLKGFP 404
L+LA +T L L +L + L ++ N+L+++ A+A+ L+VL AS N + + G
Sbjct: 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 505
Query: 405 HLPLLEVSILCIARI 419
+LP L+ +LC R+
Sbjct: 506 NLPRLQELLLCNNRL 520
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 301 VYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG--PGFEPLENCKALQQLYLAGNQITSLG 358
++L L+ L +E L V LDLS N + P L + L+ L + N + ++
Sbjct: 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAAL---RCLEVLQASDNALENVD 502
Query: 359 SLPELPNLEFLSVAQNKLKSIA----MASQPRLQVLAASKNKISTLKG 402
+ LP L+ L + N+L+ A + S PRL +L N + +G
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 276 RLDLRGHRVRSL--IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
L L G++++ + +AS NL + L +N +S L + LT++ L L N
Sbjct: 221 ELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN- 275
Query: 334 GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAA 392
PL AL L L NQ+ + + L NL +L++ N + I+ ++S +LQ L
Sbjct: 276 -ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 334
Query: 393 SKNKISTLKGFPHL 406
S NK+S + +L
Sbjct: 335 SNNKVSDVSSLANL 348
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKN 395
PL L +L L GNQ+ +G+L L NL L +A N++ ++A ++ +L L N
Sbjct: 212 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 271
Query: 396 KIST---LKGFPHLPLLEVS 412
+IS L G L LE++
Sbjct: 272 QISNISPLAGLTALTNLELN 291
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFL 369
+++G+E L + ++ S N PL+N L + + NQI + L L NL L
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 112
Query: 370 SVAQNKLKSI----AMASQPRLQVLAASKNKISTLKGFPHLPLLEVS 412
++ N++ I + + RL++ + + + IS L G L L S
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS 159
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
NL + L N +S + + LT ++ LSF+ + +PL N L++L ++ N+++
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQ--QLSFSSNQVTDLKPLANLTTLERLDISSNKVSD 187
Query: 357 LGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNK---ISTLKGFPHLPLLEVS 412
+ L +L NLE L N++ I + L L+ + N+ I TL +L L+++
Sbjct: 188 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 247
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 276 RLDLRGHRVRSL--IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
L L G++++ + +AS NL + L +N +S L + LT++ L L N
Sbjct: 220 ELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN- 274
Query: 334 GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAA 392
PL AL L L NQ+ + + L NL +L++ N + I+ ++S +LQ L
Sbjct: 275 -ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 333
Query: 393 SKNKISTLKGFPHL 406
S NK+S + +L
Sbjct: 334 SNNKVSDVSSLANL 347
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKN 395
PL L +L L GNQ+ +G+L L NL L +A N++ ++A ++ +L L N
Sbjct: 211 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 270
Query: 396 KIST---LKGFPHLPLLEVS 412
+IS L G L LE++
Sbjct: 271 QISNISPLAGLTALTNLELN 290
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFL 369
+++G+E L + ++ S N PL+N L + + NQI + L L NL L
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 112
Query: 370 SVAQNKLKSI----AMASQPRLQVLAASKNKISTLKGFPHL 406
++ N++ I + + RL++ + + + IS L G L
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 153
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
NL + L N +S + + LT ++ L+F + + +PL N L++L ++ N+++
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQ--QLNFGN-QVTDLKPLANLTTLERLDISSNKVSD 186
Query: 357 LGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNK---ISTLKGFPHLPLLEVS 412
+ L +L NLE L N++ I + L L+ + N+ I TL +L L+++
Sbjct: 187 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 246
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 308 LSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLE 367
+++++GIE LT ++ L+L+ N PL N L LY+ N+IT + +L L NL
Sbjct: 56 VASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDISALQNLTNLR 113
Query: 368 FLSVAQNKLKSIA 380
L + ++ + I+
Sbjct: 114 ELYLNEDNISDIS 126
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 339 ENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKI 397
E +++ +L +AG ++ S+ + L NLE+L++ N++ I+ +++ +L L NKI
Sbjct: 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI 100
Query: 398 STLKGFPHL 406
+ + +L
Sbjct: 101 TDISALQNL 109
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 334 GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI-AMASQPRLQVLAA 392
G E L N L+ L L GNQIT + L L L L + NK+ I A+ + L+ L
Sbjct: 61 GIEYLTN---LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117
Query: 393 SKNKISTLKGFPHL 406
+++ IS + +L
Sbjct: 118 NEDNISDISPLANL 131
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 318 TRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLK 377
TR+ L + N K PL N L L + NQI+ + ++ +L L+ L+V N++
