Query 014265
Match_columns 427
No_of_seqs 128 out of 1684
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 08:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 8.9E-44 3E-48 358.4 27.7 362 26-426 80-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 4.6E-27 1.6E-31 233.3 23.9 335 26-410 87-434 (451)
3 3o7q_A L-fucose-proton symport 99.9 4E-24 1.4E-28 211.4 31.7 306 26-402 86-425 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 4.4E-23 1.5E-27 207.3 21.4 360 26-417 79-479 (491)
5 2gfp_A EMRD, multidrug resista 99.8 6.1E-22 2.1E-26 192.0 7.8 119 26-144 60-180 (375)
6 2cfq_A Lactose permease; trans 99.8 1.2E-20 4.1E-25 186.0 15.7 335 26-420 68-410 (417)
7 2xut_A Proton/peptide symporte 99.8 5.9E-20 2E-24 186.1 15.5 111 26-136 79-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.3E-10 4.5E-15 114.5 19.9 140 276-415 68-212 (451)
9 3o7q_A L-fucose-proton symport 99.2 3.5E-09 1.2E-13 103.9 22.0 108 276-383 67-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.1 2E-09 6.8E-14 107.5 19.9 137 276-412 60-199 (491)
11 2gfp_A EMRD, multidrug resista 99.0 2.1E-09 7.1E-14 103.4 13.9 142 276-417 41-182 (375)
12 2xut_A Proton/peptide symporte 99.0 1.7E-08 6E-13 101.5 17.8 135 277-411 61-200 (524)
13 4gc0_A D-xylose-proton symport 98.6 9.3E-07 3.2E-11 87.9 16.3 104 280-383 65-186 (491)
14 2cfq_A Lactose permease; trans 98.3 2.8E-07 9.7E-12 90.1 4.8 117 26-142 284-403 (417)
15 2g9p_A Antimicrobial peptide l 20.1 68 0.0023 16.4 1.8 13 290-302 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=8.9e-44 Score=358.44 Aligned_cols=362 Identities=20% Similarity=0.217 Sum_probs=256.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc------------------cchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCC
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSF------------------SPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSN 86 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~------------------a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~ 86 (427)
||+|||++++++++++.++++++++ ++|+.+++++|+++|++.|+.. +...|+.|++|+++
T Consensus 80 Dr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~ 159 (491)
T 4gc0_A 80 NRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI 159 (491)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh
Confidence 5999999999999999999999984 7899999999999999999975 56788999999999
Q ss_pred chhHHHHHHHHHHHhHhHHHHHHHHhc--------CCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHH
Q 014265 87 RGMWMVIFSSFWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRA 158 (427)
Q Consensus 87 Rg~~~~~~~~~~~iG~i~~~~~~~~~~--------~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~ 158 (427)
||+..++.+.++.+|.+.+..+++... ..+.||+++.+..+++++..+.++++|||||||..|+|.||+++.
T Consensus 160 rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~ 239 (491)
T 4gc0_A 160 RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGI 239 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHH
T ss_pred hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHh
Confidence 999999999999999998887776643 235699999999999999888889999999999999999999999
Q ss_pred HHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHH
Q 014265 159 LEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSF 238 (427)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (427)
+++..+.+..+. +.. +..+...+ .++ ......+++ .++..+.....++.+..
T Consensus 240 l~~~~~~~~~~~---~~~--------------~~~~~~~~-----~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~ 291 (491)
T 4gc0_A 240 LRKIMGNTLATQ---AVQ--------------EIKHSLDH-----GRK----TGGRLLMFG--VGVIVIGVMLSIFQQFV 291 (491)
T ss_dssp HHHHHHHHHHHH---HHH--------------HHHHHHHH-----HHH----HTTHHHHSC--CTHHHHHHHHHHHHHHT
T ss_pred HHHhcCCchhHH---HHH--------------HHHHHHHh-----hhh----hhhHHHHhc--ccHHHHHHHHHHHHHHh
Confidence 988765432110 000 00000000 000 001111222 22222233333344444
Q ss_pred HHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 014265 239 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV 318 (427)
Q Consensus 239 ~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~ 318 (427)
.++.+..+.+.+.... ............+.++..+++.+++++++||+|||+.+..+...+.++.+.+.
