Query 014262
Match_columns 428
No_of_seqs 501 out of 2464
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:25:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194 Membrane glycoprotein 99.8 1E-22 2.2E-27 209.8 -0.2 197 229-425 225-434 (873)
2 KOG4194 Membrane glycoprotein 99.8 1.1E-20 2.4E-25 194.9 2.1 191 230-420 178-378 (873)
3 PLN00113 leucine-rich repeat r 99.8 3.3E-18 7.2E-23 193.8 12.5 189 230-420 98-297 (968)
4 PLN00113 leucine-rich repeat r 99.8 3.6E-18 7.8E-23 193.5 12.5 189 231-419 146-344 (968)
5 KOG0444 Cytoskeletal regulator 99.7 1.3E-18 2.8E-23 180.7 -3.2 173 247-419 101-303 (1255)
6 KOG0444 Cytoskeletal regulator 99.7 3.2E-18 6.9E-23 177.8 -2.1 178 244-423 73-284 (1255)
7 KOG0617 Ras suppressor protein 99.7 7.9E-19 1.7E-23 158.0 -5.8 173 247-420 31-212 (264)
8 KOG0617 Ras suppressor protein 99.7 1.2E-18 2.5E-23 156.9 -5.4 158 263-423 25-189 (264)
9 KOG0472 Leucine-rich repeat pr 99.6 4.1E-18 9E-23 169.8 -8.1 178 244-423 109-291 (565)
10 KOG0472 Leucine-rich repeat pr 99.6 4.8E-18 1E-22 169.3 -8.3 179 243-425 131-315 (565)
11 PRK15387 E3 ubiquitin-protein 99.6 5.6E-15 1.2E-19 162.2 10.7 118 297-423 343-461 (788)
12 KOG4237 Extracellular matrix p 99.6 1.4E-16 2.9E-21 158.8 -2.6 197 228-424 70-364 (498)
13 PRK15370 E3 ubiquitin-protein 99.6 1.1E-14 2.4E-19 160.1 11.9 179 229-422 203-382 (754)
14 KOG0618 Serine/threonine phosp 99.5 2.5E-16 5.4E-21 170.0 -4.4 190 231-422 247-491 (1081)
15 KOG4237 Extracellular matrix p 99.5 3.2E-16 7E-21 156.1 -4.2 177 251-427 69-342 (498)
16 PRK15387 E3 ubiquitin-protein 99.5 6.2E-14 1.3E-18 154.0 13.1 154 230-402 206-359 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 5.5E-14 1.2E-18 154.7 12.2 179 230-423 183-362 (754)
18 KOG0618 Serine/threonine phosp 99.5 3.3E-16 7.2E-21 169.0 -6.0 172 249-421 241-466 (1081)
19 KOG0532 Leucine-rich repeat (L 99.4 3.9E-15 8.5E-20 154.0 -4.4 177 246-426 72-253 (722)
20 cd00116 LRR_RI Leucine-rich re 99.4 4.2E-14 9.1E-19 139.4 1.4 180 244-423 76-294 (319)
21 PF14580 LRR_9: Leucine-rich r 99.4 5.5E-14 1.2E-18 129.0 1.8 131 258-392 6-147 (175)
22 KOG1259 Nischarin, modulator o 99.4 3.2E-14 6.8E-19 137.9 -0.3 177 244-422 209-414 (490)
23 COG4886 Leucine-rich repeat (L 99.4 2.2E-13 4.7E-18 139.5 5.1 175 246-422 113-292 (394)
24 PF14580 LRR_9: Leucine-rich r 99.4 4.2E-13 9.1E-18 123.2 4.0 121 292-414 15-147 (175)
25 PLN03210 Resistant to P. syrin 99.3 9.6E-12 2.1E-16 143.9 15.7 98 318-416 778-878 (1153)
26 cd00116 LRR_RI Leucine-rich re 99.3 1.5E-13 3.2E-18 135.5 0.2 172 249-420 51-263 (319)
27 KOG0531 Protein phosphatase 1, 99.3 1.7E-13 3.7E-18 141.9 0.1 176 245-423 91-271 (414)
28 KOG1259 Nischarin, modulator o 99.3 1E-13 2.2E-18 134.4 -1.5 130 271-402 283-416 (490)
29 PLN03210 Resistant to P. syrin 99.3 1.7E-11 3.7E-16 141.9 14.8 160 250-412 590-752 (1153)
30 KOG0532 Leucine-rich repeat (L 99.3 5.6E-14 1.2E-18 145.6 -5.6 179 242-424 43-228 (722)
31 KOG0531 Protein phosphatase 1, 99.2 5.8E-13 1.3E-17 138.0 -2.6 174 246-422 69-247 (414)
32 KOG3207 Beta-tubulin folding c 99.2 6.5E-12 1.4E-16 127.0 0.7 173 248-420 145-339 (505)
33 COG4886 Leucine-rich repeat (L 99.1 2.2E-11 4.9E-16 124.6 4.4 170 253-424 97-272 (394)
34 KOG3207 Beta-tubulin folding c 99.1 5.2E-12 1.1E-16 127.7 -0.7 178 247-424 119-318 (505)
35 KOG1859 Leucine-rich repeat pr 99.1 7E-13 1.5E-17 140.5 -8.3 125 273-399 165-293 (1096)
36 KOG1859 Leucine-rich repeat pr 99.1 1.1E-12 2.3E-17 139.1 -8.9 127 296-424 164-296 (1096)
37 KOG1909 Ran GTPase-activating 99.0 4.1E-11 8.8E-16 118.4 -0.0 176 244-419 87-310 (382)
38 PLN03150 hypothetical protein; 98.8 1.1E-08 2.4E-13 111.4 7.7 102 274-375 420-526 (623)
39 PF13855 LRR_8: Leucine rich r 98.7 7.1E-09 1.5E-13 78.3 3.6 57 273-329 2-60 (61)
40 KOG1909 Ran GTPase-activating 98.7 1.9E-09 4E-14 106.8 0.4 174 248-421 57-284 (382)
41 PF13855 LRR_8: Leucine rich r 98.7 5.2E-09 1.1E-13 79.0 2.7 59 296-354 1-61 (61)
42 PLN03150 hypothetical protein; 98.7 2.1E-08 4.6E-13 109.2 7.5 105 250-354 419-527 (623)
43 KOG1644 U2-associated snRNP A' 98.7 2E-08 4.3E-13 93.2 5.7 119 274-394 21-149 (233)
44 KOG1644 U2-associated snRNP A' 98.5 1.7E-07 3.6E-12 87.1 5.5 130 245-376 15-152 (233)
45 KOG4658 Apoptotic ATPase [Sign 98.5 8.9E-08 1.9E-12 107.6 4.6 172 250-421 546-731 (889)
46 KOG2982 Uncharacterized conser 98.4 8.5E-08 1.8E-12 93.6 1.2 171 249-419 71-261 (418)
47 KOG2120 SCF ubiquitin ligase, 98.3 1.2E-08 2.6E-13 99.4 -5.9 169 250-418 186-374 (419)
48 KOG4579 Leucine-rich repeat (L 98.3 2.4E-08 5.3E-13 87.6 -3.9 109 249-358 27-139 (177)
49 COG5238 RNA1 Ran GTPase-activa 98.3 1.1E-07 2.5E-12 91.7 -0.3 125 296-420 157-316 (388)
50 KOG4579 Leucine-rich repeat (L 98.2 3.5E-08 7.6E-13 86.6 -4.8 106 274-380 29-139 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.2 4.3E-07 9.4E-12 87.8 1.8 173 248-420 29-255 (388)
52 KOG4658 Apoptotic ATPase [Sign 98.2 1.1E-06 2.5E-11 98.8 5.3 99 252-352 526-628 (889)
53 PRK15386 type III secretion pr 98.2 4.6E-06 1E-10 85.9 9.2 137 245-396 48-188 (426)
54 KOG2982 Uncharacterized conser 98.1 7.3E-07 1.6E-11 87.2 1.0 154 270-423 69-240 (418)
55 KOG2739 Leucine-rich acidic nu 98.0 2.4E-06 5.3E-11 82.1 2.1 101 292-392 39-150 (260)
56 KOG3665 ZYG-1-like serine/thre 98.0 3.1E-06 6.7E-11 93.2 2.9 103 295-399 147-264 (699)
57 PF12799 LRR_4: Leucine Rich r 98.0 5.7E-06 1.2E-10 58.6 3.0 38 386-423 2-40 (44)
58 KOG2123 Uncharacterized conser 97.9 3.5E-07 7.7E-12 88.6 -5.1 99 247-348 17-123 (388)
59 KOG3665 ZYG-1-like serine/thre 97.9 3.7E-06 7.9E-11 92.6 2.0 126 296-421 122-264 (699)
60 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.2E-10 56.5 3.9 37 274-311 3-39 (44)
61 PF13306 LRR_5: Leucine rich r 97.8 6.9E-05 1.5E-09 64.0 6.6 105 241-350 4-111 (129)
62 KOG2123 Uncharacterized conser 97.7 9.6E-07 2.1E-11 85.7 -5.9 95 317-413 18-123 (388)
63 PRK15386 type III secretion pr 97.7 0.00028 6E-09 73.0 10.5 133 270-418 50-188 (426)
64 PF13306 LRR_5: Leucine rich r 97.6 0.00022 4.9E-09 60.8 7.6 98 270-372 10-111 (129)
65 KOG2739 Leucine-rich acidic nu 97.5 6.9E-05 1.5E-09 72.2 2.8 99 314-414 39-150 (260)
66 KOG2120 SCF ubiquitin ligase, 97.3 8.8E-06 1.9E-10 79.8 -5.4 39 381-419 309-350 (419)
67 KOG4308 LRR-containing protein 96.6 2E-05 4.2E-10 83.4 -11.0 172 251-422 89-305 (478)
68 KOG4308 LRR-containing protein 95.7 0.00016 3.4E-09 76.6 -9.4 149 274-422 89-277 (478)
69 KOG1947 Leucine rich repeat pr 93.9 0.0066 1.4E-07 62.9 -2.9 60 294-353 241-306 (482)
70 KOG0473 Leucine-rich repeat pr 93.7 0.0015 3.2E-08 62.5 -7.4 81 271-353 41-122 (326)
71 KOG0473 Leucine-rich repeat pr 92.9 0.0023 4.9E-08 61.3 -7.4 85 313-398 37-124 (326)
72 KOG3864 Uncharacterized conser 92.3 0.019 4E-07 53.9 -2.1 45 263-307 92-136 (221)
73 PF00560 LRR_1: Leucine Rich R 92.1 0.05 1.1E-06 32.4 0.3 12 320-331 2-13 (22)
74 PF13504 LRR_7: Leucine rich r 91.5 0.12 2.6E-06 28.9 1.4 15 297-311 2-16 (17)
75 PF00560 LRR_1: Leucine Rich R 91.3 0.11 2.4E-06 30.9 1.2 14 274-287 2-15 (22)
76 KOG4341 F-box protein containi 90.5 0.069 1.5E-06 55.0 -0.3 125 294-418 292-437 (483)
77 PF13504 LRR_7: Leucine rich r 90.4 0.15 3.3E-06 28.5 1.2 9 367-375 4-12 (17)
78 KOG1947 Leucine rich repeat pr 89.7 0.078 1.7E-06 54.9 -0.8 106 271-376 187-307 (482)
79 KOG3763 mRNA export factor TAP 89.2 0.12 2.6E-06 55.0 0.1 60 340-399 216-284 (585)
80 KOG3864 Uncharacterized conser 86.7 0.073 1.6E-06 50.0 -2.9 76 319-394 102-185 (221)
81 smart00370 LRR Leucine-rich re 83.1 0.92 2E-05 27.7 1.8 12 320-331 4-15 (26)
82 smart00369 LRR_TYP Leucine-ric 83.1 0.92 2E-05 27.7 1.8 12 320-331 4-15 (26)
83 smart00370 LRR Leucine-rich re 82.3 1 2.2E-05 27.5 1.8 15 297-311 3-17 (26)
84 smart00369 LRR_TYP Leucine-ric 82.3 1 2.2E-05 27.5 1.8 15 297-311 3-17 (26)
85 smart00365 LRR_SD22 Leucine-ri 80.5 1.4 3E-05 27.6 1.9 18 385-402 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 79.6 1.5 3.3E-05 27.4 1.9 17 296-312 2-18 (26)
87 KOG4341 F-box protein containi 76.4 1.2 2.6E-05 46.3 1.1 127 270-396 292-437 (483)
88 smart00364 LRR_BAC Leucine-ric 73.7 2.2 4.8E-05 26.8 1.4 20 385-404 2-21 (26)
89 KOG3763 mRNA export factor TAP 72.7 1.9 4.2E-05 46.2 1.6 34 295-328 217-254 (585)
90 PF13516 LRR_6: Leucine Rich r 62.8 3.5 7.6E-05 24.6 0.7 13 365-377 3-15 (24)
91 smart00368 LRR_RI Leucine rich 55.4 7.8 0.00017 24.3 1.4 13 386-398 3-15 (28)
92 KOG4242 Predicted myosin-I-bin 38.6 1.1E+02 0.0024 32.8 7.4 13 295-307 267-279 (553)
93 TIGR00864 PCC polycystin catio 33.4 25 0.00055 44.7 2.1 31 255-285 1-32 (2740)
94 TIGR00864 PCC polycystin catio 26.5 39 0.00084 43.2 2.1 31 302-332 1-33 (2740)
95 KOG4242 Predicted myosin-I-bin 26.2 60 0.0013 34.6 3.1 80 297-377 215-312 (553)
96 smart00367 LRR_CC Leucine-rich 21.3 60 0.0013 19.6 1.3 11 296-306 2-12 (26)
No 1
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1e-22 Score=209.83 Aligned_cols=197 Identities=20% Similarity=0.191 Sum_probs=162.7
Q ss_pred CcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccc-cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC
Q 014262 229 GLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM 307 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~-~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~ 307 (428)
.|.|..|.|..++...|.|+..|+.|.+..|++..+.+..| .+.++++|+|.+|++..+...++.++..|+.|+|++|.
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 35677777777777788888888888888888887776544 77888888888888888888888888888888888888
Q ss_pred CCCC--ccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcCCcc----
Q 014262 308 LSTL--EGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSI---- 379 (428)
Q Consensus 308 Ls~l--p~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L~~l---- 379 (428)
|..+ ..+..+.+|++|+|++|+|+...+..|..|..|++|+|++|.|..+ ..|..+.+|+.|||++|.|...
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 8877 3577788888888888888888888888888888888888888888 3688888999999999988765
Q ss_pred --ccCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCCCCcccc
Q 014262 380 --AMASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARICIAHLL 425 (428)
Q Consensus 380 --~l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I~~~~l~ 425 (428)
+|..|+.|+.|+|.+|+|..|+ .|..+..|++|||.+|.|...+..
T Consensus 385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 4888999999999999999987 799999999999999998666543
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-20 Score=194.91 Aligned_cols=191 Identities=23% Similarity=0.222 Sum_probs=132.3
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceeccccccc-CCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIK-AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~-l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
|.|..|.|..+....|.++..|.+|.|.+|+++.+|.-.|+ +++|+.|+|..|+|..+.--.|.+++.|+.|.|..|.|
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 56666677777777777777777777777777777766664 66777777777776665555566777777777777777
Q ss_pred CCCcc--ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcCCccc---c
Q 014262 309 STLEG--IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSIA---M 381 (428)
Q Consensus 309 s~lp~--l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L~~l~---l 381 (428)
..+.+ |..|.++++|+|..|++...--.++.+|..|++|+|++|.|..+ ..|..+++|++|+|++|+|+.++ |
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 66642 66677777777777777766666677777777777777777766 35666777777777777777763 5
Q ss_pred CCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCCC
Q 014262 382 ASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 382 ~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I~ 420 (428)
..|..|++|+|++|.|..+. .|..+.+|++|||.+|.|.