Sbjct: 221 TRLNSLKIGNN--KITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQIS 278
Query: 378 SIAMASQ-PRLQVLAASKNKI 397
I++ + +L L + N++
Sbjct: 279 DISVLNNLSQLNSLFLNNNQL 299
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 28/146 (19%)
Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGF 335
+L + G +V S+ G+ NLE++ L N ++ + + L VK+ +L K
Sbjct: 48 KLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISPLSNL--VKLTNLYIGTNKITDI 103
Query: 336 EPLENCKALQQLYL-----------------------AGNQITSLGSLPELPNLEFLSVA 372
L+N L++LYL A + ++ L L L +L+V
Sbjct: 104 SALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVT 163
Query: 373 QNKLKSIA-MASQPRLQVLAASKNKI 397
++K+K + +A+ L L+ + N+I
Sbjct: 164 ESKVKDVTPIANLTDLYSLSLNYNQI 189
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVA 372
+ L + VLD+SFN L LQ+LYL GN++ +L G L P LE LS+A
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 373 QNKLKSI---AMASQPRLQVLAASKNKISTL-KGF 403
N+L + + L L +N + T+ KGF
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVA 372
+ L + VLD+SFN L LQ+LYL GN++ +L G L P LE LS+A
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 373 QNKLKSI---AMASQPRLQVLAASKNKISTL-KGF 403
N+L + + L L +N + T+ KGF
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVA 372
+ L + VLD+SFN L LQ+LYL GN++ +L G L P LE LS+A
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 373 QNKLKSI---AMASQPRLQVLAASKNKISTL-KGF 403
N+L + + L L +N + T+ KGF
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 323 LDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPE-LPNLEFLSVAQNKLKSIAM 381
+DLS+N+ + + P + L++LY++ N++ +L + +P L+ L ++ N L +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE- 311
Query: 382 ASQP---RLQVLAASKNKISTLK 401
+QP RL+ L N I TLK
Sbjct: 312 RNQPQFDRLENLYLDHNSIVTLK 334
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVA 372
+ L + VLD+SFN L LQ+LYL GN++ +L G L P LE LS+A
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 373 QNKLKSI---AMASQPRLQVLAASKNKISTL-KGF 403
N L + + L L +N + T+ KGF
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 276 RLDLRGHRVRSL--IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
L L G++++ + +AS NL + L +N +S L + LT++ L L N
Sbjct: 224 ELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN- 278
Query: 334 GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAA 392
PL AL L L NQ+ + + L NL +L++ N + I+ ++S +LQ L
Sbjct: 279 -ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 337
Query: 393 SKNKISTLKGFPHL 406
+ NK+S + +L
Sbjct: 338 ANNKVSDVSSLANL 351
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKN 395
PL L +L L GNQ+ +G+L L NL L +A N++ ++A ++ +L L N
Sbjct: 215 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 274
Query: 396 KIST---LKGFPHLPLLEVS 412
+IS L G L LE++
Sbjct: 275 QISNISPLAGLTALTNLELN 294
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFL 369
+++G+E L + ++ S N PL+N L + + NQI + L L NL L
Sbjct: 59 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 116
Query: 370 SVAQNKLKSI----AMASQPRLQVLAASKNKISTLKGFPHL 406
++ N++ I + + RL++ + + + IS L G L
Sbjct: 117 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 157
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 276 RLDLRGHRV------------RSLIASG--------LNLQPNLEFVYLRDNMLSTLEGIE 315
RLD+ ++V SLIA+ L + NL+ + L N L + +
Sbjct: 180 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 239
Query: 316 ILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNK 375
LT + LDL+ N PL L +L L NQI+++ L L L L + +N+
Sbjct: 240 SLTNLTDLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 297
Query: 376 LKSIA-MASQPRLQVLAASKNKIS 398
L+ I+ +++ L L N IS
Sbjct: 298 LEDISPISNLKNLTYLTLYFNNIS 321
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
NL + L N +S + + LT ++ LSF + + +PL N L++L ++ N+++
Sbjct: 134 NLNRLELSSNTISDISALSGLTSLQ--QLSFGN-QVTDLKPLANLTTLERLDISSNKVSD 190
Query: 357 LGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNK---ISTLKGFPHLPLLEVS 412
+ L +L NLE L N++ I + L L+ + N+ I TL +L L+++
Sbjct: 191 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 250
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVA 372
+ L + VLD+SFN L LQ+LYL GN++ +L G L P LE LS+A
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 373 QNKLKSI---AMASQPRLQVLAASKNKISTL-KGF 403
N+L + + L L +N + T+ KGF
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVA 372
+ L + VLD+SFN L LQ+LYL GN++ +L G L P LE LS+A
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 373 QNKLKSI---AMASQPRLQVLAASKNKISTL-KGF 403
N L + + L L +N + T+ KGF
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVA 372
+ L + VLD+SFN L LQ+LYL GN++ +L G L P LE LS+A
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 373 QNKLKSI---AMASQPRLQVLAASKNKISTL-KGF 403
N L + + L L +N + T+ KGF
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFNDF 330