T Consensus 292 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp CHHHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 4444444545443211 11222334455666778888999999999999999998877766555544433
Q ss_pred h--h-c-hhhHHHHHHHH-HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh------cc
Q 014265 319 T--Y-Q-SNILTTGLLFG-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN------CH 387 (427)
Q Consensus 319 ~--~-~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~------~~ 387 (427)
. . . +.......... ...+..+..++.+.+++|+||+++|+++.|+++++++++++++|++.|.+.+. .+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~ 440 (491)
T 4gc0_A 361 TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH 440 (491)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 1 1 12222222222 12223334467899999999999999999999999999999999988876543 12
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCccCCccccccccccC
Q 014265 388 QMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTS 426 (427)
Q Consensus 388 ~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~l~e~~~~~~ 426 (427)
...++++++++++++.++++++.||||||++||+++..|
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 335678889999999888888889999999999776544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=4.6e-27 Score=233.32 Aligned_cols=335 Identities=13% Similarity=0.142 Sum_probs=221.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSF----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~----a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+.++++.++.+++.++.++ ++|+++++++|+++|++.|.. +...+++.|++|+++|+++.++.+....+
T Consensus 87 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 87 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 166 (451)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH
Confidence 5999999999999999999999999 999999999999999999876 45678899999999999999999999999
Q ss_pred hHhHHHHHHHHhcCCCC-chHHHHhhhHHHHHHH-HHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 101 GSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~i~~~~~~~~~~~~~~-WR~~~~~~~i~~li~~-~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|.++++.++..+....+ ||+.|++.++..++.. +..+.+||+|+....+.+.++ +++
T Consensus 167 g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--------- 225 (451)
T 1pw4_A 167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY------------KND--------- 225 (451)
T ss_dssp HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT------------CCC---------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh------------ccc---------
Confidence 99999888876556677 9999998887776644 445678999875321111000 000
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
.+. +. ++ ++++....++ ...+.+++++ +.+......+.....+++...+.|.+....
T Consensus 226 ~~~---------~~----~~-~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 282 (451)
T 1pw4_A 226 YPD---------DY----NE-KAEQELTAKQ--IFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEV---- 282 (451)
T ss_dssp ---------------------------CCTH--HHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----
T ss_pred ccc---------cc----hh-hhhccccccc--chHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 000 00 00 0000000000 1123334322 222333333444555666666666554210
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHHHHHHHH-HHHHHHHhhc--hhhHHHHHHHHH
Q 014265 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTYQ--SNILTTGLLFGA 333 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~--GRr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~ 333 (427)
.+.+.........+..++.+++.++.+.+.||+ |||+.+..+..+.. +..+.+.... +.+......+..
T Consensus 283 ------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (451)
T 1pw4_A 283 ------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 356 (451)
T ss_dssp ------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred ------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 111222222334455667788889999999999 99998876655443 3333222221 222222223333
Q ss_pred HHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhH-hHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014265 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
.++..+.....+.+..|.+|++.|+++.|+.+.+.++ ++.++|.+.+.+.+..+....+.+++++.+++.++..++.
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566788999999999999999999999999 9999999999888876655667777777777766665554
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=4e-24 Score=211.44 Aligned_cols=306 Identities=11% Similarity=-0.011 Sum_probs=203.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLS---SFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~---~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||+.++++.++.+++.++. ++++|+++++++|++.|++.|... ...+++.|+.|+++|++..++.+....+|
T Consensus 86 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 165 (438)
T 3o7q_A 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 59999999999999999999999 899999999999999999998864 56788999999999999999999999999
Q ss_pred HhHHHHHHHHhc-CCCC-------------------------chHHHHhhhHHHHHHHHHh--hcccCchhHHhhcCchH
Q 014265 102 SVSEAIGAWIIM-PRLD-------------------------WRWLLGLSSIPSFILLAFL--GFQPESPRYLCLKGRTA 153 (427)
Q Consensus 102 ~i~~~~~~~~~~-~~~~-------------------------WR~~~~~~~i~~li~~~~~--~~lpESP~~L~~~gr~~ 153 (427)
.++++.++..+. ...+ ||+.+++.++..++..+.. ...||+++.. +
T Consensus 166 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~-- 239 (438)
T 3o7q_A 166 AIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN----H-- 239 (438)
T ss_dssp HHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC----C--
T ss_pred HHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc----c--
Confidence 999998877665 4443 9999977766655443332 2346654310 0
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHH
Q 014265 154 EAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 233 (427)
Q Consensus 154 ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (427)
+ ++ + .......++++++.+......+. .