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 56667777777777777765 4666777777777777764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=3.3e-18 Score=193.79 Aligned_cols=189 Identities=20% Similarity=0.203 Sum_probs=140.1
Q ss_pred cccCCCccc-ccCCCCCCCCCCCceeeeCCCCce-ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC
Q 014262 230 LRNGSLSSS-LDRSSNLSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM 307 (428)
Q Consensus 230 L~L~~~si~-~l~~~~fs~l~~L~~L~L~~n~L~-~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~ 307 (428)
|.+.++.+. .+....|..+.+|++|++.+|.+. .+|.. .+.+|++|+|++|.+.+..+..|..+++|++|+|++|.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc--ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 445555443 233334556777777777777776 44443 36777888888888877777778888888888888888
Q ss_pred CCC-Cc-cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC-C-CCCCCCCCCEEEcCCCcCCcc---c
Q 014262 308 LST-LE-GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL-G-SLPELPNLEFLSVAQNKLKSI---A 380 (428)
Q Consensus 308 Ls~-lp-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l-~-~l~~L~~L~~L~Ls~N~L~~l---~ 380 (428)
+.. +| .+..+++|++|+|++|.+.+.+|..|.++.+|++|+|.+|.+.+. + .+..+.+|++|+|.+|.+.+. .
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 764 34 377788888888888888877788888888888888888888754 3 577888888888888887754 2
Q ss_pred cCCCCCccEEEccCCCCCC-CC-CCCCCCCCcEEEccCCCCC
Q 014262 381 MASQPRLQVLAASKNKIST-LK-GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 381 l~~L~~L~~L~Ls~N~Lt~-lp-~l~~L~~L~~L~Ls~N~I~ 420 (428)
+..+.+|++|+|.+|.|.+ +| .+.++.+|++|+|++|.+.
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 7778888888888888875 44 6778888888888888875
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=3.6e-18 Score=193.51 Aligned_cols=189 Identities=23% Similarity=0.268 Sum_probs=95.8
Q ss_pred ccCCCcccccCCCCCCCCCCCceeeeCCCCce-ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 231 RNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 231 ~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~-~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
.+.++.+.......|..+.+|++|++.+|.+. .+|..+.++.+|++|+|.+|.+.+..|..|..+.+|++|+|.+|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 34444433333334555555666666655554 44555555555666666666655555555555556666666655555
Q ss_pred C-Cc-cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC-C-CCCCCCCCCEEEcCCCcCCcc-c--cC
Q 014262 310 T-LE-GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL-G-SLPELPNLEFLSVAQNKLKSI-A--MA 382 (428)
Q Consensus 310 ~-lp-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l-~-~l~~L~~L~~L~Ls~N~L~~l-~--l~ 382 (428)
+ +| .|..+++|++|+|.+|.+.+.+|..|.++.+|++|+|.+|.+.+. + .+..+.+|+.|+|++|.+.+. + +.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 3 22 255555555555555555555555555555555555555555432 2 344455555555555554432 1 34
Q ss_pred CCCCccEEEccCCCCCC-CC-CCCCCCCCcEEEccCCCC
Q 014262 383 SQPRLQVLAASKNKIST-LK-GFPHLPLLEVSILCIARI 419 (428)
Q Consensus 383 ~L~~L~~L~Ls~N~Lt~-lp-~l~~L~~L~~L~Ls~N~I 419 (428)
.+++|++|+|.+|.+.+ ++ .+..+++|+.|+|.+|.+
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 44444444444444443 12 234444444444444443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.68 E-value=1.3e-18 Score=180.68 Aligned_cols=173 Identities=20% Similarity=0.222 Sum_probs=93.5
Q ss_pred CCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cccCCCcccEEEc
Q 014262 247 GQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLDL 325 (428)
Q Consensus 247 ~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~~L~~L~~LdL 325 (428)
.+..|.+|||++|++.++|..+-...++..|+|++|+|..|+...|.++..|-+|||++|++..+| .+..|.+|+.|+|
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence 344455555555555555555544555555555555555555555555555555555555555553 2455555555555
Q ss_pred cCCCCCC-------------------------CCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCcc
Q 014262 326 SFNDFKG-------------------------PGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSI 379 (428)
Q Consensus 326 s~N~L~~-------------------------~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l 379 (428)
++|.+.. .+|..+..|.+|..+||++|.+..+| .+..+.+|+.|+|++|+|+.+
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee
Confidence 5554321 12333444455555555555555553 455555666666666666655
Q ss_pred --ccCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCC
Q 014262 380 --AMASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARI 419 (428)
Q Consensus 380 --~l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I 419 (428)
..+.+.+|+.|+|++|+|+.+| .++.|+.|+.|++.+|++
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence 2444555666666666666555 455556666666655554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=3.2e-18 Score=177.77 Aligned_cols=178 Identities=24% Similarity=0.245 Sum_probs=134.1
Q ss_pred CCCCCCCCceeeeCCCCce--ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCc
Q 014262 244 NLSGQRRAGTPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTR 319 (428)
Q Consensus 244 ~fs~l~~L~~L~L~~n~L~--~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~ 319 (428)
.+..+..|+.+++++|++. -||..+|.+..|..|||++|++.+.+. .+.+-+++..|+|++|+|..||. |.+|..
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~-~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT-NLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch-hhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 4566777888888888887 789999999999999999999998754 48888899999999999999975 788899
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC--CC-------------------------CCCCCCCCEEEcC
Q 014262 320 VKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GS-------------------------LPELPNLEFLSVA 372 (428)
Q Consensus 320 L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~-------------------------l~~L~~L~~L~Ls 372 (428)
|-+|||++|++.. +|..+..|.+|+.|+|++|.+..+ .. +..+.+|..+||+
T Consensus 152 LLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred Hhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 9999999999987 666788889999999999876542 12 3344556666666
Q ss_pred CCcCCccc--cCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCCCcc
Q 014262 373 QNKLKSIA--MASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 373 ~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
+|.|..+| +..+.+|+.|+|++|.|+.+. ....+.+|+.|+|++|+++.++
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP 284 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP 284 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccch
Confidence 66666663 556666666666666666664 4455556666677777665554
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=7.9e-19 Score=158.04 Aligned_cols=173 Identities=22% Similarity=0.301 Sum_probs=143.2
Q ss_pred CCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cccCCCcccEEEc
Q 014262 247 GQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLDL 325 (428)
Q Consensus 247 ~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~~L~~L~~LdL 325 (428)
.+.+...|.+++|++..+|..+..+.+|+.|+|.+|+|.+++.. +..++.|++|++.-|++..+| +|+.++.|++|||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 34455678889999999999888889999999999999888654 788899999999999988887 5899999999999
Q ss_pred cCCCCCC-CCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCccc--cCCCCCccEEEccCCCCCCCC
Q 014262 326 SFNDFKG-PGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSIA--MASQPRLQVLAASKNKISTLK 401 (428)
Q Consensus 326 s~N~L~~-~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp 401 (428)
.+|++.. .+|..|..|..|+.|+|+.|.+.-+| .++.+.+|+.|.+.+|.+-.+| ++.+..|++|++++|+++-+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 9988864 57888888999999999999998884 7889999999999999988885 888899999999999998875
Q ss_pred -CCCCCC---CCcEEEccCCCCC
Q 014262 402 -GFPHLP---LLEVSILCIARIC 420 (428)
Q Consensus 402 -~l~~L~---~L~~L~Ls~N~I~ 420 (428)
+++++. +-+.+.+.+|+|-
T Consensus 190 pel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 190 PELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred hhhhhhhhhhhHHHHhhhhCCCC
Confidence 665543 2345666777763
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-18 Score=156.95 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=143.3
Q ss_pred ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cccCCCcccEEEccCCCCCCCCCCCCCCC
Q 014262 263 VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLDLSFNDFKGPGFEPLENC 341 (428)
Q Consensus 263 ~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L 341 (428)
+++. ++.+.+++.|.|++|.++.++|. +..+.+|+.|+|.+|+|+++| .+..+++|++|++..|++.. +|..|+.+
T Consensus 25 ~~~g-Lf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~-lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPG-LFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI-LPRGFGSF 101 (264)
T ss_pred hccc-ccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc-CccccCCC
Confidence 3443 44688999999999999998776 889999999999999999997 59999999999999999875 89999999
Q ss_pred CCCcEEEccCCcCCCC--C-CCCCCCCCCEEEcCCCcCCccc--cCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEcc
Q 014262 342 KALQQLYLAGNQITSL--G-SLPELPNLEFLSVAQNKLKSIA--MASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILC 415 (428)
Q Consensus 342 ~~L~~L~Ls~N~Lt~l--~-~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls 415 (428)
+.|+.|||.+|++..- | .|..+..|+.|+|++|.|.-+| ++++.+|+.|.+.+|.+-.+| +++.+..|++|+++
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 9999999999999864 3 6888999999999999999995 999999999999999999988 89999999999999
Q ss_pred CCCCCCcc
Q 014262 416 IARICIAH 423 (428)
Q Consensus 416 ~N~I~~~~ 423 (428)
+|+++.++
T Consensus 182 gnrl~vlp 189 (264)
T KOG0617|consen 182 GNRLTVLP 189 (264)
T ss_pred cceeeecC
Confidence 99997765
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=4.1e-18 Score=169.78 Aligned_cols=178 Identities=22% Similarity=0.188 Sum_probs=110.5
Q ss_pred CCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc-ccCCCcccE
Q 014262 244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG-IEILTRVKV 322 (428)
Q Consensus 244 ~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~-l~~L~~L~~ 322 (428)
.+..+..++.++|.+|.+.++++.++.+..++.|+..+|+|..++++ +..+..|..|++.+|++..+++ .-.++.|++
T Consensus 109 ~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 109 QIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKH 187 (565)
T ss_pred HHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHh
Confidence 34444556677777777777777777777777777777777766544 4455566666666666666542 333666677
Q ss_pred EEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCC
Q 014262 323 LDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKIST 399 (428)
Q Consensus 323 LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~ 399 (428)
||+..|.+.. +|..++.|..|+.|||.+|+|..+|.|..|..|.+|+++.|.|..++ ..++..|..|||.+|+|+.
T Consensus 188 ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 188 LDCNSNLLET-LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred cccchhhhhc-CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc
Confidence 7766666654 56666667777777777777766666666666666666555555553 3355555555555555555
Q ss_pred CC-CCCCCCCCcEEEccCCCCCCcc
Q 014262 400 LK-GFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 400 lp-~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
+| +++.+.+|.+||+++|.|..++
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCC
Confidence 55 4555555555555555555544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=4.8e-18 Score=169.32 Aligned_cols=179 Identities=23% Similarity=0.280 Sum_probs=162.7
Q ss_pred CCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cccCCCccc
Q 014262 243 SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVK 321 (428)
Q Consensus 243 ~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~~L~~L~ 321 (428)
.++..+..+..++..+|++..+|+.++.+..+..|++.+|++..++++.+. |+.|++||+..|.++.+| +++.+..|.
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~ 209 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLE 209 (565)
T ss_pred chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhH
Confidence 455566678889999999999999999999999999999999999988776 999999999999999997 599999999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc--cCCCCCccEEEccCCCC
Q 014262 322 VLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA--MASQPRLQVLAASKNKI 397 (428)
Q Consensus 322 ~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N~L 397 (428)
.|||.+|+|.. +| .|..|..|.+|++..|.|..++ ...++..|..|||.+|+|+++| +..+.+|++||+++|.|
T Consensus 210 ~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 210 LLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred HHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence 99999999997 55 8999999999999999999996 5679999999999999999996 67789999999999999
Q ss_pred CCCC-CCCCCCCCcEEEccCCCCCCcccc
Q 014262 398 STLK-GFPHLPLLEVSILCIARICIAHLL 425 (428)
Q Consensus 398 t~lp-~l~~L~~L~~L~Ls~N~I~~~~l~ 425 (428)
+.+| .++++ +|+.|-+.||++.+++--
T Consensus 288 s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 288 SSLPYSLGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred ccCCcccccc-eeeehhhcCCchHHHHHH
Confidence 9998 89999 999999999998765443
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=5.6e-15 Score=162.16 Aligned_cols=118 Identities=25% Similarity=0.240 Sum_probs=89.9
Q ss_pred CCcEEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcC
Q 014262 297 NLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKL 376 (428)
Q Consensus 297 ~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L 376 (428)
+|++|+|++|+|+.+|.+ ..+|+.|++.+|.|.. +|.. +.+|+.|+|++|.|..++.+ ..+|+.|+|++|.|
T Consensus 343 ~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~L 414 (788)
T PRK15387 343 GLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRL 414 (788)
T ss_pred ccceEecCCCccCCCCCC--Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc--ccCCCEEEccCCcC
Confidence 567777777777766643 3466667777777665 3432 24688889999988887754 35789999999999
Q ss_pred CccccCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCCCcc
Q 014262 377 KSIAMASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 377 ~~l~l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
..+|. .+.+|+.|+|++|+|+.+| .|..+..|..|+|++|+|+...
T Consensus 415 ssIP~-l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 415 TSLPM-LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCCCc-chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchH
Confidence 88863 2457889999999999998 6889999999999999997543
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=1.4e-16 Score=158.77 Aligned_cols=197 Identities=20% Similarity=0.231 Sum_probs=136.9
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccc-cCCCccEEEecC-CCcCccCccccCCCCCCcEEEccC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRD 305 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~-~l~~L~~LdLs~-N~i~~l~~~~l~~l~~L~~L~Ls~ 305 (428)
-.++|..|.|..|....|..+++|+.|||++|+|..|....| .+..+..|-+.+ |+|+.++-..|.++..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 457999999999999999999999999999999998855443 566666654444 888887766666665555554444
Q ss_pred CCCC------------------------CCc--cccCCCcccEEEccCCCCCC---------------------------
Q 014262 306 NMLS------------------------TLE--GIEILTRVKVLDLSFNDFKG--------------------------- 332 (428)
Q Consensus 306 N~Ls------------------------~lp--~l~~L~~L~~LdLs~N~L~~--------------------------- 332 (428)
|+|. .+. .|..+..++.|.+..|.+..
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 4444 432 14444455555544444100
Q ss_pred ----------------------------------CC-CCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCc
Q 014262 333 ----------------------------------PG-FEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNK 375 (428)
Q Consensus 333 ----------------------------------~~-p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~ 375 (428)
+. ...|..|++|+.|+|++|+|+.+ .+|..+..|++|.|..|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 00 01134467888888888888887 367788888888888888
Q ss_pred CCcc---ccCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCccc
Q 014262 376 LKSI---AMASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 376 L~~l---~l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
|..+ .|.++..|+.|+|.+|+|+.+. .|..+..|..|+|-.|+| |.|++
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 8777 3778888888888888888763 577788888888888887 66654
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=1.1e-14 Score=160.12 Aligned_cols=179 Identities=20% Similarity=0.199 Sum_probs=99.3
Q ss_pred CcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 229 GLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
.|.+.+|.+..+....+ .+|++|+|.+|.|..||..+ ...|+.|+|++|.|..++.. + ..+|++|+|++|+|
T Consensus 203 ~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~-l--~s~L~~L~Ls~N~L 274 (754)
T PRK15370 203 TLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPER-L--PSALQSLDLFHNKI 274 (754)
T ss_pred EEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChh-H--hCCCCEEECcCCcc
Confidence 45666666665554333 36777777777777777655 34677777777777765432 2 24677777777777
Q ss_pred CCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccccCCCCCcc
Q 014262 309 STLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQ 388 (428)
Q Consensus 309 s~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L~ 388 (428)
..+|.. .+.+|++|+|++|+|.. +|..+. ..|+.|+|.+|.|..++.. ..++|+.|++.+|.|+.++..-.++|+
T Consensus 275 ~~LP~~-l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~LP~~l~~sL~ 349 (754)
T PRK15370 275 SCLPEN-LPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTSLPASLPPELQ 349 (754)
T ss_pred Cccccc-cCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCcc-ccccceeccccCCccccCChhhcCccc
Confidence 766541 12467777777777765 333222 2455555555555544321 113455555555555555422234555
Q ss_pred EEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCc
Q 014262 389 VLAASKNKISTLKG-FPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 389 ~L~Ls~N~Lt~lp~-l~~L~~L~~L~Ls~N~I~~~ 422 (428)
.|+|++|+|..+|. + .+.|++|+|.+|.|..+
T Consensus 350 ~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 350 VLDVSKNQITVLPETL--PPTITTLDVSRNALTNL 382 (754)
T ss_pred EEECCCCCCCcCChhh--cCCcCEEECCCCcCCCC
Confidence 55555555555442 2 13455555555555443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=2.5e-16 Score=170.01 Aligned_cols=190 Identities=23% Similarity=0.191 Sum_probs=100.4
Q ss_pred ccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCC
Q 014262 231 RNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST 310 (428)
Q Consensus 231 ~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~ 310 (428)
.+.++....+. .-...+.++..++..+|.|..+|..++....|+.|++.+|.+..+++. +..+..|++|+|..|+|..