D +LDL+ + +L + L ++ L N L TL + LT + L L+ N
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 331 KGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSI---AMASQP 385
++ L +LYL GNQ+ SL G L L+ L + N+L+SI A
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 386 RLQVLAASKNKISTLKGFPH 405
LQ L+ S N++ ++ PH
Sbjct: 156 NLQTLSLSTNQLQSV---PH 172
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFNDF 330
D +LDL+ + +L + L ++ L N L TL + LT + L L+ N
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 331 KGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSI---AMASQP 385
++ L +LYL GNQ+ SL G L L+ L + N+L+SI A
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 386 RLQVLAASKNKISTLKGFPH 405
LQ L+ S N++ ++ PH
Sbjct: 156 NLQTLSLSTNQLQSV---PH 172
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVA 372
+ L + VLD+SFN L LQ+LYL GN++ +L G L P LE LS+A
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 373 QNKLKSI---AMASQPRLQVLAASKNKISTL-KGF 403
N L + + L L +N + T+ KGF
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVA 372
+ L + VLD+SFN L LQ+LYL GN++ +L G L P LE LS+A
Sbjct: 98 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 157
Query: 373 QNKLKSI---AMASQPRLQVLAASKNKISTL-KGF 403
N L + + L L +N + T+ KGF
Sbjct: 158 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVA 372
+ L + VLD+SFN L LQ+LYL GN++ +L G L P LE LS+A
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 373 QNKLKSI---AMASQPRLQVLAASKNKISTL-KGF 403
N L + + L L +N + T+ KGF
Sbjct: 157 NNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 276 RLDLRGHRVRSL--IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
L L G++++ + +AS NL + L +N +S L + LT++ L L N
Sbjct: 225 ELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN- 279
Query: 334 GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAA 392
PL AL L L NQ+ + + L NL +L++ N + I+ ++S +LQ L
Sbjct: 280 -ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338
Query: 393 SKNKISTLKGFPHL 406
NK+S + +L
Sbjct: 339 YNNKVSDVSSLANL 352
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKN 395
PL L +L L GNQ+ +G+L L NL L +A N++ ++A ++ +L L N
Sbjct: 216 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 275
Query: 396 KIST---LKGFPHLPLLEVS 412
+IS L G L LE++
Sbjct: 276 QISNISPLAGLTALTNLELN 295
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFL 369
+++G+E L + ++ S N PL+N L + + NQI + L L NL L
Sbjct: 60 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 117
Query: 370 SVAQNKLKSI----AMASQPRLQVLAASKNKISTLKGFPHL 406
++ N++ I + + RL++ + + + IS L G L
Sbjct: 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 158
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 276 RLDLRGHRV------------RSLIASG--------LNLQPNLEFVYLRDNMLSTLEGIE 315
RLD+ ++V SLIA+ L + NL+ + L N L + +
Sbjct: 181 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 240
Query: 316 ILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNK 375
LT + LDL+ N PL L +L L NQI+++ L L L L + +N+
Sbjct: 241 SLTNLTDLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298
Query: 376 LKSIA-MASQPRLQVLAASKNKIS 398
L+ I+ +++ L L N IS
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNIS 322
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
NL + L N +S + + LT ++ LSF + + +PL N L++L ++ N+++
Sbjct: 135 NLNRLELSSNTISDISALSGLTSLQ--QLSFGN-QVTDLKPLANLTTLERLDISSNKVSD 191
Query: 357 LGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNK---ISTLKGFPHLPLLEVS 412
+ L +L NLE L N++ I + L L+ + N+ I TL +L L+++
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 317 LTRVKVLDLSFNDFKGP---GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQ 373
L ++VLDLS N G G+ + C L+ L ++GN+I+ + NLEFL V+
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS 206
Query: 374 NKLKSI--AMASQPRLQVLAASKNKIS 398
N + + LQ L S NK+S
Sbjct: 207 NNFSTGIPFLGDCSALQHLDISGNKLS 233
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 297 NLEFVYLRDNMLSTLEGIEIL---TRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQ 353
NLEF+ + N ST GI L + ++ LD+S N G + C L+ L ++ NQ
Sbjct: 198 NLEFLDVSSNNFST--GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 354 ITSLGSLPELP--NLEFLSVAQNKL 376
+G +P LP +L++LS+A+NK
Sbjct: 256 F--VGPIPPLPLKSLQYLSLAENKF 278
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 307 MLSTLEGIEI---LTRVKVLD---LSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSL 360
L+ LEG EI L VK L+ L FND G L NC L + L+ N++T G +
Sbjct: 447 WLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT--GEI 503
Query: 361 PE----LPNLEFLSVAQNKL 376
P+ L NL L ++ N
Sbjct: 504 PKWIGRLENLAILKLSNNSF 523
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 320 VKVLDLSFNDFKGPGFEPLENCKA-LQQLYLAGNQITSLGSLPELPNL 366
+KVLDLSFN+F G E L N A L L L+ N + P LPNL