T Consensus 240 ---------------~--------------~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~---~ 267 (438)
T 3o7q_A 240 ---------------S--------------DA-K-------------------QGSFSASLSRLARIRHWRWAVLA---Q 267 (438)
T ss_dssp ---------------C--------------CS-S-------------------TTSHHHHHHHHTTCSHHHHHHHH---H
T ss_pred ---------------c--------------cc-c-------------------ccchhhhHHHHHhChHHHHHHHH---H
Confidence 0 00 0 00011244455554333322222 2
Q ss_pred HHHHHHHHHHHHHHHHh-hcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHH
Q 014265 234 FGNSFAYYAVVLLISEL-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL 312 (427)
Q Consensus 234 ~~~~~~~y~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~ 312 (427)
+.....+++...+.+.+ .... .+.+.........+..+..+++.++.+++.||+|||+.+..+..+..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22233334444444443 2110 011111222334445667788889999999999999998887766655
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-hhHH
Q 014265 313 FLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTA 391 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-~~~~ 391 (427)
..+......+... ........++....++..+.+..|.+|++ |+++.++.. ++.+++.++|.+.+.+.+..+ ....
T Consensus 338 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 338 LCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp HHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred HHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 5544443333322 22223333444455677889999999988 999999887 788999999999998887765 4445
Q ss_pred HHHHHHHHHHH
Q 014265 392 VVLLVVVIVTS 402 (427)
Q Consensus 392 ~~~~~~~~~i~ 402 (427)
+.+.+++.++.
T Consensus 415 ~~~~~~~~~~~ 425 (438)
T 3o7q_A 415 ELIPALCFAVI 425 (438)
T ss_dssp GHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.91 E-value=4.4e-23 Score=207.32 Aligned_cols=360 Identities=11% Similarity=-0.011 Sum_probs=191.6
Q ss_pred hh-ccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCC--chhHHHHHHHHHHHh
Q 014265 26 WQ-NLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~-~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG 101 (427)
|| +|||+++..+.++..++.++.++++|+++++++|++.|++.|.. +...+++.|++|+++ |+...+..+....+|
T Consensus 79 dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 79 DRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHH
Confidence 59 79999999999999999999999999999999999999999876 456788899999998 677778888999999
Q ss_pred HhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhc-----ccCchhHHhhcCchHHHHHHHHH--------------H
Q 014265 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF-----QPESPRYLCLKGRTAEAHRALEK--------------I 162 (427)
Q Consensus 102 ~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~-----lpESP~~L~~~gr~~ea~~~l~~--------------~ 162 (427)
..+++.++..+....+||+.|++.++..++..+.... .++..+--..+.+.+|.++..++ +
T Consensus 159 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 238 (491)
T 4aps_A 159 AFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVM 238 (491)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887777789999999887665544333221 11111100111123333333322 0
Q ss_pred hhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHH----HHHHHHH
Q 014265 163 AQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL----LLFGNSF 238 (427)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~ 238 (427)
...++.+.+ +....... . ... ..........+. + .. . ...+++.. .....+. .+.....
T Consensus 239 ~~~~~~~~~--~~~~~~~~-~-~~~--~~~~~~~~~~~~-~-~~------~--~~~~~~~~-~~~~~~~~~~~~~~~~~~ 301 (491)
T 4aps_A 239 NLVGWNSLP--AYINLLTI-V-AIA--IPVFYFAWMISS-V-KV------T--STEHLRVV-SYIPLFIAAVLFWAIEEQ 301 (491)
T ss_dssp HHHSSCCTT--HHHHHHHH-H-HHH--HHHHHHHHHC----------------------CT-THHHHHHHHHHHHHHHGG
T ss_pred HhccCcccc--cchhhhhH-H-HHH--HHHHHHHHHhhc-c-cc------c--HHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 111110000 00000000 0 000 000000000000 0 00 0 00001111 1111111 1111111
Q ss_pred HHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHH-----HHHHHHHHH
Q 014265 239 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT-----IMFTLSCLF 313 (427)
Q Consensus 239 ~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~-----~~~~~~~~~ 313 (427)
.......+..+.... .....+ .......+...++..+.+.+.||+|||+... .+..+.++.
T Consensus 302 ~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 302 GSVVLATFAAERVDS------------SWFPVS--WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp GGTHHHHHHHHSCCC------------SSSCSG--GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcc------------CccCHH--HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 111111111211100 000111 1112233445566777889999999986543 333333333
Q ss_pred HHHHHhhc---------hhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHh
Q 014265 314 LLPLVTYQ---------SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 314 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~ 384 (427)
...+.... +.+..........++........+.+..|.+|++.|+++.|+.+...++|++++|.+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222211 112222222222222233345678999999999999999999999999999999999876544
Q ss_pred hcchhHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 385 NCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
. +....+.+++.+++++.+..+++.|+++++.