T Consensus 247 dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 247 DISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred ecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeehhccccc
Confidence 44444444444 333444555555555555555555555445555555555555544332 3334555555555554444
Q ss_pred Ccc-------------------------c--cCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCC
Q 014262 311 LEG-------------------------I--EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLP 361 (428)
Q Consensus 311 lp~-------------------------l--~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~ 361 (428)
+|. + ..+..|+.|+|.+|.|.+.....|.++.+|+.|+|++|+|..+| .+.
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~ 404 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR 404 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh
Confidence 321 0 01234444555555555444444555555555555555555553 344
Q ss_pred CCCCCCEEEcCCCcCCc-----------------------cc-cCCCCCccEEEccCCCCCCC--CCCCCCCCCcEEEcc
Q 014262 362 ELPNLEFLSVAQNKLKS-----------------------IA-MASQPRLQVLAASKNKISTL--KGFPHLPLLEVSILC 415 (428)
Q Consensus 362 ~L~~L~~L~Ls~N~L~~-----------------------l~-l~~L~~L~~L~Ls~N~Lt~l--p~l~~L~~L~~L~Ls 415 (428)
++..|++|+|++|+|+. +| +..+++|+.|||+.|+|..+ +.....++|++|||.
T Consensus 405 kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeecc
Confidence 45555555555555444 43 55677888888888888774 333333788888888
Q ss_pred CCCCCCc
Q 014262 416 IARICIA 422 (428)
Q Consensus 416 ~N~I~~~ 422 (428)
||....+
T Consensus 485 GN~~l~~ 491 (1081)
T KOG0618|consen 485 GNTRLVF 491 (1081)
T ss_pred CCccccc
Confidence 8875433
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=3.2e-16 Score=156.12 Aligned_cols=177 Identities=22% Similarity=0.222 Sum_probs=112.6
Q ss_pred CceeeeCCCCceecccccc-cCCCccEEEecCCCcCccCccccCCCCCCcEEEccC-CCCCCCcc--ccCCCcccEE---
Q 014262 251 AGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRD-NMLSTLEG--IEILTRVKVL--- 323 (428)
Q Consensus 251 L~~L~L~~n~L~~LP~~~~-~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~-N~Ls~lp~--l~~L~~L~~L--- 323 (428)
...++|+.|+|..||+..| .+..|+.|||++|+|..|.++.|.++..|..|.+.+ |+|+.++. |.+|..|+-|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 3556777777777776555 556777777777777777777777777766666655 66776642 4443333333
Q ss_pred ---------------------EccCCCCCCCCCCCCCCCCCCcEEEccCCcCC---------------------------
Q 014262 324 ---------------------DLSFNDFKGPGFEPLENCKALQQLYLAGNQIT--------------------------- 355 (428)
Q Consensus 324 ---------------------dLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt--------------------------- 355 (428)
.|.+|.+..+.-..|..+..++.+.+..|.+-
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 33333333322223444444444444433200
Q ss_pred ---------------------CC--------------C--CCCCCCCCCEEEcCCCcCCcc---ccCCCCCccEEEccCC
Q 014262 356 ---------------------SL--------------G--SLPELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASKN 395 (428)
Q Consensus 356 ---------------------~l--------------~--~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L~Ls~N 395 (428)
++ | .|..+++|+.|+|++|+|+.+ .|.++..|++|+|..|
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 00 0 244678888888888888888 3788888888888888
Q ss_pred CCCCCC--CCCCCCCCcEEEccCCCCCCcccccc
Q 014262 396 KISTLK--GFPHLPLLEVSILCIARICIAHLLIV 427 (428)
Q Consensus 396 ~Lt~lp--~l~~L~~L~~L~Ls~N~I~~~~l~~l 427 (428)
+|..+. .|.++..|+.|+|.+|+|+.+....+
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 888875 58888899999999999876644433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=6.2e-14 Score=154.04 Aligned_cols=154 Identities=25% Similarity=0.231 Sum_probs=100.2
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
|.+.++.+..+... +. .+++.|++.+|+|..||.. +.+|++|+|.+|+|+.++. ..++|+.|+|.+|.|.
T Consensus 206 LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 206 LNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT 275 (788)
T ss_pred EEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccC----cccccceeeccCCchh
Confidence 34444444444332 11 3567777878887777753 5677788888887776643 2357777888888777
Q ss_pred CCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccccCCCCCccE
Q 014262 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQV 389 (428)
Q Consensus 310 ~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L~~ 389 (428)
.++.+ +..|+.|+|.+|+|.. +|. .+++|+.|+|++|+|..++.+ ...|+.|++.+|.|..+|- ...+|++
T Consensus 276 ~Lp~l--p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~-lp~~Lq~ 346 (788)
T PRK15387 276 HLPAL--PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPT-LPSGLQE 346 (788)
T ss_pred hhhhc--hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCCC--cccccccccccCccccccc-cccccce
Confidence 77642 3567788888888776 333 246788888888888887642 2346666777777766641 1246777
Q ss_pred EEccCCCCCCCCC
Q 014262 390 LAASKNKISTLKG 402 (428)
Q Consensus 390 L~Ls~N~Lt~lp~ 402 (428)
|+|++|+|+.+|.
T Consensus 347 LdLS~N~Ls~LP~ 359 (788)
T PRK15387 347 LSVSDNQLASLPT 359 (788)
T ss_pred EecCCCccCCCCC
Confidence 7777777777653
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=5.5e-14 Score=154.66 Aligned_cols=179 Identities=22% Similarity=0.233 Sum_probs=138.0
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.++.+..+...- ...++.|++.+|+|..+|..+ +.+|++|+|.+|.|..++.. + ..+|+.|+|++|+|.
T Consensus 183 L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 183 LRLKILGLTTIPACI---PEQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTSIPAT-L--PDTIQEMELSINRIT 254 (754)
T ss_pred EEeCCCCcCcCCccc---ccCCcEEEecCCCCCcCChhh--ccCCCEEECCCCccccCChh-h--hccccEEECcCCccC
Confidence 455555554443321 246888999999999998877 46899999999999877543 3 347999999999999
Q ss_pred CCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccccCCCCCccE
Q 014262 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQV 389 (428)
Q Consensus 310 ~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L~~ 389 (428)
.+|.. ...+|++|+|++|+|.. +|..+. .+|+.|+|++|+|+.++.. ....|+.|+|.+|.|..++.....+|+.
T Consensus 255 ~LP~~-l~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~ 329 (754)
T PRK15370 255 ELPER-LPSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAH-LPSGITHLNVQSNSLTALPETLPPGLKT 329 (754)
T ss_pred cCChh-HhCCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCccc-chhhHHHHHhcCCccccCCcccccccee
Confidence 88742 23579999999999986 565553 5899999999999988631 1247899999999999887555688999
Q ss_pred EEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCcc
Q 014262 390 LAASKNKISTLKG-FPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 390 L~Ls~N~Lt~lp~-l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
|++.+|.|+.+|. + .++|+.|+|.+|+|..++
T Consensus 330 L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP 362 (754)
T PRK15370 330 LEAGENALTSLPASL--PPELQVLDVSKNQITVLP 362 (754)
T ss_pred ccccCCccccCChhh--cCcccEEECCCCCCCcCC
Confidence 9999999999873 4 368999999999998655
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=3.3e-16 Score=169.05 Aligned_cols=172 Identities=25% Similarity=0.262 Sum_probs=143.2
Q ss_pred CCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc-ccCCCcccEEEccC
Q 014262 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG-IEILTRVKVLDLSF 327 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~-l~~L~~L~~LdLs~ 327 (428)
.+++++++.++++..+|.++..+.+|+.|++.+|+|..++. .+..+..|++|.+.+|.+..+|. ..++..|++|||..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~-ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPL-RISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHH-HHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 57899999999999999999999999999999999976644 46668899999999999999976 55599999999999
Q ss_pred CCCCCCCCCCC-------------------------CCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcCCccc
Q 014262 328 NDFKGPGFEPL-------------------------ENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSIA 380 (428)
Q Consensus 328 N~L~~~~p~~l-------------------------~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L~~l~ 380 (428)
|+|....+..| ..+..|+.|+|.+|.|++- |.|.++.+|+.|+|++|+|..+|
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 99976322111 1235689999999999874 78999999999999999999996
Q ss_pred ---cCCCCCccEEEccCCCCCCC-----------------------CCCCCCCCCcEEEccCCCCCC
Q 014262 381 ---MASQPRLQVLAASKNKISTL-----------------------KGFPHLPLLEVSILCIARICI 421 (428)
Q Consensus 381 ---l~~L~~L~~L~Ls~N~Lt~l-----------------------p~l~~L~~L~~L~Ls~N~I~~ 421 (428)
+.+|..|++|+|++|+|+.+ |++..++.|+.|||+.|+|..
T Consensus 400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhh
Confidence 88889999999999998754 445566777777777777643
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.43 E-value=3.9e-15 Score=153.96 Aligned_cols=177 Identities=27% Similarity=0.214 Sum_probs=155.7
Q ss_pred CCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc-ccCCCcccEEE
Q 014262 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG-IEILTRVKVLD 324 (428)
Q Consensus 246 s~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~-l~~L~~L~~Ld 324 (428)
.++.-...+|++.|++.++|..+..+..|+.|.|.+|.|..++. .++++..|++|||+.|++..+|. ++.| -|+.|.
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLI 149 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchhhcCChhhhcC-cceeEE
Confidence 34445577899999999999999888999999999999998754 58899999999999999999975 5555 499999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCccc--cCCCCCccEEEccCCCCCCCC
Q 014262 325 LSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSIA--MASQPRLQVLAASKNKISTLK 401 (428)
Q Consensus 325 Ls~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp 401 (428)
+++|++.. +|+.++.+..|..||.+.|.|..++ .++++..|+.|++..|++..+| +.. -.|..||+++|+|..||
T Consensus 150 ~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 150 VSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLP 227 (722)
T ss_pred EecCcccc-CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecc
Confidence 99999987 7888889999999999999999995 7999999999999999999996 553 35889999999999999
Q ss_pred -CCCCCCCCcEEEccCCCCCCccccc
Q 014262 402 -GFPHLPLLEVSILCIARICIAHLLI 426 (428)
Q Consensus 402 -~l~~L~~L~~L~Ls~N~I~~~~l~~ 426 (428)
.|.+|.+|++|-|.+|+++..++.+
T Consensus 228 v~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred hhhhhhhhheeeeeccCCCCCChHHH
Confidence 8999999999999999998877654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=4.2e-14 Score=139.42 Aligned_cols=180 Identities=23% Similarity=0.158 Sum_probs=134.0
Q ss_pred CCCCCCCCceeeeCCCCce-ecccccccCCC---ccEEEecCCCcCc----cCccccCCC-CCCcEEEccCCCCCCC---
Q 014262 244 NLSGQRRAGTPQSKDSRFI-VLPQVEIKAGD---DVRLDLRGHRVRS----LIASGLNLQ-PNLEFVYLRDNMLSTL--- 311 (428)
Q Consensus 244 ~fs~l~~L~~L~L~~n~L~-~LP~~~~~l~~---L~~LdLs~N~i~~----l~~~~l~~l-~~L~~L~Ls~N~Ls~l--- 311 (428)
.|..+.+++.|++.++.+. ..+..+..+.. |++|+|.+|++.+ .....+..+ ++|+.|+|.+|.|+..
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 3455678999999999887 33333333444 9999999999874 222335566 8999999999998842
Q ss_pred ---ccccCCCcccEEEccCCCCCCC----CCCCCCCCCCCcEEEccCCcCCCC------CCCCCCCCCCEEEcCCCcCCc
Q 014262 312 ---EGIEILTRVKVLDLSFNDFKGP----GFEPLENCKALQQLYLAGNQITSL------GSLPELPNLEFLSVAQNKLKS 378 (428)
Q Consensus 312 ---p~l~~L~~L~~LdLs~N~L~~~----~p~~l~~L~~L~~L~Ls~N~Lt~l------~~l~~L~~L~~L~Ls~N~L~~ 378 (428)
..+..+.+|++|+|.+|.+.+. ++..+..+++|++|+|++|.|.+. ..+..+++|++|+|++|.+.+
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 1366778999999999998852 223445667999999999998754 246778899999999999986
Q ss_pred cc--------cCCCCCccEEEccCCCCCC-----C-CCCCCCCCCcEEEccCCCCCCcc
Q 014262 379 IA--------MASQPRLQVLAASKNKIST-----L-KGFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 379 l~--------l~~L~~L~~L~Ls~N~Lt~-----l-p~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
.. ......|++|++.+|.|++ + ..+..+++|++|++++|.+...+
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 41 1134789999999999974 1 24566689999999999987553
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.41 E-value=5.5e-14 Score=128.99 Aligned_cols=131 Identities=32% Similarity=0.446 Sum_probs=44.7
Q ss_pred CCCceecccccccCCCccEEEecCCCcCccCccccC-CCCCCcEEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCC
Q 014262 258 DSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLN-LQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFE 336 (428)
Q Consensus 258 ~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~-~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~ 336 (428)
.+.+..++... ++..+++|+|.+|.|..+.. +. .+.+|+.|+|++|.|+.++++..+++|++|+|++|+|..+..
T Consensus 6 ~~~i~~~~~~~-n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~- 81 (175)
T PF14580_consen 6 ANMIEQIAQYN-NPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE- 81 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-
T ss_pred ccccccccccc-cccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-
Confidence 33444444443 34567788888888877643 44 467788888888888888878788888888888888876432
Q ss_pred CC-CCCCCCcEEEccCCcCCCCC---CCCCCCCCCEEEcCCCcCCccc------cCCCCCccEEEc
Q 014262 337 PL-ENCKALQQLYLAGNQITSLG---SLPELPNLEFLSVAQNKLKSIA------MASQPRLQVLAA 392 (428)
Q Consensus 337 ~l-~~L~~L~~L~Ls~N~Lt~l~---~l~~L~~L~~L~Ls~N~L~~l~------l~~L~~L~~L~L 392 (428)
.+ ..|++|+.|+|.+|+|..+. .+..+++|+.|+|.+|.+...+ +..+++|+.||-
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 33 35778888888888887764 4556777888888887776542 556677777764
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.40 E-value=3.2e-14 Score=137.92 Aligned_cols=177 Identities=21% Similarity=0.236 Sum_probs=122.2
Q ss_pred CCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCcc---Cc--------------------cccCCCCCCcE
Q 014262 244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSL---IA--------------------SGLNLQPNLEF 300 (428)
Q Consensus 244 ~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l---~~--------------------~~l~~l~~L~~ 300 (428)
++..+++|+.+.++++.-..|-+....-+.|+.|..++..+... .| ..+..+..|+.
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred chHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 33444555555555555444443333345566666555444321 01 11223467888
Q ss_pred EEccCCCCCCCcc-ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCc
Q 014262 301 VYLRDNMLSTLEG-IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKS 378 (428)
Q Consensus 301 L~Ls~N~Ls~lp~-l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~ 378 (428)
|||++|.|+.+++ +.-++.++.|++++|.|..+ +.+..|.+|+.|||++|.++.+. +-..+-+++.|.|.+|.|..
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh
Confidence 8888888888854 66778888888888888753 35778888888888888888874 44667788888888888888
Q ss_pred c-ccCCCCCccEEEccCCCCCCCC---CCCCCCCCcEEEccCCCCCCc
Q 014262 379 I-AMASQPRLQVLAASKNKISTLK---GFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 379 l-~l~~L~~L~~L~Ls~N~Lt~lp---~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
+ .++.+-.|..||+.+|+|..++ .++++|-|++|.|.+|+|...