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG----PILPNL 385
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 276 RLDLRGHRVRSL--IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
L L G++++ + +AS NL + L +N +S L + LT++ L L N
Sbjct: 221 ELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN- 275
Query: 334 GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAA 392
PL AL L L NQ+ + + L NL +L++ N + I+ ++S +LQ L
Sbjct: 276 -ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 334
Query: 393 SKNKISTLKGFPHL 406
NK+S + +L
Sbjct: 335 YNNKVSDVSSLANL 348
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKN 395
PL L +L L GNQ+ +G+L L NL L +A N++ ++A ++ +L L N
Sbjct: 212 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 271
Query: 396 KIST---LKGFPHLPLLEVS 412
+IS L G L LE++
Sbjct: 272 QISNISPLAGLTALTNLELN 291
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFL 369
+++G+E L + ++ S N PL+N L + + NQI + L L NL L
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 112
Query: 370 SVAQNKLKSI----AMASQPRLQVLAASKNKISTLKGFPHLPLLEVS 412
++ N++ I + + RL++ + + + IS L G L L S
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS 159
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
NL + L N +S + + LT ++ LSF+ + +PL N L++L ++ N+++
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQ--QLSFSSNQVTDLKPLANLTTLERLDISSNKVSD 187
Query: 357 LGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNK---ISTLKGFPHLPLLEVS 412
+ L +L NLE L N++ I + L L+ + N+ I TL +L L+++
Sbjct: 188 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 247
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 317 LTRVKVLDLSFNDFKGP---GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQ 373
L ++VLDLS N G G+ + C L+ L ++GN+I+ + NLEFL V+
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS 209
Query: 374 NKLKSI--AMASQPRLQVLAASKNKIS 398
N + + LQ L S NK+S
Sbjct: 210 NNFSTGIPFLGDCSALQHLDISGNKLS 236
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 297 NLEFVYLRDNMLSTLEGIEIL---TRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQ 353
NLEF+ + N ST GI L + ++ LD+S N G + C L+ L ++ NQ
Sbjct: 201 NLEFLDVSSNNFST--GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 354 ITSLGSLPELP--NLEFLSVAQNKL 376
+G +P LP +L++LS+A+NK
Sbjct: 259 F--VGPIPPLPLKSLQYLSLAENKF 281
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 307 MLSTLEGIEI---LTRVKVLD---LSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSL 360
L+ LEG EI L VK L+ L FND G L NC L + L+ N++T G +
Sbjct: 450 WLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT--GEI 506
Query: 361 PE----LPNLEFLSVAQNKL 376
P+ L NL L ++ N
Sbjct: 507 PKWIGRLENLAILKLSNNSF 526
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 320 VKVLDLSFNDFKGPGFEPLENCKA-LQQLYLAGNQITSLGSLPELPNL 366
+KVLDLSFN+F G E L N A L L L+ N + P LPNL
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG----PILPNL 388
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 276 RLDLRGHRVRSL--IASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGP 333
L L G++++ + +AS NL + L +N +S L + LT++ L L N
Sbjct: 220 ELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN- 274
Query: 334 GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAA 392
PL AL L L NQ+ + + L NL +L++ N + I+ ++S +LQ L
Sbjct: 275 -ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 333
Query: 393 SKNKISTLKGFPHL 406
NK+S + +L
Sbjct: 334 YNNKVSDVSSLANL 347
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKN 395
PL L +L L GNQ+ +G+L L NL L +A N++ ++A ++ +L L N
Sbjct: 211 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 270
Query: 396 KIST---LKGFPHLPLLEVS 412
+IS L G L LE++
Sbjct: 271 QISNISPLAGLTALTNLELN 290
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFL 369
+++G+E L + ++ S N PL+N L + + NQI + L L NL L
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 112
Query: 370 SVAQNKLKSI----AMASQPRLQVLAASKNKISTLKGFPHL 406
++ N++ I + + RL++ + + + IS L G L
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 153
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 276 RLDLRGHRV------------RSLIASG--------LNLQPNLEFVYLRDNMLSTLEGIE 315
RLD+ ++V SLIA+ L + NL+ + L N L + +
Sbjct: 176 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 235
Query: 316 ILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNK 375
LT + LDL+ N PL L +L L NQI+++ L L L L + +N+
Sbjct: 236 SLTNLTDLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 293
Query: 376 LKSIA-MASQPRLQVLAASKNKIS 398
L+ I+ +++ L L N IS
Sbjct: 294 LEDISPISNLKNLTYLTLYFNNIS 317
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
NL + L N +S + + LT ++ L+F + + +PL N L++L ++ N+++
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQ--QLNFGN-QVTDLKPLANLTTLERLDISSNKVSD 186
Query: 357 LGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNK---ISTLKGFPHLPLLEVS 412