T Consensus 448 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 448 K-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp S-STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3445677777777777777777777776654
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.85 E-value=6.1e-22 Score=191.97 Aligned_cols=119 Identities=12% Similarity=0.045 Sum_probs=105.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+.++.++.+++.++.++++|+..+++.|++.|++.|.. +....++.|+.|+++|++..+..+....+|.++
T Consensus 60 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 139 (375)
T 2gfp_A 60 DRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL 139 (375)
T ss_dssp TTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999876 456788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHH-HhhcccCchh
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPR 144 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~-~~~~lpESP~ 144 (427)
++.++..+....+||..+.+.++..++..+ ..+.+||+|+
T Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 999888877667999999988877766554 4556788775
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.84 E-value=1.2e-20 Score=186.01 Aligned_cols=335 Identities=13% Similarity=0.026 Sum_probs=180.7
Q ss_pred hhccchhHHHHHHHHHHHHHH---HhhccchHH-HHHHHHHHhhhccccch-hhhhhhhhccCC--CCchhHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGL---LSSFSPNYI-TLITLRCLVGVGLGSGH-VFLSWFLEFVPP--SNRGMWMVIFSSFW 98 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~---~~~~a~~~~-~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~ 98 (427)
||+|||+.++++..+++++.. ...+++... .+..+|++.|++.|... ...+...++.++ ++|+...+......
T Consensus 68 Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 147 (417)
T 2cfq_A 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG 147 (417)
T ss_dssp TTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSST
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHH
Confidence 499999999988877654321 123333221 24567777777666432 222333344433 34566566666666
Q ss_pred HHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 99 TIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 99 ~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
.+|..+++.++..+.. .+||..|++.+++.++..+..++.||+|+. +.+.+| ++
T Consensus 148 ~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------~~---------- 201 (417)
T 2cfq_A 148 CVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVAN------------AV---------- 201 (417)
T ss_dssp TTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS------------SS----------
T ss_pred HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---cccccc------------cc----------
Confidence 7777777766655443 579999998877765555444444443310 000000 00
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
+ +.+ ++ .....++++++.+.... .+...+.....++....+.|......
T Consensus 202 ---~--~~~----------------~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---- 250 (417)
T 2cfq_A 202 ---G--ANH----------------SA---FSLKLALELFRQPKLWF---LSLYVIGVSCTYDVFDQQFANFFTSF---- 250 (417)
T ss_dssp ---S--SCC----------------CC---CCHHHHHHHTTCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred ---c--ccc----------------cc---ccHHHHHHHhcCCchhh---HHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 0 000 00 00123334444322111 11111222222222222223221100
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHh
Q 014265 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVM 338 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (427)
.+..............+..+..+++.++.+++.||+|||+.+..+....++..+......+.+..........++..
T Consensus 251 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (417)
T 2cfq_A 251 ---FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP 327 (417)
T ss_dssp ---SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHH
T ss_pred ---HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 00000001111122234445667788899999999999998877666555444333332222221111111112222
Q ss_pred hhhHhHHHhcccccccchhhHHHHHH-HHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 339 GAFTVSLIYAAEIYPTSVRSTGAGAA-NAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 339 ~~~~~~~~~~~ElfPt~~R~~~~g~~-~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
......+.+.+|.+|++.|+++.|+. +..+++|++++|.+.+.+.+..+....+.+.+++.+++.+..+++.||++..+
T Consensus 328 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 22345678999999999999999996 77778999999999998887655555667777777777777777778877655
Q ss_pred ccc
Q 014265 418 LSD 420 (427)
Q Consensus 418 l~e 420 (427)
+-.
T Consensus 408 ~~~ 410 (417)
T 2cfq_A 408 LLR 410 (417)
T ss_dssp SSS
T ss_pred HHH
Confidence 543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.82 E-value=5.9e-20 Score=186.07 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=95.8
Q ss_pred hhc-cchhHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHH---HHHHHH
Q 014265 26 WQN-LVRMGFLGEALVTAGAGLLSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI---FSSFWT 99 (427)
Q Consensus 26 ~~~-GRk~~~~~~~~~~~~~~~~~~~a~-~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~ 99 (427)
||+ |||+.+.++.++..++.++.++++ |+..++++|++.|++.|.. +...+++.|++|+++|++..+. .+....
T Consensus 79 dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 158 (524)
T 2xut_A 79 DRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTIN 158 (524)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence 599 999999999999999999999999 9999999999999999886 4567888999999999877666 888889
Q ss_pred HhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHh
Q 014265 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 136 (427)
Q Consensus 100 iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~ 136 (427)
+|..+++.++..+....+||+.|++.++..++..+..