T Consensus 367 LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 367 LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8 5788888888888888888764 578888888888888887543
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.39 E-value=2.2e-13 Score=139.52 Aligned_cols=175 Identities=28% Similarity=0.271 Sum_probs=151.7
Q ss_pred CCCCCCceeeeCCCCceecccccccCC-CccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcccc-CCCcccEE
Q 014262 246 SGQRRAGTPQSKDSRFIVLPQVEIKAG-DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIE-ILTRVKVL 323 (428)
Q Consensus 246 s~l~~L~~L~L~~n~L~~LP~~~~~l~-~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~-~L~~L~~L 323 (428)
..+..+..+++.++.+..|+.....+. +|+.|++.+|++..+. ..+..+++|+.|++.+|+|..++... .+..|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 334678999999999999999887664 9999999999999884 23889999999999999999998755 89999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEEccCCc-CCCCCCCCCCCCCCEEEcCCCcCCcc--ccCCCCCccEEEccCCCCCCC
Q 014262 324 DLSFNDFKGPGFEPLENCKALQQLYLAGNQ-ITSLGSLPELPNLEFLSVAQNKLKSI--AMASQPRLQVLAASKNKISTL 400 (428)
Q Consensus 324 dLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~-Lt~l~~l~~L~~L~~L~Ls~N~L~~l--~l~~L~~L~~L~Ls~N~Lt~l 400 (428)
++++|+|.. +|..+..+..|++|++.+|. +..+..+..+.+|..|.+.+|++..+ .+..+..|+.|++++|.|..+
T Consensus 192 ~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 192 DLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred eccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence 999999998 55555566679999999995 55556788999999999999999884 588889999999999999999
Q ss_pred CCCCCCCCCcEEEccCCCCCCc
Q 014262 401 KGFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 401 p~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
+.+..+.+|++|++++|.+...
T Consensus 271 ~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 271 SSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccCccCEEeccCcccccc
Confidence 9899999999999999987544
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=4.2e-13 Score=123.16 Aligned_cols=121 Identities=35% Similarity=0.465 Sum_probs=43.2
Q ss_pred cCCCCCCcEEEccCCCCCCCcccc-CCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC-CC-CCCCCCCE
Q 014262 292 LNLQPNLEFVYLRDNMLSTLEGIE-ILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG-SL-PELPNLEF 368 (428)
Q Consensus 292 l~~l~~L~~L~Ls~N~Ls~lp~l~-~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l-~~L~~L~~ 368 (428)
+.+...+++|+|.+|.|+.++.+. .+.+|+.|+|++|.|..+ +.|..+.+|+.|+|++|.|+.+. .+ ..+++|+.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 445556778888888888777665 467788888888887763 35667777888888888887774 33 35777778
Q ss_pred EEcCCCcCCcc----ccCCCCCccEEEccCCCCCCCCC-----CCCCCCCcEEEc
Q 014262 369 LSVAQNKLKSI----AMASQPRLQVLAASKNKISTLKG-----FPHLPLLEVSIL 414 (428)
Q Consensus 369 L~Ls~N~L~~l----~l~~L~~L~~L~Ls~N~Lt~lp~-----l~~L~~L~~L~L 414 (428)
|+|.+|+|..+ .+..+++|+.|+|.+|.+..-+. +..+|+|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88877777765 36667777777777777776542 456677776654
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=9.6e-12 Score=143.93 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=62.9
Q ss_pred CcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCC-cCCCCCCCCCCCCCCEEEcCCCc-CCccccCCCCCccEEEccCC
Q 014262 318 TRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGN-QITSLGSLPELPNLEFLSVAQNK-LKSIAMASQPRLQVLAASKN 395 (428)
Q Consensus 318 ~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N-~Lt~l~~l~~L~~L~~L~Ls~N~-L~~l~l~~L~~L~~L~Ls~N 395 (428)
++|+.|+|++|.....+|..+.+|++|+.|+|.+| .+..+|....+++|+.|+|++|. +..++ ....+|+.|+|.+|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p-~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP-DISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc-ccccccCEeECCCC
Confidence 45667777777666667777888888888888775 45666544466667777776653 22222 22345666666666
Q ss_pred CCCCCC-CCCCCCCCcEEEccC
Q 014262 396 KISTLK-GFPHLPLLEVSILCI 416 (428)
Q Consensus 396 ~Lt~lp-~l~~L~~L~~L~Ls~ 416 (428)
.|+.+| .+..+++|+.|+|.+
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCC
Confidence 666666 466666666666665
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=1.5e-13 Score=135.55 Aligned_cols=172 Identities=23% Similarity=0.154 Sum_probs=104.2
Q ss_pred CCCceeeeCCCCcee-------cccccccCCCccEEEecCCCcCccCccccCCCCC---CcEEEccCCCCCCC------c
Q 014262 249 RRAGTPQSKDSRFIV-------LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPN---LEFVYLRDNMLSTL------E 312 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~-------LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~---L~~L~Ls~N~Ls~l------p 312 (428)
..++++++.++.+.. ++..+..+.+|++|+|.+|.+.+..+..|..+.. |++|+|++|.+... .
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 345666666655442 2223334567777777777776544444433333 77777777776632 1
Q ss_pred cccCC-CcccEEEccCCCCCCC----CCCCCCCCCCCcEEEccCCcCCCC------CCCCCCCCCCEEEcCCCcCCcc--
Q 014262 313 GIEIL-TRVKVLDLSFNDFKGP----GFEPLENCKALQQLYLAGNQITSL------GSLPELPNLEFLSVAQNKLKSI-- 379 (428)
Q Consensus 313 ~l~~L-~~L~~LdLs~N~L~~~----~p~~l~~L~~L~~L~Ls~N~Lt~l------~~l~~L~~L~~L~Ls~N~L~~l-- 379 (428)
.+..+ ++|++|+|.+|.|.+. +...+..+.+|++|+|.+|.|.+. ..+..+++|++|+|++|.|.+.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 23445 6777777777777631 233455566777777777777642 1234456777888877777644
Q ss_pred -----ccCCCCCccEEEccCCCCCCC--CCC-----CCCCCCcEEEccCCCCC
Q 014262 380 -----AMASQPRLQVLAASKNKISTL--KGF-----PHLPLLEVSILCIARIC 420 (428)
Q Consensus 380 -----~l~~L~~L~~L~Ls~N~Lt~l--p~l-----~~L~~L~~L~Ls~N~I~ 420 (428)
.+..+++|++|++++|.+++. ..+ .....|++|++.+|.|.
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 145667788888888877752 111 12467788888888775
No 27
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.33 E-value=1.7e-13 Score=141.88 Aligned_cols=176 Identities=28% Similarity=0.317 Sum_probs=109.4
Q ss_pred CCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEE
Q 014262 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD 324 (428)
Q Consensus 245 fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~Ld 324 (428)
+..+..+..|++.+|.|..+...+..+.+|++|+|++|.|..+.. +..+..|+.|++.+|.|..+..+..+..|+.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCccchhhhccc
Confidence 555556666666666666655534446666666666666666654 555556666666666666666666666666666
Q ss_pred ccCCCCCCCCC-CCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCcc-ccCCCCC--ccEEEccCCCCCCC
Q 014262 325 LSFNDFKGPGF-EPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI-AMASQPR--LQVLAASKNKISTL 400 (428)
Q Consensus 325 Ls~N~L~~~~p-~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l-~l~~L~~--L~~L~Ls~N~Lt~l 400 (428)
+++|++..+-. . +..+..|+.|++.+|.|..+..+..+..+..+++..|.|..+ ++..+.. |+.|++.+|.+..+
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc
Confidence 66666665332 1 355566666666666666655555555555555555655555 3444443 77778888887777
Q ss_pred -CCCCCCCCCcEEEccCCCCCCcc
Q 014262 401 -KGFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 401 -p~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
..+..+..+..|++..|++....
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred cccccccccccccchhhccccccc
Confidence 56777777777777777765443
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.33 E-value=1e-13 Score=134.41 Aligned_cols=130 Identities=24% Similarity=0.320 Sum_probs=117.8
Q ss_pred CCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 014262 271 AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLA 350 (428)
Q Consensus 271 l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls 350 (428)
+..|++|||++|.|+.+.. .+..++.++.|++++|.|..+..+..+.+|++|||++|.+.. +..+-..|.|++.|+|.
T Consensus 283 Wq~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccchhhhhh-hhhhccceeEEeccccceeeehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 5678999999999998754 477889999999999999999999999999999999999886 44455678999999999
Q ss_pred CCcCCCCCCCCCCCCCCEEEcCCCcCCcc----ccCCCCCccEEEccCCCCCCCCC
Q 014262 351 GNQITSLGSLPELPNLEFLSVAQNKLKSI----AMASQPRLQVLAASKNKISTLKG 402 (428)
Q Consensus 351 ~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l----~l~~L~~L~~L~Ls~N~Lt~lp~ 402 (428)
+|.|..+..+..+..|..||+.+|+|..+ .+++++.|++|.|.+|.|..+++
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 99999999999999999999999999988 49999999999999999998753
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.31 E-value=1.7e-11 Score=141.89 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=115.8
Q ss_pred CCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC-CCCCccccCCCcccEEEccCC
Q 014262 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LSTLEGIEILTRVKVLDLSFN 328 (428)
Q Consensus 250 ~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~-Ls~lp~l~~L~~L~~LdLs~N 328 (428)
+|+.|++.++.+..+|..+ .+.+|++|+|.+|.|..+. ..+..+++|++|+|++|. +..+|.+..+++|++|+|.+|
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLW-DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccc-cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 4677777777777777765 4678888888888887654 346778888888888764 677788888888888888888
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCC-cCCCCCCCCCCCCCCEEEcCCCcC-CccccCCCCCccEEEccCCCCCCCCCCCCC
Q 014262 329 DFKGPGFEPLENCKALQQLYLAGN-QITSLGSLPELPNLEFLSVAQNKL-KSIAMASQPRLQVLAASKNKISTLKGFPHL 406 (428)
Q Consensus 329 ~L~~~~p~~l~~L~~L~~L~Ls~N-~Lt~l~~l~~L~~L~~L~Ls~N~L-~~l~l~~L~~L~~L~Ls~N~Lt~lp~l~~L 406 (428)
.....+|..+.++.+|+.|+|.+| .+..++...++.+|+.|+|.+|.. ..++ ....+|+.|+|.+|.|..+|....+
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p-~~~~nL~~L~L~~n~i~~lP~~~~l 746 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP-DISTNISWLDLDETAIEEFPSNLRL 746 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc-cccCCcCeeecCCCccccccccccc
Confidence 766667888888888888888875 566676555788888888888743 3333 2346788888888887776643233
Q ss_pred CCCcEE
Q 014262 407 PLLEVS 412 (428)
Q Consensus 407 ~~L~~L 412 (428)
++|.+|
T Consensus 747 ~~L~~L 752 (1153)
T PLN03210 747 ENLDEL 752 (1153)
T ss_pred cccccc
Confidence 333333
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=5.6e-14 Score=145.56 Aligned_cols=179 Identities=25% Similarity=0.280 Sum_probs=153.5
Q ss_pred CCCCCCCCCCceeeeCCCCceecccccc--cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cccCCC
Q 014262 242 SSNLSGQRRAGTPQSKDSRFIVLPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILT 318 (428)
Q Consensus 242 ~~~fs~l~~L~~L~L~~n~L~~LP~~~~--~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~~L~ 318 (428)
+..|+...-...|.|.+.++..+|...+ .+......||+.|++..++. .++.|..|+.|.|++|.|..++ .+.++.
T Consensus 43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~r~ip~~i~~L~ 121 (722)
T KOG0532|consen 43 ERALEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPE-EACAFVSLESLILYHNCIRTIPEAICNLE 121 (722)
T ss_pred hHHHHHHhhhcccccccchhhcCCCccccccccchhhhhccccccccCch-HHHHHHHHHHHHHHhccceecchhhhhhh
Confidence 3455555556678888888988887654 45667789999999998854 4788889999999999999997 599999
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCccc--cCCCCCccEEEccCC
Q 014262 319 RVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSIA--MASQPRLQVLAASKN 395 (428)
Q Consensus 319 ~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N 395 (428)
.|.+|||+.|++.. +|..++.|+ |+.|.+.+|+++.++ .++.+..|..||.+.|.|..++ ++++..|+.|.+..|
T Consensus 122 ~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 122 ALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred HHHHhhhccchhhc-CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence 99999999999987 777888877 999999999999995 7888899999999999999995 899999999999999
Q ss_pred CCCCCC-CCCCCCCCcEEEccCCCCCCccc
Q 014262 396 KISTLK-GFPHLPLLEVSILCIARICIAHL 424 (428)
Q Consensus 396 ~Lt~lp-~l~~L~~L~~L~Ls~N~I~~~~l 424 (428)
++..+| ++..|+ |..||+++|+|..++.
T Consensus 200 ~l~~lp~El~~Lp-Li~lDfScNkis~iPv 228 (722)
T KOG0532|consen 200 HLEDLPEELCSLP-LIRLDFSCNKISYLPV 228 (722)
T ss_pred hhhhCCHHHhCCc-eeeeecccCceeecch
Confidence 999988 788776 9999999999755543
No 31
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.23 E-value=5.8e-13 Score=137.97 Aligned_cols=174 Identities=28% Similarity=0.291 Sum_probs=139.4
Q ss_pred CCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEEc
Q 014262 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL 325 (428)
Q Consensus 246 s~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdL 325 (428)
..+..++.+.++.|.+..+-..+..+..|+.|++.+|.|..+... +..|.+|++|+|++|.|..+.++..+..|+.|++
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccchhhccchhhhee
Confidence 455666777788888877555555678888999999998887553 6678899999999999999888888888999999
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCC--CCCCCCCCEEEcCCCcCCcc-ccCCCCCccEEEccCCCCCCCCC
Q 014262 326 SFNDFKGPGFEPLENCKALQQLYLAGNQITSLGS--LPELPNLEFLSVAQNKLKSI-AMASQPRLQVLAASKNKISTLKG 402 (428)
Q Consensus 326 s~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~--l~~L~~L~~L~Ls~N~L~~l-~l~~L~~L~~L~Ls~N~Lt~lp~ 402 (428)
.+|.|..+ ..|..+..|+.+++++|.+..+.. +..+.+|+.+++.+|.+..+ .+..+..+..+++..|.|..+..
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC
Confidence 99988863 356668888999999999988876 58888899999999988887 46666677777888898888877
Q ss_pred CCCCCC--CcEEEccCCCCCCc
Q 014262 403 FPHLPL--LEVSILCIARICIA 422 (428)
Q Consensus 403 l~~L~~--L~~L~Ls~N~I~~~ 422 (428)
+..+.. |+.|++.+|++...
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred cccchhHHHHHHhcccCccccc
Confidence 666665 89999999998765
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.5e-12 Score=127.01 Aligned_cols=173 Identities=20% Similarity=0.210 Sum_probs=110.4
Q ss_pred CCCCceeeeCCCCceeccc---ccccCCCccEEEecCCCcCccCccc-cCCCCCCcEEEccCCCCCCCc---cccCCCcc
Q 014262 248 QRRAGTPQSKDSRFIVLPQ---VEIKAGDDVRLDLRGHRVRSLIASG-LNLQPNLEFVYLRDNMLSTLE---GIEILTRV 320 (428)
Q Consensus 248 l~~L~~L~L~~n~L~~LP~---~~~~l~~L~~LdLs~N~i~~l~~~~-l~~l~~L~~L~Ls~N~Ls~lp---~l~~L~~L 320 (428)
+.+++.|||++|-|..+-. ..-.+++|+.|+|+.|.+.-..... -..+.+|+.|.|+.|.|+.-. -+..++.|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 4455555555555543322 1224556666666666554322211 123456666666666665321 14557788
Q ss_pred cEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC---CCCCCCCCCEEEcCCCcCCccc---------cCCCCCcc
Q 014262 321 KVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG---SLPELPNLEFLSVAQNKLKSIA---------MASQPRLQ 388 (428)
Q Consensus 321 ~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~---~l~~L~~L~~L~Ls~N~L~~l~---------l~~L~~L~ 388 (428)
+.|+|..|............+..|+.|||++|++-+++ ..+.++.|+.|+++.|.|..+. ...+++|+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 88888887543333344556778888888888887774 5677888888888888888772 24568889
Q ss_pred EEEccCCCCCCCCC---CCCCCCCcEEEccCCCCC
Q 014262 389 VLAASKNKISTLKG---FPHLPLLEVSILCIARIC 420 (428)
Q Consensus 389 ~L~Ls~N~Lt~lp~---l~~L~~L~~L~Ls~N~I~ 420 (428)
+|++..|+|.+++. +..+++|++|.+.+|.|.
