Query 014262
Match_columns 428
No_of_seqs 501 out of 2464
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ozn_A Reticulon 4 receptor; N 99.9 7.1E-24 2.4E-28 204.7 20.2 197 228-424 35-243 (285)
2 3zyj_A Leucine-rich repeat-con 99.9 2E-23 6.7E-28 214.3 20.3 197 228-424 67-297 (440)
3 2o6q_A Variable lymphocyte rec 99.9 7.4E-23 2.5E-27 196.6 23.1 191 230-423 21-222 (270)
4 3zyi_A Leucine-rich repeat-con 99.9 4.4E-23 1.5E-27 212.4 21.8 197 228-424 78-308 (452)
5 1h6u_A Internalin H; cell adhe 99.9 1.4E-23 4.9E-28 206.1 16.2 188 230-424 46-234 (308)
6 3m19_A Variable lymphocyte rec 99.9 8.9E-23 3E-27 194.0 20.6 169 250-420 15-192 (251)
7 1p9a_G Platelet glycoprotein I 99.9 7.6E-23 2.6E-27 199.6 19.5 190 230-424 15-213 (290)
8 2o6q_A Variable lymphocyte rec 99.9 1.8E-22 6.1E-27 193.9 21.5 174 249-424 16-198 (270)
9 2z62_A TOLL-like receptor 4, v 99.9 5.2E-23 1.8E-27 197.7 17.3 196 228-423 31-241 (276)
10 1p9a_G Platelet glycoprotein I 99.9 2.3E-22 8E-27 196.1 22.0 179 244-425 5-190 (290)
11 3zyj_A Leucine-rich repeat-con 99.9 9.5E-23 3.2E-27 209.2 18.3 170 230-399 117-293 (440)
12 3zyi_A Leucine-rich repeat-con 99.9 1.2E-22 4.2E-27 209.0 18.7 169 231-399 129-304 (452)
13 1ozn_A Reticulon 4 receptor; N 99.9 7.4E-22 2.5E-26 190.5 20.8 176 248-423 31-217 (285)
14 2z66_A Variable lymphocyte rec 99.9 2E-22 6.7E-27 196.2 16.5 191 229-419 32-260 (306)
15 3rfs_A Internalin B, repeat mo 99.9 9.9E-22 3.4E-26 189.2 20.9 176 245-423 37-222 (272)
16 1h6t_A Internalin B; cell adhe 99.9 1.8E-22 6.1E-27 196.9 15.2 176 245-425 42-218 (291)
17 1wwl_A Monocyte differentiatio 99.9 7.8E-23 2.7E-27 200.7 11.8 194 229-422 99-311 (312)
18 2z66_A Variable lymphocyte rec 99.9 1.3E-22 4.6E-27 197.4 12.5 169 230-399 83-262 (306)
19 1h6u_A Internalin H; cell adhe 99.9 5.9E-22 2E-26 194.6 16.9 174 245-423 37-211 (308)
20 2xwt_C Thyrotropin receptor; s 99.9 5.5E-22 1.9E-26 186.8 15.3 189 228-417 34-236 (239)
21 1xku_A Decorin; proteoglycan, 99.9 1.9E-21 6.5E-26 191.5 19.3 189 230-423 81-279 (330)
22 2id5_A Lingo-1, leucine rich r 99.9 2.2E-21 7.4E-26 200.3 19.7 123 230-352 37-162 (477)
23 2z80_A TOLL-like receptor 2, v 99.9 2.7E-22 9.3E-27 199.6 12.2 196 228-423 55-318 (353)
24 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-21 7.4E-26 191.4 18.2 190 230-422 59-279 (332)
25 3o6n_A APL1; leucine-rich repe 99.9 2.4E-21 8.3E-26 195.0 18.7 61 360-420 244-308 (390)
26 4fcg_A Uncharacterized protein 99.9 7.9E-22 2.7E-26 195.5 14.7 188 229-419 85-289 (328)
27 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-22 5E-27 199.2 8.7 185 235-420 87-281 (313)
28 3rfs_A Internalin B, repeat mo 99.9 1.5E-21 5.2E-26 187.9 15.3 183 230-420 46-235 (272)
29 3o6n_A APL1; leucine-rich repe 99.9 1.4E-21 4.9E-26 196.7 15.6 193 230-423 50-288 (390)
30 2z80_A TOLL-like receptor 2, v 99.9 4.2E-22 1.4E-26 198.2 11.4 172 228-399 79-315 (353)
31 2xot_A Amphoterin-induced prot 99.9 5.3E-22 1.8E-26 199.0 11.3 171 252-424 21-207 (361)
32 1xku_A Decorin; proteoglycan, 99.9 6.1E-21 2.1E-25 187.8 18.6 193 228-424 55-257 (330)
33 1m9s_A Internalin B; cell inva 99.9 1.4E-21 4.9E-26 209.7 15.2 176 245-425 39-215 (605)
34 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-20 6E-25 194.4 22.7 181 230-423 69-249 (457)
35 3o53_A Protein LRIM1, AGAP0063 99.9 8.5E-22 2.9E-26 193.7 12.2 190 230-420 39-250 (317)
36 4fcg_A Uncharacterized protein 99.9 2.1E-21 7E-26 192.5 14.5 194 229-424 108-318 (328)
37 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-22 5.5E-27 198.9 6.2 194 230-424 106-309 (313)
38 4glp_A Monocyte differentiatio 99.9 1.1E-21 3.7E-26 192.2 11.9 192 229-421 95-308 (310)
39 3v47_A TOLL-like receptor 5B a 99.9 7.3E-21 2.5E-25 194.5 18.3 108 316-423 297-412 (455)
40 3oja_B Anopheles plasmodium-re 99.9 4.7E-21 1.6E-25 204.4 17.3 189 230-419 104-357 (597)
41 3oja_B Anopheles plasmodium-re 99.9 8.1E-21 2.8E-25 202.6 18.2 193 230-422 80-316 (597)
42 2z62_A TOLL-like receptor 4, v 99.9 5.8E-21 2E-25 183.3 15.4 177 249-425 28-218 (276)
43 3oja_A Leucine-rich immune mol 99.9 2.3E-21 7.9E-26 202.5 13.2 190 230-420 39-250 (487)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-20 4E-25 186.1 17.3 190 229-420 82-307 (332)
45 4fmz_A Internalin; leucine ric 99.8 1.4E-20 4.6E-25 186.0 17.7 186 231-423 72-259 (347)
46 3v47_A TOLL-like receptor 5B a 99.8 1.4E-20 4.6E-25 192.5 18.3 126 230-355 35-167 (455)
47 1xeu_A Internalin C; cellular 99.8 2.1E-21 7.2E-26 186.8 11.5 170 248-423 18-188 (263)
48 2xwt_C Thyrotropin receptor; s 99.8 4.7E-21 1.6E-25 180.4 13.7 175 249-425 31-223 (239)
49 4fmz_A Internalin; leucine ric 99.8 1.1E-20 3.8E-25 186.6 16.8 104 316-421 219-325 (347)
50 3t6q_A CD180 antigen; protein- 99.8 2.6E-20 9.1E-25 197.3 20.7 195 228-422 36-316 (606)
51 2id5_A Lingo-1, leucine rich r 99.8 7.3E-21 2.5E-25 196.3 15.7 195 230-424 109-338 (477)
52 3bz5_A Internalin-J, INLJ; leu 99.8 5.3E-20 1.8E-24 190.8 21.7 182 229-423 46-228 (457)
53 3vq2_A TLR4, TOLL-like recepto 99.8 2.7E-21 9.2E-26 205.0 12.2 181 244-424 371-563 (606)
54 1ziw_A TOLL-like receptor 3; i 99.8 3.9E-20 1.3E-24 198.9 21.4 193 230-422 386-599 (680)
55 2o6s_A Variable lymphocyte rec 99.8 1.2E-20 4.1E-25 173.9 14.1 162 252-420 10-178 (208)
56 1o6v_A Internalin A; bacterial 99.8 2.5E-20 8.7E-25 192.5 17.1 169 246-419 196-365 (466)
57 1o6v_A Internalin A; bacterial 99.8 1.5E-20 5.2E-25 194.1 15.4 186 230-422 73-280 (466)
58 3t6q_A CD180 antigen; protein- 99.8 3.3E-20 1.1E-24 196.6 18.2 192 229-420 258-462 (606)
59 3m19_A Variable lymphocyte rec 99.8 1.2E-19 4.1E-24 172.3 19.6 168 230-400 19-194 (251)
60 4ezg_A Putative uncharacterize 99.8 8E-21 2.7E-25 174.2 10.5 150 270-421 42-195 (197)
61 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-20 5.6E-25 198.0 13.1 169 252-422 34-216 (635)
62 3rgz_A Protein brassinosteroid 99.8 2.4E-20 8.3E-25 204.6 14.7 125 231-355 424-551 (768)
63 1wwl_A Monocyte differentiatio 99.8 2.7E-21 9.1E-26 189.8 6.2 174 247-423 93-290 (312)
64 1ziw_A TOLL-like receptor 3; i 99.8 6.1E-20 2.1E-24 197.4 17.3 195 230-424 410-627 (680)
65 3vq2_A TLR4, TOLL-like recepto 99.8 1.2E-19 4.1E-24 192.3 18.6 130 228-357 35-168 (606)
66 3rgz_A Protein brassinosteroid 99.8 1.7E-20 5.8E-25 205.9 12.2 192 229-420 446-717 (768)
67 3e6j_A Variable lymphocyte rec 99.8 1.5E-19 5.3E-24 169.9 16.5 148 250-399 20-173 (229)
68 2z63_A TOLL-like receptor 4, v 99.8 1.2E-19 4E-24 190.3 15.7 178 246-424 344-536 (570)
69 4eco_A Uncharacterized protein 99.8 1.3E-19 4.3E-24 195.1 16.3 179 245-423 372-582 (636)
70 2z7x_B TOLL-like receptor 1, v 99.8 6.7E-20 2.3E-24 190.9 13.6 171 251-424 304-486 (520)
71 2v9t_B SLIT homolog 2 protein 99.8 2.2E-19 7.6E-24 168.0 15.8 146 252-399 14-166 (220)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.9E-19 2.7E-23 185.3 21.8 79 229-309 80-159 (562)
73 2v9t_B SLIT homolog 2 protein 99.8 2.9E-19 1E-23 167.2 16.1 148 275-425 14-171 (220)
74 2z63_A TOLL-like receptor 4, v 99.8 2.8E-19 9.5E-24 187.4 17.7 152 227-378 30-191 (570)
75 1h6t_A Internalin B; cell adhe 99.8 1.6E-19 5.6E-24 175.9 14.8 165 230-401 51-216 (291)
76 4eco_A Uncharacterized protein 99.8 7.7E-20 2.6E-24 196.8 13.7 177 244-422 325-528 (636)
77 2z81_A CD282 antigen, TOLL-lik 99.8 2.4E-19 8.2E-24 187.5 16.7 174 249-423 310-514 (549)
78 3o53_A Protein LRIM1, AGAP0063 99.8 8.8E-21 3E-25 186.5 5.3 178 244-423 29-230 (317)
79 1xeu_A Internalin C; cellular 99.8 8.3E-20 2.8E-24 175.6 10.9 163 231-401 25-188 (263)
80 2v70_A SLIT-2, SLIT homolog 2 99.8 3.8E-19 1.3E-23 166.4 14.4 146 252-399 14-167 (220)
81 4ezg_A Putative uncharacterize 99.8 1.5E-19 5.1E-24 165.7 11.1 151 246-399 41-195 (197)
82 3cvr_A Invasion plasmid antige 99.8 1.3E-18 4.3E-23 185.6 19.3 173 230-421 64-244 (571)
83 4ecn_A Leucine-rich repeat pro 99.8 1.7E-19 5.8E-24 200.9 13.0 177 243-420 442-657 (876)
84 3oja_A Leucine-rich immune mol 99.8 4.8E-20 1.7E-24 192.5 8.1 175 247-423 32-230 (487)
85 3e6j_A Variable lymphocyte rec 99.8 2E-18 6.7E-23 162.4 18.2 147 274-423 21-176 (229)
86 1m9s_A Internalin B; cell inva 99.8 4.4E-19 1.5E-23 190.4 15.5 165 230-401 48-213 (605)
87 2z81_A CD282 antigen, TOLL-lik 99.8 3E-19 1E-23 186.8 13.6 193 228-420 29-236 (549)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1E-18 3.6E-23 184.3 16.9 173 250-424 332-515 (562)
89 4glp_A Monocyte differentiatio 99.8 2.4E-19 8.1E-24 175.5 10.9 173 249-423 91-288 (310)
90 2o6s_A Variable lymphocyte rec 99.8 1.3E-18 4.5E-23 160.2 15.0 172 230-408 12-190 (208)
91 1jl5_A Outer protein YOPM; leu 99.8 5.4E-18 1.8E-22 175.6 21.3 176 230-422 96-272 (454)
92 2z7x_B TOLL-like receptor 1, v 99.8 5.2E-19 1.8E-23 184.2 13.8 78 230-309 50-128 (520)
93 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.5E-23 162.7 15.0 147 275-424 14-171 (220)
94 3j0a_A TOLL-like receptor 5; m 99.8 1.7E-18 5.8E-23 191.8 17.8 128 228-355 27-161 (844)
95 3j0a_A TOLL-like receptor 5; m 99.8 2.2E-18 7.4E-23 191.0 18.1 81 230-310 78-162 (844)
96 2xot_A Amphoterin-induced prot 99.8 1.4E-18 4.8E-23 174.1 14.2 175 222-399 11-203 (361)
97 4ecn_A Leucine-rich repeat pro 99.8 9.1E-19 3.1E-23 195.0 13.4 192 231-423 497-744 (876)
98 1jl5_A Outer protein YOPM; leu 99.8 1.4E-17 4.8E-22 172.4 20.7 158 230-401 136-293 (454)
99 4ay9_X Follicle-stimulating ho 99.8 3.6E-18 1.2E-22 170.2 14.8 178 249-426 30-221 (350)
100 4g8a_A TOLL-like receptor 4; l 99.8 2.4E-18 8.3E-23 181.4 14.0 169 250-418 53-235 (635)
101 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-17 5.7E-22 178.6 20.3 179 230-420 66-297 (622)
102 3cvr_A Invasion plasmid antige 99.8 1.4E-17 4.7E-22 177.6 19.3 159 250-425 60-225 (571)
103 3g06_A SSPH2 (leucine-rich rep 99.8 2.1E-17 7.3E-22 177.8 19.9 138 249-399 141-298 (622)
104 4ay9_X Follicle-stimulating ho 99.7 8.4E-17 2.9E-21 160.3 16.3 190 227-417 32-256 (350)
105 2ell_A Acidic leucine-rich nuc 99.7 2.9E-17 1E-21 146.1 8.9 131 271-401 23-163 (168)
106 2ast_B S-phase kinase-associat 99.7 3.7E-18 1.2E-22 167.5 1.7 190 230-421 75-285 (336)
107 2o6r_A Variable lymphocyte rec 99.7 5.1E-16 1.8E-20 139.3 15.2 127 251-379 9-139 (177)
108 1dce_A Protein (RAB geranylger 99.7 5.1E-18 1.7E-22 180.8 2.3 175 245-421 345-547 (567)
109 1w8a_A SLIT protein; signaling 99.7 2.8E-16 9.6E-21 143.6 12.8 126 252-379 11-141 (192)
110 2ca6_A RAN GTPase-activating p 99.7 3E-18 1E-22 172.3 -1.2 178 246-423 91-319 (386)
111 2wfh_A SLIT homolog 2 protein 99.7 5.2E-16 1.8E-20 142.3 13.8 124 252-378 13-140 (193)
112 2ca6_A RAN GTPase-activating p 99.7 2.9E-18 9.9E-23 172.4 -2.4 193 229-421 36-288 (386)
113 3goz_A Leucine-rich repeat-con 99.7 6.4E-18 2.2E-22 169.0 -0.4 193 229-421 26-267 (362)
114 2ell_A Acidic leucine-rich nuc 99.7 2.6E-16 9E-21 139.9 9.7 130 249-380 24-163 (168)
115 2ast_B S-phase kinase-associat 99.7 3.5E-18 1.2E-22 167.7 -2.9 170 249-418 70-258 (336)
116 1w8a_A SLIT protein; signaling 99.6 1.4E-15 4.8E-20 139.0 13.6 122 275-399 11-140 (192)
117 2wfh_A SLIT homolog 2 protein 99.6 1.9E-15 6.4E-20 138.6 14.2 121 275-398 13-139 (193)
118 2je0_A Acidic leucine-rich nuc 99.6 1.6E-16 5.3E-21 138.6 6.5 123 271-393 16-148 (149)
119 3goz_A Leucine-rich repeat-con 99.6 9.3E-18 3.2E-22 167.8 -1.7 195 228-422 54-299 (362)
120 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-16 4.3E-21 143.5 5.9 128 270-399 17-154 (176)
121 1a9n_A U2A', U2A'; complex (nu 99.6 2.4E-16 8.3E-21 141.7 6.1 132 244-378 14-154 (176)
122 2o6r_A Variable lymphocyte rec 99.6 8E-15 2.7E-19 131.5 16.1 123 274-399 9-138 (177)
123 4b8c_D Glucose-repressible alc 99.6 2.1E-16 7E-21 173.0 2.6 154 265-420 217-404 (727)
124 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4E-20 133.0 6.4 124 248-373 16-149 (149)
125 1ds9_A Outer arm dynein; leuci 99.6 2.1E-18 7.1E-23 158.1 -13.3 128 291-421 43-186 (198)
126 1z7x_W Ribonuclease inhibitor; 99.5 1.1E-16 3.8E-21 163.5 -3.7 173 250-422 200-413 (461)
127 3g39_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 126.9 12.0 105 251-357 11-117 (170)
128 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.7E-19 159.3 9.2 147 251-399 175-330 (727)
129 1z7x_W Ribonuclease inhibitor; 99.5 3.6E-16 1.2E-20 159.7 -3.3 103 319-421 200-327 (461)
130 2r9u_A Variable lymphocyte rec 99.5 6.7E-14 2.3E-18 126.2 11.9 104 252-357 15-120 (174)
131 3sb4_A Hypothetical leucine ri 99.5 7.6E-14 2.6E-18 137.5 13.2 174 238-414 82-328 (329)
132 3sb4_A Hypothetical leucine ri 99.5 1.5E-13 5.3E-18 135.3 11.5 175 248-425 48-315 (329)
133 1ds9_A Outer arm dynein; leuci 99.5 3.3E-16 1.1E-20 143.4 -7.7 134 260-399 36-186 (198)
134 1dce_A Protein (RAB geranylger 99.4 3.2E-13 1.1E-17 143.8 12.1 144 245-392 405-567 (567)
135 3g39_A Variable lymphocyte rec 99.4 1E-12 3.4E-17 117.8 12.9 103 274-379 11-117 (170)
136 4fdw_A Leucine rich hypothetic 99.4 1.7E-12 6E-17 132.3 16.1 185 230-422 162-360 (401)
137 2r9u_A Variable lymphocyte rec 99.4 1.9E-12 6.4E-17 116.7 12.8 102 275-379 15-120 (174)
138 2ifg_A High affinity nerve gro 99.3 3.1E-12 1.1E-16 126.3 10.6 104 252-357 11-118 (347)
139 3un9_A NLR family member X1; l 99.3 7.3E-14 2.5E-18 141.1 -5.9 124 296-419 101-251 (372)
140 2ifg_A High affinity nerve gro 99.2 1.8E-11 6E-16 120.9 10.3 102 275-379 11-118 (347)
141 4fdw_A Leucine rich hypothetic 99.2 1E-10 3.5E-15 119.2 15.6 173 237-417 146-333 (401)
142 3un9_A NLR family member X1; l 99.2 4.9E-13 1.7E-17 135.1 -3.8 172 249-420 72-283 (372)
143 3ogk_B Coronatine-insensitive 99.1 7.3E-12 2.5E-16 131.7 2.1 61 270-330 162-232 (592)
144 3ogk_B Coronatine-insensitive 99.0 2.7E-11 9.3E-16 127.4 0.4 57 247-304 190-251 (592)
145 2p1m_B Transport inhibitor res 99.0 4.1E-11 1.4E-15 125.8 -1.7 57 363-419 455-518 (594)
146 2p1m_B Transport inhibitor res 98.9 3.5E-11 1.2E-15 126.4 -3.8 53 362-415 287-346 (594)
147 2ra8_A Uncharacterized protein 98.9 4.3E-10 1.5E-14 113.2 3.9 57 363-419 251-319 (362)
148 1io0_A Tropomodulin; LRR prote 98.5 8.9E-09 3E-13 93.4 -0.4 39 271-309 35-78 (185)
149 2ra8_A Uncharacterized protein 98.5 8.3E-09 2.8E-13 103.8 -1.4 167 247-418 137-341 (362)
150 1io0_A Tropomodulin; LRR prote 98.5 1E-08 3.5E-13 93.0 -1.0 110 289-398 29-164 (185)
151 4fs7_A Uncharacterized protein 98.4 2.7E-06 9.4E-11 85.4 14.7 171 239-417 198-376 (394)
152 4gt6_A Cell surface protein; l 98.4 2.2E-06 7.6E-11 86.1 12.6 101 314-418 261-368 (394)
153 3rw6_A Nuclear RNA export fact 98.3 5.4E-08 1.8E-12 94.0 -0.6 75 294-370 168-257 (267)
154 4fs7_A Uncharacterized protein 98.3 4.6E-06 1.6E-10 83.8 13.4 174 238-417 151-353 (394)
155 3rw6_A Nuclear RNA export fact 98.3 2.5E-08 8.4E-13 96.4 -4.4 62 316-377 168-233 (267)
156 4h09_A Hypothetical leucine ri 98.2 1.8E-05 6.2E-10 78.6 13.7 25 236-260 145-169 (379)
157 4gt6_A Cell surface protein; l 98.1 5.9E-06 2E-10 83.0 9.4 133 261-397 253-390 (394)
158 4h09_A Hypothetical leucine ri 98.1 2.4E-05 8.1E-10 77.7 12.9 126 270-400 215-347 (379)
159 3e4g_A ATP synthase subunit S, 97.9 4.1E-06 1.4E-10 75.8 2.0 90 263-352 52-149 (176)
160 3e4g_A ATP synthase subunit S, 97.7 7.2E-06 2.5E-10 74.2 1.1 82 318-399 61-154 (176)
161 3rfe_A Platelet glycoprotein I 97.6 7.9E-05 2.7E-09 63.7 6.0 57 368-424 12-73 (130)
162 3rfe_A Platelet glycoprotein I 97.6 6.7E-05 2.3E-09 64.2 5.4 56 252-309 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 3.8E-05 1.3E-09 70.7 1.0 15 317-331 69-83 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.4 3.6E-05 1.2E-09 70.8 0.8 106 270-375 39-168 (197)
165 2lz0_A Uncharacterized protein 65.6 11 0.00036 30.1 5.5 45 282-327 6-52 (100)
166 2lz0_A Uncharacterized protein 59.9 23 0.0008 28.0 6.6 47 234-281 5-52 (100)
167 2xt2_A ALBG, MCBG-like protein 23.4 1.8E+02 0.006 24.9 6.8 15 297-311 70-84 (200)
No 1
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=7.1e-24 Score=204.65 Aligned_cols=197 Identities=19% Similarity=0.154 Sum_probs=178.4
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceec-ccccccCCCccEEEecCCC-cCccCccccCCCCCCcEEEccC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHR-VRSLIASGLNLQPNLEFVYLRD 305 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~L-P~~~~~l~~L~~LdLs~N~-i~~l~~~~l~~l~~L~~L~Ls~ 305 (428)
..+.+.++.+..+....|..+.+|++|++.+|.+..+ +..+..+.+|++|+|.+|. +..+.+..|..+++|++|+|.+
T Consensus 35 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~ 114 (285)
T 1ozn_A 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114 (285)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred eEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC
Confidence 5578999999998888999999999999999999988 5566688999999999997 8988888899999999999999
Q ss_pred CCCCCCcc--ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCcc--
Q 014262 306 NMLSTLEG--IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSI-- 379 (428)
Q Consensus 306 N~Ls~lp~--l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l-- 379 (428)
|.|..++. |..+++|++|+|++|.|....+..|..+++|++|+|++|.|+.++ .|..+++|+.|+|++|.|.++
T Consensus 115 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence 99999843 888999999999999999987778999999999999999999985 488999999999999999988
Q ss_pred -ccCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCccc
Q 014262 380 -AMASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 380 -~l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
.+..+++|++|+|++|.|++++ .|..+++|++|+|.+|+| |+|++
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 3788899999999999999987 488999999999999998 56654
No 2
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=2e-23 Score=214.28 Aligned_cols=197 Identities=17% Similarity=0.169 Sum_probs=138.8
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccc-cccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN 306 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~-~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N 306 (428)
..+.+.++.|..+....|.++.+|++|++.+|.+..++.. +..+.+|++|+|++|+|..+.+..|..+++|++|+|++|
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 4478888888888888899999999999999998887744 446888999999999999888888888889999999998
Q ss_pred CCCCCcc--ccCCCcccEEEccCC-CCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCcc----
Q 014262 307 MLSTLEG--IEILTRVKVLDLSFN-DFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI---- 379 (428)
Q Consensus 307 ~Ls~lp~--l~~L~~L~~LdLs~N-~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l---- 379 (428)
.|..++. |..+++|++|+|.+| .+..+.+..|.++++|++|+|++|.|+.++.+..+.+|+.|+|++|.|.++
T Consensus 147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 226 (440)
T 3zyj_A 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGS 226 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTT
T ss_pred cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhh
Confidence 8887753 666777777777663 344333445666666666666666666655555555555555555555444
Q ss_pred --------------------c---cCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCccc
Q 014262 380 --------------------A---MASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 380 --------------------~---l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
+ |..+++|++|+|++|+|+.++ .|..+++|++|+|.+|+| |+|++
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 1 445566666666666666654 356667777777777775 55554
No 3
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7.4e-23 Score=196.64 Aligned_cols=191 Identities=21% Similarity=0.232 Sum_probs=168.2
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceeccc-ccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~-~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
+.+.++.+..+...- ...++.|++.+|.+..++. .+..+.+|++|+|.+|.|..+.+..|..+++|++|+|++|.|
T Consensus 21 l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 21 VDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 556666655554322 2568999999999998886 455789999999999999999988889999999999999999
Q ss_pred CCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---c
Q 014262 309 STLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---M 381 (428)
Q Consensus 309 s~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l 381 (428)
..++ .|..+++|++|+|++|.|....+..|..+++|++|+|++|.|..++ .|..+++|+.|+|++|.|..++ |
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence 9986 3788999999999999999988888999999999999999999985 4889999999999999999984 7
Q ss_pred CCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCcc
Q 014262 382 ASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAH 423 (428)
Q Consensus 382 ~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~ 423 (428)
..+++|++|+|++|.|+.++ .|..+++|++|+|.+|+| |+|+
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 78899999999999999987 488899999999999998 6665
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=4.4e-23 Score=212.37 Aligned_cols=197 Identities=17% Similarity=0.139 Sum_probs=136.9
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceeccc-ccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN 306 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~-~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N 306 (428)
..|.+.++.|..+....|.++.+|++|++.+|.+..++. .+..+.+|++|+|.+|.|.++.+..|..+++|++|+|++|
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 457888888888888888888899999999998887764 4456888899999999988888888888888999999988
Q ss_pred CCCCCcc--ccCCCcccEEEccC-CCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccc---
Q 014262 307 MLSTLEG--IEILTRVKVLDLSF-NDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA--- 380 (428)
Q Consensus 307 ~Ls~lp~--l~~L~~L~~LdLs~-N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~--- 380 (428)
.|..++. |..+++|++|+|++ |.+..+.+..|.++.+|++|+|++|.|..++.+..+++|+.|+|++|.|.++.
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 237 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGS 237 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGG
T ss_pred CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCccc
Confidence 8887753 66677777777776 33444444456666666666666666666666666666666666666555541
Q ss_pred ------------------------cCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCccc
Q 014262 381 ------------------------MASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 381 ------------------------l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
|..+++|++|+|++|+|+.++ .|..+++|++|+|.+|+| |+|++
T Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 344455555555555555544 245556666666666665 45543
No 5
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.4e-23 Score=206.14 Aligned_cols=188 Identities=19% Similarity=0.211 Sum_probs=168.7
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.++.+..+. .|..+.+|++|++.+|.+..++. +..+.+|++|+|++|.|.++. .|..+++|++|+|++|.|.
T Consensus 46 L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 46 LSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQIT 120 (308)
T ss_dssp EECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCCC
T ss_pred EEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCCCC
Confidence 456666666654 57788999999999999999888 778899999999999999874 4899999999999999999
Q ss_pred CCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccc-cCCCCCcc
Q 014262 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQ 388 (428)
Q Consensus 310 ~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~-l~~L~~L~ 388 (428)
.++.+..+++|++|+|++|.|.+..+ +..+++|++|+|++|.|.+++.+..+++|+.|+|++|.|.+++ +..+++|+
T Consensus 121 ~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 198 (308)
T 1h6u_A 121 DVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLI 198 (308)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCC
T ss_pred CchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCC
Confidence 99889999999999999999998543 8899999999999999999977999999999999999999984 88999999
Q ss_pred EEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCccc
Q 014262 389 VLAASKNKISTLKGFPHLPLLEVSILCIARICIAHL 424 (428)
Q Consensus 389 ~L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N~I~~~~l 424 (428)
+|+|++|+|.+++.+..+++|++|+|.+|+|+..+.
T Consensus 199 ~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 199 EVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp EEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred EEEccCCccCccccccCCCCCCEEEccCCeeecCCe
Confidence 999999999999889999999999999999977554
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=8.9e-23 Score=194.01 Aligned_cols=169 Identities=25% Similarity=0.335 Sum_probs=156.8
Q ss_pred CCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccC
Q 014262 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSF 327 (428)
Q Consensus 250 ~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~ 327 (428)
..+.++|.++++..+|..+ ...|+.|+|++|.|.++.+..|.++++|++|+|++|.|..++. |..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4578999999999999987 5799999999999999999899999999999999999999864 88999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCCCC-
Q 014262 328 NDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKISTLK- 401 (428)
Q Consensus 328 N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~lp- 401 (428)
|.|....+..|..+++|++|+|++|.|..++ .|..+++|++|+|++|+|..++ |..+++|++|+|++|.|+.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 9999988888999999999999999999995 4789999999999999999984 778899999999999999986
Q ss_pred -CCCCCCCCcEEEccCCCCC
Q 014262 402 -GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 402 -~l~~L~~L~~L~Ls~N~I~ 420 (428)
.|..+++|++|+|.+|+|.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBC
T ss_pred HHHhCCCCCCEEEeeCCcee
Confidence 5889999999999999984
No 7
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=7.6e-23 Score=199.60 Aligned_cols=190 Identities=23% Similarity=0.282 Sum_probs=161.0
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecc-cccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP-~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
+.+.++.+..+...- ...++.|++.+|.+..++ ..+..+.+|++|+|.+|.|.++.. +..+++|++|+|++|.|
T Consensus 15 l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 15 VNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQL 89 (290)
T ss_dssp EECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCC
T ss_pred EECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcC
Confidence 455555555554332 257899999999998775 455578999999999999998866 47889999999999999
Q ss_pred CCCcc-ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cC
Q 014262 309 STLEG-IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MA 382 (428)
Q Consensus 309 s~lp~-l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~ 382 (428)
..++. +..+++|++|+|++|+|....+..|..+++|++|+|++|+|..++ .|..+++|+.|+|++|+|+.++ |.