+ L +L NLE L N++ I + L L+ + N+ I TL +L L+++
Sbjct: 187 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 246
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 297 NLEFVYLRDNMLSTLE-GI-EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQI 354
NL+ +YL N L L G+ + LT++ VLDL N + L++L++ N++
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 355 TSL-GSLPELPNLEFLSVAQNKLKSIAMASQPRLQVL 390
T L + L +L L++ QN+LKSI + RL L
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 29/135 (21%)
Query: 272 GDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDF 330
D +LDL+ +++ SL + + L +YL DN L TL GI
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI---------------- 80
Query: 331 KGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSI---AMASQP 385
F+ L+N L+ L++ N++ +L G +L NL L + +N+LKS+ S
Sbjct: 81 ----FKELKN---LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 386 RLQVLAASKNKISTL 400
+L L+ N++ +L
Sbjct: 134 KLTYLSLGYNELQSL 148
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK----G 332
LDL G+ + + A+ L LE + L N+L +E L+ ++ LDL+ N + G
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG 98
Query: 333 PGFEPLE---------NC---KALQQLYLAGNQITSLGSLPE--LPNLEFLSVAQNKLKS 378
P E L +C + + +YLA N+IT L L E +++L + N++ +
Sbjct: 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 379 IAM----ASQPRLQVLAASKNKISTLKG---FPHLPLLEVS 412
+ AS L+ L N I +KG F L L++S
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK----G 332
LDL G+ + + A+ L LE + L N+L +E L+ ++ LDL+ N + G
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG 98
Query: 333 PGFEPLE---------NC---KALQQLYLAGNQITSLGSLPE--LPNLEFLSVAQNKLKS 378
P E L +C + + +YLA N+IT L L E +++L + N++ +
Sbjct: 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 379 IAM----ASQPRLQVLAASKNKISTLKG---FPHLPLLEVS 412
+ AS L+ L N I +KG F L L++S
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 31/126 (24%)
Query: 308 LSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKA----LQQLYLAGNQITSLGSLPEL 363
+S+L G+E +++L L N K +EN A L++L+++ NQI SL + +L
Sbjct: 63 ISSLSGME---NLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQIASLSGIEKL 114
Query: 364 PNLEFLSVAQNKLKSIA----MASQPRLQVL---------------AASKNKISTLKGFP 404
NL L ++ NK+ + +A+ +L+ L A S+ +I +K P
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174
Query: 405 HLPLLE 410
+L L+
Sbjct: 175 NLKKLD 180
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 343 ALQQLYLAGNQITSLGSLP----ELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASKN 395
+L+ L +AGN LP EL NL FL ++Q +L+ + A S LQVL S N
Sbjct: 151 SLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 396 KISTLKGFPHLPLLEVSIL 414
+L FP+ L + +L
Sbjct: 210 NFFSLDTFPYKCLNSLQVL 228
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 31/126 (24%)
Query: 308 LSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKA----LQQLYLAGNQITSLGSLPEL 363
+S+L G+E +++L L N K +EN A L++L+++ NQI SL + +L
Sbjct: 64 ISSLSGME---NLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQIASLSGIEKL 115
Query: 364 PNLEFLSVAQNKLKSIA----MASQPRLQVL---------------AASKNKISTLKGFP 404
NL L ++ NK+ + +A+ +L+ L A S+ +I +K P
Sbjct: 116 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 175
Query: 405 HLPLLE 410
+L L+
Sbjct: 176 NLKKLD 181
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 322 VLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSI 379
LDL N K + +L QLYL GN++ SL G +L +L +L+++ N+L+S+
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 380 ---AMASQPRLQVLAASKNKISTL 400
+L+ LA + N++ +L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSL 115
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 296 PNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQ 353
PNL ++ L N L TL+ L ++VL L N E+ LQ+LYL+ NQ
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 354 ITSL-------GSLPELPNLEFLSVAQNKLKSIAMASQPRL 387
I+ G+ +LP L L ++ NKLK + + +L
Sbjct: 148 ISRFPVELIKDGN--KLPKLMLLDLSSNKLKKLPLTDLQKL 186
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 343 ALQQLYLAGNQITSLGSLP----ELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASKN 395
+L+ L +AGN LP EL NL FL ++Q +L+ + A S LQVL S N
Sbjct: 470 SLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 396 KISTLKGFPH 405
+L FP+
Sbjct: 529 NFFSLDTFPY 538
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPE----LPNLEFLSVAQNKLKSI 379
P+ + K L++L +A N I S LPE L NLE L ++ NK++SI
Sbjct: 143 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 343 ALQQLYLAGNQITSLGSLP----ELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASKN 395
+L+ L +AGN LP EL NL FL ++Q +L+ + A S LQVL S N
Sbjct: 446 SLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 396 KISTLKGFPH 405
+L FP+
Sbjct: 505 NFFSLDTFPY 514
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPE----LPNLEFLSVAQNKLKSIA 380