T Consensus 305 ~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 305 YLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eeecccCccccccccchhhccchhhhhhccccccc
Confidence 99999999888764 455677788888888774
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=2.2e-11 Score=124.64 Aligned_cols=170 Identities=26% Similarity=0.292 Sum_probs=141.3
Q ss_pred eeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCC-CCcEEEccCCCCCCCc-cccCCCcccEEEccCCCC
Q 014262 253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQP-NLEFVYLRDNMLSTLE-GIEILTRVKVLDLSFNDF 330 (428)
Q Consensus 253 ~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~-~L~~L~Ls~N~Ls~lp-~l~~L~~L~~LdLs~N~L 330 (428)
.+++.++.+......+..+..+..|++.+|.+..+.+. ...+. +|+.|++.+|.|..++ .+..+++|+.|++++|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 57777777744444444567899999999999999774 44453 9999999999999995 799999999999999999
Q ss_pred CCCCCCCCCCCCCCcEEEccCCcCCCCCCC-CCCCCCCEEEcCCCcCCc-c-ccCCCCCccEEEccCCCCCCCC-CCCCC
Q 014262 331 KGPGFEPLENCKALQQLYLAGNQITSLGSL-PELPNLEFLSVAQNKLKS-I-AMASQPRLQVLAASKNKISTLK-GFPHL 406 (428)
Q Consensus 331 ~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l-~~L~~L~~L~Ls~N~L~~-l-~l~~L~~L~~L~Ls~N~Lt~lp-~l~~L 406 (428)
.. ++.....+.+|+.|++++|+|..++.. ..+..|+.|++.+|.+.. + .+..+.++..|.+.+|++..++ .+..+
T Consensus 176 ~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 176 SD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred hh-hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccc
Confidence 98 454555889999999999999999866 466669999999995444 4 4888999999999999999954 68888
Q ss_pred CCCcEEEccCCCCCCccc
Q 014262 407 PLLEVSILCIARICIAHL 424 (428)
Q Consensus 407 ~~L~~L~Ls~N~I~~~~l 424 (428)
..|+.|++.+|.|+..+.
T Consensus 255 ~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 255 SNLETLDLSNNQISSISS 272 (394)
T ss_pred cccceecccccccccccc
Confidence 899999999999988764
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.2e-12 Score=127.69 Aligned_cols=178 Identities=21% Similarity=0.152 Sum_probs=140.0
Q ss_pred CCCCCceeeeCCCCceeccc--ccccCCCccEEEecCCCcCccCc--cccCCCCCCcEEEccCCCCCCCc---cccCCCc
Q 014262 247 GQRRAGTPQSKDSRFIVLPQ--VEIKAGDDVRLDLRGHRVRSLIA--SGLNLQPNLEFVYLRDNMLSTLE---GIEILTR 319 (428)
Q Consensus 247 ~l~~L~~L~L~~n~L~~LP~--~~~~l~~L~~LdLs~N~i~~l~~--~~l~~l~~L~~L~Ls~N~Ls~lp---~l~~L~~ 319 (428)
.+.+|+.+.|+++.+...+. ....+.+++.|||++|-|....+ ....+|++|+.|+|+.|.+...- .-..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45678899999999887764 55578999999999998876433 34577999999999999987652 1346889
Q ss_pred ccEEEccCCCCCCC-CCCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcCCccc----cCCCCCccEEEc
Q 014262 320 VKVLDLSFNDFKGP-GFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSIA----MASQPRLQVLAA 392 (428)
Q Consensus 320 L~~LdLs~N~L~~~-~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L~~l~----l~~L~~L~~L~L 392 (428)
|+.|.|+.|.|... +...+..+++|+.|+|.+|....+ .....+..|+.|||++|++.+++ .+.|+.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 99999999988742 222345679999999999963333 24566788999999999998874 788999999999
Q ss_pred cCCCCCCCC--C------CCCCCCCcEEEccCCCCCCccc
Q 014262 393 SKNKISTLK--G------FPHLPLLEVSILCIARICIAHL 424 (428)
Q Consensus 393 s~N~Lt~lp--~------l~~L~~L~~L~Ls~N~I~~~~l 424 (428)
+.|.|..+. + ...++.|++|++..|+|.+++.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 999999863 2 2568999999999999966543
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.12 E-value=7e-13 Score=140.47 Aligned_cols=125 Identities=27% Similarity=0.335 Sum_probs=66.8
Q ss_pred CccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCC
Q 014262 273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGN 352 (428)
Q Consensus 273 ~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N 352 (428)
.|...++++|.+.-+ ...+..++.|++|||++|+++.+..+..|++|++|||++|.+..+.-.....|. |+.|+|.+|
T Consensus 165 ~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 444555555555433 223555555666666666665555555556666666666655542211222222 555666666
Q ss_pred cCCCCCCCCCCCCCCEEEcCCCcCCcc----ccCCCCCccEEEccCCCCCC
Q 014262 353 QITSLGSLPELPNLEFLSVAQNKLKSI----AMASQPRLQVLAASKNKIST 399 (428)
Q Consensus 353 ~Lt~l~~l~~L~~L~~L~Ls~N~L~~l----~l~~L~~L~~L~Ls~N~Lt~ 399 (428)
.++.+..+.+|.+|+.|||++|-|.+. +++.|..|+.|+|.+|.|-.
T Consensus 243 ~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 243 ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 665555555555566666666555443 45555555555666555544
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.08 E-value=1.1e-12 Score=139.09 Aligned_cols=127 Identities=24% Similarity=0.267 Sum_probs=109.1
Q ss_pred CCCcEEEccCCCCCCCc-cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCC-CCCCEEEcCC
Q 014262 296 PNLEFVYLRDNMLSTLE-GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPEL-PNLEFLSVAQ 373 (428)
Q Consensus 296 ~~L~~L~Ls~N~Ls~lp-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L-~~L~~L~Ls~ 373 (428)
..|...++++|.|.-++ .+..++.|+.|||++|++.... .+..|+.|++|||++|.+..++.+..- ..|..|+|++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 46777888999988886 4888999999999999999743 889999999999999999999865432 2499999999
Q ss_pred CcCCcc-ccCCCCCccEEEccCCCCCCCCC---CCCCCCCcEEEccCCCCCCccc
Q 014262 374 NKLKSI-AMASQPRLQVLAASKNKISTLKG---FPHLPLLEVSILCIARICIAHL 424 (428)
Q Consensus 374 N~L~~l-~l~~L~~L~~L~Ls~N~Lt~lp~---l~~L~~L~~L~Ls~N~I~~~~l 424 (428)
|.++.+ .+.+|.+|+.|||++|-|.+..+ +..|..|..|+|.||+||.-+.
T Consensus 242 N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 242 NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 999998 79999999999999999988654 4556788999999999987654
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=4.1e-11 Score=118.44 Aligned_cols=176 Identities=24% Similarity=0.244 Sum_probs=128.2
Q ss_pred CCCCCCCCceeeeCCCCce-e----cccccccCCCccEEEecCCCcCccCccc-------------cCCCCCCcEEEccC
Q 014262 244 NLSGQRRAGTPQSKDSRFI-V----LPQVEIKAGDDVRLDLRGHRVRSLIASG-------------LNLQPNLEFVYLRD 305 (428)
Q Consensus 244 ~fs~l~~L~~L~L~~n~L~-~----LP~~~~~l~~L~~LdLs~N~i~~l~~~~-------------l~~l~~L~~L~Ls~ 305 (428)
.+.++.+|++|+|++|-|. . +-..+..+..|++|+|.+|.|....... ...-+.|+.+.+.+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 3445567888888888776 2 2223336778888888888876432222 23346888888888
Q ss_pred CCCCCCc------cccCCCcccEEEccCCCCCCC----CCCCCCCCCCCcEEEccCCcCCCCC------CCCCCCCCCEE
Q 014262 306 NMLSTLE------GIEILTRVKVLDLSFNDFKGP----GFEPLENCKALQQLYLAGNQITSLG------SLPELPNLEFL 369 (428)
Q Consensus 306 N~Ls~lp------~l~~L~~L~~LdLs~N~L~~~----~p~~l~~L~~L~~L~Ls~N~Lt~l~------~l~~L~~L~~L 369 (428)
|++..-+ .|...+.|+.+.+..|.|... +...|..|++|+.|||+.|.|+... .+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 8887753 266678888888888887642 2345778899999999999888652 57778889999
Q ss_pred EcCCCcCCccc--------cCCCCCccEEEccCCCCCC-----CC-CCCCCCCCcEEEccCCCC
Q 014262 370 SVAQNKLKSIA--------MASQPRLQVLAASKNKIST-----LK-GFPHLPLLEVSILCIARI 419 (428)
Q Consensus 370 ~Ls~N~L~~l~--------l~~L~~L~~L~Ls~N~Lt~-----lp-~l~~L~~L~~L~Ls~N~I 419 (428)
++++|.+..-. -...+.|+.|.|.+|.|+. +. .+...+.|..|+|++|++
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999887641 2347889999999999886 22 455688899999999998
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.77 E-value=1.1e-08 Score=111.43 Aligned_cols=102 Identities=25% Similarity=0.362 Sum_probs=67.0
Q ss_pred ccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCC-Cc-cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccC
Q 014262 274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST-LE-GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAG 351 (428)
Q Consensus 274 L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~-lp-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~ 351 (428)
++.|+|.+|.+.+..+..|..+++|+.|+|++|.|.+ +| .+..+++|+.|+|++|.|.+.+|+.+.+|++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5667777777777666667777777777777777764 34 366777777777777777776777777777777777777
Q ss_pred CcCCCC-C-CCCC-CCCCCEEEcCCCc
Q 014262 352 NQITSL-G-SLPE-LPNLEFLSVAQNK 375 (428)
Q Consensus 352 N~Lt~l-~-~l~~-L~~L~~L~Ls~N~ 375 (428)
|.|.+. | .+.. +.++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 776643 3 2222 2345556666553
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=7.1e-09 Score=78.26 Aligned_cols=57 Identities=28% Similarity=0.408 Sum_probs=29.1
Q ss_pred CccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccCCC
Q 014262 273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFND 329 (428)
Q Consensus 273 ~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N~ 329 (428)
+|++|+|.+|+|..+.+..|.++++|++|+|++|.|..++. |.++++|++|+|++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555555555555555555555555555554431 4444555555554444
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.74 E-value=1.9e-09 Score=106.83 Aligned_cols=174 Identities=21% Similarity=0.230 Sum_probs=130.3
Q ss_pred CCCCceeeeCCCC----ceecccc-------cccCCCccEEEecCCCcCccCccc----cCCCCCCcEEEccCCCCCCCc
Q 014262 248 QRRAGTPQSKDSR----FIVLPQV-------EIKAGDDVRLDLRGHRVRSLIASG----LNLQPNLEFVYLRDNMLSTLE 312 (428)
Q Consensus 248 l~~L~~L~L~~n~----L~~LP~~-------~~~l~~L~~LdLs~N~i~~l~~~~----l~~l~~L~~L~Ls~N~Ls~lp 312 (428)
.+.|+.+++.+-- ..++|.. +..+++|++|||++|.|..-.... +..+..|++|+|.+|.|....
T Consensus 57 ~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a 136 (382)
T KOG1909|consen 57 KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA 136 (382)
T ss_pred cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH
Confidence 3455666554432 2244443 335679999999999987544332 456789999999999887641
Q ss_pred ---------------cccCCCcccEEEccCCCCCCCC----CCCCCCCCCCcEEEccCCcCCCC------CCCCCCCCCC
Q 014262 313 ---------------GIEILTRVKVLDLSFNDFKGPG----FEPLENCKALQQLYLAGNQITSL------GSLPELPNLE 367 (428)
Q Consensus 313 ---------------~l~~L~~L~~LdLs~N~L~~~~----p~~l~~L~~L~~L~Ls~N~Lt~l------~~l~~L~~L~ 367 (428)
-+..-++|+++++.+|++.... ...|..++.|+.+.+..|.|..- ..|..+++|+
T Consensus 137 g~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le 216 (382)
T KOG1909|consen 137 GGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE 216 (382)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce
Confidence 1445689999999999987632 33466778999999999998754 2688999999
Q ss_pred EEEcCCCcCCcc-------ccCCCCCccEEEccCCCCCCC------CCC-CCCCCCcEEEccCCCCCC
Q 014262 368 FLSVAQNKLKSI-------AMASQPRLQVLAASKNKISTL------KGF-PHLPLLEVSILCIARICI 421 (428)
Q Consensus 368 ~L~Ls~N~L~~l-------~l~~L~~L~~L~Ls~N~Lt~l------p~l-~~L~~L~~L~Ls~N~I~~ 421 (428)
.|||++|-|+.- .+..|++|+.|++++|.+..- ..| ...+.|+.|+|.+|.|+.
T Consensus 217 vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 217 VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred eeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 999999998864 477788999999999999872 222 237899999999999864
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=5.2e-09 Score=79.02 Aligned_cols=59 Identities=31% Similarity=0.420 Sum_probs=37.8
Q ss_pred CCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcC
Q 014262 296 PNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQI 354 (428)
Q Consensus 296 ~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~L 354 (428)
++|++|+|.+|+|..++ .|..+++|++|+|++|.|..+.+..|.++++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35666666666666664 256666666666666666665566666666666666666654
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.71 E-value=2.1e-08 Score=109.24 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=93.5
Q ss_pred CCceeeeCCCCce-ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCC-Ccc-ccCCCcccEEEcc
Q 014262 250 RAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST-LEG-IEILTRVKVLDLS 326 (428)
Q Consensus 250 ~L~~L~L~~n~L~-~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~-lp~-l~~L~~L~~LdLs 326 (428)
.+..|+|.+|++. .+|..+..+.+|+.|+|++|.|.+..|..|..+++|+.|+|++|+|.+ +|. +..|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3678899999998 788888899999999999999999989889999999999999999996 454 8999999999999
Q ss_pred CCCCCCCCCCCCCCC-CCCcEEEccCCcC
Q 014262 327 FNDFKGPGFEPLENC-KALQQLYLAGNQI 354 (428)
Q Consensus 327 ~N~L~~~~p~~l~~L-~~L~~L~Ls~N~L 354 (428)
+|.|.+.+|..+..+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 999999999888764 5678899998864
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.70 E-value=2e-08 Score=93.15 Aligned_cols=119 Identities=28% Similarity=0.381 Sum_probs=75.7
Q ss_pred ccEEEecCCCcCccCccccC-CCCCCcEEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCC
Q 014262 274 DVRLDLRGHRVRSLIASGLN-LQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGN 352 (428)
Q Consensus 274 L~~LdLs~N~i~~l~~~~l~-~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N 352 (428)
-++++|++.+|..+.. ++ .+.+...+||.+|.|..++.|..+++|.+|.|++|+|..+.|..-..+++|+.|.|.+|
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 3455666555544332 11 12355667777777777777777777777777777777665555555666777777777
Q ss_pred cCCCCC---CCCCCCCCCEEEcCCCcCCcc------ccCCCCCccEEEccC
Q 014262 353 QITSLG---SLPELPNLEFLSVAQNKLKSI------AMASQPRLQVLAASK 394 (428)
Q Consensus 353 ~Lt~l~---~l~~L~~L~~L~Ls~N~L~~l------~l~~L~~L~~L~Ls~ 394 (428)
.|..+. .+..|+.|++|.+-+|.++.. -+..+++|+.||+++
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 766653 456667777777777766654 256667777777655
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.49 E-value=1.7e-07 Score=87.09 Aligned_cols=130 Identities=22% Similarity=0.340 Sum_probs=99.1
Q ss_pred CCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-ccc-CCCcccE
Q 014262 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIE-ILTRVKV 322 (428)
Q Consensus 245 fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~-~L~~L~~ 322 (428)
|....+-+.+++++.++..+...-........+||.+|.|..+.. |..++.|.+|.|.+|+|+.|. .+. .+++|+.
T Consensus 15 y~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~ 92 (233)
T KOG1644|consen 15 YINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKT 92 (233)
T ss_pred hhhhccccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccce
Confidence 333344567777777776554422235677889999999988765 888999999999999999985 443 4678999
Q ss_pred EEccCCCCCCC-CCCCCCCCCCCcEEEccCCcCCCCC-----CCCCCCCCCEEEcCCCcC
Q 014262 323 LDLSFNDFKGP-GFEPLENCKALQQLYLAGNQITSLG-----SLPELPNLEFLSVAQNKL 376 (428)
Q Consensus 323 LdLs~N~L~~~-~p~~l~~L~~L~~L~Ls~N~Lt~l~-----~l~~L~~L~~L~Ls~N~L 376 (428)
|.|.+|.|..+ ..+.+..|+.|++|-+-+|.++... .+..+++|+.||+..-..