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 169 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence 99875 788999999999999999988888999999999999999999985 4788999999999999999985 67
Q ss_pred CCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCC-CCccc
Q 014262 383 SQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 383 ~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
.+++|++|+|++|+|+.+| .+..+..|++|+|.+|+| |.|++
T Consensus 170 ~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 170 GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence 7899999999999999987 677788999999999998 56654
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.8e-22 Score=193.94 Aligned_cols=174 Identities=22% Similarity=0.325 Sum_probs=160.0
Q ss_pred CCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEcc
Q 014262 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLS 326 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs 326 (428)
...+.++|.++++..+|..+ ...|++|+|++|.|.++.+..|..+++|++|+|++|.|..++. |..+++|++|+|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45689999999999999877 5789999999999999998889999999999999999999864 6889999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCCCC
Q 014262 327 FNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKISTLK 401 (428)
Q Consensus 327 ~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~lp 401 (428)
+|.|....+..|..+++|++|+|.+|.|..++ .|..+++|++|+|++|.|..++ |..+++|++|+|++|.|+.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 99999988888999999999999999999985 4889999999999999999985 778999999999999999987
Q ss_pred --CCCCCCCCcEEEccCCCCCCccc
Q 014262 402 --GFPHLPLLEVSILCIARICIAHL 424 (428)
Q Consensus 402 --~l~~L~~L~~L~Ls~N~I~~~~l 424 (428)
.|..+++|++|+|.+|+|..++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hhHhccCCCcCEEECCCCcCCcCCH
Confidence 48899999999999999977654
No 9
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.2e-23 Score=197.65 Aligned_cols=196 Identities=20% Similarity=0.163 Sum_probs=172.5
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceeccc-ccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN 306 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~-~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N 306 (428)
..+.+.++.+..+....|.++.+|++|++.+|.+..++. .+..+.+|++|+|++|.|.++.+..|..+++|++|+|.+|
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 457889999998888899999999999999999998876 4557899999999999999999888999999999999999
Q ss_pred CCCCCcc--ccCCCcccEEEccCCCCCCC-CCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCC----EEEcCCCcCC
Q 014262 307 MLSTLEG--IEILTRVKVLDLSFNDFKGP-GFEPLENCKALQQLYLAGNQITSLG--SLPELPNLE----FLSVAQNKLK 377 (428)
Q Consensus 307 ~Ls~lp~--l~~L~~L~~LdLs~N~L~~~-~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~----~L~Ls~N~L~ 377 (428)
.+..++. +..+++|++|+|++|.|.+. +|..|..+++|++|+|++|.|+.++ .+..+.+|+ .|+|++|.|.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence 9999864 88999999999999999874 5889999999999999999999874 455555555 8999999999
Q ss_pred ccc--cCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCcc
Q 014262 378 SIA--MASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAH 423 (428)
Q Consensus 378 ~l~--l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~ 423 (428)
.++ .....+|++|+|++|.|+.++ .|..+++|++|+|.+|+| |.|+
T Consensus 191 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 191 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 985 334458999999999999987 378999999999999998 4664
No 10
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.3e-22 Score=196.13 Aligned_cols=179 Identities=22% Similarity=0.192 Sum_probs=162.0
Q ss_pred CCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEE
Q 014262 244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVL 323 (428)
Q Consensus 244 ~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~L 323 (428)
.+..+.++++++|.++++..+|..+ ...++.|+|++|.|.++.+..|..+++|++|+|++|.|+.++....+++|++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred cccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 3566778999999999999999887 57899999999999999988899999999999999999999877899999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCC
Q 014262 324 DLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKIS 398 (428)
Q Consensus 324 dLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt 398 (428)
+|++|.|.. +|..+..+++|++|+|++|+|+.++ .|..+++|++|+|++|+|..++ |..+++|+.|+|++|+|+
T Consensus 83 ~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 999999986 6778899999999999999999985 5899999999999999999985 678899999999999999
Q ss_pred CCC--CCCCCCCCcEEEccCCCCCCcccc
Q 014262 399 TLK--GFPHLPLLEVSILCIARICIAHLL 425 (428)
Q Consensus 399 ~lp--~l~~L~~L~~L~Ls~N~I~~~~l~ 425 (428)
.++ .|..+++|++|+|++|+|..++..
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 987 378899999999999999876543
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=9.5e-23 Score=209.17 Aligned_cols=170 Identities=17% Similarity=0.179 Sum_probs=138.9
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceeccccc-ccCCCccEEEecC-CCcCccCccccCCCCCCcEEEccCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDNM 307 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~-~~l~~L~~LdLs~-N~i~~l~~~~l~~l~~L~~L~Ls~N~ 307 (428)
|.+.++.+..+....|.++.+|++|++.+|.+..++... ..+.+|++|+|.+ |.+..+.+..|.++++|++|+|++|.
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 456666666666666666666777777777766666533 3566677777766 44555555668888899999999999
Q ss_pred CCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cC
Q 014262 308 LSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MA 382 (428)
Q Consensus 308 Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~ 382 (428)
|+.++.+..+++|++|+|++|.|.+..+..|.++++|+.|+|.+|.|..++ .|..+++|+.|+|++|+|+.++ |.
T Consensus 197 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 999999999999999999999999988999999999999999999999884 6889999999999999999985 67
Q ss_pred CCCCccEEEccCCCCCC
Q 014262 383 SQPRLQVLAASKNKIST 399 (428)
Q Consensus 383 ~L~~L~~L~Ls~N~Lt~ 399 (428)
.+++|+.|+|.+|.+..
T Consensus 277 ~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNC 293 (440)
T ss_dssp SCTTCCEEECCSSCEEC
T ss_pred cccCCCEEEcCCCCccC
Confidence 88999999999999864
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=1.2e-22 Score=209.04 Aligned_cols=169 Identities=16% Similarity=0.171 Sum_probs=124.2
Q ss_pred ccCCCcccccCCCCCCCCCCCceeeeCCCCceeccccc-ccCCCccEEEecC-CCcCccCccccCCCCCCcEEEccCCCC
Q 014262 231 RNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 231 ~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~-~~l~~L~~LdLs~-N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
.+.++.+..+....|.++.+|++|++.+|.+..++... ..+.+|++|+|.+ |.+..+....|..+++|++|+|++|.|
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 34444444444444444444444444444444444322 2344444444444 333334444567778888888888888
Q ss_pred CCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCC
Q 014262 309 STLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MAS 383 (428)
Q Consensus 309 s~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~ 383 (428)
..++.+..+++|++|+|++|.|.+..+..|.++++|++|+|.+|.|..+. .|..+++|+.|+|++|+|+.++ +..
T Consensus 209 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred cccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 88888889999999999999999988999999999999999999999883 6889999999999999999985 678
Q ss_pred CCCccEEEccCCCCCC
Q 014262 384 QPRLQVLAASKNKIST 399 (428)
Q Consensus 384 L~~L~~L~Ls~N~Lt~ 399 (428)
+++|+.|+|.+|.+..
T Consensus 289 l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEccCCCcCC
Confidence 8999999999999775
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=7.4e-22 Score=190.47 Aligned_cols=176 Identities=21% Similarity=0.226 Sum_probs=161.1
Q ss_pred CCCCceeeeCCCCceecccc-cccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC-CCCCc--cccCCCcccEE
Q 014262 248 QRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LSTLE--GIEILTRVKVL 323 (428)
Q Consensus 248 l~~L~~L~L~~n~L~~LP~~-~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~-Ls~lp--~l~~L~~L~~L 323 (428)
..+++.|++.+|.+..++.. +..+.+|++|+|.+|.|.++.+..|..+++|++|+|++|. +..++ .|..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 46899999999999988854 5578999999999999999989899999999999999997 88883 48899999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCC
Q 014262 324 DLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKIS 398 (428)
Q Consensus 324 dLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt 398 (428)
+|++|.|.+..+..|.++++|++|+|++|.|..++ .|..+++|++|+|++|.|+.++ +..+++|++|+|++|.|.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999999988889999999999999999999985 4889999999999999999984 778999999999999999
Q ss_pred CC-C-CCCCCCCCcEEEccCCCCCCcc
Q 014262 399 TL-K-GFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 399 ~l-p-~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
.+ + .|..+++|++|+|.+|.|...+
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCC
Confidence 86 3 7899999999999999998765
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2e-22 Score=196.25 Aligned_cols=191 Identities=20% Similarity=0.139 Sum_probs=103.7
Q ss_pred CcccCCCcccccCCCCCCCCCCCceeeeCCCCceec---ccccccCCCccEEEecCCCcCcc------------------
Q 014262 229 GLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVL---PQVEIKAGDDVRLDLRGHRVRSL------------------ 287 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~L---P~~~~~l~~L~~LdLs~N~i~~l------------------ 287 (428)
.+.+.++.+..+....|..+.+|++|++.+|.+..+ +..++.+.+|++|+|++|.|..+
T Consensus 32 ~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred EEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence 456666666666655566666666666666666543 33333455555555555555543
Q ss_pred -----Cc-cccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCC-CCCCCCCCCCCCcEEEccCCcCCCC-
Q 014262 288 -----IA-SGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKG-PGFEPLENCKALQQLYLAGNQITSL- 357 (428)
Q Consensus 288 -----~~-~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~-~~p~~l~~L~~L~~L~Ls~N~Lt~l- 357 (428)
.+ ..|..+++|++|+|++|.+..+. .|..+++|++|+|++|.+.+ ..|..|..+++|++|+|++|.|.++
T Consensus 112 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence 32 23444444444444444444331 14444555555555555543 3444555555555555555555554
Q ss_pred -CCCCCCCCCCEEEcCCCcCCcc---ccCCCCCccEEEccCCCCCCCC--CCCCCC-CCcEEEccCCCC
Q 014262 358 -GSLPELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASKNKISTLK--GFPHLP-LLEVSILCIARI 419 (428)
Q Consensus 358 -~~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~-~L~~L~Ls~N~I 419 (428)
..|..+++|+.|+|++|.|.++ .+..+++|++|+|++|.|.++. .+..++ +|++|+|++|+|
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 2455556666666666665555 2455566666666666666532 455553 666666666666
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=9.9e-22 Score=189.15 Aligned_cols=176 Identities=23% Similarity=0.252 Sum_probs=157.1
Q ss_pred CCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccE
Q 014262 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKV 322 (428)
Q Consensus 245 fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~ 322 (428)
+..+.+++.|++.++.+..++. +..+.+|++|+|.+|.|.++. .|..+++|++|+|++|.|+.++. |..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 4456789999999999998775 556899999999999999864 58999999999999999999865 789999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCC
Q 014262 323 LDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKI 397 (428)
Q Consensus 323 LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~L 397 (428)
|+|++|.|.+..+..|..+++|++|+|++|.|..++ .|..+++|+.|+|++|.|++++ +..+++|++|+|++|.|
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 999999999988888999999999999999999985 3789999999999999999984 67899999999999999
Q ss_pred CCCC--CCCCCCCCcEEEccCCCC-CCcc
Q 014262 398 STLK--GFPHLPLLEVSILCIARI-CIAH 423 (428)
Q Consensus 398 t~lp--~l~~L~~L~~L~Ls~N~I-~~~~ 423 (428)
++++ .|..+++|++|+|.+|+| +.|+
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 9986 388999999999999997 4444
No 16
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.88 E-value=1.8e-22 Score=196.92 Aligned_cols=176 Identities=25% Similarity=0.319 Sum_probs=161.3
Q ss_pred CCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEE
Q 014262 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD 324 (428)
Q Consensus 245 fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~Ld 324 (428)
+..+.+++.|++.+|.+..++. +..+.+|++|+|++|.|.++.+ |..+++|++|+|++|.|..++.+..+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChhhccCCCCCEEE
Confidence 3446788999999999999875 5678999999999999999877 999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCcc-ccCCCCCccEEEccCCCCCCCCCC
Q 014262 325 LSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI-AMASQPRLQVLAASKNKISTLKGF 403 (428)
Q Consensus 325 Ls~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l-~l~~L~~L~~L~Ls~N~Lt~lp~l 403 (428)
|++|.|.+. ..+..+++|++|+|++|.|..++.+..+++|++|+|++|.|.++ ++..+++|++|+|++|.|++++.+
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l 196 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRAL 196 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGG
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhh
Confidence 999999984 57889999999999999999998899999999999999999998 589999999999999999999999
Q ss_pred CCCCCCcEEEccCCCCCCcccc
Q 014262 404 PHLPLLEVSILCIARICIAHLL 425 (428)
Q Consensus 404 ~~L~~L~~L~Ls~N~I~~~~l~ 425 (428)
..+++|+.|+|.+|+|...+..
T Consensus 197 ~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp TTCTTCSEEEEEEEEEECCCEE
T ss_pred ccCCCCCEEECcCCcccCCccc
Confidence 9999999999999998765543
No 17
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=7.8e-23 Score=200.70 Aligned_cols=194 Identities=16% Similarity=0.075 Sum_probs=159.6
Q ss_pred CcccCCCcccccCCCCC--CCCCCCceeeeCCCCceecccccccC-----CCccEEEecCCCcCccCccccCCCCCCcEE
Q 014262 229 GLRNGSLSSSLDRSSNL--SGQRRAGTPQSKDSRFIVLPQVEIKA-----GDDVRLDLRGHRVRSLIASGLNLQPNLEFV 301 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~f--s~l~~L~~L~L~~n~L~~LP~~~~~l-----~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L 301 (428)
.+.+.++.+.......+ ..+.+|++|++.+|.+..+|..+..+ .+|++|+|++|+|.++.+..|..+++|++|
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEE
Confidence 35666666664433443 78889999999999999887666555 899999999999999998889999999999
Q ss_pred EccCCCCCCC----ccc--cCCCcccEEEccCCCCCCC---CCCCCCCCCCCcEEEccCCcCCCC---CCCCCCCCCCEE
Q 014262 302 YLRDNMLSTL----EGI--EILTRVKVLDLSFNDFKGP---GFEPLENCKALQQLYLAGNQITSL---GSLPELPNLEFL 369 (428)
Q Consensus 302 ~Ls~N~Ls~l----p~l--~~L~~L~~LdLs~N~L~~~---~p~~l~~L~~L~~L~Ls~N~Lt~l---~~l~~L~~L~~L 369 (428)
+|++|++.+. +.+ ..+++|++|+|++|.|.+. ....+..+++|++|+|++|.|.+. +.+..+++|++|
T Consensus 179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258 (312)
T ss_dssp ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence 9999997653 233 7899999999999999842 123345788999999999999985 356678999999
Q ss_pred EcCCCcCCccccCCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCc
Q 014262 370 SVAQNKLKSIAMASQPRLQVLAASKNKISTLKGFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 370 ~Ls~N~L~~l~l~~L~~L~~L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
+|++|.|+.++..-.++|++|+|++|+|+++|.+..+++|++|+|.+|+|...
T Consensus 259 ~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 259 NLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp ECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTCC
T ss_pred ECCCCccChhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCCC
Confidence 99999999886443489999999999999998899999999999999999764
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.3e-22 Score=197.42 Aligned_cols=169 Identities=19% Similarity=0.182 Sum_probs=145.5
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceeccc--ccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQ--VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM 307 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~--~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~ 307 (428)
+.+.++.+..+.. .|.++.+|++|++.+|.+..++. .+..+.+|++|+|.+|.+.++.+..|..+++|++|+|.+|.
T Consensus 83 L~Ls~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 4455555444432 36778889999999999888775 55678999999999999999988889999999999999999
Q ss_pred CCC--Cc-cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc--
Q 014262 308 LST--LE-GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA-- 380 (428)
Q Consensus 308 Ls~--lp-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~-- 380 (428)
+.. ++ .+..+++|++|+|++|.|.+..+..|..+++|++|+|++|.|..++ .+..+++|++|+|++|.|.++.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 986 44 4889999999999999999988899999999999999999999985 5788999999999999999873
Q ss_pred -cCCC-CCccEEEccCCCCCC
Q 014262 381 -MASQ-PRLQVLAASKNKIST 399 (428)
Q Consensus 381 -l~~L-~~L~~L~Ls~N~Lt~ 399 (428)
+..+ .+|++|+|++|.|..
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEEC
T ss_pred HHHhhhccCCEEEccCCCeec
Confidence 6666 489999999999986
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=5.9e-22 Score=194.63 Aligned_cols=174 Identities=25% Similarity=0.314 Sum_probs=160.8
Q ss_pred CCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEE
Q 014262 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD 324 (428)
Q Consensus 245 fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~Ld 324 (428)
+..+.+++.|++.++++..++ .+..+.+|++|+|++|.|.++.+ |..+++|++|+|++|.|..++.+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEE
Confidence 345678999999999999988 46679999999999999999877 999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccc-cCCCCCccEEEccCCCCCCCCCC
Q 014262 325 LSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLKGF 403 (428)
Q Consensus 325 Ls~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~-l~~L~~L~~L~Ls~N~Lt~lp~l 403 (428)
|++|.|.+. + .+..+++|++|+|++|.|..++.+..+++|++|+|++|.|.+++ +..+++|++|+|++|.|++++.+
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l 191 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL 191 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhh
Confidence 999999984 3 48999999999999999999988999999999999999999984 89999999999999999999889
Q ss_pred CCCCCCcEEEccCCCCCCcc
Q 014262 404 PHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 404 ~~L~~L~~L~Ls~N~I~~~~ 423 (428)
..+++|++|+|++|+|...+
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCG
T ss_pred cCCCCCCEEEccCCccCccc
Confidence 99999999999999997664
No 20
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=5.5e-22 Score=186.78 Aligned_cols=189 Identities=15% Similarity=0.099 Sum_probs=129.9
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCC-ceecccc-cccCCCccEEEecC-CCcCccCccccCCCCCCcEEEcc
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSR-FIVLPQV-EIKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLR 304 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~-L~~LP~~-~~~l~~L~~LdLs~-N~i~~l~~~~l~~l~~L~~L~Ls 304 (428)
..+.+.++.+..+....|.++.+|++|++.+|. +..++.. +..+.+|++|+|.+ |.|.++.+..|.++++|++|+|.
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 345666777777766677777777777777775 6666653 34667777777776 77777776667777777777777
Q ss_pred CCCCCCCccccCCCccc---EEEccCC-CCCCCCCCCCCCCCCCc-EEEccCCcCCCCC-CCCCCCCCCEEEcCCCc-CC
Q 014262 305 DNMLSTLEGIEILTRVK---VLDLSFN-DFKGPGFEPLENCKALQ-QLYLAGNQITSLG-SLPELPNLEFLSVAQNK-LK 377 (428)
Q Consensus 305 ~N~Ls~lp~l~~L~~L~---~LdLs~N-~L~~~~p~~l~~L~~L~-~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~-L~ 377 (428)
+|.|+.+|.|..+.+|+ +|+|++| .|..+.+..|.++.+|+ +|+|++|.|..++ ......+|+.|+|++|. |+
T Consensus 114 ~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 114 NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT 193 (239)
T ss_dssp EECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCC
T ss_pred CCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcc
Confidence 77777776666666666 7777777 77766666677777777 7777777777664 22222677777777773 77
Q ss_pred ccc---cCCC-CCccEEEccCCCCCCCCCCCCCCCCcEEEccCC
Q 014262 378 SIA---MASQ-PRLQVLAASKNKISTLKGFPHLPLLEVSILCIA 417 (428)
Q Consensus 378 ~l~---l~~L-~~L~~L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N 417 (428)
.++ |..+ ++|+.|+|++|+|+.++.. .+.+|++|++.++
T Consensus 194 ~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 194 VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC
T ss_pred cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccCc
Confidence 663 5566 6777777777777776643 5666777777665
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.9e-21 Score=191.47 Aligned_cols=189 Identities=19% Similarity=0.196 Sum_probs=117.5
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.++.+..+....|..+.+|++|++.+|.+..+|..+ ...|++|+|.+|.|.++.+..|.++++|++|+|.+|.+.
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 455555555555556666666666666666666666555 256666666666666666666677777777777777765
Q ss_pred CC----ccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---
Q 014262 310 TL----EGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA--- 380 (428)
Q Consensus 310 ~l----p~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~--- 380 (428)
.. ..+..+++|++|+|++|.|.. +|..+. ++|++|+|++|.|..+. .|..+++|+.|+|++|.|.+++
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 31 235566666666666666654 232222 55666666666666552 4566666777777777666652
Q ss_pred cCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCCCcc
Q 014262 381 MASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 381 l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
+..+++|++|+|++|.|+.+| .+..+++|++|+|.+|+|+..+
T Consensus 236 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccC
Confidence 555666777777777776665 4666667777777777665543
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=200.28 Aligned_cols=123 Identities=16% Similarity=0.109 Sum_probs=58.4
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceec-ccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~L-P~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
|.+.++.+..+....|..+.+|++|++.+|.+..+ |..+..+.+|++|+|.+|.|.++++..|.++++|++|+|++|.|
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence 45555555555555555555555555555555544 33333445555555555555555444455555555555555554
Q ss_pred CCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCC
Q 014262 309 STLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGN 352 (428)
Q Consensus 309 s~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N 352 (428)
..+. .|..+++|++|+|++|.|.+..+..|.++++|++|+|.+|
T Consensus 117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 4432 2344444444444444444333333333333333333333
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=199.55 Aligned_cols=196 Identities=18% Similarity=0.197 Sum_probs=138.9
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceeccc-ccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN 306 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~-~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N 306 (428)
..+.+.++.+..+....|.++.+|++|++.+|.+..++. .+..+.+|++|+|++|.|.++.+..|.++++|++|+|++|
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 446777777777777777778888888888887776654 4556777888888888887777766777788888888888
Q ss_pred CCCCCcc---ccCCCcccEEEccCC-CCCCCCCCCCCCCCCCcEEEccCCcCCCC--CCCCCCC----------------
Q 014262 307 MLSTLEG---IEILTRVKVLDLSFN-DFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELP---------------- 364 (428)
Q Consensus 307 ~Ls~lp~---l~~L~~L~~LdLs~N-~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~---------------- 364 (428)
.|..++. |..+++|++|+|++| .+....+..|.++++|++|+|++|.+.++ ..+..++
T Consensus 135 ~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 7777754 667777777777777 36655566677777777777777777665 2444444
Q ss_pred --------CCCEEEcCCCcCCccc----------------------------------cCCCCCccEEEccCCCCCCCCC
Q 014262 365 --------NLEFLSVAQNKLKSIA----------------------------------MASQPRLQVLAASKNKISTLKG 402 (428)
Q Consensus 365 --------~L~~L~Ls~N~L~~l~----------------------------------l~~L~~L~~L~Ls~N~Lt~lp~ 402 (428)
+|+.|+|++|.|.+++ +..+++|++|+|++|+|+.++.
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~ 294 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence 4555555555554421 2356788889999998888873
Q ss_pred --CCCCCCCcEEEccCCCC-CCcc
Q 014262 403 --FPHLPLLEVSILCIARI-CIAH 423 (428)
Q Consensus 403 --l~~L~~L~~L~Ls~N~I-~~~~ 423 (428)
|..+++|++|+|++|+| +.|+
T Consensus 295 ~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcCCCCCEEEeeCCCccCcCC
Confidence 57888999999999987 4443
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.2e-21 Score=191.42 Aligned_cols=190 Identities=18% Similarity=0.216 Sum_probs=97.5
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceec-ccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~L-P~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
+.+.++.+..+....|.++.+|++|++.+|.+..+ |..+..+.+|++|+|++|.|..++...+ ++|++|+|.+|.|
T Consensus 59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i 135 (332)
T 2ft3_A 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRI 135 (332)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCC
T ss_pred EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCcc
Confidence 45555555555555555666666666666665544 3344455555555555555554433222 4455555555555
Q ss_pred CCCcc--ccCCCcccEEEccCCCCCC--CCCCCCCCC--------------------CCCcEEEccCCcCCCCC--CCCC
Q 014262 309 STLEG--IEILTRVKVLDLSFNDFKG--PGFEPLENC--------------------KALQQLYLAGNQITSLG--SLPE 362 (428)
Q Consensus 309 s~lp~--l~~L~~L~~LdLs~N~L~~--~~p~~l~~L--------------------~~L~~L~Ls~N~Lt~l~--~l~~ 362 (428)
..++. |..+++|++|+|++|.+.. ..+..|..+ .+|++|+|++|.|..++ .|..
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR 215 (332)
T ss_dssp CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT
T ss_pred CccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcC
Confidence 54432 4445555555555554431 222222222 24444444444444442 3555
Q ss_pred CCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCCCc
Q 014262 363 LPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 363 L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
+++|+.|+|++|.|.+++ +..+++|++|+|++|.|+.+| .+..+++|++|+|++|+|...
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence 555666666666555552 445555666666666666554 355555666666666655444
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2.4e-21 Score=195.04 Aligned_cols=61 Identities=26% Similarity=0.321 Sum_probs=27.4
Q ss_pred CCCCCCCCEEEcCCCcCCcc---ccCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCC
Q 014262 360 LPELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 360 l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~ 420 (428)
+..+++|++|+|++|.|.++ .+..+++|++|+|++|+|+.++ .+..+++|++|+|++|+|.
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce
Confidence 33444444455555444443 1344444444444444444443 2333444444444444443
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=7.9e-22 Score=195.53 Aligned_cols=188 Identities=16% Similarity=0.133 Sum_probs=158.8
Q ss_pred CcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 229 GLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
.+.+.++.+..+.. .+..+.+|++|++.+|.+..+|..+..+.+|++|+|++|.|..+ +..|..+++|++|+|++|++
T Consensus 85 ~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 85 ALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPE 162 (328)
T ss_dssp EEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEEEETT
T ss_pred EEEccCCCchhcCh-hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEECCCCCC
Confidence 45777777776654 35568899999999999999999888899999999999999965 55689999999999999765
Q ss_pred C-CCcc-c---------cCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcC
Q 014262 309 S-TLEG-I---------EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKL 376 (428)
Q Consensus 309 s-~lp~-l---------~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L 376 (428)
. .+|. + ..+++|++|+|++|.|. .+|..|..+++|++|+|++|.|.+++ .+..+++|++|+|++|.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTT
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcc
Confidence 4 4443 3 34999999999999998 47888999999999999999999985 688899999999999887
Q ss_pred Ccc---ccCCCCCccEEEccCCCCCC-CC-CCCCCCCCcEEEccCCCC
Q 014262 377 KSI---AMASQPRLQVLAASKNKIST-LK-GFPHLPLLEVSILCIARI 419 (428)
Q Consensus 377 ~~l---~l~~L~~L~~L~Ls~N~Lt~-lp-~l~~L~~L~~L~Ls~N~I 419 (428)
.+. .+..+++|++|+|++|.+.+ +| .|..+++|++|+|++|++
T Consensus 242 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 765 37889999999999987665 56 788999999999999886
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.5e-22 Score=199.17 Aligned_cols=185 Identities=16% Similarity=0.157 Sum_probs=128.5
Q ss_pred CcccccCCCCCCCCCCCceeeeCCCCce-ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC-CCc
Q 014262 235 LSSSLDRSSNLSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS-TLE 312 (428)
Q Consensus 235 ~si~~l~~~~fs~l~~L~~L~L~~n~L~-~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls-~lp 312 (428)
+.+...-...|..+.+|++|++.+|.+. .+|..+..+.+|++|+|++|.|.+..+..|..+++|++|+|++|.|. .++
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 3333333345666677777777777776 66666666777777777777777666666777777777777777776 344
Q ss_pred -cccCCC-cccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcCCcc--ccCCCCC
Q 014262 313 -GIEILT-RVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSI--AMASQPR 386 (428)
Q Consensus 313 -~l~~L~-~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L~~l--~l~~L~~ 386 (428)
.+..+. .|++|+|++|.|.+.+|..|..+. |++|+|++|.|.+. ..|..+++|+.|+|++|.|.+. .+..+++
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 245 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTT
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCC
Confidence 366665 777777777777766666666665 77777777777654 2567777788888888877755 2666778
Q ss_pred ccEEEccCCCCC-CCC-CCCCCCCCcEEEccCCCCC
Q 014262 387 LQVLAASKNKIS-TLK-GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 387 L~~L~Ls~N~Lt-~lp-~l~~L~~L~~L~Ls~N~I~ 420 (428)
|++|+|++|.|+ .+| .|..+++|++|+|++|+|+
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 888888888877 345 5777788888888888764
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.5e-21 Score=187.86 Aligned_cols=183 Identities=20% Similarity=0.182 Sum_probs=159.1
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.++.+..+. .|..+.+|++|++.+|.+..++ .+..+.+|++|+|.+|.|.++.+..|..+++|++|+|.+|.|.
T Consensus 46 L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 122 (272)
T 3rfs_A 46 IIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122 (272)
T ss_dssp EECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eeeCCCCccccc--ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC
Confidence 455555555443 4777889999999999999875 5667899999999999999999988999999999999999999
Q ss_pred CCcc--ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cC
Q 014262 310 TLEG--IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MA 382 (428)
Q Consensus 310 ~lp~--l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~ 382 (428)
.++. |..+++|++|+|++|.|.+..+..|..+++|++|+|++|.|++++ .|..+++|++|+|++|.|.+++ +.
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence 9864 889999999999999999988888899999999999999999985 3789999999999999999984 78
Q ss_pred CCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCC
Q 014262 383 SQPRLQVLAASKNKISTLKGFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 383 ~L~~L~~L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N~I~ 420 (428)
.+++|++|+|.+|.+.. .++.|++|++.+|.+.
T Consensus 203 ~l~~L~~L~l~~N~~~~-----~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWDC-----TCPGIRYLSEWINKHS 235 (272)
T ss_dssp TCTTCCEEECCSSCBCC-----CTTTTHHHHHHHHHTG
T ss_pred CCcCCCEEEccCCCccc-----cCcHHHHHHHHHHhCC
Confidence 89999999999998763 4666777777777653
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.4e-21 Score=196.70 Aligned_cols=193 Identities=19% Similarity=0.195 Sum_probs=133.0
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceeccc-ccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~-~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
+.+.++.+..+....|..+.+|++|++.+|.+..++. .+..+.+|++|+|.+|.|.++.+..|..+++|++|+|++|.|
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc
Confidence 4455555555555556667778888888888877765 445677888888888888887777777888888888888888
Q ss_pred CCCcc--ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCC-----------------------
Q 014262 309 STLEG--IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPEL----------------------- 363 (428)
Q Consensus 309 s~lp~--l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L----------------------- 363 (428)
..++. |..+++|++|+|++|.|.+..+..|..+++|++|+|++|.|+.++ +..+
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~ 208 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVE 208 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCS
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeecccccccccCCCCcce
Confidence 87764 577888888888888887777777778888888888888776652 1111
Q ss_pred -----------------CCCCEEEcCCCcCCccc-cCCCCCccEEEccCCCCCCC-C-CCCCCCCCcEEEccCCCCCCcc
Q 014262 364 -----------------PNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTL-K-GFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 364 -----------------~~L~~L~Ls~N~L~~l~-l~~L~~L~~L~Ls~N~Lt~l-p-~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
.+|+.|+|++|.|.+++ +..+++|++|+|++|.|.++ + .|..+++|++|+|++|+|..++
T Consensus 209 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (390)
T 3o6n_A 209 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288 (390)
T ss_dssp EEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE
T ss_pred EEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC
Confidence 23444444444444442 55566777777777777664 2 5667777777777777765543
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=4.2e-22 Score=198.22 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=142.8
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccc-cccCCCccEEEecCCCcCccCc-cccCCCCCCcEEEccC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIA-SGLNLQPNLEFVYLRD 305 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~-~~~l~~L~~LdLs~N~i~~l~~-~~l~~l~~L~~L~Ls~ 305 (428)
..+.+.++.+..+....|.++.+|++|++.+|.+..++.. +..+.+|++|+|++|.|.++.. ..|..+++|++|+|++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCC
Confidence 3467888888888888899999999999999999998887 5578999999999999998877 6788999999999999
Q ss_pred C-CCCCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcC------------------------CCCC
Q 014262 306 N-MLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQI------------------------TSLG 358 (428)
Q Consensus 306 N-~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~L------------------------t~l~ 358 (428)
| .+..++ .|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+ .+++
T Consensus 159 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred CccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence 9 477764 488899999999999999887788887776666666665554 3321
Q ss_pred ---------------------------------CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCC
Q 014262 359 ---------------------------------SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKIST 399 (428)
Q Consensus 359 ---------------------------------~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~ 399 (428)
.+..+++|+.|+|++|+|+.++ |..+++|++|+|++|.+..