P+ + K L++L +A N I S LPE L NLE L ++ NK++SI
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 320 VKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLK 377
+K LDLSFN G L C LQ L L ++I ++ + L +LE L ++ N L
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 378 SIA------MASQPRLQVLAASKNKISTLKGFPHL 406
S++ ++S L ++ + FP+L
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 366 LEFLSVAQNKLKSIAMASQPRLQVLAASKNKISTLKG---FPHLPLLEVS 412
LE L V+ N L S ++ PRLQ L S+NK+ TL FP L ++++S
Sbjct: 433 LEVLDVSNNNLDSFSLF-LPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFND---FK 331
LDL +++ + L NL+ + L+ + ++T+EG L ++ LDLS N
Sbjct: 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90
Query: 332 GPGFEPLENCKALQQLYLAGNQITSLGSLPELPNL 366
F PL +L+ L L GN +LG PNL
Sbjct: 91 SSWFGPL---SSLKYLNLMGNPYQTLGVTSLFPNL 122
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 320 VKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLK 377
+K LDLSFN G L C LQ L L ++I ++ + L +LE L ++ N L
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 378 SIA------MASQPRLQVLAASKNKISTLKGFPHL 406
S++ ++S L ++ + FP+L
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 148
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 295 QPNLEFVYLRDNMLSTLEGI-EILTRVKVLDLSFNDFKGPGFEPL-ENCKA---LQQLYL 349
P+L+ + L N L +++ EIL +K +L+ D F P+ ++C+ ++ L L
Sbjct: 386 WPSLQTLVLSQNHLRSMQKTGEILLTLK--NLTSLDISRNTFHPMPDSCQWPEKMRFLNL 443
Query: 350 AGNQITSLGS-LPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNKISTLKGFPHLPL 408
+ I + + +P+ LE L V+ N L S ++ PRLQ L S+NK+ TL P+
Sbjct: 444 SSTGIRVVKTCIPQ--TLEVLDVSNNNLDSFSLF-LPRLQELYISRNKLKTLPDASLFPV 500
Query: 409 LEV 411
L V
Sbjct: 501 LLV 503
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFND---FK 331
LDL +++ + L NL+ + L+ + ++T+EG L ++ LDLS N
Sbjct: 57 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 116
Query: 332 GPGFEPLENCKALQQLYLAGNQITSLGSLPELPNL 366
F PL +L+ L L GN +LG PNL
Sbjct: 117 SSWFGPL---SSLKYLNLMGNPYQTLGVTSLFPNL 148
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 320 VKVLDLSFNDFKGPG-FEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKS 378
++VLD+S N+ F P LQ+LY++ N++ +L P L + +A N+LKS
Sbjct: 459 LEVLDVSNNNLDSFSLFLP-----RLQELYISRNKLKTLPDASLFPVLLVMKIASNQLKS 513
Query: 379 I 379
+
Sbjct: 514 V 514
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 309 STLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNL 366
+T G++ T + +LDLS+N+ G + L+ +L N I L SL L N+
Sbjct: 250 TTFLGLK-WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 308
Query: 367 EFLSVAQNKLK-SIAMASQPRLQVLAASKNKISTLKGFPHLPL 408
+L++ ++ K SI++AS P++ + LK HL +
Sbjct: 309 RYLNLKRSFTKQSISLASLPKIDDFS-----FQWLKCLEHLNM 346
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 309 STLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNL 366
+T G++ T + +LDLS+N+ G + L+ +L N I L SL L N+
Sbjct: 245 TTFLGLK-WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 303
Query: 367 EFLSVAQNKLK-SIAMASQPRLQVLAASKNKISTLKGFPHLPL 408
+L++ ++ K SI++AS P++ + LK HL +
Sbjct: 304 RYLNLKRSFTKQSISLASLPKIDDFS-----FQWLKCLEHLNM 341
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 309 STLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNL 366
+T G++ T + +LDLS+N+ G + L+ +L N I L SL L N+
Sbjct: 240 TTFLGLK-WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 367 EFLSVAQNKLK-SIAMASQPRLQVLAASKNKISTLKGFPHLPL 408
+L++ ++ K SI++AS P++ + LK HL +
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFS-----FQWLKCLEHLNM 336
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336
L L +R+RSL +LE++ + N L + + ++ LDLSFND F+
Sbjct: 81 LRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCP-MASLRHLDLSFND-----FD 134
Query: 337 PLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSIAM 381
L CK L ++T LG S + L+ L VA L I +
Sbjct: 135 VLPVCKEFGNL----TKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 319 RVKVLDLSFN---DFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPN--LEFLSVAQ 373
R K L LS N + + P L + L+ L+ N+I SL L N LE+L V+
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLR---LSHNRIRSLDFHVFLFNQDLEYLDVSH 109
Query: 374 NKLKSIAMASQPRLQVLAASKNKISTL 400
N+L++I+ L+ L S N L
Sbjct: 110 NRLQNISCCPMASLRHLDLSFNDFDVL 136
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 34/162 (20%)
Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFN----- 328
R+ L G+R+ + A+ NL ++L N+L+ ++ L ++ LDLS N
Sbjct: 35 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 94
Query: 329 ----DFKGPG---FEPLENC-------------KALQQLYLAGNQITSL--GSLPELPNL 366
F G G L+ C ALQ LYL N + +L + +L NL
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 154
Query: 367 EFLSVAQNKLKSI---AMASQPRLQVLAASKNKISTLKGFPH 405
L + N++ S+ A L L +N+++ + PH
