BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014267
(427 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NBT0|POC1A_HUMAN POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1
SV=2
Length = 407
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 79/204 (38%), Gaps = 38/204 (18%)
Query: 18 VRCHRELKLGKPISSFSHNSWQKVW--------HLYCEFGTKGLILELRHPGGTCFKGST 69
VRC + G+ I S S + K+W H YCE G ++ HP GTC +
Sbjct: 148 VRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDF-HPSGTCIAAAG 206
Query: 70 LQGTVEFRWNNLLRAPSLTMEREIEQFRVV-ISITPPVQAQYLLKCVPDRVTDDSGAMIS 128
+ TV+ W+ +R L ++ V +S P YL+ + DS I
Sbjct: 207 MDNTVKV-WD--VRTHRLLQHYQLHSAAVNGLSFHP--SGNYLIT-----ASSDSTLKIL 256
Query: 129 DVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVKWEDRIIEI 188
D++ EGR L T+ H G V R G ++ GG + W+ +
Sbjct: 257 DLM---------EGRLL-YTLHGHQGPATTVAFSRT-GEYFASGGSDEQVMVWKSNFDIV 305
Query: 189 REGFWSYV-------AGSIGRAPE 205
G + V A S+G PE
Sbjct: 306 DHGEVTKVPRPPATLASSMGNLPE 329
>sp|Q28I85|POC1A_XENTR POC1 centriolar protein homolog A OS=Xenopus tropicalis GN=poc1a
PE=2 SV=1
Length = 441
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 37/177 (20%)
Query: 18 VRCHRELKLGKPISSFSHNSWQKVW--------HLYCEFGTKGLILELRHPGGTCFKGST 69
VRC + G+ I S S + K+W H +CE G ++ HP GTC +
Sbjct: 147 VRCAKFSPDGRLIVSASDDKTIKLWDKTSRECIHSFCEHGGFVNFVDF-HPSGTCIAAAA 205
Query: 70 LQGTVEFRWNNLLRAPSLTMEREIEQFR----VVISITPPVQAQYLLKCVPDRVTDDSGA 125
TV+ W+ + M + I+ ++ VV S++ YL+ ++DS
Sbjct: 206 TDNTVKV-WD-------IRMNKLIQHYQVHSGVVNSLSFHPSGNYLITA-----SNDSTL 252
Query: 126 MISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVKWE 182
+ D++ EGR L T+ H G V+ G F+ GG + W+
Sbjct: 253 KVLDLL---------EGRLL-YTLHGHQG-PVTSVKFSREGEFFASGGSDEQVMVWK 298
>sp|Q2TBP4|POC1A_BOVIN POC1 centriolar protein homolog A OS=Bos taurus GN=POC1A PE=2 SV=1
Length = 407
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 33/184 (17%)
Query: 18 VRCHRELKLGKPISSFSHNSWQKVW--------HLYCEFGTKGLILELR-HPGGTCFKGS 68
VRC + G+ I S S + K+W H YCE G G + + HP GTC +
Sbjct: 148 VRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHG--GFVTYVDFHPSGTCIAAA 205
Query: 69 TLQGTVEFRWNNLLRAPSLTMEREIEQFRV-VISITPPVQAQYLLKCVPDRVTDDSGAMI 127
+ TV+ W+ +R L ++ V +S P YL+ + DS I
Sbjct: 206 GMDNTVKV-WD--VRTHRLLQHYQLHSAAVNALSFHP--SGNYLVT-----ASSDSTLKI 255
Query: 128 SDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVKWEDRIIE 187
D++ EGR L T+ H G V R G ++ GG + W+
Sbjct: 256 LDLM---------EGRLL-YTLHGHQGPATTVAFSRT-GEYFASGGSDEQVMVWKSNFDI 304
Query: 188 IREG 191
+ G
Sbjct: 305 VDYG 308
>sp|Q8JZX3|POC1A_MOUSE POC1 centriolar protein homolog A OS=Mus musculus GN=Poc1a PE=2
SV=2
Length = 405
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 31/183 (16%)
Query: 18 VRCHRELKLGKPISSFSHNSWQKVW--------HLYCEFGTKGLILELRHPGGTCFKGST 69
VRC + G+ I S S + K+W H YCE G ++ HP GTC +
Sbjct: 148 VRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDF-HPSGTCIAAAG 206
Query: 70 LQGTVEFRWNNLLRAPSLTMEREIEQFRV-VISITPPVQAQYLLKCVPDRVTDDSGAMIS 128
+ TV+ W+ R L ++ V +S P YL+ + DS I
Sbjct: 207 MDNTVKV-WD--ARTHRLLQHYQLHSAAVNALSFHP--SGNYLIT-----ASSDSTLKIL 256
Query: 129 DVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVKWEDRIIEI 188
D++ EGR L T+ H G V R G ++ GG + W+ +
Sbjct: 257 DLM---------EGRLL-YTLHGHQGPATTVAFSRT-GEYFASGGSDEQVMVWKSNFDIV 305
Query: 189 REG 191
G
Sbjct: 306 DYG 308
>sp|Q7T0P4|POC1A_XENLA POC1 centriolar protein homolog A OS=Xenopus laevis GN=poc1a PE=1
SV=2
Length = 441
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 37/177 (20%)
Query: 18 VRCHRELKLGKPISSFSHNSWQKVW--------HLYCEFGTKGLILELRHPGGTCFKGST 69