T Consensus 159 ~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 159 FGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999888887777667899999998877766544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.30 E-value=1.3e-10 Score=114.51 Aligned_cols=140 Identities=14% Similarity=0.021 Sum_probs=99.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh----hchhhHHHHHHHHHHHHHhhhhHhHHHhcccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
..+..++..++.++.|.+.||+|||+.+..+.++.++..+.... ..+.+...+..++..++..........+.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 34455667788889999999999999998887766655555444 33333323333333333344556778999999
Q ss_pred cccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
+|++.|+++.|+.+....+|.+++|.+.+.+.+..+ -..++++.+.+.++..+...++.||++.
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999999988776654 3455666666666665555555566544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.16 E-value=3.5e-09 Score=103.87 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=79.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH---HhhchhhHHHHHHHHHHHHHhhhhHhHHHhccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.....+...++.++.|.+.||+|||+.+..+..+.++..+.. ....+.+...+..++..++..........+.+|.+
T Consensus 67 ~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 146 (438)
T 3o7q_A 67 QSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG 146 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc
Confidence 445556667788899999999999999988777665554444 22233232222233333344445567789999999
Q ss_pred ccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
|++.|+.+.|+.+....+|..++|.+.+.+.
T Consensus 147 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 147 PESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988777
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.15 E-value=2e-09 Score=107.51 Aligned_cols=137 Identities=12% Similarity=-0.008 Sum_probs=95.2
Q ss_pred HHHHHhhhhhHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~-~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.....++..++.++.|.++|| +|||+.+..+..+.++..+......+.+...+..++..++.....+....+.+|.+|+
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 344556677888999999999 8999999888777665555444433333333333333344444566789999999999
Q ss_pred ch--hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCc
Q 014265 355 SV--RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 355 ~~--R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
+. |+++.++.+....+|..++|.+.+.+.+..+-..++.+.+...+++.+...+..|+
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 88 77788888899999999999999988776654455666555555555554444333
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.03 E-value=2.1e-09 Score=103.40 Aligned_cols=142 Identities=15% Similarity=0.046 Sum_probs=97.1
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....+...++..+.|.+.||+|||+.+..+....++..+......+.+......++..++..........+.+|.+|++
T Consensus 41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence 34455666777888999999999999888777666555544443333222222222223333334567789999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
.|+++.++.+....+|..++|.+.+.+.+..+....+.+.+.+.++..+...+..||++.++
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 99999999999999999999999887765544334556666666666554555667876543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.96 E-value=1.7e-08 Score=101.53 Aligned_cols=135 Identities=16% Similarity=0.047 Sum_probs=90.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHhhhhHhHHHhccccccc
Q 014265 277 FITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~-GRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.+..+...++.++.|.++||+ |||+.+..+.++.++..+...... +.+......++..++..........+.+|.+|+
T Consensus 61 ~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 140 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ 140 (524)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence 344556677788999999999 999998887766655554444433 333222222233333333456778999999999
Q ss_pred chhhHHHHH---HHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccC
Q 014265 355 SVRSTGAGA---ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 355 ~~R~~~~g~---~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~p 411 (427)
+.|+++.+. .+....+|+.++|.+.+.+.+..+...++.+.+.+.+++.+...+..|
T Consensus 141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999876666 888889999999998887776555445566666665555555444433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.59 E-value=9.3e-07 Score=87.90 Aligned_cols=104 Identities=17% Similarity=0.021 Sum_probs=71.0
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh------------------hchhhHHHHHHHHHHHHHhhhh
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT------------------YQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
.++..+|.++.|++.||+|||+.+..+.++..+..+..++ ..+.....+.=++..++..+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3556788899999999999999998876665544443321 0111111121222334444556
Q ss_pred HhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
.....+.+|..|++.|+...++.+....+|...++.+...+.
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 778999999999999999999998888888877776655443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.34 E-value=2.8e-07 Score=90.07 Aligned_cols=117 Identities=8% Similarity=-0.040 Sum_probs=90.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHH-HHHHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~iG~i 103 (427)
||+|||+.+..+.++.+++.+..+++++...+++..++.|++.+.. +....+..|..|++.||+..+. .+....+|..
T Consensus 284 dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~ 363 (417)
T 2cfq_A 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH
Confidence 6999999999888888888778888888888888888888886654 3456788899999999998877 4777778888
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHh-hcccCc
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL-GFQPES 142 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~-~~lpES 142 (427)
+++.++..+....+|+..|.+.++..++..+.. ...||.
T Consensus 364 ~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 888777666555688888888777766654443 334443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=20.10 E-value=68 Score=16.41 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=10.2
Q ss_pred HHHHHhhhChhHH
Q 014265 290 AAILVDTAGRKLS 302 (427)
Q Consensus 290 ~~~l~d~~GRr~~ 302 (427)
.|-++.|+|||..
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4667899999864
Done!