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--PH 194
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK-- 331
D LDLRG+++ + G L + + DN + L+G +L R+K L ++ N
Sbjct: 21 DRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI 79
Query: 332 GPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLE---FLSVAQN------KLKSIAMA 382
G G + + L +L L N + LG L L +L+ +L + +N + +
Sbjct: 80 GEGLD--QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 137
Query: 383 SQPRLQVLAASKNKI 397
P+++VL K K+
Sbjct: 138 KVPQVRVLDFQKVKL 152
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 34/162 (20%)
Query: 276 RLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEI--LTRVKVLDLSFN----- 328
R+ L G+R+ + A+ NL ++L N+L+ ++ L ++ LDLS N
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 329 ----DFKGPG---FEPLENC-------------KALQQLYLAGNQITSL--GSLPELPNL 366
F G G L+ C ALQ LYL N + +L + +L NL
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 367 EFLSVAQNKLKSI---AMASQPRLQVLAASKNKISTLKGFPH 405
L + N++ S+ A L L +N+++ + PH
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--PH 195
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 320 VKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLK 377
VK LDLS N L+ C LQ L L N I ++ S L +LE L ++ N L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 378 SIA------MASQPRLQVLAASKNKISTLKGFPHLPLLEV 411
+++ ++S L +L + F HL L++
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFN---DFK 331
LDL +R+ + S L NL+ + L N ++T+E L ++ LDLS+N +
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 332 GPGFEPLENCKALQQLYLAGNQITSLGS---LPELPNLEFLSVAQ 373
F+PL +L L L GN +LG L L+ L V
Sbjct: 117 SSWFKPL---SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 55 DPKSGSARSSNLTKPTVSASLKTTNSV----PVTRRKSTGGLPEKSPASTTKQTITADSA 110
D SGS R+ N P V ++ KT N+V T K G L +P ++T D+A
Sbjct: 63 DSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAA 122
Query: 111 VGKKTNTVLSEPVRRSLPEIRRSS-LPSVVTKPTSTRASVSQTR 153
+L E R LP + L ++T+ RA++ R
Sbjct: 123 ------KILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR 160
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 320 VKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLK 377
VK LDLS N L+ C LQ L L N I ++ S L +LE L ++ N L
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 378 SIA------MASQPRLQVLAASKNKISTLKGFPHLPLLEV 411
+++ ++S L +L + F HL L++
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 127
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 15/125 (12%)
Query: 295 QPNLEFVYLRDNMLSTLE--GIEILT--RVKVLDLSFNDFKGPGFEPLENCKA---LQQL 347
P+L+ + LR N L++LE G +LT + +D+S N F P E C+ ++ L
Sbjct: 360 WPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSM---P-ETCQWPEKMKYL 415
Query: 348 YLAGNQITSL-GSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNKISTLKGFPHL 406
L+ +I S+ G +P+ LE L V+ N ++ + P+L+ L S+NK+ TL L
Sbjct: 416 NLSSTRIHSVTGCIPK--TLEILDVSNNN-LNLFSLNLPQLKELYISRNKLMTLPDASLL 472
Query: 407 PLLEV 411
P+L V
Sbjct: 473 PMLLV 477
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFN---DFK 331
LDL +R+ + S L NL+ + L N ++T+E L ++ LDLS+N +
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 332 GPGFEPLENCKALQQLYLAGNQITSLGS---LPELPNLEFLSVAQ 373
F+PL +L L L GN +LG L L+ L V
Sbjct: 91 SSWFKPL---SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 132
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 309 STLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNL 366
ST G++ T + LDLS+N+ G +L+ L L N I L S L NL
Sbjct: 240 STFSGLK-WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNL 298
Query: 367 EFLSVAQNKLK-SIAMASQPRL 387
+LS+ + K S+++AS P +
Sbjct: 299 RYLSLKRAFTKQSVSLASHPNI 320
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 303 LRDNMLSTLEG--IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--G 358
L N L +++ E L +++VLDLS+N + G + L++L L NQ+ S+ G
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389
Query: 359 SLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNK 396
L +L+ + + N S PR+ L+ NK
Sbjct: 390 IFDRLTSLQKIWLHTNPWD----CSCPRIDYLSRWLNK 423
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 21/116 (18%)
Query: 296 PNLEFVYLRDNMLS-------TLEGIEILTRVKVLDLSFNDFKG--PGFEPLENCKALQQ 346
P+LE ++L +NML + E L+ ++VL L+ N PG + AL+
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG--VFSHLTALRG 508
Query: 347 LYLAGNQITSLGSLPELP-NLEFLSVAQNKLKSIAMASQPR----LQVLAASKNKI 397
L L N++T L S +LP NLE L +++N+L +A P L VL + NK
Sbjct: 509 LSLNSNRLTVL-SHNDLPANLEILDISRNQL----LAPNPDVFVSLSVLDITHNKF 559
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 298 LEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS 356
L ++ L + ++ L GIE +K DL+ N+ + P+ L++L + G +TS
Sbjct: 46 LTYITLANINVTDLTGIEYAHNIK--DLTINNIHATNYNPISGLSNLERLRIXGKDVTS 102