T Consensus 93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred EEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 99999998753 2345778899999999999998874 467899999999876433
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.49 E-value=8.9e-08 Score=107.62 Aligned_cols=172 Identities=20% Similarity=0.181 Sum_probs=108.8
Q ss_pred CCceeeeCCCC--ceecccccc-cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cccCCCcccEEEc
Q 014262 250 RAGTPQSKDSR--FIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLDL 325 (428)
Q Consensus 250 ~L~~L~L~~n~--L~~LP~~~~-~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~~L~~L~~LdL 325 (428)
++++|-+.+|. +..++..+| .++.|+.|||++|.--+..|..++.|-+|++|+|.+..|..+| ++.+|..|.+|++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 57777777775 666666655 5788888888887766667777888888888888888888887 4888888888888
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEccCCcCCC----CCCCCCCCCCCEEEcCCCcCCcc-ccCCCCCcc----EEEccCCC
Q 014262 326 SFNDFKGPGFEPLENCKALQQLYLAGNQITS----LGSLPELPNLEFLSVAQNKLKSI-AMASQPRLQ----VLAASKNK 396 (428)
Q Consensus 326 s~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~----l~~l~~L~~L~~L~Ls~N~L~~l-~l~~L~~L~----~L~Ls~N~ 396 (428)
.++.....++..+..|.+|++|.|.+-.... +..+.++.+|+.|.+.......+ .+..+..|. .+.+.++.
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~ 705 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS 705 (889)
T ss_pred ccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc
Confidence 8877655556666678888888886654221 13455556666665544433000 122222221 22322222
Q ss_pred CCC-CCCCCCCCCCcEEEccCCCCCC
Q 014262 397 IST-LKGFPHLPLLEVSILCIARICI 421 (428)
Q Consensus 397 Lt~-lp~l~~L~~L~~L~Ls~N~I~~ 421 (428)
... +..+..+.+|+.|.+.++.+..
T Consensus 706 ~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 706 KRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred cceeecccccccCcceEEEEcCCCch
Confidence 222 2356666677777777766643
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=8.5e-08 Score=93.62 Aligned_cols=171 Identities=17% Similarity=0.086 Sum_probs=77.3
Q ss_pred CCCceeeeCCCCceecccc---cccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCC--c-cccCCCcccE
Q 014262 249 RRAGTPQSKDSRFIVLPQV---EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--E-GIEILTRVKV 322 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~~---~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~l--p-~l~~L~~L~~ 322 (428)
.+++.+||.+|.|..+.+. +-+++.|+.|+|+.|.+...+...-..+.+|+.|.|.+..+..- . .+..++.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 3455666666665543332 22556666666666666543322112345666666666554432 1 2445556666
Q ss_pred EEccCCCCCCCC--CCCCCCC-CCCcEEEccCCcCCCCC----CCCCCCCCCEEEcCCCcCCcc----ccCCCCCccEEE
Q 014262 323 LDLSFNDFKGPG--FEPLENC-KALQQLYLAGNQITSLG----SLPELPNLEFLSVAQNKLKSI----AMASQPRLQVLA 391 (428)
Q Consensus 323 LdLs~N~L~~~~--p~~l~~L-~~L~~L~Ls~N~Lt~l~----~l~~L~~L~~L~Ls~N~L~~l----~l~~L~~L~~L~ 391 (428)
|+|+.|.+.... .+..... +.+..|.+..|...... --..++++..+.+..|.|... .+..++.+-.|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 666655332110 0000000 11222222221111100 001234445555555555444 244445555566
Q ss_pred ccCCCCCCC---CCCCCCCCCcEEEccCCCC
Q 014262 392 ASKNKISTL---KGFPHLPLLEVSILCIARI 419 (428)
Q Consensus 392 Ls~N~Lt~l---p~l~~L~~L~~L~Ls~N~I 419 (428)
|..|+|..+ +++..++.|..|.+.+|+|
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 666666553 3455566666666666654
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.2e-08 Score=99.44 Aligned_cols=169 Identities=20% Similarity=0.124 Sum_probs=121.0
Q ss_pred CCceeeeCCCCce--ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC-CCCCc---cccCCCcccEE
Q 014262 250 RAGTPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LSTLE---GIEILTRVKVL 323 (428)
Q Consensus 250 ~L~~L~L~~n~L~--~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~-Ls~lp---~l~~L~~L~~L 323 (428)
+++.+||++..++ .+...+.++..|+.|.|.++++.+-....+..-.+|+.|+|+.+. |+... -+..|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4778888887776 555555678888888888888888777778888889999998764 55432 26778899999
Q ss_pred EccCCCCCCCCCCCC-C-CCCCCcEEEccCCcC----CCCC-CCCCCCCCCEEEcCCCc-CCcc---ccCCCCCccEEEc
Q 014262 324 DLSFNDFKGPGFEPL-E-NCKALQQLYLAGNQI----TSLG-SLPELPNLEFLSVAQNK-LKSI---AMASQPRLQVLAA 392 (428)
Q Consensus 324 dLs~N~L~~~~p~~l-~-~L~~L~~L~Ls~N~L----t~l~-~l~~L~~L~~L~Ls~N~-L~~l---~l~~L~~L~~L~L 392 (428)
+|++|.+.......+ . --.+|..|+|+++.- ..+. -...+++|.+|||++|. |+.- .|..++.|++|.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999987654221111 1 125688888887632 2222 23578999999999874 3332 4788899999999
Q ss_pred cCCCCCCC---CCCCCCCCCcEEEccCCC
Q 014262 393 SKNKISTL---KGFPHLPLLEVSILCIAR 418 (428)
Q Consensus 393 s~N~Lt~l---p~l~~L~~L~~L~Ls~N~ 418 (428)
+.|..-.. -.|...+.|.+||+.++-
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecccc
Confidence 98875443 267888999999998764
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.33 E-value=2.4e-08 Score=87.58 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=84.9
Q ss_pred CCCceeeeCCCCceecccccc---cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cccCCCcccEEE
Q 014262 249 RRAGTPQSKDSRFIVLPQVEI---KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLD 324 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~~~~---~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~~L~~L~~Ld 324 (428)
..+..++|..|.+..|++... ...+|..++|++|.+..+++..-..++.++.|+|.+|.|.++| ++..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 345667888888887777655 4456777889999998887776666778888899999888887 488888888888
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC
Q 014262 325 LSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG 358 (428)
Q Consensus 325 Ls~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~ 358 (428)
+.+|.|.. .|..+..|.+|..|+..+|.+..++
T Consensus 107 l~~N~l~~-~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLNA-EPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCcccc-chHHHHHHHhHHHhcCCCCccccCc
Confidence 88888876 5666667888888888888877774
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=1.1e-07 Score=91.72 Aligned_cols=125 Identities=26% Similarity=0.185 Sum_probs=58.3
Q ss_pred CCCcEEEccCCCCCCCc------cccCCCcccEEEccCCCCCCC-----CCCCCCCCCCCcEEEccCCcCCCCC------
Q 014262 296 PNLEFVYLRDNMLSTLE------GIEILTRVKVLDLSFNDFKGP-----GFEPLENCKALQQLYLAGNQITSLG------ 358 (428)
Q Consensus 296 ~~L~~L~Ls~N~Ls~lp------~l~~L~~L~~LdLs~N~L~~~-----~p~~l~~L~~L~~L~Ls~N~Lt~l~------ 358 (428)
+.|+.+++..|++...+ .+..-.+|+++.+..|.|... ....+..+.+|+.|||+.|.++...
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 44555555555444432 122223455555555544421 1112234455666666666555431
Q ss_pred CCCCCCCCCEEEcCCCcCCccc---------cCCCCCccEEEccCCCCCC-------CCC--CCCCCCCcEEEccCCCCC
Q 014262 359 SLPELPNLEFLSVAQNKLKSIA---------MASQPRLQVLAASKNKIST-------LKG--FPHLPLLEVSILCIARIC 420 (428)
Q Consensus 359 ~l~~L~~L~~L~Ls~N~L~~l~---------l~~L~~L~~L~Ls~N~Lt~-------lp~--l~~L~~L~~L~Ls~N~I~ 420 (428)
.++.++.|+.|++.+|-+..-. -...++|+.|.+.+|.+.. ++. -..++-|..|.+.+|+|.
T Consensus 237 al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 3444455556666555544321 1123555556666655443 121 234555566666666654
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=3.5e-08 Score=86.60 Aligned_cols=106 Identities=22% Similarity=0.180 Sum_probs=59.4
Q ss_pred ccEEEecCCCcCccCc--cccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 014262 274 DVRLDLRGHRVRSLIA--SGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYL 349 (428)
Q Consensus 274 L~~LdLs~N~i~~l~~--~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~L 349 (428)
+-.+||+.|+|-.+.. ..+.....|...+|++|.|..+|. ...++.++.|+|.+|.|.+ +|+.|..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhccc
Confidence 3455666665543322 112333455556666666666653 2334466666666666665 4555666666666666
Q ss_pred cCCcCCCCC-CCCCCCCCCEEEcCCCcCCccc
Q 014262 350 AGNQITSLG-SLPELPNLEFLSVAQNKLKSIA 380 (428)
Q Consensus 350 s~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l~ 380 (428)
..|.|...+ .+..|.+|..|+..+|.+..++
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 666666553 3334556666666666665553
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.22 E-value=4.3e-07 Score=87.79 Aligned_cols=173 Identities=16% Similarity=0.088 Sum_probs=102.2
Q ss_pred CCCCceeeeCCCCce-----ecccccccCCCccEEEecCCCcCc----------cCccccCCCCCCcEEEccCCCCCCC-
Q 014262 248 QRRAGTPQSKDSRFI-----VLPQVEIKAGDDVRLDLRGHRVRS----------LIASGLNLQPNLEFVYLRDNMLSTL- 311 (428)
Q Consensus 248 l~~L~~L~L~~n~L~-----~LP~~~~~l~~L~~LdLs~N~i~~----------l~~~~l~~l~~L~~L~Ls~N~Ls~l- 311 (428)
+..+..++|++|-|. .+...+..-.+|+..+++.-...- +.-..+..|++|+..+|++|.|..-
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 345566777777665 222333334555555555432111 1112345677777777777776542
Q ss_pred c-----cccCCCcccEEEccCCCCCCCCCCCC-------------CCCCCCcEEEccCCcCCCCC------CCCCCCCCC
Q 014262 312 E-----GIEILTRVKVLDLSFNDFKGPGFEPL-------------ENCKALQQLYLAGNQITSLG------SLPELPNLE 367 (428)
Q Consensus 312 p-----~l~~L~~L~~LdLs~N~L~~~~p~~l-------------~~L~~L~~L~Ls~N~Lt~l~------~l~~L~~L~ 367 (428)
+ -+..-+.|.+|.|++|.+..+.-.-+ .+-+.|+.+++..|++...+ .|..-.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 1 25566777777777776643221111 23366777777777776653 233335677
Q ss_pred EEEcCCCcCCcc--------ccCCCCCccEEEccCCCCCCC------CCCCCCCCCcEEEccCCCCC
Q 014262 368 FLSVAQNKLKSI--------AMASQPRLQVLAASKNKISTL------KGFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 368 ~L~Ls~N~L~~l--------~l~~L~~L~~L~Ls~N~Lt~l------p~l~~L~~L~~L~Ls~N~I~ 420 (428)
.+.+.+|.|..- .+..+.+|+.|||++|-|+.. ..++.++.|+.|.+.+|-+.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 777777777543 245667888888888887763 14566666788888777654
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.22 E-value=1.1e-06 Score=98.80 Aligned_cols=99 Identities=21% Similarity=0.114 Sum_probs=45.5
Q ss_pred ceeeeCCCCceecccccccCCCccEEEecCCC--cCccCccccCCCCCCcEEEccCCC-CCCCcc-ccCCCcccEEEccC
Q 014262 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHR--VRSLIASGLNLQPNLEFVYLRDNM-LSTLEG-IEILTRVKVLDLSF 327 (428)
Q Consensus 252 ~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~--i~~l~~~~l~~l~~L~~L~Ls~N~-Ls~lp~-l~~L~~L~~LdLs~ 327 (428)
+.+.+.++.+..++.... +..|+.|-+.+|. +..+....|..++.|+.|||++|. +..+|. ++.|-+|++|+|.+
T Consensus 526 rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 444444444444444332 2244444444443 344444444445555555555442 334442 44455555555555
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCC
Q 014262 328 NDFKGPGFEPLENCKALQQLYLAGN 352 (428)
Q Consensus 328 N~L~~~~p~~l~~L~~L~~L~Ls~N 352 (428)
..|.. +|..|.+|..|.+|++.++
T Consensus 605 t~I~~-LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 605 TGISH-LPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred CCccc-cchHHHHHHhhheeccccc
Confidence 55443 4445555555555555444
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=4.6e-06 Score=85.92 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=86.3
Q ss_pred CCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC-CCCCCccccCCCcccEE
Q 014262 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN-MLSTLEGIEILTRVKVL 323 (428)
Q Consensus 245 fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N-~Ls~lp~l~~L~~L~~L 323 (428)
+..+.++..|++.+|.|..+|. + ...|+.|++.++.--...|..+ ..+|++|+|.+| .|..+| ..|+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceE
Confidence 3345778899999999999983 3 5679999998744333334333 358999999988 666655 357778
Q ss_pred EccCCCCCCCCCCCCCCC-CCCcEEEccCCcCCCCCCCC-CC-CCCCEEEcCCCcCCccccCCCCCccEEEccCCC
Q 014262 324 DLSFNDFKGPGFEPLENC-KALQQLYLAGNQITSLGSLP-EL-PNLEFLSVAQNKLKSIAMASQPRLQVLAASKNK 396 (428)
Q Consensus 324 dLs~N~L~~~~p~~l~~L-~~L~~L~Ls~N~Lt~l~~l~-~L-~~L~~L~Ls~N~L~~l~l~~L~~L~~L~Ls~N~ 396 (428)
+|.+|.+.. +..+ .+|+.|.+.+++......+. .+ .+|++|++.+|....+|-.-...|+.|++..|.
T Consensus 118 ~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 118 EIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ 188 (426)
T ss_pred EeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecccc
Confidence 877665432 2222 24666766443311111111 12 578888888887665553334678888887764
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=7.3e-07 Score=87.21 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=93.0
Q ss_pred cCCCccEEEecCCCcCcc--CccccCCCCCCcEEEccCCCCCCC-ccc-cCCCcccEEEccCCCCCCC-CCCCCCCCCCC
Q 014262 270 KAGDDVRLDLRGHRVRSL--IASGLNLQPNLEFVYLRDNMLSTL-EGI-EILTRVKVLDLSFNDFKGP-GFEPLENCKAL 344 (428)
Q Consensus 270 ~l~~L~~LdLs~N~i~~l--~~~~l~~l~~L~~L~Ls~N~Ls~l-p~l-~~L~~L~~LdLs~N~L~~~-~p~~l~~L~~L 344 (428)
.+.++++|||.+|.|..- ....+.+|+.|++|+|++|.+... ..+ ..+.+|+.|.|.+..+.-. ....+.+++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 356677777777777642 123356677777777777776643 222 3456777777776665421 22234566666
Q ss_pred cEEEccCCcCCCC----CCCCCC-CCCCEEEcCCCcCCccc-----cCCCCCccEEEccCCCCCCCC---CCCCCCCCcE
Q 014262 345 QQLYLAGNQITSL----GSLPEL-PNLEFLSVAQNKLKSIA-----MASQPRLQVLAASKNKISTLK---GFPHLPLLEV 411 (428)
Q Consensus 345 ~~L~Ls~N~Lt~l----~~l~~L-~~L~~L~Ls~N~L~~l~-----l~~L~~L~~L~Ls~N~Lt~lp---~l~~L~~L~~ 411 (428)
+.|+++.|.+..+ ...... +.++.|++..|.+..+. ...++++..+.+..|.|.... .+..++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 7777766654433 111111 24455555555443331 234688888889999888763 5777888889
Q ss_pred EEccCCCCCCcc
Q 014262 412 SILCIARICIAH 423 (428)
Q Consensus 412 L~Ls~N~I~~~~ 423 (428)
|+|..|+|..+.