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 1245789999999999999986 5789999999999999886
No 31
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=5.3e-22 Score=198.98 Aligned_cols=171 Identities=23% Similarity=0.288 Sum_probs=153.4
Q ss_pred ceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccC-CCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCC
Q 014262 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLN-LQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFN 328 (428)
Q Consensus 252 ~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~-~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N 328 (428)
+.++|.++++..||..+ ...++.|+|++|+|.++.+..|. .+++|++|+|++|+|..++ .|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 58999999999999987 56799999999999999998887 9999999999999999986 3899999999999999
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---c---CCCCCccEEEccCCCCCCC
Q 014262 329 DFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---M---ASQPRLQVLAASKNKISTL 400 (428)
Q Consensus 329 ~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l---~~L~~L~~L~Ls~N~Lt~l 400 (428)
+|..+.+..|.++.+|++|+|++|.|..+. .|..+++|+.|+|++|.|..++ | ..+++|++|+|++|+|+.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 999988888999999999999999999883 6899999999999999999985 3 5689999999999999998
Q ss_pred C--CCCCCCC--CcEEEccCCCC-CCccc
Q 014262 401 K--GFPHLPL--LEVSILCIARI-CIAHL 424 (428)
Q Consensus 401 p--~l~~L~~--L~~L~Ls~N~I-~~~~l 424 (428)
+ .|..++. |+.|+|.+|+| |+|++
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 7 4677776 48899999998 77764
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6.1e-21 Score=187.83 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=166.4
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceec-ccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN 306 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~L-P~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N 306 (428)
..+.+.++.+..+....|..+.+|++|++.+|.+..+ |..+..+.+|++|+|++|.|..++...+ ++|++|+|++|
T Consensus 55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n 131 (330)
T 1xku_A 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHEN 131 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSS
T ss_pred eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCC
Confidence 4478888888888888899999999999999999977 6677788999999999999997765433 78999999999
Q ss_pred CCCCCcc--ccCCCcccEEEccCCCCCC--CCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCcc---
Q 014262 307 MLSTLEG--IEILTRVKVLDLSFNDFKG--PGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI--- 379 (428)
Q Consensus 307 ~Ls~lp~--l~~L~~L~~LdLs~N~L~~--~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l--- 379 (428)
.|..++. |..+++|++|+|++|.+.. ..+..|..+++|++|+|.+|.|..++... .++|+.|+|++|.|.++
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTG
T ss_pred cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHH
Confidence 9998863 8889999999999999964 66778899999999999999999986422 28999999999999988
Q ss_pred ccCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCCCCccc
Q 014262 380 AMASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARICIAHL 424 (428)
Q Consensus 380 ~l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I~~~~l 424 (428)
.+..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|..++.
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence 3888999999999999999875 58899999999999999986653
No 33
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.86 E-value=1.4e-21 Score=209.68 Aligned_cols=176 Identities=25% Similarity=0.323 Sum_probs=160.2
Q ss_pred CCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEE
Q 014262 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD 324 (428)
Q Consensus 245 fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~Ld 324 (428)
+..+.+|+.|+|.+|.+..++. +..+.+|+.|+|++|.|.++.+ |..|++|++|+|++|.|..++.+..|++|++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 4456788999999999999874 5679999999999999999877 889999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCcc-ccCCCCCccEEEccCCCCCCCCCC
Q 014262 325 LSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI-AMASQPRLQVLAASKNKISTLKGF 403 (428)
Q Consensus 325 Ls~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l-~l~~L~~L~~L~Ls~N~Lt~lp~l 403 (428)
|++|.|.++ ..|..|++|+.|+|++|.|..++.+..+++|+.|+|++|.|.++ ++..+++|+.|+|++|.|.+++.|
T Consensus 116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l 193 (605)
T 1m9s_A 116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRAL 193 (605)
T ss_dssp CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGG
T ss_pred ecCCCCCCC--ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHH
Confidence 999999974 46889999999999999999998899999999999999999988 689999999999999999999999
Q ss_pred CCCCCCcEEEccCCCCCCcccc
Q 014262 404 PHLPLLEVSILCIARICIAHLL 425 (428)
Q Consensus 404 ~~L~~L~~L~Ls~N~I~~~~l~ 425 (428)
..|++|+.|+|.+|+|...++.
T Consensus 194 ~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp TTCTTCSEEECCSEEEECCCCC
T ss_pred ccCCCCCEEEccCCcCcCCccc
Confidence 9999999999999998766543
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.7e-20 Score=194.44 Aligned_cols=181 Identities=17% Similarity=0.155 Sum_probs=130.6
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.++.+..+ .|..+.+|++|++.+|.+..++ +..+.+|++|+|++|.|.++. |..+++|++|+|++|.|+
T Consensus 69 L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 69 LICTSNNITTL---DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp EECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCS
T ss_pred EEccCCcCCeE---ccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccc
Confidence 45555555444 3667777777777777777764 456777777777777777752 677777777777777777
Q ss_pred CCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccccCCCCCccE
Q 014262 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQV 389 (428)
Q Consensus 310 ~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L~~ 389 (428)
+++ +..+++|++|++++|.+.+.+ .+..+++|++|+|++|.|++++ +..+++|+.|++++|.|+++++..+++|++
T Consensus 141 ~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~ 216 (457)
T 3bz5_A 141 EID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTF 216 (457)
T ss_dssp CCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSE
T ss_pred eec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeeccccCCCCCE
Confidence 764 667777777777777544333 4667777888888888887776 777777888888888877777777788888
Q ss_pred EEccCCCCCCCCCCCCCCCCcEEEccCCCCCCcc
Q 014262 390 LAASKNKISTLKGFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 390 L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
|+|++|+|+++| +..+++|++|+|++|+|...+
T Consensus 217 L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 217 LDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC
T ss_pred EECcCCcccccC-ccccCCCCEEEeeCCcCCCcC
Confidence 888888887776 777777888888887776554
No 35
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=8.5e-22 Score=193.70 Aligned_cols=190 Identities=19% Similarity=0.178 Sum_probs=141.8
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCcc----------------ccC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIAS----------------GLN 293 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~----------------~l~ 293 (428)
+.+.++.+..+....|..+.+|++|++.+|.+..++. +..+.+|++|+|++|.|.++... ...
T Consensus 39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~ 117 (317)
T 3o53_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117 (317)
T ss_dssp EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEEC
T ss_pred EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCcc
Confidence 4455555544444445555566666666666554443 33455555555555555443210 022
Q ss_pred CCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCCCCCCCC-CCCCCCcEEEccCCcCCCCCCCCCCCCCCEEE
Q 014262 294 LQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPL-ENCKALQQLYLAGNQITSLGSLPELPNLEFLS 370 (428)
Q Consensus 294 ~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l-~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~ 370 (428)
.+++|++|+|++|.|..++ .+..+++|++|+|++|.|.+..+..+ ..+++|++|+|++|.|+.++.+..+++|++|+
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~ 197 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD 197 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEE
Confidence 3567888899999888875 47788999999999999998766666 47899999999999999987777799999999
Q ss_pred cCCCcCCccc--cCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCC
Q 014262 371 VAQNKLKSIA--MASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 371 Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~ 420 (428)
|++|.|.+++ +..+++|++|+|++|.|+.++ .+..+++|++|+|++|+|.
T Consensus 198 Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 9999999884 778899999999999999987 6888999999999999986
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.1e-21 Score=192.53 Aligned_cols=194 Identities=13% Similarity=0.008 Sum_probs=166.2
Q ss_pred CcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccC---------CCCCCc
Q 014262 229 GLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLN---------LQPNLE 299 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~---------~l~~L~ 299 (428)
.|.+.++.+..+. ..|..+.+|++|++.+|.+..+|..+..+.+|++|+|++|.+.+..+..+. ++++|+
T Consensus 108 ~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~ 186 (328)
T 4fcg_A 108 HMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186 (328)
T ss_dssp EEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCC
T ss_pred EEECCCCCccchh-HHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCC
Confidence 3566777766443 467888999999999999999999999999999999999888877776655 499999
Q ss_pred EEEccCCCCCCCcc-ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcC
Q 014262 300 FVYLRDNMLSTLEG-IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKL 376 (428)
Q Consensus 300 ~L~Ls~N~Ls~lp~-l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L 376 (428)
+|+|++|.|+.+|. +..+++|++|+|++|.|.+ +|..|..+++|++|+|++|.+.+. ..+..+++|++|+|++|.+
T Consensus 187 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp EEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred EEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 99999999999874 8999999999999999997 566799999999999999988775 3689999999999999877
Q ss_pred Ccc-c--cCCCCCccEEEccCCCCCC-CC-CCCCCCCCcEEEccCCCCCCccc
Q 014262 377 KSI-A--MASQPRLQVLAASKNKIST-LK-GFPHLPLLEVSILCIARICIAHL 424 (428)
Q Consensus 377 ~~l-~--l~~L~~L~~L~Ls~N~Lt~-lp-~l~~L~~L~~L~Ls~N~I~~~~l 424 (428)
.+. + +..+++|++|+|++|.+.+ +| .|.++++|+.+++..|.+..++.
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC---
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhh
Confidence 665 3 7889999999999988665 66 79999999999999998876654
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.6e-22 Score=198.92 Aligned_cols=194 Identities=20% Similarity=0.167 Sum_probs=170.9
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCce-ecccccccCCCccEEEecCCCcCccCccccCCCC-CCcEEEccCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQP-NLEFVYLRDNM 307 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~-~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~-~L~~L~Ls~N~ 307 (428)
+.+.++.+...-...|..+.+|++|++.+|.+. .+|..+..+.+|++|+|.+|.|.+..+..|..+. +|++|+|++|.
T Consensus 106 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred EECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 456666666555567888999999999999999 7888888999999999999999988888899998 99999999999
Q ss_pred CCC-Cc-cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC-CCCCCCCCCCEEEcCCCcCCcc-c--c
Q 014262 308 LST-LE-GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL-GSLPELPNLEFLSVAQNKLKSI-A--M 381 (428)
Q Consensus 308 Ls~-lp-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l-~~l~~L~~L~~L~Ls~N~L~~l-~--l 381 (428)
|.+ ++ .+..+. |++|+|++|.|.+..+..|..+++|++|+|++|.|... +.+..+++|++|+|++|.|.+. + +
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH
Confidence 985 34 477776 99999999999998999999999999999999999976 5788899999999999999854 3 8
Q ss_pred CCCCCccEEEccCCCCCC-CCCCCCCCCCcEEEccCCC-CCCccc
Q 014262 382 ASQPRLQVLAASKNKIST-LKGFPHLPLLEVSILCIAR-ICIAHL 424 (428)
Q Consensus 382 ~~L~~L~~L~Ls~N~Lt~-lp~l~~L~~L~~L~Ls~N~-I~~~~l 424 (428)
..+++|++|+|++|+|++ +|....+++|+.|+|.+|+ +|..++
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCC
Confidence 889999999999999995 7888899999999999998 666543
No 38
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=192.21 Aligned_cols=192 Identities=14% Similarity=0.066 Sum_probs=160.0
Q ss_pred CcccCCCcccccCCCCC--CCCCCCceeeeCCCCceec-c----cccccCCCccEEEecCCCcCccCccccCCCCCCcEE
Q 014262 229 GLRNGSLSSSLDRSSNL--SGQRRAGTPQSKDSRFIVL-P----QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFV 301 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~f--s~l~~L~~L~L~~n~L~~L-P----~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L 301 (428)
.+.+.++.+.......| ..+.+|++|++.+|.+... + ..++.+.+|++|+|++|.|.++.+..|..+++|++|
T Consensus 95 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 174 (310)
T 4glp_A 95 ELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSL 174 (310)
T ss_dssp EEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEE
T ss_pred EEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEE
Confidence 35666777666666666 7888999999999998852 2 233468899999999999999999899999999999
Q ss_pred EccCCCCCC---Cc---cccCCCcccEEEccCCCCCCCCCC----CCCCCCCCcEEEccCCcCCCC-C-CCCCC---CCC
Q 014262 302 YLRDNMLST---LE---GIEILTRVKVLDLSFNDFKGPGFE----PLENCKALQQLYLAGNQITSL-G-SLPEL---PNL 366 (428)
Q Consensus 302 ~Ls~N~Ls~---lp---~l~~L~~L~~LdLs~N~L~~~~p~----~l~~L~~L~~L~Ls~N~Lt~l-~-~l~~L---~~L 366 (428)
+|++|+|.. ++ .+..+++|++|+|++|.|.. ++. .+..+++|++|+|++|.|.++ + .+..+ ++|
T Consensus 175 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L 253 (310)
T 4glp_A 175 DLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSAL 253 (310)
T ss_dssp ECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTC
T ss_pred ECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcC
Confidence 999999875 32 24689999999999999975 222 256789999999999999987 3 45554 799
Q ss_pred CEEEcCCCcCCccccCCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCC
Q 014262 367 EFLSVAQNKLKSIAMASQPRLQVLAASKNKISTLKGFPHLPLLEVSILCIARICI 421 (428)
Q Consensus 367 ~~L~Ls~N~L~~l~l~~L~~L~~L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N~I~~ 421 (428)
++|+|++|+|+.++..-+++|++|+|++|+|++++.+..+++|++|+|++|+|.+
T Consensus 254 ~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 254 NSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 9999999999998755568999999999999999888999999999999999975
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=7.3e-21 Score=194.49 Aligned_cols=108 Identities=22% Similarity=0.309 Sum_probs=59.3
Q ss_pred CCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCcc---ccCCCCCccEE
Q 014262 316 ILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSI---AMASQPRLQVL 390 (428)
Q Consensus 316 ~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L 390 (428)
.+++|++|+|++|.|.+..+..|.++++|++|+|++|.|.++. .|..+++|++|+|++|.|.++ .+..+++|++|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 3444455555555554444445555555555555555554442 345555555556655555555 14555666666
Q ss_pred EccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCcc
Q 014262 391 AASKNKISTLK--GFPHLPLLEVSILCIARI-CIAH 423 (428)
Q Consensus 391 ~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~ 423 (428)
+|++|+|+.++ .|..+++|++|+|++|+| +.|+
T Consensus 377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 66666666654 255666666666666665 3443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=4.7e-21 Score=204.42 Aligned_cols=189 Identities=18% Similarity=0.222 Sum_probs=112.9
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceeccccc-ccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~-~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
|.+.++.+..+....|.++.+|++|++.+|.+..+|..+ ..+.+|++|+|++|.|.++.+..|..+++|++|+|++|.|
T Consensus 104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 566666666666666777777777777777777777654 3567777777777777777776677777777777777766
Q ss_pred CCCc-------------------------------------------------------------cccCCCcccEEEccC
Q 014262 309 STLE-------------------------------------------------------------GIEILTRVKVLDLSF 327 (428)
Q Consensus 309 s~lp-------------------------------------------------------------~l~~L~~L~~LdLs~ 327 (428)
..++ .+..+++|++|+|++
T Consensus 184 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCC
Confidence 5432 123344455555555
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCccc--cCCCCCccEEEccCCCCCCCCCCC
Q 014262 328 NDFKGPGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSIA--MASQPRLQVLAASKNKISTLKGFP 404 (428)
Q Consensus 328 N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp~l~ 404 (428)
|.|.+..|..|..+++|++|+|++|.|.+++ .+..+++|+.|+|++|.|..++ +..+++|++|+|++|.|..++ +.
T Consensus 264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~-~~ 342 (597)
T 3oja_B 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LS 342 (597)
T ss_dssp SCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC-CC
T ss_pred CccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC-hh
Confidence 5555444455555555555555555555543 2334555555555555555542 344555555555555555543 44
Q ss_pred CCCCCcEEEccCCCC
Q 014262 405 HLPLLEVSILCIARI 419 (428)
Q Consensus 405 ~L~~L~~L~Ls~N~I 419 (428)
.++.|++|+|.+|+|
T Consensus 343 ~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 343 THHTLKNLTLSHNDW 357 (597)
T ss_dssp TTCCCSEEECCSSCE
T ss_pred hcCCCCEEEeeCCCC
Confidence 555666666666665
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=8.1e-21 Score=202.56 Aligned_cols=193 Identities=20% Similarity=0.161 Sum_probs=99.2
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceeccccc-ccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~-~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
|.+.++.+..+....|..+.+|++|++.+|.+..++... ..+.+|++|+|.+|.|.++++..|..+++|++|+|++|.|
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 445555555555455555555555555555555554432 3455555555555555555555555555555555555555
Q ss_pred CCCc--cccCCCcccEEEccCCCCCCCCCCCCCCC-------------------------------------CCCcEEEc
Q 014262 309 STLE--GIEILTRVKVLDLSFNDFKGPGFEPLENC-------------------------------------KALQQLYL 349 (428)
Q Consensus 309 s~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L-------------------------------------~~L~~L~L 349 (428)
..++ .|..+++|++|+|++|.|.+.....+..+ .+|+.|+|
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L 239 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL 239 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEEC
T ss_pred CCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEEC
Confidence 5543 25555555555555555544221111111 11222222
Q ss_pred cCCcCCCCCCCCCCCCCCEEEcCCCcCCcc---ccCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCCCc
Q 014262 350 AGNQITSLGSLPELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 350 s~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
++|.|.+++.+..+++|+.|+|++|.|.++ .|..+++|+.|+|++|.|..++ .+..+++|++|+|++|.|..+
T Consensus 240 ~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i 316 (597)
T 3oja_B 240 QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 316 (597)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc
Confidence 222222323344455666666666666655 2555666666666666666654 344456666666666665544
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=5.8e-21 Score=183.34 Aligned_cols=177 Identities=19% Similarity=0.142 Sum_probs=154.7
Q ss_pred CCCceeeeCCCCceeccc-ccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEc
Q 014262 249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDL 325 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~-~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdL 325 (428)
..+++|++.+|++..++. .+..+.+|++|+|++|.|.++.+..|..+++|++|+|++|.|..++ .|..+++|++|+|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468999999999998887 5567899999999999999999888999999999999999999885 4889999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC--C-CCCCCCCCCEEEcCCCcCCccc---cCCCCCcc----EEEccCC
Q 014262 326 SFNDFKGPGFEPLENCKALQQLYLAGNQITSL--G-SLPELPNLEFLSVAQNKLKSIA---MASQPRLQ----VLAASKN 395 (428)
Q Consensus 326 s~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~-~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~----~L~Ls~N 395 (428)
.+|.+.+..+..|..+++|++|+|++|.|..+ + .+..+++|++|+|++|+|++++ +..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999997777899999999999999999984 3 6888999999999999999874 44445555 8999999
Q ss_pred CCCCCC-CCCCCCCCcEEEccCCCCCCcccc
Q 014262 396 KISTLK-GFPHLPLLEVSILCIARICIAHLL 425 (428)
Q Consensus 396 ~Lt~lp-~l~~L~~L~~L~Ls~N~I~~~~l~ 425 (428)
.|..++ .+....+|++|+|++|.|...+..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred cccccCccccCCCcccEEECCCCceeecCHh
Confidence 999976 444555899999999999877643
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.3e-21 Score=202.47 Aligned_cols=190 Identities=19% Similarity=0.178 Sum_probs=142.9
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCcc----------------ccC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIAS----------------GLN 293 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~----------------~l~ 293 (428)
|.+.++.+..+....|..+.+|++|++.+|.+..++. +..+.+|++|+|++|.|.++.+. ...
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~ 117 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc
Confidence 4555555555544555556666666666666654443 33455555555555555443211 012
Q ss_pred CCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCCCCCCCCC-CCCCCcEEEccCCcCCCCCCCCCCCCCCEEE
Q 014262 294 LQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPLE-NCKALQQLYLAGNQITSLGSLPELPNLEFLS 370 (428)
Q Consensus 294 ~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~-~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~ 370 (428)
.+++|++|+|.+|.|..++ .|..+++|++|+|++|.|.+..+..|. .+++|++|+|++|.|.+++.+..+++|+.|+
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 197 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD 197 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEE
Confidence 3578888889998888874 477889999999999999987777776 7899999999999999987777899999999
Q ss_pred cCCCcCCccc--cCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCC
Q 014262 371 VAQNKLKSIA--MASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 371 Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~ 420 (428)
|++|.|.+++ +..+++|+.|+|++|.|..+| .+..+++|+.|+|.+|+|.
T Consensus 198 Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 9999999884 778899999999999999987 6888999999999999986
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.2e-20 Score=186.15 Aligned_cols=190 Identities=21% Similarity=0.195 Sum_probs=162.0
Q ss_pred CcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 229 GLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
.+.+.++.+..+....|.++.+|++|++.+|.+..+|..++ ..|++|+|.+|.|.++.+..|..+++|++|+|.+|.+
T Consensus 82 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp EEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred EEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 46777888887777789999999999999999999988774 7899999999999998888889999999999999988
Q ss_pred CC--C-c-cccC--------------------CCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCC
Q 014262 309 ST--L-E-GIEI--------------------LTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPE 362 (428)
Q Consensus 309 s~--l-p-~l~~--------------------L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~ 362 (428)
.. + + .+.. .++|++|+|++|.|.+..+..|..+++|++|+|++|.|.+++ .+..
T Consensus 160 ~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp BGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred ccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 63 1 1 1222 257888888888888887889999999999999999999985 5889
Q ss_pred CCCCCEEEcCCCcCCccc--cCCCCCccEEEccCCCCCCCC--CCCC------CCCCcEEEccCCCCC
Q 014262 363 LPNLEFLSVAQNKLKSIA--MASQPRLQVLAASKNKISTLK--GFPH------LPLLEVSILCIARIC 420 (428)
Q Consensus 363 L~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp--~l~~------L~~L~~L~Ls~N~I~ 420 (428)
+++|+.|+|++|.|..++ +..+++|++|+|++|.|+.++ .|.. +..|+.|+|.+|++.
T Consensus 240 l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 999999999999999985 788999999999999999976 3443 467999999999986
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=1.4e-20 Score=185.96 Aligned_cols=186 Identities=19% Similarity=0.181 Sum_probs=114.5
Q ss_pred ccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC-CCC
Q 014262 231 RNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN-MLS 309 (428)
Q Consensus 231 ~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N-~Ls 309 (428)
.+.++.+..+.. |..+.+|++|++.+|.+..++ .+..+.+|++|+|.+|.|.++.+ +..+++|++|+|.+| .+.
T Consensus 72 ~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~ 146 (347)
T 4fmz_A 72 NLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS 146 (347)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCC
T ss_pred EccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcc
Confidence 344444433332 455555555555555555543 23345555555555555555443 555555555555555 333
Q ss_pred CCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccc-cCCCCCcc
Q 014262 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQ 388 (428)
Q Consensus 310 ~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~-l~~L~~L~ 388 (428)
.++.+..+++|++|++.+|.+.+..+ +..+++|++|+|++|.+..++.+..+++|+.|++.+|.+.+++ +..+++|+
T Consensus 147 ~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~ 224 (347)
T 4fmz_A 147 DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLN 224 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCC
T ss_pred cccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCC
Confidence 34445555566666666665554322 5566666666666666666655666667777777777766663 67778888
Q ss_pred EEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCcc
Q 014262 389 VLAASKNKISTLKGFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 389 ~L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
+|+|++|.|+.++.+..+++|++|+|.+|.|..++
T Consensus 225 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 259 (347)
T 4fmz_A 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN 259 (347)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred EEEccCCccCCCcchhcCCCCCEEECCCCccCCCh
Confidence 88888888888777888888888888888876654
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.4e-20 Score=192.48 Aligned_cols=126 Identities=18% Similarity=0.092 Sum_probs=63.1
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCce-ecc-cccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFI-VLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM 307 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~-~LP-~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~ 307 (428)
+.+.++.|..+....|.++.+|++|++.+|.+. .++ ..+..+.+|++|+|++|.|.++.+..|.++++|++|+|++|.
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC
Confidence 455555555554455555555555555555553 332 223345555555555555555555555555555555555555
Q ss_pred CCCC--cc--ccCCCcccEEEccCCCCCCCCCCC-CCCCCCCcEEEccCCcCC
Q 014262 308 LSTL--EG--IEILTRVKVLDLSFNDFKGPGFEP-LENCKALQQLYLAGNQIT 355 (428)
Q Consensus 308 Ls~l--p~--l~~L~~L~~LdLs~N~L~~~~p~~-l~~L~~L~~L~Ls~N~Lt 355 (428)
|.+. .. |..+++|++|+|++|.|.+..|.. |.++++|++|+|++|.|.
T Consensus 115 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 5441 11 444555555555555555443433 444444445544444443
No 47
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.85 E-value=2.1e-21 Score=186.77 Aligned_cols=170 Identities=25% Similarity=0.290 Sum_probs=122.6
Q ss_pred CCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEEccC
Q 014262 248 QRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSF 327 (428)
Q Consensus 248 l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~ 327 (428)
+.++..+++.++.+..++ .+..+.+|++|+|.+|.|..+. .|..+++|++|+|++|+|..++.+..+++|++|+|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence 344556667777777666 3445677777777777777765 3677777777777777777776677777777777777
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccc-cCCCCCccEEEccCCCCCCCCCCCCC
Q 014262 328 NDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASKNKISTLKGFPHL 406 (428)
Q Consensus 328 N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~-l~~L~~L~~L~Ls~N~Lt~lp~l~~L 406 (428)
|+|.+. +. +.. .+|++|+|++|.|.+++.+..+++|+.|+|++|+|++++ +..+++|++|+|++|.|+++..+..+
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l 171 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRL 171 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTC
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccC
Confidence 777763 22 222 777777777777777777777777778888777777773 66777777788888777777777777
Q ss_pred CCCcEEEccCCCCCCcc
Q 014262 407 PLLEVSILCIARICIAH 423 (428)
Q Consensus 407 ~~L~~L~Ls~N~I~~~~ 423 (428)
++|++|+|.+|+|...+
T Consensus 172 ~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCCCEEEEEEEEEECCC
T ss_pred CCCCEEeCCCCcccCCc
Confidence 77778887777765543
No 48
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.7e-21 Score=180.37 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=154.9
Q ss_pred CCCceeeeCCCCceecccc-cccCCCccEEEecCCC-cCccCccccCCCCCCcEEEccC-CCCCCCc--cccCCCcccEE
Q 014262 249 RRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHR-VRSLIASGLNLQPNLEFVYLRD-NMLSTLE--GIEILTRVKVL 323 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~~-~~~l~~L~~LdLs~N~-i~~l~~~~l~~l~~L~~L~Ls~-N~Ls~lp--~l~~L~~L~~L 323 (428)
..+++|++.+|++..++.. +..+.+|++|+|.+|. +..+.+..|.++++|++|+|.+ |.|+.++ .|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3789999999999999884 5578999999999997 9999988899999999999999 9999986 48899999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCc---EEEccCC-cCCCCC--CCCCCCCCC-EEEcCCCcCCcccc--CCCCCccEEEccC
Q 014262 324 DLSFNDFKGPGFEPLENCKALQ---QLYLAGN-QITSLG--SLPELPNLE-FLSVAQNKLKSIAM--ASQPRLQVLAASK 394 (428)
Q Consensus 324 dLs~N~L~~~~p~~l~~L~~L~---~L~Ls~N-~Lt~l~--~l~~L~~L~-~L~Ls~N~L~~l~l--~~L~~L~~L~Ls~ 394 (428)
+|++|.|.+ +|. |..+.+|+ +|+|++| .|..++ .|..+++|+ .|+|++|.|+.++. ....+|+.|+|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 999999998 555 88888888 9999999 999985 489999999 99999999998852 2337899999999
Q ss_pred CC-CCCCC--CCCCC-CCCcEEEccCCCCCCcccc
Q 014262 395 NK-ISTLK--GFPHL-PLLEVSILCIARICIAHLL 425 (428)
Q Consensus 395 N~-Lt~lp--~l~~L-~~L~~L~Ls~N~I~~~~l~ 425 (428)
|+ |+.++ .|..+ ++|++|+|++|+|..++..
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 95 99875 58888 9999999999999877644
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=1.1e-20 Score=186.62 Aligned_cols=104 Identities=23% Similarity=0.311 Sum_probs=44.4
Q ss_pred CCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccc-cCCCCCccEEEccC
Q 014262 316 ILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQVLAASK 394 (428)
Q Consensus 316 ~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~-l~~L~~L~~L~Ls~ 394 (428)
.+++|++|+|++|.+.+..+ +..+++|++|+|++|.|..++.+..+++|++|+|++|.|.+++ +..+++|++|+|++
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNN 296 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcC
Confidence 33344444444444333211 3344444444444444444433444444444444444444442 34444444444444
Q ss_pred CCCCCCC--CCCCCCCCcEEEccCCCCCC
Q 014262 395 NKISTLK--GFPHLPLLEVSILCIARICI 421 (428)
Q Consensus 395 N~Lt~lp--~l~~L~~L~~L~Ls~N~I~~ 421 (428)
|.|.++. .|..+++|++|+|++|+|..
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CcCCCcChhHhhccccCCEEEccCCcccc
Confidence 4444322 24444445555555554433
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=2.6e-20 Score=197.35 Aligned_cols=195 Identities=14% Similarity=0.091 Sum_probs=145.5
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceec-ccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN 306 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~L-P~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N 306 (428)
..+.+.++.|..+....|.++.+|++|++.+|.+..+ |..+..+.+|++|+|++|.|.++.+..|.++++|++|+|.+|
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 5578888888888888899999999999999988866 455667889999999999999888888888999999999999
Q ss_pred CCCCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCC--EEEcCC-------
Q 014262 307 MLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLE--FLSVAQ------- 373 (428)
Q Consensus 307 ~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~--~L~Ls~------- 373 (428)
.|..++ .|..+++|++|+|++|.|.+.....+..+++|++|+|++|.|..+. .|..+.+|+ .|++++
T Consensus 116 ~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccC
Confidence 988873 4788888888888888888755445555888888888888777652 233444444 344444
Q ss_pred --------------------------------------------------------------------CcCCccc---cC
Q 014262 374 --------------------------------------------------------------------NKLKSIA---MA 382 (428)
Q Consensus 374 --------------------------------------------------------------------N~L~~l~---l~ 382 (428)
|.+.+++ |.
T Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~ 275 (606)
T 3t6q_A 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275 (606)
T ss_dssp TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT
T ss_pred hhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhc
Confidence 4444432 55
Q ss_pred CCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCCCc
Q 014262 383 SQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 383 ~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
.+++|++|+|++|.|+.+| .+..+++|++|+|.+|.|...