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 312 EGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSV 371
E + LT + + S D G +E L +L N IT+L L + NL +L+
Sbjct: 39 EQLATLTSLDCHNSSITDMTG-----IEKLTGLTKLICTSNNITTL-DLSQNTNLTYLAC 92
Query: 372 AQNKLKSIAMASQPRLQVLAASKNKISTLK 401
NKL ++ + +L L NK++ L
Sbjct: 93 DSNKLTNLDVTPLTKLTYLNCDTNKLTKLD 122
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGI-EILTRVKVLDLSFNDF 330
D RL L +++ L + NL+ +Y N L+ + G+ + LT++ LDL+ N
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 331 KGPGFEPLENCKALQQLYLAGN 352
K +N K+L +YL N
Sbjct: 94 KSIPRGAFDNLKSLTHIYLYNN 115
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 334 GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI 379
G + L N + L L GN++ + +L EL NL +L + N+L+S+
Sbjct: 58 GIQYLPNVRYLA---LGGNKLHDISALKELTNLTYLILTGNQLQSL 100
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 297 NLEFVYLRDNMLSTL-EGI-EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQI 354
NL ++ L N L +L +G+ + LT + LDLS+N + + L+ L L NQ+
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 355 TSL--GSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNKIS 398
S+ G L +L+++ + N P ++ L+ NK S
Sbjct: 194 KSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHS 235
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 317 LTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQN 374
L K+ ++ DFK N K L L L N+I+ + G+ L LE L +++N
Sbjct: 59 LQNNKITEIKDGDFK--------NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 375 KLKSIAMASQPRLQVLAASKNKISTLK 401
+LK + LQ L +N+I+ ++
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVR 137
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 317 LTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQN 374
L K+ ++ DFK N K L L L N+I+ + G+ L LE L +++N
Sbjct: 59 LQNNKITEIKDGDFK--------NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 375 KLKSIAMASQPRLQVLAASKNKISTLK 401
+LK + LQ L +N+I+ ++
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVR 137
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDF 330
D L L G++ +L+ L+ +L + L +N +STL + +T++ L LS+N
Sbjct: 32 DVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 331 KGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKL 376
+ + K+L+ L L GN I+ + G+ +L L L++ N L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 334 GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI 379
G + L N + L L GN++ + +L EL NL +L + N+L+S+
Sbjct: 58 GIQYLPNVRYLA---LGGNKLHDISALKELTNLTYLILTGNQLQSL 100
>pdb|3G3O|A Chain A, Crystal Structure Of The Cytoplasmic Tunnel Domain In
Yeast Vtc2p
Length = 392
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 55 DPKSGSARSSNLTKPTVSASLKTTNSVPVTRRKSTGGLPEKSPASTTKQTITADSAVGK 113
DP + N + L NS P R + TG L +K K+T+ D A GK
Sbjct: 114 DPLINTLYFDNEHFELYNDKLLKLNSAPTLRLRWTGQLSDKPDIFLEKKTLIEDEATGK 172
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPE----LPNLEFLSVAQNKLKSI 379
P+ + K L++L +A N I S LPE L NLE L ++ NK++SI
Sbjct: 120 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPE----LPNLEFLSVAQNKLKSI 379
P+ + K L++L +A N I S LPE L NLE L ++ NK++SI
Sbjct: 121 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPE----LPNLEFLSVAQNKLKSI 379
P+ + K L++L +A N I S LPE L NLE L ++ NK++SI
Sbjct: 120 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPE----LPNLEFLSVAQNKLKSI 379
P+ + K L++L +A N I S LPE L NLE L ++ NK++SI
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPE----LPNLEFLSVAQNKLKSI 379
P+ + K L++L +A N I S LPE L NLE L ++ NK++SI
Sbjct: 121 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 337 PLENCKALQQLYLAGNQITSLGSLPE----LPNLEFLSVAQNKLKSI 379
P+ + K L++L +A N I S LPE L NLE L ++ NK++SI
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 23/99 (23%)
Query: 319 RVKVLDLSFNDFKGPGFEPLE--NCK----------ALQQLYLAGNQITSLGSLPELPNL 366
RVK D S+N G++ LE NCK +L++L N+ + S +LP+L
Sbjct: 296 RVK--DFSYN----FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349
Query: 367 EFLSVAQNKLKSIAMASQPR-----LQVLAASKNKISTL 400
EFL +++N L SQ L+ L S N + T+
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 277 LDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--- 331
L L + VR + N P+L + L DN L+T+ + E L++++ L L N +
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 332 GPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI-AMASQPRLQVL 390
F + + + L L + S + L NL +L++ LK I + + RL+ L
Sbjct: 124 SYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEEL 183
Query: 391 AASKNKISTLK 401
S N++ ++
Sbjct: 184 ELSGNRLDLIR 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,540,375
Number of Sequences: 62578
Number of extensions: 334027
Number of successful extensions: 1051
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 251
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)