T Consensus 229 LnL~~~~idswa 240 (418)
T KOG2982|consen 229 LNLGANNIDSWA 240 (418)
T ss_pred hhhcccccccHH
Confidence 999999986653
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.01 E-value=2.4e-06 Score=82.08 Aligned_cols=101 Identities=29% Similarity=0.324 Sum_probs=73.8
Q ss_pred cCCCCCCcEEEccCCCCCCCccccCCCcccEEEccCC--CCCCCCCCCCCCCCCCcEEEccCCcCCCC---CCCCCCCCC
Q 014262 292 LNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN--DFKGPGFEPLENCKALQQLYLAGNQITSL---GSLPELPNL 366 (428)
Q Consensus 292 l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N--~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l---~~l~~L~~L 366 (428)
+..+..|+.|.+.+..++.+..|-.|++|++|+++.| ++.+-+......+++|++|+|++|+|..+ ..+..+.+|
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 4446678888888888888777788888888999888 45544444555668888888888888765 456677778
Q ss_pred CEEEcCCCcCCcc------ccCCCCCccEEEc
Q 014262 367 EFLSVAQNKLKSI------AMASQPRLQVLAA 392 (428)
Q Consensus 367 ~~L~Ls~N~L~~l------~l~~L~~L~~L~L 392 (428)
..|++.+|..+.+ .|.-+++|.+||-
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 8888888877665 2555666666654
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=3.1e-06 Score=93.15 Aligned_cols=103 Identities=19% Similarity=0.232 Sum_probs=53.7
Q ss_pred CCCCcEEEccCCCCCCCc---cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC---CCCCCCCCCCE
Q 014262 295 QPNLEFVYLRDNMLSTLE---GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL---GSLPELPNLEF 368 (428)
Q Consensus 295 l~~L~~L~Ls~N~Ls~lp---~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l---~~l~~L~~L~~ 368 (428)
||.|+.|.+.+-.+..-. -...+++|..||+++.++... ..+.+|++|+.|.+.+=.+... ..+.+|.+|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 456666665555444321 134556666666666655543 3455556666665555444432 24555666666
Q ss_pred EEcCCCcCCcc---------ccCCCCCccEEEccCCCCCC
Q 014262 369 LSVAQNKLKSI---------AMASQPRLQVLAASKNKIST 399 (428)
Q Consensus 369 L~Ls~N~L~~l---------~l~~L~~L~~L~Ls~N~Lt~ 399 (428)
||++....... ....|++|+.||.+++.+..
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 66655433221 12335666666666655543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=5.7e-06 Score=58.62 Aligned_cols=38 Identities=32% Similarity=0.322 Sum_probs=21.2
Q ss_pred CccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCcc
Q 014262 386 RLQVLAASKNKISTLKG-FPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 386 ~L~~L~Ls~N~Lt~lp~-l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
+|++|+|++|+|++++. |.+|++|+.|+|++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 45566666666666554 666666666666666665543
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=3.5e-07 Score=88.64 Aligned_cols=99 Identities=21% Similarity=0.176 Sum_probs=80.9
Q ss_pred CCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc---ccCCCcccEE
Q 014262 247 GQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG---IEILTRVKVL 323 (428)
Q Consensus 247 ~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~---l~~L~~L~~L 323 (428)
.+.+.+.|+|++++|..|.-.. +++.|+.|.|+-|.|..+.+ |..|++|++|+|..|.|..+.+ +.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~-kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICE-KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHH-hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3456788999999999875543 58999999999999999987 8999999999999999999864 7789999999
Q ss_pred EccCCCCCCCCCCC-----CCCCCCCcEEE
Q 014262 324 DLSFNDFKGPGFEP-----LENCKALQQLY 348 (428)
Q Consensus 324 dLs~N~L~~~~p~~-----l~~L~~L~~L~ 348 (428)
.|..|.-.+..+.. +.-|++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999866543332 34577777775
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=3.7e-06 Score=92.56 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=99.5
Q ss_pred CCCcEEEccCCCCCC--Cc-c-ccCCCcccEEEccCCCCCCC-CCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEE
Q 014262 296 PNLEFVYLRDNMLST--LE-G-IEILTRVKVLDLSFNDFKGP-GFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLS 370 (428)
Q Consensus 296 ~~L~~L~Ls~N~Ls~--lp-~-l~~L~~L~~LdLs~N~L~~~-~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~ 370 (428)
.+|++|++.+...-. ++ . -..||.|+.|.+.+-.+... +-..+.++++|..||+++.+|+.+..+..|++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 589999999875332 22 1 34589999999998776542 2334568899999999999999999999999999999
Q ss_pred cCCCcCCcc----ccCCCCCccEEEccCCCCCCC--------CCCCCCCCCcEEEccCCCCCC
Q 014262 371 VAQNKLKSI----AMASQPRLQVLAASKNKISTL--------KGFPHLPLLEVSILCIARICI 421 (428)
Q Consensus 371 Ls~N~L~~l----~l~~L~~L~~L~Ls~N~Lt~l--------p~l~~L~~L~~L~Ls~N~I~~ 421 (428)
+.+=.|... .+.+|.+|++||++......- .....||+|+.||.+++.+..
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 988777764 488899999999999775542 234568999999999988753
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.5e-05 Score=56.51 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=16.0
Q ss_pred ccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCC
Q 014262 274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL 311 (428)
Q Consensus 274 L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~l 311 (428)
|++|+|.+|+|+.+.+ .|.+|++|++|+|++|+|+.+
T Consensus 3 L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 3 LEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp -SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred ceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 4444444444444432 244444444444444444443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.75 E-value=6.9e-05 Score=63.96 Aligned_cols=105 Identities=11% Similarity=0.183 Sum_probs=39.6
Q ss_pred CCCCCCCCCCCceeeeCCCCceecccccc-cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCC
Q 014262 241 RSSNLSGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEIL 317 (428)
Q Consensus 241 ~~~~fs~l~~L~~L~L~~n~L~~LP~~~~-~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L 317 (428)
....|.+..+++.+.+.+ .+..|....+ .+..|+.|++.++ +..+....|.++..|+.+.+.+ .+..++ .|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 345556665666665553 4555554443 2335555555543 5555555555555555555543 333332 24444
Q ss_pred CcccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 014262 318 TRVKVLDLSFNDFKGPGFEPLENCKALQQLYLA 350 (428)
Q Consensus 318 ~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls 350 (428)
.+|+.+++..+ +..+....|.++ +|+.+.+.
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555554433 322223334443 44444443
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=9.6e-07 Score=85.69 Aligned_cols=95 Identities=25% Similarity=0.225 Sum_probs=72.3
Q ss_pred CCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccc----cCCCCCccEEEc
Q 014262 317 LTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA----MASQPRLQVLAA 392 (428)
Q Consensus 317 L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~----l~~L~~L~~L~L 392 (428)
+.+.+.|++.++.|.++ ..+..|+.|+.|.|+-|.|+.+..|..|.+|++|+|..|.|.++. +.++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 55677788888888763 245678888888888888888888888888888888888888873 778888888888
Q ss_pred cCCCCCCC--C-----CCCCCCCCcEEE
Q 014262 393 SKNKISTL--K-----GFPHLPLLEVSI 413 (428)
Q Consensus 393 s~N~Lt~l--p-----~l~~L~~L~~L~ 413 (428)
..|.-.+- + .+.-||+|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 88875542 1 255667777665
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.00028 Score=73.01 Aligned_cols=133 Identities=21% Similarity=0.256 Sum_probs=90.4
Q ss_pred cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC-CCCCCccccCCCcccEEEccCC-CCCCCCCCCCCCCCCCcEE
Q 014262 270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN-MLSTLEGIEILTRVKVLDLSFN-DFKGPGFEPLENCKALQQL 347 (428)
Q Consensus 270 ~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N-~Ls~lp~l~~L~~L~~LdLs~N-~L~~~~p~~l~~L~~L~~L 347 (428)
.+.++..|++++|.|..++ . ...+|+.|++.+| .++.+|+.. ..+|++|+|.+| .+.. +| ..|+.|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP-~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~s-LP------~sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP-V---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISG-LP------ESVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCcccC-C---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccc-cc------cccceE
Confidence 4688999999999988875 1 2347999999874 566666522 468999999998 5543 44 347788
Q ss_pred EccCCcCCCCCCCCCCCCCCEEEcCCCc-CCcc--ccCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCC
Q 014262 348 YLAGNQITSLGSLPELPNLEFLSVAQNK-LKSI--AMASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIAR 418 (428)
Q Consensus 348 ~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~-L~~l--~l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~ 418 (428)
+|.+|.+..+..+. ..|+.|.+.+++ +... +..-...|++|++.+|.+..+| .+. ..|+.|++..|.
T Consensus 118 ~L~~n~~~~L~~LP--ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 118 EIKGSATDSIKNVP--NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred EeCCCCCcccccCc--chHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 88877765543221 257788875433 2112 2112268999999999877655 233 478899988764
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.60 E-value=0.00022 Score=60.75 Aligned_cols=98 Identities=14% Similarity=0.318 Sum_probs=44.5
Q ss_pred cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEE
Q 014262 270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQL 347 (428)
Q Consensus 270 ~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L 347 (428)
.+..|+.+.+.. .+..+....|.++.+|+.|.+.++ +..++ .|..+..|+.+.+.+ .+.......|.++.+|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 445677777663 566666666776667777777664 55553 255665666666654 3333333455556666666
Q ss_pred EccCCcCCCC--CCCCCCCCCCEEEcC
Q 014262 348 YLAGNQITSL--GSLPELPNLEFLSVA 372 (428)
Q Consensus 348 ~Ls~N~Lt~l--~~l~~L~~L~~L~Ls 372 (428)
++..+ +..+ ..|.++ .|+.+.+.
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 66543 4433 234444 55555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.47 E-value=6.9e-05 Score=72.21 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=72.6
Q ss_pred ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC---C-CCCCCCCCCEEEcCCCcCCcc----ccCCCC
Q 014262 314 IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL---G-SLPELPNLEFLSVAQNKLKSI----AMASQP 385 (428)
Q Consensus 314 l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l---~-~l~~L~~L~~L~Ls~N~L~~l----~l~~L~ 385 (428)
...+..|+.|.+.+..++. ...|-.|++|+.|.++.|.+... . -...+++|++|+|++|+|+.+ ++..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 3455677777777776664 23667788999999999955433 2 334569999999999998876 578888
Q ss_pred CccEEEccCCCCCCCC-----CCCCCCCCcEEEc
Q 014262 386 RLQVLAASKNKISTLK-----GFPHLPLLEVSIL 414 (428)
Q Consensus 386 ~L~~L~Ls~N~Lt~lp-----~l~~L~~L~~L~L 414 (428)
+|..|++.+|..+.+. .|.-+++|.+||-
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 8999999999888764 3666777777653
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=8.8e-06 Score=79.79 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=29.9
Q ss_pred cCCCCCccEEEccCCC-CCC--CCCCCCCCCCcEEEccCCCC
Q 014262 381 MASQPRLQVLAASKNK-IST--LKGFPHLPLLEVSILCIARI 419 (428)
Q Consensus 381 l~~L~~L~~L~Ls~N~-Lt~--lp~l~~L~~L~~L~Ls~N~I 419 (428)
...+++|.+|||++|. |+. +..|..++.|++|.|+.|..
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 3467899999999875 444 33678888999999988864
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.57 E-value=2e-05 Score=83.40 Aligned_cols=172 Identities=24% Similarity=0.141 Sum_probs=117.9
Q ss_pred CceeeeCCCCcee-----cccccccCCCccEEEecCCCcCccCccc----cCCC-CCCcEEEccCCCCCCCc------cc
Q 014262 251 AGTPQSKDSRFIV-----LPQVEIKAGDDVRLDLRGHRVRSLIASG----LNLQ-PNLEFVYLRDNMLSTLE------GI 314 (428)
Q Consensus 251 L~~L~L~~n~L~~-----LP~~~~~l~~L~~LdLs~N~i~~l~~~~----l~~l-~~L~~L~Ls~N~Ls~lp------~l 314 (428)
+..+.+.+|.+.. +-..+.....|..|+|.+|.+.+..... +... ..|++|++..|.++... .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566777777663 2333445678888999999888533322 2332 56777888888887752 35
Q ss_pred cCCCcccEEEccCCCCCC----CCCCCC----CCCCCCcEEEccCCcCCCCC------CCCCCCC-CCEEEcCCCcCCcc
Q 014262 315 EILTRVKVLDLSFNDFKG----PGFEPL----ENCKALQQLYLAGNQITSLG------SLPELPN-LEFLSVAQNKLKSI 379 (428)
Q Consensus 315 ~~L~~L~~LdLs~N~L~~----~~p~~l----~~L~~L~~L~Ls~N~Lt~l~------~l~~L~~-L~~L~Ls~N~L~~l 379 (428)
.....|++||+..|.+.. .++..+ ....++++|.|.+|.++... .+..... +..|++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 567888889999988742 122233 34778899999999887542 3455555 66789999988865
Q ss_pred c-------cCCC-CCccEEEccCCCCCCCC------CCCCCCCCcEEEccCCCCCCc
Q 014262 380 A-------MASQ-PRLQVLAASKNKISTLK------GFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 380 ~-------l~~L-~~L~~L~Ls~N~Lt~lp------~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
. +..+ ..++++++.+|.|+.-. .+..+..++.|.|..|.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 1 4444 67789999999988732 456677889999999988654
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.69 E-value=0.00016 Score=76.58 Aligned_cols=149 Identities=26% Similarity=0.277 Sum_probs=112.7
Q ss_pred ccEEEecCCCcCccCc----cccCCCCCCcEEEccCCCCCCC------ccccCC-CcccEEEccCCCCCCC----CCCCC
Q 014262 274 DVRLDLRGHRVRSLIA----SGLNLQPNLEFVYLRDNMLSTL------EGIEIL-TRVKVLDLSFNDFKGP----GFEPL 338 (428)
Q Consensus 274 L~~LdLs~N~i~~l~~----~~l~~l~~L~~L~Ls~N~Ls~l------p~l~~L-~~L~~LdLs~N~L~~~----~p~~l 338 (428)
+..|+|.+|.+..... ..+..++.|+.|+|.+|.|... ..+... ..|++|++..|.+... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7889999999886433 3456788999999999999853 123333 6778899999988763 34455
Q ss_pred CCCCCCcEEEccCCcCCCCC------CC----CCCCCCCEEEcCCCcCCcc-------ccCCCCC-ccEEEccCCCCCCC
Q 014262 339 ENCKALQQLYLAGNQITSLG------SL----PELPNLEFLSVAQNKLKSI-------AMASQPR-LQVLAASKNKISTL 400 (428)
Q Consensus 339 ~~L~~L~~L~Ls~N~Lt~l~------~l----~~L~~L~~L~Ls~N~L~~l-------~l~~L~~-L~~L~Ls~N~Lt~l 400 (428)
.....|+.|++..|.+.... .+ ....++++|+|.+|.++.. .+..... +..|++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 66788999999999986541 23 3577899999999998864 2555666 77799999999873
Q ss_pred ------CCCCCC-CCCcEEEccCCCCCCc
Q 014262 401 ------KGFPHL-PLLEVSILCIARICIA 422 (428)
Q Consensus 401 ------p~l~~L-~~L~~L~Ls~N~I~~~ 422 (428)
+.+..+ ..++++++..|.|...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEK 277 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence 356666 7889999999998654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.92 E-value=0.0066 Score=62.88 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=27.7
Q ss_pred CCCCCcEEEccCCC-CCCC--cccc-CCCcccEEEccCCC-CCCCCCC-CCCCCCCCcEEEccCCc
Q 014262 294 LQPNLEFVYLRDNM-LSTL--EGIE-ILTRVKVLDLSFND-FKGPGFE-PLENCKALQQLYLAGNQ 353 (428)
Q Consensus 294 ~l~~L~~L~Ls~N~-Ls~l--p~l~-~L~~L~~LdLs~N~-L~~~~p~-~l~~L~~L~~L~Ls~N~ 353 (428)
.+.+|+.|+|.++. +++. ..+. .+++|++|.+.++. +++.... ....++.|++|+|.++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34556666666655 4432 1111 25566666655544 3321111 12234556666665544
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.67 E-value=0.0015 Score=62.53 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=39.4
Q ss_pred CCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 014262 271 AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYL 349 (428)
Q Consensus 271 l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~L 349 (428)
+...+.||+..|++-.+.-. |..+..|..|+++.|+|..+| ++.++..+..+++.+|.+.. .|..+..+++++++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhh
Confidence 34455555555554443222 344444555555555555544 24444555555555554443 4445555555555555
Q ss_pred cCCc
Q 014262 350 AGNQ 353 (428)
Q Consensus 350 s~N~ 353 (428)
-+|.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 4444
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.93 E-value=0.0023 Score=61.26 Aligned_cols=85 Identities=22% Similarity=0.153 Sum_probs=57.9
Q ss_pred cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCccc--cCCCCCccE
Q 014262 313 GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSIA--MASQPRLQV 389 (428)
Q Consensus 313 ~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~~ 389 (428)
++..+...+.||++.|++.. +-..|..++.|..|+++.|.|.-++ ++..+..+..+++.+|.+...| ++.++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 46667777888888887665 3345666677777777777777764 5666666677777777766664 566666666
Q ss_pred EEccCCCCC
Q 014262 390 LAASKNKIS 398 (428)
Q Consensus 390 L~Ls~N~Lt 398 (428)
+++-+|.|.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 666666644
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=0.019 Score=53.91 Aligned_cols=45 Identities=11% Similarity=-0.028 Sum_probs=25.3
Q ss_pred ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC
Q 014262 263 VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM 307 (428)
Q Consensus 263 ~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~ 307 (428)
.+|......-.++.+|.++..|..+.-+.|.+++.|+.|.+.+|.