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC
Confidence 5667777777777777765 567777777777777776543
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=7.3e-21 Score=196.32 Aligned_cols=195 Identities=18% Similarity=0.202 Sum_probs=140.3
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceeccc-ccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~-~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
|.+.++.+..+....|.++.+|+.|++.+|.+..++. .+..+.+|++|+|.+|.|.++.+..|..+++|+.|+|.+|.|
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 5666666666666677777777777777777776543 444667777777777777777766677777777777777776
Q ss_pred CCCc--cccCCC------------------------cccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CC
Q 014262 309 STLE--GIEILT------------------------RVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SL 360 (428)
Q Consensus 309 s~lp--~l~~L~------------------------~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l 360 (428)
..++ .|..++ +|++|+|++|.|..+.+..|..+++|++|+|++|.|..++ .|
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 6653 244444 4555555556666544455677788888888888887774 47
Q ss_pred CCCCCCCEEEcCCCcCCcc---ccCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCccc
Q 014262 361 PELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 361 ~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
..+++|+.|+|++|.|.++ .|..+++|++|+|++|.|+.++ .|..+++|++|+|.+|+| |+|++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 7888888888888888877 3777888888888888888876 477888888888888887 55553
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=5.3e-20 Score=190.82 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=157.2
Q ss_pred CcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 229 GLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
.+.+.++.+..+. .|..+.+|++|++.+|.+..++ +..+.+|++|+|++|.|.++. |..+++|++|+|++|+|
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCC
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcC
Confidence 3566666666653 5778889999999999999886 567889999999999999873 88899999999999999
Q ss_pred CCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCc-CCCCCCCCCCCCCCEEEcCCCcCCccccCCCCCc
Q 014262 309 STLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQ-ITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRL 387 (428)
Q Consensus 309 s~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~-Lt~l~~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L 387 (428)
+.++ +..+++|++|+|++|.|.++ .+..+++|++|+|++|. +..+ .+..+++|+.|+|++|+|+++++..+++|
T Consensus 119 ~~l~-~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L 193 (457)
T 3bz5_A 119 TKLD-VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELDVSQNKLL 193 (457)
T ss_dssp SCCC-CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCCCTTCTTC
T ss_pred Ceec-CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceeccccCCCC
Confidence 9886 88899999999999999884 37889999999999994 4444 68889999999999999999999999999
Q ss_pred cEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCcc
Q 014262 388 QVLAASKNKISTLKGFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 388 ~~L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
+.|++++|.|+.+ .+..+++|++|+|++|+|..++
T Consensus 194 ~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 194 NRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp CEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC
T ss_pred CEEECcCCcCCee-ccccCCCCCEEECcCCcccccC
Confidence 9999999999998 4889999999999999998766
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=2.7e-21 Score=204.99 Aligned_cols=181 Identities=19% Similarity=0.186 Sum_probs=134.2
Q ss_pred CCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCc-cccCCCCCCcEEEccCCCCCCC-c-cccCCCcc
Q 014262 244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIA-SGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRV 320 (428)
Q Consensus 244 ~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~-~~l~~l~~L~~L~Ls~N~Ls~l-p-~l~~L~~L 320 (428)
.|.++.+|++|++.+|.+..+|..+..+.+|++|+|.+|.+.++.+ ..|..+++|++|+|++|.+..+ + .+..+++|
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 4455566777777777777666666667777777777777777665 5577777777777777777764 2 36777788
Q ss_pred cEEEccCCCCCC-CCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCcc---ccCCCCCccEEEccC
Q 014262 321 KVLDLSFNDFKG-PGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASK 394 (428)
Q Consensus 321 ~~LdLs~N~L~~-~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L~Ls~ 394 (428)
++|+|++|.+.+ .+|..|..+++|++|+|++|.|.++. .|..+++|+.|+|++|+|.++ .+..+++|++|+|++
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 888888887776 36777788888888888888887763 577788888888888888877 277778888888888
Q ss_pred CCCCCCC-CCCCCC-CCcEEEccCCCC-CCccc
Q 014262 395 NKISTLK-GFPHLP-LLEVSILCIARI-CIAHL 424 (428)
Q Consensus 395 N~Lt~lp-~l~~L~-~L~~L~Ls~N~I-~~~~l 424 (428)
|+|+.+| .+..++ +|++|+|.+|+| |+|++
T Consensus 531 N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 531 NRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 8888876 567776 588888888887 55654
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=3.9e-20 Score=198.86 Aligned_cols=193 Identities=21% Similarity=0.158 Sum_probs=133.7
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCce-ecc-cccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFI-VLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM 307 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~-~LP-~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~ 307 (428)
+.+.++.+..+....|..+.+|+.|++.+|.+. .++ ..+..+..|++|+|++|.+.++.+..|..+++|++|+|.+|.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 456667777777778888889999999999886 466 345577888888888888887777777777777777777776
Q ss_pred CCCC---c-cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC----------CCCCCCCCCEEEcCC
Q 014262 308 LSTL---E-GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG----------SLPELPNLEFLSVAQ 373 (428)
Q Consensus 308 Ls~l---p-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~----------~l~~L~~L~~L~Ls~ 373 (428)
+..+ + .|..+++|++|+|++|.|.++.+..|..+.+|++|+|++|.|..++ .|..+++|++|+|++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 6532 2 3666777777777777777766666777777777777777766541 256666677777777
Q ss_pred CcCCccc---cCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCCCCc
Q 014262 374 NKLKSIA---MASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 374 N~L~~l~---l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
|+|..++ |..+++|++|+|++|+|+.++ .|..+++|++|+|++|+|...
T Consensus 546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 7666664 556666677777777666665 255566666666666655443
No 55
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.2e-20 Score=173.90 Aligned_cols=162 Identities=24% Similarity=0.251 Sum_probs=111.8
Q ss_pred ceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccCCC
Q 014262 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFND 329 (428)
Q Consensus 252 ~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N~ 329 (428)
+.++|.++++..+|..+ ..+|++|+|.+|+|.++.+..|..+++|++|+|.+|+|+.++. |..+++|++|+|++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46677777777777665 4577777777777777766667777777777777777777653 5667777777777777
Q ss_pred CCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCCCCCCC
Q 014262 330 FKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKISTLKGFP 404 (428)
Q Consensus 330 L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~lp~l~ 404 (428)
|.+..+..|..+++|++|+|++|.|..++ .|..+++|++|+|++|.|.+++ +..+++|++|+|.+|.+. .
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----~ 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----C 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----C
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----c
Confidence 77666666677777777777777777764 3667777777777777777663 556677777777777554 2
Q ss_pred CCCCCcEEEccCCCCC
Q 014262 405 HLPLLEVSILCIARIC 420 (428)
Q Consensus 405 ~L~~L~~L~Ls~N~I~ 420 (428)
.++.|++|++.+|.+.
T Consensus 163 ~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHS 178 (208)
T ss_dssp CTTTTHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHhCC
Confidence 3445566666555543
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=2.5e-20 Score=192.46 Aligned_cols=169 Identities=22% Similarity=0.246 Sum_probs=73.3
Q ss_pred CCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEEc
Q 014262 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL 325 (428)
Q Consensus 246 s~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdL 325 (428)
..+.+|+.|++.+|.+..++. +..+.+|++|+|.+|.+.++. .|..+++|++|+|++|.+..++.+..+++|++|+|
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccchhhhcCCCCCEEEC
Confidence 334444444444444443333 223444444444444444431 23444444444444444444433444444444444
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCcc-ccCCCCCccEEEccCCCCCCCCCCC
Q 014262 326 SFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI-AMASQPRLQVLAASKNKISTLKGFP 404 (428)
Q Consensus 326 s~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l-~l~~L~~L~~L~Ls~N~Lt~lp~l~ 404 (428)
++|.+.+..+ +..+++|++|+|++|.+.+++.+..+++|+.|+|++|.|.++ ++..+++|+.|++.+|.|.+++.+.
T Consensus 273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 350 (466)
T 1o6v_A 273 GANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA 350 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGT
T ss_pred CCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhc
Confidence 4444443221 344444444444444444443344444444444444444443 2334444444444444444444444
Q ss_pred CCCCCcEEEccCCCC
Q 014262 405 HLPLLEVSILCIARI 419 (428)
Q Consensus 405 ~L~~L~~L~Ls~N~I 419 (428)
.+++|++|+|.+|+|
T Consensus 351 ~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 351 NLTNINWLSAGHNQI 365 (466)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCCCcc
Confidence 444444444444443
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=1.5e-20 Score=194.14 Aligned_cols=186 Identities=23% Similarity=0.221 Sum_probs=107.9
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.++.+..+.. |..+.+|++|++.+|.+..++. +..+.+|++|+|.+|.+.++.+ |..+++|++|+|++|.|.
T Consensus 73 L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 147 (466)
T 1o6v_A 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS 147 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC
T ss_pred EECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccC
Confidence 4555555555443 6666677777777777776665 5566777777777777776654 666777777777777666
Q ss_pred CCccccC---------------------CCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCE
Q 014262 310 TLEGIEI---------------------LTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEF 368 (428)
Q Consensus 310 ~lp~l~~---------------------L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~ 368 (428)
.++.+.. +++|++|+|++|.+.+. ..+..+++|++|+|.+|.+.++..+..+++|+.
T Consensus 148 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 225 (466)
T 1o6v_A 148 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDE 225 (466)
T ss_dssp CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCE
T ss_pred CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCE
Confidence 6544333 34444444444444432 124444555555555555554433444555555
Q ss_pred EEcCCCcCCcc-ccCCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCc
Q 014262 369 LSVAQNKLKSI-AMASQPRLQVLAASKNKISTLKGFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 369 L~Ls~N~L~~l-~l~~L~~L~~L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
|+|++|.+.++ .+..+++|++|+|++|.|.+++.+..+++|++|+|.+|.|...
T Consensus 226 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 280 (466)
T 1o6v_A 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 280 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC
T ss_pred EECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc
Confidence 55555555554 2455556666666666666655566666666666666665543
No 58
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=3.3e-20 Score=196.60 Aligned_cols=192 Identities=22% Similarity=0.191 Sum_probs=132.1
Q ss_pred CcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 229 GLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
.+.+.++.+..+....|..+.+|++|++.+|.+..+|..+..+.+|++|+|.+|.+.++.+..|..+++|++|+|.+|.+
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 35677777777777778888888888888888888888887888888888888888888777777777788888877776
Q ss_pred CC-Cc--cccCCCcccEEEccCCCCCCCC--CCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcCCccc-
Q 014262 309 ST-LE--GIEILTRVKVLDLSFNDFKGPG--FEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSIA- 380 (428)
Q Consensus 309 s~-lp--~l~~L~~L~~LdLs~N~L~~~~--p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L~~l~- 380 (428)
.. ++ .+..+++|++|+|++|.+.+.. +..|..+++|++|+|++|.+.++ ..|..+++|+.|+|++|.+.+..
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 63 32 2666777777777777766543 55566666666666666666555 24556666666666666665441
Q ss_pred ---cCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCCC
Q 014262 381 ---MASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 381 ---l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I~ 420 (428)
+..+++|++|+|++|.|..++ .|..+++|++|+|++|+|.
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 455566666666666665532 3555666666666666554
No 59
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.2e-19 Score=172.34 Aligned_cols=168 Identities=21% Similarity=0.195 Sum_probs=141.0
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccc-cccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~-~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
+.+.++.+..+...-. ..++.|++.+|.+..++.. +..+.+|++|+|++|.|.++.+..|..+++|++|+|++|.|
T Consensus 19 l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 19 VDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 4455555554443222 4688999999999977764 55789999999999999999888899999999999999999
Q ss_pred CCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---c
Q 014262 309 STLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---M 381 (428)
Q Consensus 309 s~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l 381 (428)
..++ .|..+++|++|+|++|.|.++.+..|..+.+|++|+|++|.|..++ .|..+++|++|+|++|.|..++ +
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 9886 3788999999999999999877777889999999999999999985 4888999999999999999884 6
Q ss_pred CCCCCccEEEccCCCCCCC
Q 014262 382 ASQPRLQVLAASKNKISTL 400 (428)
Q Consensus 382 ~~L~~L~~L~Ls~N~Lt~l 400 (428)
..+++|++|+|.+|.|...
T Consensus 176 ~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSCCBCTT
T ss_pred hCCCCCCEEEeeCCceeCC
Confidence 7888999999999998764
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=8e-21 Score=174.20 Aligned_cols=150 Identities=15% Similarity=0.217 Sum_probs=134.7
Q ss_pred cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 014262 270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYL 349 (428)
Q Consensus 270 ~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~L 349 (428)
.+.+|++|+|.+|.|..+. .+..+++|++|+|.+|.+..++.+..+++|++|+|++|.|.+..+..|..|++|++|+|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4778999999999999776 48889999999999999999888999999999999999999877889999999999999
Q ss_pred cCCcCCCC--CCCCCCCCCCEEEcCCCc-CCcc-ccCCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCC
Q 014262 350 AGNQITSL--GSLPELPNLEFLSVAQNK-LKSI-AMASQPRLQVLAASKNKISTLKGFPHLPLLEVSILCIARICI 421 (428)
Q Consensus 350 s~N~Lt~l--~~l~~L~~L~~L~Ls~N~-L~~l-~l~~L~~L~~L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N~I~~ 421 (428)
++|.|.+. ..+..+++|++|+|++|. +..+ .+..+++|++|+|++|.|++++.+..+++|++|+|.+|+|..
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 99999973 578899999999999998 8888 488899999999999999999999999999999999999864
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.6e-20 Score=198.05 Aligned_cols=169 Identities=23% Similarity=0.242 Sum_probs=119.6
Q ss_pred ceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccCCC
Q 014262 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFND 329 (428)
Q Consensus 252 ~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N~ 329 (428)
.+++|.+.+++.||..+ ...+++|||++|+|+++.+..|.++++|++|+|++|+|+.++. |.++++|++|+|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 45677777777777766 5677777787777777777777777777888887777777743 7777777778887777
Q ss_pred CCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc----cCCCCCccEEEccCCCCCCCC--
Q 014262 330 FKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA----MASQPRLQVLAASKNKISTLK-- 401 (428)
Q Consensus 330 L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~----l~~L~~L~~L~Ls~N~Lt~lp-- 401 (428)
|..+.+..|.+|.+|++|+|++|.|+.++ .|..+++|++|+|++|.|..+. +..+.+|++|+|++|+|+.++
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 77766667777777777887777777774 4677777777777777776652 556777777777777777653
Q ss_pred CCCCCC----CCcEEEccCCCCCCc
Q 014262 402 GFPHLP----LLEVSILCIARICIA 422 (428)
Q Consensus 402 ~l~~L~----~L~~L~Ls~N~I~~~ 422 (428)
.|..+. .+..+++..|.|...
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred cccchhhhhhhhhhhhcccCccccc
Confidence 233222 233566666666443
No 62
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=2.4e-20 Score=204.60 Aligned_cols=125 Identities=24% Similarity=0.167 Sum_probs=69.8
Q ss_pred ccCCCcccccCCCCCCCCCCCceeeeCCCCce-ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 231 RNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 231 ~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~-~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
.+.++.+.......|..+.+|+.|++.+|.+. .+|..+..+..|++|+|.+|.+.+..+..|..+++|++|+|++|+|.
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 34444443333344445555555555555555 45555555556666666666666555555666666666666666665
Q ss_pred CC-c-cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCC
Q 014262 310 TL-E-GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQIT 355 (428)
Q Consensus 310 ~l-p-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt 355 (428)
+. | .|..+++|++|+|++|.|.+.+|..|.++++|++|+|++|.+.
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 32 3 2555666666666666665555555556666666666555543
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=2.7e-21 Score=189.76 Aligned_cols=174 Identities=19% Similarity=0.152 Sum_probs=132.6
Q ss_pred CCCCCceeeeCCCCce-eccccc--ccCCCccEEEecCCCcCccCccccCCC-----CCCcEEEccCCCCCCCc--cccC
Q 014262 247 GQRRAGTPQSKDSRFI-VLPQVE--IKAGDDVRLDLRGHRVRSLIASGLNLQ-----PNLEFVYLRDNMLSTLE--GIEI 316 (428)
Q Consensus 247 ~l~~L~~L~L~~n~L~-~LP~~~--~~l~~L~~LdLs~N~i~~l~~~~l~~l-----~~L~~L~Ls~N~Ls~lp--~l~~ 316 (428)
++.+|++|++.+|++. .+|..+ ..+.+|++|+|++|.|.++ +..|..+ ++|++|+|++|+|..++ .|..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4678888888888887 677765 5678888888888888887 5556555 78888888888888875 4788
Q ss_pred CCcccEEEccCCCCCCC--CCCCC--CCCCCCcEEEccCCcCCCCC-----CCCCCCCCCEEEcCCCcCCccc----cCC
Q 014262 317 LTRVKVLDLSFNDFKGP--GFEPL--ENCKALQQLYLAGNQITSLG-----SLPELPNLEFLSVAQNKLKSIA----MAS 383 (428)
Q Consensus 317 L~~L~~LdLs~N~L~~~--~p~~l--~~L~~L~~L~Ls~N~Lt~l~-----~l~~L~~L~~L~Ls~N~L~~l~----l~~ 383 (428)
+++|++|+|++|++.+. .+..+ ..+++|++|+|++|.|..++ .+..+++|++|+|++|.|.+.. +..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 88888888888887653 12233 77888888888888888653 2346788888888888888742 445
Q ss_pred CCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCcc
Q 014262 384 QPRLQVLAASKNKISTLKG-FPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 384 L~~L~~L~Ls~N~Lt~lp~-l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
+++|++|+|++|.|+.+|. +. ++|++|+|++|+|...+
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCC
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCCh
Confidence 6888888888888888773 43 78888888888887664
No 64
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=6.1e-20 Score=197.36 Aligned_cols=195 Identities=19% Similarity=0.210 Sum_probs=168.3
Q ss_pred cccCCCcccc-cCCCCCCCCCCCceeeeCCCCceecccc-cccCCCccEEEecCCCcC--ccCccccCCCCCCcEEEccC
Q 014262 230 LRNGSLSSSL-DRSSNLSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVR--SLIASGLNLQPNLEFVYLRD 305 (428)
Q Consensus 230 L~L~~~si~~-l~~~~fs~l~~L~~L~L~~n~L~~LP~~-~~~l~~L~~LdLs~N~i~--~l~~~~l~~l~~L~~L~Ls~ 305 (428)
+.+.++.+.. +....|.++.+|++|++.+|.+..++.. +..++.|++|+|.+|.+. +..+..|..+++|++|+|++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 5666776653 4557889999999999999999977654 447899999999999987 45677899999999999999
Q ss_pred CCCCCCcc--ccCCCcccEEEccCCCCCCCC--------CCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCC
Q 014262 306 NMLSTLEG--IEILTRVKVLDLSFNDFKGPG--------FEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQ 373 (428)
Q Consensus 306 N~Ls~lp~--l~~L~~L~~LdLs~N~L~~~~--------p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~ 373 (428)
|+|..++. |..+++|++|+|++|.|.+.. ...|.++++|++|+|++|.|..++ .|..+++|+.|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 99999864 889999999999999998642 224789999999999999999996 589999999999999
Q ss_pred CcCCccc---cCCCCCccEEEccCCCCCCCC--CCC-CCCCCcEEEccCCCC-CCccc
Q 014262 374 NKLKSIA---MASQPRLQVLAASKNKISTLK--GFP-HLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 374 N~L~~l~---l~~L~~L~~L~Ls~N~Lt~lp--~l~-~L~~L~~L~Ls~N~I-~~~~l 424 (428)
|+|+.++ |..+++|+.|+|++|+|+.++ .|. .+++|++|+|.+|+| |+|++
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999985 678899999999999999987 355 688999999999998 77774
No 65
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=1.2e-19 Score=192.34 Aligned_cols=130 Identities=16% Similarity=0.090 Sum_probs=116.2
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceeccc-ccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN 306 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~-~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N 306 (428)
..+.+.++.+..+....|.++.+|++|++.+|.+..++. .+..+.+|++|+|++|.|.++.+..|.++++|++|+|++|
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 457899999999988899999999999999999998854 5568899999999999999998889999999999999999
Q ss_pred CCCCCc--cccCCCcccEEEccCCCCCC-CCCCCCCCCCCCcEEEccCCcCCCC
Q 014262 307 MLSTLE--GIEILTRVKVLDLSFNDFKG-PGFEPLENCKALQQLYLAGNQITSL 357 (428)
Q Consensus 307 ~Ls~lp--~l~~L~~L~~LdLs~N~L~~-~~p~~l~~L~~L~~L~Ls~N~Lt~l 357 (428)
.|..++ .|..+.+|++|+|++|.|.+ .+|..|.++++|++|+|++|.|.++
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999886 48899999999999999986 4688899999999999999988775
No 66
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.7e-20 Score=205.88 Aligned_cols=192 Identities=17% Similarity=0.162 Sum_probs=165.2
Q ss_pred CcccCCCcccccCCCCCCCCCCCceeeeCCCCce-ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC
Q 014262 229 GLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM 307 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~-~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~ 307 (428)
.+.+.++.+...-...|..+.+|++|++.+|.+. .+|..+..+..|++|+|.+|++.+..|..|..+++|++|+|++|.
T Consensus 446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 3566666666555566778899999999999998 778888889999999999999999999999999999999999999
Q ss_pred CCC-Cc-cccCCCcccEEEccCCCCCCCCCCC------------------------------------------------
Q 014262 308 LST-LE-GIEILTRVKVLDLSFNDFKGPGFEP------------------------------------------------ 337 (428)
Q Consensus 308 Ls~-lp-~l~~L~~L~~LdLs~N~L~~~~p~~------------------------------------------------ 337 (428)
|.+ +| .+..+++|++|+|++|.+.+.+|..
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 985 44 4889999999999999887655533
Q ss_pred ----------------------CCCCCCCcEEEccCCcCCCC-C-CCCCCCCCCEEEcCCCcCCcc-c--cCCCCCccEE
Q 014262 338 ----------------------LENCKALQQLYLAGNQITSL-G-SLPELPNLEFLSVAQNKLKSI-A--MASQPRLQVL 390 (428)
Q Consensus 338 ----------------------l~~L~~L~~L~Ls~N~Lt~l-~-~l~~L~~L~~L~Ls~N~L~~l-~--l~~L~~L~~L 390 (428)
|..+.+|++|+|++|.|++. | .|+.++.|+.|+|++|.|.+. | ++.+.+|+.|
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 44467899999999999865 4 689999999999999999965 4 8899999999
Q ss_pred EccCCCCCC-CC-CCCCCCCCcEEEccCCCCC
Q 014262 391 AASKNKIST-LK-GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 391 ~Ls~N~Lt~-lp-~l~~L~~L~~L~Ls~N~I~ 420 (428)
||++|+|++ +| .|..++.|++|+|++|+|.
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 999999996 56 7899999999999999874
No 67
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.5e-19 Score=169.94 Aligned_cols=148 Identities=24% Similarity=0.294 Sum_probs=128.3
Q ss_pred CCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccC
Q 014262 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSF 327 (428)
Q Consensus 250 ~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~ 327 (428)
....++|.++++..+|..+ ..+|++|+|++|.|.++.+..|..+++|++|+|++|+|..++. |..+++|++|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3567999999999999877 5899999999999999988889999999999999999998864 78899999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCC
Q 014262 328 NDFKGPGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKIST 399 (428)
Q Consensus 328 N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~ 399 (428)
|.|..+.+..|..+++|++|+|++|.|..++ .+..+++|++|+|++|+|..++ +..+++|+.|+|.+|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999877777888999999999999999885 6778888888888888888874 6677888888888888764
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=190.28 Aligned_cols=178 Identities=21% Similarity=0.210 Sum_probs=159.0
Q ss_pred CCCCCCceeeeCCCCceec---ccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc---cccCCCc
Q 014262 246 SGQRRAGTPQSKDSRFIVL---PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE---GIEILTR 319 (428)
Q Consensus 246 s~l~~L~~L~L~~n~L~~L---P~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp---~l~~L~~ 319 (428)
..+.+|+.|++.+|.+..+ +..+..+..|++|+|.+|.+.++.+. |..+++|++|+|.+|.+..++ .+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 5677899999999999866 56677899999999999999998776 899999999999999998763 4888999
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCC--CC-CCCCCCCCCEEEcCCCcCCcc---ccCCCCCccEEEcc
Q 014262 320 VKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITS--LG-SLPELPNLEFLSVAQNKLKSI---AMASQPRLQVLAAS 393 (428)
Q Consensus 320 L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~--l~-~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L~Ls 393 (428)
|++|+|++|.+.+..+..|..+++|++|+|.+|.+.+ ++ .+..+++|++|+|++|.|.++ .+..+++|++|+|+
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 9999999999999889999999999999999999973 44 789999999999999999998 37889999999999
Q ss_pred CCCCCCCC--CCCCCCCCcEEEccCCCC-CCccc
Q 014262 394 KNKISTLK--GFPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 394 ~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
+|.|++++ .|..+++|++|+|.+|+| |.|+.
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999976 488999999999999998 55553
No 69
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=1.3e-19 Score=195.07 Aligned_cols=179 Identities=15% Similarity=0.146 Sum_probs=103.3
Q ss_pred CCCCCC-CceeeeCCCCceecccccccCC--CccEEEecCCCcCccCccccC-------CCCCCcEEEccCCCCCCCcc-
Q 014262 245 LSGQRR-AGTPQSKDSRFIVLPQVEIKAG--DDVRLDLRGHRVRSLIASGLN-------LQPNLEFVYLRDNMLSTLEG- 313 (428)
Q Consensus 245 fs~l~~-L~~L~L~~n~L~~LP~~~~~l~--~L~~LdLs~N~i~~l~~~~l~-------~l~~L~~L~Ls~N~Ls~lp~- 313 (428)
|..+.+ |++|++.+|.+..+|..+..+. +|++|+|++|.|.+..+..|. .+.+|++|+|++|.|..++.
T Consensus 372 l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 451 (636)
T 4eco_A 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451 (636)
T ss_dssp SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH
Confidence 444444 5666666666555555443322 566666666666655555555 55566677777776666653
Q ss_pred -ccCCCcccEEEccCCCCCCCCCCCCCCC-------CCCcEEEccCCcCCCCC-CCC--CCCCCCEEEcCCCcCCccc--
Q 014262 314 -IEILTRVKVLDLSFNDFKGPGFEPLENC-------KALQQLYLAGNQITSLG-SLP--ELPNLEFLSVAQNKLKSIA-- 380 (428)
Q Consensus 314 -l~~L~~L~~LdLs~N~L~~~~p~~l~~L-------~~L~~L~Ls~N~Lt~l~-~l~--~L~~L~~L~Ls~N~L~~l~-- 380 (428)
+..+++|++|+|++|.|..+....+..+ ++|++|+|++|.|..++ .+. .+++|+.|+|++|.|.++|
T Consensus 452 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~ 531 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531 (636)
T ss_dssp HHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCG
T ss_pred HHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChh
Confidence 4446667777777776664322222222 26677777777766664 333 6667777777777766663
Q ss_pred cCCCCCccEEEccC------CCCCC-CC-CCCCCCCCcEEEccCCCCCCcc
Q 014262 381 MASQPRLQVLAASK------NKIST-LK-GFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 381 l~~L~~L~~L~Ls~------N~Lt~-lp-~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
+..+++|++|+|++ |++.+ +| .|..+++|++|+|++|+|..++
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip 582 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN 582 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccC
Confidence 55566666666633 33332 33 4556666666666666665444
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=6.7e-20 Score=190.90 Aligned_cols=171 Identities=22% Similarity=0.248 Sum_probs=141.1
Q ss_pred CceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc----cccCCCcccEEEcc
Q 014262 251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE----GIEILTRVKVLDLS 326 (428)
Q Consensus 251 L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp----~l~~L~~L~~LdLs 326 (428)
++.|++.+|++..++. ...+..|++|+|++|.|.+..+..|..+++|++|+|++|+|..++ .+..+++|++|+|+
T Consensus 304 L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred eeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 4444444444443321 135789999999999999988888999999999999999999764 27899999999999
Q ss_pred CCCCCCCCCC-CCCCCCCCcEEEccCCcCCCC-C-CCCCCCCCCEEEcCCCcCCccc--cCCCCCccEEEccCCCCCCCC
Q 014262 327 FNDFKGPGFE-PLENCKALQQLYLAGNQITSL-G-SLPELPNLEFLSVAQNKLKSIA--MASQPRLQVLAASKNKISTLK 401 (428)
Q Consensus 327 ~N~L~~~~p~-~l~~L~~L~~L~Ls~N~Lt~l-~-~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp 401 (428)
+|.|.+.+|. .|..+++|++|+|++|.|++. + .+. ++|+.|+|++|+|..++ +..+++|++|+|++|+|+.+|
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccC
Confidence 9999984444 588899999999999999764 2 222 78999999999999885 668999999999999999998
Q ss_pred C--CCCCCCCcEEEccCCCC-CCccc
Q 014262 402 G--FPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 402 ~--l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
. |..+++|++|+|.+|+| |+|++
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHhccCCcccEEECcCCCCcccCCc
Confidence 3 88999999999999998 56654
No 71
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.2e-19 Score=167.98 Aligned_cols=146 Identities=21% Similarity=0.267 Sum_probs=116.5
Q ss_pred ceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCC
Q 014262 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFND 329 (428)
Q Consensus 252 ~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~ 329 (428)
+.++|.++++..||..+ ...|++|+|.+|.|.++.+..|..+++|++|+|++|.|..+. .|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 57889999999998876 478899999999999888878888888999999988888872 47888888888888888
Q ss_pred CCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCC
Q 014262 330 FKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKIST 399 (428)
Q Consensus 330 L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~ 399 (428)
|..+.+..|..+++|++|+|++|.|..++ .|..+++|++|+|++|.|+.++ |..+++|++|+|.+|.|..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88766666788888888888888888773 5777777777777777777763 5566677777777776653
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=7.9e-19 Score=185.29 Aligned_cols=79 Identities=13% Similarity=-0.021 Sum_probs=53.2
Q ss_pred CcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccC-ccccCCCCCCcEEEccCCC
Q 014262 229 GLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLI-ASGLNLQPNLEFVYLRDNM 307 (428)
Q Consensus 229 ~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~-~~~l~~l~~L~~L~Ls~N~ 307 (428)
.+.+.++.+..+....|.++.+|++|++.+|.+..+|.. .+.+|++|+|++|.|.++. +..|.++++|++|+|++|.
T Consensus 80 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred EEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 356666777666666777777777777777777777766 4677777777777777654 3556666666666666665
Q ss_pred CC
Q 014262 308 LS 309 (428)
Q Consensus 308 Ls 309 (428)
|.
T Consensus 158 l~ 159 (562)
T 3a79_B 158 FR 159 (562)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 73
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.9e-19 Score=167.17 Aligned_cols=148 Identities=23% Similarity=0.362 Sum_probs=133.6
Q ss_pred cEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCC
Q 014262 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGN 352 (428)
Q Consensus 275 ~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N 352 (428)
+.+++.++.++.++.. + .++|++|+|.+|.|..++ .|..+++|++|+|++|.|.++.+..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 5789999999988654 3 268999999999999986 4889999999999999999988999999999999999999
Q ss_pred cCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCccc
Q 014262 353 QITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 353 ~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
.|+.++ .|..+++|++|+|++|.|..++ |..+++|++|+|++|.|+.++ .|..+++|++|+|.+|+| |+|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 999996 4789999999999999999983 788999999999999999986 488999999999999998 66665
Q ss_pred c
Q 014262 425 L 425 (428)
Q Consensus 425 ~ 425 (428)
.
T Consensus 171 ~ 171 (220)
T 2v9t_B 171 K 171 (220)
T ss_dssp H
T ss_pred H
Confidence 3
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=187.44 Aligned_cols=152 Identities=18% Similarity=0.118 Sum_probs=129.5
Q ss_pred CCCcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccc-cccCCCccEEEecCCCcCccCccccCCCCCCcEEEccC
Q 014262 227 SSGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRD 305 (428)
Q Consensus 227 ~s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~-~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~ 305 (428)
-..+.+.++.+..+....|.++.+|++|++.+|.+..++.. +..+.+|++|+|++|.|.++.+..|.++++|++|+|.+
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 35578999999999888999999999999999999988654 55789999999999999999988999999999999999
Q ss_pred CCCCCCcc--ccCCCcccEEEccCCCCCCC-CCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCC----CEEEcCCCcC
Q 014262 306 NMLSTLEG--IEILTRVKVLDLSFNDFKGP-GFEPLENCKALQQLYLAGNQITSLG--SLPELPNL----EFLSVAQNKL 376 (428)
Q Consensus 306 N~Ls~lp~--l~~L~~L~~LdLs~N~L~~~-~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L----~~L~Ls~N~L 376 (428)
|.|..++. |..+.+|++|+|++|.|.+. +|..|.++++|++|+|++|.|..++ .+..+.+| +.|++.+|.+
T Consensus 110 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 99999864 89999999999999999873 6889999999999999999988763 34444444 5666666655
Q ss_pred Cc
Q 014262 377 KS 378 (428)
Q Consensus 377 ~~ 378 (428)
..