VRC + G+ I S S + K+W +CE G ++ HP GTC +
Sbjct: 147 VRCAKFSPDGRLIVSASDDKTIKLWDKTSRECIQSFCEHGGFVNFVDF-HPSGTCIAAAA 205
Query: 70 LQGTVEFRWNNLLRAPSLTMEREIEQFR----VVISITPPVQAQYLLKCVPDRVTDDSGA 125
TV+ W+ + M + I+ ++ VV S++ YL+ ++DS
Sbjct: 206 TDNTVKV-WD-------IRMNKLIQHYQVHSGVVNSLSFHPSGNYLITA-----SNDSTL 252
Query: 126 MISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVKWE 182
+ D++ EGR L T+ H G V+ G F+ GG + W+
Sbjct: 253 KVLDLL---------EGRLL-YTLHGHQG-PVTCVKFSREGDFFASGGSDEQVMVWK 298
>sp|Q566E5|KDEL2_RAT KDEL motif-containing protein 2 OS=Rattus norvegicus GN=Kdelc2 PE=2
SV=1
Length = 508
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 78 WNNLLRAPSLTMEREIEQFRVVISITPPVQAQYLLKCVPDRVTDDSGAMISDVILRLNGY 137
W L P+ E +IEQ + P + Q +LK VP R D+ GA++ IL + Y
Sbjct: 151 WQKTLSCPA--NEPQIEQDFISF---PSINLQQMLKEVPKRFGDERGAIVHYTILNNHIY 205
Query: 138 RPQEGRW 144
R G++
Sbjct: 206 RRSLGKY 212
>sp|P19144|PRTX_ERWCH Serralysin C OS=Erwinia chrysanthemi GN=prtC PE=1 SV=1
Length = 478
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 228 TGDELMISWESSSLTSGLKFALKNAASPDSLLVLLRGQKMQ 268
+G E+M++W++S+ TS L L N SP+ LV + GQ Q
Sbjct: 433 SGGEIMLNWDASANTSNLYLNLDNNTSPE-FLVKIVGQVSQ 472
>sp|Q2VWP7|PRTG_HUMAN Protogenin OS=Homo sapiens GN=PRTG PE=2 SV=1
Length = 1150
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 307 LLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKETKLGHRDWGS 366
+ N KL++ +++PE+DA+ C M + GS+L R R+ R
Sbjct: 375 MYNSKLVINQIIPEDDAIYQ---C---------MAENSQGSILSRARLTVVMSEDRPSAP 422
Query: 367 VNLHPSSLSSSSSITSPYIQPWYWNAKAVMAASTDNIR 404
N+H ++SSS+ + + + +P Y N+ V+A S ++
Sbjct: 423 YNVHAETMSSSAILLA-WERPLY-NSDKVIAYSVHYMK 458
>sp|Q2VWP9|PRTG_RAT Protogenin OS=Rattus norvegicus GN=Prtg PE=2 SV=1
Length = 1193
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 307 LLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKETKLGHRDWGS 366
+ N KL++ +++PE+DA+ M + GS+L R R+ R
Sbjct: 370 MYNSKLVINQIIPEDDAIYQC------------MAENSQGSVLSRARLTVVMSEDRPSAP 417
Query: 367 VNLHPSSLSSSSSITSPYIQPWYWNAKAVMAASTDNIR 404
N+H ++SSS+ + + + +P Y N+ V+A S ++
Sbjct: 418 YNVHAETMSSSAILLA-WERPLY-NSDKVIAYSVHYMK 453
>sp|Q2EY15|PRTG_MOUSE Protogenin OS=Mus musculus GN=Prtg PE=2 SV=1
Length = 1191
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 307 LLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKETKLGHRDWGS 366
+ N KL++ +++PE+DA+ C M + GS+L R R+ R
Sbjct: 369 MYNSKLVINQIIPEDDAIYQ---C---------MAENSQGSVLSRARLTVVMSEDRPSAP 416
Query: 367 VNLHPSSLSSSSSITSPYIQPWYWNAKAVMAASTDNIR 404
N+H ++SSS+ + + + +P Y N+ V+A S ++
Sbjct: 417 YNVHAETMSSSAILLA-WERPLY-NSDKVIAYSVHYMK 452
>sp|Q589G5|PRTG_CHICK Protogenin OS=Gallus gallus GN=PRTG PE=2 SV=1
Length = 1187
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 307 LLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKETKLGHRDWGS 366
+ N KL++ +++PE+DA+ M + GS+L R R+ R
Sbjct: 367 MYNSKLVINQIIPEDDAIYQC------------MAENSQGSVLSRARLTVVMSEDRPSAP 414
Query: 367 VNLHPSSLSSSSSITSPYIQPWYWNAKAVMAASTDNIR 404
N+H ++ SSS+I + +P Y N+ V+A S ++
Sbjct: 415 YNVHAETM-SSSAILLAWERPLY-NSDKVIAYSVHYMK 450
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,112,549
Number of Sequences: 539616
Number of extensions: 6971525
Number of successful extensions: 20077
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 20053
Number of HSP's gapped (non-prelim): 33
length of query: 427
length of database: 191,569,459
effective HSP length: 120
effective length of query: 307
effective length of database: 126,815,539
effective search space: 38932370473
effective search space used: 38932370473
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)