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 344333333455666666666666555556666666666666553
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.12 E-value=0.05 Score=32.44 Aligned_cols=12 Identities=42% Similarity=0.548 Sum_probs=5.4
Q ss_pred ccEEEccCCCCC
Q 014262 320 VKVLDLSFNDFK 331 (428)
Q Consensus 320 L~~LdLs~N~L~ 331 (428)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.45 E-value=0.12 Score=28.93 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=5.7
Q ss_pred CCcEEEccCCCCCCC
Q 014262 297 NLEFVYLRDNMLSTL 311 (428)
Q Consensus 297 ~L~~L~Ls~N~Ls~l 311 (428)
+|+.|+|++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 445555555554443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.28 E-value=0.11 Score=30.89 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=7.3
Q ss_pred ccEEEecCCCcCcc
Q 014262 274 DVRLDLRGHRVRSL 287 (428)
Q Consensus 274 L~~LdLs~N~i~~l 287 (428)
|++|||++|+|+.+
T Consensus 2 L~~Ldls~n~l~~i 15 (22)
T PF00560_consen 2 LEYLDLSGNNLTSI 15 (22)
T ss_dssp ESEEEETSSEESEE
T ss_pred ccEEECCCCcCEeC
Confidence 45555555555543
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.53 E-value=0.069 Score=55.05 Aligned_cols=125 Identities=23% Similarity=0.215 Sum_probs=73.5
Q ss_pred CCCCCcEEEccCCCC-CCCc--c-ccCCCcccEEEccCCC-CCCCCCCCC-CCCCCCcEEEccCCcCCCCC----CCCCC
Q 014262 294 LQPNLEFVYLRDNML-STLE--G-IEILTRVKVLDLSFND-FKGPGFEPL-ENCKALQQLYLAGNQITSLG----SLPEL 363 (428)
Q Consensus 294 ~l~~L~~L~Ls~N~L-s~lp--~-l~~L~~L~~LdLs~N~-L~~~~p~~l-~~L~~L~~L~Ls~N~Lt~l~----~l~~L 363 (428)
++..|+.|+.+++.. .... . ..+..+|++|.|..++ |.+.....+ .+++.|+.|++..+.+.... .-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 345667777766543 2211 1 3456777777777765 333222222 25567777777776544322 23467
Q ss_pred CCCCEEEcCCCcC-Cccc-------cCCCCCccEEEccCCCCCC---CCCCCCCCCCcEEEccCCC
Q 014262 364 PNLEFLSVAQNKL-KSIA-------MASQPRLQVLAASKNKIST---LKGFPHLPLLEVSILCIAR 418 (428)
Q Consensus 364 ~~L~~L~Ls~N~L-~~l~-------l~~L~~L~~L~Ls~N~Lt~---lp~l~~L~~L~~L~Ls~N~ 418 (428)
+.|+.|.|+++.+ ++.. -..+..|+.|.|+++.+.. +..+..+++|+.++|.+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7788888887743 3221 2345677778888776543 3456667778877776655
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.45 E-value=0.15 Score=28.49 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=2.9
Q ss_pred CEEEcCCCc
Q 014262 367 EFLSVAQNK 375 (428)
Q Consensus 367 ~~L~Ls~N~ 375 (428)
+.|+|++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.70 E-value=0.078 Score=54.89 Aligned_cols=106 Identities=25% Similarity=0.238 Sum_probs=62.2
Q ss_pred CCCccEEEecCCCcCcc--CccccCCCCCCcEEEccCC-C-CCCCc-----cccCCCcccEEEccCCC-CCCCCCCCCCC
Q 014262 271 AGDDVRLDLRGHRVRSL--IASGLNLQPNLEFVYLRDN-M-LSTLE-----GIEILTRVKVLDLSFND-FKGPGFEPLEN 340 (428)
Q Consensus 271 l~~L~~LdLs~N~i~~l--~~~~l~~l~~L~~L~Ls~N-~-Ls~lp-----~l~~L~~L~~LdLs~N~-L~~~~p~~l~~ 340 (428)
+..|+.|.+.++.-... .......+++|+.|++.++ . +...+ -...+.+|+.|+|.++. +.+.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46666776665532221 1233556778888888763 1 11111 13446778888888777 55443333332
Q ss_pred -CCCCcEEEccCCc-CCCCC---CCCCCCCCCEEEcCCCcC
Q 014262 341 -CKALQQLYLAGNQ-ITSLG---SLPELPNLEFLSVAQNKL 376 (428)
Q Consensus 341 -L~~L~~L~Ls~N~-Lt~l~---~l~~L~~L~~L~Ls~N~L 376 (428)
+++|+.|.+.++. +++.. ....++.|++|+|+++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 6778888877666 55432 345567788888887643
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=89.24 E-value=0.12 Score=55.03 Aligned_cols=60 Identities=27% Similarity=0.361 Sum_probs=36.4
Q ss_pred CCCCCcEEEccCCcCCCCCCC----CCCCCCCEEEcCCC--cCCcc-ccC--CCCCccEEEccCCCCCC
Q 014262 340 NCKALQQLYLAGNQITSLGSL----PELPNLEFLSVAQN--KLKSI-AMA--SQPRLQVLAASKNKIST 399 (428)
Q Consensus 340 ~L~~L~~L~Ls~N~Lt~l~~l----~~L~~L~~L~Ls~N--~L~~l-~l~--~L~~L~~L~Ls~N~Lt~ 399 (428)
+.+.+..|+|++|+|..+..+ ...++|..|+|++| .+... .++ ....|++|.|.+|.|..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 346677777777777776433 23467777777777 33332 222 22346777777777664
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=0.073 Score=50.02 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=40.9
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC---CCCC-CCCCCCEEEcCCC-cCCcc---ccCCCCCccEE
Q 014262 319 RVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL---GSLP-ELPNLEFLSVAQN-KLKSI---AMASQPRLQVL 390 (428)
Q Consensus 319 ~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l---~~l~-~L~~L~~L~Ls~N-~L~~l---~l~~L~~L~~L 390 (428)
.++.+|.++..|..+..+.|.++..|+.|.+.+|.--+- ..+. -.++|+.|+|++| +|++- .+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455666666666655555566666666666655532211 1111 3456667777665 45554 24555666666
Q ss_pred EccC
Q 014262 391 AASK 394 (428)
Q Consensus 391 ~Ls~ 394 (428)
+|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.10 E-value=0.92 Score=27.74 Aligned_cols=12 Identities=42% Similarity=0.589 Sum_probs=4.6
Q ss_pred ccEEEccCCCCC
Q 014262 320 VKVLDLSFNDFK 331 (428)
Q Consensus 320 L~~LdLs~N~L~ 331 (428)
|++|+|.+|+|.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00370 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 333333333333
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.10 E-value=0.92 Score=27.74 Aligned_cols=12 Identities=42% Similarity=0.589 Sum_probs=4.6
Q ss_pred ccEEEccCCCCC
Q 014262 320 VKVLDLSFNDFK 331 (428)
Q Consensus 320 L~~LdLs~N~L~ 331 (428)
|++|+|.+|+|.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00369 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 333333333333
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.35 E-value=1 Score=27.52 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=7.0
Q ss_pred CCcEEEccCCCCCCC
Q 014262 297 NLEFVYLRDNMLSTL 311 (428)
Q Consensus 297 ~L~~L~Ls~N~Ls~l 311 (428)
+|++|+|.+|+|..+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444444444444444
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.35 E-value=1 Score=27.52 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=7.0
Q ss_pred CCcEEEccCCCCCCC
Q 014262 297 NLEFVYLRDNMLSTL 311 (428)
Q Consensus 297 ~L~~L~Ls~N~Ls~l 311 (428)
+|++|+|.+|+|..+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444444444444444
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.51 E-value=1.4 Score=27.61 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=10.6
Q ss_pred CCccEEEccCCCCCCCCC
Q 014262 385 PRLQVLAASKNKISTLKG 402 (428)
Q Consensus 385 ~~L~~L~Ls~N~Lt~lp~ 402 (428)
.+|+.|+|++|+|+.+..
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 456666666666655543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.56 E-value=1.5 Score=27.42 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=8.8
Q ss_pred CCCcEEEccCCCCCCCc
Q 014262 296 PNLEFVYLRDNMLSTLE 312 (428)
Q Consensus 296 ~~L~~L~Ls~N~Ls~lp 312 (428)
.+|+.|+|.+|.|+.++
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34555555555555443
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.40 E-value=1.2 Score=46.30 Aligned_cols=127 Identities=16% Similarity=0.017 Sum_probs=83.7
Q ss_pred cCCCccEEEecCCCcC-ccCccc-cCCCCCCcEEEccCCC-CCCCc--c-ccCCCcccEEEccCCCCCC--CCCCCCCCC
Q 014262 270 KAGDDVRLDLRGHRVR-SLIASG-LNLQPNLEFVYLRDNM-LSTLE--G-IEILTRVKVLDLSFNDFKG--PGFEPLENC 341 (428)
Q Consensus 270 ~l~~L~~LdLs~N~i~-~l~~~~-l~~l~~L~~L~Ls~N~-Ls~lp--~-l~~L~~L~~LdLs~N~L~~--~~p~~l~~L 341 (428)
.+..|+.|+.+++... ...-.. -.+..+|++|-|..|+ |+..- . -.+++.|+.|++..+.... .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 4677889988876542 222122 2457899999999986 44431 1 3467889999988876432 123333578
Q ss_pred CCCcEEEccCCcCCCCC-------CCCCCCCCCEEEcCCCcCCcc----ccCCCCCccEEEccCCC
Q 014262 342 KALQQLYLAGNQITSLG-------SLPELPNLEFLSVAQNKLKSI----AMASQPRLQVLAASKNK 396 (428)
Q Consensus 342 ~~L~~L~Ls~N~Lt~l~-------~l~~L~~L~~L~Ls~N~L~~l----~l~~L~~L~~L~Ls~N~ 396 (428)
+.|+.|.|+++.+..-. .-..+..|+.|.|.++.+..- .+..+++|+.++|-++.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 88999999987543221 234567788999988865443 35667788888887765
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.66 E-value=2.2 Score=26.77 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=13.7
Q ss_pred CCccEEEccCCCCCCCCCCC
Q 014262 385 PRLQVLAASKNKISTLKGFP 404 (428)
Q Consensus 385 ~~L~~L~Ls~N~Lt~lp~l~ 404 (428)
.+|+.|++++|+|+.+|++.
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL~ 21 (26)
T smart00364 2 PSLKELNVSNNQLTSLPELX 21 (26)
T ss_pred cccceeecCCCccccCcccc
Confidence 35677777777777777543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.68 E-value=1.9 Score=46.15 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=17.6
Q ss_pred CCCCcEEEccCCCCCCCccc----cCCCcccEEEccCC
Q 014262 295 QPNLEFVYLRDNMLSTLEGI----EILTRVKVLDLSFN 328 (428)
Q Consensus 295 l~~L~~L~Ls~N~Ls~lp~l----~~L~~L~~LdLs~N 328 (428)
.+.+..|.|++|+|..+..+ ...++|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34555555555555555432 23455555555555
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.76 E-value=3.5 Score=24.62 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=5.2
Q ss_pred CCCEEEcCCCcCC
Q 014262 365 NLEFLSVAQNKLK 377 (428)
Q Consensus 365 ~L~~L~Ls~N~L~ 377 (428)
+|+.|+|++|.|.
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4445555555443
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.38 E-value=7.8 Score=24.30 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=6.8
Q ss_pred CccEEEccCCCCC
Q 014262 386 RLQVLAASKNKIS 398 (428)
Q Consensus 386 ~L~~L~Ls~N~Lt 398 (428)
.|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=38.57 E-value=1.1e+02 Score=32.77 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=7.0
Q ss_pred CCCCcEEEccCCC
Q 014262 295 QPNLEFVYLRDNM 307 (428)
Q Consensus 295 l~~L~~L~Ls~N~ 307 (428)
.++|++.++..|.
T Consensus 267 ~tkl~~~kls~ng 279 (553)
T KOG4242|consen 267 TTKLTFGKLSRNG 279 (553)
T ss_pred ccccchhhhccCC
Confidence 3455555555554
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.36 E-value=25 Score=44.67 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=20.9
Q ss_pred eeCCCCceecccccc-cCCCccEEEecCCCcC
Q 014262 255 QSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVR 285 (428)
Q Consensus 255 ~L~~n~L~~LP~~~~-~l~~L~~LdLs~N~i~ 285 (428)
||++|+|..|+...| .+..|++|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 466777777777655 4567777777777554
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.50 E-value=39 Score=43.15 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=26.5
Q ss_pred EccCCCCCCCcc--ccCCCcccEEEccCCCCCC
Q 014262 302 YLRDNMLSTLEG--IEILTRVKVLDLSFNDFKG 332 (428)
Q Consensus 302 ~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N~L~~ 332 (428)
||++|+|..|+. |..+.+|++|+|.+|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999999974 8889999999999998763
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.18 E-value=60 Score=34.64 Aligned_cols=80 Identities=15% Similarity=-0.037 Sum_probs=42.1
Q ss_pred CCcEEEccCCCCCC-Ccc----ccCCCcccEEEccCCCCCC---CCCCCCCCCCCCcEEEccCCcCCCC-----C-----
Q 014262 297 NLEFVYLRDNMLST-LEG----IEILTRVKVLDLSFNDFKG---PGFEPLENCKALQQLYLAGNQITSL-----G----- 358 (428)
Q Consensus 297 ~L~~L~Ls~N~Ls~-lp~----l~~L~~L~~LdLs~N~L~~---~~p~~l~~L~~L~~L~Ls~N~Lt~l-----~----- 358 (428)
.|.+|+|+.|.... ++. ...-..|+.|+.+...+.- ..+..++.-++|++.+|..|....- +
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 56677777776554 232 1223345666666555431 1122333446677777777765421 1
Q ss_pred CCCCCCCCCEEEcCCCcCC
Q 014262 359 SLPELPNLEFLSVAQNKLK 377 (428)
Q Consensus 359 ~l~~L~~L~~L~Ls~N~L~ 377 (428)
.|..-.++ +|++..+...
T Consensus 295 ~fS~~~sg-hln~~~~~~p 312 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTP 312 (553)
T ss_pred ccCcCccc-ccccccccCc
Confidence 23444566 7777766544
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.25 E-value=60 Score=19.62 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=5.4
Q ss_pred CCCcEEEccCC
Q 014262 296 PNLEFVYLRDN 306 (428)
Q Consensus 296 ~~L~~L~Ls~N 306 (428)
++|++|+|.+|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555544
Done!