T Consensus 190 ~~ 191 (570)
T 2z63_A 190 NF 191 (570)
T ss_dssp CE
T ss_pred ee
Confidence 43
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.6e-19 Score=175.91 Aligned_cols=165 Identities=19% Similarity=0.185 Sum_probs=149.2
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.++.+..+. .|..+.+|+.|++.+|.+..++. +..+.+|++|+|.+|.|.++.. |..+++|++|+|++|.|.
T Consensus 51 L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 51 IIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp EECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCC
T ss_pred EEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCC
Confidence 456666666663 47778999999999999999887 7789999999999999998754 999999999999999999
Q ss_pred CCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCcc-ccCCCCCcc
Q 014262 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI-AMASQPRLQ 388 (428)
Q Consensus 310 ~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l-~l~~L~~L~ 388 (428)
.++.+..+++|++|+|++|.|.+. ..+..+++|++|+|++|.|.+++.+..+++|++|+|++|.|.++ .+..+++|+
T Consensus 126 ~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~ 203 (291)
T 1h6t_A 126 DINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLD 203 (291)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCS
T ss_pred CChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCC
Confidence 999899999999999999999985 57899999999999999999997799999999999999999998 488999999
Q ss_pred EEEccCCCCCCCC
Q 014262 389 VLAASKNKISTLK 401 (428)
Q Consensus 389 ~L~Ls~N~Lt~lp 401 (428)
.|+|.+|.|...+
T Consensus 204 ~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 204 VLELFSQECLNKP 216 (291)
T ss_dssp EEEEEEEEEECCC
T ss_pred EEECcCCcccCCc
Confidence 9999999988754
No 76
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=7.7e-20 Score=196.78 Aligned_cols=177 Identities=17% Similarity=0.191 Sum_probs=112.6
Q ss_pred CCCCCCCCceeeeCCCCce-ecccccccCCCccEEEecCCCcCccCccccCCCCC-CcEEEccCCCCCCCcc-ccCC--C
Q 014262 244 NLSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPN-LEFVYLRDNMLSTLEG-IEIL--T 318 (428)
Q Consensus 244 ~fs~l~~L~~L~L~~n~L~-~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~-L~~L~Ls~N~Ls~lp~-l~~L--~ 318 (428)
.|..+.+|++|++.+|.+. .+| .+..+.+|++|+|++|.|..+ +..|..+++ |++|+|++|.|..+|. +..+ +
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI-PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEEC-CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccc-cHhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence 4555666666666666666 666 555566666666666666633 334666666 7777777777776654 3333 3
Q ss_pred cccEEEccCCCCCCCCCCCCC-------CCCCCcEEEccCCcCCCCCC--CCCCCCCCEEEcCCCcCCccccCCC-----
Q 014262 319 RVKVLDLSFNDFKGPGFEPLE-------NCKALQQLYLAGNQITSLGS--LPELPNLEFLSVAQNKLKSIAMASQ----- 384 (428)
Q Consensus 319 ~L~~LdLs~N~L~~~~p~~l~-------~L~~L~~L~Ls~N~Lt~l~~--l~~L~~L~~L~Ls~N~L~~l~l~~L----- 384 (428)
+|++|+|++|.|.+..|..|. .+.+|++|+|++|.|..++. +..+++|++|+|++|.|..++...+
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 677777777777776666666 66677777777777776643 4456667777777776666542221
Q ss_pred -----CCccEEEccCCCCCCCC-CCC--CCCCCcEEEccCCCCCCc
Q 014262 385 -----PRLQVLAASKNKISTLK-GFP--HLPLLEVSILCIARICIA 422 (428)
Q Consensus 385 -----~~L~~L~Ls~N~Lt~lp-~l~--~L~~L~~L~Ls~N~I~~~ 422 (428)
++|++|+|++|.|+.+| .+. .+++|++|+|++|+|..+
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i 528 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC
T ss_pred cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc
Confidence 16666777777666665 343 666667777776666554
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=2.4e-19 Score=187.53 Aligned_cols=174 Identities=21% Similarity=0.244 Sum_probs=128.9
Q ss_pred CCCceeeeCCCCceecccccc-cCCCccEEEecCCCcCccCc---cccCCCCCCcEEEccCCCCCCCcc----ccCCCcc
Q 014262 249 RRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIA---SGLNLQPNLEFVYLRDNMLSTLEG----IEILTRV 320 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~~~~-~l~~L~~LdLs~N~i~~l~~---~~l~~l~~L~~L~Ls~N~Ls~lp~----l~~L~~L 320 (428)
.+++.|++.+|.+..+|..++ .+.+|++|+|++|.|.+..+ ..+..+++|++|+|++|+|+.++. +..+++|
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 467778888888888887764 57888888888888877543 236677888888888888877642 6778888
Q ss_pred cEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCC-------------------CCCCCCCCEEEcCCCcCCccc-
Q 014262 321 KVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGS-------------------LPELPNLEFLSVAQNKLKSIA- 380 (428)
Q Consensus 321 ~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~-------------------l~~L~~L~~L~Ls~N~L~~l~- 380 (428)
++|+|++|+|.. +|..+..+++|++|+|++|.|..++. +..+++|++|+|++|+|+.++
T Consensus 390 ~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~ 468 (549)
T 2z81_A 390 TSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD 468 (549)
T ss_dssp CEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred CEEECCCCCCcc-CChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC
Confidence 888888888875 66677777777777777777765531 135677788888888777774
Q ss_pred cCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCcc
Q 014262 381 MASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAH 423 (428)
Q Consensus 381 l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~ 423 (428)
+..+++|++|+|++|+|++++ .|..+++|++|+|++|+| |.|+
T Consensus 469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 556778888888888888765 377888888888888886 5554
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=8.8e-21 Score=186.47 Aligned_cols=178 Identities=15% Similarity=0.058 Sum_probs=144.8
Q ss_pred CCCCCCCCceeeeCCCCceecc-cccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc---------
Q 014262 244 NLSGQRRAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--------- 313 (428)
Q Consensus 244 ~fs~l~~L~~L~L~~n~L~~LP-~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--------- 313 (428)
.|..+.++++|++.+|.+..++ ..+..+.+|++|+|++|.|.++.+ |..+++|++|+|++|.|+.++.
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l 106 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHA 106 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEEC
Confidence 3445668999999999999886 456688999999999999998776 8899999999999998776531
Q ss_pred ---------ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CC-CCCCCCCEEEcCCCcCCccc-
Q 014262 314 ---------IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SL-PELPNLEFLSVAQNKLKSIA- 380 (428)
Q Consensus 314 ---------l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l-~~L~~L~~L~Ls~N~L~~l~- 380 (428)
...+++|++|+|++|.|.+..+..|..+++|++|+|++|.|..+. .+ ..+++|++|+|++|.|+.++
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 123567888888888888877777888888899999998888763 33 46788999999999888884
Q ss_pred cCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCCCcc
Q 014262 381 MASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 381 l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
...+++|++|+|++|.|+.++ .|..+++|++|+|++|+|..++
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh
Confidence 556888999999999998875 6888889999999999887654
No 79
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=8.3e-20 Score=175.59 Aligned_cols=163 Identities=19% Similarity=0.171 Sum_probs=145.5
Q ss_pred ccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCC
Q 014262 231 RNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST 310 (428)
Q Consensus 231 ~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~ 310 (428)
.+.++.+..+. .+..+.+++.|++.+|++..++ .+..+.+|++|+|++|+|.++.+ |..+++|++|+|++|+|+.
T Consensus 25 ~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 25 NLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC
T ss_pred HhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC
Confidence 45555555544 4677889999999999999998 56679999999999999999877 9999999999999999999
Q ss_pred CccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCcc-ccCCCCCccE
Q 014262 311 LEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI-AMASQPRLQV 389 (428)
Q Consensus 311 lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l-~l~~L~~L~~ 389 (428)
++.+.. .+|++|+|++|.|.+. ..|..+++|++|+|++|+|++++.+..+++|++|+|++|.|.++ .+..+++|+.
T Consensus 100 l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~ 176 (263)
T 1xeu_A 100 LNGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNW 176 (263)
T ss_dssp CTTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCE
T ss_pred cCcccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCE
Confidence 987766 9999999999999984 36899999999999999999999899999999999999999998 4888999999
Q ss_pred EEccCCCCCCCC
Q 014262 390 LAASKNKISTLK 401 (428)
Q Consensus 390 L~Ls~N~Lt~lp 401 (428)
|+|++|.|...+
T Consensus 177 L~l~~N~~~~~~ 188 (263)
T 1xeu_A 177 IDLTGQKCVNEP 188 (263)
T ss_dssp EEEEEEEEECCC
T ss_pred EeCCCCcccCCc
Confidence 999999988764
No 80
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=166.37 Aligned_cols=146 Identities=20% Similarity=0.281 Sum_probs=119.8
Q ss_pred ceeeeCCCCceecccccccCCCccEEEecCCCcCccCc-cccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCC
Q 014262 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIA-SGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFN 328 (428)
Q Consensus 252 ~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~-~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N 328 (428)
+.++|.++.+..||..+ ...+++|+|++|.|.++.+ ..|..+++|++|+|++|.|+.++ .|..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 47889999999888876 5567899999999988854 45788889999999999988875 3888888999999999
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCC
Q 014262 329 DFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKIST 399 (428)
Q Consensus 329 ~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~ 399 (428)
.|.+..+..|..+++|++|+|++|.|..+ ..|..+++|++|+|++|.|++++ |..+++|+.|+|++|.|..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 98887777788888888888888888887 35778888888888888888772 6677788888888887764
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=1.5e-19 Score=165.69 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=134.7
Q ss_pred CCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCC--CccccCCCcccEE
Q 014262 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST--LEGIEILTRVKVL 323 (428)
Q Consensus 246 s~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~--lp~l~~L~~L~~L 323 (428)
..+.+++.|++.+|.+..++ .+..+.+|++|+|.+|.+..+. .|..+++|++|+|++|.|.. ...|..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44567899999999999998 5667999999999999887764 48899999999999999997 4569999999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEEccCCc-CCCCCCCCCCCCCCEEEcCCCcCCcc-ccCCCCCccEEEccCCCCCC
Q 014262 324 DLSFNDFKGPGFEPLENCKALQQLYLAGNQ-ITSLGSLPELPNLEFLSVAQNKLKSI-AMASQPRLQVLAASKNKIST 399 (428)
Q Consensus 324 dLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~-Lt~l~~l~~L~~L~~L~Ls~N~L~~l-~l~~L~~L~~L~Ls~N~Lt~ 399 (428)
+|++|.|.+..+..|..+++|++|+|++|. +..++.+..+++|+.|+|++|.|.++ .+..+++|++|++.+|+|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 999999998778889999999999999998 99998899999999999999999998 68899999999999999875
No 82
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.3e-18 Score=185.61 Aligned_cols=173 Identities=22% Similarity=0.195 Sum_probs=145.6
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.++.+..+...- ..+|++|++.+|.|..|| .+ +.+|++|+|++|.|.+++. |.. +|++|+|++|.|+
T Consensus 64 L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip-~~--l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 64 LQLNRLNLSSLPDNL---PPQITVLEITQNALISLP-EL--PASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp EECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC-CC--CTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCS
T ss_pred EEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc-cc--cCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCC
Confidence 566666666554433 267999999999999999 33 7899999999999999655 554 9999999999999
Q ss_pred CCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccccCCCCCc--
Q 014262 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRL-- 387 (428)
Q Consensus 310 ~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L-- 387 (428)
.+|. .+++|++|+|++|.|.+ +|. .+++|++|+|++|.|+.++.|. .+|+.|+|++|.|+.++. -..+|
T Consensus 134 ~lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~ 204 (571)
T 3cvr_A 134 MLPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA-VPVRNHH 204 (571)
T ss_dssp CCCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC-----
T ss_pred CCCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh-HHHhhhc
Confidence 9987 78999999999999998 454 5789999999999999997755 899999999999998864 22377
Q ss_pred -----cEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCCC
Q 014262 388 -----QVLAASKNKISTLK-GFPHLPLLEVSILCIARICI 421 (428)
Q Consensus 388 -----~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~~ 421 (428)
+.|+|++|.|+.+| .+..+++|++|+|++|+|..
T Consensus 205 ~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ---CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99999999999998 57789999999999999864
No 83
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=1.7e-19 Score=200.86 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=144.0
Q ss_pred CCCCCCCCCceeeeCCCCcee------------------cccccc--cCCCccEEEecCCCcCccCccccCCCCCCcEEE
Q 014262 243 SNLSGQRRAGTPQSKDSRFIV------------------LPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVY 302 (428)
Q Consensus 243 ~~fs~l~~L~~L~L~~n~L~~------------------LP~~~~--~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~ 302 (428)
..|..+.+|+.|++.+|.|.. +|..+. .+.+|++|+|++|.+.+..|..|.++++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 357788889999999999987 888876 889999999999998888888889999999999
Q ss_pred ccCCC-CCC--Ccc-c-------cCCCcccEEEccCCCCCCCCCC--CCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEE
Q 014262 303 LRDNM-LST--LEG-I-------EILTRVKVLDLSFNDFKGPGFE--PLENCKALQQLYLAGNQITSLGSLPELPNLEFL 369 (428)
Q Consensus 303 Ls~N~-Ls~--lp~-l-------~~L~~L~~LdLs~N~L~~~~p~--~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L 369 (428)
|++|+ |++ +|. + ..+++|++|+|++|.|. .+|. .|.++++|++|+|++|.|..++.|..+++|+.|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L 600 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDL 600 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEE
Confidence 99997 875 442 3 34558999999999888 5777 788888999999999988888888888888888
Q ss_pred EcCCCcCCccc--cCCCCC-ccEEEccCCCCCCCC-CCCCCC--CCcEEEccCCCCC
Q 014262 370 SVAQNKLKSIA--MASQPR-LQVLAASKNKISTLK-GFPHLP--LLEVSILCIARIC 420 (428)
Q Consensus 370 ~Ls~N~L~~l~--l~~L~~-L~~L~Ls~N~Lt~lp-~l~~L~--~L~~L~Ls~N~I~ 420 (428)
+|++|.|..++ +..+++ |+.|+|++|.|..+| .+..+. +|++|+|++|+|.
T Consensus 601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp ECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred ECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence 88888888775 777777 888888888888877 344443 3777777777764
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=4.8e-20 Score=192.48 Aligned_cols=175 Identities=15% Similarity=0.069 Sum_probs=144.2
Q ss_pred CCCCCceeeeCCCCceecc-cccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc------------
Q 014262 247 GQRRAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG------------ 313 (428)
Q Consensus 247 ~l~~L~~L~L~~n~L~~LP-~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~------------ 313 (428)
.+.+++.|++.+|.+..++ ..+..+.+|++|+|++|.|.++.+ |..+++|++|+|++|.|..++.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N 109 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence 3448999999999999876 466689999999999999998876 8899999999999888776531
Q ss_pred ------ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC--CCCC-CCCCCCEEEcCCCcCCccc-cCC
Q 014262 314 ------IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLP-ELPNLEFLSVAQNKLKSIA-MAS 383 (428)
Q Consensus 314 ------l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~-~L~~L~~L~Ls~N~L~~l~-l~~ 383 (428)
...+++|++|+|++|.|.+..+..|..+++|++|+|++|.|.++ ..+. .+++|+.|+|++|.|.+++ +..
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence 12357788888888888887777888888999999999988876 2443 6888999999999988884 666
Q ss_pred CCCccEEEccCCCCCCCC-CCCCCCCCcEEEccCCCCCCcc
Q 014262 384 QPRLQVLAASKNKISTLK-GFPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 384 L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
+++|++|+|++|.|++++ .|..+++|++|+|++|.|..++
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccc
Confidence 889999999999999875 6888899999999999987654
No 85
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2e-18 Score=162.36 Aligned_cols=147 Identities=27% Similarity=0.329 Sum_probs=131.9
Q ss_pred ccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccC
Q 014262 274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAG 351 (428)
Q Consensus 274 L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~ 351 (428)
.+.+++.++.+..++... .++|++|+|++|.|..++ .|..+++|++|+|++|.|..+.+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467999999999887542 389999999999999984 388999999999999999987778889999999999999
Q ss_pred CcCCCCC--CCCCCCCCCEEEcCCCcCCccc--cCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCcc
Q 014262 352 NQITSLG--SLPELPNLEFLSVAQNKLKSIA--MASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAH 423 (428)
Q Consensus 352 N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~ 423 (428)
|.|+.++ .|..+++|++|+|++|+|..++ +..+++|++|+|++|+|+.++ .|..+++|++|+|.+|+| |.|+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9999995 4789999999999999999985 788999999999999999987 488999999999999998 5554
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=4.4e-19 Score=190.37 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=149.6
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
|.+.++.|..+. .|..+.+|+.|+|.+|.|..++. +..+.+|+.|+|.+|.|.++. .|..|++|++|+|++|.|.
T Consensus 48 L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~ 122 (605)
T 1m9s_A 48 IIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGIS 122 (605)
T ss_dssp CBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCC
T ss_pred EECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCC
Confidence 566666666654 57888999999999999999887 678999999999999999875 4899999999999999999
Q ss_pred CCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCcc-ccCCCCCcc
Q 014262 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSI-AMASQPRLQ 388 (428)
Q Consensus 310 ~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l-~l~~L~~L~ 388 (428)
.++.+..|++|+.|+|++|.|.++ ..|..|++|+.|+|++|.|.++..+..+++|+.|+|++|.|.++ .+..|++|+
T Consensus 123 ~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~ 200 (605)
T 1m9s_A 123 DINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLD 200 (605)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCS
T ss_pred CCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCC
Confidence 999999999999999999999985 67899999999999999999996699999999999999999998 488999999
Q ss_pred EEEccCCCCCCCC
Q 014262 389 VLAASKNKISTLK 401 (428)
Q Consensus 389 ~L~Ls~N~Lt~lp 401 (428)
.|+|.+|.|...+
T Consensus 201 ~L~L~~N~l~~~p 213 (605)
T 1m9s_A 201 VLELFSQECLNKP 213 (605)
T ss_dssp EEECCSEEEECCC
T ss_pred EEEccCCcCcCCc
Confidence 9999999988754
No 87
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=3e-19 Score=186.81 Aligned_cols=193 Identities=14% Similarity=0.104 Sum_probs=154.7
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceecc-cccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN 306 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP-~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N 306 (428)
..+.+.++.+..+....|.++.+|++|++.+|.+..++ ..+..+.+|++|+|++|.|.++.+..|.++++|++|+|++|
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 45688888888887788888999999999999988776 45667889999999999999888888888999999999999
Q ss_pred CCCCC--c-cccCCCcccEEEccCCC-CCCCCCCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcCCccc
Q 014262 307 MLSTL--E-GIEILTRVKVLDLSFND-FKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSIA 380 (428)
Q Consensus 307 ~Ls~l--p-~l~~L~~L~~LdLs~N~-L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L~~l~ 380 (428)
.|..+ + .+..+++|++|+|++|. +....+..|.++++|++|+|.+|.|.+. ..+..+.+|+.|++.+|.+..++
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence 98864 2 48888999999999988 4444446788899999999999998875 46788888899999888887764
Q ss_pred ---cCCCCCccEEEccCCCCCCCC-----CCCCCCCCcEEEccCCCCC
Q 014262 381 ---MASQPRLQVLAASKNKISTLK-----GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 381 ---l~~L~~L~~L~Ls~N~Lt~lp-----~l~~L~~L~~L~Ls~N~I~ 420 (428)
+..+++|++|+|++|.|.+++ ....+.+|++|++.+|.+.
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 456889999999999988752 2345667777777777653
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=1e-18 Score=184.35 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=146.3
Q ss_pred CCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc----cccCCCcccEEEc
Q 014262 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE----GIEILTRVKVLDL 325 (428)
Q Consensus 250 ~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp----~l~~L~~L~~LdL 325 (428)
+++.|++.+|.+..++. ...+.+|++|+|++|.|.+..+..|..+++|++|+|++|+|+.++ .+..+++|++|+|
T Consensus 332 ~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred cceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 46777777777654442 135789999999999999988888999999999999999999875 3789999999999
Q ss_pred cCCCCCC-CCCCCCCCCCCCcEEEccCCcCCCCCCCCCC-CCCCEEEcCCCcCCccc--cCCCCCccEEEccCCCCCCCC
Q 014262 326 SFNDFKG-PGFEPLENCKALQQLYLAGNQITSLGSLPEL-PNLEFLSVAQNKLKSIA--MASQPRLQVLAASKNKISTLK 401 (428)
Q Consensus 326 s~N~L~~-~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L-~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~lp 401 (428)
++|.|.+ .....|..+++|++|+|++|.|++.. +..+ ++|+.|+|++|+|+.++ +..+++|++|+|++|+|+.+|
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCC
Confidence 9999998 44456889999999999999997642 1222 79999999999999985 668999999999999999998
Q ss_pred C--CCCCCCCcEEEccCCCC-CCccc
Q 014262 402 G--FPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 402 ~--l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
. |..+++|++|+|++|+| |+|++
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred HHHHhcCCCCCEEEecCCCcCCCcch
Confidence 3 89999999999999998 56654
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=175.51 Aligned_cols=173 Identities=18% Similarity=0.139 Sum_probs=134.9
Q ss_pred CCCceeeeCCCCce-eccccc--ccCCCccEEEecCCCcCccCc----cccCCCCCCcEEEccCCCCCCCc--cccCCCc
Q 014262 249 RRAGTPQSKDSRFI-VLPQVE--IKAGDDVRLDLRGHRVRSLIA----SGLNLQPNLEFVYLRDNMLSTLE--GIEILTR 319 (428)
Q Consensus 249 ~~L~~L~L~~n~L~-~LP~~~--~~l~~L~~LdLs~N~i~~l~~----~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~ 319 (428)
.++++|++.+|.+. .+|..+ ..+.+|++|+|++|.|.+..+ ..+..+++|++|+|++|.|..++ .|..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 45888999998887 455555 567889999999999887443 33557889999999999988875 4778899
Q ss_pred ccEEEccCCCCCCC----CCCCCCCCCCCcEEEccCCcCCCCCC-----CCCCCCCCEEEcCCCcCCcc-c--cCCC---
Q 014262 320 VKVLDLSFNDFKGP----GFEPLENCKALQQLYLAGNQITSLGS-----LPELPNLEFLSVAQNKLKSI-A--MASQ--- 384 (428)
Q Consensus 320 L~~LdLs~N~L~~~----~p~~l~~L~~L~~L~Ls~N~Lt~l~~-----l~~L~~L~~L~Ls~N~L~~l-~--l~~L--- 384 (428)
|++|+|++|++.+. ....+..+++|++|+|++|.|+.++. +..+++|++|+|++|.|.++ | +..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 99999999987641 12334678889999999999887643 46778999999999999887 3 4554
Q ss_pred CCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCcc
Q 014262 385 PRLQVLAASKNKISTLKG-FPHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 385 ~~L~~L~Ls~N~Lt~lp~-l~~L~~L~~L~Ls~N~I~~~~ 423 (428)
++|++|+|++|+|+.+|. +. ++|++|+|++|+|..++
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC
T ss_pred CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc
Confidence 689999999999998873 42 78999999999988754
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.3e-18 Score=160.17 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=145.5
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccc-cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~-~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~L 308 (428)
+...++.+..+... -..++++|++.+|.+..++...+ .+.+|++|+|.+|+|.++.+..|..+++|++|+|++|.|
T Consensus 12 v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCccCCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 34444444444322 23578999999999998887654 789999999999999999888899999999999999999
Q ss_pred CCCcc--ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccccCCC
Q 014262 309 STLEG--IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIAMASQ 384 (428)
Q Consensus 309 s~lp~--l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~l~~L 384 (428)
..++. |..+++|++|+|++|.|.+..+..|..+++|++|+|++|.|.+++ .|..+++|++|+|.+|.+. ..+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----~~~ 164 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----CTC 164 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----CCT
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----cCC
Confidence 99864 789999999999999999987778999999999999999999985 4889999999999999875 356
Q ss_pred CCccEEEccCCCCCC-CC-CCCCCCC
Q 014262 385 PRLQVLAASKNKIST-LK-GFPHLPL 408 (428)
Q Consensus 385 ~~L~~L~Ls~N~Lt~-lp-~l~~L~~ 408 (428)
+.|++|++.+|.+++ +| .++.++.
T Consensus 165 ~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 165 PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCHHHHHHHHHhCCceeeccCccccC
Confidence 789999999999986 55 5666543
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=5.4e-18 Score=175.57 Aligned_cols=176 Identities=18% Similarity=0.182 Sum_probs=119.0
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.++.+..+.. ...+|+.|++.+|.+..++.. ..+|++|+|.+|.|.+++ .|.++++|++|+|++|+|+
T Consensus 96 L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 96 LVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp EECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCS
T ss_pred EEccCCcCCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCc
Confidence 4444554444321 235677777777777766543 257777777777777754 3777777777777777777
Q ss_pred CCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccc-cCCCCCcc
Q 014262 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA-MASQPRLQ 388 (428)
Q Consensus 310 ~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~-l~~L~~L~ 388 (428)
.+|.+ +.+|++|+|++|.|.+ +| .|.++++|++|++++|.|.+++.+. .+|++|++++|.|..++ +..+++|+
T Consensus 167 ~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~n~l~~lp~~~~l~~L~ 240 (454)
T 1jl5_A 167 KLPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNNILEELPELQNLPFLT 240 (454)
T ss_dssp CCCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred ccCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc--CcccEEECcCCcCCcccccCCCCCCC
Confidence 76643 3477777777777776 34 5777777777777777777765432 47777888877777764 66777788
Q ss_pred EEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCc
Q 014262 389 VLAASKNKISTLKGFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 389 ~L~Ls~N~Lt~lp~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
+|++++|+|+.++.+ +++|++|+|++|+|..+
T Consensus 241 ~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 241 TIYADNNLLKTLPDL--PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp EEECCSSCCSSCCSC--CTTCCEEECCSSCCSCC
T ss_pred EEECCCCcCCccccc--ccccCEEECCCCccccc
Confidence 888888887776643 35667777777766553
No 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=184.21 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=48.6
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCcc-CccccCCCCCCcEEEccCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSL-IASGLNLQPNLEFVYLRDNML 308 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l-~~~~l~~l~~L~~L~Ls~N~L 308 (428)
+.+.++.+..+....|.++.+|++|++.+|.+..||.. .+.+|++|+|++|.|.++ .|..|.++++|++|+|++|.|
T Consensus 50 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 50 LIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp EECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred EecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 45555555555555666666666666666666666655 466666666666666653 345566666666666666655
Q ss_pred C
Q 014262 309 S 309 (428)
Q Consensus 309 s 309 (428)
.
T Consensus 128 ~ 128 (520)
T 2z7x_B 128 E 128 (520)
T ss_dssp C
T ss_pred c
Confidence 4
No 93
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=162.75 Aligned_cols=147 Identities=17% Similarity=0.302 Sum_probs=131.8
Q ss_pred cEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc---ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccC
Q 014262 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG---IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAG 351 (428)
Q Consensus 275 ~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~---l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~ 351 (428)
+.|++++|.++.++.. + ...+++|+|++|.|+.++. |..+++|++|+|++|.|.++.+..|.++.+|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccC-C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5899999999988653 3 3467999999999999842 78999999999999999998888999999999999999
Q ss_pred CcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCCC-C-CCCCCCCCcEEEccCCCC-CCcc
Q 014262 352 NQITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKISTL-K-GFPHLPLLEVSILCIARI-CIAH 423 (428)
Q Consensus 352 N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~l-p-~l~~L~~L~~L~Ls~N~I-~~~~ 423 (428)
|.|..++ .|..+++|++|+|++|.|..++ |..+.+|++|+|++|.|+.+ + .|..+++|++|+|.+|+| |+|+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999995 4899999999999999999983 88899999999999999997 3 689999999999999998 6666
Q ss_pred c
Q 014262 424 L 424 (428)
Q Consensus 424 l 424 (428)
+
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 4
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=191.83 Aligned_cols=128 Identities=16% Similarity=0.034 Sum_probs=85.5
Q ss_pred CCcccCCCcccccCCCCCCCCCCCceeeeCCCC-ceec-ccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccC
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSR-FIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRD 305 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~-L~~L-P~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~ 305 (428)
..|.+.++.|..+....|.++.+|++|++.+|. +..+ |..+..+.+|++|+|++|.|.++.+..|.++++|++|+|++
T Consensus 27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence 346777777777777777777777777777773 3355 44555677777777777777777777777777777777777
Q ss_pred CCCCC-C-cc--ccCCCcccEEEccCCCCCCCCC-CCCCCCCCCcEEEccCCcCC
Q 014262 306 NMLST-L-EG--IEILTRVKVLDLSFNDFKGPGF-EPLENCKALQQLYLAGNQIT 355 (428)
Q Consensus 306 N~Ls~-l-p~--l~~L~~L~~LdLs~N~L~~~~p-~~l~~L~~L~~L~Ls~N~Lt 355 (428)
|.|.+ + .. |..+++|++|+|++|.+.+..+ ..|.+|++|++|+|++|.|.
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 77765 2 22 6667777777777777666433 35666666666666666553
No 95
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=191.00 Aligned_cols=81 Identities=16% Similarity=0.047 Sum_probs=56.8
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCcee-cccc--cccCCCccEEEecCCCcCccCc-cccCCCCCCcEEEccC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIV-LPQV--EIKAGDDVRLDLRGHRVRSLIA-SGLNLQPNLEFVYLRD 305 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~-LP~~--~~~l~~L~~LdLs~N~i~~l~~-~~l~~l~~L~~L~Ls~ 305 (428)
|.+.++.+..+....|.++.+|++|++.+|.+.. ++.. +..+.+|++|+|++|.+.++.+ ..|.++++|++|+|++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 5666677776666777777777777777777764 3433 4467777777777777777654 4577777777877777
Q ss_pred CCCCC
Q 014262 306 NMLST 310 (428)
Q Consensus 306 N~Ls~ 310 (428)
|.|..
T Consensus 158 N~i~~ 162 (844)
T 3j0a_A 158 NQIFL 162 (844)
T ss_dssp SCCCC
T ss_pred CcCCe
Confidence 77654
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.4e-18 Score=174.05 Aligned_cols=175 Identities=22% Similarity=0.231 Sum_probs=147.2
Q ss_pred CCCCCC----CCcccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccc--cCCCccEEEecCCCcCccCccccCCC
Q 014262 222 RSPSVS----SGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQ 295 (428)
Q Consensus 222 ~~ps~~----s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~--~l~~L~~LdLs~N~i~~l~~~~l~~l 295 (428)
.+|..| ..+.+.++.+..+...- ...++.|++.+|.|..++...+ .+.+|++|+|++|+|.++.+..|..+
T Consensus 11 ~Cp~~C~C~~~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 11 SCPANCLCASNILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp TCCTTCEEETTEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCCCEECCCEEEeCCCCcCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 466655 33566666666554422 2357899999999999987765 78999999999999999999899999
Q ss_pred CCCcEEEccCCCCCCCcc--ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CC---CCCCCCCE
Q 014262 296 PNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SL---PELPNLEF 368 (428)
Q Consensus 296 ~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l---~~L~~L~~ 368 (428)
++|++|+|++|+|..++. |..+.+|++|+|++|.|..+.+..|.++.+|++|+|++|.|..++ .| ..+++|+.
