BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014264
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
pdb|3LZC|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
pdb|3LZD|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
4fe-4s Cluster
pdb|3LZD|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
4fe-4s Cluster
Length = 378
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 47/300 (15%)
Query: 3 DTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHA 62
+ YG+C + A V D +IH GH+ + +P FV A ++ ++
Sbjct: 89 EINYGACDPADREAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVVEALKENIGEI 148
Query: 63 LTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSL 122
G+ I+V ++ H + +E ++ G ++ I D S
Sbjct: 149 KKLGRKIIVTTTAQHIHQLKEAKEFLE------SEGFEVSIGRGDSRI----------SW 192
Query: 123 CGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEE 182
G GC N K E +LF IGS F + L AT +
Sbjct: 193 PGQVLGC----------NYSVAKVRGEGILF-IGS--GIFHPLGLAV---------ATRK 230
Query: 183 RLLT--------DVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELI 234
++L P + +++R+ + KA DA GV+V L ++ +L+
Sbjct: 231 KVLAIDPYTKAFSWIDPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLL 290
Query: 235 TKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFG 294
K G++A +VM N KL FP + ++ V+C + L D + PV+TP E + G
Sbjct: 291 KKHGREARLIVMNDVNYHKLEGFP-FEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLG 349
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 253 KLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMS 312
K+A+F C I + +++AP I ++ +G+ W V+ + L
Sbjct: 161 KIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQP---YGKSVDWWAFGVLLYEMLAG 217
Query: 313 SSPVEGSDQAE 323
+P EG D+ E
Sbjct: 218 QAPFEGEDEDE 228
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 253 KLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMS 312
K+A+F C I + +++AP I ++ +G+ W V+ + L
Sbjct: 482 KIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQP---YGKSVDWWAFGVLLYEMLAG 538
Query: 313 SSPVEGSDQAE 323
+P EG D+ E
Sbjct: 539 QAPFEGEDEDE 549
>pdb|1Z3G|L Chain L, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|M Chain M, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 213
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 70 LVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTV--ITPSKDHKSLCGPAG 127
L + G+E A + + ++GSG KLEIN AD TV PS + + G +
Sbjct: 72 LTISGMEAEDAATYYCQQWSSNPPTFGSGTKLEINRADTAPTVSIFPPSSEQLTSGGASV 131
Query: 128 GCTRHTIG----GLVWNIPDRKKMEEHLLFWIGSD--NSAFA-NVVLTFNGCEIVRYDA 179
C + + W I ++ L W D +S ++ + LT E R+++
Sbjct: 132 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS 190
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 176 RYDATEERLLTDVSQPLKILKRRYY--LVEKAKDANIIGVLVGTLG 219
RY++T RL TDVSQ +K L R Y ++ A+I + T G
Sbjct: 239 RYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRG 284
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 176 RYDATEERLLTDVSQPLKILKRRYY--LVEKAKDANIIGVLVGTLG 219
RY++T RL TDVSQ +K L R Y ++ A+I + T G
Sbjct: 239 RYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRG 284
>pdb|1SY6|L Chain L, Crystal Structure Of Cd3gammaepsilon Heterodimer In
Complex With Okt3 Fab Fragment
Length = 213
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 70 LVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTV--ITPSKDHKSLCGPAG 127
L + G+E A + + ++GSG KLEIN AD TV PS + + G +
Sbjct: 72 LTISGMEAEDAATYYCQQWSSNPFTFGSGTKLEINRADTAPTVSIFPPSSEQLTSGGASV 131
Query: 128 GCTRHTIG----GLVWNIPDRKKMEEHLLFWIGSD--NSAFA-NVVLTFNGCEIVRYDA 179
C + + W I ++ L W D +S ++ + LT E R+++
Sbjct: 132 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS 190
>pdb|3PG5|A Chain A, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|B Chain B, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|C Chain C, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|D Chain D, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
Length = 361
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 270 QTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVE 317
+T LL F+ P T + AFG +W A+V ++ ++ + E
Sbjct: 170 RTVLLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNXAE 217
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 253 KLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMS 312
K+A+F C + + +++AP I ++ +G+ W V+ + L
Sbjct: 160 KIADFGMCKEHMMDGVTTREFCGTPDYIAPEIIAYQP---YGKSVDWWAYGVLLYEMLAG 216
Query: 313 SSPVEGSDQAE 323
P +G D+ E
Sbjct: 217 QPPFDGEDEDE 227
>pdb|2YCI|X Chain X, Methyltransferase Native
pdb|2YCJ|A Chain A, Methyltransferase Bound With Methyltetrahydrofolate
Length = 271
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 9 CCVDEVGASHVDADCVIHYGHTCLSPTST----LPAFFVFGK----ASINTSNCIENLSK 60
CC+D ++A +H GH ++ TS + FF K A I + + + K
Sbjct: 81 CCLDSTNPDAIEAGLKVHRGHAMINSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPK 140
Query: 61 HALTNGKPILVLYGLEYAHAIP 82
A + + L AH IP
Sbjct: 141 DANDRSQLAMELVANADAHGIP 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,574,477
Number of Sequences: 62578
Number of extensions: 505203
Number of successful extensions: 1501
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1495
Number of HSP's gapped (non-prelim): 12
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)