Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>014267
MKAMQQDIKCDFLRLRMVRCHRELKLGKPISSFSHNSWQKVWHLYCEFGTKGLILELRHP
GGTCFKGSTLQGTVEFRWNNLLRAPSLTMEREIEQFRVVISITPPVQAQYLLKCVPDRVT
DDSGAMISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVK
WEDRIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAECQAAWDFSTGDELMISWESSS
LTSGLKFALKNAASPDSLLVLLRGQKMQYQGREQSEVEKEAEEEDDEGFVTLVRFTDENP
TGKATALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKETKLG
HRDWGSVNLHPSSLSSSSSITSPYIQPWYWNAKAVMAASTDNIRRPPAQNYSPAEGGDKL
YKRGIIT

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  014267
        (427 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2011821 - symbol:AT1G56230 "AT1G56230" species...  1137  2.4e-115  1


>TAIR|locus:2011821 [details] [associations]
            symbol:AT1G56230 "AT1G56230" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
            EMBL:CP002684 GO:GO:0005886 EMBL:AC069159 InterPro:IPR009836
            Pfam:PF07173 EMBL:AK226650 IPI:IPI00541599 PIR:H96603
            RefSeq:NP_176019.1 UniGene:At.42822 PRIDE:Q9C7J8
            EnsemblPlants:AT1G56230.1 GeneID:842076 KEGG:ath:AT1G56230
            TAIR:At1g56230 InParanoid:Q9C7J8 OMA:RECFVIR PhylomeDB:Q9C7J8
            ProtClustDB:CLSN2682881 Genevestigator:Q9C7J8 Uniprot:Q9C7J8
        Length = 752

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 239/432 (55%), Positives = 287/432 (66%)

Query:     2 KAMQQD-IKCDFLRLRMVRCHRELKLGKPISSFSHN-SWQKVWHLYCEFGTKGLILELR- 58
             KA Q + I   FLRLR+ RCHR+L+L K ++  S   SWQK WHLYCEFGT G ILE   
Sbjct:   333 KAEQNESIDRSFLRLRVARCHRKLQLDKKMTDLSSEASWQKAWHLYCEFGTLGFILESHC 392

Query:    59 -HPGGTCFKGSTLQGTVEFRWNNLLRAPSLTMEREI-EQFRVVISITPPVQAQYLLKCVP 116
                 G CFK    +G +EF WN+LLRA SL   R + +Q  V  S+TPPVQA YLL+ VP
Sbjct:   393 DRSRGICFKSGKPEGMIEFPWNDLLRAHSLASGRFLGKQVSVFASVTPPVQAPYLLRFVP 452

Query:   117 DRVTDDSGAMISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETP 176
             DRVTDDSGAMISD + R N +RPQEGRWL+RTVLDHAGRECFV+RIRVG G ++RGGE P
Sbjct:   453 DRVTDDSGAMISDSVQRTNNFRPQEGRWLTRTVLDHAGRECFVIRIRVGKGVFKRGGEVP 512

Query:   177 SAVKWEDRIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAECQAAWDFSTGDELMISW 236
             S VK E+RI E+R G WSYV GSIG+AP KVVGT TPKEP  + +AAW+FSTGDEL I W
Sbjct:   513 SPVKSEERITEVRVGSWSYVEGSIGKAPAKVVGTVTPKEPMEDWEAAWEFSTGDELCIRW 572

Query:   237 ESSSLTSGLKFALKNAASPDSLLVLLRGQKMQYQGRXXXXXXXXXXXXXXXGFVTLVRFT 296
             +S    S L+   +N   P SL+ LL G++MQY+G                GFVT+VR T
Sbjct:   573 DSLGTISELRLYSRN---PGSLVRLLTGRRMQYKGEDEEDDE---------GFVTVVRST 620

Query:   297 DENPTGKATALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKE 356
             +E+PT KATAL++WK   +E LPEEDAV  LLL  SILRSV+  R+EDVG LL+R+RI E
Sbjct:   621 EEDPTEKATALIDWKHQAVEFLPEEDAVFVLLLSVSILRSVTHKRREDVGKLLVRKRITE 680

Query:   357 TKLGHRDWGSVNLHPXXXXXXXXXXXPYIQPWYWNAKAVMAAS--TDNIRRP-PAQNYSP 413
                G RDWGSV +             PY++PWY N+  VMA        R P P  +YS 
Sbjct:   681 AT-GERDWGSV-IVDASSTNVSSSSSPYVEPWYRNSGKVMAMEEKAQVARYPYPVMSYSN 738

Query:   414 AEGGDKLYKRGI 425
              +GGD LYK  I
Sbjct:   739 VDGGDNLYKHVI 750


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      427       401   0.00098  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  629 (67 KB)
  Total size of DFA:  293 KB (2149 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.25u 0.11s 28.36t   Elapsed:  00:00:01
  Total cpu time:  28.25u 0.11s 28.36t   Elapsed:  00:00:01
  Start:  Fri May 10 11:12:57 2013   End:  Fri May 10 11:12:58 2013

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