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCE
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCE
Confidence 999999999999999864 889999999999999999988999999999999999999999986 23 57999999
Q ss_pred EEcCCCcCCccc---cCCCCC--ccEEEccCCCCCC
Q 014262 369 LSVAQNKLKSIA---MASQPR--LQVLAASKNKIST 399 (428)
Q Consensus 369 L~Ls~N~L~~l~---l~~L~~--L~~L~Ls~N~Lt~ 399 (428)
|+|++|.|..++ +..++. |+.|+|.+|.+..
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 999999999986 555665 4889999998763
No 97
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=9.1e-19 Score=194.98 Aligned_cols=192 Identities=12% Similarity=0.083 Sum_probs=106.0
Q ss_pred ccCCCcccccCCCCCCCCCCCceeeeCCCC-cee--cccccccC-------CCccEEEecCCCcCccCc-cccCCCCCCc
Q 014262 231 RNGSLSSSLDRSSNLSGQRRAGTPQSKDSR-FIV--LPQVEIKA-------GDDVRLDLRGHRVRSLIA-SGLNLQPNLE 299 (428)
Q Consensus 231 ~L~~~si~~l~~~~fs~l~~L~~L~L~~n~-L~~--LP~~~~~l-------~~L~~LdLs~N~i~~l~~-~~l~~l~~L~ 299 (428)
.+.++.+...-...|..+.+|+.|++.+|. +.. +|..+..+ ++|++|+|++|.|..++. ..|.++++|+
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCC
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCC
Confidence 344443333333445556666666666665 552 55544333 366666666666664332 1466666666
Q ss_pred EEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCC-CcEEEccCCcCCCCCC-CCCC--------------
Q 014262 300 FVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKA-LQQLYLAGNQITSLGS-LPEL-------------- 363 (428)
Q Consensus 300 ~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~-L~~L~Ls~N~Lt~l~~-l~~L-------------- 363 (428)
+|+|++|.|..+|.|..+++|++|+|++|.|. .+|..|..+++ |++|+|++|.|..++. +..+
T Consensus 577 ~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 577 LLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp EEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred EEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc
Confidence 66666666666666666666666666666666 35555666666 6666666666665542 2222
Q ss_pred -----------------CCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCCCCC-C-C-------CCCCCcEEEc
Q 014262 364 -----------------PNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKISTLKG-F-P-------HLPLLEVSIL 414 (428)
Q Consensus 364 -----------------~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~lp~-l-~-------~L~~L~~L~L 414 (428)
.+|+.|+|++|.|..++ +..+++|+.|+|++|.|..+|. + . +|++|++|+|
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEEC
Confidence 24555555555555443 2345566666666666665542 1 1 1225666666
Q ss_pred cCCCCCCcc
Q 014262 415 CIARICIAH 423 (428)
Q Consensus 415 s~N~I~~~~ 423 (428)
++|+|..++
T Consensus 736 s~N~L~~lp 744 (876)
T 4ecn_A 736 RFNKLTSLS 744 (876)
T ss_dssp CSSCCCCCC
T ss_pred CCCCCccch
Confidence 666665444
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=1.4e-17 Score=172.42 Aligned_cols=158 Identities=21% Similarity=0.203 Sum_probs=97.9
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.++.+..+. .|..+.+|++|++.+|.+..+|... .+|++|+|.+|.+.+++ .|..+++|++|+|++|.|.
T Consensus 136 L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 136 LGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp EECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCS
T ss_pred EECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCC
Confidence 455555555544 3666666666666666666665532 46666666666666653 3666666777777776666
Q ss_pred CCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccccCCCCCccE
Q 014262 310 TLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQV 389 (428)
Q Consensus 310 ~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L~~ 389 (428)
+++.+. .+|++|+|++|.+.. +| .|..+++|++|+|++|+|.+++.+ +.+|+.|+|++|.|.+++- .+.+|++
T Consensus 209 ~l~~~~--~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~-~~~~L~~ 281 (454)
T 1jl5_A 209 KLPDLP--LSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPE-LPQSLTF 281 (454)
T ss_dssp SCCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCC-CCTTCCE
T ss_pred cCCCCc--CcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCc-ccCcCCE
Confidence 665432 466677777776663 44 366677777777777777666532 3566777777776666542 2356666
Q ss_pred EEccCCCCCCCC
Q 014262 390 LAASKNKISTLK 401 (428)
Q Consensus 390 L~Ls~N~Lt~lp 401 (428)
|++++|.|++++
T Consensus 282 L~ls~N~l~~l~ 293 (454)
T 1jl5_A 282 LDVSENIFSGLS 293 (454)
T ss_dssp EECCSSCCSEES
T ss_pred EECcCCccCccc
Confidence 666666666543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=3.6e-18 Score=170.17 Aligned_cols=178 Identities=17% Similarity=0.070 Sum_probs=126.2
Q ss_pred CCCceeeeCCCCceecccc-cccCCCccEEEecCCCcCc-cCccccCCCCCCcE-EEccCCCCCCCc--cccCCCcccEE
Q 014262 249 RRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRS-LIASGLNLQPNLEF-VYLRDNMLSTLE--GIEILTRVKVL 323 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~~-~~~l~~L~~LdLs~N~i~~-l~~~~l~~l~~L~~-L~Ls~N~Ls~lp--~l~~L~~L~~L 323 (428)
..+++|++.+|+|..||.. +..+.+|++|+|++|+|.+ +....|.++++|++ +++.+|+|..++ .|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4567777777777777764 3466777777777777654 44455677766554 555667777764 26777777777
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEEccC-CcCCCCC--CCCCC-CCCCEEEcCCCcCCccc--cCCCCCccEEEcc-CCC
Q 014262 324 DLSFNDFKGPGFEPLENCKALQQLYLAG-NQITSLG--SLPEL-PNLEFLSVAQNKLKSIA--MASQPRLQVLAAS-KNK 396 (428)
Q Consensus 324 dLs~N~L~~~~p~~l~~L~~L~~L~Ls~-N~Lt~l~--~l~~L-~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls-~N~ 396 (428)
++++|.|....+..+..+.++..|++.+ |.|..++ .|..+ ..|+.|+|++|+|+.++ .....+|+.|++. +|.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 7777777766555566666666777654 4566653 34444 36888999999999885 3455678899987 478
Q ss_pred CCCCC--CCCCCCCCcEEEccCCCCCCccccc
Q 014262 397 ISTLK--GFPHLPLLEVSILCIARICIAHLLI 426 (428)
Q Consensus 397 Lt~lp--~l~~L~~L~~L~Ls~N~I~~~~l~~ 426 (428)
|+.++ .|..+++|++|||++|+|+.++...
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~ 221 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYG 221 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChhh
Confidence 88887 4789999999999999998876543
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=2.4e-18 Score=181.38 Aligned_cols=169 Identities=20% Similarity=0.134 Sum_probs=103.2
Q ss_pred CCceeeeCCCCceecccc-cccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEcc
Q 014262 250 RAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLS 326 (428)
Q Consensus 250 ~L~~L~L~~n~L~~LP~~-~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs 326 (428)
.+++|+|++|.|..|+.. +..+.+|++|||++|+|.++.+..|.++++|++|+|++|+|+.++. |.++.+|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 456667777777666543 4456667777777777766666666666777777777776666642 5666677777777
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC---CCCCCCCCCEEEcCCCcCCccc---cCCCC----CccEEEccCCC
Q 014262 327 FNDFKGPGFEPLENCKALQQLYLAGNQITSLG---SLPELPNLEFLSVAQNKLKSIA---MASQP----RLQVLAASKNK 396 (428)
Q Consensus 327 ~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~---~l~~L~~L~~L~Ls~N~L~~l~---l~~L~----~L~~L~Ls~N~ 396 (428)
+|+|.++.+..|.++++|++|+|++|.|..+. .+..+++|++|+|++|+|+++. +..+. .+..++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 77666655556666677777777777666542 3455666777777777666653 22221 22356666666
Q ss_pred CCCCC-CCCCCCCCcEEEccCCC
Q 014262 397 ISTLK-GFPHLPLLEVSILCIAR 418 (428)
Q Consensus 397 Lt~lp-~l~~L~~L~~L~Ls~N~ 418 (428)
|..++ .......+..|++.+|.
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCC
T ss_pred ccccCcccccchhhhhhhhhccc
Confidence 66543 23333344555555553
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.7e-17 Score=178.64 Aligned_cols=179 Identities=21% Similarity=0.175 Sum_probs=85.7
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCcccc-----------------
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGL----------------- 292 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l----------------- 292 (428)
|.+.++.|..+.. .+.+|++|+|.+|.|..||. .+.+|++|+|.+|.|.+++. .+
T Consensus 66 L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N~l~~lp 137 (622)
T 3g06_A 66 LVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLP 137 (622)
T ss_dssp EEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC-CCTTCCEEECCSSCCSCCC
T ss_pred EEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC-CCCCcCEEECCCCCCCcCC
Confidence 4555555544433 34555666666666655555 24555555555555555432 00
Q ss_pred CCCCCCcEEEccCCCCCCCcc----ccC--------------CCcccEEEccCCCCCCCCCCCCCC--------------
Q 014262 293 NLQPNLEFVYLRDNMLSTLEG----IEI--------------LTRVKVLDLSFNDFKGPGFEPLEN-------------- 340 (428)
Q Consensus 293 ~~l~~L~~L~Ls~N~Ls~lp~----l~~--------------L~~L~~LdLs~N~L~~~~p~~l~~-------------- 340 (428)
..+++|++|+|++|.|..++. +.. +++|++|+|++|.|.+ ++..+..
T Consensus 138 ~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 138 VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSL 216 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSC
T ss_pred CCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCccccc
Confidence 012455555555555555432 111 1445555555555544 1111110
Q ss_pred ---CCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccccCCCCCccEEEccCCCCCCCC-CCCCCCCCcEEEccC
Q 014262 341 ---CKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNKISTLK-GFPHLPLLEVSILCI 416 (428)
Q Consensus 341 ---L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L~~L~Ls~N~Lt~lp-~l~~L~~L~~L~Ls~ 416 (428)
+++|+.|+|++|.|+.++ ..+++|+.|+|++|.|+.++. .+.+|+.|+|++|.|+.+| .|..+++|+.|+|.+
T Consensus 217 ~~~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~-~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 217 PALPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM-LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred CCCCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc-ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence 133344444444444333 233445555555555554443 4455555666666555554 455566666666666
Q ss_pred CCCC
Q 014262 417 ARIC 420 (428)
Q Consensus 417 N~I~ 420 (428)
|+|.
T Consensus 294 N~l~ 297 (622)
T 3g06_A 294 NPLS 297 (622)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6654
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.4e-17 Score=177.57 Aligned_cols=159 Identities=25% Similarity=0.182 Sum_probs=138.7
Q ss_pred CCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEEccCCC
Q 014262 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFND 329 (428)
Q Consensus 250 ~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~ 329 (428)
+++.|+|.+|++..||..+ +.+|++|+|++|.|..++ ..+++|++|+|++|.|+.+|.|.. +|++|+|++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCc
Confidence 7899999999999999877 478999999999999776 447899999999999999987444 99999999999
Q ss_pred CCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccccCCCCCccEEEccCCCCCCCCCCCCCCCC
Q 014262 330 FKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNKISTLKGFPHLPLL 409 (428)
Q Consensus 330 L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L~~L~Ls~N~Lt~lp~l~~L~~L 409 (428)
|.+ +|. .+++|++|+|++|.|+.++. .+++|+.|+|++|.|+.++. -..+|++|+|++|.|+.+|.|.. +|
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~lp~~~~--~L 202 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLESLPAVPV--RN 202 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCC-----
T ss_pred CCC-CCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCchhhHHH--hh
Confidence 998 555 68999999999999999987 67899999999999999865 22899999999999999887544 67
Q ss_pred -------cEEEccCCCCCCcccc
Q 014262 410 -------EVSILCIARICIAHLL 425 (428)
Q Consensus 410 -------~~L~Ls~N~I~~~~l~ 425 (428)
++|+|++|.|..++..
T Consensus 203 ~~~~~~L~~L~Ls~N~l~~lp~~ 225 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRITHIPEN 225 (571)
T ss_dssp -----CCEEEECCSSCCCCCCGG
T ss_pred hcccccceEEecCCCcceecCHH
Confidence 9999999999887643
No 103
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=2.1e-17 Score=177.80 Aligned_cols=138 Identities=22% Similarity=0.218 Sum_probs=97.1
Q ss_pred CCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc----cc---------
Q 014262 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG----IE--------- 315 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~----l~--------- 315 (428)
.+|++|++.+|.+..+|.. +.+|+.|+|.+|.|.+++ ..+++|++|+|++|.|..++. +.
T Consensus 141 ~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l 213 (622)
T 3g06_A 141 PGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRL 213 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcc
Confidence 3444444444444444331 233444444444444332 223677777777777776542 11
Q ss_pred -----CCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCCCcCCccc--cCCCCCcc
Q 014262 316 -----ILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQNKLKSIA--MASQPRLQ 388 (428)
Q Consensus 316 -----~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~ 388 (428)
.+++|++|+|++|.|.+ +| ..+++|++|+|++|.|..++. .+++|+.|+|++|.|..+| +..+++|+
T Consensus 214 ~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 214 TSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSET 287 (622)
T ss_dssp SSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTC
T ss_pred cccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccC
Confidence 13678889999998887 44 456899999999999999987 7789999999999999885 88999999
Q ss_pred EEEccCCCCCC
Q 014262 389 VLAASKNKIST 399 (428)
Q Consensus 389 ~L~Ls~N~Lt~ 399 (428)
.|+|++|.|.+
T Consensus 288 ~L~L~~N~l~~ 298 (622)
T 3g06_A 288 TVNLEGNPLSE 298 (622)
T ss_dssp EEECCSCCCCH
T ss_pred EEEecCCCCCC
Confidence 99999999987
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=8.4e-17 Score=160.29 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=128.2
Q ss_pred CCCcccCCCcccccCCCCCCCCCCCceeeeCCCCce-ecccccc-cCCCccE-EEecCCCcCccCccccCCCCCCcEEEc
Q 014262 227 SSGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFI-VLPQVEI-KAGDDVR-LDLRGHRVRSLIASGLNLQPNLEFVYL 303 (428)
Q Consensus 227 ~s~L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~-~LP~~~~-~l~~L~~-LdLs~N~i~~l~~~~l~~l~~L~~L~L 303 (428)
-..|.|.++.|..+....|.++.+|++|++.+|.+. .++...+ .+..+.+ +++.+|+|..+.+..|..+++|++|+|
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 356899999999999999999999999999999975 5776544 5667665 677889999999999999999999999
Q ss_pred cCCCCCCCcc--ccCCCc--------------------------ccEEEccCCCCCCCCCCCCCCCCCCcEEEcc-CCcC
Q 014262 304 RDNMLSTLEG--IEILTR--------------------------VKVLDLSFNDFKGPGFEPLENCKALQQLYLA-GNQI 354 (428)
Q Consensus 304 s~N~Ls~lp~--l~~L~~--------------------------L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls-~N~L 354 (428)
.+|.|..++. +....+ |++|+|++|.|..+.+ .+..+.+|++|++. +|.+
T Consensus 112 ~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-~~f~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDNNNL 190 (350)
T ss_dssp EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TSSTTEEEEEEECTTCTTC
T ss_pred cccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-hhccccchhHHhhccCCcc
Confidence 9999887653 222233 4445555555554222 22233445555554 3455
Q ss_pred CCCC--CCCCCCCCCEEEcCCCcCCccccCCCCCccEEEccC-CCCCCCCCCCCCCCCcEEEccCC
Q 014262 355 TSLG--SLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASK-NKISTLKGFPHLPLLEVSILCIA 417 (428)
Q Consensus 355 t~l~--~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L~~L~Ls~-N~Lt~lp~l~~L~~L~~L~Ls~N 417 (428)
+.++ .|..+++|++|+|++|+|+.++...+.+|+.|.+.+ +.+..+|.+..+++|+.+++.++
T Consensus 191 ~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 191 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred cCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 5553 355566666666666666666555555555555443 33555666666666777776544
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=2.9e-17 Score=146.05 Aligned_cols=131 Identities=22% Similarity=0.219 Sum_probs=95.8
Q ss_pred CCCccEEEecCCCcC-ccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 014262 271 AGDDVRLDLRGHRVR-SLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYL 349 (428)
Q Consensus 271 l~~L~~LdLs~N~i~-~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~L 349 (428)
+.+|++|+|.+|.|. +..+..|..+++|++|+|.+|.|..+..+..+++|++|+|++|.|.+.++..+..+++|++|+|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 567888888888887 3445556777888888888888877766777888888888888887766666666778888888
Q ss_pred cCCcCCCCC---CCCCCCCCCEEEcCCCcCCccc------cCCCCCccEEEccCCCCCCCC
Q 014262 350 AGNQITSLG---SLPELPNLEFLSVAQNKLKSIA------MASQPRLQVLAASKNKISTLK 401 (428)
Q Consensus 350 s~N~Lt~l~---~l~~L~~L~~L~Ls~N~L~~l~------l~~L~~L~~L~Ls~N~Lt~lp 401 (428)
++|.|.+++ .+..+++|++|+|++|.|..++ +..+++|++|++.+|.+..++
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 888777763 5666777777777777776652 456677777777777766655
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=3.7e-18 Score=167.52 Aligned_cols=190 Identities=22% Similarity=0.199 Sum_probs=145.0
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCcee--cccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCC-
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIV--LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN- 306 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~--LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N- 306 (428)
+++.++.+...... +..+.+|+.|++.+|.+.. ++..+..+.+|++|+|.+|.+.+..+..|..+++|++|+|.+|
T Consensus 75 L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 75 FRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp EECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred EEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 44555555444333 4467889999999998773 6777778899999999999988877777888999999999999
Q ss_pred CCCC--Ccc-ccCCCcccEEEccCC-CCCCC-CCCCCCCCC-CCcEEEccCCc--CCC--CC-CCCCCCCCCEEEcCCCc
Q 014262 307 MLST--LEG-IEILTRVKVLDLSFN-DFKGP-GFEPLENCK-ALQQLYLAGNQ--ITS--LG-SLPELPNLEFLSVAQNK 375 (428)
Q Consensus 307 ~Ls~--lp~-l~~L~~L~~LdLs~N-~L~~~-~p~~l~~L~-~L~~L~Ls~N~--Lt~--l~-~l~~L~~L~~L~Ls~N~ 375 (428)
.++. ++. +..+++|++|+|++| .+.+. ++..+..++ +|++|+|++|. ++. ++ .+..+++|+.|+|++|.
T Consensus 154 ~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 6774 444 778899999999999 88753 455677888 99999999994 442 32 45678899999999998
Q ss_pred -CCcc---ccCCCCCccEEEccCCC-CCC--CCCCCCCCCCcEEEccCCCCCC
Q 014262 376 -LKSI---AMASQPRLQVLAASKNK-IST--LKGFPHLPLLEVSILCIARICI 421 (428)
Q Consensus 376 -L~~l---~l~~L~~L~~L~Ls~N~-Lt~--lp~l~~L~~L~~L~Ls~N~I~~ 421 (428)
+++. .+..+++|++|+|++|. +.. +..+..+++|++|+|.+| +..
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 234 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 5543 37788999999999995 332 225778899999999988 543
No 107
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=5.1e-16 Score=139.31 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=111.6
Q ss_pred CceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccCC
Q 014262 251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFN 328 (428)
Q Consensus 251 L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N 328 (428)
.+.++|.++++..+|..+ ..+|++|+|.+|+|.++.+..|..+++|++|+|++|.|+.++. |..+++|++|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 478899999999999776 5789999999999999988888999999999999999999864 788999999999999
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCcc
Q 014262 329 DFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSI 379 (428)
Q Consensus 329 ~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l 379 (428)
.|.+..+..|..+++|++|+|++|.|..++ .+..+++|++|+|++|.|...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 999877777889999999999999999885 367889999999999988764
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=5.1e-18 Score=180.79 Aligned_cols=175 Identities=22% Similarity=0.215 Sum_probs=96.8
Q ss_pred CCCCCCCceeeeCCCCceecccccccCCCccEEEecCCC-------------cCccCccccCCCCCCcEEE-ccCCCCCC
Q 014262 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHR-------------VRSLIASGLNLQPNLEFVY-LRDNMLST 310 (428)
Q Consensus 245 fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~-------------i~~l~~~~l~~l~~L~~L~-Ls~N~Ls~ 310 (428)
+.....++.|+|.+|++..||..+..+.+|+.|++.+|. +.+..+..|..+++|+.|+ +..|.+..
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 456778889999999999999998888999999987664 4444454455554554444 33333222
Q ss_pred Ccc-------ccC--CCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCccc
Q 014262 311 LEG-------IEI--LTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSIA 380 (428)
Q Consensus 311 lp~-------l~~--L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l~ 380 (428)
++. +.. ...|++|+|++|.|.+ +|. |..|.+|+.|+|++|.|+.+| .|..+++|+.|+|++|.|++++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc
Confidence 210 000 1134555555555554 232 555555555555555555443 3445555555555555555543
Q ss_pred -cCCCCCccEEEccCCCCCCC--C-CCCCCCCCcEEEccCCCCCC
Q 014262 381 -MASQPRLQVLAASKNKISTL--K-GFPHLPLLEVSILCIARICI 421 (428)
Q Consensus 381 -l~~L~~L~~L~Ls~N~Lt~l--p-~l~~L~~L~~L~Ls~N~I~~ 421 (428)
+..+++|+.|+|++|.|+++ | .|..|++|+.|+|++|+|+.
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 44455555555555555554 3 34455555555555555443
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=2.8e-16 Score=143.63 Aligned_cols=126 Identities=22% Similarity=0.246 Sum_probs=113.9
Q ss_pred ceeeeCCCCceecccccccCCCccEEEecCCCcCccCcc-ccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCC
Q 014262 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIAS-GLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFN 328 (428)
Q Consensus 252 ~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~-~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N 328 (428)
+.++|.++++..||..+ ..+|++|+|.+|.|.++.+. .|..+++|++|+|++|.|+.+. .|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 68999999999999977 45999999999999998875 4889999999999999999983 4889999999999999
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcCCcc
Q 014262 329 DFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLKSI 379 (428)
Q Consensus 329 ~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L~~l 379 (428)
+|.+..+..|.++++|++|+|++|+|.++ ..|..+++|++|+|++|.|...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99998888899999999999999999987 3688899999999999998854
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=3e-18 Score=172.34 Aligned_cols=178 Identities=21% Similarity=0.175 Sum_probs=116.4
Q ss_pred CCCCCCceeeeCCCCcee-----cccccccCCCccEEEecCCCcCccCccccC----CC---------CCCcEEEccCCC
Q 014262 246 SGQRRAGTPQSKDSRFIV-----LPQVEIKAGDDVRLDLRGHRVRSLIASGLN----LQ---------PNLEFVYLRDNM 307 (428)
Q Consensus 246 s~l~~L~~L~L~~n~L~~-----LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~----~l---------~~L~~L~Ls~N~ 307 (428)
..+.+|++|++.+|.+.. ++..+..+.+|++|+|++|.|....+..|. .+ ++|++|+|++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455667777777777664 555555667777777777776543332222 22 677777777777
Q ss_pred CCC--Cc----cccCCCcccEEEccCCCCCC-----CCCCCCCCCCCCcEEEccCCcCCC-----C-CCCCCCCCCCEEE
Q 014262 308 LST--LE----GIEILTRVKVLDLSFNDFKG-----PGFEPLENCKALQQLYLAGNQITS-----L-GSLPELPNLEFLS 370 (428)
Q Consensus 308 Ls~--lp----~l~~L~~L~~LdLs~N~L~~-----~~p~~l~~L~~L~~L~Ls~N~Lt~-----l-~~l~~L~~L~~L~ 370 (428)
|.. ++ .+..+++|++|+|++|.|.. ..+..|..+++|++|+|++|.|+. + ..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 762 23 25566777777777777762 233366677778888888777742 2 2466777788888
Q ss_pred cCCCcCCcc-----c--c--CCCCCccEEEccCCCCCC-----CC-CC-CCCCCCcEEEccCCCCCCcc
Q 014262 371 VAQNKLKSI-----A--M--ASQPRLQVLAASKNKIST-----LK-GF-PHLPLLEVSILCIARICIAH 423 (428)
Q Consensus 371 Ls~N~L~~l-----~--l--~~L~~L~~L~Ls~N~Lt~-----lp-~l-~~L~~L~~L~Ls~N~I~~~~ 423 (428)
|++|.|... + + +.+++|++|+|++|.|+. ++ .+ .++++|++|+|.+|+|....
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 888877764 1 2 447778888888888877 54 33 45778888888888876543
No 111
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=5.2e-16 Score=142.34 Aligned_cols=124 Identities=25% Similarity=0.337 Sum_probs=112.6
Q ss_pred ceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccCCC
Q 014262 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFND 329 (428)
Q Consensus 252 ~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N~ 329 (428)
++++|.++++..+|..+ ..+|++|+|.+|.|..++ ..|..+++|++|+|++|.|+.++. |..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57999999999999876 578999999999999776 679999999999999999999863 8999999999999999
Q ss_pred CCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCc
Q 014262 330 FKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKS 378 (428)
Q Consensus 330 L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~ 378 (428)
|..+.+..|..+++|++|+|++|.|..++ .|..+++|+.|+|.+|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99988889999999999999999999985 48889999999999998764
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=2.9e-18 Score=172.45 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=149.1
Q ss_pred CcccCCCcccccCC----CCCCCCCCCceeeeCCCCcee----ccccc-------ccCCCccEEEecCCCcCc----cCc
Q 014262 229 GLRNGSLSSSLDRS----SNLSGQRRAGTPQSKDSRFIV----LPQVE-------IKAGDDVRLDLRGHRVRS----LIA 289 (428)
Q Consensus 229 ~L~L~~~si~~l~~----~~fs~l~~L~~L~L~~n~L~~----LP~~~-------~~l~~L~~LdLs~N~i~~----l~~ 289 (428)
.|.+.++.+..... ..|..+.+|++|++.+|.+.. +|..+ ..+.+|++|+|++|.|.. ..+
T Consensus 36 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 115 (386)
T 2ca6_A 36 EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115 (386)
T ss_dssp EEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHH
Confidence 35566665544322 237778899999999976653 34333 467999999999999988 355
Q ss_pred cccCCCCCCcEEEccCCCCCCCc------cccCC---------CcccEEEccCCCCCC-CCC---CCCCCCCCCcEEEcc
Q 014262 290 SGLNLQPNLEFVYLRDNMLSTLE------GIEIL---------TRVKVLDLSFNDFKG-PGF---EPLENCKALQQLYLA 350 (428)
Q Consensus 290 ~~l~~l~~L~~L~Ls~N~Ls~lp------~l~~L---------~~L~~LdLs~N~L~~-~~p---~~l~~L~~L~~L~Ls 350 (428)
..|..+++|++|+|++|.|.... .+..+ ++|++|+|++|.|.. .++ ..|..+++|++|+|+
T Consensus 116 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence 56788999999999999987532 13334 899999999999973 233 356678999999999
Q ss_pred CCcCCC------CC-CCCCCCCCCEEEcCCCcCCc-----cc--cCCCCCccEEEccCCCCCCC-----C-CC--CCCCC
Q 014262 351 GNQITS------LG-SLPELPNLEFLSVAQNKLKS-----IA--MASQPRLQVLAASKNKISTL-----K-GF--PHLPL 408 (428)
Q Consensus 351 ~N~Lt~------l~-~l~~L~~L~~L~Ls~N~L~~-----l~--l~~L~~L~~L~Ls~N~Lt~l-----p-~l--~~L~~ 408 (428)
+|.|.. ++ .+..+++|+.|+|++|.|.. ++ +..+++|++|+|++|.|+.. + .+ ..+++
T Consensus 196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275 (386)
T ss_dssp SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence 999983 23 78889999999999999953 33 78899999999999999874 2 34 45899
Q ss_pred CcEEEccCCCCCC
Q 014262 409 LEVSILCIARICI 421 (428)
Q Consensus 409 L~~L~Ls~N~I~~ 421 (428)
|++|+|++|.|..
T Consensus 276 L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 276 LQTLRLQYNEIEL 288 (386)
T ss_dssp CCEEECCSSCCBH
T ss_pred eEEEECcCCcCCH
Confidence 9999999999876
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=6.4e-18 Score=169.02 Aligned_cols=193 Identities=15% Similarity=0.068 Sum_probs=127.5
Q ss_pred CcccCCCcccccCC----CCCCCCC-CCceeeeCCCCceecc-cccccC-----CCccEEEecCCCcCccCcccc----C
Q 014262 229 GLRNGSLSSSLDRS----SNLSGQR-RAGTPQSKDSRFIVLP-QVEIKA-----GDDVRLDLRGHRVRSLIASGL----N 293 (428)
Q Consensus 229 ~L~L~~~si~~l~~----~~fs~l~-~L~~L~L~~n~L~~LP-~~~~~l-----~~L~~LdLs~N~i~~l~~~~l----~ 293 (428)
.+++.++.+..+.. ..|..+. +|++|++.+|.+.... ..+..+ ..|++|+|++|.|.+..+..| .
T Consensus 26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 105 (362)
T 3goz_A 26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence 35666666665554 4555666 7888888888777543 233332 778888888888877665533 3
Q ss_pred CC-CCCcEEEccCCCCCCCcc------ccC-CCcccEEEccCCCCCCCCCC----CCCCCC-CCcEEEccCCcCCCCC--
Q 014262 294 LQ-PNLEFVYLRDNMLSTLEG------IEI-LTRVKVLDLSFNDFKGPGFE----PLENCK-ALQQLYLAGNQITSLG-- 358 (428)
Q Consensus 294 ~l-~~L~~L~Ls~N~Ls~lp~------l~~-L~~L~~LdLs~N~L~~~~p~----~l~~L~-~L~~L~Ls~N~Lt~l~-- 358 (428)
.+ ++|++|+|++|.|...+. +.. ..+|++|+|++|.|.+.... .+..++ +|++|+|++|.|+...
T Consensus 106 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 185 (362)
T 3goz_A 106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA 185 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred hCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH
Confidence 33 678888888888776532 333 35788888888887753332 233444 7888888888887653
Q ss_pred ----CCCCC-CCCCEEEcCCCcCCcc-----c--cCC-CCCccEEEccCCCCCCCC------CCCCCCCCcEEEccCCCC
Q 014262 359 ----SLPEL-PNLEFLSVAQNKLKSI-----A--MAS-QPRLQVLAASKNKISTLK------GFPHLPLLEVSILCIARI 419 (428)
Q Consensus 359 ----~l~~L-~~L~~L~Ls~N~L~~l-----~--l~~-L~~L~~L~Ls~N~Lt~lp------~l~~L~~L~~L~Ls~N~I 419 (428)
.+..+ .+|+.|+|++|.|.+. + +.. .++|++|+|++|.|.+.+ .+..+++|++|+|++|.|
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence 23444 4788888888888773 1 333 357888888888888753 356778888888888875
Q ss_pred CC
Q 014262 420 CI 421 (428)
Q Consensus 420 ~~ 421 (428)
..
T Consensus 266 ~~ 267 (362)
T 3goz_A 266 KN 267 (362)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.6e-16 Score=139.85 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=117.3
Q ss_pred CCCceeeeCCCCce--ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCC-Ccc-ccCCCcccEEE
Q 014262 249 RRAGTPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST-LEG-IEILTRVKVLD 324 (428)
Q Consensus 249 ~~L~~L~L~~n~L~--~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~-lp~-l~~L~~L~~Ld 324 (428)
.+++.|++.+|.+. .+|..+..+.+|++|+|.+|.|.++ ..|..+++|++|+|++|.|.. ++. +..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67899999999998 9998877899999999999999998 569999999999999999999 565 55699999999
Q ss_pred ccCCCCCCCC-CCCCCCCCCCcEEEccCCcCCCCCC-----CCCCCCCCEEEcCCCcCCccc
Q 014262 325 LSFNDFKGPG-FEPLENCKALQQLYLAGNQITSLGS-----LPELPNLEFLSVAQNKLKSIA 380 (428)
Q Consensus 325 Ls~N~L~~~~-p~~l~~L~~L~~L~Ls~N~Lt~l~~-----l~~L~~L~~L~Ls~N~L~~l~ 380 (428)
|++|.|.+.. +..|..+++|++|+|++|.|..++. +..+++|++|++.+|.+..++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 9999999853 2789999999999999999999864 788999999999999988875
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=3.5e-18 Score=167.67 Aligned_cols=170 Identities=16% Similarity=0.111 Sum_probs=143.9
Q ss_pred CCCceeeeCCCCceecccccccCCCccEEEecCCCcCcc-CccccCCCCCCcEEEccCCCCCCC--ccccCCCcccEEEc
Q 014262 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSL-IASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL 325 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l-~~~~l~~l~~L~~L~Ls~N~Ls~l--p~l~~L~~L~~LdL 325 (428)
.+++.+++.+|.+...+..++.+.+|++|+|++|.+.+. .+..+..+++|++|+|.+|.+... ..+..+++|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 678999999999998777777899999999999999875 666789999999999999998853 34788999999999
Q ss_pred cCC-CCCCC-CCCCCCCCCCCcEEEccCC-cCCCC---CCCCCCC-CCCEEEcCCC--cCCc--c--ccCCCCCccEEEc
Q 014262 326 SFN-DFKGP-GFEPLENCKALQQLYLAGN-QITSL---GSLPELP-NLEFLSVAQN--KLKS--I--AMASQPRLQVLAA 392 (428)
Q Consensus 326 s~N-~L~~~-~p~~l~~L~~L~~L~Ls~N-~Lt~l---~~l~~L~-~L~~L~Ls~N--~L~~--l--~l~~L~~L~~L~L 392 (428)
++| .+.+. ++..+..+++|++|+|++| .|++. ..+..++ +|++|+|++| .+++ + .+..+++|++|+|
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 999 67752 4556788999999999999 88863 2467788 9999999999 4543 3 2678899999999
Q ss_pred cCCC-CCC--CCCCCCCCCCcEEEccCCC
Q 014262 393 SKNK-IST--LKGFPHLPLLEVSILCIAR 418 (428)
Q Consensus 393 s~N~-Lt~--lp~l~~L~~L~~L~Ls~N~ 418 (428)
++|. +++ ++.+..+++|++|+|.+|.
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 9999 665 4578899999999999995
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.4e-15 Score=138.98 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=105.2
Q ss_pred cEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc---ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccC
Q 014262 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG---IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAG 351 (428)
Q Consensus 275 ~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~---l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~ 351 (428)
+.|++++|+|..++.. + ..+|++|+|.+|.|..++. |..+++|++|+|++|.|.++.+..|.++.+|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccC-C--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6899999999887654 3 2389999999999998853 78899999999999999998888999999999999999
Q ss_pred CcCCCCC--CCCCCCCCCEEEcCCCcCCcc---ccCCCCCccEEEccCCCCCC
Q 014262 352 NQITSLG--SLPELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASKNKIST 399 (428)
Q Consensus 352 N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L~Ls~N~Lt~ 399 (428)
|.|.+++ .|..+++|++|+|++|+|.++ .+..+++|++|+|++|.|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9999884 488899999999999999887 27778889999999998874
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=138.61 Aligned_cols=121 Identities=18% Similarity=0.278 Sum_probs=83.6
Q ss_pred cEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 014262 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQ 353 (428)
Q Consensus 275 ~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~ 353 (428)
+.+++.+|.|..++.. + ..+|++|+|.+|.|+.++ .|..+++|++|+|++|.|..+.+..|.++.+|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4677888888776543 2 257778888888877775 47777777778887777777666677777777777777777
Q ss_pred CCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCC
Q 014262 354 ITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKIS 398 (428)
Q Consensus 354 Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt 398 (428)
|..++ .|..+++|++|+|++|.|..++ |..+++|+.|+|.+|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77764 4666666777777666666663 445556666666666554
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=1.6e-16 Score=138.57 Aligned_cols=123 Identities=26% Similarity=0.322 Sum_probs=80.3
Q ss_pred CCCccEEEecCCCcC-ccCccccCCCCCCcEEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 014262 271 AGDDVRLDLRGHRVR-SLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYL 349 (428)
Q Consensus 271 l~~L~~LdLs~N~i~-~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~L 349 (428)
..+|++|+|.+|.|. +..+..|..+++|++|+|++|.|..+..+..+++|++|+|++|.|.+.+|..+..+++|++|+|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 356777777777776 4445556777777777777777777766677777777777777777655655556677777777
Q ss_pred cCCcCCCC---CCCCCCCCCCEEEcCCCcCCccc------cCCCCCccEEEcc
Q 014262 350 AGNQITSL---GSLPELPNLEFLSVAQNKLKSIA------MASQPRLQVLAAS 393 (428)
Q Consensus 350 s~N~Lt~l---~~l~~L~~L~~L~Ls~N~L~~l~------l~~L~~L~~L~Ls 393 (428)
++|.|+++ ..+..+++|++|+|++|.|.+++ +..+++|++|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77776664 34555666666666666665542 3445555555554
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=9.3e-18 Score=167.83 Aligned_cols=195 Identities=15% Similarity=0.094 Sum_probs=150.6
Q ss_pred CCcccCCCcccccCCCCCCCC-----CCCceeeeCCCCceecccc-----cccC-CCccEEEecCCCcCccCcccc----
Q 014262 228 SGLRNGSLSSSLDRSSNLSGQ-----RRAGTPQSKDSRFIVLPQV-----EIKA-GDDVRLDLRGHRVRSLIASGL---- 292 (428)
Q Consensus 228 s~L~L~~~si~~l~~~~fs~l-----~~L~~L~L~~n~L~~LP~~-----~~~l-~~L~~LdLs~N~i~~l~~~~l---- 292 (428)
..+.+.++.+.......|..+ .+|++|++.+|.+...... +..+ ..|++|+|++|.|.+.....|
T Consensus 54 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 133 (362)
T 3goz_A 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH
Confidence 346677776665544444443 8899999999999865443 3334 799999999999998877554
Q ss_pred CC-CCCCcEEEccCCCCCCCc------cccCCC-cccEEEccCCCCCCCCCCCC----CCC-CCCcEEEccCCcCCCCC-
Q 014262 293 NL-QPNLEFVYLRDNMLSTLE------GIEILT-RVKVLDLSFNDFKGPGFEPL----ENC-KALQQLYLAGNQITSLG- 358 (428)
Q Consensus 293 ~~-l~~L~~L~Ls~N~Ls~lp------~l~~L~-~L~~LdLs~N~L~~~~p~~l----~~L-~~L~~L~Ls~N~Lt~l~- 358 (428)
.. ..+|++|+|++|.|.... .+..++ +|++|+|++|.|.+..+..| ..+ .+|++|+|++|.|....
T Consensus 134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH
Confidence 34 369999999999998642 245555 99999999999987665433 344 59999999999999842
Q ss_pred -----CCCC-CCCCCEEEcCCCcCCccc-------cCCCCCccEEEccCCCCCCCC---------CCCCCCCCcEEEccC
Q 014262 359 -----SLPE-LPNLEFLSVAQNKLKSIA-------MASQPRLQVLAASKNKISTLK---------GFPHLPLLEVSILCI 416 (428)
Q Consensus 359 -----~l~~-L~~L~~L~Ls~N~L~~l~-------l~~L~~L~~L~Ls~N~Lt~lp---------~l~~L~~L~~L~Ls~ 416 (428)
.+.. .++|++|+|++|.|.+.+ +..+++|+.|+|++|.|..+. .+..+++|++|||++
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 3444 458999999999999863 478899999999999966542 578899999999999
Q ss_pred CCCCCc
Q 014262 417 ARICIA 422 (428)
Q Consensus 417 N~I~~~ 422 (428)
|+|...
T Consensus 294 N~l~~~ 299 (362)
T 3goz_A 294 KEIHPS 299 (362)
T ss_dssp CBCCGG
T ss_pred CcCCCc
Confidence 998655
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=1.2e-16 Score=143.54 Aligned_cols=128 Identities=27% Similarity=0.406 Sum_probs=86.2
Q ss_pred cCCCccEEEecCCCcCccCccccCCC-CCCcEEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEE
Q 014262 270 KAGDDVRLDLRGHRVRSLIASGLNLQ-PNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLY 348 (428)
Q Consensus 270 ~l~~L~~LdLs~N~i~~l~~~~l~~l-~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~ 348 (428)
.+.+|++|+|.+|.|..+ +. +..+ ++|++|+|++|.|+.++.|..+++|++|+|++|.|.+..+..|..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 466777777777777766 32 3333 37777777777777776677777777777777777764444456777777777
Q ss_pred ccCCcCCCCC---CCCCCCCCCEEEcCCCcCCccc------cCCCCCccEEEccCCCCCC
Q 014262 349 LAGNQITSLG---SLPELPNLEFLSVAQNKLKSIA------MASQPRLQVLAASKNKIST 399 (428)
Q Consensus 349 Ls~N~Lt~l~---~l~~L~~L~~L~Ls~N~L~~l~------l~~L~~L~~L~Ls~N~Lt~ 399 (428)
|++|.|..++ .+..+++|+.|+|++|.|..++ +..+++|++||+.+|.+..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7777776664 3566667777777777766553 4556666667666666543
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=2.4e-16 Score=141.66 Aligned_cols=132 Identities=19% Similarity=0.267 Sum_probs=79.0
Q ss_pred CCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCccc
Q 014262 244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVK 321 (428)
Q Consensus 244 ~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~ 321 (428)
.|..+.+++.|++.+|.+..++.......+|++|+|++|.|.++ ..|..+++|++|+|++|.|..++. +..+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34455566666666666666644322223666666666666665 346666666666666666666543 35666666
Q ss_pred EEEccCCCCCCCCCC--CCCCCCCCcEEEccCCcCCCCCC-----CCCCCCCCEEEcCCCcCCc
Q 014262 322 VLDLSFNDFKGPGFE--PLENCKALQQLYLAGNQITSLGS-----LPELPNLEFLSVAQNKLKS 378 (428)
Q Consensus 322 ~LdLs~N~L~~~~p~--~l~~L~~L~~L~Ls~N~Lt~l~~-----l~~L~~L~~L~Ls~N~L~~ 378 (428)
+|+|++|.|.. ++. .|..+++|++|+|++|.|..++. +..+++|++|++.+|.+.+
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 66666666654 333 55566666666666666666543 5556666666666665544
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=8e-15 Score=131.49 Aligned_cols=123 Identities=23% Similarity=0.280 Sum_probs=87.6
Q ss_pred ccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccC
Q 014262 274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAG 351 (428)
Q Consensus 274 L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~ 351 (428)
.+.+++.+|++..++.. ..++|++|+|.+|.|..++. |..+++|++|+|++|.|..+.+..|..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45777888887776533 23577888888888777753 66777788888888877776666677777777777777
Q ss_pred CcCCCCC--CCCCCCCCCEEEcCCCcCCccc---cCCCCCccEEEccCCCCCC
Q 014262 352 NQITSLG--SLPELPNLEFLSVAQNKLKSIA---MASQPRLQVLAASKNKIST 399 (428)
Q Consensus 352 N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~---l~~L~~L~~L~Ls~N~Lt~ 399 (428)
|.|+.++ .|..+++|++|+|++|.|+.++ +..+++|++|+|++|.|..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7777774 3567777777777777777664 4556677777777777665
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2.1e-16 Score=172.96 Aligned_cols=154 Identities=23% Similarity=0.306 Sum_probs=56.0
Q ss_pred ccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc-ccCCCcccEEEccCCCCCCCCCCCCCCCCC
Q 014262 265 PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG-IEILTRVKVLDLSFNDFKGPGFEPLENCKA 343 (428)
Q Consensus 265 P~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~-l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~ 343 (428)
+..+..+..|+.|+|++|.|..+... +..+++|++|+|++|.|+.+|. |..|++|++|+|++|.|.. +|..|.+|.+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCC
Confidence 33333444555555555555444333 2244555555555555554432 4445555555555555542 3444555555
Q ss_pred CcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCccc----------------------cCCCCCccEEEccCC-----
Q 014262 344 LQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSIA----------------------MASQPRLQVLAASKN----- 395 (428)
Q Consensus 344 L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l~----------------------l~~L~~L~~L~Ls~N----- 395 (428)
|++|+|++|.|..++ .|..|.+|++|+|++|.|.+.+ ......|+.|++.+|
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n~~~~~ 374 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTDGEPQR 374 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeeccccccc
Confidence 555555555555443 3444555555555555544321 011234666777666
Q ss_pred ---CCCCCC--CCCCCCCCcEEEccCCCCC
Q 014262 396 ---KISTLK--GFPHLPLLEVSILCIARIC 420 (428)
Q Consensus 396 ---~Lt~lp--~l~~L~~L~~L~Ls~N~I~ 420 (428)
.|..+. .+..+..+..+.+.+|.++
T Consensus 375 ~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 375 EYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------------CCC
T ss_pred ccCCccccccchhhcccccceeeeeccccc
Confidence 122111 2344555666777777765
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.2e-15 Score=132.98 Aligned_cols=124 Identities=25% Similarity=0.219 Sum_probs=110.7
Q ss_pred CCCCceeeeCCCCce--ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCC-Ccc-ccCCCcccEE
Q 014262 248 QRRAGTPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST-LEG-IEILTRVKVL 323 (428)
Q Consensus 248 l~~L~~L~L~~n~L~--~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~-lp~-l~~L~~L~~L 323 (428)
..+++.|++.+|.+. .+|..+..+.+|++|+|++|.|.++ ..|..+++|++|+|++|.|.. ++. +..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367899999999998 8998878899999999999999998 568999999999999999999 665 5569999999
Q ss_pred EccCCCCCCC-CCCCCCCCCCCcEEEccCCcCCCCCC-----CCCCCCCCEEEcCC
Q 014262 324 DLSFNDFKGP-GFEPLENCKALQQLYLAGNQITSLGS-----LPELPNLEFLSVAQ 373 (428)
Q Consensus 324 dLs~N~L~~~-~p~~l~~L~~L~~L~Ls~N~Lt~l~~-----l~~L~~L~~L~Ls~ 373 (428)
+|++|.|.+. .+..+..+++|++|+|++|.|.+++. +..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999984 34789999999999999999999865 78899999999864
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=2.1e-18 Score=158.14 Aligned_cols=128 Identities=22% Similarity=0.247 Sum_probs=71.0
Q ss_pred ccCCCCCCcEEEccCCCCCCCccccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEE
Q 014262 291 GLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLS 370 (428)
Q Consensus 291 ~l~~l~~L~~L~Ls~N~Ls~lp~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~ 370 (428)
.|..+++|++|+|++|.|..++.+..+++|++|+|++|.|.. +|..+..+++|++|+|++|.|.+++.+..+++|++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~ 121 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence 455555555555555555555555555555555555555553 3444444555666666666555555555555566666
Q ss_pred cCCCcCCccc----cCCCCCccEEEccCCCCCCC-CC-----------CCCCCCCcEEEccCCCCCC
Q 014262 371 VAQNKLKSIA----MASQPRLQVLAASKNKISTL-KG-----------FPHLPLLEVSILCIARICI 421 (428)
Q Consensus 371 Ls~N~L~~l~----l~~L~~L~~L~Ls~N~Lt~l-p~-----------l~~L~~L~~L~Ls~N~I~~ 421 (428)
|++|.|..++ +..+++|++|+|.+|.|.+. +. +..+++|++|| +|.|+.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 6666665542 45556666666666665442 11 45566666664 555543
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=1.1e-16 Score=163.46 Aligned_cols=173 Identities=16% Similarity=0.117 Sum_probs=103.2
Q ss_pred CCceeeeCCCCcee-----cccccccCCCccEEEecCCCcCccC-----ccccCCCCCCcEEEccCCCCCC-----Cc-c
Q 014262 250 RAGTPQSKDSRFIV-----LPQVEIKAGDDVRLDLRGHRVRSLI-----ASGLNLQPNLEFVYLRDNMLST-----LE-G 313 (428)
Q Consensus 250 ~L~~L~L~~n~L~~-----LP~~~~~l~~L~~LdLs~N~i~~l~-----~~~l~~l~~L~~L~Ls~N~Ls~-----lp-~ 313 (428)
+|+.|++.+|.+.. ++..+..+.+|++|+|++|.|.+.. +..+..+++|++|+|++|.|+. ++ .
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 45555555555553 3444444556666666666655432 2222345666666666666665 22 2
Q ss_pred ccCCCcccEEEccCCCCCCCCCCCCC-----CCCCCcEEEccCCcCCCCC------CCCCCCCCCEEEcCCCcCCccc--
Q 014262 314 IEILTRVKVLDLSFNDFKGPGFEPLE-----NCKALQQLYLAGNQITSLG------SLPELPNLEFLSVAQNKLKSIA-- 380 (428)
Q Consensus 314 l~~L~~L~~LdLs~N~L~~~~p~~l~-----~L~~L~~L~Ls~N~Lt~l~------~l~~L~~L~~L~Ls~N~L~~l~-- 380 (428)
+..+++|++|+|++|.|.+..+..+. ..++|++|+|++|.|+... .+..+++|++|+|++|.|.+..
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 44566666666666666432221221 2246777777777666541 3445678888888888777642
Q ss_pred -----cC-CCCCccEEEccCCCCCC-----CC-CCCCCCCCcEEEccCCCCCCc
Q 014262 381 -----MA-SQPRLQVLAASKNKIST-----LK-GFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 381 -----l~-~L~~L~~L~Ls~N~Lt~-----lp-~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
+. .+++|++|+|++|.|++ ++ .+..+++|++|+|++|+|...
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 12 25688888888888884 33 466778888888888887643
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=4.1e-14 Score=126.94 Aligned_cols=105 Identities=20% Similarity=0.231 Sum_probs=82.5
Q ss_pred CceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccCC
Q 014262 251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFN 328 (428)
Q Consensus 251 L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N 328 (428)
.+.++|.++++..+|..+ ...|++|+|++|+|.++.+..|..+++|++|+|++|+|+.++. |..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 467888888888888776 4778888888888888888778888888888888888888753 677888888888888
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCcCCCC
Q 014262 329 DFKGPGFEPLENCKALQQLYLAGNQITSL 357 (428)
Q Consensus 329 ~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l 357 (428)
+|.++.+..|..+++|++|+|.+|.|...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88876666677777788888777777643
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=1.1e-14 Score=159.32 Aligned_cols=147 Identities=16% Similarity=0.058 Sum_probs=98.5
Q ss_pred CceeeeCCCCceecccccccCCC-----ccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cccCCCcccEEE
Q 014262 251 AGTPQSKDSRFIVLPQVEIKAGD-----DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLD 324 (428)
Q Consensus 251 L~~L~L~~n~L~~LP~~~~~l~~-----L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l~~L~~L~~Ld 324 (428)
+..|+|.++++..++..+..... +..+++..|.+. +.+..|..+..|+.|+|++|.|..++ .+..+++|++|+
T Consensus 175 ~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 175 TPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY 253 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred cceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence 34445555555544443322222 223334445444 55677899999999999999999986 477999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC-CCCCCCCCCEEEcCCCcCCccc--cCCCCCccEEEccCCCCCC
Q 014262 325 LSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG-SLPELPNLEFLSVAQNKLKSIA--MASQPRLQVLAASKNKIST 399 (428)
Q Consensus 325 Ls~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~-~l~~L~~L~~L~Ls~N~L~~l~--l~~L~~L~~L~Ls~N~Lt~ 399 (428)
|++|.|. .+|..|.+|.+|++|+|++|.|+.++ .|..|.+|++|+|++|.|..+| |..|.+|++|+|++|.|.+
T Consensus 254 Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 254 LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred eeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 9999999 57889999999999999999999985 6899999999999999999985 8899999999999999986
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=3.6e-16 Score=159.68 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=46.7
Q ss_pred cccEEEccCCCCCCC----CCCCCCCCCCCcEEEccCCcCCCC------C-CCCCCCCCCEEEcCCCcCCcc-------c
Q 014262 319 RVKVLDLSFNDFKGP----GFEPLENCKALQQLYLAGNQITSL------G-SLPELPNLEFLSVAQNKLKSI-------A 380 (428)
Q Consensus 319 ~L~~LdLs~N~L~~~----~p~~l~~L~~L~~L~Ls~N~Lt~l------~-~l~~L~~L~~L~Ls~N~L~~l-------~ 380 (428)
+|++|+|++|.|... ++..+..+++|++|+|++|.|.+. + .+..+++|++|+|++|.|+.. .
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 444444444444432 123333445555555555544432 1 122345555555555555542 1
Q ss_pred cCCCCCccEEEccCCCCCCCC--C-----CCCCCCCcEEEccCCCCCC
Q 014262 381 MASQPRLQVLAASKNKISTLK--G-----FPHLPLLEVSILCIARICI 421 (428)
Q Consensus 381 l~~L~~L~~L~Ls~N~Lt~lp--~-----l~~L~~L~~L~Ls~N~I~~ 421 (428)
+..+++|++|+|++|.|.+.. . ....++|++|+|++|.|..
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 333455555555555554311 0 1122455666666665543
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=6.7e-14 Score=126.21 Aligned_cols=104 Identities=24% Similarity=0.320 Sum_probs=88.2
Q ss_pred ceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc--ccCCCcccEEEccCCC
Q 014262 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG--IEILTRVKVLDLSFND 329 (428)
Q Consensus 252 ~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~--l~~L~~L~~LdLs~N~ 329 (428)
+.++|.++++..||..+ ..+|++|+|++|+|.++.+..|..+++|++|+|++|+|+.++. |..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 67899999999999877 4889999999999999988888889999999999999988864 6788888888888888
Q ss_pred CCCCCCCCCCCCCCCcEEEccCCcCCCC
Q 014262 330 FKGPGFEPLENCKALQQLYLAGNQITSL 357 (428)
Q Consensus 330 L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l 357 (428)
|..+.+..|..+++|++|+|.+|.|...
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 8886666688888888888888887654
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=7.6e-14 Score=137.54 Aligned_cols=174 Identities=15% Similarity=0.142 Sum_probs=137.8
Q ss_pred cccCCCCCCC--------CCCCceeeeCCCCceecccccc-cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC-
Q 014262 238 SLDRSSNLSG--------QRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM- 307 (428)
Q Consensus 238 ~~l~~~~fs~--------l~~L~~L~L~~n~L~~LP~~~~-~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~- 307 (428)
..+....|.+ +.+|+.|++.+ .+..|+...| .+.+|+.|+|.+|.+..+.+..|.++.++.+|.+..+.
T Consensus 82 ~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~ 160 (329)
T 3sb4_A 82 NFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160 (329)
T ss_dssp TEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred cccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh
Confidence 3667788888 99999999988 8888887655 67899999999999998888888888888877765521
Q ss_pred ---CCCCcc--c--------------------------------------------------cCCCcccEEEccCCCCCC
Q 014262 308 ---LSTLEG--I--------------------------------------------------EILTRVKVLDLSFNDFKG 332 (428)
Q Consensus 308 ---Ls~lp~--l--------------------------------------------------~~L~~L~~LdLs~N~L~~ 332 (428)
+..+.. | ..+.+|+.|+|.+|.+..
T Consensus 161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred hhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce
Confidence 111100 0 027789999999988888
Q ss_pred CCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCC-EEEcCCCcCCcc---ccCCCCCccEEEccCCCCCCCC--CCC
Q 014262 333 PGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLE-FLSVAQNKLKSI---AMASQPRLQVLAASKNKISTLK--GFP 404 (428)
Q Consensus 333 ~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~-~L~Ls~N~L~~l---~l~~L~~L~~L~Ls~N~Lt~lp--~l~ 404 (428)
+....|.+|.+|+.|+|.+| |..++ .|.+|.+|+ .|+|.+ .++.+ .|.++.+|+.|+|.+|.|+.++ .|.
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 77788899999999999887 77774 688899998 999988 67766 4888889999999999998876 588
Q ss_pred CCCCCcEEEc
Q 014262 405 HLPLLEVSIL 414 (428)
Q Consensus 405 ~L~~L~~L~L 414 (428)
++++|+.|+.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 8888988874
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=1.5e-13 Score=135.32 Aligned_cols=175 Identities=13% Similarity=0.127 Sum_probs=137.6
Q ss_pred CCCCceeeeCCCCce--------------------ecccccc-c--------CCCccEEEecCCCcCccCccccCCCCCC
Q 014262 248 QRRAGTPQSKDSRFI--------------------VLPQVEI-K--------AGDDVRLDLRGHRVRSLIASGLNLQPNL 298 (428)
Q Consensus 248 l~~L~~L~L~~n~L~--------------------~LP~~~~-~--------l~~L~~LdLs~N~i~~l~~~~l~~l~~L 298 (428)
+.+|+.|||.+|.+. .||...| . +.+|+.|+|.+ .++.+....|.+|.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 566778888777777 4555544 5 79999999998 8999999999999999
Q ss_pred cEEEccCCCCCCCc--cccCCCcccEEEccCCCC----CCCCCCCC----------------------------------
Q 014262 299 EFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDF----KGPGFEPL---------------------------------- 338 (428)
Q Consensus 299 ~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L----~~~~p~~l---------------------------------- 338 (428)
+.|+|.+|.+..++ .|..+.+|.+|.+..+.+ .......|
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 99999999988875 377777777777665221 11000011
Q ss_pred ----------------CCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCcc---ccCCCCCcc-EEEccCCC
Q 014262 339 ----------------ENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSI---AMASQPRLQ-VLAASKNK 396 (428)
Q Consensus 339 ----------------~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~-~L~Ls~N~ 396 (428)
..|.+|+.|+|.+|.|+.++ .|.+|.+|+.|+|.+| |+.+ .|.++.+|+ .|+|.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 02789999999999999995 6999999999999998 8777 389999999 999998 7
Q ss_pred CCCCC--CCCCCCCCcEEEccCCCCCCcccc
Q 014262 397 ISTLK--GFPHLPLLEVSILCIARICIAHLL 425 (428)
Q Consensus 397 Lt~lp--~l~~L~~L~~L~Ls~N~I~~~~l~ 425 (428)
++.|+ .|.+|.+|+.|+|.+|.|..++..
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence 88875 699999999999999988665543
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=3.3e-16 Score=143.41 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=115.8
Q ss_pred CceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCcc-ccCCCcccEEEccCCCCCCCCCCCC
Q 014262 260 RFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG-IEILTRVKVLDLSFNDFKGPGFEPL 338 (428)
Q Consensus 260 ~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp~-l~~L~~L~~LdLs~N~L~~~~p~~l 338 (428)
.+..+|..+..+.+|++|+|++|.|.+++ .|..+++|++|+|++|.|..++. +..+++|++|+|++|+|.+ ++ .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-cc
Confidence 56667778888999999999999999975 68899999999999999999876 5567999999999999998 34 68
Q ss_pred CCCCCCcEEEccCCcCCCCC---CCCCCCCCCEEEcCCCcCCccc-------------cCCCCCccEEEccCCCCCC
Q 014262 339 ENCKALQQLYLAGNQITSLG---SLPELPNLEFLSVAQNKLKSIA-------------MASQPRLQVLAASKNKIST 399 (428)
Q Consensus 339 ~~L~~L~~L~Ls~N~Lt~l~---~l~~L~~L~~L~Ls~N~L~~l~-------------l~~L~~L~~L~Ls~N~Lt~ 399 (428)
..+++|++|+|++|.|..++ .+..+++|++|+|.+|.|.+.. +..+++|+.|| +|.++.
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88999999999999999874 5889999999999999986651 67789999987 676665
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=3.2e-13 Score=143.77 Aligned_cols=144 Identities=20% Similarity=0.160 Sum_probs=117.3
Q ss_pred CCCCCCCceee-eCCCCceecccccc--------cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc-cc
Q 014262 245 LSGQRRAGTPQ-SKDSRFIVLPQVEI--------KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GI 314 (428)
Q Consensus 245 fs~l~~L~~L~-L~~n~L~~LP~~~~--------~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp-~l 314 (428)
|..+.+|+.|+ +..+.+..++.... ....|+.|+|++|.|.+++. |..+++|++|+|++|.|+.+| .|
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~ 482 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPAL 482 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGG
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhh
Confidence 34456677777 55555444432110 12368999999999999754 999999999999999999997 49
Q ss_pred cCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC--C-CCCCCCCCCEEEcCCCcCCccc------cCCCC
Q 014262 315 EILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--G-SLPELPNLEFLSVAQNKLKSIA------MASQP 385 (428)
Q Consensus 315 ~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~-~l~~L~~L~~L~Ls~N~L~~l~------l~~L~ 385 (428)
..+++|++|+|++|.|.+ +| .|..|++|+.|+|++|.|.++ + .|..+++|+.|+|++|.|.+++ +..++
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 999999999999999998 56 899999999999999999998 4 6889999999999999999874 23478
Q ss_pred CccEEEc
Q 014262 386 RLQVLAA 392 (428)
Q Consensus 386 ~L~~L~L 392 (428)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 9999875
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1e-12 Score=117.82 Aligned_cols=103 Identities=24% Similarity=0.340 Sum_probs=86.4
Q ss_pred ccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccC
Q 014262 274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAG 351 (428)
Q Consensus 274 L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~ 351 (428)
.+.|++++|.|..++.. + ..+|++|+|++|+|+.++ .|..+++|++|+|++|+|.++.+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 46889999999887654 3 378999999999999884 388899999999999999987777788999999999999
Q ss_pred CcCCCCC--CCCCCCCCCEEEcCCCcCCcc
Q 014262 352 NQITSLG--SLPELPNLEFLSVAQNKLKSI 379 (428)
Q Consensus 352 N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l 379 (428)
|+|..++ .|..+++|++|+|++|.|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999885 478889999999999987644
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=1.7e-12 Score=132.34 Aligned_cols=185 Identities=10% Similarity=0.121 Sum_probs=140.1
Q ss_pred cccCCCcccccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 230 LRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 230 L~L~~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
+.+.+ .+..+....|.++.+|+.+++.++.+..|+...|.+..|+.|.|. +.+..+....|.+|.+|+.|+|.+| ++
T Consensus 162 i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~ 238 (401)
T 4fdw_A 162 IVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VS 238 (401)
T ss_dssp EECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CC
T ss_pred EEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-cc
Confidence 34443 667788899999999999999999999999988888999999998 4488898899999999999999875 55
Q ss_pred CCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCC-----CC--CCCCCCCCCCEEEcCCCcCCcc-
Q 014262 310 TLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQIT-----SL--GSLPELPNLEFLSVAQNKLKSI- 379 (428)
Q Consensus 310 ~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt-----~l--~~l~~L~~L~~L~Ls~N~L~~l- 379 (428)
.++ .|.+ .+|+.|+| .+.+..+....|.+|.+|+.|+|.+|.+. .+ ..|.+|.+|+.|+|. +.++.+
T Consensus 239 ~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~ 315 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG 315 (401)
T ss_dssp EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC
T ss_pred Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh
Confidence 553 3555 67888888 44566666677888888888888777665 33 367778888888887 346666
Q ss_pred --ccCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCCCCc
Q 014262 380 --AMASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARICIA 422 (428)
Q Consensus 380 --~l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I~~~ 422 (428)
.|.++.+|+.|+|..| ++.+. .|.++ +|+.|+|.+|.+..+
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 3777778888888444 66654 57777 788888887775443
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.9e-12 Score=116.70 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=84.0
Q ss_pred cEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCC
Q 014262 275 VRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGN 352 (428)
Q Consensus 275 ~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N 352 (428)
+.+++++|.|..++.. + ..+|++|+|++|+|..++ .|..+++|++|+|++|+|.++.+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCC-c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 6788999998877653 3 378899999999998884 3788899999999999998876667788899999999999
Q ss_pred cCCCCC--CCCCCCCCCEEEcCCCcCCcc
Q 014262 353 QITSLG--SLPELPNLEFLSVAQNKLKSI 379 (428)
Q Consensus 353 ~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l 379 (428)
+|..++ .|..+++|++|+|++|.|...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 998885 378888899999999887754
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=3.1e-12 Score=126.32 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=90.6
Q ss_pred ceeeeCCC-CceecccccccCCCccEEEecC-CCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccC
Q 014262 252 GTPQSKDS-RFIVLPQVEIKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSF 327 (428)
Q Consensus 252 ~~L~L~~n-~L~~LP~~~~~l~~L~~LdLs~-N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~ 327 (428)
..++|.++ +|..||. +..+.+|++|+|++ |.|.++.+..|.+|.+|++|+|++|+|+.++ .|..|++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45789888 8999999 77888999999996 9999999888999999999999999999985 378899999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCCcCCCC
Q 014262 328 NDFKGPGFEPLENCKALQQLYLAGNQITSL 357 (428)
Q Consensus 328 N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l 357 (428)
|+|.++.+..|..+. |++|+|.+|.|...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999987666676666 99999999988753
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=7.3e-14 Score=141.12 Aligned_cols=124 Identities=21% Similarity=0.262 Sum_probs=52.4
Q ss_pred CCCcEEEccCCCCCCC--cc-ccCCCcccEEEccCCCCCCCCCCCC-----CCCCCCcEEEccCCcCCCCC------CCC
Q 014262 296 PNLEFVYLRDNMLSTL--EG-IEILTRVKVLDLSFNDFKGPGFEPL-----ENCKALQQLYLAGNQITSLG------SLP 361 (428)
Q Consensus 296 ~~L~~L~Ls~N~Ls~l--p~-l~~L~~L~~LdLs~N~L~~~~p~~l-----~~L~~L~~L~Ls~N~Lt~l~------~l~ 361 (428)
.+|++|+|++|.|... .. +..+.+|++|+|++|.|.......| ...++|++|+|++|.|+... .+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3455555555544432 11 1123344555555554443211111 12344555555555544321 223
Q ss_pred CCCCCCEEEcCCCcCCcc-------ccCCCCCccEEEccCCCCCCCC------CCCCCCCCcEEEccCCCC
Q 014262 362 ELPNLEFLSVAQNKLKSI-------AMASQPRLQVLAASKNKISTLK------GFPHLPLLEVSILCIARI 419 (428)
Q Consensus 362 ~L~~L~~L~Ls~N~L~~l-------~l~~L~~L~~L~Ls~N~Lt~lp------~l~~L~~L~~L~Ls~N~I 419 (428)
.+++|++|+|++|.|.+. .+..+..|+.|+|++|.|++.. .+..++.|++|+|++|.|
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 344455555555554432 1333444555555555554311 122334455555555544
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.8e-11 Score=120.88 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=90.4
Q ss_pred cEEEecCC-CcCccCccccCCCCCCcEEEccC-CCCCCCcc--ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 014262 275 VRLDLRGH-RVRSLIASGLNLQPNLEFVYLRD-NMLSTLEG--IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLA 350 (428)
Q Consensus 275 ~~LdLs~N-~i~~l~~~~l~~l~~L~~L~Ls~-N~Ls~lp~--l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls 350 (428)
..+++.++ +|..++. |..+.+|++|+|++ |.|..++. |..|.+|++|+|++|+|.++.+..|.+|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35788888 8998765 99999999999996 99999863 9999999999999999999889899999999999999
Q ss_pred CCcCCCCC--CCCCCCCCCEEEcCCCcCCcc
Q 014262 351 GNQITSLG--SLPELPNLEFLSVAQNKLKSI 379 (428)
Q Consensus 351 ~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l 379 (428)
+|+|..++ .|..+. |+.|+|.+|.|...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999995 345555 99999999998854
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.23 E-value=1e-10 Score=119.23 Aligned_cols=173 Identities=14% Similarity=0.108 Sum_probs=107.1
Q ss_pred ccccCCCCCCCCCCCceeeeCCCCceecccccc-cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--c
Q 014262 237 SSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--G 313 (428)
Q Consensus 237 i~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~-~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~ 313 (428)
+..|...+|.+. +|+.+.+.+ .+..|....| .+.+|+.|+|.+|.+..+....|. +.+|+.|.|..+ ++.++ .
T Consensus 146 i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~a 221 (401)
T 4fdw_A 146 LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQA 221 (401)
T ss_dssp CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTT
T ss_pred ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhH
Confidence 444555555553 455555553 4444544333 455566666666666655555555 355666666533 45443 3
Q ss_pred ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC--CCCCCCCCCCEEEcCCCcCC-----cc---ccCC
Q 014262 314 IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSL--GSLPELPNLEFLSVAQNKLK-----SI---AMAS 383 (428)
Q Consensus 314 l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l--~~l~~L~~L~~L~Ls~N~L~-----~l---~l~~ 383 (428)
|.++.+|+.|+|..| +..+....|.+ .+|+.+.| .+.+..+ ..|.+|.+|+.|+|.+|.+. .+ .|.+
T Consensus 222 F~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~ 298 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG 298 (401)
T ss_dssp TTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred hhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence 566666666666654 44444445555 56666666 3445555 36888888888888887665 33 4788
Q ss_pred CCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCC
Q 014262 384 QPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIA 417 (428)
Q Consensus 384 L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N 417 (428)
+.+|+.|+|. |.++.++ .|.+|.+|+.|+|..|
T Consensus 299 c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 299 CPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred CccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 8888988888 4577775 6888889999988655
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=4.9e-13 Score=135.09 Aligned_cols=172 Identities=16% Similarity=0.069 Sum_probs=123.1
Q ss_pred CCCceeeeCCCCceeccc-----ccc-cCCCccEEEecCCCcCccCcccc-CCCCCCcEEEccCCCCCCCc--cc-----
Q 014262 249 RRAGTPQSKDSRFIVLPQ-----VEI-KAGDDVRLDLRGHRVRSLIASGL-NLQPNLEFVYLRDNMLSTLE--GI----- 314 (428)
Q Consensus 249 ~~L~~L~L~~n~L~~LP~-----~~~-~l~~L~~LdLs~N~i~~l~~~~l-~~l~~L~~L~Ls~N~Ls~lp--~l----- 314 (428)
..++.|++.+|.+..... .+. ....|++|+|++|.|.......+ ..+.+|++|+|++|.|.... .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 468899999999874332 222 23699999999999976433333 34578999999999998742 12
Q ss_pred cCCCcccEEEccCCCCCCC----CCCCCCCCCCCcEEEccCCcCCCC------CCCCCCCCCCEEEcCCCcCCccc----
Q 014262 315 EILTRVKVLDLSFNDFKGP----GFEPLENCKALQQLYLAGNQITSL------GSLPELPNLEFLSVAQNKLKSIA---- 380 (428)
Q Consensus 315 ~~L~~L~~LdLs~N~L~~~----~p~~l~~L~~L~~L~Ls~N~Lt~l------~~l~~L~~L~~L~Ls~N~L~~l~---- 380 (428)
.....|++|+|++|.|... +...+..+++|++|+|++|.|.+. ..+..+.+|+.|+|++|.|.+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 3568999999999998752 333446788999999999999864 24667789999999999998752
Q ss_pred ---cCCCCCccEEEccCCCCCCCC-----CCCCCCC--CcEEE--ccCCCCC
Q 014262 381 ---MASQPRLQVLAASKNKISTLK-----GFPHLPL--LEVSI--LCIARIC 420 (428)
Q Consensus 381 ---l~~L~~L~~L~Ls~N~Lt~lp-----~l~~L~~--L~~L~--Ls~N~I~ 420 (428)
+..++.|++|+|++|.|++.. .+..... |+.+. +.+|.+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 456789999999999998731 2222222 66676 6666653
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.14 E-value=7.3e-12 Score=131.71 Aligned_cols=61 Identities=5% Similarity=-0.058 Sum_probs=28.4
Q ss_pred cCCCccEEEecCCCcCccC----ccccCCCCCCcEEEccCCCCCCCc-----c-ccCCCcccEEEccCCCC
Q 014262 270 KAGDDVRLDLRGHRVRSLI----ASGLNLQPNLEFVYLRDNMLSTLE-----G-IEILTRVKVLDLSFNDF 330 (428)
Q Consensus 270 ~l~~L~~LdLs~N~i~~l~----~~~l~~l~~L~~L~Ls~N~Ls~lp-----~-l~~L~~L~~LdLs~N~L 330 (428)
.+++|++|+|.+|.+.+.. ...+..+++|++|+|.+|.+..+. . +..+++|++|+|.+|.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 3455555555555544332 112334455555555555554221 1 23445555555555544
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.03 E-value=2.7e-11 Score=127.36 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=36.6
Q ss_pred CCCCCceeeeCCCCce-----ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEcc
Q 014262 247 GQRRAGTPQSKDSRFI-----VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLR 304 (428)
Q Consensus 247 ~l~~L~~L~L~~n~L~-----~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls 304 (428)
.+.+|+.|++.+|.+. .++..+..+++|+.|+|.+|.+.++. ..+..+++|++|++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhccc
Confidence 4567788888877775 33344446777888888887776643 345555666666655
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.96 E-value=4.1e-11 Score=125.85 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=40.1
Q ss_pred CCCCCEEEcCCCcCCccc----cCCCCCccEEEccCCCCCCC--C-CCCCCCCCcEEEccCCCC
Q 014262 363 LPNLEFLSVAQNKLKSIA----MASQPRLQVLAASKNKISTL--K-GFPHLPLLEVSILCIARI 419 (428)
Q Consensus 363 L~~L~~L~Ls~N~L~~l~----l~~L~~L~~L~Ls~N~Lt~l--p-~l~~L~~L~~L~Ls~N~I 419 (428)
+++|+.|+|++|.|++.. ...+++|+.|+|++|.+++. . .+..+++|++|+|++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 567777777777776542 25577888888888887542 2 344577888888888877
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.92 E-value=3.5e-11 Score=126.42 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=32.7
Q ss_pred CCCCCCEEEcCCCcCCccc----cCCCCCccEEEccCCCCCC--CCC-CCCCCCCcEEEcc
Q 014262 362 ELPNLEFLSVAQNKLKSIA----MASQPRLQVLAASKNKIST--LKG-FPHLPLLEVSILC 415 (428)
Q Consensus 362 ~L~~L~~L~Ls~N~L~~l~----l~~L~~L~~L~Ls~N~Lt~--lp~-l~~L~~L~~L~Ls 415 (428)
.+++|+.|+|.+|.+.... +..+++|+.|+|.+| +.+ ++. ...+++|++|+|.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 3567777777777766531 456777777777776 332 122 2246777777773
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=4.3e-10 Score=113.22 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=25.6
Q ss_pred CCCCCEEEcCCCcCCcc------ccCCCCCccEEEccCCCCCC-----CC-CCCCCCCCcEEEccCCCC
Q 014262 363 LPNLEFLSVAQNKLKSI------AMASQPRLQVLAASKNKIST-----LK-GFPHLPLLEVSILCIARI 419 (428)
Q Consensus 363 L~~L~~L~Ls~N~L~~l------~l~~L~~L~~L~Ls~N~Lt~-----lp-~l~~L~~L~~L~Ls~N~I 419 (428)
+++|++|+|.+|.+.+. ....+++|++|+|++|.|.+ +. .+.++++|+.|+|.+|.|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 44555555555544421 11234455555555555444 11 223344555555555544
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=8.9e-09 Score=93.43 Aligned_cols=39 Identities=10% Similarity=0.039 Sum_probs=16.5
Q ss_pred CCCccEEEecCC-CcCcc----CccccCCCCCCcEEEccCCCCC
Q 014262 271 AGDDVRLDLRGH-RVRSL----IASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 271 l~~L~~LdLs~N-~i~~l----~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
...|++|+|.+| .|... ....+...++|++|+|++|.|.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 344555555554 44421 1122333444444444444444
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=8.3e-09 Score=103.83 Aligned_cols=167 Identities=17% Similarity=0.076 Sum_probs=110.6
Q ss_pred CCCCCceeeeCCCCce----------ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCC--ccc
Q 014262 247 GQRRAGTPQSKDSRFI----------VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGI 314 (428)
Q Consensus 247 ~l~~L~~L~L~~n~L~----------~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~l--p~l 314 (428)
.+.+|+.|.+.+..+. .+...+..+++|+.|+|.+|.-..+.+ +. +++|++|+|..|.|..- ..+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHH
Confidence 3456666666544221 233444467899999999884222322 43 78999999999887653 223
Q ss_pred --cCCCcccEEEccC--CCCCCC-----CCCCC--CCCCCCcEEEccCCcCCCC-----CCCCCCCCCCEEEcCCCcCCc
Q 014262 315 --EILTRVKVLDLSF--NDFKGP-----GFEPL--ENCKALQQLYLAGNQITSL-----GSLPELPNLEFLSVAQNKLKS 378 (428)
Q Consensus 315 --~~L~~L~~LdLs~--N~L~~~-----~p~~l--~~L~~L~~L~Ls~N~Lt~l-----~~l~~L~~L~~L~Ls~N~L~~ 378 (428)
..+++|++|+|.. |...+. +...+ ..+++|++|+|.+|.|.+. .....+++|+.|+|++|.|.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 3689999999863 222111 11122 3578999999999988742 122467899999999999987
Q ss_pred c-------ccCCCCCccEEEccCCCCCCC--CCCCC-CCCCcEEEccCCC
Q 014262 379 I-------AMASQPRLQVLAASKNKISTL--KGFPH-LPLLEVSILCIAR 418 (428)
Q Consensus 379 l-------~l~~L~~L~~L~Ls~N~Lt~l--p~l~~-L~~L~~L~Ls~N~ 418 (428)
. .+..+++|+.|+|++|.|++. ..|.. + ...+++++|+
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 4 235679999999999998862 12222 2 4568888776
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=1e-08 Score=92.99 Aligned_cols=110 Identities=20% Similarity=0.151 Sum_probs=82.9
Q ss_pred ccccCCCCCCcEEEccCC-CCCCC------ccccCCCcccEEEccCCCCCCC----CCCCCCCCCCCcEEEccCCcCCCC
Q 014262 289 ASGLNLQPNLEFVYLRDN-MLSTL------EGIEILTRVKVLDLSFNDFKGP----GFEPLENCKALQQLYLAGNQITSL 357 (428)
Q Consensus 289 ~~~l~~l~~L~~L~Ls~N-~Ls~l------p~l~~L~~L~~LdLs~N~L~~~----~p~~l~~L~~L~~L~Ls~N~Lt~l 357 (428)
...+...+.|++|+|++| .|... ..+...+.|++|+|++|.|.+. +...+.....|++|+|++|.|...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 445677888999999998 88763 2356678899999999988752 233445567899999999988863
Q ss_pred ------CCCCCCCCCCEEEc--CCCcCCcc-------ccCCCCCccEEEccCCCCC
Q 014262 358 ------GSLPELPNLEFLSV--AQNKLKSI-------AMASQPRLQVLAASKNKIS 398 (428)
Q Consensus 358 ------~~l~~L~~L~~L~L--s~N~L~~l-------~l~~L~~L~~L~Ls~N~Lt 398 (428)
..+.....|++|+| ++|.|... .+.....|++|+|++|.|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 25667778999999 88888874 2555688999999998864
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.42 E-value=2.7e-06 Score=85.41 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=113.1
Q ss_pred ccCCCCCCCCCCCceeeeCCCCceecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCC-ccccCC
Q 014262 239 LDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEIL 317 (428)
Q Consensus 239 ~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~l-p~l~~L 317 (428)
.+....|.++..|+.+.+.++. ..+....+....|+.+.+. +.+..+....|.++..|+.+.+..+...-. ..|..+
T Consensus 198 ~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip-~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~ 275 (394)
T 4fs7_A 198 IIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGVKNIIIP-DSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNC 275 (394)
T ss_dssp EECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEEC-TTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTC
T ss_pred EeCchhhccccccceeecCCCc-eEeehhhcccCCCceEEEC-CCceecccccccccccceeEEcCCCcceeeccccccc
Confidence 3344444444444444443332 2233333344556666654 334555556677778888888876643322 246777
Q ss_pred CcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCcc---ccCCCCCccEEEc
Q 014262 318 TRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSI---AMASQPRLQVLAA 392 (428)
Q Consensus 318 ~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L~L 392 (428)
..|+.+.+..+.+.. ..|..+.+|+.+.+..+ +..++ .|.++.+|+.++|.++ ++.+ .|.++.+|+.++|
T Consensus 276 ~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 276 SGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECC
T ss_pred cccceeccCceeecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEE
Confidence 788887776665432 46778888999988754 66663 6888999999999654 6666 4888899999999
Q ss_pred cCCCCCCCC--CCCCCCCCcEEEccCC
Q 014262 393 SKNKISTLK--GFPHLPLLEVSILCIA 417 (428)
Q Consensus 393 s~N~Lt~lp--~l~~L~~L~~L~Ls~N 417 (428)
..| ++.+. .|.+|.+|+.++|..+
T Consensus 351 p~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 351 PLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred Ccc-ccEehHHHhhCCCCCCEEEECCC
Confidence 776 77775 6889999999998765
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.37 E-value=2.2e-06 Score=86.08 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=74.4
Q ss_pred ccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCcc---ccCCCCCcc
Q 014262 314 IEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSI---AMASQPRLQ 388 (428)
Q Consensus 314 l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~ 388 (428)
|..+..|+.+.+.++.. .+....|.++..|+.+.+. +.+..++ .|.++.+|+.++|..+ ++.+ .|.++.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 66778888888866543 3345677888888888885 4566663 6888888888888754 5555 488888888
Q ss_pred EEEccCCCCCCCC--CCCCCCCCcEEEccCCC
Q 014262 389 VLAASKNKISTLK--GFPHLPLLEVSILCIAR 418 (428)
Q Consensus 389 ~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~ 418 (428)
.|.|-.+ ++.+. .|.+|.+|+.+++.+|.
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 8888544 77775 58888888888888765
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=5.4e-08 Score=93.99 Aligned_cols=75 Identities=29% Similarity=0.441 Sum_probs=40.3
Q ss_pred CCCCCcEEEccCCCCCCCccc----cCCCcccEEEccCCCCCCCCCCCCCCCC--CCcEEEccCCcCCC-CC--------
Q 014262 294 LQPNLEFVYLRDNMLSTLEGI----EILTRVKVLDLSFNDFKGPGFEPLENCK--ALQQLYLAGNQITS-LG-------- 358 (428)
Q Consensus 294 ~l~~L~~L~Ls~N~Ls~lp~l----~~L~~L~~LdLs~N~L~~~~p~~l~~L~--~L~~L~Ls~N~Lt~-l~-------- 358 (428)
++++|+.|+|++|+|..++.+ ..+++|++|+|++|+|.+. ..+..+. +|++|+|.+|.|.. ++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 455666666666666655432 3566666666666666553 1222222 66666666666653 11
Q ss_pred CCCCCCCCCEEE
Q 014262 359 SLPELPNLEFLS 370 (428)
Q Consensus 359 ~l~~L~~L~~L~ 370 (428)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 234556666654
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.32 E-value=4.6e-06 Score=83.76 Aligned_cols=174 Identities=12% Similarity=0.072 Sum_probs=105.3
Q ss_pred cccCCCCCCCCCCCceeeeCCCCceecccccc-cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc----
Q 014262 238 SLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE---- 312 (428)
Q Consensus 238 ~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~-~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp---- 312 (428)
..+....|.++.+|+.+.+.++ +..++...+ .+..|+.++|..+ +..+....|.++..|+.+.+..+....-.
T Consensus 151 ~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~ 228 (394)
T 4fs7_A 151 TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALS 228 (394)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTT
T ss_pred cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcc
Confidence 3445566777777777777544 344554443 5567777777654 55566666666666666655543221111
Q ss_pred -------------------cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCCCEEEcCC
Q 014262 313 -------------------GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLGSLPELPNLEFLSVAQ 373 (428)
Q Consensus 313 -------------------~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~~L~~L~Ls~ 373 (428)
.+..+..|+.+.+..+.. .+....|.++..|+.+.+..+.+.. ..|..+.+|+.+.+.+
T Consensus 229 ~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLD 306 (394)
T ss_dssp TCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECT
T ss_pred cCCCceEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecc-cccccccccccccccc
Confidence 133444444444444322 1233344555555555554433221 3567788888888865
Q ss_pred CcCCcc---ccCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCC
Q 014262 374 NKLKSI---AMASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIA 417 (428)
Q Consensus 374 N~L~~l---~l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N 417 (428)
+ ++.+ .|.++.+|+.++|.++ ++.|. .|.+|.+|+.++|..|
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 5 5555 4888899999999654 77775 6889999999998766
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=2.5e-08 Score=96.38 Aligned_cols=62 Identities=26% Similarity=0.250 Sum_probs=30.7
Q ss_pred CCCcccEEEccCCCCCCC--CCCCCCCCCCCcEEEccCCcCCCCCCCCCCC--CCCEEEcCCCcCC
Q 014262 316 ILTRVKVLDLSFNDFKGP--GFEPLENCKALQQLYLAGNQITSLGSLPELP--NLEFLSVAQNKLK 377 (428)
Q Consensus 316 ~L~~L~~LdLs~N~L~~~--~p~~l~~L~~L~~L~Ls~N~Lt~l~~l~~L~--~L~~L~Ls~N~L~ 377 (428)
.+++|+.|+|++|+|.++ ++..+..+++|+.|+|++|.|.++..+..+. +|+.|+|.+|.|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 455566666666665552 2233345555555555555555543222222 4555555555544
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.16 E-value=1.8e-05 Score=78.58 Aligned_cols=25 Identities=4% Similarity=-0.137 Sum_probs=15.5
Q ss_pred cccccCCCCCCCCCCCceeeeCCCC
Q 014262 236 SSSLDRSSNLSGQRRAGTPQSKDSR 260 (428)
Q Consensus 236 si~~l~~~~fs~l~~L~~L~L~~n~ 260 (428)
.+..+....|.+...+..+.+..+.
T Consensus 145 ~v~~i~~~~f~~~~~l~~~~~~~~~ 169 (379)
T 4h09_A 145 SVTTIKDGIGYKAENLEKIEVSSNN 169 (379)
T ss_dssp TCCEECSCTTTTCTTCCEEEECTTC
T ss_pred eeeccccchhccccccccccccccc
Confidence 3455566677777777766665443
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.13 E-value=5.9e-06 Score=82.97 Aligned_cols=133 Identities=12% Similarity=0.165 Sum_probs=80.9
Q ss_pred ceecccccc-cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCCCCCCC
Q 014262 261 FIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKGPGFEP 337 (428)
Q Consensus 261 L~~LP~~~~-~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~ 337 (428)
+..+....| .+..|+.+.|..+ +..+....|.++..|+.+.+. +.++.++ .|.++.+|+.++|..+ ++.+....
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 344433333 5567777777543 445666667777888888775 4456554 3777788888888654 55555667
Q ss_pred CCCCCCCcEEEccCCcCCCCC--CCCCCCCCCEEEcCCCcCCccccCCCCCccEEEccCCCC
Q 014262 338 LENCKALQQLYLAGNQITSLG--SLPELPNLEFLSVAQNKLKSIAMASQPRLQVLAASKNKI 397 (428)
Q Consensus 338 l~~L~~L~~L~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l~l~~L~~L~~L~Ls~N~L 397 (428)
|.+|.+|+.+.|-.+ ++.++ .|.+|.+|+.+++.+|....-.+.....|+.|.+..|.+
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 788888888888543 66663 677888888888877654333456667777777766543
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=2.4e-05 Score=77.74 Aligned_cols=126 Identities=16% Similarity=0.235 Sum_probs=70.8
Q ss_pred cCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccCCCCCCCCCCCCCCCCCCcEE
Q 014262 270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSFNDFKGPGFEPLENCKALQQL 347 (428)
Q Consensus 270 ~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L 347 (428)
.+..|+.+.+..+ +..+....|.++..|+.+.|..+ ++.+. .|.++..|+.+.+..+ +..+....|.+|.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 4455666655432 44555555666666666666554 44442 3555666666666433 443344456666666666
Q ss_pred EccCCcCCCCC--CCCCCCCCCEEEcCCCcCCcc---ccCCCCCccEEEccCCCCCCC
Q 014262 348 YLAGNQITSLG--SLPELPNLEFLSVAQNKLKSI---AMASQPRLQVLAASKNKISTL 400 (428)
Q Consensus 348 ~Ls~N~Lt~l~--~l~~L~~L~~L~Ls~N~L~~l---~l~~L~~L~~L~Ls~N~Lt~l 400 (428)
.|.++.++.++ .|.++.+|+.+.|..+ ++.+ .|.++.+|+.+.|..+ ++.|
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 66666666553 5666666666666543 4444 3666666666666433 4444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=4.1e-06 Score=75.82 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=55.4
Q ss_pred ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCC-CCCC--ccccCC----CcccEEEccCCC-CCCCC
Q 014262 263 VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LSTL--EGIEIL----TRVKVLDLSFND-FKGPG 334 (428)
Q Consensus 263 ~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~-Ls~l--p~l~~L----~~L~~LdLs~N~-L~~~~ 334 (428)
.+|......-.|++|||+++.|+...-..+..+++|++|+|.+|. |++. ..+..+ +.|++|+|++|. |++..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 345433334467888888888776655556777888888888874 5542 234432 357777777764 65533
Q ss_pred CCCCCCCCCCcEEEccCC
Q 014262 335 FEPLENCKALQQLYLAGN 352 (428)
Q Consensus 335 p~~l~~L~~L~~L~Ls~N 352 (428)
...+..+++|++|+|.++
T Consensus 132 l~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HHHGGGCTTCCEEEEESC
T ss_pred HHHHhcCCCCCEEECCCC
Confidence 344555666666666655
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=7.2e-06 Score=74.20 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=54.6
Q ss_pred CcccEEEccCCCCCCCCCCCCCCCCCCcEEEccCCc-CCCC--CCCCCC----CCCCEEEcCCC-cCCcc---ccCCCCC
Q 014262 318 TRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQ-ITSL--GSLPEL----PNLEFLSVAQN-KLKSI---AMASQPR 386 (428)
Q Consensus 318 ~~L~~LdLs~N~L~~~~p~~l~~L~~L~~L~Ls~N~-Lt~l--~~l~~L----~~L~~L~Ls~N-~L~~l---~l~~L~~ 386 (428)
.+|++|||+++.|++.....+..|++|++|+|++|. |++. ..+..+ ++|++|+|++| +|++. .+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888776655666777888888888774 5543 233332 36777777776 36664 3556777
Q ss_pred ccEEEccCCC-CCC
Q 014262 387 LQVLAASKNK-IST 399 (428)
Q Consensus 387 L~~L~Ls~N~-Lt~ 399 (428)
|++|+|.++. |++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 7777777764 554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.59 E-value=7.9e-05 Score=63.72 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=35.3
Q ss_pred EEEcCCCcCC--ccccCCCCCccEEEccCCCCCCCC--CCCCCCCCcEEEccCCCC-CCccc
Q 014262 368 FLSVAQNKLK--SIAMASQPRLQVLAASKNKISTLK--GFPHLPLLEVSILCIARI-CIAHL 424 (428)
Q Consensus 368 ~L~Ls~N~L~--~l~l~~L~~L~~L~Ls~N~Lt~lp--~l~~L~~L~~L~Ls~N~I-~~~~l 424 (428)
.++.+++.|+ .+|-.-..+|++|+|++|+|+.++ .|..+++|++|+|.+|+| |+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 5555666665 555444445666677777766665 356666777777777776 55554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.58 E-value=6.7e-05 Score=64.18 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=49.2
Q ss_pred ceeeeCCCCce--ecccccccCCCccEEEecCCCcCccCccccCCCCCCcEEEccCCCCC
Q 014262 252 GTPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (428)
Q Consensus 252 ~~L~L~~n~L~--~LP~~~~~l~~L~~LdLs~N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls 309 (428)
..++|.+++|+ .||..+ ..+|++|+|++|+|+.+....|..+++|++|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999998 999876 678999999999999998888888999999999998765
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=3.8e-05 Score=70.70 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=6.4
Q ss_pred CCcccEEEccCCCCC
Q 014262 317 LTRVKVLDLSFNDFK 331 (428)
Q Consensus 317 L~~L~~LdLs~N~L~ 331 (428)
-..|++|+|.+|.|.
T Consensus 69 N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 69 SKHIEKFSLANTAIS 83 (197)
T ss_dssp CSCCCEEECTTSCCB
T ss_pred CCCcCEEEccCCCCC
Confidence 334444444444443
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.35 E-value=3.6e-05 Score=70.82 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=68.4
Q ss_pred cCCCccEEEecCC-CcCcc----CccccCCCCCCcEEEccCCCCCCC------ccccCCCcccEEEccCCCCCCC----C
Q 014262 270 KAGDDVRLDLRGH-RVRSL----IASGLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFKGP----G 334 (428)
Q Consensus 270 ~l~~L~~LdLs~N-~i~~l----~~~~l~~l~~L~~L~Ls~N~Ls~l------p~l~~L~~L~~LdLs~N~L~~~----~ 334 (428)
....|++|+|.+| +|... ....+..-..|++|+|.+|+|... ..+..-..|++|+|++|.|.+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4578999999885 77642 334566678999999999998864 1245667888888888888752 2
Q ss_pred CCCCCCCCCCcEEEccCCcCCCCC---------CCCCCCCCCEEEcCCCc
Q 014262 335 FEPLENCKALQQLYLAGNQITSLG---------SLPELPNLEFLSVAQNK 375 (428)
Q Consensus 335 p~~l~~L~~L~~L~Ls~N~Lt~l~---------~l~~L~~L~~L~Ls~N~ 375 (428)
.+.+..-..|++|+|.+|....+. .+..-+.|..|+|.+|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 234445556777777654331111 23334556666665554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.59 E-value=11 Score=30.07 Aligned_cols=45 Identities=16% Similarity=-0.004 Sum_probs=22.2
Q ss_pred CCcCccCccccCCCCCCcEEEccCCCCCCCc--cccCCCcccEEEccC
Q 014262 282 HRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDLSF 327 (428)
Q Consensus 282 N~i~~l~~~~l~~l~~L~~L~Ls~N~Ls~lp--~l~~L~~L~~LdLs~ 327 (428)
..++.+....|.+|..|+.+.|-.+ ++.|. .|.+|.+|+.+.|..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3445555555555555555555543 33332 255555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.93 E-value=23 Score=27.99 Aligned_cols=47 Identities=13% Similarity=-0.045 Sum_probs=24.8
Q ss_pred CCcccccCCCCCCCCCCCceeeeCCCCceecccccc-cCCCccEEEecC
Q 014262 234 SLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRG 281 (428)
Q Consensus 234 ~~si~~l~~~~fs~l~~L~~L~L~~n~L~~LP~~~~-~l~~L~~LdLs~ 281 (428)
+..+..|....|.++..|+.+.+-.+ ++.|....| .+..|+.+.|.+
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44566667777777777766665432 333333222 344454444443
No 167
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=23.40 E-value=1.8e+02 Score=24.90 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=7.7
Q ss_pred CCcEEEccCCCCCCC
Q 014262 297 NLEFVYLRDNMLSTL 311 (428)
Q Consensus 297 ~L~~L~Ls~N~Ls~l 311 (428)
.|+.-++.++.+.+.
T Consensus 70 ~l~~~~f~~~~l~~a 84 (200)
T 2xt2_A 70 SFMEVRFVDCKMLGV 84 (200)
T ss_dssp EEEEEEEESCBCTTC
T ss_pred eeeeeEEEcCEecCC
Confidence 344555555555543
Done!